Psyllid ID: psy14440

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-
Protein Sequence
MDQLPSLMDDPPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPSPQPPAQPQQVPSPYHTPPPSQTSKQSGKAPDKNTLITMLKLLRQYNLRGTEEQLKKEINVNDLGIDPNDSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYEGEATRQDNKAKIYYGMPREPDLQNTIAVPDDDEEEAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLRGP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHcccHHHHHHHccccEEEEcHHHHHHHHHHHHHccHHHHHHHHHccEEEEEEcccccccccccEEEccccccccccccccccccHHHHccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHcccEEEEcccccccEEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEccccccEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEccccccEEEEccccccccEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccEEEccccccccccccccEEEEEEcccccEEEEEEcccccEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEEEccccccccccccccccEcccccccEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHcccccHHHHcccccEEEEEccHHHHHHHHHHHccccEEEEcccccEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEccccccccccEEcccccEEEEEcccccEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccEccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEccEccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccc
Coil and Loop (DISEMBL)
mdqlpslmddppqesfhsvpiiqqtlspqqppvspqhqnmmspiqqhslsphtqapspqppaqpqqvpspyhtpppsqtskqsgkapdknTLITMLKLLRQYNLRGTEEQLKKEinvndlgidpndseIGDLLSAyesegdpnlyEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLmdhephyqeDLRKLssvtkrdqirTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYfdmyegeatrqdnkakiyygmprepdlqntiavpdddeeeageggdkpkkkkakkdsmfskktksdpnappvdriplpplkdsekIDKLKALREATKrvtlgpeslpsiACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQklkamkssdqlQDIEMECDDILVRIMDERNAETTRTlvghegpvrklsfspdrslllscsQDNTIRLWSLLLWRCLVVykghghpvwdikfsphgyyfasagHDRMARLWatdsyhplrlfvghysdvdcvqfhpnsnyvatgssdrtirlwdcvtgshvrlltghkapvyALSFSVCGRFLasaggdgnvhmwdlsnghllTLLTGHTDVVRALCfsrdgnilassgqdcsVKLWDFaklsdevgteevnlshsadiknSSLAYLVRSYktkaspllHLIFSRrnillrgp
Flexible Loop (DISEMBL)
mdqlpslmDDPPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPSPQPPAQPQQVPSPYHTPPPsqtskqsgkapdKNTLITMLKLLRQYNLRGteeqlkkeinvndlgidpNDSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRklssvtkrdqirtneiaetfrstefiiRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYEGEATRQDNKAKIYYGMPREPDLQNtiavpdddeeeageggdkpkkkkakkdsmfskktksdpnappvdriplpplkdsekIDKLKALREatkrvtlgpeslpsIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMkssdqlqdIEMECDDILVRIMDERNAETtrtlvghegpvrklsfspDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNyvatgssdrTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNIlassgqdcsVKLWDFAKLSDEVGteevnlshsadiknSSLAYLVRSYktkaspllhlifsrrnillrgp
Low Complexity Region (SEG)
MDQLPSLMDDPPQESFHSVPIIqqtlspqqppvspqhqNMMSPIQQHSLSPHTqapspqppaqpqqvpspYHTPPPSQTSKQSGKAPDKNTLITMLKLLRQYNLRGTEEQLKKEINVNDLGIDPNDSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYEGEATRQDNKAKIYYGMPREPDLQNTIAVpdddeeeageggdkpkkkkakkdSMFSKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNghlltlltghtDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLRGP
Disordered region (IsUnstruct)
******************************************************************************************TLITMLKLLRQYNLRGTEEQLKKEINVNDLGI*******GDLLSAY*****PNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKH*************************TNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYEGEATRQDNKAKIYYG*******************************************************************************TLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKA******LQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILL***
Disordered Region (DISOPRED)
**********************************************************************************************MLKLLRQYNLRGTEE*****************************EGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYEGEATRQDNKAKIYYGMPREPDLQNTIAVPDD************************************DRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGT*******SADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLRGP
Disordered Region (DISEMBL)
**************SFHSVPIIQQT**************MMSPI******************************************PDKNTLITMLKLLRQYNLRGTEEQLKKEINVNDLGIDPNDSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYEGEATRQDNKAKIYYGMPREPDLQNTIAVPD**********************************PPVDRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLRGP
Disordered Region (DISPRO)
*****SLMDDPPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSLSP***********************************PDKNTLITMLKLLRQYNLRGTEEQLKKEINVND*****NDSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYEGEATRQDNKAKIYYGMPREPDLQNTIAVPDDDEEEAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDQLPSLMDDPPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPSPQPPAQPQQVPSPYHTPPPSQTSKQSGKAPDKNTLITMLKLLRQYNLRGTEEQLKKEINVNDLGIDPNDSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYEGEATRQDNKAKIYYGMPREPDLQNTIAVPDDDEEEAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLRGP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	711	2.2.26 [Sep-21-2011]
Q15542	800	Transcription initiation	yes	N/A	0.812	0.722	0.500	1e-175
P49846	704	Transcription initiation	yes	N/A	0.853	0.862	0.467	1e-174
Q8C092	801	Transcription initiation	yes	N/A	0.812	0.721	0.497	1e-174
O13282	643	Transcription initiation	yes	N/A	0.762	0.842	0.345	3e-97
Q91WQ5	589	TAF5-like RNA polymerase	no	N/A	0.760	0.918	0.345	4e-92
O75529	589	TAF5-like RNA polymerase	no	N/A	0.760	0.918	0.338	1e-91
P38129	798	Transcription initiation	yes	N/A	0.528	0.471	0.408	3e-82
Q8SQS4	556	Transcription initiation	yes	N/A	0.734	0.938	0.344	5e-81
O74319	642	Transcription initiation	no	N/A	0.741	0.820	0.318	3e-80
P49695	742	Probable serine/threonine	no	N/A	0.306	0.293	0.430	2e-41

>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3

 Score =  615 bits (1586), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/599 (50%), Positives = 424/599 (70%), Gaps = 21/599 (3%)

Query: 128 EIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGH 187
           ++  +LSAY  +GDP +YE+ Y  LK FIE SLD ++ EL  + YP+ VHMY+ELVYN H
Sbjct: 197 DVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQH 256

Query: 188 EHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSL 247
           E++A     K   D E +YQ+DLR LSS+TK++ ++ NE    FR+++F++R+SRD+  L
Sbjct: 257 ENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQL 316

Query: 248 LKRHLQEKKHTVLLNIVQEHLYFDMYEG-----------------EATRQDNKAKIYYGM 290
           LKRHLQEK++  + NIVQEHLY D+++G                 EA R+ NK+K+++G+
Sbjct: 317 LKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGL 376

Query: 291 PREPDLQNTIAVPDDDEEEAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPVDRIPLPPLK 350
            +EP+++  +   D++ E       KPKKKK KKDS+ SK  K DPNAPP +RIPLP LK
Sbjct: 377 LKEPEIEVPLDDEDEEGENEEG---KPKKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELK 433

Query: 351 DSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESY 410
           DS+K+DK+  ++E TKRV LGP+ LPSI  YT LNA Q +T  ++++D S++A GF++S 
Sbjct: 434 DSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADST 493

Query: 411 IKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSP 470
           +++WS+ P+KL+++K +  L  I+ E DD+L RIMDE+ A   + L GH GPV   SFSP
Sbjct: 494 VRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSP 553

Query: 471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA 530
           DR+ LLS S+D T+RLWSL  + CLV YKGH +PVWD +FSP+GYYF S GHDR+ARLWA
Sbjct: 554 DRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWA 613

Query: 531 TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVY 590
           TD Y PLR+F GH +DV+C +FHPNSNYVATGS+DRT+RLWD + G+ VR+ TGHK P++
Sbjct: 614 TDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIH 673

Query: 591 ALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDC 650
           +L+FS  GRFLA+   DG V +WD+ +G ++  L GHTD V +L FSRDG ILAS   D 
Sbjct: 674 SLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDN 733

Query: 651 SVKLWDFAKLSDEVGTEEVNLSHS-ADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILL 708
           +V+LWD  K  +++ T++   +    ++  +S   L+ +Y TK++P++HL F+RRN++L
Sbjct: 734 TVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVL 792

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.
Homo sapiens (taxid: 9606)

>sp|P49846|TAF5_DROME Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1

 Score =  612 bits (1579), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 312/667 (46%), Positives = 449/667 (67%), Gaps = 60/667 (8%)

Query: 101 QYNLRGTEEQLKKEINVNDLGI-DPNDSEIGDLLSAYESEGDPNL--------------- 144
           +Y L+ TEE L +E NV+ + + + ++S++  +L A    GD N                
Sbjct: 32  KYQLKSTEELLCQEANVSSVELSEISESDVQQVLGAVLGAGDANRERKHVQSPAQGHKQS 91

Query: 145 ------------------------YEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYI 180
                                   YE AY++L+ F+E+SLD+YK+EL +VLYP+LV +Y 
Sbjct: 92  AVTEANAAEELAKFIDDDSFDAQHYEQAYKELRTFVEDSLDIYKHELSMVLYPILVQIYF 151

Query: 181 ELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRM 240
           +++ +G   +A E + K+  D + +Y E L  L  ++K +++  N++       +F+IRM
Sbjct: 152 KILASGLREKAKEFIEKYKCDLDGYYIEGLFNLLLLSKPEELLENDLVVAMEQDKFVIRM 211

Query: 241 SRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYE-----------------GEATRQDNK 283
           SRD+ SL KRH+Q+++  V+ +IV ++L+FD YE                 GEA RQDNK
Sbjct: 212 SRDSHSLFKRHIQDRRQEVVADIVSKYLHFDTYEGMARNKLQCVATAGSHLGEAKRQDNK 271

Query: 284 AKIYYGMPREPDLQ--NTIAVPDDDEEEAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPV 341
            ++YYG+ +E D Q   T A   ++E++  +  D+PKKKK KKD + SKK+KSDPNAP +
Sbjct: 272 MRVYYGLLKEVDFQTLTTPAPAPEEEDDDPDAPDRPKKKKPKKDPLLSKKSKSDPNAPSI 331

Query: 342 DRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSI 401
           DRIPLP LKDS+K+ KLKALREA+KR+ L  + LPS   YT+LN+ Q VTCAEIS+D ++
Sbjct: 332 DRIPLPELKDSDKLLKLKALREASKRLALSKDQLPSAVFYTVLNSHQGVTCAEISDDSTM 391

Query: 402 LAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEG 461
           LA GF +S +++WSL P KL+ +K +D L++++ E  DI VR++D+R+ E TR+L+GH G
Sbjct: 392 LACGFGDSSVRIWSLTPAKLRTLKDADSLRELDKESADINVRMLDDRSGEVTRSLMGHTG 451

Query: 462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG 521
           PV + +F+P+ +LLLSCS+D+TIRLWSLL W C+V Y+GH +PVWD++F+PHGYYF S  
Sbjct: 452 PVYRCAFAPEMNLLLSCSEDSTIRLWSLLTWSCVVTYRGHVYPVWDVRFAPHGYYFVSCS 511

Query: 522 HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRL 581
           +D+ ARLWATDS   LR+FVGH SDVDCVQFHPNSNYVATGSSDRT+RLWD +TG  VRL
Sbjct: 512 YDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNYVATGSSDRTVRLWDNMTGQSVRL 571

Query: 582 LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGN 641
           +TGHK  V +L+FS CGR+LAS   D N+ +WDLSNG L+T L  HT  V  + FSRDG 
Sbjct: 572 MTGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNGSLVTTLLRHTSTVTTITFSRDGT 631

Query: 642 ILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIF 701
           +LA++G D ++ LWDF K++++  +  + +SH  D +N    YL+R++ +K SP + L F
Sbjct: 632 VLAAAGLDNNLTLWDFHKVTEDYISNHITVSHHQD-ENDEDVYLMRTFPSKNSPFVSLHF 690

Query: 702 SRRNILL 708
           +RRN+L+
Sbjct: 691 TRRNLLM 697

TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. May play a role in helping to anchor Taf4 within the TFIID complex. May be involved in transducing signals from various transcriptional regulators to the RNA polymerase II transcription machinery.

Drosophila melanogaster (taxid: 7227)

>sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1

 Score =  612 bits (1579), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 298/599 (49%), Positives = 423/599 (70%), Gaps = 21/599 (3%)

Query: 128 EIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGH 187
           ++  +LSAY  +GDP +YE+ Y  LK FIE SLD ++ EL  + YP+ VHMY+ELVYN H
Sbjct: 198 DVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQH 257

Query: 188 EHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSL 247
           E++A     K   D E +YQ+DLR LSS+TK++ ++ NE    FR+++F++R+ RD+  L
Sbjct: 258 ENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRIYRDSYQL 317

Query: 248 LKRHLQEKKHTVLLNIVQEHLYFDMYEG-----------------EATRQDNKAKIYYGM 290
           LKRHLQEK++  + NIVQEHLY D+++G                 EA R+ NK+K+++G+
Sbjct: 318 LKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGL 377

Query: 291 PREPDLQNTIAVPDDDEEEAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPVDRIPLPPLK 350
            +EP+++  +   D++ E       KPKKKK KKDS+ SK  K DPNAPP +RIPLP LK
Sbjct: 378 LKEPEIEVPLDDEDEEGENEEG---KPKKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELK 434

Query: 351 DSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESY 410
           DS+K+DK+  ++E TKRV LGP+ LPSI  YT LNA Q +T  ++++D S++A GF++S 
Sbjct: 435 DSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADST 494

Query: 411 IKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSP 470
           +++WS+ P+KL+++K +  L  I+ E DD+L RIMDE+ A   + L GH GPV   SFSP
Sbjct: 495 VRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSP 554

Query: 471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA 530
           DR+ LLS S+D T+RLWSL  + CLV YKGH +PVWD +FSP+GYYF S GHDR+ARLWA
Sbjct: 555 DRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWA 614

Query: 531 TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVY 590
           TD Y PLR+F GH +DV+C ++HPNSNYVATGS+DRT+RLWD + G+ VR+ TGHK P++
Sbjct: 615 TDHYQPLRIFAGHLADVNCTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIH 674

Query: 591 ALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDC 650
           +L+FS  GRFLA+   DG V +WD+ +G ++  L GHTD V +L FSRDG ILAS   D 
Sbjct: 675 SLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDN 734

Query: 651 SVKLWDFAKLSDEVGTEEVNLSHS-ADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILL 708
           +V+LWD  K  +++ T++   +    ++  +S   L+ +Y TK++P++HL F+RRN++L
Sbjct: 735 TVRLWDAVKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVL 793

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.

Mus musculus (taxid: 10090)

>sp|O13282|TAF5_SCHPO Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf5 PE=1 SV=1

 Score =  357 bits (915), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 213/616 (34%), Positives = 321/616 (52%), Gaps = 74/616 (12%)

Query: 139 EGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKH 198
           E  P+ Y   Y  L+ ++++SL++YK EL  +L+P+ VH Y+ L+   H   A +     
Sbjct: 51  EETPDAYTHTYTILRDWVDSSLELYKAELHRILFPIFVHSYLNLLSQDHYEAAKQFYELF 110

Query: 199 LMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEK--- 255
             DH   +  D++ L S++    +  +  A+ +R  ++ +  SR T  LL   L E    
Sbjct: 111 KDDHTDLHDFDVKNLKSLSLPSHVAEDRTAQQYRQNKYQLHFSRITFDLLLHFLFENVSN 170

Query: 256 KHTVLLNIVQEHLYFDMYEGEATRQDNKAKI----------------------YYGMPRE 293
             ++++ ++ +H+   +  G  T  +N   I                         MP +
Sbjct: 171 GGSIIIKLINQHIDIHIVPGRPTVLENAKVINEQEGITGQSFERGDAQLQPVKLQQMPMD 230

Query: 294 PDLQNTIAVPDDDEEEAGEGGDKPKKKKAKKDSMFSKKTKSDP-NAPPVDRIPLPPLKDS 352
            +++  + +  D EEE     + P  +  K    F K  + +  +AP  D IPLPP K  
Sbjct: 231 KEMEKIVEM--DLEEEDMMHQNDPNNQSPKLLKEFRKLHEPNAEDAPSRDYIPLPPHKGV 288

Query: 353 EKIDKLKALREATKRVTLGPE-SLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYI 411
           + + +++A+++ +KR+ LGP  SLPS+  YT  +    + CAE S D +++A GF ESYI
Sbjct: 289 DILSEVEAVKDWSKRLHLGPRASLPSVCMYTFHHTNNNMNCAEFSPDSTMIACGFQESYI 348

Query: 412 KLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPD 471
           +LWS+   K K++  S  ++D      D  VR            L+ H GPV   +FSPD
Sbjct: 349 RLWSIKADK-KSLPKSTSVED-----SDGSVR------------LLSHSGPVYGTTFSPD 390

Query: 472 RSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWAT 531
              LLSCS+D + RLWS+     LV YKGH  PVWD+ F P G+YFA+A HD+ A+LW+ 
Sbjct: 391 NKYLLSCSEDASARLWSVDTKTALVAYKGHTGPVWDVAFGPFGHYFATASHDQTAQLWSC 450

Query: 532 DSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYA 591
           D  +PLR+F GH SDVDCV FHPNS YV TGSSD+T RLWD   G  VR+  GH  PV A
Sbjct: 451 DHIYPLRVFAGHLSDVDCVTFHPNSAYVLTGSSDKTCRLWDVHRGHSVRVFNGHTQPVTA 510

Query: 592 LSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCS 651
           ++ +  G  +ASA  +G +H+WD+  G  +  + GH   + +L FSR+  +L S G DC+
Sbjct: 511 VAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIYSLSFSRESTVLVSGGSDCT 570

Query: 652 VKLWDFAK----------LSDEVGT---------EEVNLSHSADIKNSSLAYLVRSYKTK 692
           V+ WD  K          L+  V T          EVN S S D        +V  Y TK
Sbjct: 571 VRAWDVFKTNYNNPVSSSLTGSVVTPFSAKTSTFNEVNWSTSPD-------QMVALY-TK 622

Query: 693 ASPLLHLIFSRRNILL 708
            +P+ ++ F+RRN+ L
Sbjct: 623 QTPIFNVSFTRRNLCL 638

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Regulates the genes involved in ubiquitin-dependent proteolysis during the progression of M-phase of mitosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q91WQ5|TAF5L_MOUSE TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1

 Score =  339 bits (870), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 210/608 (34%), Positives = 311/608 (51%), Gaps = 67/608 (11%)

Query: 104 LRGTEEQLKKEINVNDLGIDPNDSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVY 163
           L  T E++   + V       ++S   + +SA   + +P  YE  +  L+ F+ +S   Y
Sbjct: 35  LSQTPEEMAANLTVQ------SESGCANAVSAAPCQAEPQQYEVQFGRLRSFLTDSDSQY 88

Query: 164 KYELGLVLYPVLVHMYIELVYNGHEHQATEMLHK-HLMDHEPHYQED-LRKLSSVTKRDQ 221
             E+  +LYP+ V++++ LV +G +        + H M  +   Q+D + +L +      
Sbjct: 89  SREVMPLLYPLFVYLHLNLVQSGPKSTVESFYSRFHGMFLQNASQKDVIEQLQTTQTIQD 148

Query: 222 IRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYEGEATRQD 281
           I +N     F   ++++R+  D+ + L R+LQ   +T L  ++  H++ D+   + T   
Sbjct: 149 ILSNFQLRAFLDNKYVVRLQEDSYNYLIRYLQSDNNTALCKVLAVHIHLDVQPAKRT--- 205

Query: 282 NKAKIYYGMPREPDLQNTIAVPDDDEEEAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPV 341
                                   D +    GG              S +T++    PP 
Sbjct: 206 ------------------------DYQLYASGG--------------SSRTENSSLEPP- 226

Query: 342 DRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSI 401
             +P P L++      L+ L+E+ KRV  GP SL +I  Y   N  Q +  AEIS D  +
Sbjct: 227 -EVPSPILQNEAA---LEVLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISSDSKL 282

Query: 402 LAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAET-TRTLVGHE 460
           LA GF  S IKLWSL  +KLK+         I + CD +     +E N  T  + L GH 
Sbjct: 283 LAAGFDNSCIKLWSLRSKKLKSEPHHVDTSRIRLACDTLEEEENEEDNTGTEMKILRGHC 342

Query: 461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASA 520
           GPV    F  D S LLSCS+D +IR W L  +   V+Y+GH +PVWD+  SP   YFAS 
Sbjct: 343 GPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPFSLYFASG 402

Query: 521 GHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR 580
            HDR ARLW+ D  +PLR++ GH +DVDCV+FHPNSNY+ATGS+D+T+RLW    G+ VR
Sbjct: 403 SHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVR 462

Query: 581 LLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDG 640
           L TGH+ PV +LSFS  G++LASAG D  + +WDL++G L   L GHTD + +L FS D 
Sbjct: 463 LFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDS 522

Query: 641 NILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLI 700
            ++AS+  D SV++WD               +  AD    S   LV  Y  + S +L + 
Sbjct: 523 GLIASASMDNSVRVWDI---------RSTCCNTPAD---GSSGELVGVYTGQMSNVLSVQ 570

Query: 701 FSRRNILL 708
           F   N+LL
Sbjct: 571 FMACNLLL 578

Functions as a component of the PCAF complex. The PCAF complex is capable of efficiently acetylating histones in a nucleosomal context. The PCAF complex could be considered as the human version of the yeast SAGA complex.

Mus musculus (taxid: 10090)

>sp|O75529|TAF5L_HUMAN TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1

 Score =  338 bits (867), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 206/608 (33%), Positives = 314/608 (51%), Gaps = 67/608 (11%)

Query: 104 LRGTEEQLKKEINVNDLGIDPNDSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVY 163
           L  T E++   + V       ++S   +++SA   + +P  YE  +  L+ F+ +S   +
Sbjct: 35  LSQTAEEMAANLTVQ------SESGCANIVSAAPCQAEPQQYEVQFGRLRNFLTDSDSQH 88

Query: 164 KYELGLVLYPVLVHMYIELVYNGHEHQATEMLHK-HLMDHEPHYQED-LRKLSSVTKRDQ 221
            +E+  +LYP+ V++++ LV N  +        + H M  +   Q+D + +L +      
Sbjct: 89  SHEVMPLLYPLFVYLHLNLVQNSPKSTVESFYSRFHGMFLQNASQKDVIEQLQTTQTIQD 148

Query: 222 IRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYEGEATRQD 281
           I +N     F   ++++R+  D+ + L R+LQ   +T L  ++  H++ D+         
Sbjct: 149 ILSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQSDNNTALCKVLTLHIHLDV--------- 199

Query: 282 NKAKIYYGMPREPDLQNTIAVPDDDEEEAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPV 341
                                             +P K+   +       ++S+ N    
Sbjct: 200 ----------------------------------QPAKRTDYQLYASGSSSRSENNGLEP 225

Query: 342 DRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSI 401
             +P P L++      L+ L+E+ KRV  GP SL +I  Y   N  Q +  AEIS D  +
Sbjct: 226 PDMPSPILQNEAA---LEVLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPDSKL 282

Query: 402 LAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAET-TRTLVGHE 460
           LA GF  S IKLWSL  +KLK+      +  I + CD +     ++ NA T  + L GH 
Sbjct: 283 LAAGFDNSCIKLWSLRSKKLKSEPHQVDVSRIHLACDILEEEDDEDDNAGTEMKILRGHC 342

Query: 461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASA 520
           GPV    F  D S LLSCS+D +IR W L  +   V+Y+GH +PVWD+  SP+  YFAS 
Sbjct: 343 GPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASG 402

Query: 521 GHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR 580
            HDR ARLW+ D  +PLR++ GH +DVDCV+FHPNSNY+ATGS+D+T+RLW    G+ VR
Sbjct: 403 SHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVR 462

Query: 581 LLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDG 640
           L TGH+ PV +L+FS  G++LASAG D  + +WDL++G L   L GHTD + +L FS D 
Sbjct: 463 LFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDS 522

Query: 641 NILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLI 700
            ++AS+  D SV++WD             N   SA    SS + LV  Y  + S +L + 
Sbjct: 523 GLIASASMDNSVRVWDIR-----------NTYCSAPADGSS-SELVGVYTGQMSNVLSVQ 570

Query: 701 FSRRNILL 708
           F   N+LL
Sbjct: 571 FMACNLLL 578

Functions as a component of the PCAF complex. The PCAF complex is capable of efficiently acetylating histones in a nucleosomal context. The PCAF complex could be considered as the human version of the yeast SAGA complex.

Homo sapiens (taxid: 9606)

>sp|P38129|TAF5_YEAST Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF5 PE=1 SV=1

 Score =  306 bits (784), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 170/416 (40%), Positives = 237/416 (56%), Gaps = 40/416 (9%)

Query: 318 KKKKAKKDSMFSKKTKSDPNAPPVDRIPLPP---LKDSEKIDKLKALREATKRVTLGPES 374
           ++KK  +  +  +K  S+ ++P  D +PLPP   L    +I K+K  R+A K   L   +
Sbjct: 395 EEKKESELKVDGEKKDSNLSSPARDILPLPPKTALDLKLEIQKVKESRDAIKLDNL-QLA 453

Query: 375 LPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIE 434
           LPS+  YT  N  + ++C + S+D  I A GF +SYIK+WSL    L     +    D +
Sbjct: 454 LPSVCMYTFQNTNKDMSCLDFSDDCRIAAAGFQDSYIKIWSLDGSSLNNPNIALNNNDKD 513

Query: 435 MECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC 494
            +               T +TLVGH G V   SFSPD   LLS S+D T+RLWS+     
Sbjct: 514 ED--------------PTCKTLVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTA 559

Query: 495 LVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP 554
           LV YKGH HPVWD+ FSP G+YFA+A HD+ ARLW+ D  +PLR+F GH +DVDCV FHP
Sbjct: 560 LVSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHP 619

Query: 555 NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVC--GRFLASAGGDGNVHM 612
           N  YV TGSSD+T R+WD  TG  VRL  GH APV  +S +VC  GR+L++   DG +++
Sbjct: 620 NGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPV--ISIAVCPDGRWLSTGSEDGIINV 677

Query: 613 WDLSNGHLLTLLTGH-TDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTE---- 667
           WD+  G  L  + GH  + + +L +S++GN+L S G D +V++WD  K + E   E    
Sbjct: 678 WDIGTGKRLKQMRGHGKNAIYSLSYSKEGNVLISGGADHTVRVWDLKKATTEPSAEPDEP 737

Query: 668 ------EVNLSHSADIKNSS-------LAYLVRSYKTKASPLLHLIFSRRNILLRG 710
                 +V  S + DIK           + LV S+ TK +P+  + FSR N+ L G
Sbjct: 738 FIGYLGDVTASINQDIKEYGRRRTVIPTSDLVASFYTKKTPVFKVKFSRSNLALAG 793

Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modification (histone acetylation by TAF1), facilitation of DNA opening and initiation of transcription. SAGA is involved in RNA polymerase II-dependent transcriptional regulation of approximately 10% of yeast genes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction (SPT3, SPT8 and SPT20) and promoter selectivity, interaction with transcription activators (GCN5, ADA2, ADA3 and TRA1), and chromatin modification through histone acetylation (GCN5) and deubiquitination (UBP8). SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA via upstream activating sequences (UASs). SALSA, an altered form of SAGA, may be involved in positive transcriptional regulation. SLIK is proposed to have partly overlapping functions with SAGA. It preferentially acetylates methylated histone H3, at least after activation at the GAL1-10 locus.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8SQS4|TAF5_ENCCU Transcription initiation factor TFIID subunit 5 OS=Encephalitozoon cuniculi (strain GB-M1) GN=TAF5 PE=1 SV=1

 Score =  302 bits (774), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 199/578 (34%), Positives = 300/578 (51%), Gaps = 56/578 (9%)

Query: 146 EDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPH 205
           E +Y  LK +IE+SLD++K +L  +LYP+ +H+Y +L+      +A E   K+  DH   
Sbjct: 20  ETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK 79

Query: 206 YQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQ 265
             E++++  S+     I  N  A TF+++++ + M R    LL   L+E+  T +L I+ 
Sbjct: 80  -SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILN 138

Query: 266 EHLYFDMYEGEATRQDNKAKIYYGMPREPDLQNTIAVPDDDEEEAGEGGDKPKK------ 319
           +HL   +Y G  + +  +      +  E DL  T  +   + E+A  G ++ +       
Sbjct: 139 QHLDIKVYVGPKSEERPQGIETSVVDAEIDL--TTFLVSRECEDAILGDEQYRYDHLETY 196

Query: 320 --KKAKKDSMFSKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPS 377
             +  K+  M  K +   PNA  +            +I+KLK L    KRV +   +LPS
Sbjct: 197 VLQLRKQREMKPKDSVYKPNASQIH----------AEIEKLKDL---CKRVAVNKNNLPS 243

Query: 378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMEC 437
           I CYT+ N  + +T AEIS D+ ++A GF +SY++++SL  + LK +KSS +L   +   
Sbjct: 244 ICCYTIHNTYEGLTAAEISNDLKLMACGFKDSYVEVYSLTNESLKKLKSSSELAKSD--- 300

Query: 438 DDILVRIMDERNAE---TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC 494
               ++ ++E   E   ++  LVGH GPV  L F      L+S SQD T+ LWSL L   
Sbjct: 301 ----IKTLNEEKFEEVGSSYKLVGHSGPVYGLKFFSSNKFLVSSSQDCTVCLWSLDLLCL 356

Query: 495 LVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP 554
           L VYK H  PVW +  +P+ Y+FAS   DR A +W+  +  P RL +   SDV  V+FHP
Sbjct: 357 LAVYKAHAFPVWCVDVAPNDYFFASGAGDRQAIVWSVMTSKPERLIISSLSDVTAVKFHP 416

Query: 555 NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD 614
           NS+Y+ TGSSD  +R+ D  T S VR+  GH   V  +  S CG+FLAS   D  V +WD
Sbjct: 417 NSSYLFTGSSDHRVRMHDISTASVVRIFCGHTDTVTCMDVSHCGKFLASGSKDRTVLLWD 476

Query: 615 LSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHS 674
           + +  LL    GH + V ++ F   G++LAS G D SV+LWD                  
Sbjct: 477 IQSSKLLGKYVGHENTVFSVSFCFYGSVLASCGADNSVRLWD-----------------R 519

Query: 675 ADIKNSSLAYLVRSYKTKASPLLHLIFSRRNIL-LRGP 711
            D K   L     +Y TK +PLL + F  RNI+   GP
Sbjct: 520 TDHKGGCLG----TYYTKNTPLLCVKFGYRNIISCTGP 553

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Regulates the genes involved in ubiquitin-dependent proteolysis during the progression of M-phase of mitosis.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

>sp|O74319|TAF73_SCHPO Transcription initiation factor TFIID subunit taf73 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf73 PE=1 SV=1

 Score =  300 bits (767), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 199/625 (31%), Positives = 304/625 (48%), Gaps = 98/625 (15%)

Query: 140 GDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHL 199
           G    Y   Y  L+ +I+ +LD+YK +L  VLYP+ VH Y++L+       A        
Sbjct: 55  GASETYVQVYILLRDWIDGTLDLYKPKLQKVLYPIFVHSYLDLLQKNDPEMAIYFFESFR 114

Query: 200 MDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKK--- 256
           ++HE  +  D+R L+ +     +   EIA+ +R  ++ I  +R T  LL + L E +   
Sbjct: 115 IEHEVLHGYDIRALAQLKIASDVEEIEIAQLYRKNKYRINFTRSTFDLLVQFLFENEVNG 174

Query: 257 HTVLLNIVQEHLYFDM----------------YEGEATRQD------------------- 281
             +++ ++ +++   +                YE +  + +                   
Sbjct: 175 SGIIIRLLNQYIDIKITMPQVEGKEDPNVQAVYEMDEAKNEQTIISEQEGIPGHSEQLLD 234

Query: 282 -NKAKIYYGM-PREPD----LQNTIAVPDDDEEEAGEGGDK---PKKKKA----KKDSMF 328
            NK  I  G+ P   +    L+N + V D D E   E  +K   P K       +K+++ 
Sbjct: 235 YNKQSIQLGLRPLSEEVVTTLKNLLEVKDKDVEGRNEALNKILHPAKNLVELLTEKENLI 294

Query: 329 SKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALREATKR-VTLGPESL-PSIACYTLLNA 386
           ++ T   P+ P     PLPP K  + ID   +L E+ +  + LG  +  PS+  YT+ N 
Sbjct: 295 NESTLESPSDP-----PLPPTK-MKDIDYFVSLLESEQNSLILGKNATDPSVFMYTMHNT 348

Query: 387 RQQVTCAEISEDVSILAVGFSESYIKLWSLV---PQKLKAMKSSDQLQDIEMECDDILVR 443
              V CA  S+D S+ A+G ++S I L+S     PQ L   + ++ LQ            
Sbjct: 349 LSAVNCAAFSDDASMFALGCADSSIHLYSSTNNGPQPLVGSQ-NEPLQ------------ 395

Query: 444 IMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGH 503
                      +L+GH  PV  +S SP +  +LSCS+D   RLWS      +V Y GH  
Sbjct: 396 ---------KSSLIGHTRPVFGVSISPQKEFILSCSEDGFTRLWSKDTKSTIVKYAGHNA 446

Query: 504 PVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS 563
           P+WD++FSP GYYFA+A HD+ ARLW  +   PLR+FVGH +DVDCV FHPN+ Y+ATGS
Sbjct: 447 PIWDVQFSPFGYYFATASHDQTARLWDVEHAAPLRVFVGHQNDVDCVSFHPNAAYLATGS 506

Query: 564 SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTL 623
           SD T R+WD  TG  VR+   H +PV AL  S  G  LASA   G + +WDL + +    
Sbjct: 507 SDHTTRMWDVRTGGTVRVFNAHHSPVSALCMSADGLSLASADESGIIKVWDLRSSNQHVS 566

Query: 624 LTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLA 683
              H+ +V +L FS D  IL S G D  V  WD              L++  ++ +   +
Sbjct: 567 FVKHSSIVYSLSFSYDNKILVSGGADTDVNFWD--------------LTYRNNLSDGEQS 612

Query: 684 YLVRSYKTKASPLLHLIFSRRNILL 708
            L+ ++KTK + + +L F+RRN  L
Sbjct: 613 PLLFNFKTKNTIIQNLSFTRRNYCL 637

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Regulates the genes involved in ubiquitin-dependent proteolysis during the progression of M-phase of mitosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score =  171 bits (433), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/223 (43%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
           D L+ + D  + +   TL GH   VR ++FSPD +LL S S D T+RLW +       V+
Sbjct: 480 DKLIHVWDVASGDELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVF 539

Query: 499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLW--ATDSYHPLRLFVGHYSDVDCVQFHPNS 556
           +GH H V DI FSP G   AS   D  ARLW  AT + H   +  GH   V  V F P+ 
Sbjct: 540 EGHTHYVLDIAFSPDGSMVASGSRDGTARLWNVATGTEH--AVLKGHTDYVYAVAFSPDG 597

Query: 557 NYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS 616
           + VA+GS D TIRLWD  TG    +L      V +L+FS  G  L   G D  VH+WD++
Sbjct: 598 SMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVH-GSDSTVHLWDVA 656

Query: 617 NGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK 659
           +G  L    GHTD VRA+ FS DG +LAS   D +++LWD A 
Sbjct: 657 SGEALHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWDVAA 699

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	711
332023209	653	Transcription initiation factor TFIID su	0.870	0.947	0.607	0.0
345488317	925	PREDICTED: transcription initiation fact	0.873	0.671	0.602	0.0
307195211	652	Transcription initiation factor TFIID su	0.873	0.952	0.617	0.0
282400160	652	cannonball [Tribolium castaneum] gi|2700	0.870	0.949	0.618	0.0
328787049	642	PREDICTED: transcription initiation fact	0.835	0.925	0.631	0.0
307184077	1302	Transcription initiation factor TFIID su	0.873	0.476	0.602	0.0
380015707	626	PREDICTED: transcription initiation fact	0.828	0.940	0.633	0.0
350412667	645	PREDICTED: transcription initiation fact	0.835	0.920	0.627	0.0
383849948	642	PREDICTED: transcription initiation fact	0.824	0.912	0.625	0.0
242007794	645	transcription initiation factor TFIID su	0.812	0.896	0.640	0.0

>gi|332023209|gb|EGI63465.1| Transcription initiation factor TFIID subunit 5 [Acromyrmex echinatior]

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/644 (60%), Positives = 508/644 (78%), Gaps = 25/644 (3%)

Query: 88  DKNTLITMLKLLRQYNLRGTEEQLKKEINVNDLGID---PNDSEIGDLLSAYESEGDPNL 144
           DKNT++ +L+LL++YN +GTEE  +KE N+ D+ ID    +DS++  +LSAY+SEGDP  
Sbjct: 4   DKNTMLAVLQLLKKYNFKGTEELFRKEANLTDISIDDSQQSDSDVTSVLSAYKSEGDPAQ 63

Query: 145 YEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEP 204
           YE AY +LKKF+E +LD+YK+ELG +LYPVLVHMY+ELVYN H  +A +++ K   + + 
Sbjct: 64  YEKAYSELKKFVEGALDIYKHELGTILYPVLVHMYLELVYNNHSQEAKQLMEKFSGNLQE 123

Query: 205 HYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIV 264
           +YQ+DL++LS+VTKR+Q+  NE+ +TF+S +FIIRMSRDTLS+LKRHLQEKKH+VLLNI+
Sbjct: 124 YYQDDLKRLSNVTKREQMAGNELTDTFKSNQFIIRMSRDTLSILKRHLQEKKHSVLLNII 183

Query: 265 QEHLYFDMYEG-----------------EATRQDNKAKIYYGMPREPDLQNTIAVPDDDE 307
           QEHLYFDMYEG                 EATRQDNK K+YYG+ +EPD+Q     P+ +E
Sbjct: 184 QEHLYFDMYEGVARNKQQIEATSGAMVGEATRQDNKVKVYYGLLKEPDIQ--CMEPNKEE 241

Query: 308 E---EAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALREA 364
           E   E G  GDKPKKKKAKKD +FSKKTKSDPNAP V R+PLP LKD++K++K+K+LREA
Sbjct: 242 EDDKEGGTDGDKPKKKKAKKDPLFSKKTKSDPNAPAVGRMPLPNLKDADKLEKIKSLREA 301

Query: 365 TKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAM 424
           +KRV LGP++LPSI  YT+LN    VT AEI+ED S+LA GFS S IK+WSL+PQKL+ M
Sbjct: 302 SKRVVLGPDTLPSICFYTMLNTVYTVTAAEIAEDSSLLATGFSNSTIKVWSLIPQKLRLM 361

Query: 425 KSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTI 484
           K+ + LQDI  E +D+LVR+MDER +ETT+ L GH GP+  LSFSPDR+LLLS S+D TI
Sbjct: 362 KTGESLQDINREAEDVLVRMMDERTSETTKNLYGHSGPIYSLSFSPDRNLLLSSSEDTTI 421

Query: 485 RLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHY 544
           RLWSL  W C+V YKGH  PVW ++FSPHGYYF+SA +D+ ARLWATDS+ PLR+F GHY
Sbjct: 422 RLWSLHTWTCVVCYKGHLFPVWCVRFSPHGYYFSSASNDKTARLWATDSHQPLRVFSGHY 481

Query: 545 SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASA 604
           SDVD +QFHPNSNY+A+GSSD T+RLWDCVTG+ VRL+TGHK P+++L+FS  GRFLASA
Sbjct: 482 SDVDVIQFHPNSNYIASGSSDMTVRLWDCVTGNQVRLMTGHKGPIFSLAFSTEGRFLASA 541

Query: 605 GGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEV 664
           G D  V +WDL++GHL+  L+GHT  +  L FSRDGNIL S   DC++KLWDF KL++E+
Sbjct: 542 GADHRVLVWDLAHGHLVAALSGHTGNIHCLSFSRDGNILVSGSLDCTLKLWDFIKLAEEM 601

Query: 665 GTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILL 708
             E+VN+SH+ D+K +S +YL+R++ TK++ +L L FSRRN+LL
Sbjct: 602 SLEDVNVSHNPDVKTNSESYLLRTFPTKSTSVLTLHFSRRNLLL 645

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488317|ref|XP_001605730.2| PREDICTED: transcription initiation factor TFIID subunit 5 [Nasonia vitripennis]

 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/641 (60%), Positives = 504/641 (78%), Gaps = 20/641 (3%)

Query: 88  DKNTLITMLKLLRQYNLRGTEEQLKKEINVNDLGID---PNDSEIGDLLSAYESEGDPNL 144
           DK+T++ +L+LL +YN + TEE  +KE N+ D+ ++    ++SE+  +LSAY+SEGDP L
Sbjct: 4   DKSTMLALLQLLHKYNFKETEELFRKEANLKDVTVEDTPQSESEVNSVLSAYKSEGDPAL 63

Query: 145 YEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEP 204
           YE +Y +LKKF+E SLD+YK+ELG +LYPVLVHMY+ELVYN H  +A +++ KH    E 
Sbjct: 64  YEKSYGELKKFVEGSLDIYKHELGTILYPVLVHMYLELVYNNHSEEAKQLIEKHSASLEE 123

Query: 205 HYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIV 264
           +YQ DL+KL+ VTKR+ +  NE+ +TF+S +FIIRMSRDTLS+LKR+LQEKKH++LLNI+
Sbjct: 124 YYQNDLKKLAHVTKREHMAGNELTDTFKSNQFIIRMSRDTLSILKRYLQEKKHSILLNII 183

Query: 265 QEHLYFDMYEG-----------------EATRQDNKAKIYYGMPREPDLQNTIAVPDDDE 307
           QEHLYFDMYEG                 EATRQDNKAK+YYG+ +EPD+QN  +  +++E
Sbjct: 184 QEHLYFDMYEGVARNKSQIEATSGALVGEATRQDNKAKVYYGLLKEPDIQNVSSAANEEE 243

Query: 308 EEAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALREATKR 367
           EE  +   +PKKKK KKD +FSKKTKSDPNAPP+ R+PLP LKD +K++K+KALREA+KR
Sbjct: 244 EEDRDKDGQPKKKKTKKDPLFSKKTKSDPNAPPIGRMPLPNLKDVDKLEKIKALREASKR 303

Query: 368 VTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSS 427
           V LG +SLPSI  YTL+N+   V  AE++ED S+LAVGFS+S IK++SLVPQKL+ MK  
Sbjct: 304 VILGSDSLPSICFYTLMNSVNTVIAAEVAEDSSLLAVGFSDSSIKVFSLVPQKLRMMKDG 363

Query: 428 DQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLW 487
           +QL D++ E DD+LVR+MDE+ AE+ RTL GH GPV  LSFSPDR+LLLSCS+D T+RLW
Sbjct: 364 EQLADVDREADDVLVRMMDEKTAESVRTLYGHSGPVYCLSFSPDRNLLLSCSEDGTVRLW 423

Query: 488 SLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDV 547
           SL  W C+V YKGH  PVW ++FSPHGYYFA+  HD+ ARLWATDS+ PLR+F GHYSDV
Sbjct: 424 SLHTWTCVVCYKGHLFPVWSVRFSPHGYYFATGSHDKTARLWATDSHQPLRIFAGHYSDV 483

Query: 548 DCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD 607
           D VQFHPNSNY+A+GSSD TIRLWDCV+G+ VRL+TGHKAP+YAL+FS+ GRFLASAG D
Sbjct: 484 DVVQFHPNSNYIASGSSDMTIRLWDCVSGNQVRLMTGHKAPIYALAFSIEGRFLASAGAD 543

Query: 608 GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTE 667
             V +WDL++GHL+  L+ HT  +  L FSR GN+L S   DCS+KLWDF KL++E+  E
Sbjct: 544 SRVLIWDLAHGHLVVALSSHTASIYCLSFSRCGNLLLSGSLDCSIKLWDFTKLAEEMSLE 603

Query: 668 EVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILL 708
           +VN+SH+ D+K ++ AYL+RS+ TK SP+L L F+RRN++ 
Sbjct: 604 DVNVSHNPDVKTNTEAYLLRSFGTKNSPILGLHFTRRNLVF 644

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195211|gb|EFN77195.1| Transcription initiation factor TFIID subunit 5 [Harpegnathos saltator]

 Score =  810 bits (2091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/641 (61%), Positives = 508/641 (79%), Gaps = 20/641 (3%)

Query: 88  DKNTLITMLKLLRQYNLRGTEEQLKKEINVNDLGIDPN---DSEIGDLLSAYESEGDPNL 144
           DK+T++ +L+LL++YNL+ TEE  +KE N+ D+ I+ +   DSE+  +LSAY+SEGDP L
Sbjct: 4   DKSTMLAVLQLLKKYNLKSTEELFRKEANLQDVSIEDSQQTDSEVTSVLSAYKSEGDPAL 63

Query: 145 YEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEP 204
           YE AY +LKKF+E +LD+YK+ELG +LYPVLVHMY+ELVYN H  +A +++ K   + E 
Sbjct: 64  YEKAYSELKKFVEGALDIYKHELGTILYPVLVHMYVELVYNNHPEEAKQLMEKFRGNLEE 123

Query: 205 HYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIV 264
           +YQ+DL++LS+VTKR+Q+  NE+ +TF+S +FIIRMSRDTLS+LKRHLQEKKH+VLLNI+
Sbjct: 124 YYQDDLKRLSNVTKREQMAGNELTDTFKSNQFIIRMSRDTLSILKRHLQEKKHSVLLNII 183

Query: 265 QEHLYFDMYEG-----------------EATRQDNKAKIYYGMPREPDLQNTIAVPDDDE 307
           QEHLYFDMYEG                 EATRQDNKAK+YYG+ +EPD+Q      ++++
Sbjct: 184 QEHLYFDMYEGVARNKQQIDATSGATVGEATRQDNKAKVYYGLLKEPDIQCVPPAEEEED 243

Query: 308 EEAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALREATKR 367
           +  G  GDKPKKKKAKKD +FSKKTKSDPNAPPV R+PLP LKD +K++K+KALREA+KR
Sbjct: 244 DTGGGDGDKPKKKKAKKDPLFSKKTKSDPNAPPVGRMPLPNLKDVDKLEKVKALREASKR 303

Query: 368 VTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSS 427
           V +GP++LPSI  YTL+NA   VT AE+SED S+LA GF +S IK+WSLVPQKL+ MK+ 
Sbjct: 304 VIVGPDTLPSICFYTLMNAVHTVTSAEVSEDSSLLATGFRDSGIKVWSLVPQKLRLMKTG 363

Query: 428 DQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLW 487
           ++LQDI+ E DD+LVR+MDER +ET R L GH GPV  LSFSPDR+LLLS S+D TIRLW
Sbjct: 364 EELQDIDREADDVLVRMMDERTSETARNLYGHSGPVYSLSFSPDRNLLLSSSEDATIRLW 423

Query: 488 SLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDV 547
           SL  W C+V YKGH  PVW ++FSPHGYYF SA +DR ARLWATDS+ PLR+F GHYSDV
Sbjct: 424 SLHTWTCVVCYKGHLFPVWCVRFSPHGYYFTSASYDRTARLWATDSHQPLRIFAGHYSDV 483

Query: 548 DCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD 607
           + VQFHPNSNYVATGSSD T+RLWDCVTGS VRL+TGHK P+Y+L+FS  GRFLASAG D
Sbjct: 484 NVVQFHPNSNYVATGSSDMTVRLWDCVTGSQVRLMTGHKGPIYSLAFSTEGRFLASAGTD 543

Query: 608 GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTE 667
             V +WDL++GHL+  L+GHT  +  L FSRDGNIL S   D +V+LWDF KL++E+  E
Sbjct: 544 HRVLVWDLAHGHLVAALSGHTGNIECLSFSRDGNILVSGSLDYTVRLWDFTKLAEEMSLE 603

Query: 668 EVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILL 708
           +VN+SH+ D+K ++ +YL+R++ TK + +L L FSRRN+LL
Sbjct: 604 DVNVSHNPDVKTNAESYLLRTFPTKNTSILTLHFSRRNLLL 644

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|282400160|ref|NP_001164203.1| cannonball [Tribolium castaneum] gi|270008125|gb|EFA04573.1| cannonball [Tribolium castaneum]

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/643 (61%), Positives = 513/643 (79%), Gaps = 24/643 (3%)

Query: 88  DKNTLITMLKLLRQYNLRGTEEQLKKEINV-NDLGIDP--NDSEIGDLLSAYESEGDPNL 144
           +K+ L  +L++L++YNL+GTEE L+KE N+ N++   P   +S++  +L+ Y+S+GDP  
Sbjct: 2   EKSQLAAVLQILKKYNLKGTEELLRKEANLGNNIADGPLQQNSDVSSVLTGYKSDGDPET 61

Query: 145 YEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEP 204
           YED+Y +LK+F+E SLD+YK+ELG++LYPVLVHMY+ELVYNGH  +A  ++ K   + + 
Sbjct: 62  YEDSYMELKRFVEGSLDIYKHELGMILYPVLVHMYLELVYNGHTEKAINLMKKFGPEQDS 121

Query: 205 HYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIV 264
           +YQEDLRKL+ VTKRD +  NE+ +TF+S +FIIRMSRDTLSLLKRHL +KK +VLLNI+
Sbjct: 122 YYQEDLRKLALVTKRDHMNGNELTDTFKSNQFIIRMSRDTLSLLKRHLNDKKASVLLNII 181

Query: 265 QEHLYFDMYEG-----------------EATRQDNKAKIYYGMPREPDLQNTIAVPDDDE 307
           QEHLYFDMYEG                 EA RQDNK K+YYG+P+ PD+Q  +A P +DE
Sbjct: 182 QEHLYFDMYEGVARNKSQIDATSGAVGGEAKRQDNKTKVYYGIPKAPDIQ-ALAAPVEDE 240

Query: 308 EEAGE--GGDKPKKKKAKKDSMFSKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALREAT 365
           +E GE    DKPKKKKAKKD +FSKKTK+DPNAPP DRIP+P ++D +K +K+KA REA+
Sbjct: 241 DEGGEQDNPDKPKKKKAKKDPLFSKKTKNDPNAPPPDRIPVPDMRDHDKYEKVKAYREAS 300

Query: 366 KRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMK 425
           KRVTLGP+ LPS+ CYTLLNA   V CAEI+ED S+LAVGFS+S +K+W+LVPQKLKAMK
Sbjct: 301 KRVTLGPDYLPSVCCYTLLNANHTVNCAEITEDSSMLAVGFSDSIVKVWTLVPQKLKAMK 360

Query: 426 SSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIR 485
           S +QL+D+ ++ +D++VR+MDER+ ET+R+L GH GPV  +SFSPD++LL+SCS+D TIR
Sbjct: 361 SGEQLEDVNVDVEDVVVRMMDERSGETSRSLYGHSGPVYSVSFSPDKTLLISCSEDTTIR 420

Query: 486 LWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS 545
           LWSL +W CLVVYKGH  PVWD+KFSP GYYFASA +DR ARLWATD Y PLRLF GH+S
Sbjct: 421 LWSLQIWTCLVVYKGHMFPVWDVKFSPLGYYFASASYDRTARLWATDHYQPLRLFAGHFS 480

Query: 546 DVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAG 605
           DVDCVQFHPNSNYVATGSSDR + LWDC TG+HVRL+TGHK+P+ +L+FSVCGRFLASAG
Sbjct: 481 DVDCVQFHPNSNYVATGSSDRRVCLWDCTTGNHVRLMTGHKSPIMSLAFSVCGRFLASAG 540

Query: 606 GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVG 665
            D  V +WDLS+GHL+  LTGH   + AL FSR GNIL S G DC +K+WDF KL++E+ 
Sbjct: 541 VDCKVLVWDLSHGHLVAELTGHEKPIHALAFSRCGNILVSGGLDCLLKVWDFTKLTEEIS 600

Query: 666 TEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILL 708
           +EEVN+SH+ D++     YL+RS+ TK+SPL+ L F+RRN+LL
Sbjct: 601 SEEVNVSHNPDVRIGD-DYLLRSFATKSSPLISLHFTRRNLLL 642

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787049|ref|XP_001120374.2| PREDICTED: transcription initiation factor TFIID subunit 5 [Apis mellifera]

 Score =  806 bits (2082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/614 (63%), Positives = 490/614 (79%), Gaps = 20/614 (3%)

Query: 88  DKNTLITMLKLLRQYNLRGTEEQLKKEINVNDLGIDPN---DSEIGDLLSAYESEGDPNL 144
           DK+T++ +L+LLR+YNL+GTEE  KKE N+ D+  D     DSE+  +LSAY+SEGDP L
Sbjct: 4   DKSTMLAVLQLLRKYNLKGTEELFKKEANLTDISPDETQQTDSEVNSVLSAYKSEGDPAL 63

Query: 145 YEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEP 204
           YE AY +LKKF+E SLD+YK+ELG +LYPVLVHMY+ELVYN H  +A  +L K   + E 
Sbjct: 64  YEKAYSELKKFVEGSLDIYKHELGTILYPVLVHMYLELVYNNHSEEARILLEKFGGNLEE 123

Query: 205 HYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIV 264
           +YQ DL++LS+VTKR+Q+  NE+ +TF+S +FIIRMSRDTLS+LKRHLQEKKH+VLLNI+
Sbjct: 124 YYQNDLKRLSNVTKREQMAGNELTDTFKSNQFIIRMSRDTLSILKRHLQEKKHSVLLNII 183

Query: 265 QEHLYFDMYEG-----------------EATRQDNKAKIYYGMPREPDLQNTIAVPDDDE 307
           QEHLYFDMYEG                 EATRQDNKAK+YYG+ +EPD+Q      ++++
Sbjct: 184 QEHLYFDMYEGVARNKQQIDATSGAVVGEATRQDNKAKVYYGLLKEPDIQCMPPTEEEED 243

Query: 308 EEAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALREATKR 367
           +  G  GDKPKKKKAKKD +FSKKTKSDPNAPPV R+PLP LKD++K++K+KALREA+KR
Sbjct: 244 DTGGVDGDKPKKKKAKKDPLFSKKTKSDPNAPPVGRMPLPNLKDADKLEKVKALREASKR 303

Query: 368 VTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSS 427
           V LGP++LPSI  YTLLNA   VT AE++ED S+LA+GFS+S IK+WSLVPQKL+ MK+ 
Sbjct: 304 VILGPDTLPSICFYTLLNAVHTVTAAEVAEDSSLLAIGFSDSCIKVWSLVPQKLRLMKTG 363

Query: 428 DQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLW 487
           +QLQDI+ E DD+LVR+MD+R AET+R+L GH GP+  LSFSPDR+LLLS S+D+T+RLW
Sbjct: 364 EQLQDIDREADDVLVRMMDDRTAETSRSLFGHNGPIYNLSFSPDRNLLLSSSEDSTVRLW 423

Query: 488 SLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDV 547
           SL  W C+V YKGH  PVW ++FSPHGYYFA++ HD+ ARLWATDS+ PLR+F GHYSDV
Sbjct: 424 SLHTWTCVVCYKGHLFPVWCVRFSPHGYYFATSSHDKTARLWATDSHQPLRIFAGHYSDV 483

Query: 548 DCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD 607
           D VQFHPNSNYVATGSSD T+RLWDCVTGS VRL+TGHKAP+Y+L+FS  GRFLASAG D
Sbjct: 484 DVVQFHPNSNYVATGSSDMTVRLWDCVTGSQVRLMTGHKAPIYSLAFSAEGRFLASAGAD 543

Query: 608 GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTE 667
             V +WDL++GHL+  L+ H+  +  L FSRDGNIL S   DC++KLWDF KL++E+  E
Sbjct: 544 HRVLVWDLAHGHLVAALSSHSGTIHCLSFSRDGNILVSGSLDCTIKLWDFTKLAEEMSLE 603

Query: 668 EVNLSHSADIKNSS 681
           +VN+SH+ D+   S
Sbjct: 604 DVNVSHNPDVLECS 617

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184077|gb|EFN70612.1| Transcription initiation factor TFIID subunit 5 [Camponotus floridanus]

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/641 (60%), Positives = 504/641 (78%), Gaps = 20/641 (3%)

Query: 88  DKNTLITMLKLLRQYNLRGTEEQLKKEINVNDLGID---PNDSEIGDLLSAYESEGDPNL 144
           DK+T++ +L+LL++YNL+GTEE  +KE N+ D+  +     DSE+  +L AY+SEGDP  
Sbjct: 4   DKSTMLAVLQLLKKYNLKGTEELFRKEANLTDISAEEAQKTDSEVNSVLRAYKSEGDPAQ 63

Query: 145 YEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEP 204
           YE AY +LKKF+E +LD+YK+ELG +LYPVLVH Y+ELVYN H  +A +++ K     E 
Sbjct: 64  YEKAYSELKKFVEGALDIYKHELGTILYPVLVHTYLELVYNNHSEEAKQLMEKFGGSLEE 123

Query: 205 HYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIV 264
           +YQ DL++LS+VTKR+Q+  NE  +TF+S +FIIRMSRDT+S+LKRHLQEKKH +LLNI+
Sbjct: 124 YYQNDLKRLSNVTKREQMAENEFIDTFKSNQFIIRMSRDTISILKRHLQEKKHNLLLNII 183

Query: 265 QEHLYFDMYEG-----------------EATRQDNKAKIYYGMPREPDLQNTIAVPDDDE 307
           QEHLY DMYEG                 EATRQDNKAK+YYG+ +EPD+Q      ++++
Sbjct: 184 QEHLYLDMYEGVARNKEQIDATSGAMVGEATRQDNKAKVYYGLLKEPDIQCVAPAEEEED 243

Query: 308 EEAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALREATKR 367
           +  G  GDKPKKKKAKKD +FSKKTKSDPNAPPV R+PLP LKD++K++K+KALREA+KR
Sbjct: 244 DTGGGDGDKPKKKKAKKDPLFSKKTKSDPNAPPVGRMPLPNLKDADKLEKVKALREASKR 303

Query: 368 VTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSS 427
           V LGP++LPSI  YTLLN    VT AE++ED S+LA+GFS+S IK+WSLVPQKL+ MK+ 
Sbjct: 304 VILGPDTLPSICFYTLLNTVHTVTVAEVAEDSSLLAIGFSDSGIKVWSLVPQKLRLMKTG 363

Query: 428 DQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLW 487
           + LQD+E E +D+LVR+MD+R +ETT+ L GH GP+  LSFSPDR+LLLS ++D TIRLW
Sbjct: 364 ELLQDVEREAEDVLVRMMDDRTSETTKNLYGHSGPIYSLSFSPDRNLLLSSAEDTTIRLW 423

Query: 488 SLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDV 547
           SL  W C+V YKGH  PVW ++FSPHGYYFASA +D+ ARLWATDS+ PLR+F GHYSDV
Sbjct: 424 SLHTWTCVVCYKGHLFPVWCVRFSPHGYYFASASNDKTARLWATDSHQPLRIFAGHYSDV 483

Query: 548 DCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD 607
           D +QFHPNSNYVATGSSD T+RLWDCVTGS VRL+TGHK P+++L+FS  GRFLASAG D
Sbjct: 484 DVIQFHPNSNYVATGSSDMTVRLWDCVTGSQVRLMTGHKRPIFSLAFSTEGRFLASAGAD 543

Query: 608 GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTE 667
             V +WDL++GHL+  L+GHT+ +  L FSRDGNIL S   DC++KLWDF KL++E+  E
Sbjct: 544 HRVLVWDLAHGHLVAALSGHTNNIHCLSFSRDGNILVSGSLDCTLKLWDFTKLAEEMSLE 603

Query: 668 EVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILL 708
           +VN+SH+ D+K ++ +YL+R++ TK + +L + FSRRN+LL
Sbjct: 604 DVNVSHNPDVKTNAESYLLRTFATKNTSVLTVHFSRRNLLL 644

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015707|ref|XP_003691838.1| PREDICTED: transcription initiation factor TFIID subunit 5 [Apis florea]

 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/609 (63%), Positives = 488/609 (80%), Gaps = 20/609 (3%)

Query: 88  DKNTLITMLKLLRQYNLRGTEEQLKKEINVNDLGIDPN---DSEIGDLLSAYESEGDPNL 144
           DK+T++ +L+LLR+YNL+GTEE  KKE N+ D+  D     DSE+  +LSAY+SEGDP L
Sbjct: 4   DKSTMLAVLQLLRKYNLKGTEELFKKEANLTDISPDETQQTDSEVNSVLSAYKSEGDPAL 63

Query: 145 YEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEP 204
           YE AY +LKKF+E SLD+YK+ELG +LYPVLVHMY+ELVYN H  +A  +L K   + E 
Sbjct: 64  YEKAYSELKKFVEGSLDIYKHELGTILYPVLVHMYLELVYNNHSEEARLLLEKFGGNLEE 123

Query: 205 HYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIV 264
           +YQ DL++LS+VTKR+Q+  NE+ +TF+S +FIIRMSRDTLS+LKRHLQEKKH+VLLNI+
Sbjct: 124 YYQNDLKRLSNVTKREQMAGNELTDTFKSNQFIIRMSRDTLSILKRHLQEKKHSVLLNII 183

Query: 265 QEHLYFDMYEG-----------------EATRQDNKAKIYYGMPREPDLQNTIAVPDDDE 307
           QEHLYFDMYEG                 EATRQDNKAK+YYG+ +EPD+Q      ++++
Sbjct: 184 QEHLYFDMYEGVARNKQQIDATSGAVVGEATRQDNKAKVYYGLLKEPDIQCMPPTEEEED 243

Query: 308 EEAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALREATKR 367
           +  G  GDKPKKKKAKKD +FSKKTKSDPNAPPV R+PLP LKD++K++K+KALREA+KR
Sbjct: 244 DTGGVDGDKPKKKKAKKDPLFSKKTKSDPNAPPVGRMPLPNLKDADKLEKVKALREASKR 303

Query: 368 VTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSS 427
           V LGP++LPSI  YTLLNA   VT AE++ED S+LA+GFS+S IK+WSLVPQKL+ MK+ 
Sbjct: 304 VILGPDTLPSICFYTLLNAVHTVTAAEVAEDSSLLAIGFSDSCIKVWSLVPQKLRLMKTG 363

Query: 428 DQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLW 487
           +QLQDI+ E DD+LVR+MD+R AET+R+L GH GP+  LSFSPDR+LLLS S+D+T+RLW
Sbjct: 364 EQLQDIDREADDVLVRMMDDRTAETSRSLFGHNGPIYNLSFSPDRNLLLSSSEDSTVRLW 423

Query: 488 SLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDV 547
           SL  W C+V YKGH  PVW ++FSPHGYYFA++ HD+ ARLWATDS+ PLR+F GHYSDV
Sbjct: 424 SLHTWTCVVCYKGHLFPVWCVRFSPHGYYFATSSHDKTARLWATDSHQPLRIFAGHYSDV 483

Query: 548 DCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD 607
           D +QFHPNSNYVATGSSD T+RLWDCVTGS VRL+TGHKAP+Y+L+FS  GRFLASAG D
Sbjct: 484 DVMQFHPNSNYVATGSSDMTVRLWDCVTGSQVRLMTGHKAPIYSLAFSAEGRFLASAGAD 543

Query: 608 GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTE 667
             V +WDL++GHL+  L+ H+  +  L FSRDGNIL S   DC++KLWDF KL++E+  E
Sbjct: 544 HRVLVWDLAHGHLVAALSSHSGTIHCLSFSRDGNILVSGSLDCTIKLWDFTKLAEEMSLE 603

Query: 668 EVNLSHSAD 676
           +VN+SH+ D
Sbjct: 604 DVNVSHNPD 612

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412667|ref|XP_003489723.1| PREDICTED: transcription initiation factor TFIID subunit 5-like [Bombus impatiens]

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/614 (62%), Positives = 487/614 (79%), Gaps = 20/614 (3%)

Query: 88  DKNTLITMLKLLRQYNLRGTEEQLKKEINVNDLGIDP---NDSEIGDLLSAYESEGDPNL 144
           DK+T++ +L+LLR+YNL+GTEE  KKE N+ D+  D     DSE+  +LSAY+SEGDP L
Sbjct: 4   DKSTMLAVLQLLRKYNLKGTEELFKKEANLIDISPDEAQQTDSEVNSVLSAYKSEGDPAL 63

Query: 145 YEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEP 204
           YE AY +LKKF+E SLD+YK+ELG +LYPVLVHMY+ELVYN H  +A ++L +   + E 
Sbjct: 64  YEKAYSELKKFVEGSLDIYKHELGTILYPVLVHMYLELVYNNHSEEAKQLLERFGGNLEE 123

Query: 205 HYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIV 264
           +YQ DL++LS+VTKR+Q+  NE+ +TF+S +FIIRMSRDTLS+LKRHLQEKKH VLLNI+
Sbjct: 124 YYQNDLKRLSNVTKREQMAGNELTDTFKSNQFIIRMSRDTLSILKRHLQEKKHCVLLNII 183

Query: 265 QEHLYFDMYEG-----------------EATRQDNKAKIYYGMPREPDLQNTIAVPDDDE 307
           QEHLYFDMYEG                 EATRQDNKAK+YYG+ +EPD+Q      ++++
Sbjct: 184 QEHLYFDMYEGVARNKQQIDATSGAMVGEATRQDNKAKVYYGLLKEPDIQCMPPTEEEED 243

Query: 308 EEAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALREATKR 367
           +  G  GDKPKKKKAKKD +FSKKTKSDPNAPPV R+PLP LKD++K++K KALREA+KR
Sbjct: 244 DTGGVDGDKPKKKKAKKDPLFSKKTKSDPNAPPVGRMPLPNLKDADKLEKGKALREASKR 303

Query: 368 VTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSS 427
           V LGP++LPSI  YTLLNA   VT AE++ED S+LA+GF +S IK+WSLVPQKL+ MK+ 
Sbjct: 304 VVLGPDTLPSICFYTLLNAVNSVTAAEVAEDSSLLAIGFGDSCIKVWSLVPQKLRLMKTG 363

Query: 428 DQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLW 487
           +QLQDI+ E DD+LVR+MD+R AET+R+L GH GPV  LSFSPDR+LLLS S+D+T+RLW
Sbjct: 364 EQLQDIDREADDVLVRMMDDRTAETSRSLFGHNGPVYSLSFSPDRNLLLSSSEDSTVRLW 423

Query: 488 SLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDV 547
           SL  W C+V YKGH  PVW ++FSPHGYYFA++ HD+ ARLWATDS+ PLR+F GHYSD+
Sbjct: 424 SLHTWTCVVCYKGHLFPVWCVRFSPHGYYFATSSHDKTARLWATDSHQPLRIFAGHYSDI 483

Query: 548 DCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD 607
           D VQFHPNSNYVATGSSD T+RLWDCV GS VRL+TGHKAP+Y+L+FS  GRFLASAG D
Sbjct: 484 DVVQFHPNSNYVATGSSDMTVRLWDCVNGSQVRLMTGHKAPIYSLAFSAEGRFLASAGAD 543

Query: 608 GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTE 667
             V +WDL++GHL+  L+ H+  +  L FSRDGNIL S   DC++KLWDF KL++E+  E
Sbjct: 544 HRVLVWDLAHGHLVAALSSHSGTIHCLSFSRDGNILVSGSLDCTIKLWDFTKLAEEMSLE 603

Query: 668 EVNLSHSADIKNSS 681
           +VN+SH+ D+   S
Sbjct: 604 DVNVSHNPDVTECS 617

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849948|ref|XP_003700595.1| PREDICTED: transcription initiation factor TFIID subunit 5 [Megachile rotundata]

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/612 (62%), Positives = 480/612 (78%), Gaps = 26/612 (4%)

Query: 88  DKNTLITMLKLLRQYNLRGTEEQLKKEINVNDLGID---PNDSEIGDLLSAYESEGDPNL 144
           DK+T++ +L+LLR+YNL+GTEE  KKE N+ D+  D     DSE+  +LSAY+SEGDP L
Sbjct: 4   DKSTMLAVLQLLRKYNLKGTEELFKKEANLTDISADDAQQTDSEVNSVLSAYKSEGDPAL 63

Query: 145 YEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEP 204
           YE AY +LKKF+E SLD+YK+ELG +LYPVLVHMY+ELVYN H  +A ++L K   + E 
Sbjct: 64  YEKAYSELKKFVEGSLDIYKHELGTILYPVLVHMYLELVYNNHSEEAKQLLEKFGGNLEE 123

Query: 205 HYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIV 264
           +YQ DL++LS+VTKR+Q+  NE+ +TF+S +FIIRMSRDTLS+LKRHLQEKKH+VLLNI+
Sbjct: 124 YYQNDLKRLSNVTKREQMAGNELTDTFKSNQFIIRMSRDTLSILKRHLQEKKHSVLLNII 183

Query: 265 QEHLYFDMYEG-----------------EATRQDNKAKIYYGMPREPDLQNTIAVPDDDE 307
           QEHLYFDMYEG                 EATRQDNKAK+YYG+ +EPD+Q    +P  +E
Sbjct: 184 QEHLYFDMYEGVARNKQQIDATSGAVVGEATRQDNKAKVYYGLLKEPDIQ---CMPPTEE 240

Query: 308 EEAGEGGDKPKKKKAKKDS---MFSKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALREA 364
           EE   GG    K K KK     +FSKKTKSDPNAPPV R+PLP LKD++K++K+KALREA
Sbjct: 241 EEDDTGGADGDKPKKKKAKKDPLFSKKTKSDPNAPPVGRMPLPNLKDADKLEKVKALREA 300

Query: 365 TKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAM 424
           +KRV LGP++LPSI  YTLLN    VT AE++ED S+LA+GFS+S IK+WSLVPQKL+ M
Sbjct: 301 SKRVILGPDTLPSICFYTLLNTVHTVTAAEVAEDSSLLAIGFSDSCIKVWSLVPQKLRLM 360

Query: 425 KSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTI 484
           K+ +QLQDI+ E DD+LVR+MD+R AET+R L GH GPV  LSFSPDR+LLLS S+D+T+
Sbjct: 361 KTGEQLQDIDREADDVLVRMMDDRTAETSRPLFGHNGPVYSLSFSPDRNLLLSSSEDSTV 420

Query: 485 RLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHY 544
           RLWSL  W C+V YKGH  PVW ++FSPHGYYFA++ HD+ ARLWATDS+ PLR+F GHY
Sbjct: 421 RLWSLHTWTCVVCYKGHLFPVWCVRFSPHGYYFATSSHDKTARLWATDSHQPLRIFAGHY 480

Query: 545 SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASA 604
           SDVD VQFHPNSNYVATGSSD T+RLWDCVTGS VRL+TGHKAP+Y+L+FS  GRFLASA
Sbjct: 481 SDVDVVQFHPNSNYVATGSSDMTVRLWDCVTGSQVRLMTGHKAPIYSLAFSAEGRFLASA 540

Query: 605 GGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEV 664
           G D  V +WDL++GHL+  L+ H+  +  L FSRDGNIL S   D ++KLWDF KL++E+
Sbjct: 541 GADHRVLVWDLAHGHLVAALSSHSGTIHCLSFSRDGNILVSGSLDSTIKLWDFTKLAEEM 600

Query: 665 GTEEVNLSHSAD 676
             E+VN+SH+ D
Sbjct: 601 SLEDVNVSHNPD 612

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007794|ref|XP_002424707.1| transcription initiation factor TFIID subunit, putative [Pediculus humanus corporis] gi|212508200|gb|EEB11969.1| transcription initiation factor TFIID subunit, putative [Pediculus humanus corporis]

 Score =  800 bits (2065), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/606 (64%), Positives = 484/606 (79%), Gaps = 28/606 (4%)

Query: 87  PDKNTLITMLKLLRQYNLRGTEEQLKKEINVN-------DLGIDPNDSEIGDLLSAYESE 139
           PDK T++ +L+LLR+YNL+ TE+ LKKE N++       +LG   N+SE+  +LSAY+SE
Sbjct: 14  PDKATILALLQLLRKYNLKATEDILKKETNIDLTVPGTHELG--QNESEVSSVLSAYKSE 71

Query: 140 GDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHL 199
           GDP +YE  Y DLK FIENSLD+YK+ELG +LYPV VHMY+ELVYN HE +A + +++  
Sbjct: 72  GDPKIYESVYVDLKNFIENSLDIYKHELGTILYPVFVHMYLELVYNNHEDEAIKFMNRFK 131

Query: 200 MDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTV 259
            D E +YQ+DLRKLS VTK+DQ++ NE+ +TF+S+EFIIRMSRDTLSLLKRHL EKKH+V
Sbjct: 132 CDQEDYYQDDLRKLSYVTKKDQMKGNELTDTFKSSEFIIRMSRDTLSLLKRHLLEKKHSV 191

Query: 260 LLNIVQEHLYFDMYEG-----------------EATRQDNKAKIYYGMPREPDLQNTIAV 302
           +LNI+QEHLYFDMYEG                 EATRQDNKAK+YYG+ +EPDLQ  I  
Sbjct: 192 VLNIIQEHLYFDMYEGVARNKAQIDATAGAVVGEATRQDNKAKVYYGLLKEPDLQ-FIPA 250

Query: 303 PDDDEEEAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALR 362
            +++ E     GDKPKKKK+KKD +FSKKTK+DPNAPP+DR+PLP LKD++K++K+KALR
Sbjct: 251 EEEEVEGESGDGDKPKKKKSKKDPLFSKKTKTDPNAPPLDRMPLPELKDADKLEKIKALR 310

Query: 363 EATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLK 422
           EA+KRVTLGP++LPS+  YTLLNA   VTCAEI ED S+L VGF++S IK+WSL PQKLK
Sbjct: 311 EASKRVTLGPDALPSVCMYTLLNANSTVTCAEICEDSSLLGVGFTDSIIKIWSLTPQKLK 370

Query: 423 AMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDN 482
           AMKS++ LQDI+ E DD+LVR+MD+++    R+L GH GPV KLSFSPDR+LLLSCS+D 
Sbjct: 371 AMKSAEALQDIDREADDVLVRMMDDKST-NVRSLCGHSGPVYKLSFSPDRTLLLSCSEDA 429

Query: 483 TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG 542
           TIRLWSL LW CLV YKGH  P+WD+KFSPHGYYFASA HDR ARLW TD + PLR+F G
Sbjct: 430 TIRLWSLQLWTCLVSYKGHTFPIWDVKFSPHGYYFASASHDRTARLWVTDQHQPLRIFTG 489

Query: 543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLA 602
           H+SDVDCVQFHPNSNY+ATGSSDRT+RLWD VTG+ VRL+TGHK  +Y+L+FSV GRFLA
Sbjct: 490 HFSDVDCVQFHPNSNYIATGSSDRTVRLWDNVTGTQVRLMTGHKGQIYSLAFSVEGRFLA 549

Query: 603 SAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSD 662
           SAG D  + +WDL++GHLL  L+GH+  + ALCFSRDGN+L S   DC+VK+WDF KL +
Sbjct: 550 SAGSDFKIMLWDLAHGHLLASLSGHSSTIYALCFSRDGNLLTSGSLDCTVKIWDFTKLGE 609

Query: 663 EVGTEE 668
           E+  E+
Sbjct: 610 EISLED 615

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	711
FB|FBgn0010356	704	Taf5 "TBP-associated factor 5"	0.609	0.615	0.522	2.2e-164
UNIPROTKB|E1C4U3	780	E1C4U3 "Uncharacterized protei	0.822	0.75	0.473	2.6e-160
UNIPROTKB|E1BEN8	800	TAF5 "Uncharacterized protein"	0.827	0.735	0.468	2.9e-159
UNIPROTKB|E2RE41	801	TAF5 "Uncharacterized protein"	0.827	0.734	0.467	2.9e-159
RGD|1311332	798	Taf5 "TAF5 RNA polymerase II,	0.812	0.724	0.474	6e-159
UNIPROTKB|Q15542	800	TAF5 "Transcription initiation	0.827	0.735	0.467	1.6e-158
MGI|MGI:2442144	801	Taf5 "TAF5 RNA polymerase II,	0.812	0.721	0.470	2.6e-158
ZFIN|ZDB-GENE-051120-180	756	taf5 "TAF5 RNA polymerase II,	0.812	0.764	0.469	2.4e-153
UNIPROTKB|F1S845	542	TAF5 "Uncharacterized protein"	0.521	0.684	0.523	1.7e-139
DICTYBASE|DDB_G0287337	948	taf5 "TFIID subunit" [Dictyost	0.374	0.280	0.465	9.5e-106

FB|FBgn0010356 Taf5 "TBP-associated factor 5" [Drosophila melanogaster (taxid:7227)]

 Score = 1228 (437.3 bits), Expect = 2.2e-164, Sum P(3) = 2.2e-164
 Identities = 228/436 (52%), Positives = 308/436 (70%)

Query:   275 GEATRQDNKAKIYYGMPREPDLQN--TIAVXXXXXXXXXXXXXXXXXXXXXXXSMFSKKT 332
             GEA RQDNK ++YYG+ +E D Q   T A                         + SKK+
Sbjct:   263 GEAKRQDNKMRVYYGLLKEVDFQTLTTPAPAPEEEDDDPDAPDRPKKKKPKKDPLLSKKS 322

Query:   333 KSDPNAPPVDRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTC 392
             KSDPNAP +DRIPLP LKDS+K+ KLKALREA+KR+ L  + LPS   YT+LN+ Q VTC
Sbjct:   323 KSDPNAPSIDRIPLPELKDSDKLLKLKALREASKRLALSKDQLPSAVFYTVLNSHQGVTC 382

Query:   393 AEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAET 452
             AEIS+D ++LA GF +S +++WSL P KL+ +K +D L++++ E  DI VR++D+R+ E 
Sbjct:   383 AEISDDSTMLACGFGDSSVRIWSLTPAKLRTLKDADSLRELDKESADINVRMLDDRSGEV 442

Query:   453 TRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP 512
             TR+L+GH GPV + +F+P+ +LLLSCS+D+TIRLWSLL W C+V Y+GH +PVWD++F+P
Sbjct:   443 TRSLMGHTGPVYRCAFAPEMNLLLSCSEDSTIRLWSLLTWSCVVTYRGHVYPVWDVRFAP 502

Query:   513 HGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWD 572
             HGYYF S  +D+ ARLWATDS   LR+FVGH SDVDCVQFHPNSNYVATGSSDRT+RLWD
Sbjct:   503 HGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNYVATGSSDRTVRLWD 562

Query:   573 CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVR 632
              +TG  VRL+TGHK  V +L+FS CGR+LAS   D N+ +WDLSN             V 
Sbjct:   563 NMTGQSVRLMTGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNGSLVTTLLRHTSTVT 622

Query:   633 ALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTK 692
              + FSRDG +LA++G D ++ LWDF K++++  +  + +SH  D +N    YL+R++ +K
Sbjct:   623 TITFSRDGTVLAAAGLDNNLTLWDFHKVTEDYISNHITVSHHQD-ENDEDVYLMRTFPSK 681

Query:   693 ASPLLHLIFSRRNILL 708
              SP + L F+RRN+L+
Sbjct:   682 NSPFVSLHFTRRNLLM 697

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0005669 "transcription factor TFIID complex" evidence=ISS;IDA;IPI

GO:0001075 "RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0000124 "SAGA complex" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|E1C4U3 E1C4U3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1502 (533.8 bits), Expect = 2.6e-160, Sum P(2) = 2.6e-160
 Identities = 287/606 (47%), Positives = 404/606 (66%)

Query:   121 GIDPNDSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYI 180
             G+  +  ++  +LSAY  +GDP LYE+ Y  LK FIE SLD ++ EL  + YP+ VHMY+
Sbjct:   170 GVVEDQPDVSAVLSAYNQQGDPTLYEEYYSGLKNFIECSLDCHRAELSQLFYPLFVHMYL 229

Query:   181 ELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRM 240
             ELVYN HE +A     +   D E +YQ+DLR LSS+TK++ ++ NE    FR+++F++R+
Sbjct:   230 ELVYNQHESEAKSFFERFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRI 289

Query:   241 SRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYEG-----------------EATRQDNK 283
             SRD+  LLKRHLQEK++  + NIVQEHLY D+++G                 EA R+ NK
Sbjct:   290 SRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANK 349

Query:   284 AKIYYGMPREPDLQNTIAVXXXXXXXXXXXXXXXXXXXXXXXSMFSKKTKSDPNAPPVDR 343
             AK+++G+ +EP+    +                         S+ SK  K DPNAPP +R
Sbjct:   350 AKVFFGLLKEPEFDVPL---DDEDEEGENEEGKPKKKKAKRDSVGSKSKKQDPNAPPQNR 406

Query:   344 IPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILA 403
             IPLP LKDS+K+DK+  ++EA +RV LGPE LPSI  YT LNA Q +T  +I++D S++ 
Sbjct:   407 IPLPELKDSDKLDKVMNMKEAARRVRLGPECLPSICFYTFLNAYQGLTAVDITDDSSMIV 466

Query:   404 VGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV 463
              GF++S +++WS+ P+KL+++K++  L  I+ E DD+L RIMDE+ A   + L GH GPV
Sbjct:   467 GGFADSTVRVWSVTPKKLRSVKAAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPV 526

Query:   464 RKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD 523
                SFSPDR+ LLSCS+D T+RLWSL  + CLV YKGH +PVWD +FSP+GYYF S GHD
Sbjct:   527 YGTSFSPDRNYLLSCSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHD 586

Query:   524 RMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT 583
             R+ARLWATD Y PLR+F GH +DV C +FHPNSNY+ATGS+DRT+RLWD + G+ VR+ T
Sbjct:   587 RVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYIATGSADRTVRLWDVLNGNCVRIFT 646

Query:   584 GHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNIL 643
             GHK P+++L+FS  GRFLA+   DG V +WD+ +           D + AL FSRDG IL
Sbjct:   647 GHKGPIHSLAFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTIYALRFSRDGEIL 706

Query:   644 ASSGQDCSVKLWDFAKLSDEVGTEEVNLSHS-ADIKNSSLAYLVRSYKTKASPLLHLIFS 702
             AS   D +V+LWD  K  +++ T++   +    ++  +S   L+ +Y TK++P++HL F+
Sbjct:   707 ASGSMDNTVRLWDAVKAFEDLETDDFTTATGHINLPENSQDLLLGTYMTKSTPVVHLHFT 766

Query:   703 RRNILL 708
             RRN+LL
Sbjct:   767 RRNLLL 772

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|E1BEN8 TAF5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1495 (531.3 bits), Expect = 2.9e-159, Sum P(2) = 2.9e-159
 Identities = 286/610 (46%), Positives = 409/610 (67%)

Query:   117 VNDLGIDPNDSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLV 176
             V  + ++ +  ++  +LSAY  +GDP +YE+ Y  LK FIE SLD ++ EL  + YP+ V
Sbjct:   187 VGSVSVE-DQPDVSAVLSAYSQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFV 245

Query:   177 HMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEF 236
             HMY+ELVYN HE++A     K   D E +YQ+DLR LSS+TK++ ++ NE    FR+++F
Sbjct:   246 HMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKF 305

Query:   237 IIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYEG-----------------EATR 279
             ++R+SRD+  LLKRHLQEK++  + NIVQEHLY D+++G                 EA R
Sbjct:   306 VLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKR 365

Query:   280 QDNKAKIYYGMPREPDLQNTIAVXXXXXXXXXXXXXXXXXXXXXXXSMFSKKTKSDPNAP 339
             + NK+K+++G+ +EP+++  +                         S+ SK  K DPNAP
Sbjct:   366 EANKSKVFFGLLKEPEIEVPL---DDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPNAP 422

Query:   340 PVDRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDV 399
             P +RIPLP LKDS+K+DK+  ++E TKRV LGP+ LPSI  YT LNA Q +T  ++++D 
Sbjct:   423 PQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDS 482

Query:   400 SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH 459
             S++A GF++S +++WS+ P+KL+++K +  L  I+ E DD+L RIMDE+ A   + L GH
Sbjct:   483 SLIAGGFADSTVRVWSVTPKKLRSVKQAADLSLIDKESDDVLERIMDEKTASELKILYGH 542

Query:   460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFAS 519
              GPV   SFSPDR+ LLS S+D T+RLWSL  + CLV YKGH +PVWD +FSP+GYYF S
Sbjct:   543 SGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVS 602

Query:   520 AGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV 579
              GHDR+ARLWATD Y PLR+F GH +DV+C +FHPNSNYVATGS+DRT+RLWD + G+ V
Sbjct:   603 GGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCV 662

Query:   580 RLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRD 639
             R+ TGHK P+++L+FS  GRFLA+   DG V +WD+ +           D V +L FSRD
Sbjct:   663 RIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRD 722

Query:   640 GNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHS-ADIKNSSLAYLVRSYKTKASPLLH 698
             G ILAS   D +V+LWD  K  ++V T++   +    ++  +S   L+ +Y TK++P++H
Sbjct:   723 GEILASGSMDNTVRLWDAVKAFEDVETDDFTTATGHINLPENSQELLLGTYMTKSTPVVH 782

Query:   699 LIFSRRNILL 708
             L F+RRN++L
Sbjct:   783 LHFTRRNLVL 792

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|E2RE41 TAF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1492 (530.3 bits), Expect = 2.9e-159, Sum P(2) = 2.9e-159
 Identities = 285/610 (46%), Positives = 409/610 (67%)

Query:   117 VNDLGIDPNDSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLV 176
             V  + ++ +  ++  +LSAY  +GDP +YE+ Y  LK FIE SLD ++ EL  + YP+ V
Sbjct:   188 VGSVAVE-DQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFV 246

Query:   177 HMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEF 236
             HMY+ELVYN HE++A     K   D E +YQ+DLR LSS+TK++ ++ NE    FR+++F
Sbjct:   247 HMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKF 306

Query:   237 IIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYEG-----------------EATR 279
             ++R+SRD+  LLKRHLQEK++  + NIVQEHLY D+++G                 EA R
Sbjct:   307 VLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKR 366

Query:   280 QDNKAKIYYGMPREPDLQNTIAVXXXXXXXXXXXXXXXXXXXXXXXSMFSKKTKSDPNAP 339
             + NK+K+++G+ +EP+++  +                         S+ SK  K DPNAP
Sbjct:   367 EANKSKVFFGLLKEPEIEVPL---DDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPNAP 423

Query:   340 PVDRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDV 399
             P +RIPLP LKDS+K+DK+  ++E TKRV LGP+ LPSI  YT LNA Q +T  ++++D 
Sbjct:   424 PQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDS 483

Query:   400 SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH 459
             S++A GF++S +++WS+ P+KL+++K +  L  I+ E DD+L RIMDE+ A   + L GH
Sbjct:   484 SLIAGGFADSTVRVWSVTPKKLRSVKQAADLSLIDKESDDVLERIMDEKTASELKILYGH 543

Query:   460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFAS 519
              GPV   SFSPDR+ LLS S+D T+RLWSL  + CLV YKGH +PVWD +FSP+GYYF S
Sbjct:   544 SGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVS 603

Query:   520 AGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV 579
              GHDR+ARLWATD Y PLR+F GH +DV+C +FHPNSNYVATGS+DRT+RLWD + G+ V
Sbjct:   604 GGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCV 663

Query:   580 RLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRD 639
             R+ TGHK P+++L+FS  GRFLA+   DG V +WD+ +           D V +L FSRD
Sbjct:   664 RIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRD 723

Query:   640 GNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHS-ADIKNSSLAYLVRSYKTKASPLLH 698
             G ILAS   D +V+LWD  K  +++ T++   +    ++  +S   L+ +Y TK++P++H
Sbjct:   724 GEILASGSMDNTVRLWDAVKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVH 783

Query:   699 LIFSRRNILL 708
             L F+RRN++L
Sbjct:   784 LHFTRRNLVL 793

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

RGD|1311332 Taf5 "TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Rattus norvegicus (taxid:10116)]

 Score = 1490 (529.6 bits), Expect = 6.0e-159, Sum P(2) = 6.0e-159
 Identities = 284/599 (47%), Positives = 403/599 (67%)

Query:   128 EIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGH 187
             ++  +LSAY  +GDP +YE+ Y  LK FIE SLD ++ EL  + YP+ VHMY+ELVYN H
Sbjct:   195 DVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQH 254

Query:   188 EHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSL 247
             E +A     K   D E +YQ+DLR LSS+TK++ ++ NE    FR+++F++R+SRD+  L
Sbjct:   255 ESEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQL 314

Query:   248 LKRHLQEKKHTVLLNIVQEHLYFDMYEG-----------------EATRQDNKAKIYYGM 290
             LKRHLQEK++  + NIVQEHLY D+++G                 EA R+ NK+K+++G+
Sbjct:   315 LKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGL 374

Query:   291 PREPDLQNTIAVXXXXXXXXXXXXXXXXXXXXXXXSMFSKKTKSDPNAPPVDRIPLPPLK 350
              +EP+++  +                         S+ SK  K DPNAPP +RIPLP LK
Sbjct:   375 LKEPEIEVPL---DDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELK 431

Query:   351 DSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESY 410
             DS+K+DK+  ++E TKRV LGP+ LPSI  YT LNA Q +T  ++++D S++A GF++S 
Sbjct:   432 DSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADST 491

Query:   411 IKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSP 470
             +++WS+ P+KL+++K +  L  I+ E DD+L RIMDE+ A   + L GH GPV   SFSP
Sbjct:   492 VRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSP 551

Query:   471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA 530
             DR+ LLS S+D T+RLWSL  + CLV YKGH +PVWD +FSP+GYYF S GHDR+ARLWA
Sbjct:   552 DRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWA 611

Query:   531 TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVY 590
             TD Y PLR+F GH +DV+C +FHPNSNYVATGS+DRT+RLWD + G+ VR+ TGHK P++
Sbjct:   612 TDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIH 671

Query:   591 ALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDC 650
             +L+FS  GRFLA+   DG V +WD+ +           D V +L FSRDG ILAS   D 
Sbjct:   672 SLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDN 731

Query:   651 SVKLWDFAKLSDEVGTEEVNLSHS-ADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILL 708
             +V+LWD  K  +++ T++   +    ++  +S   L+ +Y TK++P++HL F+RRN++L
Sbjct:   732 TVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVL 790

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0004402 "histone acetyltransferase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005669 "transcription factor TFIID complex" evidence=IEA;ISO

GO:0006352 "DNA-dependent transcription, initiation" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0015629 "actin cytoskeleton" evidence=IEA;ISO

GO:0016573 "histone acetylation" evidence=ISO

GO:0033276 "transcription factor TFTC complex" evidence=IEA;ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0046983 "protein dimerization activity" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q15542 TAF5 "Transcription initiation factor TFIID subunit 5" [Homo sapiens (taxid:9606)]

 Score = 1493 (530.6 bits), Expect = 1.6e-158, Sum P(2) = 1.6e-158
 Identities = 285/610 (46%), Positives = 409/610 (67%)

Query:   117 VNDLGIDPNDSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLV 176
             V  + ++ +  ++  +LSAY  +GDP +YE+ Y  LK FIE SLD ++ EL  + YP+ V
Sbjct:   187 VGSVAVE-DQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFV 245

Query:   177 HMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEF 236
             HMY+ELVYN HE++A     K   D E +YQ+DLR LSS+TK++ ++ NE    FR+++F
Sbjct:   246 HMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKF 305

Query:   237 IIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYEG-----------------EATR 279
             ++R+SRD+  LLKRHLQEK++  + NIVQEHLY D+++G                 EA R
Sbjct:   306 VLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKR 365

Query:   280 QDNKAKIYYGMPREPDLQNTIAVXXXXXXXXXXXXXXXXXXXXXXXSMFSKKTKSDPNAP 339
             + NK+K+++G+ +EP+++  +                         S+ SK  K DPNAP
Sbjct:   366 EANKSKVFFGLLKEPEIEVPL---DDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPNAP 422

Query:   340 PVDRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDV 399
             P +RIPLP LKDS+K+DK+  ++E TKRV LGP+ LPSI  YT LNA Q +T  ++++D 
Sbjct:   423 PQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDS 482

Query:   400 SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH 459
             S++A GF++S +++WS+ P+KL+++K +  L  I+ E DD+L RIMDE+ A   + L GH
Sbjct:   483 SLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGH 542

Query:   460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFAS 519
              GPV   SFSPDR+ LLS S+D T+RLWSL  + CLV YKGH +PVWD +FSP+GYYF S
Sbjct:   543 SGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVS 602

Query:   520 AGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV 579
              GHDR+ARLWATD Y PLR+F GH +DV+C +FHPNSNYVATGS+DRT+RLWD + G+ V
Sbjct:   603 GGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCV 662

Query:   580 RLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRD 639
             R+ TGHK P+++L+FS  GRFLA+   DG V +WD+ +           D V +L FSRD
Sbjct:   663 RIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRD 722

Query:   640 GNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHS-ADIKNSSLAYLVRSYKTKASPLLH 698
             G ILAS   D +V+LWD  K  +++ T++   +    ++  +S   L+ +Y TK++P++H
Sbjct:   723 GEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVH 782

Query:   699 LIFSRRNILL 708
             L F+RRN++L
Sbjct:   783 LHFTRRNLVL 792

GO:0019048 "virus-host interaction" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IDA;TAS

GO:0005669 "transcription factor TFIID complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0046983 "protein dimerization activity" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0033276 "transcription factor TFTC complex" evidence=IDA

GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA

GO:0016568 "chromatin modification" evidence=IC

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

MGI|MGI:2442144 Taf5 "TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Mus musculus (taxid:10090)]

 Score = 1484 (527.5 bits), Expect = 2.6e-158, Sum P(2) = 2.6e-158
 Identities = 282/599 (47%), Positives = 403/599 (67%)

Query:   128 EIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGH 187
             ++  +LSAY  +GDP +YE+ Y  LK FIE SLD ++ EL  + YP+ VHMY+ELVYN H
Sbjct:   198 DVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQH 257

Query:   188 EHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSL 247
             E++A     K   D E +YQ+DLR LSS+TK++ ++ NE    FR+++F++R+ RD+  L
Sbjct:   258 ENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRIYRDSYQL 317

Query:   248 LKRHLQEKKHTVLLNIVQEHLYFDMYEG-----------------EATRQDNKAKIYYGM 290
             LKRHLQEK++  + NIVQEHLY D+++G                 EA R+ NK+K+++G+
Sbjct:   318 LKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGL 377

Query:   291 PREPDLQNTIAVXXXXXXXXXXXXXXXXXXXXXXXSMFSKKTKSDPNAPPVDRIPLPPLK 350
              +EP+++  +                         S+ SK  K DPNAPP +RIPLP LK
Sbjct:   378 LKEPEIEVPL---DDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELK 434

Query:   351 DSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESY 410
             DS+K+DK+  ++E TKRV LGP+ LPSI  YT LNA Q +T  ++++D S++A GF++S 
Sbjct:   435 DSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADST 494

Query:   411 IKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSP 470
             +++WS+ P+KL+++K +  L  I+ E DD+L RIMDE+ A   + L GH GPV   SFSP
Sbjct:   495 VRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSP 554

Query:   471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA 530
             DR+ LLS S+D T+RLWSL  + CLV YKGH +PVWD +FSP+GYYF S GHDR+ARLWA
Sbjct:   555 DRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWA 614

Query:   531 TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVY 590
             TD Y PLR+F GH +DV+C ++HPNSNYVATGS+DRT+RLWD + G+ VR+ TGHK P++
Sbjct:   615 TDHYQPLRIFAGHLADVNCTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIH 674

Query:   591 ALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDC 650
             +L+FS  GRFLA+   DG V +WD+ +           D V +L FSRDG ILAS   D 
Sbjct:   675 SLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDN 734

Query:   651 SVKLWDFAKLSDEVGTEEVNLSHS-ADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILL 708
             +V+LWD  K  +++ T++   +    ++  +S   L+ +Y TK++P++HL F+RRN++L
Sbjct:   735 TVRLWDAVKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVL 793

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005669 "transcription factor TFIID complex" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006352 "DNA-dependent transcription, initiation" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISO

GO:0016573 "histone acetylation" evidence=ISO

GO:0033276 "transcription factor TFTC complex" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0046983 "protein dimerization activity" evidence=ISO

ZFIN|ZDB-GENE-051120-180 taf5 "TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)]

 Score = 1467 (521.5 bits), Expect = 2.4e-153, Sum P(2) = 2.4e-153
 Identities = 281/599 (46%), Positives = 399/599 (66%)

Query:   128 EIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGH 187
             ++  +LSAY  +GDP+LY+  Y DLKKFIE+ LD ++ EL  + YP+ VHMY+ELVYN H
Sbjct:   153 DVSVVLSAYSQQGDPSLYKVYYSDLKKFIESVLDCHRAELSQLFYPLFVHMYLELVYNNH 212

Query:   188 EHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSL 247
             E +A     K   D E +Y++DLR L  +TK++ ++ NE    FR++ F++R+SRD+  L
Sbjct:   213 ESEAKAFFDKFSGDQECYYEDDLRVLCGLTKKEHMKGNEALLDFRTSRFVLRISRDSYQL 272

Query:   248 LKRHLQEKKHTVLLNIVQEHLYFDMYEG-----------------EATRQDNKAKIYYGM 290
             LKRHLQE+++  + NI+QEHLY D+++G                 EA R+ NK K++YG+
Sbjct:   273 LKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSMSGSLAGEARREVNKVKVFYGL 332

Query:   291 PREPDLQNTIAVXXXXXXXXXXXXXXXXXXXXXXXSMFSKKTKSDPNAPPVDRIPLPPLK 350
              +EP+++  +                         SM SK  K DPNAP  +RIPLP LK
Sbjct:   333 LKEPEIEVPL---DDEDEEAENEEGKPKKKKTKKDSMGSKSKKQDPNAPQQNRIPLPELK 389

Query:   351 DSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESY 410
             DS+K+DK+  ++E+TKR+ LGPE+LPSI  YT LNA Q +T  + ++D S++A GF++S 
Sbjct:   390 DSDKLDKIMYMKESTKRIRLGPETLPSICFYTFLNAYQGLTAVDFTDDSSLIAGGFADST 449

Query:   411 IKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSP 470
             +++WS+ P+KL+ +KS+  L  I+ E DD+L RIMDE+ +  ++ L GH GPV  +SFSP
Sbjct:   450 VRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDEKTSSESKILHGHSGPVYGVSFSP 509

Query:   471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA 530
             DR+ LLS S+D TIRLWSL  + CLV YKGH +PVWD +FSP GYYF S GHDR+ARLWA
Sbjct:   510 DRNYLLSSSEDGTIRLWSLQTFTCLVGYKGHNYPVWDTQFSPFGYYFVSGGHDRVARLWA 569

Query:   531 TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVY 590
             TD Y PLR+F GH +DV C +FHPNSNYVATGSSDRT+RLWD + G+ VR+ TGHK P++
Sbjct:   570 TDHYQPLRIFAGHLADVTCTRFHPNSNYVATGSSDRTVRLWDVLNGNCVRIFTGHKGPIH 629

Query:   591 ALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDC 650
             +L+FS  G+FLAS   DG V +WD+ +             + AL FSRDG I+AS   D 
Sbjct:   630 SLAFSPNGKFLASGSTDGRVLLWDIGHGLMIAELKGHTGTIYALKFSRDGEIIASGSIDN 689

Query:   651 SVKLWDFAKLSDEVGTEEVNLSHS-ADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILL 708
             +V+LWD  +  D+V T++   +     + ++S   L+ +Y +K++ ++HL F+RRN+LL
Sbjct:   690 TVRLWDVMRAIDDVETDDFTAATGHIHLPDNSQELLLGTYHSKSTAVIHLHFTRRNLLL 748

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1S845 TAF5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1073 (382.8 bits), Expect = 1.7e-139, Sum P(2) = 1.7e-139
 Identities = 201/384 (52%), Positives = 273/384 (71%)

Query:   326 SMFSKKTKSDPNAPPVDRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLN 385
             +M SK  K DPNAPP +RIPLP LKDS+K+DK+  ++E TKRV LGP+ LPSI  YT LN
Sbjct:   168 AMGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLN 227

Query:   386 ARQQ-VTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRI 444
             A QQ +T  ++++D S++A GF++S +++WS+ P+KL+++K +  L  I+ E DD+L RI
Sbjct:   228 AYQQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQAADLSLIDKESDDVLERI 287

Query:   445 MDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP 504
             MDE+ A   + L GH GPV   SFSPDR+ LLS S+D T+RLWSL  + CLV YKGH +P
Sbjct:   288 MDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYP 347

Query:   505 VWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS 564
             VWD +FSP+GYYF S GHDR+ARLWATD Y PLR+F GH +DV+C +FHPNSNYVATGS+
Sbjct:   348 VWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSA 407

Query:   565 DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXX 624
             DRT+RLWD + G+ VR+ TGHK P+++L+FS  GRFLA+   DG V +WD+ +       
Sbjct:   408 DRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGEL 467

Query:   625 XXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAY 684
                 D V +L FSRDG ILAS   D +V+LWD  K  +++ T+            +S   
Sbjct:   468 KGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAVKAFEDLETD------------NSQEL 515

Query:   685 LVRSYKTKASPLLHLIFSRRNILL 708
             L+ +Y TK++P++HL F+RRN++L
Sbjct:   516 LLGTYMTKSTPVVHLHFTRRNLVL 539

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

DICTYBASE|DDB_G0287337 taf5 "TFIID subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 655 (235.6 bits), Expect = 9.5e-106, Sum P(4) = 9.5e-106
 Identities = 127/273 (46%), Positives = 172/273 (63%)

Query:   443 RIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHG 502
             ++  ++     +T +GH GPV   SFSPD   LLSCS+D T RLWS+     LV YKGH 
Sbjct:   662 KLQKQQKESEFKTFLGHSGPVYGCSFSPDSQYLLSCSEDTTARLWSMETMSNLVCYKGHN 721

Query:   503 HPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATG 562
              PVWD+ FSP G+YFA+A HDR ARLW T+   PLR+F GH SD + V+FHPN NY+ATG
Sbjct:   722 FPVWDVSFSPFGFYFATASHDRTARLWTTNHISPLRIFTGHLSDCNTVRFHPNINYLATG 781

Query:   563 SSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXX 622
             S+D++ RLW+  TG  VR+  GH+AP+Y ++FS  GR LA+AG D +V +WDLS      
Sbjct:   782 SNDKSARLWEIQTGKCVRIFMGHRAPIYTVAFSPDGRLLATAGEDTSVILWDLSTGKKVK 841

Query:   623 XXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAK-LSDEVGTEEVNLSHSADIKNSS 681
                     V +L FS DG+ILAS   DC+V+LWD  K  +  + T+  +L +    K  +
Sbjct:   842 KMDGHTKCVYSLDFSCDGSILASGSSDCTVRLWDVKKAFNSSLSTQPSSLINDESRKRKT 901

Query:   682 LAY------LVRSYKTKASPLLHLIFSRRNILL 708
             L        L+ +Y TK +P+ ++ FSRRN+LL
Sbjct:   902 LKSKLFSDELLETYPTKQTPVYNVCFSRRNLLL 934

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016568 "chromatin modification" evidence=ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0005669 "transcription factor TFIID complex" evidence=ISS

GO:0000124 "SAGA complex" evidence=ISS

GO:0006413 "translational initiation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49846	TAF5_DROME	No assigned EC number	0.4677	0.8537	0.8622	yes	N/A
Q8C092	TAF5_MOUSE	No assigned EC number	0.4974	0.8129	0.7215	yes	N/A
Q8SQS4	TAF5_ENCCU	No assigned EC number	0.3442	0.7341	0.9388	yes	N/A
Q15542	TAF5_HUMAN	No assigned EC number	0.5008	0.8129	0.7225	yes	N/A
O13282	TAF5_SCHPO	No assigned EC number	0.3457	0.7623	0.8429	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	711
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-73
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-68
cd08044	133	cd08044, TAF5_NTD2, TAF5_NTD2 is the second conser	9e-49
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-48
pfam04494	141	pfam04494, TFIID_90kDa, WD40 associated region in	1e-45
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-42
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-41
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-38
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-35
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-21
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-10
smart00320	40	smart00320, WD40, WD40 repeats	6e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-09
smart00320	40	smart00320, WD40, WD40 repeats	2e-09
smart00320	40	smart00320, WD40, WD40 repeats	2e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-09
smart00320	40	smart00320, WD40, WD40 repeats	6e-09
smart00320	40	smart00320, WD40, WD40 repeats	1e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-08
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	5e-08
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	3e-07
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	3e-06
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	5e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	9e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	1e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-05
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	4e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	6e-04
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	6e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	8e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	8e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	0.001
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	0.002
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.003
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.004
pfam08662	194	pfam08662, eIF2A, Eukaryotic translation initiatio	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  239 bits (612), Expect = 1e-73
 Identities = 98/286 (34%), Positives = 143/286 (50%), Gaps = 11/286 (3%)

Query: 382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLK--------AMKSSDQLQDI 433
           TL      VTC   S D  +LA G  +  IK+W L   +L          ++      D 
Sbjct: 4   TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63

Query: 434 EMEC---DDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL 490
                   D  +R+ D    E  RTL GH   V  ++FSPD  +L S S+D TI++W + 
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123

Query: 491 LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCV 550
             +CL   +GH   V  + FSP G + AS+  D   +LW   +   +    GH  +V+ V
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183

Query: 551 QFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNV 610
            F P+   + + SSD TI+LWD  TG  +  L GH+  V +++FS  G  LAS   DG +
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243

Query: 611 HMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD 656
            +WDL  G  +  L+GHT+ V +L +S DG  LAS   D ++++WD
Sbjct: 244 RVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  225 bits (576), Expect = 2e-68
 Identities = 85/207 (41%), Positives = 116/207 (56%)

Query: 453 TRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP 512
            RTL GH G V  ++FSPD  LL + S D TI++W L     L   KGH  PV D+  S 
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61

Query: 513 HGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWD 572
            G Y AS   D+  RLW  ++   +R   GH S V  V F P+   +++ S D+TI++WD
Sbjct: 62  DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121

Query: 573 CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVR 632
             TG  +  L GH   V +++FS  G F+AS+  DG + +WDL  G  +  LTGHT  V 
Sbjct: 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181

Query: 633 ALCFSRDGNILASSGQDCSVKLWDFAK 659
           ++ FS DG  L SS  D ++KLWD + 
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLST 208

Length = 289

>gnl|CDD|176269 cd08044, TAF5_NTD2, TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

 Score =  167 bits (425), Expect = 9e-49
 Identities = 61/133 (45%), Positives = 91/133 (68%)

Query: 142 PNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMD 201
           PN YE AY  L+K+IE+SLD+YKYEL  +LYP+ VH Y++LV +GH  +A     +   D
Sbjct: 1   PNDYEQAYSKLRKWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGD 60

Query: 202 HEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLL 261
            E  + ED++KLSS+T  + ++ NE+A+ FRS +++IRMSRD  SLL R L+    ++LL
Sbjct: 61  FEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLLRFLESWGGSLLL 120

Query: 262 NIVQEHLYFDMYE 274
            I+ EH+  D+ +
Sbjct: 121 KILNEHIDIDVRD 133

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. TAF5 has a paralog gene (TAF5L) which has a redundant function. Several hypotheses are proposed for TAFs functions such as serving as activator-binding sites, core-promoter recognition or a role in essential catalytic activity. C-terminus of TAF5 contains six WD40 repeats that likely form a closed beta propeller structure and may be involved in protein-protein interaction. The first part of the TAF5 N-terminal (TAF5_NTD1) homodimerizes in the absence of other TAFs. The second conserved N-terminal part of TAF5 (TAF5_NTD2) has an alpha-helical domain. One study has shown that TAF5_NTD2 homodimerizes only at high concentration of calcium but not any other metals. No dimerization was observed in other structural studies of TAF_NTD2. Several TAFs interact via histone-fold (HFD) motifs; HFD is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamer. However, TAF5 does not have a HFD motif. Length = 133

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  170 bits (433), Expect = 5e-48
 Identities = 69/168 (41%), Positives = 93/168 (55%)

Query: 494 CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFH 553
                KGH   V  + FSP G   A+   D   ++W  ++   LR   GH   V  V   
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 554 PNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW 613
            +  Y+A+GSSD+TIRLWD  TG  VR LTGH + V +++FS  GR L+S+  D  + +W
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 614 DLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS 661
           D+  G  LT L GHTD V ++ FS DG  +ASS QD ++KLWD     
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168

Length = 289

>gnl|CDD|203028 pfam04494, TFIID_90kDa, WD40 associated region in TFIID subunit

 Score =  158 bits (402), Expect = 1e-45
 Identities = 62/141 (43%), Positives = 88/141 (62%), Gaps = 3/141 (2%)

Query: 132 LLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQA 191
           +LSA   E DP  YE AY  L+ +IE+SLD+YK EL  +LYP+ VH Y++LV  GH  +A
Sbjct: 1   VLSASPEESDPEQYERAYSLLRNWIEDSLDIYKPELSRLLYPLFVHSYLDLVAKGHPSEA 60

Query: 192 TEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRH 251
                K   D E  + ED+ KL S++  + ++ NE+A  FR  ++ IR+SRD+ SLL R 
Sbjct: 61  RSFFDKFHGDFEQLHGEDIEKLRSISLPEHLKENELARAFRDNKYRIRLSRDSFSLLLRF 120

Query: 252 LQEKKHTV---LLNIVQEHLY 269
           LQE ++T    LL I+ +HL 
Sbjct: 121 LQENENTGGSLLLRILNQHLQ 141

This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown. Length = 141

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  159 bits (402), Expect = 4e-42
 Identities = 111/331 (33%), Positives = 150/331 (45%), Gaps = 23/331 (6%)

Query: 374 SLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLK----AMKSSDQ 429
           SLP ++   L      +T    S D  +L  G S+  IKLW L   +             
Sbjct: 52  SLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSS 111

Query: 430 LQDIE------------MECDDILVRIMD-ERNAETTRTLVGHEGPVRKLSFSPDRSLLL 476
           +  +                 D  V++ D     +  RTL GH   V  L+FSPD  LL 
Sbjct: 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLA 171

Query: 477 SCSQ-DNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSY 534
           S S  D TI+LW L   + L    GH  PV  + FSP G    AS   D   RLW   + 
Sbjct: 172 SGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231

Query: 535 HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG-SHVRLLTGHKAPVYALS 593
             LR  +  +SD     F P+ + +A+GSSD TIRLWD  +  S +R L+GH + V +++
Sbjct: 232 KLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVA 291

Query: 594 FSVCGRFLASAGGDGNVHMWDLSNGHLLTLLT--GHTDVVRALCFSRDGNILASSG-QDC 650
           FS  G+ LAS   DG V +WDL  G LL+ LT  GH   V +L FS DG++L S G  D 
Sbjct: 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351

Query: 651 SVKLWDFAKLSDEVGTEEVNLSHSADIKNSS 681
           +++LWD          E  +   S       
Sbjct: 352 TIRLWDLRTGKPLKTLEGHSNVLSVSFSPDG 382

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  156 bits (395), Expect = 3e-41
 Identities = 113/311 (36%), Positives = 144/311 (46%), Gaps = 23/311 (7%)

Query: 390 VTCAEISEDVSILAVG-FSESYIKLWSLVPQKLKA--MKSSDQLQDIEMECD-------- 438
           VT    S D  +LA G   +  IKLW L   K  +     +D +  +    D        
Sbjct: 158 VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217

Query: 439 --DILVRIMDERNAETTR-TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL-LWRC 494
             D  +R+ D    +  R TL GH   V   SFSPD SLL S S D TIRLW L      
Sbjct: 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL 276

Query: 495 LVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY--HPLRLFVGHYSDVDCVQF 552
           L    GH   V  + FSP G   AS   D   RLW  ++          GH   V  + F
Sbjct: 277 LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF 336

Query: 553 HPNSNYVATG-SSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVH 611
            P+ + + +G S D TIRLWD  TG  ++ L GH   V ++SFS  GR ++S   DG V 
Sbjct: 337 SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVR 395

Query: 612 MWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEV---GTEE 668
           +WDLS G LL  L GHT  V +L FS DG  LAS   D +++LWD       V      +
Sbjct: 396 LWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGK 455

Query: 669 VNLSHSADIKN 679
           V  S S+D+  
Sbjct: 456 VLASKSSDLSV 466

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  144 bits (365), Expect = 1e-38
 Identities = 60/193 (31%), Positives = 83/193 (43%), Gaps = 31/193 (16%)

Query: 380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDD 439
             TL      V     S D + +A    +  IKLW L                       
Sbjct: 128 LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL----------------------- 164

Query: 440 ILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK 499
                   R  +   TL GH G V  ++FSPD   LLS S D TI+LW L   +CL   +
Sbjct: 165 --------RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216

Query: 500 GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYV 559
           GH + V  + FSP GY  AS   D   R+W   +   ++   GH + V  + + P+   +
Sbjct: 217 GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRL 276

Query: 560 ATGSSDRTIRLWD 572
           A+GS+D TIR+WD
Sbjct: 277 ASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  140 bits (352), Expect = 2e-35
 Identities = 91/286 (31%), Positives = 133/286 (46%), Gaps = 13/286 (4%)

Query: 406 FSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRK 465
                +K   L P        S    +  +    +L   +      ++  L GHE  +  
Sbjct: 11  NKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITS 70

Query: 466 LSFSPDRSLLLSCSQDNTIRLWSLLL-WRCLVVYKG-HGHPVWDIKF-SPHGYYFASAG- 521
           ++FSPD  LLLS S D TI+LW L    + +   +G H   V  +   SP G     A  
Sbjct: 71  IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS 130

Query: 522 -HDRMARLWA-TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS-DRTIRLWDCVTGSH 578
             D   +LW  +     +R   GH   V  + F P+   +A+GSS D TI+LWD  TG  
Sbjct: 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190

Query: 579 VRLLTGHKAPVYALSFSVCGRF-LASAGGDGNVHMWDLSNGHLL-TLLTGHTDVVRALCF 636
           +  L GH  PV +L+FS  G   +AS   DG + +WDLS G LL + L+GH+D V    F
Sbjct: 191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSF 249

Query: 637 SRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSL 682
           S DG++LAS   D +++LWD    S  +        HS+ + + + 
Sbjct: 250 SPDGSLLASGSSDGTIRLWDLRSSSSLL---RTLSGHSSSVLSVAF 292

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 97.1 bits (240), Expect = 3e-21
 Identities = 78/231 (33%), Positives = 98/231 (42%), Gaps = 43/231 (18%)

Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDI 440
            TL      V     S D  +LA G S+  ++LW L                        
Sbjct: 278 RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL------------------------ 313

Query: 441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSLLLWRCLVVYK 499
                +     ++ TL GHEGPV  LSFSPD S L+   S D TIRLW L   + L   +
Sbjct: 314 -----ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368

Query: 500 GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYV 559
           GH   V  + FSP G   +S   D   RLW   +   LR   GH S V  + F P+   +
Sbjct: 369 GH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSL 427

Query: 560 ATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNV 610
           A+GSSD TIRLWD  T                +SFS  G+ LAS   D +V
Sbjct: 428 ASGSSDNTIRLWDLKTSLKS------------VSFSPDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 536 PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWD 572
            LR   GH   V  V F P+ N +A+GS D T+R+WD
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 533 SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWD 572
           S   L+   GH   V  V F P+  Y+A+GS D TI+LWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 451 ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWS 488
           +  RTL GH GPV  ++FSPD +LL S S D T+R+W 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query: 618 GHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD 656
           G LL  L GHT  V ++ FS DGN+LAS   D +V++WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query: 617 NGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD 656
           +G LL  L GHT  V ++ FS DG  LAS   D ++KLWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWS 488
           +TL GH GPV  ++FSPD   L S S D TI+LW 
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 15/38 (39%), Positives = 18/38 (47%)

Query: 492 WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLW 529
            + L   KGH  PV  + FSP G   AS   D   R+W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 51.5 bits (124), Expect = 6e-09
 Identities = 16/38 (42%), Positives = 18/38 (47%)

Query: 492 WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLW 529
              L   KGH  PV  + FSP G Y AS   D   +LW
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD 614
           +G  ++ L GH  PV +++FS  G++LAS   DG + +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 576 GSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD 614
           G  +R L GH  PV +++FS  G  LAS   DG V +WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 55.7 bits (134), Expect = 5e-08
 Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 42/229 (18%)

Query: 456 LVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           L+G EGP+  ++F+P D   L + S+D TI  W +              P   +      
Sbjct: 71  LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGI--------------PEEGLT----- 111

Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYV-ATGSSDRTIRLWDC 573
                            +   P+    GH   V  V FHP++  V A+  +D  + +WD 
Sbjct: 112 ----------------QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDV 155

Query: 574 VTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGH--TDVV 631
             G  V ++  H   + +L +++ G  L +   D  +++ D  +G +++ +  H      
Sbjct: 156 ERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQ 215

Query: 632 RALCFSRDGNILA---SSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADI 677
           R L   R   I+    S  Q   + LWD  K++    T +++ S +  I
Sbjct: 216 RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFI 264

Length = 493

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 1   MDQLPSLMDDPPQESFHSVPII--QQTLSPQQP--PVSPQHQNMMSPIQQH--SLSPHTQ 54
             Q P      P    H +P++  QQ + PQQP  PV  QH   M+P Q H  +L    Q
Sbjct: 43  SQQHPPTHTLQPH---HHIPVLPAQQPVVPQQPLMPVPGQHS--MTPTQHHQPNLPQPAQ 97

Query: 55  APSPQPPAQPQQVPSPYHTPPP 76
            P    P QP Q   P    PP
Sbjct: 98  QPFQPQPLQPPQPQQPMQPQPP 119

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 11/128 (8%)

Query: 539 LFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCV-------TGSHVRLLTGHKAPVY 590
           + +G    +  V F+P +   + T S D TI  W              +  L GH   V 
Sbjct: 70  ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG 129

Query: 591 ALSF--SVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ 648
            +SF  S     LASAG D  V++WD+  G  + ++  H+D + +L ++ DG++L ++ +
Sbjct: 130 IVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK 188

Query: 649 DCSVKLWD 656
           D  + + D
Sbjct: 189 DKKLNIID 196

Length = 493

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.2 bits (120), Expect = 3e-06
 Identities = 43/223 (19%), Positives = 65/223 (29%), Gaps = 31/223 (13%)

Query: 1   MDQLPSLMDD--PPQE-SFHSVPIIQQTLSPQQPPVSP---QHQNMMSPIQQHSLSPHTQ 54
           + QL    DD    +    H  P+  Q  +  QP  +       +  S   Q S      
Sbjct: 359 LAQLTQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSAT 418

Query: 55  APSPQPPAQPQQVPSPYHTPPPSQTSKQSGKAPDKNT------LITMLKLLRQYNLRGTE 108
            P+  PP      P+     PPS   +    A  K         ++ L       ++   
Sbjct: 419 QPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKA 478

Query: 109 EQLKKEINVNDLGIDPNDSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELG 168
           EQ    I     G      EI         E D   Y   +   +   E +L   K  + 
Sbjct: 479 EQATGNIKEAPTGTQK---EIFT-------EEDLQYYWQEFAGTRPQEEKAL---KETMI 525

Query: 169 LVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLR 211
                +L     E+  + +E Q      K L +  P     LR
Sbjct: 526 NCRPKLLNGTTFEVAVD-NELQE-----KELTNLIPDLLGFLR 562

Length = 614

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 49.2 bits (117), Expect = 5e-06
 Identities = 23/87 (26%), Positives = 27/87 (31%), Gaps = 7/87 (8%)

Query: 1   MDQLPSLMDDPPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPSPQP 60
             Q P     P Q     V  + Q  +PQQ P  P       P       P  Q  + QP
Sbjct: 89  QSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPP-------PAQQPQAQQP 141

Query: 61  PAQPQQVPSPYHTPPPSQTSKQSGKAP 87
              PQ      +  PP Q   Q    P
Sbjct: 142 QPPPQVPQQQQYQSPPQQPQYQQNPPP 168

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 48.6 bits (116), Expect = 9e-06
 Identities = 25/79 (31%), Positives = 27/79 (34%)

Query: 1   MDQLPSLMDDPPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPSPQP 60
             Q P    +  Q         Q    P  PP  PQ    +   Q   LS     P PQP
Sbjct: 203 YPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQP 262

Query: 61  PAQPQQVPSPYHTPPPSQT 79
           P Q QQ P P   PPP   
Sbjct: 263 PQQQQQPPQPQAQPPPQNQ 281

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 48.5 bits (115), Expect = 1e-05
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 4/102 (3%)

Query: 559 VATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSF-SVCGRFLASAGGDGNVHMWDLSN 617
           +A+GS D +++LW    G  +  +   KA +  + F S  GR LA    D  V+ +DL N
Sbjct: 591 LASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRN 649

Query: 618 GHL-LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
             L L  + GH+  V  + F  D + L SS  D ++KLWD +
Sbjct: 650 PKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690

Length = 793

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 25/88 (28%), Positives = 27/88 (30%), Gaps = 3/88 (3%)

Query: 1   MDQLPSLMDDPPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPS-PQ 59
             +        P  S            PQQPP   Q Q      Q     P  Q P   Q
Sbjct: 210 HPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQM--PPPPPQPPQQQQ 267

Query: 60  PPAQPQQVPSPYHTPPPSQTSKQSGKAP 87
            P QPQ  P P + P P     Q   AP
Sbjct: 268 QPPQPQAQPPPQNQPTPHPGLPQGQNAP 295

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 47.1 bits (112), Expect = 3e-05
 Identities = 14/74 (18%), Positives = 15/74 (20%)

Query: 11  PPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPSPQPPAQPQQVPSP 70
                         +     PP  P  Q    P  Q    P  Q        Q Q  P P
Sbjct: 238 QQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLP 297

Query: 71  YHTPPPSQTSKQSG 84
               P      Q  
Sbjct: 298 PPQQPQLLPLVQQP 311

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 11  PPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPSPQPPAQPQQVP-S 69
           PP +         Q   PQ PP  PQ Q   SP QQ       Q P PQ  + PQ     
Sbjct: 124 PPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQ---QNPPPQAQSAPQVSGLY 180

Query: 70  PYHTPPPSQTSKQSGKAP 87
           P  +P   Q+   +   P
Sbjct: 181 PEESPYQPQSYPPNEPLP 198

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 17/87 (19%), Positives = 25/87 (28%)

Query: 1   MDQLPSLMDDPPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPSPQP 60
            D+   +       SF        + SP  PP S           +   SP   +  P P
Sbjct: 157 EDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAP 216

Query: 61  PAQPQQVPSPYHTPPPSQTSKQSGKAP 87
            +     P P    P + +      AP
Sbjct: 217 SSFQSDTPPPSPESPTNPSPPPGPAAP 243

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 16/72 (22%), Positives = 20/72 (27%), Gaps = 1/72 (1%)

Query: 11  PPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPSPQPPAQPQQVPSP 70
            PQ          Q   P+QPP  PQ         Q        + +P  P  P Q+P  
Sbjct: 180 LPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQ 239

Query: 71  YHTPPPSQTSKQ 82
              P        
Sbjct: 240 -PPPLQQPQFPG 250

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 10  DPPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPSPQPPAQPQQVPS 69
           +   +   S   IQQ    QQPP +      ++P +Q +     Q P+P        V  
Sbjct: 109 EQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQ 168

Query: 70  PYHTPPPSQTSK 81
                 P   ++
Sbjct: 169 A--VEAPKVEAE 178

Length = 256

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.4 bits (100), Expect = 8e-04
 Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 23  QQTLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPSPQPPAQPQQVPSPYHT----PPPSQ 78
                PQ  P   Q Q  +    Q    P      PQ P   QQ   P  +    PPP Q
Sbjct: 202 GYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQ 261

Query: 79  TSKQSGKAP 87
             +Q  + P
Sbjct: 262 PPQQQQQPP 270

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 42.2 bits (99), Expect = 8e-04
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 456 LVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSLL--------LWRCLVVYKGHGHPVW 506
           L GH   +  L F+P  S +L S S+D TIR+W +         +     + KGH   + 
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129

Query: 507 DIKFSPHGYY-FASAGHDRMARLW 529
            I ++P  YY   S+G D    +W
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIW 153

Length = 568

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 21/73 (28%), Positives = 24/73 (32%), Gaps = 5/73 (6%)

Query: 17  HSVPIIQQTLSPQQPPVSPQHQNMMSPI--QQHSLSPHTQAPSPQPPAQPQQVPSPYHTP 74
             V          Q P   Q Q   +P   Q  S  P  Q  S      PQQ P   + P
Sbjct: 67  QQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEP---YYP 123

Query: 75  PPSQTSKQSGKAP 87
           PPSQ      + P
Sbjct: 124 PPSQPQPPPAQQP 136

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 22/71 (30%), Positives = 24/71 (33%), Gaps = 7/71 (9%)

Query: 11  PPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSLSPH---TQAPSPQPPAQPQQV 67
            P  S    P   Q   PQQ    PQ Q    P  Q +  P     Q     PP QPQ +
Sbjct: 248 FPGLSQQMPPPPPQP--PQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLL 305

Query: 68  PSPYHTPPPSQ 78
           P      P  Q
Sbjct: 306 PL--VQQPQGQ 314

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 20/78 (25%), Positives = 23/78 (29%), Gaps = 3/78 (3%)

Query: 3   QLPSLMDDPPQESFHSVPIIQQTLSPQ--QPPVSPQHQNMMSPIQQHSLSPHTQAPSPQP 60
           Q P     PPQ      P  Q T  P   Q   +P        +      P  Q   PQ 
Sbjct: 261 QPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQF 320

Query: 61  PAQPQQVPSPYHTPPPSQ 78
             Q  Q+ S       SQ
Sbjct: 321 REQLVQL-SQQQREALSQ 337

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 6/78 (7%)

Query: 11   PPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPSPQPPAQPQQVPSP 70
                S  S  +          P +P               P    P P PP +PQ   +P
Sbjct: 2890 AVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP----PPQPQPPPPPPPRPQPPLAP 2945

Query: 71   YHTPPPSQTSKQSGKAPD 88
              T  P+   + SG  P 
Sbjct: 2946 --TTDPAGAGEPSGAVPQ 2961

Length = 3151

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 6/93 (6%)

Query: 1   MDQLPSLMDDPPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSL--SPHTQAPSP 58
           ++Q+ + M   P      VP  +QT    +  V  Q Q         +    P T     
Sbjct: 88  LEQMQADMRQQPT-QLSEVPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQT 146

Query: 59  QPPAQPQQVPSPYHTPP--PSQTSKQSGKAPDK 89
             P QPQ  P+P  T P  P   + ++ K   +
Sbjct: 147 TAPVQPQT-PAPVRTQPAAPVTQAVEAPKVEAE 178

Length = 256

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 542 GHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCV-TGSHVR-------LLTGHKAPVYAL 592
           GH S +  +QF+P  S  +A+GS D TIR+W+       V+       +L GHK  +  +
Sbjct: 72  GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII 131

Query: 593 SFSVCGRF-LASAGGDGNVHMWDLSN 617
            ++    + + S+G D  V++WD+ N
Sbjct: 132 DWNPMNYYIMCSSGFDSFVNIWDIEN 157

Length = 568

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 21/74 (28%), Positives = 24/74 (32%), Gaps = 1/74 (1%)

Query: 11   PPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPSPQPPAQPQQVPSP 70
               ESF   P   +     Q P  PQ Q    P  Q    P    P PQPP  P   P+ 
Sbjct: 2893 RSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPP-PRPQPPLAPTTDPAG 2951

Query: 71   YHTPPPSQTSKQSG 84
               P  +      G
Sbjct: 2952 AGEPSGAVPQPWLG 2965

Length = 3151

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 40.8 bits (95), Expect = 0.003
 Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 3/104 (2%)

Query: 3   QLPSLMDDPPQESFHSVPIIQQTLSPQQPPV-SPQHQNMMSPIQQHSLSPHTQAPSPQPP 61
           Q P       Q+    V    Q   PQQP    PQ+Q    P+         Q P   P 
Sbjct: 756 QQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV-APQ 814

Query: 62  AQPQQVPSPYHTPPPSQTSKQSGKAPDKNTLITMLKLLRQYNLR 105
            Q QQ   P    P  Q  +Q      ++TL+  L L+R  + R
Sbjct: 815 PQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPL-LMRNGDSR 857

Length = 1355

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 40.5 bits (94), Expect = 0.004
 Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 4   LPSLMDDPPQESFHSVPIIQQTLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPSPQPPAQ 63
           + +L+DD P E     P+    + P Q P  P          Q  ++P  Q   PQ P  
Sbjct: 732 MKALLDDGPHE-----PLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVA 786

Query: 64  PQQVPSPYHTPPPSQTSKQSGKAP 87
           PQ        P   Q   Q  + P
Sbjct: 787 PQPQYQQPQQPVAPQPQYQQPQQP 810

Length = 1355

>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 16/140 (11%)

Query: 445 MDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSC--SQDNTIRLWSLLLWRCLVVYKGHG 502
           + E         +  EGP+   ++SP+              I  + L   +  V++    
Sbjct: 44  IGETGGPDEVVELDKEGPIHDFAWSPNGKEFAVIYGYMPAKITFFDL---KGNVIHSLGE 100

Query: 503 HPVWDIKFSPHGYYFASAGHDRMA---RLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYV 559
            P   I +SP G     AG   +A     W   +   +       +  DC ++ P+  Y 
Sbjct: 101 QPRNTIFWSPFGRLVLLAGFGNLAGQIEFWDVKNKKKIATAE-ASNATDC-EWSPDGRYF 158

Query: 560 ATGSS------DRTIRLWDC 573
            T ++      D   ++W  
Sbjct: 159 LTATTSPRLRVDNGFKIWHY 178

This is a family of eukaryotic translation initiation factors. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	711
KOG0263|consensus	707		100.0
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0271|consensus	480		100.0
KOG0286|consensus	343		100.0
KOG0272|consensus	459		100.0
KOG0273|consensus	524		100.0
KOG0279|consensus	315		100.0
cd08044	133	TAF5_NTD2 TAF5_NTD2 is the second conserved N-term	100.0
PF04494	142	TFIID_90kDa: WD40 associated region in TFIID subun	100.0
KOG0295|consensus	406		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0273|consensus	524		100.0
KOG0286|consensus	343		100.0
KOG0315|consensus	311		100.0
KOG0284|consensus	464		100.0
KOG0291|consensus	893		100.0
KOG0279|consensus	315		100.0
KOG0291|consensus	893		100.0
KOG0266|consensus	456		100.0
KOG0281|consensus	499		100.0
KOG0285|consensus	460		100.0
KOG0263|consensus	707		100.0
KOG0293|consensus	519		100.0
KOG0265|consensus	338		100.0
KOG0318|consensus	603		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0645|consensus	312		100.0
KOG0282|consensus	503		100.0
KOG0316|consensus	307		100.0
KOG0295|consensus	406		100.0
KOG0284|consensus	464		100.0
KOG0319|consensus	775		100.0
KOG0276|consensus	794		100.0
KOG0275|consensus	508		100.0
KOG0266|consensus	456		100.0
KOG0319|consensus	775		100.0
KOG0296|consensus	399		100.0
KOG0318|consensus	603		100.0
KOG0306|consensus	888		100.0
KOG0315|consensus	311		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0281|consensus	499		100.0
KOG0285|consensus	460		99.98
KOG0292|consensus	1202		99.98
KOG0283|consensus	712		99.98
KOG0296|consensus	399		99.97
KOG0645|consensus	312		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0313|consensus	423		99.97
KOG0276|consensus	794		99.97
KOG0643|consensus	327		99.97
KOG0288|consensus	459		99.97
KOG0277|consensus	311		99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0274|consensus	537		99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0292|consensus	1202		99.97
KOG0299|consensus	479		99.96
KOG0640|consensus	430		99.96
KOG0973|consensus	942		99.96
KOG0265|consensus	338		99.96
KOG1407|consensus	313		99.96
KOG1446|consensus	311		99.96
KOG0306|consensus	888		99.96
KOG0772|consensus	641		99.96
KOG0274|consensus	537		99.96
KOG0282|consensus	503		99.96
KOG0305|consensus	484		99.96
KOG0313|consensus	423		99.96
KOG0973|consensus	942		99.96
KOG0278|consensus	334		99.96
KOG0289|consensus	506		99.96
KOG0264|consensus	422		99.96
KOG0316|consensus	307		99.96
KOG0643|consensus	327		99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0301|consensus	745		99.96
KOG0310|consensus	487		99.96
KOG0277|consensus	311		99.96
KOG0310|consensus	487		99.95
KOG0294|consensus	362		99.95
KOG0647|consensus	347		99.95
KOG0641|consensus	350		99.95
KOG0268|consensus	433		99.95
KOG0641|consensus	350		99.95
KOG0289|consensus	506		99.95
KOG0283|consensus	712		99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0267|consensus	825		99.94
KOG0308|consensus	735		99.94
KOG0305|consensus	484		99.94
KOG0639|consensus	705		99.94
KOG1407|consensus	313		99.94
KOG0300|consensus	481		99.94
KOG1332|consensus	299		99.94
KOG0275|consensus	508		99.94
KOG0278|consensus	334		99.94
KOG2096|consensus	420		99.94
KOG1408|consensus	1080		99.94
KOG0646|consensus	476		99.94
KOG0772|consensus	641		99.94
KOG2445|consensus	361		99.94
KOG0299|consensus	479		99.93
KOG0288|consensus	459		99.93
KOG1036|consensus	323		99.93
KOG0300|consensus	481		99.93
KOG0267|consensus	825		99.93
KOG0640|consensus	430		99.93
KOG1539|consensus	910		99.92
KOG0293|consensus	519		99.92
KOG1446|consensus	311		99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG1274|consensus	933		99.92
KOG4283|consensus	397		99.92
KOG1539|consensus	910		99.92
KOG0646|consensus	476		99.91
KOG1332|consensus	299		99.91
KOG0264|consensus	422		99.91
KOG2048|consensus	691		99.91
KOG1408|consensus	1080		99.91
KOG0269|consensus	839		99.91
KOG0301|consensus	745		99.91
KOG1273|consensus	405		99.91
KOG2106|consensus	626		99.91
KOG2055|consensus	514		99.91
KOG0308|consensus	735		99.9
KOG4283|consensus	397		99.9
KOG0268|consensus	433		99.9
KOG2445|consensus	361		99.89
KOG0269|consensus	839		99.89
KOG0639|consensus	705		99.89
KOG2096|consensus	420		99.89
KOG0650|consensus	733		99.89
KOG0270|consensus	463		99.89
KOG0302|consensus	440		99.89
KOG0302|consensus	440		99.88
KOG1063|consensus	764		99.88
KOG2106|consensus	626		99.88
KOG0294|consensus	362		99.88
KOG1274|consensus	933		99.88
KOG1063|consensus	764		99.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG0647|consensus	347		99.87
KOG1036|consensus	323		99.87
KOG0321|consensus	720		99.87
KOG4227|consensus	609		99.87
KOG2919|consensus	406		99.87
KOG4378|consensus	673		99.86
KOG0642|consensus	577		99.86
KOG0307|consensus	1049		99.86
KOG4328|consensus	498		99.85
KOG0321|consensus	720		99.85
KOG1445|consensus	1012		99.84
KOG1034|consensus	385		99.84
KOG2055|consensus	514		99.84
KOG2048|consensus	691		99.84
KOG1273|consensus	405		99.83
KOG1009|consensus	434		99.83
KOG0307|consensus	1049		99.82
KOG1007|consensus	370		99.82
KOG4378|consensus	673		99.82
KOG2919|consensus	406		99.81
KOG0270|consensus	463		99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG0644|consensus	1113		99.8
KOG4328|consensus	498		99.8
KOG0322|consensus	323		99.8
KOG1007|consensus	370		99.8
KOG1524|consensus	737		99.79
KOG1188|consensus	376		99.79
KOG0649|consensus	325		99.79
KOG1538|consensus	1081		99.79
KOG1538|consensus	1081		99.78
KOG0290|consensus	364		99.78
KOG0303|consensus	472		99.78
KOG1034|consensus	385		99.78
KOG0650|consensus	733		99.77
KOG1963|consensus	792		99.77
KOG1523|consensus	361		99.76
KOG1523|consensus	361		99.75
KOG0303|consensus	472		99.75
KOG1587|consensus	555		99.75
KOG0290|consensus	364		99.74
KOG2110|consensus	391		99.74
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
KOG0644|consensus	1113		99.74
KOG1587|consensus	555		99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG1188|consensus	376		99.72
KOG0642|consensus	577		99.71
KOG0771|consensus	398		99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG1334|consensus	559		99.7
KOG2111|consensus	346		99.7
KOG1517|consensus	1387		99.7
KOG0771|consensus	398		99.69
KOG1524|consensus	737		99.68
KOG1272|consensus	545		99.68
KOG1517|consensus	1387		99.68
KOG0649|consensus	325		99.68
KOG1009|consensus	434		99.67
KOG2394|consensus	636		99.67
PRK11028	330	6-phosphogluconolactonase; Provisional	99.67
KOG1310|consensus	758		99.67
KOG1445|consensus	1012		99.66
KOG2321|consensus	703		99.66
KOG1272|consensus	545		99.65
KOG2110|consensus	391		99.65
KOG2139|consensus	445		99.63
KOG1310|consensus	758		99.63
KOG4497|consensus	447		99.63
KOG1240|consensus	1431		99.63
KOG0322|consensus	323		99.62
KOG1963|consensus	792		99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.61
PRK03629	429	tolB translocation protein TolB; Provisional	99.61
PRK04922	433	tolB translocation protein TolB; Provisional	99.59
PRK05137	435	tolB translocation protein TolB; Provisional	99.59
PRK04922	433	tolB translocation protein TolB; Provisional	99.57
KOG1354|consensus	433		99.57
PRK02889	427	tolB translocation protein TolB; Provisional	99.57
KOG3881|consensus	412		99.57
KOG4227|consensus	609		99.56
PRK02889	427	tolB translocation protein TolB; Provisional	99.55
PRK05137	435	tolB translocation protein TolB; Provisional	99.54
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.54
KOG2394|consensus	636		99.53
KOG2139|consensus	445		99.52
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.52
KOG1240|consensus	1431		99.5
KOG2111|consensus	346		99.49
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.47
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.47
KOG3881|consensus	412		99.46
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.46
PRK00178	430	tolB translocation protein TolB; Provisional	99.43
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.43
KOG0974|consensus	967		99.42
PRK00178	430	tolB translocation protein TolB; Provisional	99.41
KOG4547|consensus	541		99.39
PRK01029	428	tolB translocation protein TolB; Provisional	99.39
PRK04792	448	tolB translocation protein TolB; Provisional	99.38
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.37
KOG2041|consensus	1189		99.37
KOG1334|consensus	559		99.37
KOG1409|consensus	404		99.37
KOG4497|consensus	447		99.37
PRK04792	448	tolB translocation protein TolB; Provisional	99.37
PRK01029	428	tolB translocation protein TolB; Provisional	99.36
KOG4547|consensus	541		99.36
KOG0280|consensus	339		99.34
KOG0974|consensus	967		99.34
KOG2315|consensus	566		99.33
KOG2321|consensus	703		99.33
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.28
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.25
KOG1064|consensus	2439		99.25
KOG4190|consensus	1034		99.23
KOG4190|consensus	1034		99.23
KOG1354|consensus	433		99.2
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.19
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.19
KOG1064|consensus	2439		99.18
KOG2314|consensus	698		99.18
COG4946	668	Uncharacterized protein related to the periplasmic	99.17
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.17
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.16
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.13
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.13
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.12
KOG1409|consensus	404		99.11
KOG0309|consensus	1081		99.1
KOG0280|consensus	339		99.1
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.1
KOG2315|consensus	566		99.07
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.07
PRK04043	419	tolB translocation protein TolB; Provisional	99.06
KOG2314|consensus	698		99.04
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.04
KOG4532|consensus	344		99.02
KOG2041|consensus	1189		99.01
KOG1924|consensus	1102		99.01
KOG1912|consensus	1062		99.0
PRK04043	419	tolB translocation protein TolB; Provisional	98.99
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.98
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.98
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.94
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.93
KOG1832|consensus	1516		98.91
COG4946	668	Uncharacterized protein related to the periplasmic	98.89
KOG4532|consensus	344		98.88
KOG3914|consensus	390		98.88
KOG3914|consensus	390		98.87
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.86
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.85
KOG4714|consensus	319		98.84
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.81
KOG2695|consensus	425		98.8
KOG0882|consensus	558		98.79
KOG0309|consensus	1081		98.77
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.77
KOG1912|consensus	1062		98.72
KOG1832|consensus	1516		98.71
KOG2066|consensus	846		98.7
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.68
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.67
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.67
KOG2695|consensus	425		98.66
KOG1275|consensus	1118		98.62
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.61
KOG2066|consensus	846		98.61
KOG1645|consensus	463		98.6
KOG4714|consensus	319		98.59
KOG1275|consensus	1118		98.58
KOG1920|consensus	1265		98.57
KOG2114|consensus	933		98.53
KOG2114|consensus	933		98.51
KOG1920|consensus	1265		98.49
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.46
KOG4649|consensus	354		98.42
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.41
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.4
KOG0882|consensus	558		98.39
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.33
KOG3617|consensus	1416		98.27
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.26
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.24
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.18
KOG1008|consensus	783		98.16
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.16
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.15
PRK02888	635	nitrous-oxide reductase; Validated	98.14
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.14
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.08
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.06
KOG1333|consensus	241		98.01
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.98
KOG3621|consensus	726		97.96
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.96
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.95
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.95
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.95
KOG1008|consensus	783		97.91
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.91
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.9
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.89
PRK02888	635	nitrous-oxide reductase; Validated	97.88
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.86
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.84
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.79
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.78
COG3391	381	Uncharacterized conserved protein [Function unknow	97.68
COG3391	381	Uncharacterized conserved protein [Function unknow	97.68
KOG3621|consensus	726		97.65
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.61
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.61
KOG1645|consensus	463		97.6
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.58
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.57
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.55
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.51
PRK10115	686	protease 2; Provisional	97.47
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.45
KOG2444|consensus	238		97.41
PRK13616	591	lipoprotein LpqB; Provisional	97.39
KOG4649|consensus	354		97.39
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.39
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.38
PRK13616	591	lipoprotein LpqB; Provisional	97.37
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.3
KOG3617|consensus	1416		97.26
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.24
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.21
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.16
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.13
PHA02713	557	hypothetical protein; Provisional	97.11
KOG4640|consensus	665		97.1
KOG4640|consensus	665		97.09
KOG2444|consensus	238		97.07
PRK15319	2039	AIDA autotransporter-like protein ShdA; Provisiona	97.07
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.97
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.95
KOG2395|consensus	644		96.92
KOG2079|consensus	1206		96.91
KOG1923|consensus	830		96.91
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.88
KOG1897|consensus	1096		96.8
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.79
KOG2079|consensus	1206		96.78
KOG2395|consensus	644		96.77
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	96.74
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.73
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.71
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.68
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.67
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.52
KOG4499|consensus	310		96.51
PRK10115	686	protease 2; Provisional	96.5
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.46
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.45
PRK13684	334	Ycf48-like protein; Provisional	96.45
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.36
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.34
PHA03098	534	kelch-like protein; Provisional	96.33
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.32
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.31
KOG3630|consensus	1405		96.29
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.29
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.23
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.12
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.08
PHA02713	557	hypothetical protein; Provisional	96.07
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.05
KOG1897|consensus	1096		95.9
KOG4441|consensus	571		95.89
KOG3630|consensus	1405		95.75
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.7
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.69
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	95.66
COG5276	370	Uncharacterized conserved protein [Function unknow	95.56
KOG1916|consensus	1283		95.55
PHA02790	480	Kelch-like protein; Provisional	95.43
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.4
KOG1830|consensus	518		95.34
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.33
KOG4441|consensus	571		95.29
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.21
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	95.2
COG5276	370	Uncharacterized conserved protein [Function unknow	94.96
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.94
KOG4499|consensus	310		94.89
KOG0396|consensus	389		94.86
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.76
KOG2280|consensus	829		94.66
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.65
PRK13684	334	Ycf48-like protein; Provisional	94.61
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.51
KOG2377|consensus	657		94.47
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.45
KOG4849|consensus	498		94.43
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.36
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	94.2
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.19
COG5167	776	VID27 Protein involved in vacuole import and degra	94.12
PHA03098	534	kelch-like protein; Provisional	94.08
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.05
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.94
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.72
PHA02790	480	Kelch-like protein; Provisional	93.62
KOG1916|consensus	1283		93.4
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.17
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.91
COG5167	776	VID27 Protein involved in vacuole import and degra	92.48
COG5178	2365	PRP8 U5 snRNP spliceosome subunit [RNA processing	92.38
KOG4590|consensus	409		92.31
KOG3616|consensus	1636		92.0
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	91.98
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.98
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.71
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	91.62
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.39
KOG4672|consensus	487		91.36
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.27
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	91.23
KOG2280|consensus	829		91.05
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.05
KOG2391|consensus	365		91.0
KOG4849|consensus	498		90.97
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	90.97
KOG2659|consensus	228		90.84
KOG1830|consensus	518		90.78
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.76
KOG2377|consensus	657		90.63
COG5178	2365	PRP8 U5 snRNP spliceosome subunit [RNA processing	90.53
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.21
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	89.94
KOG1922|consensus	833		89.94
KOG4460|consensus	741		89.78
PLN02153	341	epithiospecifier protein	89.74
KOG1983|consensus	993		89.5
PLN02193	470	nitrile-specifier protein	89.42
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	89.37
PRK10263	1355	DNA translocase FtsK; Provisional	89.33
PF03276	582	Gag_spuma: Spumavirus gag protein; InterPro: IPR00	89.33
KOG2247|consensus	615		89.3
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.88
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	88.78
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.77
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.74
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.7
KOG1900|consensus	1311		88.7
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	88.55
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	88.54
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	88.46
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	87.89
KOG4590|consensus	409		87.85
COG4590	733	ABC-type uncharacterized transport system, permeas	87.71
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	87.57

>KOG0263|consensus

Probab=100.00  E-value=2.4e-110  Score=908.26  Aligned_cols=626  Identities=47%  Similarity=0.821  Sum_probs=548.5

Q ss_pred             CCCChhHHHHHHHHHhhCCCchhHHHHHhhhccCCC--CCCCC------------------------C-------ccccc
Q psy14440         85 KAPDKNTLITMLKLLRQYNLRGTEEQLKKEINVNDL--GIDPN------------------------D-------SEIGD  131 (711)
Q Consensus        85 ~~~~~~~~~~v~~yl~k~g~~~~e~~l~~e~~~~~~--~~~~~------------------------~-------~~~~~  131 (711)
                      ....+..+++|++||+|+||++||++||+|+++.+.  ...+.                        +       .++..
T Consensus        18 ~~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   97 (707)
T KOG0263|consen   18 GSHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPV   97 (707)
T ss_pred             CcchHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchh
Confidence            344666788999999999999999999999876432  00000                        0       00000


Q ss_pred             cccccccCCChhHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcCCCcchHHHHHH
Q psy14440        132 LLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLR  211 (711)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~yl~lv~~~~~~~a~~f~~~~~~~~~~~~~~~~~  211 (711)
                      .......+..|+.|+++|.+||.||+.|||+||+||++||||+|||+||+|+.+++.+.||.||++|+.+|+.+|.++|.
T Consensus        98 ~~~~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~i~  177 (707)
T KOG0263|consen   98 EKALWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELSPILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSESIF  177 (707)
T ss_pred             hhccccccCCChhHhhhhhhcchhhhCcchhhhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHHHH
Confidence            00001111148899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcccccccHHHHHhhcCccEEEeCHHHHHHHHHHHhhcCh---hhHHHHhhcceEEEEccC-------------
Q psy14440        212 KLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKH---TVLLNIVQEHLYFDMYEG-------------  275 (711)
Q Consensus       212 ~l~~~~~~~~~~~~~~~~~~~~~k~~v~~s~~~~~~l~~~l~~~~~---~~~~~i~~~~~~~~~~~~-------------  275 (711)
                      +|..+..++||++|+.++.||+|||+|+|++++|++|++||++++.   ..|++|||+||.|+++++             
T Consensus       178 ~l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr~s~~lL~~~l~~~~~~~g~~i~~ii~~hldi~v~~~~~~r~~~~~~~~~  257 (707)
T KOG0263|consen  178 QLLSLETIKHIKENETARAFRKNKYVIRLSRDSFDLLLRFLQEDNNIGGTIIIKIINQHLDIDVFDGVMARRTTKPTAMV  257 (707)
T ss_pred             HHHhhhhHHHHhhhhhHHHHhhCcEEEEecHHHHHHHHHHhhhhccccchHHHHHHHHHhCccccccccccccccchhhc
Confidence            9999999999999999999999999999999999999999999876   899999999999999985             


Q ss_pred             ---------ccccccCccccccC-CCCCcccccCCCCCCCchhhhcCCCCCccchhhcccccccccCCCCCCCCCCCCCC
Q psy14440        276 ---------EATRQDNKAKIYYG-MPREPDLQNTIAVPDDDEEEAGEGGDKPKKKKAKKDSMFSKKTKSDPNAPPVDRIP  345 (711)
Q Consensus       276 ---------~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p  345 (711)
                               +++.+.|+.++++| ++++.+++... ....+.++...+++.+++++.++.....++++.++++|+.+++|
T Consensus       258 g~~~~~i~g~~~~e~~~~~~~l~~~~~e~~~~~~~-~~~~e~~D~~~~~~~~~~~~~~~~~~~~~~k~~d~~~ps~d~iP  336 (707)
T KOG0263|consen  258 GSEQESIAGEAKREINKQKVQLGLLLKEEEIEKKL-PILLEVEDDPNEPDNEKLKKPKKKKLLSEEKKRDPNAPSRDRIP  336 (707)
T ss_pred             ccccccccccchhhcccceeeecccccchhhhhcc-cccccCccccccccccccccchhhhhhhhhhccccCCCccccCC
Confidence                     23456678889999 56666665422 11111111122233444555555555666677888899999999


Q ss_pred             CCCCCchHHHHHHHHHHHhccccccCCCCCCceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeec
Q psy14440        346 LPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMK  425 (711)
Q Consensus       346 lp~~~~~~~~~~~~~~~~~~~r~~l~~~~lps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~  425 (711)
                      +|+.+..++..+++.+++.++|+.+++.++|++|+||+++....++|+.||+|+++||.|+.|++|++|++...+++.++
T Consensus       337 lPp~~~~d~~~~~~~l~d~~kr~~l~~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk  416 (707)
T KOG0263|consen  337 LPPLKQVDKLAELEALKDEQKRVKLGRNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLK  416 (707)
T ss_pred             CCcccchhHHHHHHHHHHHHHHhhcCCCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCE
Q psy14440        426 SSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV  505 (711)
Q Consensus       426 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V  505 (711)
                      ...+...+...+.|..+.+.|..+....+++.||+|+|++++|+|+.++|++||.|++||+|++.++.+++.|+||..+|
T Consensus       417 ~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PV  496 (707)
T KOG0263|consen  417 DASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPV  496 (707)
T ss_pred             chhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcce
Confidence            88888888888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC
Q psy14440        506 WDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH  585 (711)
Q Consensus       506 ~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h  585 (711)
                      |++.|+|.|.||||+|+|+++++|..+..+++|+|.||.++|.|+.||||++|+||||.|.+||+||+.+|..+|.|.||
T Consensus       497 wdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH  576 (707)
T KOG0263|consen  497 WDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH  576 (707)
T ss_pred             eeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccC
Q psy14440        586 KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVG  665 (711)
Q Consensus       586 ~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~  665 (711)
                      +++|++++|||+|++|++|+.||.|++||+.+|+++..+.+|++.|+++.||.||++||+||.|++|++||+.+......
T Consensus       577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~  656 (707)
T KOG0263|consen  577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLN  656 (707)
T ss_pred             CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988766522


Q ss_pred             cccccccccc-ccccccccceeeecccCCcceEEEEEccCCeeee-CC
Q psy14440        666 TEEVNLSHSA-DIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR-GP  711 (711)
Q Consensus       666 ~~~~~~~~~~-~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-Ga  711 (711)
                      ......+.+. ....+....+|.+|.||.+||.+|+|+++|++|| |+
T Consensus       657 ~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g~  704 (707)
T KOG0263|consen  657 LGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVGP  704 (707)
T ss_pred             ccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEecc
Confidence            2222222111 1123467889999999999999999999999999 85

>KOG0271|consensus

Probab=100.00  E-value=1.9e-47  Score=384.43  Aligned_cols=309  Identities=25%  Similarity=0.424  Sum_probs=282.9

Q ss_pred             ceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------eeeeccCccccccccccCCcEEEEE
Q psy14440        377 SIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-----------LKAMKSSDQLQDIEMECDDILVRIM  445 (711)
Q Consensus       377 s~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-----------~~~~~~~~~~~~l~~~~~d~~i~i~  445 (711)
                      .-|.-.+.+|.+.|.|+.|+|+|+.||+|+.|.++|+||+.+..           +..+..++++..|+.++.+|.|++|
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            44666789999999999999999999999999999999997753           4467788999999999999999999


Q ss_pred             ecCCCeeE-EEeecccCCEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy14440        446 DERNAETT-RTLVGHEGPVRKLSFSP-----DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFAS  519 (711)
Q Consensus       446 d~~~~~~~-~~l~~h~~~V~~l~fsp-----dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~s  519 (711)
                      |..+++.+ +.|.+|+..|++++|.|     ..++|+++|.||+|+|||+..++++..+.+|..+|+|++|..+| ++++
T Consensus       185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liyS  263 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYS  263 (480)
T ss_pred             cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEe
Confidence            98887764 78999999999999976     66799999999999999999999999999999999999998766 9999


Q ss_pred             EECCCeEEEEECCCCceeEEeecCCCCeeEEEEc-----------CCCC-------------------------EEEEEE
Q psy14440        520 AGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFH-----------PNSN-------------------------YVATGS  563 (711)
Q Consensus       520 gs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~s-----------p~~~-------------------------~latgs  563 (711)
                      ||.|++|++|+...+...+++.||...|+.++.+           +.++                         .+++||
T Consensus       264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs  343 (480)
T KOG0271|consen  264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS  343 (480)
T ss_pred             cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence            9999999999999999999999999999999876           3333                         499999


Q ss_pred             cCCcEEEEECCCC-cEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCE
Q psy14440        564 SDRTIRLWDCVTG-SHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNI  642 (711)
Q Consensus       564 ~Dg~I~iwD~~~~-~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~  642 (711)
                      +|.++.+|+-... +++..+.+|..-|+.+.||||+++||+++.|.+|++||.++|+.+.+|+||-+.|+.++|+.|.++
T Consensus       344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL  423 (480)
T KOG0271|consen  344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL  423 (480)
T ss_pred             CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence            9999999997544 578889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        643 LASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       643 Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      |++|+.|.+++|||+++                       ..+..-+++|...|+.|.|++||..+|
T Consensus       424 lVS~SkDsTLKvw~V~t-----------------------kKl~~DLpGh~DEVf~vDwspDG~rV~  467 (480)
T KOG0271|consen  424 LVSGSKDSTLKVWDVRT-----------------------KKLKQDLPGHADEVFAVDWSPDGQRVA  467 (480)
T ss_pred             EEEcCCCceEEEEEeee-----------------------eeecccCCCCCceEEEEEecCCCceee
Confidence            99999999999999975                       233345888999999999999999999

>KOG0272|consensus

Probab=100.00  E-value=1.6e-42  Score=353.59  Aligned_cols=276  Identities=27%  Similarity=0.447  Sum_probs=259.5

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      ++.-.+-...|..+.||.|++.||||+-+|.++||+..                               +...+.+|.||
T Consensus       168 ~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~-------------------------------~~~~~~~l~gH  216 (459)
T KOG0272|consen  168 VCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVP-------------------------------QCNLLQTLRGH  216 (459)
T ss_pred             hhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecC-------------------------------CcceeEEEecc
Confidence            34446677899999999999999999999999999974                               34567899999


Q ss_pred             cCCEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee
Q psy14440        460 EGPVRKLSFSPD--RSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       460 ~~~V~~l~fspd--g~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      .+.|.++.|+|.  +..|+||+.||+|++|++.+...+..+.+|...|..++|+|+|++++|++.|.+.++||++++..+
T Consensus       217 ~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El  296 (459)
T KOG0272|consen  217 TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL  296 (459)
T ss_pred             ccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhh
Confidence            999999999996  568999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy14440        538 RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       538 ~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s  617 (711)
                      ....||...|.+++|+++|..+++|+.|..-||||+++|+++..+.+|...|.+++|+|+|-.|||||.|++++|||++.
T Consensus       297 L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~  376 (459)
T KOG0272|consen  297 LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM  376 (459)
T ss_pred             HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcce
Q psy14440        618 GHLLTLLTGHTDVVRALCFSR-DGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPL  696 (711)
Q Consensus       618 g~~i~~l~~h~~~V~sl~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV  696 (711)
                      .+.+..+.+|.+-|+.+.|+| .|.+|+|+|.|++++||.-.+                       ..++.++.+|.+.|
T Consensus       377 r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~-----------------------~~~~ksLaGHe~kV  433 (459)
T KOG0272|consen  377 RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT-----------------------WSPLKSLAGHEGKV  433 (459)
T ss_pred             cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCC-----------------------cccchhhcCCccce
Confidence            999999999999999999998 789999999999999998654                       34566789999999


Q ss_pred             EEEEEccCCeeee
Q psy14440        697 LHLIFSRRNILLR  709 (711)
Q Consensus       697 ~~v~Fs~~n~lla  709 (711)
                      .+|..++++.+++
T Consensus       434 ~s~Dis~d~~~i~  446 (459)
T KOG0272|consen  434 ISLDISPDSQAIA  446 (459)
T ss_pred             EEEEeccCCceEE
Confidence            9999999999988

>KOG0271|consensus

Probab=100.00  E-value=4.4e-42  Score=345.75  Aligned_cols=277  Identities=31%  Similarity=0.492  Sum_probs=253.3

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee------------eec-----cCccccccccccCCcE
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLK------------AMK-----SSDQLQDIEMECDDIL  441 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~------------~~~-----~~~~~~~l~~~~~d~~  441 (711)
                      .+++..+|..-|.|++|||||+.||+|+.||.|++||-.+++..            .+.     .......++.++.||.
T Consensus       149 p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~  228 (480)
T KOG0271|consen  149 PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS  228 (480)
T ss_pred             cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCC
Confidence            46788999999999999999999999999999999997654421            121     1234557788889999


Q ss_pred             EEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEc----------
Q psy14440        442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFS----------  511 (711)
Q Consensus       442 i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~s----------  511 (711)
                      ++|||...+..+..+.||+.+|+|++|--+| +|++||.|++|++|+...|.+...+++|...|+.++.+          
T Consensus       229 vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf  307 (480)
T KOG0271|consen  229 VRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF  307 (480)
T ss_pred             EEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence            9999999999999999999999999997555 89999999999999999999999999999999999877          


Q ss_pred             -CCCC-------------------------EEEEEECCCeEEEEECCC-CceeEEeecCCCCeeEEEEcCCCCEEEEEEc
Q psy14440        512 -PHGY-------------------------YFASAGHDRMARLWATDS-YHPLRLFVGHYSDVDCVQFHPNSNYVATGSS  564 (711)
Q Consensus       512 -p~g~-------------------------~l~sgs~Dg~i~lwd~~~-~~~~~~~~~h~~~V~~v~~sp~~~~latgs~  564 (711)
                       +.++                         .+++|+.|.++.+|+... .+++..+.+|..-|+.+.|+||++|||++|-
T Consensus       308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF  387 (480)
T KOG0271|consen  308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF  387 (480)
T ss_pred             ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec
Confidence             2333                         499999999999998754 4688889999999999999999999999999


Q ss_pred             CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEE
Q psy14440        565 DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILA  644 (711)
Q Consensus       565 Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~La  644 (711)
                      |+.|++||.++|+.+.+|.||-+.|+.++|+.|.++|++|+.|.++++||+++.++...+.||.+.|.++.|+|||..++
T Consensus       388 DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~  467 (480)
T KOG0271|consen  388 DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA  467 (480)
T ss_pred             ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEe
Q psy14440        645 SSGQDCSVKLWD  656 (711)
Q Consensus       645 sgs~Dg~V~iWd  656 (711)
                      +|+.|..+++|.
T Consensus       468 sggkdkv~~lw~  479 (480)
T KOG0271|consen  468 SGGKDKVLRLWR  479 (480)
T ss_pred             cCCCceEEEeec
Confidence            999999999995

>KOG0286|consensus

Probab=100.00  E-value=1.6e-39  Score=318.00  Aligned_cols=275  Identities=27%  Similarity=0.420  Sum_probs=255.4

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCC-cee----------eeccCccccccccccCCcEEEEEecCC
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQ-KLK----------AMKSSDQLQDIEMECDDILVRIMDERN  449 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~-~~~----------~~~~~~~~~~l~~~~~d~~i~i~d~~~  449 (711)
                      .++.+|.+.|.++.|++|+++|++++.||.+.|||.-+. +..          ...+++..+.++.++-|+...||+..+
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~  128 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST  128 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence            569999999999999999999999999999999997553 332          345677888899999999999998775


Q ss_pred             C------eeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcC-CCCEEEEEEC
Q psy14440        450 A------ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP-HGYYFASAGH  522 (711)
Q Consensus       450 ~------~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~  522 (711)
                      .      ...+.+.+|++.+.|+.|-.| ..|+++|.|.++.+||+++++.+..|.+|.+.|.+++++| +++.|++|+-
T Consensus       129 ~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c  207 (343)
T KOG0286|consen  129 RDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC  207 (343)
T ss_pred             ccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc
Confidence            4      456789999999999999875 5799999999999999999999999999999999999999 9999999999


Q ss_pred             CCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC--CCCCeEEEEEecCCCE
Q psy14440        523 DRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG--HKAPVYALSFSVCGRF  600 (711)
Q Consensus       523 Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~--h~~~I~~la~spdg~~  600 (711)
                      |++.++||++.+.+++.|.+|.++|++|+|+|+|.-+++|+.|+++|+||++..+.+..|..  -..+|++++||..|++
T Consensus       208 D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl  287 (343)
T KOG0286|consen  208 DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL  287 (343)
T ss_pred             ccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE
Confidence            99999999999999999999999999999999999999999999999999999999988873  3468999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        601 LASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       601 Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      |++|..|.++.+||.-.++.+..+.||.+.|++|..+|||.-+++||.|.+||||.
T Consensus       288 Lfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  288 LFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999999999999999999999999999999999999994

>KOG0272|consensus

Probab=100.00  E-value=1e-40  Score=340.39  Aligned_cols=247  Identities=31%  Similarity=0.485  Sum_probs=236.8

Q ss_pred             EEEEEecCCCceEEEEECCC--CCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        379 ACYTLLNARQQVTCAEISED--VSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~d--g~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      ...+|.+|.+.|.++.|+|.  +.-||+|+.||+|++|++++                               ...+..+
T Consensus       209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~-------------------------------e~~l~~l  257 (459)
T KOG0272|consen  209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ-------------------------------ETPLQDL  257 (459)
T ss_pred             eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC-------------------------------Ccchhhh
Confidence            45689999999999999997  56999999999999999853                               2456678


Q ss_pred             ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP  536 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~  536 (711)
                      .+|...|..++|+|+|++|+|+|.|.+-++||+.++..+....||...|.+++|.++|..++|||.|...+|||++++.+
T Consensus       258 ~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~  337 (459)
T KOG0272|consen  258 EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC  337 (459)
T ss_pred             hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEEC
Q psy14440        537 LRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSV-CGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       537 ~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~sp-dg~~Lasgs~Dg~I~iwDl  615 (711)
                      +..+.+|...|..|+|+|||..|||||.|++++|||++..+.+.++-+|..-|+.++|+| .|.+|+|++.|++++||..
T Consensus       338 im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~  417 (459)
T KOG0272|consen  338 IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST  417 (459)
T ss_pred             EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence            999999999999999999999999999999999999999999999999999999999998 7899999999999999999


Q ss_pred             CCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        616 SNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       616 ~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      .++.+++.+.||.+.|.++..++|+.+++|++.|.++++|.
T Consensus       418 ~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  418 RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999999999999999999999999999999999995

>KOG0273|consensus

Probab=100.00  E-value=4.1e-37  Score=317.52  Aligned_cols=303  Identities=24%  Similarity=0.429  Sum_probs=272.1

Q ss_pred             EEEecCCCceEEEEECCCCC-EEEEEeCCCeEEEEeCCC-------------------------CceeeeccCccccccc
Q psy14440        381 YTLLNARQQVTCAEISEDVS-ILAVGFSESYIKLWSLVP-------------------------QKLKAMKSSDQLQDIE  434 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~-~LatG~~dg~I~vWdl~~-------------------------~~~~~~~~~~~~~~l~  434 (711)
                      .++.+|...|.+++|+|-.. ++|+|+.|...++|++..                         +.+..+.++.++..++
T Consensus       172 ~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La  251 (524)
T KOG0273|consen  172 AKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA  251 (524)
T ss_pred             eeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence            34555999999999999776 999999999999999864                         1244566777788899


Q ss_pred             cccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCC
Q psy14440        435 MECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG  514 (711)
Q Consensus       435 ~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g  514 (711)
                      .+..+|.+++|+. .+..+.+|..|+++|.++.|+.+|.+|++++.|+++.+||..+++....+.-|..+-.+|.|-.+ 
T Consensus       252 tG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-  329 (524)
T KOG0273|consen  252 TGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-  329 (524)
T ss_pred             EeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-
Confidence            9999999999994 67778899999999999999999999999999999999999999999999999999889999854 


Q ss_pred             CEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEE
Q psy14440        515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSF  594 (711)
Q Consensus       515 ~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~  594 (711)
                      ..|++++.|+.|+++-+....++.++.+|.+.|.++.|+|.+..|+++|+|++++||....+.++..+.+|...|+.+.|
T Consensus       330 ~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~w  409 (524)
T KOG0273|consen  330 DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKW  409 (524)
T ss_pred             ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEee
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCC---------CEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccC
Q psy14440        595 SVCG---------RFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVG  665 (711)
Q Consensus       595 spdg---------~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~  665 (711)
                      +|+|         ..|++++.|++|++||+..|.++..+..|..+|++++|+|+|++||+|+.||.|++|+.+..     
T Consensus       410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~-----  484 (524)
T KOG0273|consen  410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG-----  484 (524)
T ss_pred             cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch-----
Confidence            9975         47999999999999999999999999999999999999999999999999999999998753     


Q ss_pred             ccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        666 TEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                                        .++.+|.. ...|+.|.|+-+|..|+
T Consensus       485 ------------------~l~~s~~~-~~~Ifel~Wn~~G~kl~  509 (524)
T KOG0273|consen  485 ------------------KLVKSYQG-TGGIFELCWNAAGDKLG  509 (524)
T ss_pred             ------------------heeEeecC-CCeEEEEEEcCCCCEEE
Confidence                              33333333 33488999998877765

>KOG0279|consensus

Probab=100.00  E-value=1.6e-36  Score=295.35  Aligned_cols=289  Identities=28%  Similarity=0.424  Sum_probs=244.5

Q ss_pred             EEEEEecCCCceEEEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        379 ACYTLLNARQQVTCAEISED-VSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~d-g~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      ..-++.+|.+.|+.++..+. ...+.+++.|..|.+|++...                          |...+...+.+.
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d--------------------------d~~~G~~~r~~~   60 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD--------------------------DIKYGVPVRRLT   60 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC--------------------------ccccCceeeeee
Confidence            34578999999999999987 578899999999999999643                          345678899999


Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      ||+..|..+..++||++.+++|.|+++++||+.+++..+.|.+|...|.+++|+++.+.+++|+.|++|++|++......
T Consensus        61 GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~  140 (315)
T KOG0279|consen   61 GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY  140 (315)
T ss_pred             ccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999865444


Q ss_pred             EEeec-CCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q psy14440        538 RLFVG-HYSDVDCVQFHPN--SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD  614 (711)
Q Consensus       538 ~~~~~-h~~~V~~v~~sp~--~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwD  614 (711)
                      ....+ +...|.|++|+|+  .-+|+.++.|++|++||+++.+....+.||.+.++.+++||||...++|+.||.+.+||
T Consensus       141 t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lwd  220 (315)
T KOG0279|consen  141 TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWD  220 (315)
T ss_pred             EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEE
Confidence            44433 3789999999998  67899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCc
Q psy14440        615 LSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKAS  694 (711)
Q Consensus       615 l~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~  694 (711)
                      ++.++.+..+. |...|.+++|+|+.-.|+.+. +..|+|||+.........   +.      +.  .+.   +.+...-
T Consensus       221 L~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l---~~------d~--~g~---s~~~~~~  284 (315)
T KOG0279|consen  221 LNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEEL---KL------DG--IGP---SSKAGDP  284 (315)
T ss_pred             ccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhc---cc------cc--ccc---ccccCCc
Confidence            99999987775 678999999999876666554 567999999864322110   00      00  000   1222233


Q ss_pred             ceEEEEEccCCeeee
Q psy14440        695 PLLHLIFSRRNILLR  709 (711)
Q Consensus       695 pV~~v~Fs~~n~lla  709 (711)
                      ...+++|+.||+-|.
T Consensus       285 ~clslaws~dG~tLf  299 (315)
T KOG0279|consen  285 ICLSLAWSADGQTLF  299 (315)
T ss_pred             EEEEEEEcCCCcEEE
Confidence            457889999998765

>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

Probab=100.00  E-value=9e-38  Score=287.92  Aligned_cols=132  Identities=46%  Similarity=0.792  Sum_probs=129.3

Q ss_pred             hhHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcCCCcchHHHHHHHHhcCCCccc
Q psy14440        142 PNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQ  221 (711)
Q Consensus       142 ~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~yl~lv~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~  221 (711)
                      |+.|+++|.+||+||+++||+||+||.+||||||||+||+||++|+.++|++||++|+++|+++|+++|++|+.|++|+|
T Consensus         1 ~~~y~~~y~~l~~wv~~~ld~~k~EL~~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~   80 (133)
T cd08044           1 PNDYEQAYSKLRKWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEH   80 (133)
T ss_pred             ChHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHhhcCccEEEeCHHHHHHHHHHHhhcChhhHHHHhhcceEEEEc
Q psy14440        222 IRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMY  273 (711)
Q Consensus       222 ~~~~~~~~~~~~~k~~v~~s~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~  273 (711)
                      +++|+++++||+|||+|+||++++++|++||++++++++++|||+|+.+++.
T Consensus        81 l~~n~~~~~~r~~Ky~i~ms~~s~~lL~~~L~~~~~~~~~~il~~~i~~~~~  132 (133)
T cd08044          81 LKENELAKLFRSNKYVIRMSRDAYSLLLRFLESWGGSLLLKILNEHIDIDVR  132 (133)
T ss_pred             HhhhHHHHHHHhCCEEEEECHHHHHHHHHHHHHCCcHHHHHHHHhccccccc
Confidence            9999999999999999999999999999999999999999999999888764

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various

>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID

Probab=100.00  E-value=2.7e-37  Score=287.79  Aligned_cols=137  Identities=47%  Similarity=0.783  Sum_probs=126.4

Q ss_pred             ccccccCCChhHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcCCCcchHHHHHHH
Q psy14440        133 LSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRK  212 (711)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~yl~lv~~~~~~~a~~f~~~~~~~~~~~~~~~~~~  212 (711)
                      ++++..+.||+.|+++|.+|++||++|||+||+||++||||||||+||+||++|+.++|++||+||+++|+.+|.++|++
T Consensus         3 ~~~~~~~~~p~~y~~~y~~l~~wv~~sld~yK~EL~~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~   82 (142)
T PF04494_consen    3 LSRSIEENDPDKYEQAYSRLRNWVDNSLDIYKPELSRLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEK   82 (142)
T ss_dssp             HGGGSS---GCCHHHHHHHHHHHHHTS-HHHHHHHGGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHH
T ss_pred             HhhccccCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcccccccHHHHHhhcCccEEEeCHHHHHHHHHHHhhcChh---hHHHHhhcceE
Q psy14440        213 LSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHT---VLLNIVQEHLY  269 (711)
Q Consensus       213 l~~~~~~~~~~~~~~~~~~~~~k~~v~~s~~~~~~l~~~l~~~~~~---~~~~i~~~~~~  269 (711)
                      |+.|++++|+++|+++++||+|||+|+||++++.+|+.||++++..   +|++|||+||+
T Consensus        83 L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~~fL~~~~~~g~~~ll~iin~~i~  142 (142)
T PF04494_consen   83 LSSITSPEHLEENELARLFRSNKYVIRLSRDSFSLLLQFLQENENSGGSVLLRIINQHIQ  142 (142)
T ss_dssp             HTT--SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHHHHHHHTTCHTHHHHHHHHHHHEE
T ss_pred             HHhhCcHHHHhccHHHHHHHhCCeeEEECHHHHHHHHHHHHhCCcchHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999888   99999999985

The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.

>KOG0295|consensus

Probab=100.00  E-value=1.7e-35  Score=297.28  Aligned_cols=278  Identities=25%  Similarity=0.454  Sum_probs=256.4

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee-----------eeccCccccccccccCCcEEEEEecC
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLK-----------AMKSSDQLQDIEMECDDILVRIMDER  448 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~-----------~~~~~~~~~~l~~~~~d~~i~i~d~~  448 (711)
                      .+.+.+|...|+.+-|+|+-.++++++.|++|++||..++.+.           .+.+...+..++..+.|-.+.+||..
T Consensus       101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~  180 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD  180 (406)
T ss_pred             hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence            3456789999999999999999999999999999999887643           23344455666777777779999976


Q ss_pred             C-CeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEE
Q psy14440        449 N-AETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMAR  527 (711)
Q Consensus       449 ~-~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~  527 (711)
                      + .+.++.+.+|...|.+++|-|.|.+++||+.|.+|+.|++.++-++.++.+|...|..++.+.||.++++++.|.+++
T Consensus       181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~  260 (406)
T KOG0295|consen  181 TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLR  260 (406)
T ss_pred             HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEE
Confidence            6 667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEeecCCCCeeEEEEcCC----------C-----CEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEE
Q psy14440        528 LWATDSYHPLRLFVGHYSDVDCVQFHPN----------S-----NYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL  592 (711)
Q Consensus       528 lwd~~~~~~~~~~~~h~~~V~~v~~sp~----------~-----~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~l  592 (711)
                      +|-+.++++...+.+|.-.|.|++|.|.          +     .++++++.|++|++||+.+|.|+.++.||...|..+
T Consensus       261 vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~  340 (406)
T KOG0295|consen  261 VWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGV  340 (406)
T ss_pred             EEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeee
Confidence            9999999999999999999999999773          2     489999999999999999999999999999999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        593 SFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       593 a~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      +|+|.|+||+++.+|+++++||++++++++.+..|...|+++.|+.+..++++|+-|.++++|.-
T Consensus       341 af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  341 AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999974

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.8e-34  Score=292.98  Aligned_cols=275  Identities=36%  Similarity=0.623  Sum_probs=252.3

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-----------eeeccCccccccccccCCcEEEEEecCCC
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKL-----------KAMKSSDQLQDIEMECDDILVRIMDERNA  450 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~-----------~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  450 (711)
                      ++.+|.+.|++++|++++++|++|+.||.|++|++.+.+.           ..+....+...+++++.++.+.+|+..++
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence            4668999999999999999999999999999999976532           12334444556778888999999999988


Q ss_pred             eeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q psy14440        451 ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA  530 (711)
Q Consensus       451 ~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd  530 (711)
                      +....+..|...|.++.|+++++++++++.||.|++||+.+++....+..|...|.+++|++++.++++++.|+.+++||
T Consensus        84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d  163 (289)
T cd00200          84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD  163 (289)
T ss_pred             cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEE
Confidence            88889999999999999999988899888899999999999999999999999999999999998999888899999999


Q ss_pred             CCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy14440        531 TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNV  610 (711)
Q Consensus       531 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I  610 (711)
                      +++++.+..+..|...+.+++|+++++++++++.|+.|++||+++++.+..+..|...+.+++|++++.++++++.||.|
T Consensus       164 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i  243 (289)
T cd00200         164 LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTI  243 (289)
T ss_pred             ccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcE
Confidence            99999899999999999999999999999999999999999999999999998899999999999999999998889999


Q ss_pred             EEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        611 HMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       611 ~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      ++||+.+++.+..+.+|...|.+++|++++++|++++.||.|++|+
T Consensus       244 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         244 RVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999999999999999999999999999999999999999999996

>KOG0273|consensus

Probab=100.00  E-value=2e-34  Score=297.78  Aligned_cols=270  Identities=24%  Similarity=0.422  Sum_probs=251.4

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc----------eeeeccCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK----------LKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~----------~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      +..|+|++|+.+|++||+|+.||.++||+..+..          +..++++..+..|..++-|+++.+||..+++....+
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f  314 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF  314 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence            4689999999999999999999999999997643          556777888889999999999999999999999999


Q ss_pred             ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP  536 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~  536 (711)
                      .-|+.+-..+.|-. ...+++++.||.|+|+.+.....+.++.+|.+.|.++.|+|.|..|+++|.|++++||+......
T Consensus       315 ~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~  393 (524)
T KOG0273|consen  315 EFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS  393 (524)
T ss_pred             eeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc
Confidence            99999988899974 44689999999999999999999999999999999999999999999999999999999988888


Q ss_pred             eEEeecCCCCeeEEEEcCCC---------CEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC
Q psy14440        537 LRLFVGHYSDVDCVQFHPNS---------NYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       537 ~~~~~~h~~~V~~v~~sp~~---------~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D  607 (711)
                      ...+.+|...|..+.|+|.|         ..+++++.|++|++||+..|.++..|..|..+|++++|||+|+|+|+|+.|
T Consensus       394 ~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~d  473 (524)
T KOG0273|consen  394 VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLD  473 (524)
T ss_pred             hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCC
Confidence            88999999999999999954         468999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        608 GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       608 g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      |.|.||++++++.++.+.+. +.|..++|+.+|+.|..+-.||.+++-|++
T Consensus       474 g~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  474 GCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            99999999999999999864 569999999999999999999999999986

>KOG0286|consensus

Probab=100.00  E-value=4.8e-34  Score=279.59  Aligned_cols=270  Identities=20%  Similarity=0.327  Sum_probs=247.5

Q ss_pred             CCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----
Q psy14440        417 VPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW----  492 (711)
Q Consensus       417 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~----  492 (711)
                      ...++..+.++.+...++.++.||.+.|||..+....+.+.-.+..|..++|+|.|+++++|+-|+...||++.+.    
T Consensus        54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g  133 (343)
T KOG0286|consen   54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEG  133 (343)
T ss_pred             cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccc
Confidence            3345666677788889999999999999999999988888888999999999999999999999999999999755    


Q ss_pred             --eEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEE
Q psy14440        493 --RCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIR  569 (711)
Q Consensus       493 --~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~  569 (711)
                        ...+.+.+|.+.+.|+.|-.++ .|+|+|.|.++.+||+++++.+..|.||.++|.++.++| +++.+++|+.|++.+
T Consensus       134 ~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak  212 (343)
T KOG0286|consen  134 NVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK  212 (343)
T ss_pred             cceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence              3455688999999999999854 889999999999999999999999999999999999999 999999999999999


Q ss_pred             EEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCC--CCCEEEEEEeCCCCEEEEEe
Q psy14440        570 LWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGH--TDVVRALCFSRDGNILASSG  647 (711)
Q Consensus       570 iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h--~~~V~sl~fspdg~~Lasgs  647 (711)
                      +||++.+.+++.|.+|.+.|++++|.|+|.-+++|++|++.++||++..+.+..+...  ..+|++++||..|++|++|.
T Consensus       213 lWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy  292 (343)
T KOG0286|consen  213 LWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY  292 (343)
T ss_pred             eeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee
Confidence            9999999999999999999999999999999999999999999999999998888733  36899999999999999999


Q ss_pred             CCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee-C
Q psy14440        648 QDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR-G  710 (711)
Q Consensus       648 ~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-G  710 (711)
                      .|.++.|||.-+                       ...+..+.+|...|.+|.-|+||..+| |
T Consensus       293 ~d~~c~vWDtlk-----------------------~e~vg~L~GHeNRvScl~~s~DG~av~Tg  333 (343)
T KOG0286|consen  293 DDFTCNVWDTLK-----------------------GERVGVLAGHENRVSCLGVSPDGMAVATG  333 (343)
T ss_pred             cCCceeEeeccc-----------------------cceEEEeeccCCeeEEEEECCCCcEEEec
Confidence            999999999753                       344566889999999999999999999 7

>KOG0315|consensus

Probab=100.00  E-value=4.1e-34  Score=274.25  Aligned_cols=256  Identities=23%  Similarity=0.412  Sum_probs=229.0

Q ss_pred             CCceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEE
Q psy14440        375 LPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTR  454 (711)
Q Consensus       375 lps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  454 (711)
                      +-.+|..|+....+.|+.+.+.||+++||+|+.- .||+||+.+.                             +...+.
T Consensus        28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~-----------------------------np~Pv~   77 (311)
T KOG0315|consen   28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSN-----------------------------NPNPVA   77 (311)
T ss_pred             hcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCC-----------------------------CCCcee
Confidence            3568899999999999999999999999999764 5999998643                             334678


Q ss_pred             EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       455 ~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      ++.+|++.|+++.|..+|+++++||+||+++|||++...+.+.|+ |..+|+++..+|+...|++|..+|.|++||+...
T Consensus        78 t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen   78 TFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             EEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence            899999999999999999999999999999999999988888777 7799999999999999999999999999999987


Q ss_pred             ceeEEee-cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc------EEEEeeCCCCCeEEEEEecCCCEEEEEeCC
Q psy14440        535 HPLRLFV-GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS------HVRLLTGHKAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       535 ~~~~~~~-~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~------~v~~~~~h~~~I~~la~spdg~~Lasgs~D  607 (711)
                      .+.+.+. .....|.++..+|+|.+++.+...|++++|++-++.      .+..|..|.+.+..+.+|||+++||+++.|
T Consensus       157 ~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd  236 (311)
T KOG0315|consen  157 SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD  236 (311)
T ss_pred             ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence            6665543 345679999999999999999999999999987643      455678899999999999999999999999


Q ss_pred             CcEEEEECCCC-eEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        608 GNVHMWDLSNG-HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       608 g~I~iwDl~sg-~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      .+++||++.+. +....+.+|...++..+||.||.||++|+.|+.+++||+...+
T Consensus       237 ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  237 KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             ceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence            99999999887 6677889999999999999999999999999999999998644

>KOG0284|consensus

Probab=100.00  E-value=5.1e-36  Score=304.63  Aligned_cols=276  Identities=26%  Similarity=0.443  Sum_probs=249.7

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEeCCC-----------CceeeeccCccccccccccCCcEEEEEecCCCeeEEE
Q psy14440        387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVP-----------QKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRT  455 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~-----------~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  455 (711)
                      +..|..+.|.|+|+.|++|+..|.+.+|+..+           ..++.+..+.+...+..+..+|.|++|+.+- ..++.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~  174 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKI  174 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHH
Confidence            45799999999999999999999999999744           2366778888889999999999999999654 34455


Q ss_pred             eeccc-CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        456 LVGHE-GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       456 l~~h~-~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      +.+|. ..|.+++|||+...+++||.||+|+|||....+....+.||...|.+++|+|....+++||.|..|++||.+++
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg  254 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG  254 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence            55554 89999999999999999999999999999988888899999999999999999999999999999999999999


Q ss_pred             ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecC-CCEEEEEeCCCcEEEE
Q psy14440        535 HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVC-GRFLASAGGDGNVHMW  613 (711)
Q Consensus       535 ~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spd-g~~Lasgs~Dg~I~iw  613 (711)
                      .++.++.+|...|..+.|++++++|+|+|.|..+++||+++.+.++.+.+|+..|++++|+|- ..+|.+|+.||.|..|
T Consensus       255 ~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~  334 (464)
T KOG0284|consen  255 SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHW  334 (464)
T ss_pred             chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEE
Confidence            999999999999999999999999999999999999999999999999999999999999995 5688899999999999


Q ss_pred             ECCCCeEEEEe-eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCc
Q psy14440        614 DLSNGHLLTLL-TGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDE  663 (711)
Q Consensus       614 Dl~sg~~i~~l-~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~  663 (711)
                      .+...+.+..+ .+|.+.|++++|+|=|.+|++|+.|.++++|.-....+.
T Consensus       335 ~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d~  385 (464)
T KOG0284|consen  335 VVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGDK  385 (464)
T ss_pred             eccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCCCCc
Confidence            99866665555 479999999999999999999999999999987665443

>KOG0291|consensus

Probab=100.00  E-value=1e-33  Score=306.12  Aligned_cols=320  Identities=23%  Similarity=0.399  Sum_probs=268.9

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCC-----------ceeeeccCccccccccccCC-cEEEEEecCCCeeE
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQ-----------KLKAMKSSDQLQDIEMECDD-ILVRIMDERNAETT  453 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~-----------~~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~  453 (711)
                      ....|+|++|++..++||+|...|...+|.+.+-           ++..+..+..+.++++++.. |.+.+|+..+..-+
T Consensus       264 ~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV  343 (893)
T KOG0291|consen  264 NSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV  343 (893)
T ss_pred             cccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecccee
Confidence            3378999999999999999999999999988553           34445566667888888754 78999999999999


Q ss_pred             EEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy14440        454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS  533 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~  533 (711)
                      -...||...+++++++|||+++++|+.||.|+|||..++-|..++..|++.|+.+.|+..|+.+++.+-||+||.||+..
T Consensus       344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR  423 (893)
T KOG0291|consen  344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR  423 (893)
T ss_pred             eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEeecC-CCCeeEEEEcCCCCEEEEEEcCC-cEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q psy14440        534 YHPLRLFVGH-YSDVDCVQFHPNSNYVATGSSDR-TIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVH  611 (711)
Q Consensus       534 ~~~~~~~~~h-~~~V~~v~~sp~~~~latgs~Dg-~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~  611 (711)
                      .+..++|... .....|++..|.|..+++|+.|. .|.||++++|+.+-.+.||.++|.+++|+++|..|++|+.|.+|+
T Consensus       424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVR  503 (893)
T KOG0291|consen  424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVR  503 (893)
T ss_pred             cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEE
Confidence            9999998753 34578999999999999999876 599999999999999999999999999999999999999999999


Q ss_pred             EEECCCCe-EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecc
Q psy14440        612 MWDLSNGH-LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYK  690 (711)
Q Consensus       612 iwDl~sg~-~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  690 (711)
                      +||+-... .+.++. +...+..++|+|+|+-||+++.||.|.+||.........-+........   ........+.-.
T Consensus       504 iW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~g---R~~~D~~ta~~s  579 (893)
T KOG0291|consen  504 IWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGG---RKETDRITAENS  579 (893)
T ss_pred             EEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccc---ccccceeehhhc
Confidence            99986543 333343 5677999999999999999999999999999875543221111111000   011222233344


Q ss_pred             cCCcceEEEEEccCCeeee
Q psy14440        691 TKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       691 t~~~pV~~v~Fs~~n~lla  709 (711)
                      .+..+...+.||.||.++.
T Consensus       580 a~~K~Ftti~ySaDG~~Il  598 (893)
T KOG0291|consen  580 AKGKTFTTICYSADGKCIL  598 (893)
T ss_pred             ccCCceEEEEEcCCCCEEE
Confidence            5566899999999998765

>KOG0279|consensus

Probab=100.00  E-value=4.4e-34  Score=278.43  Aligned_cols=248  Identities=27%  Similarity=0.447  Sum_probs=219.9

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      .....+.+|...|..++.++||++.++|+.|+++++||+.                               +++..+.|.
T Consensus        54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~-------------------------------~g~~t~~f~  102 (315)
T KOG0279|consen   54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA-------------------------------TGESTRRFV  102 (315)
T ss_pred             ceeeeeeccceEecceEEccCCceEEeccccceEEEEEec-------------------------------CCcEEEEEE
Confidence            3456789999999999999999999999999999999984                               456788999


Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC--CCCEEEEEEcCC--CCEEEEEECCCeEEEEECCC
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH--GHPVWDIKFSPH--GYYFASAGHDRMARLWATDS  533 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h--~~~V~~v~~sp~--g~~l~sgs~Dg~i~lwd~~~  533 (711)
                      ||...|.+++|++|++.+++||.|.+|++|++.. .+..+...+  ...|.|+.|+|+  ..+|+++|.|++|++||+++
T Consensus       103 GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~  181 (315)
T KOG0279|consen  103 GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN  181 (315)
T ss_pred             ecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence            9999999999999999999999999999999874 455544433  789999999997  67999999999999999999


Q ss_pred             CceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy14440        534 YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW  613 (711)
Q Consensus       534 ~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iw  613 (711)
                      .+....+.||.+.++.++++|||...++|+.||.+.+||++.++++..+. |...|.+++|+|+.-+|+.+.. ..|+||
T Consensus       182 ~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~-~sIkIw  259 (315)
T KOG0279|consen  182 CQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATA-TSIKIW  259 (315)
T ss_pred             cchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccC-CceEEE
Confidence            99999999999999999999999999999999999999999999987775 8899999999998877776654 569999


Q ss_pred             ECCCCeEEEEeeC----C-----CCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        614 DLSNGHLLTLLTG----H-----TDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       614 Dl~sg~~i~~l~~----h-----~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      |+.++.++..++-    .     .-...+++|+.||..|++|-.|+.|++|.+..
T Consensus       260 dl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  260 DLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             eccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence            9999988877642    2     22356889999999999999999999999864

>KOG0291|consensus

Probab=100.00  E-value=1.5e-33  Score=304.85  Aligned_cols=312  Identities=23%  Similarity=0.357  Sum_probs=258.0

Q ss_pred             CCceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-------------eeeccCccccccccccCCcE
Q psy14440        375 LPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKL-------------KAMKSSDQLQDIEMECDDIL  441 (711)
Q Consensus       375 lps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~-------------~~~~~~~~~~~l~~~~~d~~  441 (711)
                      .|-+...++.+|...|+++.||.|+++|++|+.|.+++||+++..+-             ....+..+...+.+.+.||.
T Consensus       133 ~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~  212 (893)
T KOG0291|consen  133 NPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGA  212 (893)
T ss_pred             CcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCce
Confidence            46677778999999999999999999999999999999998865431             11112222333344444444


Q ss_pred             EEEE----------------------------------------------------------------------------
Q psy14440        442 VRIM----------------------------------------------------------------------------  445 (711)
Q Consensus       442 i~i~----------------------------------------------------------------------------  445 (711)
                      +.+|                                                                            
T Consensus       213 l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Ly  292 (893)
T KOG0291|consen  213 LFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLY  292 (893)
T ss_pred             EEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEE
Confidence            4444                                                                            


Q ss_pred             ecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Q psy14440        446 DERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQD-NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDR  524 (711)
Q Consensus       446 d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~D-g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg  524 (711)
                      +......++.+.-...+|..++|+..|.+|+.|+.. |.+-||++++..-+...++|...+.+++++|||.++|+|+.||
T Consensus       293 elP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg  372 (893)
T KOG0291|consen  293 ELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG  372 (893)
T ss_pred             ecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC
Confidence            333344444444445678888999999999988764 8999999999999999999999999999999999999999999


Q ss_pred             eEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC-CCCeEEEEEecCCCEEEE
Q psy14440        525 MARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH-KAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       525 ~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h-~~~I~~la~spdg~~Las  603 (711)
                      .|+|||..++-++.+|..|.+.|+.++|+.+|+.+++.|-||+||.||+...++.|+|... .....|++..|.|..+++
T Consensus       373 KVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A  452 (893)
T KOG0291|consen  373 KVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA  452 (893)
T ss_pred             cEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe
Confidence            9999999999999999999999999999999999999999999999999999999999864 346788999999999999


Q ss_pred             EeCCC-cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccc
Q psy14440        604 AGGDG-NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSL  682 (711)
Q Consensus       604 gs~Dg-~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~  682 (711)
                      |+.|. .|+||++.+|+.+..+.||.++|.+++|+++|..|++||.|.+||+||+-......++                
T Consensus       453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt----------------  516 (893)
T KOG0291|consen  453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET----------------  516 (893)
T ss_pred             eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeee----------------
Confidence            99886 7999999999999999999999999999999999999999999999998653222111                


Q ss_pred             cceeeecccCCcceEEEEEccCCeeee
Q psy14440        683 AYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       683 ~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                            +. ..+-|..|+|.|+|.-||
T Consensus       517 ------l~-i~sdvl~vsfrPdG~ela  536 (893)
T KOG0291|consen  517 ------LE-IRSDVLAVSFRPDGKELA  536 (893)
T ss_pred             ------Ee-eccceeEEEEcCCCCeEE
Confidence                  11 345678888888888776

>KOG0266|consensus

Probab=100.00  E-value=7.2e-34  Score=317.30  Aligned_cols=278  Identities=33%  Similarity=0.528  Sum_probs=241.5

Q ss_pred             EEEEecC-CCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        380 CYTLLNA-RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       380 ~~tl~~h-~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      ..++.+| ...|+|+.|++||+++++++.++.|++|+..+.+.                             ...+.+.+
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----------------------------~~~~~l~~  201 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----------------------------NLLRELSG  201 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----------------------------hhhccccc
Confidence            4445454 78999999999999999999999999999843220                             23455688


Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL-LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl-~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      |...|.+++|+++++++++|+.|++|+|||+ ..+.+++++++|...|++++|+|+|+.+++|+.|++|++||+++++++
T Consensus       202 h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~  281 (456)
T KOG0266|consen  202 HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECV  281 (456)
T ss_pred             cccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEE
Confidence            9999999999999999999999999999999 666999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc--EEEEeeCCCCC--eEEEEEecCCCEEEEEeCCCcEEEE
Q psy14440        538 RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS--HVRLLTGHKAP--VYALSFSVCGRFLASAGGDGNVHMW  613 (711)
Q Consensus       538 ~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~--~v~~~~~h~~~--I~~la~spdg~~Lasgs~Dg~I~iw  613 (711)
                      +.+.+|...|++++|++++++|++++.|+.|+|||+.++.  ++..+.++...  +++++|+|+|++|++++.|+.+++|
T Consensus       282 ~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w  361 (456)
T KOG0266|consen  282 RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLW  361 (456)
T ss_pred             EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence            9999999999999999999999999999999999999999  67788777665  9999999999999999999999999


Q ss_pred             ECCCCeEEEEeeCCCCC---EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecc
Q psy14440        614 DLSNGHLLTLLTGHTDV---VRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYK  690 (711)
Q Consensus       614 Dl~sg~~i~~l~~h~~~---V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  690 (711)
                      |+..++.+..+.+|...   +.+...++.|.++++|+.|+.|++||+.+...                       +..+.
T Consensus       362 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~-----------------------~~~l~  418 (456)
T KOG0266|consen  362 DLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI-----------------------LQRLE  418 (456)
T ss_pred             EccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch-----------------------hhhhc
Confidence            99999999999999864   44555677899999999999999999976221                       22344


Q ss_pred             cC-CcceEEEEEccCCeeee
Q psy14440        691 TK-ASPLLHLIFSRRNILLR  709 (711)
Q Consensus       691 t~-~~pV~~v~Fs~~n~lla  709 (711)
                      .| ...|..+.|++...+++
T Consensus       419 ~h~~~~~~~~~~~~~~~~~~  438 (456)
T KOG0266|consen  419 GHSKAAVSDLSSHPTENLIA  438 (456)
T ss_pred             CCCCCceeccccCCCcCeee
Confidence            44 55666666666665555

>KOG0281|consensus

Probab=100.00  E-value=3.4e-36  Score=299.60  Aligned_cols=262  Identities=28%  Similarity=0.553  Sum_probs=231.1

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEE
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRK  465 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~  465 (711)
                      ...+|.|+.+..  ..+++|..|.+|+|||..                               +....+.+.||+|.|.|
T Consensus       196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n-------------------------------~~~c~~~L~GHtGSVLC  242 (499)
T KOG0281|consen  196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKN-------------------------------SLECLKILTGHTGSVLC  242 (499)
T ss_pred             cCCceEEEEecc--hhhhcccccCceEEeccc-------------------------------cHHHHHhhhcCCCcEEe
Confidence            457899999865  478999999999999974                               34456778999999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc---eeEEeec
Q psy14440        466 LSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH---PLRLFVG  542 (711)
Q Consensus       466 l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~---~~~~~~~  542 (711)
                      +.|  +.+.|++||.|.+|++||+++++++.++-+|...|..+.|+  ..++++++.|.++.+||+....   ..+.+.|
T Consensus       243 Lqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG  318 (499)
T KOG0281|consen  243 LQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVG  318 (499)
T ss_pred             eec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhh
Confidence            999  56799999999999999999999999999999999999998  4599999999999999998654   3456789


Q ss_pred             CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy14440        543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLT  622 (711)
Q Consensus       543 h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~  622 (711)
                      |...|+.+.|+  .+|++++|.|.+|++|++.++.+++++.||+..|.|+.+.  |+++++|+.|.+|++||+..|.++.
T Consensus       319 HrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLR  394 (499)
T KOG0281|consen  319 HRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR  394 (499)
T ss_pred             hhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHH
Confidence            99999999996  5699999999999999999999999999999999999875  9999999999999999999999999


Q ss_pred             EeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEc
Q psy14440        623 LLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFS  702 (711)
Q Consensus       623 ~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs  702 (711)
                      .+.||..-|.++.|.  .+.+++|+.||+|+|||+........              .....++.+...|++.|+.++|-
T Consensus       395 vLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra--------------~~~~~Cl~~lv~hsgRVFrLQFD  458 (499)
T KOG0281|consen  395 VLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRA--------------PASTLCLRTLVEHSGRVFRLQFD  458 (499)
T ss_pred             HHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcc--------------cccchHHHhhhhccceeEEEeec
Confidence            999999999999995  77899999999999999987554322              23456777788888899999986


Q ss_pred             cC
Q psy14440        703 RR  704 (711)
Q Consensus       703 ~~  704 (711)
                      ..
T Consensus       459 ~f  460 (499)
T KOG0281|consen  459 EF  460 (499)
T ss_pred             ce
Confidence            43

>KOG0285|consensus

Probab=100.00  E-value=4.5e-34  Score=285.85  Aligned_cols=255  Identities=29%  Similarity=0.510  Sum_probs=237.9

Q ss_pred             ceEEEE-EecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEE
Q psy14440        377 SIACYT-LLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRT  455 (711)
Q Consensus       377 s~~~~t-l~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  455 (711)
                      .+.+|. +.+|.+-|.|+++.|.+.+||+|+.|++|+|||+.+                               ++...+
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-------------------------------g~Lklt  188 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-------------------------------GQLKLT  188 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc-------------------------------CeEEEe
Confidence            445554 788999999999999999999999999999999854                               455668


Q ss_pred             eecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q psy14440        456 LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH  535 (711)
Q Consensus       456 l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~  535 (711)
                      +.||...|..+++|+-..||++|+.|+.|+.||++..+.++.|.||-+.|.|++.+|.-..+++|+.|.++|+||+++..
T Consensus       189 ltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~  268 (460)
T KOG0285|consen  189 LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA  268 (460)
T ss_pred             ecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q psy14440        536 PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       536 ~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl  615 (711)
                      .+..+.||...|..+.+.|..-.+++||.|++|++||++.|+...++..|+..|.+++.+|....+|+++.| .|+-|++
T Consensus       269 ~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~  347 (460)
T KOG0285|consen  269 SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKL  347 (460)
T ss_pred             eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccC
Confidence            999999999999999999988899999999999999999999999999999999999999999999999887 6999999


Q ss_pred             CCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q psy14440        616 SNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEV  664 (711)
Q Consensus       616 ~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  664 (711)
                      ..|..+..+.+|++.|++++.+.|| ++++|+..|.+.+||.+...+-.
T Consensus       348 p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ  395 (460)
T KOG0285|consen  348 PEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQ  395 (460)
T ss_pred             CccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccc
Confidence            9999999999999999999998765 78899999999999998866543

>KOG0263|consensus

Probab=100.00  E-value=1.1e-34  Score=317.10  Aligned_cols=239  Identities=34%  Similarity=0.546  Sum_probs=216.8

Q ss_pred             ceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        377 SIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       377 s~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      +....++.+|.+.|..+.|+||.++|++++.|++||+|++.                               +......+
T Consensus       441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~-------------------------------t~s~~V~y  489 (707)
T KOG0263|consen  441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLD-------------------------------TWSCLVIY  489 (707)
T ss_pred             CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecc-------------------------------cceeEEEe
Confidence            34566799999999999999999999999999999999985                               44556678


Q ss_pred             ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP  536 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~  536 (711)
                      .||..+|+.+.|+|-|-++||||.|++-++|+......++.+.+|.+.|.|+.|+|+.+|+++||.|++||+||+.++..
T Consensus       490 ~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~  569 (707)
T KOG0263|consen  490 KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS  569 (707)
T ss_pred             cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy14440        537 LRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS  616 (711)
Q Consensus       537 ~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~  616 (711)
                      +|.|.||.++|.+++|+|+|+||++|+.||.|.+||+.+|+.+..+.+|++.|+++.||.+|..||+||.|++|++||+.
T Consensus       570 VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  570 VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999985


Q ss_pred             CCe------------------------EEEEeeCCCCCEEEEEEeCCCCEEEEE
Q psy14440        617 NGH------------------------LLTLLTGHTDVVRALCFSRDGNILASS  646 (711)
Q Consensus       617 sg~------------------------~i~~l~~h~~~V~sl~fspdg~~Lasg  646 (711)
                      .-.                        .+..+.....+|.+|.|......|+.|
T Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  650 KVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             hhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence            422                        334444445567788887665444444

>KOG0293|consensus

Probab=100.00  E-value=2e-33  Score=285.74  Aligned_cols=260  Identities=27%  Similarity=0.466  Sum_probs=214.6

Q ss_pred             CCCCCceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCe
Q psy14440        372 PESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAE  451 (711)
Q Consensus       372 ~~~lps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  451 (711)
                      +..+|+-....+..|.+.|+-+.||++|++||+++.|.+..+|.+..                           |. ..+
T Consensus       209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~---------------------------d~-~~k  260 (519)
T KOG0293|consen  209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY---------------------------DV-HFK  260 (519)
T ss_pred             cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec---------------------------Cc-cee
Confidence            44578777788999999999999999999999999999999999742                           21 245


Q ss_pred             eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q psy14440        452 TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK-GHGHPVWDIKFSPHGYYFASAGHDRMARLWA  530 (711)
Q Consensus       452 ~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~-~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd  530 (711)
                      ..+++.+|..+|..+.||||.++|++|+.|..+++||+.++.+...|. +|...+.+++|.|||..|++|+.|+++..||
T Consensus       261 l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wd  340 (519)
T KOG0293|consen  261 LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWD  340 (519)
T ss_pred             eeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEec
Confidence            678999999999999999999999999999999999999999998885 3468899999999999999999999999999


Q ss_pred             CCCCceeEEeecC-CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC---------------------------------
Q psy14440        531 TDSYHPLRLFVGH-YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG---------------------------------  576 (711)
Q Consensus       531 ~~~~~~~~~~~~h-~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~---------------------------------  576 (711)
                      ++... +....+- ...|.+++.++||+++++.+.|..|++|+..+.                                 
T Consensus       341 lDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei  419 (519)
T KOG0293|consen  341 LDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEI  419 (519)
T ss_pred             CCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCee
Confidence            98543 3334332 245899999999999998888877777665433                                 


Q ss_pred             --------cEEEEeeCCCCC--eEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCC-CCEEE
Q psy14440        577 --------SHVRLLTGHKAP--VYALSFSV-CGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRD-GNILA  644 (711)
Q Consensus       577 --------~~v~~~~~h~~~--I~~la~sp-dg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspd-g~~La  644 (711)
                              +.++.+.||+..  +-.-||-- +..++++|++|+.|+||+..+|+++.++.||...|++++|+|. -.++|
T Consensus       420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~A  499 (519)
T KOG0293|consen  420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFA  499 (519)
T ss_pred             EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhh
Confidence                    333334455433  22223332 3367999999999999999999999999999999999999994 56899


Q ss_pred             EEeCCCcEEEEeCCCC
Q psy14440        645 SSGQDCSVKLWDFAKL  660 (711)
Q Consensus       645 sgs~Dg~V~iWdl~~~  660 (711)
                      +||.||+||||-....
T Consensus       500 SasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  500 SASDDGTIRIWGPSDN  515 (519)
T ss_pred             ccCCCCeEEEecCCcc
Confidence            9999999999987653

>KOG0265|consensus

Probab=100.00  E-value=1.1e-33  Score=278.04  Aligned_cols=276  Identities=25%  Similarity=0.392  Sum_probs=244.8

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      +..+.+|.+.|+++.|+|+|.+||+|+.|..|.+|++.+                              ..+....+.+|
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g------------------------------dceN~~~lkgH   89 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG------------------------------DCENFWVLKGH   89 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc------------------------------cccceeeeccc
Confidence            345789999999999999999999999999999999753                              22345567799


Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceeE
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSYHPLR  538 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g-~~l~sgs~Dg~i~lwd~~~~~~~~  538 (711)
                      +++|..+.|..|++.|++||.|.+|+.||+++++++..+++|...|..+.-+.-| ..+.+|+.||++++||+++..+++
T Consensus        90 sgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~  169 (338)
T KOG0265|consen   90 SGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK  169 (338)
T ss_pred             cceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh
Confidence            9999999999999999999999999999999999999999999999999855545 467788999999999999988888


Q ss_pred             EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-
Q psy14440        539 LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN-  617 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s-  617 (711)
                      ++. ....++++.|...+..+.+|+-|+.|++||++.+....++.||...|+.+..+++|.++.+-+.|++|++||++- 
T Consensus       170 t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~  248 (338)
T KOG0265|consen  170 TFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF  248 (338)
T ss_pred             ccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence            775 356799999999999999999999999999999999999999999999999999999999999999999999874 


Q ss_pred             ---CeEEEEeeCCC----CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecc
Q psy14440        618 ---GHLLTLLTGHT----DVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYK  690 (711)
Q Consensus       618 ---g~~i~~l~~h~----~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  690 (711)
                         .+++..+.+|.    .....++|+|+++.+.+|+.|..|++||...                       ...+..++
T Consensus       249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~-----------------------r~~lyklp  305 (338)
T KOG0265|consen  249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS-----------------------RRILYKLP  305 (338)
T ss_pred             CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc-----------------------ccEEEEcC
Confidence               45688888764    2355779999999999999999999999753                       45566799


Q ss_pred             cCCcceEEEEEccCCeeee
Q psy14440        691 TKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       691 t~~~pV~~v~Fs~~n~lla  709 (711)
                      +|...|.+++|.|...+|.
T Consensus       306 Gh~gsvn~~~Fhp~e~iil  324 (338)
T KOG0265|consen  306 GHYGSVNEVDFHPTEPIIL  324 (338)
T ss_pred             CcceeEEEeeecCCCcEEE
Confidence            9999999999999876654

>KOG0318|consensus

Probab=100.00  E-value=8.5e-33  Score=288.85  Aligned_cols=307  Identities=21%  Similarity=0.345  Sum_probs=251.2

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-------------eeeeccCcccc-----------------
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-------------LKAMKSSDQLQ-----------------  431 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-------------~~~~~~~~~~~-----------------  431 (711)
                      ...+|...++-+.|||.|.++|+|...|.||||+.....             ++.+.+..+..                 
T Consensus        54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~  133 (603)
T KOG0318|consen   54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL  133 (603)
T ss_pred             eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence            345678889999999999999999999999999986521             11222222222                 


Q ss_pred             ----------------------------ccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCe
Q psy14440        432 ----------------------------DIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNT  483 (711)
Q Consensus       432 ----------------------------~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~  483 (711)
                                                  .++.+++|+.+.+|+-.-.+...+++.|+.-|+|+.|+|||.++++++.||+
T Consensus       134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk  213 (603)
T KOG0318|consen  134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK  213 (603)
T ss_pred             ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence                                        2445666777777776666677788889999999999999999999999999


Q ss_pred             EEEEECCCCeEEEEEe---cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee-----------------------
Q psy14440        484 IRLWSLLLWRCLVVYK---GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL-----------------------  537 (711)
Q Consensus       484 V~iwdl~t~~~~~~~~---~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~-----------------------  537 (711)
                      |.+||=.+++.+..+.   +|.+.|.+++|+||+..|++++.|.+++|||+.+.+.+                       
T Consensus       214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l  293 (603)
T KOG0318|consen  214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL  293 (603)
T ss_pred             EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence            9999999999999998   89999999999999999999999999999998764432                       


Q ss_pred             --------------------EEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE----------------
Q psy14440        538 --------------------RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRL----------------  581 (711)
Q Consensus       538 --------------------~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~----------------  581 (711)
                                          +.+.||...|+++..++++.+|++|+.||.|.-||..+|..-+.                
T Consensus       294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~  373 (603)
T KOG0318|consen  294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE  373 (603)
T ss_pred             EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence                                33448999999999999999999999999999999865532211                


Q ss_pred             ---------------e------------------------------------------eCC--------CCCeEEEEEec
Q psy14440        582 ---------------L------------------------------------------TGH--------KAPVYALSFSV  596 (711)
Q Consensus       582 ---------------~------------------------------------------~~h--------~~~I~~la~sp  596 (711)
                                     +                                          ..+        .-...+++++|
T Consensus       374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~  453 (603)
T KOG0318|consen  374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP  453 (603)
T ss_pred             CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence                           0                                          000        11345678899


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeE--EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccc
Q psy14440        597 CGRFLASAGGDGNVHMWDLSNGHL--LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHS  674 (711)
Q Consensus       597 dg~~Lasgs~Dg~I~iwDl~sg~~--i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~  674 (711)
                      ++..+++|+.||.|+||.+..+..  ...+..|.+.|+.+++|||+.+||+|...+.|.+||+.+...            
T Consensus       454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~------------  521 (603)
T KOG0318|consen  454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV------------  521 (603)
T ss_pred             CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce------------
Confidence            999999999999999999987654  334567999999999999999999999999999999976321            


Q ss_pred             cccccccccceeeecccCCcceEEEEEccCCeeee-C
Q psy14440        675 ADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR-G  710 (711)
Q Consensus       675 ~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-G  710 (711)
                                ....|.-|...|.+|+|+|+|+++| |
T Consensus       522 ----------~~~~w~FHtakI~~~aWsP~n~~vATG  548 (603)
T KOG0318|consen  522 ----------KTNRWAFHTAKINCVAWSPNNKLVATG  548 (603)
T ss_pred             ----------ecceeeeeeeeEEEEEeCCCceEEEec
Confidence                      2234777899999999999999999 7

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1e-32  Score=329.50  Aligned_cols=273  Identities=19%  Similarity=0.315  Sum_probs=236.2

Q ss_pred             EecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc------------------eeeeccCc-cccccccccCCcEEE
Q psy14440        383 LLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK------------------LKAMKSSD-QLQDIEMECDDILVR  443 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~------------------~~~~~~~~-~~~~l~~~~~d~~i~  443 (711)
                      +.+|.+.|++++|+++|++||+|+.|+.|+||++....                  +..+.+.. ....++.++.++.|+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            56699999999999999999999999999999975310                  11112221 245677888899999


Q ss_pred             EEecCCCeeEEEeecccCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEc-CCCCEEEEEE
Q psy14440        444 IMDERNAETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFS-PHGYYFASAG  521 (711)
Q Consensus       444 i~d~~~~~~~~~l~~h~~~V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~s-p~g~~l~sgs  521 (711)
                      +||..+++.+..+.+|.+.|++++|++ ++.+|++|+.||+|++||+.++.++..+..+ ..|.++.|+ ++|.+|++|+
T Consensus       559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs  637 (793)
T PLN00181        559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGS  637 (793)
T ss_pred             EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEe
Confidence            999999999999999999999999996 7889999999999999999999998888754 679999995 5799999999


Q ss_pred             CCCeEEEEECCCCc-eeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC------CcEEEEeeCCCCCeEEEEE
Q psy14440        522 HDRMARLWATDSYH-PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT------GSHVRLLTGHKAPVYALSF  594 (711)
Q Consensus       522 ~Dg~i~lwd~~~~~-~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~------~~~v~~~~~h~~~I~~la~  594 (711)
                      .||+|++||+++.+ ++..+.+|...|.++.|. ++.+|++++.|++|++||++.      +..++.+.+|...+++++|
T Consensus       638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~  716 (793)
T PLN00181        638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL  716 (793)
T ss_pred             CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE
Confidence            99999999998765 567788999999999997 788999999999999999974      3578889999999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEECCCCeEEEEe-------------eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        595 SVCGRFLASAGGDGNVHMWDLSNGHLLTLL-------------TGHTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       595 spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l-------------~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      ++++.+|++|+.||.|++|+...+..+..+             ..|...|.+++|++++..|++|+.||+|+||++
T Consensus       717 s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        717 SVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             cCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            999999999999999999998766443322             234567999999999999999999999999996

>KOG0645|consensus

Probab=100.00  E-value=2.7e-32  Score=264.87  Aligned_cols=282  Identities=24%  Similarity=0.398  Sum_probs=234.3

Q ss_pred             eEEEEEecCCCceEEEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        378 IACYTLLNARQQVTCAEISED-VSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~d-g~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      +...++.+|.+.|..++|+|- |.+||+|+.|..||||+..+..                            +......+
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~----------------------------s~~ck~vl   56 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD----------------------------SWTCKTVL   56 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC----------------------------cEEEEEec
Confidence            346678999999999999998 9999999999999999986311                            11111122


Q ss_pred             -ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy14440        457 -VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL--LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS  533 (711)
Q Consensus       457 -~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~--t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~  533 (711)
                       .+|+..|.+++|+|.|++|+++|.|+++.||.-.  .++++.++.||...|.|++|+.+|+|||++++|+.|-+|.++.
T Consensus        57 d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de  136 (312)
T KOG0645|consen   57 DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE  136 (312)
T ss_pred             cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC
Confidence             3799999999999999999999999999999864  5689999999999999999999999999999999999999874


Q ss_pred             C---ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC---CCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC
Q psy14440        534 Y---HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV---TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       534 ~---~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~---~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D  607 (711)
                      .   .+...+..|..+|..+.|||....|+++|.|.+|++|+-.   ...++.++.+|...|.+++|++.|..|++++.|
T Consensus       137 ddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD  216 (312)
T KOG0645|consen  137 DDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD  216 (312)
T ss_pred             CCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC
Confidence            3   5678889999999999999999999999999999999866   346899999999999999999999999999999


Q ss_pred             CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceee
Q psy14440        608 GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVR  687 (711)
Q Consensus       608 g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  687 (711)
                      ++|+||-..+.-    -..|...++.+.|.  ...|++++.|+.|++|.-.......                .-..+..
T Consensus       217 ~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p----------------~~~l~~~  274 (312)
T KOG0645|consen  217 GTVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEP----------------SWNLLAK  274 (312)
T ss_pred             cceEeeeeccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCc----------------hHHHHHh
Confidence            999999865221    12477889999998  5689999999999999765211110                1111222


Q ss_pred             ecccCCcceEEEEEcc--CCeeee
Q psy14440        688 SYKTKASPLLHLIFSR--RNILLR  709 (711)
Q Consensus       688 ~~~t~~~pV~~v~Fs~--~n~lla  709 (711)
                      .-..|...|++|+|.|  +|+++.
T Consensus       275 ~~~aHe~dVNsV~w~p~~~~~L~s  298 (312)
T KOG0645|consen  275 KEGAHEVDVNSVQWNPKVSNRLAS  298 (312)
T ss_pred             hhcccccccceEEEcCCCCCceee
Confidence            2344667999999999  677766

>KOG0282|consensus

Probab=100.00  E-value=2.7e-34  Score=298.03  Aligned_cols=252  Identities=25%  Similarity=0.421  Sum_probs=228.2

Q ss_pred             CCCceEEEEEecCCCceEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCee
Q psy14440        374 SLPSIACYTLLNARQQVTCAEISE-DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAET  452 (711)
Q Consensus       374 ~lps~~~~tl~~h~~~V~~l~fs~-dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  452 (711)
                      -+|.-..+++.+|..+|+++.|.| .+.+|++|+.|+.|+||++-                            +  .+.+
T Consensus       201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy----------------------------~--~~~~  250 (503)
T KOG0282|consen  201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY----------------------------D--DRRC  250 (503)
T ss_pred             eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEe----------------------------c--Ccce
Confidence            467888899999999999999999 88999999999999999973                            2  5678


Q ss_pred             EEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCC-CEEEEEECCCeEEEEEC
Q psy14440        453 TRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWAT  531 (711)
Q Consensus       453 ~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g-~~l~sgs~Dg~i~lwd~  531 (711)
                      ++++.||..+|.+++|+.+|..++|+|.|+.|++||+++|+++..+. ....++|+.|+|++ +.|++|+.|+.|+.||+
T Consensus       251 lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi  329 (503)
T KOG0282|consen  251 LRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI  329 (503)
T ss_pred             ehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence            89999999999999999999999999999999999999999999997 46788999999988 89999999999999999


Q ss_pred             CCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE-------------------------------
Q psy14440        532 DSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR-------------------------------  580 (711)
Q Consensus       532 ~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~-------------------------------  580 (711)
                      ++++.++.+..|.+.|..+.|-++|+++++.++|++++||+.+....+.                               
T Consensus       330 Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i  409 (503)
T KOG0282|consen  330 RSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYI  409 (503)
T ss_pred             cchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceE
Confidence            9999999999999999999999999999999999999999976432111                               


Q ss_pred             ---------------EeeCCCC--CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCC-CCE
Q psy14440        581 ---------------LLTGHKA--PVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRD-GNI  642 (711)
Q Consensus       581 ---------------~~~~h~~--~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspd-g~~  642 (711)
                                     .|.||..  .-..+.|||||++|++|+.||.+.+||.++-+++..+++|.+.+..+.|+|. ...
T Consensus       410 ~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Sk  489 (503)
T KOG0282|consen  410 AIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSK  489 (503)
T ss_pred             EEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcce
Confidence                           1345543  3456789999999999999999999999999999999999999999999995 458


Q ss_pred             EEEEeCCCcEEEEe
Q psy14440        643 LASSGQDCSVKLWD  656 (711)
Q Consensus       643 Lasgs~Dg~V~iWd  656 (711)
                      +|+||.||.|++||
T Consensus       490 vat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  490 VATCGWDGLIKIWD  503 (503)
T ss_pred             eEecccCceeEecC
Confidence            99999999999997

>KOG0316|consensus

Probab=100.00  E-value=8.2e-33  Score=263.27  Aligned_cols=273  Identities=22%  Similarity=0.356  Sum_probs=242.0

Q ss_pred             CCCceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeE
Q psy14440        374 SLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETT  453 (711)
Q Consensus       374 ~lps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  453 (711)
                      .+|.....++..|.+.|.++.|+-||++.++++.|.+|++|+.                               ..+..+
T Consensus         4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp-------------------------------~rg~li   52 (307)
T KOG0316|consen    4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNP-------------------------------LRGALI   52 (307)
T ss_pred             cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecc-------------------------------ccccee
Confidence            3566777888999999999999999999999999999999986                               356778


Q ss_pred             EEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy14440        454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS  533 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~  533 (711)
                      +++.+|...|..++.+.|+..+++|+.|..|.+||+.+|+.++.+++|...|+.++|+.+...+++|+.|.++++||.++
T Consensus        53 ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS  132 (307)
T KOG0316|consen   53 KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS  132 (307)
T ss_pred             eeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             C--ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q psy14440        534 Y--HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVH  611 (711)
Q Consensus       534 ~--~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~  611 (711)
                      .  ++++++......|.+|...  +..|++||.||++|.||++.|+...-+.+  .+|+|++|++||+...+++.|++|+
T Consensus       133 ~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlr  208 (307)
T KOG0316|consen  133 RSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLR  208 (307)
T ss_pred             CCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceee
Confidence            4  6888998888899999885  67899999999999999999987766655  5799999999999999999999999


Q ss_pred             EEECCCCeEEEEeeCCCCCEE--EEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeec
Q psy14440        612 MWDLSNGHLLTLLTGHTDVVR--ALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSY  689 (711)
Q Consensus       612 iwDl~sg~~i~~l~~h~~~V~--sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  689 (711)
                      +.|-.+|++++.++||.+.-+  ..+++.....+++|++||.|.+||+....                       .+..+
T Consensus       209 LlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~-----------------------~~sk~  265 (307)
T KOG0316|consen  209 LLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET-----------------------QISKL  265 (307)
T ss_pred             ecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce-----------------------eeeee
Confidence            999999999999999986433  45677778899999999999999997532                       33445


Q ss_pred             ccCCcc-eEEEEEccC
Q psy14440        690 KTKASP-LLHLIFSRR  704 (711)
Q Consensus       690 ~t~~~p-V~~v~Fs~~  704 (711)
                      ..+..+ |.+|.|.|.
T Consensus       266 ~~~~~v~v~dl~~hp~  281 (307)
T KOG0316|consen  266 SVVSTVIVTDLSCHPT  281 (307)
T ss_pred             ccCCceeEEeeecccC
Confidence            555665 677777764

>KOG0295|consensus

Probab=100.00  E-value=1.3e-33  Score=283.81  Aligned_cols=261  Identities=26%  Similarity=0.480  Sum_probs=237.0

Q ss_pred             cCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEEecCCCC
Q psy14440        426 SSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL-WRCLVVYKGHGHP  504 (711)
Q Consensus       426 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t-~~~~~~~~~h~~~  504 (711)
                      .++....++.+++++.|++||..+++..+.++||...|..++|+..|++|++|+.|-.+.+||..+ .+++....+|...
T Consensus       116 ~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~  195 (406)
T KOG0295|consen  116 FHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHG  195 (406)
T ss_pred             eccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccc
Confidence            345555667788999999999999999999999999999999999999999999999999999976 7788889999999


Q ss_pred             EEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC
Q psy14440        505 VWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG  584 (711)
Q Consensus       505 V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~  584 (711)
                      |.+++|-|.|.++++++.|.+|+.|+++++.++.+|.+|...|..++.+.||..+|+++.|.+|++|-+.+++|...+..
T Consensus       196 vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~  275 (406)
T KOG0295|consen  196 VSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELRE  275 (406)
T ss_pred             eeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecC---------------CCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC
Q psy14440        585 HKAPVYALSFSVC---------------GRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQD  649 (711)
Q Consensus       585 h~~~I~~la~spd---------------g~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D  649 (711)
                      |..+|.|++|.|.               |.++++++.|++|++||+.+|.++.++.+|.+.|.+++|+|.|+||+|+..|
T Consensus       276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD  355 (406)
T KOG0295|consen  276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADD  355 (406)
T ss_pred             cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecC
Confidence            9999999999763               3599999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        650 CSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       650 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      +++++||+++...                       +.++..|..=|.++.|-.+-.++.
T Consensus       356 ktlrvwdl~~~~c-----------------------mk~~~ah~hfvt~lDfh~~~p~Vv  392 (406)
T KOG0295|consen  356 KTLRVWDLKNLQC-----------------------MKTLEAHEHFVTSLDFHKTAPYVV  392 (406)
T ss_pred             CcEEEEEecccee-----------------------eeccCCCcceeEEEecCCCCceEE
Confidence            9999999987443                       334445555566666666555554

>KOG0284|consensus

Probab=100.00  E-value=4.1e-34  Score=290.77  Aligned_cols=266  Identities=22%  Similarity=0.398  Sum_probs=236.7

Q ss_pred             eeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-C
Q psy14440        423 AMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG-H  501 (711)
Q Consensus       423 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~-h  501 (711)
                      .+.+.+++..|.+++..|...+|+..+......+..|..+|.++.|+++|.+++||+.+|.|++|+..-. .+..+.+ |
T Consensus       101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh  179 (464)
T KOG0284|consen  101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHH  179 (464)
T ss_pred             eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhh
Confidence            3556677788999999999999998766666677899999999999999999999999999999998643 4444444 4


Q ss_pred             CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE
Q psy14440        502 GHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRL  581 (711)
Q Consensus       502 ~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~  581 (711)
                      ...|.+++|+|+...|++++.||+|+|||....+..+.+.||.-+|.|+.|||....||+|+.|..|++||.++|+|+.+
T Consensus       180 ~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t  259 (464)
T KOG0284|consen  180 AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT  259 (464)
T ss_pred             hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCC
Q psy14440        582 LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSR-DGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       582 ~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fsp-dg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      +.+|+..|..+.|++++++|+++|.|..+++||+++-+.+.++++|...|+++.|+| ...+|++||.||.|..|.+...
T Consensus       260 lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~  339 (464)
T KOG0284|consen  260 LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE  339 (464)
T ss_pred             hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccc
Confidence            999999999999999999999999999999999998889999999999999999999 5678999999999999998731


Q ss_pred             CCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee-CC
Q psy14440        661 SDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR-GP  711 (711)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-Ga  711 (711)
                      ...                      ..--..|...|.+++|.|=|-+|| |.
T Consensus       340 ~p~----------------------~~i~~AHd~~iwsl~~hPlGhil~tgs  369 (464)
T KOG0284|consen  340 EPL----------------------GEIPPAHDGEIWSLAYHPLGHILATGS  369 (464)
T ss_pred             ccc----------------------cCCCcccccceeeeeccccceeEeecC
Confidence            111                      111334778899999999999998 74

>KOG0319|consensus

Probab=100.00  E-value=1.1e-32  Score=298.27  Aligned_cols=253  Identities=27%  Similarity=0.437  Sum_probs=218.1

Q ss_pred             cccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eEEEEEecCCCCEEEE
Q psy14440        433 IEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW----RCLVVYKGHGHPVWDI  508 (711)
Q Consensus       433 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~----~~~~~~~~h~~~V~~v  508 (711)
                      ++++++...+++++..+.... .+.||+..|.+++...+|-+|+|||.|+++++|.++.+    .++....+|.+.|.++
T Consensus       339 laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgav  417 (775)
T KOG0319|consen  339 LAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAV  417 (775)
T ss_pred             EEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccccccee
Confidence            334445555666655544443 77899999999996668889999999999999977433    3556778999999999


Q ss_pred             EEcCCC-CEEEEEECCCeEEEEECCCCce-----e----EEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE
Q psy14440        509 KFSPHG-YYFASAGHDRMARLWATDSYHP-----L----RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH  578 (711)
Q Consensus       509 ~~sp~g-~~l~sgs~Dg~i~lwd~~~~~~-----~----~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~  578 (711)
                      +++..+ .+|+++|.|+++++|++...+.     +    .+...|..+|+|++++||...+||||.|++.+||++..+..
T Consensus       418 a~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l  497 (775)
T KOG0319|consen  418 AGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRL  497 (775)
T ss_pred             eecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceE
Confidence            997754 5899999999999999876221     1    12346999999999999999999999999999999999999


Q ss_pred             EEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        579 VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       579 v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      ..++.||+..|.|+.|++..+.++|+|.|++|+||.+.+..+++++.||+..|....|-.+|+.|+||+.||-|++|+++
T Consensus       498 ~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  498 LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK  577 (775)
T ss_pred             EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        659 KLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      +                       ..++.++..|...|.+++-+++...++
T Consensus       578 t-----------------------~eC~~tlD~H~DrvWaL~~~~~~~~~~  605 (775)
T KOG0319|consen  578 T-----------------------NECEMTLDAHNDRVWALSVSPLLDMFV  605 (775)
T ss_pred             c-----------------------hhhhhhhhhccceeEEEeecCccceeE
Confidence            5                       456677888999999999998877555

>KOG0276|consensus

Probab=100.00  E-value=1.8e-32  Score=290.82  Aligned_cols=272  Identities=26%  Similarity=0.454  Sum_probs=249.3

Q ss_pred             EecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-----------eeeccCccccccccccCCcEEEEEecCCCe
Q psy14440        383 LLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKL-----------KAMKSSDQLQDIEMECDDILVRIMDERNAE  451 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~-----------~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  451 (711)
                      +..+...|.|+.|+|...+++++-.+|.|.||+.++..+           ++.++-...+.++++++|..|++++.++++
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e   88 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE   88 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce
Confidence            455778999999999999999999999999999987653           223344556788999999999999999999


Q ss_pred             eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCeEEEE
Q psy14440        452 TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL-LWRCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMARLW  529 (711)
Q Consensus       452 ~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~-t~~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lw  529 (711)
                      .++.+..|..-|.+++.+|...+++|+|.|-+|++||.+ .|.|..++.||...|.+++|+| |.+.|++++-|++|++|
T Consensus        89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW  168 (794)
T KOG0276|consen   89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW  168 (794)
T ss_pred             eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence            999999999999999999999999999999999999996 5789999999999999999999 67899999999999999


Q ss_pred             ECCCCceeEEeecCCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC
Q psy14440        530 ATDSYHPLRLFVGHYSDVDCVQFHPN--SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       530 d~~~~~~~~~~~~h~~~V~~v~~sp~--~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D  607 (711)
                      .+.+..+..++.+|...|+||++-+-  .-||++|++|.+|+|||.++..|++++.||...|++++|+|.-..+++|++|
T Consensus       169 slgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED  248 (794)
T KOG0276|consen  169 SLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSED  248 (794)
T ss_pred             EcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCC
Confidence            99999999999999999999999874  4699999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEE
Q psy14440        608 GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKL  654 (711)
Q Consensus       608 g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~i  654 (711)
                      |+|+||+..+-+....+.-..+.|++++-.+.++.++.|...|.|.|
T Consensus       249 GTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  249 GTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             ccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            99999999999988888877889999999888888888887776643

>KOG0275|consensus

Probab=100.00  E-value=4.3e-32  Score=268.04  Aligned_cols=272  Identities=25%  Similarity=0.384  Sum_probs=246.4

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee-------------------eeccCccccccccccCCcEEEE
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLK-------------------AMKSSDQLQDIEMECDDILVRI  444 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~-------------------~~~~~~~~~~l~~~~~d~~i~i  444 (711)
                      ++....+-|..|||||++|++|+.||.|.||+..+++++                   ++.++-+...++.++.||.|.+
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            345567889999999999999999999999999887643                   3556667778899999999999


Q ss_pred             EecCCCeeEEEee-cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC
Q psy14440        445 MDERNAETTRTLV-GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD  523 (711)
Q Consensus       445 ~d~~~~~~~~~l~-~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D  523 (711)
                      |...++.+++.+. .|+..|+|+.||.|+..+++++.|.++|+.-+.+|+++..++||.+.|+.+.|+++|+++++++.|
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence            9999999999987 899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEECCCCceeEEeec--CCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEeeC---CCCCeEEEEEecC
Q psy14440        524 RMARLWATDSYHPLRLFVG--HYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLTG---HKAPVYALSFSVC  597 (711)
Q Consensus       524 g~i~lwd~~~~~~~~~~~~--h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~~---h~~~I~~la~spd  597 (711)
                      |+|++|+..+..++.+|..  ....|+.+..-| +...+++|...++|.|.++ .|+.++.|..   ..+...+.+.||.
T Consensus       370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpk  448 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPK  448 (508)
T ss_pred             ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCC
Confidence            9999999999999988874  445677777777 6678888988999999997 5888998864   2456777889999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        598 GRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       598 g~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      |.++.+.++|+.++.|...+|++...+.-|...|-.++-+|..+.||+-+.||.+++|.
T Consensus       449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999995

>KOG0266|consensus

Probab=100.00  E-value=4.1e-32  Score=303.22  Aligned_cols=249  Identities=34%  Similarity=0.597  Sum_probs=229.6

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      ..++.+|...|++++|++||+++++|+.|++|+|||+.                              ..+..++++.+|
T Consensus       196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~------------------------------~~~~~~~~l~gH  245 (456)
T KOG0266|consen  196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK------------------------------DDGRNLKTLKGH  245 (456)
T ss_pred             hccccccccceeeeEECCCCcEEEEecCCceEEEeecc------------------------------CCCeEEEEecCC
Confidence            34457899999999999999999999999999999983                              244677899999


Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc--ee
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH--PL  537 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~--~~  537 (711)
                      ...|++++|+++|+++++|+.|++|+|||+++++++..+.+|...|.+++|++++++|++++.|+.|++||+.++.  ++
T Consensus       246 ~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~  325 (456)
T KOG0266|consen  246 STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCL  325 (456)
T ss_pred             CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998  56


Q ss_pred             EEeecCCCC--eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCe---EEEEEecCCCEEEEEeCCCcEEE
Q psy14440        538 RLFVGHYSD--VDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPV---YALSFSVCGRFLASAGGDGNVHM  612 (711)
Q Consensus       538 ~~~~~h~~~--V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I---~~la~spdg~~Lasgs~Dg~I~i  612 (711)
                      ..+.++...  +++++|+|++.|+++++.|+++++||+..+.+++.+.+|...+   .+...+++|+++++|+.|+.|++
T Consensus       326 ~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~  405 (456)
T KOG0266|consen  326 KLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV  405 (456)
T ss_pred             ecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE
Confidence            777777666  9999999999999999999999999999999999999998754   34455778999999999999999


Q ss_pred             EECCCCeEEEEeeCC-CCCEEEEEEeCCCCEEEEEe--CCCcEEEEeCC
Q psy14440        613 WDLSNGHLLTLLTGH-TDVVRALCFSRDGNILASSG--QDCSVKLWDFA  658 (711)
Q Consensus       613 wDl~sg~~i~~l~~h-~~~V~sl~fspdg~~Lasgs--~Dg~V~iWdl~  658 (711)
                      ||+.++..+..+.+| ...+..++|++..+++++++  .|+.+++|...
T Consensus       406 ~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  406 WDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            999999999999999 88999999999999999998  78999999764

>KOG0319|consensus

Probab=100.00  E-value=7.4e-33  Score=299.51  Aligned_cols=257  Identities=26%  Similarity=0.456  Sum_probs=228.7

Q ss_pred             CceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEE
Q psy14440        376 PSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRT  455 (711)
Q Consensus       376 ps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  455 (711)
                      +...+.-+.+|.+.|.+++...+|-+||+|+.|.+|++|.++.+..                           ....+..
T Consensus       354 ~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~---------------------------~~~~~a~  406 (775)
T KOG0319|consen  354 PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS---------------------------KSLCVAQ  406 (775)
T ss_pred             CCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc---------------------------hhhhhhh
Confidence            3334446789999999999888889999999999999999843221                           1223445


Q ss_pred             eecccCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe---------EEEEEecCCCCEEEEEEcCCCCEEEEEECCCe
Q psy14440        456 LVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLLLWR---------CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRM  525 (711)
Q Consensus       456 l~~h~~~V~~l~fspdg-~~L~s~s~Dg~V~iwdl~t~~---------~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~  525 (711)
                      ..||++.|.+++++..+ .+|+++|.|++|++|++...+         +..+...|...|++++++|+...|||||.|++
T Consensus       407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt  486 (775)
T KOG0319|consen  407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT  486 (775)
T ss_pred             hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence            67899999999997755 489999999999999996511         11133579999999999999999999999999


Q ss_pred             EEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEe
Q psy14440        526 ARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAG  605 (711)
Q Consensus       526 i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs  605 (711)
                      +++|+++......++.||...|.||.|+++...++|+|.|++|+||.+.++.|+++|.||...|..+.|-.+|+.|+||+
T Consensus       487 aKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~  566 (775)
T KOG0319|consen  487 AKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG  566 (775)
T ss_pred             eeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        606 GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       606 ~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      .||.|++|+++++.++.++.+|++.|++++.++.+.+++||+.||.|.+|.=.+
T Consensus       567 adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  567 ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             CCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            999999999999999999999999999999999999999999999999996433

>KOG0296|consensus

Probab=100.00  E-value=1.9e-32  Score=275.51  Aligned_cols=278  Identities=20%  Similarity=0.242  Sum_probs=246.6

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee-----------eeccCccccccccccCCcEEEEEec
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLK-----------AMKSSDQLQDIEMECDDILVRIMDE  447 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~-----------~~~~~~~~~~l~~~~~d~~i~i~d~  447 (711)
                      ..+.+.+|++.|+|+.||.||.+||||+.+|.|+||...++...           -+.+++....++.++.||.+.+|..
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i  177 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI  177 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence            56789999999999999999999999999999999999876533           3455666777889999999999999


Q ss_pred             CCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC-CCCEEEEEEcCCCCEEEEEECCCeE
Q psy14440        448 RNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH-GHPVWDIKFSPHGYYFASAGHDRMA  526 (711)
Q Consensus       448 ~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h-~~~V~~v~~sp~g~~l~sgs~Dg~i  526 (711)
                      .+....+.+.||..++++=.|.|+|+.++++..||+|++||..+++.+..+.+. .....++.++..+..++.|+.++.+
T Consensus       178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~  257 (399)
T KOG0296|consen  178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA  257 (399)
T ss_pred             CCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence            998899999999999999999999999999999999999999999999888643 4467788999999999999999999


Q ss_pred             EEEECCCCceeEEee--------cCCCCeeEEEEcC---CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEe
Q psy14440        527 RLWATDSYHPLRLFV--------GHYSDVDCVQFHP---NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFS  595 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~--------~h~~~V~~v~~sp---~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~s  595 (711)
                      ++.+..+++.+..+.        .+...+.||.+.|   .-.+.|+|+-||+|.|||+...+. |..-.|...|+.+.|-
T Consensus       258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-R~~c~he~~V~~l~w~  336 (399)
T KOG0296|consen  258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL-RHICEHEDGVTKLKWL  336 (399)
T ss_pred             EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-heeccCCCceEEEEEc
Confidence            999998888777665        3555566666655   445689999999999999987764 4445588999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        596 VCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       596 pdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      + ..+|++++.+|.|++||.++|+++..+.||...|.++++++++++++|+|.|++.+||++.
T Consensus       337 ~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  337 N-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             C-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            8 7899999999999999999999999999999999999999999999999999999999875

>KOG0318|consensus

Probab=100.00  E-value=7.2e-31  Score=274.46  Aligned_cols=307  Identities=19%  Similarity=0.319  Sum_probs=253.9

Q ss_pred             EEecCCCceEEEEECCCC-CEEEEEeCCCeEEEEeCCCCc-----------eeeeccCccccccccccCCcEEEEEecCC
Q psy14440        382 TLLNARQQVTCAEISEDV-SILAVGFSESYIKLWSLVPQK-----------LKAMKSSDQLQDIEMECDDILVRIMDERN  449 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg-~~LatG~~dg~I~vWdl~~~~-----------~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  449 (711)
                      .+.+|...|++++|-|.- -.+++|++|++|.+|.--.-+           +..+.+++++..++..+.|+.+.+||-.+
T Consensus       142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt  221 (603)
T KOG0318|consen  142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT  221 (603)
T ss_pred             eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence            578899999999999866 468899999999998753322           45677888888999999999999999999


Q ss_pred             CeeEEEee---cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE-------------------------------
Q psy14440        450 AETTRTLV---GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCL-------------------------------  495 (711)
Q Consensus       450 ~~~~~~l~---~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~-------------------------------  495 (711)
                      ++.+..+.   +|.|.|++++|+||+..++++|.|.+++|||+.+.+++                               
T Consensus       222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~  301 (603)
T KOG0318|consen  222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGT  301 (603)
T ss_pred             ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcE
Confidence            99999998   89999999999999999999999999999998554332                               


Q ss_pred             ------------EEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeE-------------------------
Q psy14440        496 ------------VVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLR-------------------------  538 (711)
Q Consensus       496 ------------~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~-------------------------  538 (711)
                                  .++.||+..|+++..++++.+|++|+.||.|.-|+..++..-+                         
T Consensus       302 in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g  381 (603)
T KOG0318|consen  302 INYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG  381 (603)
T ss_pred             EEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe
Confidence                        3456899999999999999999999999999999876532110                         


Q ss_pred             ------Ee------------------------------------------ecC--------CCCeeEEEEcCCCCEEEEE
Q psy14440        539 ------LF------------------------------------------VGH--------YSDVDCVQFHPNSNYVATG  562 (711)
Q Consensus       539 ------~~------------------------------------------~~h--------~~~V~~v~~sp~~~~latg  562 (711)
                            .+                                          ..+        .-...|++++|++.++++|
T Consensus       382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVG  461 (603)
T KOG0318|consen  382 WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVG  461 (603)
T ss_pred             cCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEe
Confidence                  00                                          000        0123578899999999999


Q ss_pred             EcCCcEEEEECCCCcE--EEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE-EEeeCCCCCEEEEEEeCC
Q psy14440        563 SSDRTIRLWDCVTGSH--VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLL-TLLTGHTDVVRALCFSRD  639 (711)
Q Consensus       563 s~Dg~I~iwD~~~~~~--v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i-~~l~~h~~~V~sl~fspd  639 (711)
                      +.||.|+||.+..+..  ......|.++|+++++||||.|||+|+..+.|.+||..+.+.. ..+..|++.|.+++|+|+
T Consensus       462 G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~  541 (603)
T KOG0318|consen  462 GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN  541 (603)
T ss_pred             cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC
Confidence            9999999999987653  3345679999999999999999999999999999999988764 344569999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee-C
Q psy14440        640 GNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR-G  710 (711)
Q Consensus       640 g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-G  710 (711)
                      ..++|+||.|.+|.||++++....                      +..-..|...|+.|.|-..+.++. |
T Consensus       542 n~~vATGSlDt~Viiysv~kP~~~----------------------i~iknAH~~gVn~v~wlde~tvvSsG  591 (603)
T KOG0318|consen  542 NKLVATGSLDTNVIIYSVKKPAKH----------------------IIIKNAHLGGVNSVAWLDESTVVSSG  591 (603)
T ss_pred             ceEEEeccccceEEEEEccChhhh----------------------eEeccccccCceeEEEecCceEEecc
Confidence            999999999999999999875432                      223344555699999988888876 6

>KOG0306|consensus

Probab=100.00  E-value=1.3e-31  Score=289.64  Aligned_cols=279  Identities=24%  Similarity=0.391  Sum_probs=250.5

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-eee--------ccCccccccccccCCcEEEEEecCCC
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKL-KAM--------KSSDQLQDIEMECDDILVRIMDERNA  450 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~-~~~--------~~~~~~~~l~~~~~d~~i~i~d~~~~  450 (711)
                      -+++.+|+..|.++++|.|...+++|+. +.|+||+..+.+. +.+        .+-+....+..+...|.+.++|..+.
T Consensus       366 ~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~  444 (888)
T KOG0306|consen  366 NIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA  444 (888)
T ss_pred             eeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence            3678899999999999999999999875 4599999986543 222        23344566788899999999999999


Q ss_pred             eeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CeEEEEEe-------cCCCCEEEEEEcCCCCEEE
Q psy14440        451 ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL-----WRCLVVYK-------GHGHPVWDIKFSPHGYYFA  518 (711)
Q Consensus       451 ~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t-----~~~~~~~~-------~h~~~V~~v~~sp~g~~l~  518 (711)
                      ..+.+...|.+.|++++.+||+..+++||.|.+|++||...     +...+.++       .-...|.|+.+||||++++
T Consensus       445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La  524 (888)
T KOG0306|consen  445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA  524 (888)
T ss_pred             hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence            99999999999999999999999999999999999999731     11111111       1356799999999999999


Q ss_pred             EEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCC
Q psy14440        519 SAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCG  598 (711)
Q Consensus       519 sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg  598 (711)
                      ++--|.+|++|-+++.+-...+.||.-+|.|+..+|+++.++|||.|++|+||-++-|.|.+.|.+|...|.++.|-|..
T Consensus       525 VsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~  604 (888)
T KOG0306|consen  525 VSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKT  604 (888)
T ss_pred             EEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccc
Confidence            99999999999999999888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        599 RFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       599 ~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ..++++|.||.|+-||-.+-+.+..+.+|...|++++.+|+|.+++++|.|.+||+|....
T Consensus       605 ~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  605 HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             eeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            9999999999999999999999999999999999999999999999999999999999876

>KOG0315|consensus

Probab=100.00  E-value=8.2e-31  Score=251.58  Aligned_cols=256  Identities=23%  Similarity=0.368  Sum_probs=221.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEE
Q psy14440        399 VSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSC  478 (711)
Q Consensus       399 g~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~  478 (711)
                      .-+||+++.|.+||+|..                               .+|...+++....+.|..+...||++.|+++
T Consensus        10 ~viLvsA~YDhTIRfWqa-------------------------------~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa   58 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQA-------------------------------LTGICSRTIQHPDSQVNRLEITPDKKDLAAA   58 (311)
T ss_pred             ceEEEeccCcceeeeeeh-------------------------------hcCeEEEEEecCccceeeEEEcCCcchhhhc
Confidence            347888888888888876                               4677788888788899999999999999998


Q ss_pred             eCCCeEEEEECCCCe--EEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCC
Q psy14440        479 SQDNTIRLWSLLLWR--CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNS  556 (711)
Q Consensus       479 s~Dg~V~iwdl~t~~--~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~  556 (711)
                      +. ..||+||+.++.  .+.+|.+|...|+.+.|..+|+++++||+||+++|||++...+.+.+. |.++|+++..||+.
T Consensus        59 ~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ  136 (311)
T KOG0315|consen   59 GN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ  136 (311)
T ss_pred             cC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc
Confidence            76 459999998765  588999999999999999999999999999999999999977777765 67999999999999


Q ss_pred             CEEEEEEcCCcEEEEECCCCcEEEEeeC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC------eEEEEeeCCCC
Q psy14440        557 NYVATGSSDRTIRLWDCVTGSHVRLLTG-HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNG------HLLTLLTGHTD  629 (711)
Q Consensus       557 ~~latgs~Dg~I~iwD~~~~~~v~~~~~-h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg------~~i~~l~~h~~  629 (711)
                      ..|++|..+|.|++||+....+.+.+.. ....|.++++.+||.+|+.+...|+.++|++-++      +.+..++.|.+
T Consensus       137 teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~  216 (311)
T KOG0315|consen  137 TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG  216 (311)
T ss_pred             ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccc
Confidence            9999999999999999998877766653 4568999999999999999999999999998764      34667889999


Q ss_pred             CEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        630 VVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       630 ~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      .+..+.+|||+++||++|.|.+|+||+...+-                      .+-....++..=|...+||.|+.+|.
T Consensus       217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~----------------------kle~~l~gh~rWvWdc~FS~dg~Ylv  274 (311)
T KOG0315|consen  217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFF----------------------KLELVLTGHQRWVWDCAFSADGEYLV  274 (311)
T ss_pred             eEEEEEECCCCcEEEeecCCceEEEEecCCce----------------------eeEEEeecCCceEEeeeeccCccEEE
Confidence            99999999999999999999999999987641                      11123555667788999999999887

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.2e-30  Score=263.52  Aligned_cols=268  Identities=34%  Similarity=0.557  Sum_probs=241.7

Q ss_pred             CceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Q psy14440        419 QKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY  498 (711)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~  498 (711)
                      ..+..+..+++...++.++.++.+.+|+..++.....+.+|...+.++.|++++++|++++.||.|++|++.+++.+..+
T Consensus        10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~   89 (289)
T cd00200          10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL   89 (289)
T ss_pred             CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence            34555666666777888888999999999988888899999999999999999999999999999999999988888899


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE
Q psy14440        499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH  578 (711)
Q Consensus       499 ~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~  578 (711)
                      ..|...|.++.|++++.++++++.||.+++||+++++....+..|...+.+++|++++.++++++.||.|++||+++++.
T Consensus        90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~  169 (289)
T cd00200          90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC  169 (289)
T ss_pred             eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence            99999999999999988999988899999999998888888889999999999999999999988899999999999999


Q ss_pred             EEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        579 VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       579 v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      +..+..|...+.+++|+++++.+++++.||.|++||+.+++.+..+..|...+.+++|++++.++++++.||.|++||+.
T Consensus       170 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~  249 (289)
T cd00200         170 VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR  249 (289)
T ss_pred             ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence            99999999999999999999999999999999999999999999998899999999999999999998889999999986


Q ss_pred             CCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        659 KLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      ..                       ..+..+..+...|.++.|++++.+|+
T Consensus       250 ~~-----------------------~~~~~~~~~~~~i~~~~~~~~~~~l~  277 (289)
T cd00200         250 TG-----------------------ECVQTLSGHTNSVTSLAWSPDGKRLA  277 (289)
T ss_pred             Cc-----------------------eeEEEccccCCcEEEEEECCCCCEEE
Confidence            41                       22334556778999999999977666

>KOG0281|consensus

Probab=100.00  E-value=5.2e-33  Score=276.97  Aligned_cols=242  Identities=31%  Similarity=0.548  Sum_probs=216.7

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      .|.+.+.||.+.|.|+.|..  +.|++|++|++|+|||+.                               +++.+.++.
T Consensus       228 ~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~-------------------------------tge~l~tli  274 (499)
T KOG0281|consen  228 ECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVN-------------------------------TGEPLNTLI  274 (499)
T ss_pred             HHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEecc-------------------------------CCchhhHHh
Confidence            46788999999999999965  499999999999999984                               567788899


Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---EEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR---CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~---~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      +|...|..+.|+  +.++++||.|.++++||+....   +..++.||...|..+.|+  .+|+++++.|++|++|++.++
T Consensus       275 hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~  350 (499)
T KOG0281|consen  275 HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC  350 (499)
T ss_pred             hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence            999999999997  5599999999999999997644   345678999999999997  459999999999999999999


Q ss_pred             ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q psy14440        535 HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD  614 (711)
Q Consensus       535 ~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwD  614 (711)
                      +.++++.+|...|-|+.+  +++++++||+|.+|++||+..|.+++.+.||..-|.|+.|.  .+.|++|+.||+|+|||
T Consensus       351 efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWd  426 (499)
T KOG0281|consen  351 EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWD  426 (499)
T ss_pred             eeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEe
Confidence            999999999999999988  58999999999999999999999999999999999999995  77899999999999999


Q ss_pred             CCCCe---------EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        615 LSNGH---------LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       615 l~sg~---------~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      +.++.         ++..+..|++.|..+.|.  ...+++++.|.+|-|||+-+...
T Consensus       427 l~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  427 LQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             cccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCc
Confidence            97753         345566799999999994  67899999999999999987554

>KOG0285|consensus

Probab=99.98  E-value=1.6e-31  Score=267.67  Aligned_cols=237  Identities=29%  Similarity=0.540  Sum_probs=220.2

Q ss_pred             CeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q psy14440        450 AETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLW  529 (711)
Q Consensus       450 ~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lw  529 (711)
                      .+..+.+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.+++...++.||-..|..+++|+-..|+++++.|+.|++|
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCc
Q psy14440        530 ATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGN  609 (711)
Q Consensus       530 d~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~  609 (711)
                      |++..+.++.+.||.+.|.|++.||.-..|++|+.|.++||||+++...+..+.||+.+|.++.+.+-...+++|+.|++
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t  300 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST  300 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888999999999


Q ss_pred             EEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeec
Q psy14440        610 VHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSY  689 (711)
Q Consensus       610 I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  689 (711)
                      |++||++.|+....+..|...|.+++.+|....+|++|.| .|+-|++..                       +..+..+
T Consensus       301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~-----------------------g~f~~nl  356 (460)
T KOG0285|consen  301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPE-----------------------GEFLQNL  356 (460)
T ss_pred             EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCc-----------------------cchhhcc
Confidence            9999999999999999999999999999999999999987 789999865                       3334456


Q ss_pred             ccCCcceEEEEEccCCeeeeC
Q psy14440        690 KTKASPLLHLIFSRRNILLRG  710 (711)
Q Consensus       690 ~t~~~pV~~v~Fs~~n~llaG  710 (711)
                      ..|+.-|..+.-..||-+++|
T Consensus       357 sgh~~iintl~~nsD~v~~~G  377 (460)
T KOG0285|consen  357 SGHNAIINTLSVNSDGVLVSG  377 (460)
T ss_pred             ccccceeeeeeeccCceEEEc
Confidence            777777888888877777763

>KOG0292|consensus

Probab=99.98  E-value=3.4e-31  Score=289.94  Aligned_cols=247  Identities=26%  Similarity=0.504  Sum_probs=225.5

Q ss_pred             cCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEE
Q psy14440        385 NARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVR  464 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~  464 (711)
                      .-...|..++|+|.--++.++-..|.|++||.                               +-+..+..|..|.|+|.
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDY-------------------------------RM~tli~rFdeHdGpVR   55 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDY-------------------------------RMGTLIDRFDEHDGPVR   55 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehh-------------------------------hhhhHHhhhhccCCccc
Confidence            34567889999999999999999999999997                               34556778889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCC
Q psy14440        465 KLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHY  544 (711)
Q Consensus       465 ~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~  544 (711)
                      +++|+|.+.+++||+.|-.|+||+..+.+|+.++.||...|..+.|++.-.+|+++|.|.+|+||+..+++++..+.||.
T Consensus        56 gv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHn  135 (1202)
T KOG0292|consen   56 GVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHN  135 (1202)
T ss_pred             eeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEcCCCCEEEEEEcCCcEEEEECCC--------C-------------------c--EEEEeeCCCCCeEEEEEe
Q psy14440        545 SDVDCVQFHPNSNYVATGSSDRTIRLWDCVT--------G-------------------S--HVRLLTGHKAPVYALSFS  595 (711)
Q Consensus       545 ~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~--------~-------------------~--~v~~~~~h~~~I~~la~s  595 (711)
                      .-|.|..|||....++++|-|.+|||||+..        +                   .  ....+.||...|+-++|+
T Consensus       136 HYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh  215 (1202)
T KOG0292|consen  136 HYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH  215 (1202)
T ss_pred             eEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence            9999999999999999999999999999742        1                   1  123567999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCe--EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        596 VCGRFLASAGGDGNVHMWDLSNGH--LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       596 pdg~~Lasgs~Dg~I~iwDl~sg~--~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      |.-..|+||++|..|++|.+...+  .+.+.+||.+.|.++-|+|..++++|.|.|++|||||+.+.+.
T Consensus       216 pTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~  284 (1202)
T KOG0292|consen  216 PTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS  284 (1202)
T ss_pred             CCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc
Confidence            999999999999999999987654  4677899999999999999999999999999999999987544

>KOG0283|consensus

Probab=99.98  E-value=5.6e-31  Score=290.47  Aligned_cols=277  Identities=21%  Similarity=0.308  Sum_probs=216.7

Q ss_pred             EEe-cCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCcc----------c----------------cccc
Q psy14440        382 TLL-NARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQ----------L----------------QDIE  434 (711)
Q Consensus       382 tl~-~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~----------~----------------~~l~  434 (711)
                      .+. .|.+.|+|+.||+||+|||+|+.||.|+||.+...+...+.....          .                ....
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            355 799999999999999999999999999999986633221111100          0                0000


Q ss_pred             cccCCcEEEEEe---cCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEc
Q psy14440        435 MECDDILVRIMD---ERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFS  511 (711)
Q Consensus       435 ~~~~d~~i~i~d---~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~s  511 (711)
                      .+.....+.+-+   ....+.++.+.||.+.|..++||.+ .+|+++|.|.|||+|++...+|+++|. |...|+||+|+
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn  418 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN  418 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence            011111111111   1234567789999999999999965 599999999999999999999999998 99999999999


Q ss_pred             C-CCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC--C---
Q psy14440        512 P-HGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG--H---  585 (711)
Q Consensus       512 p-~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~--h---  585 (711)
                      | |.+||++|+-||.||||++-..+.+.-. .-..-|++++|.|+|++.++|+.+|.+++|+....+.+..+.-  |   
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K  497 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK  497 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence            9 7899999999999999999876654433 3347799999999999999999999999999987766554421  1   


Q ss_pred             ---CCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEeeCCCC--CEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        586 ---KAPVYALSFSVC-GRFLASAGGDGNVHMWDLSNGHLLTLLTGHTD--VVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       586 ---~~~I~~la~spd-g~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~--~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                         ...|+.+.|.|. ...|++.+.|..|+|||+++..++..++|+..  .=...+|+.||++|++|+.|..|+||++..
T Consensus       498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence               227999999874 33577778999999999999999999997653  334668999999999999999999999855


Q ss_pred             CC
Q psy14440        660 LS  661 (711)
Q Consensus       660 ~~  661 (711)
                      ..
T Consensus       578 ~~  579 (712)
T KOG0283|consen  578 FN  579 (712)
T ss_pred             Cc
Confidence            43

>KOG0296|consensus

Probab=99.97  E-value=1.5e-29  Score=254.84  Aligned_cols=305  Identities=17%  Similarity=0.230  Sum_probs=269.8

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------eeeeccCccccccccccCCcEEEEEecC
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-----------LKAMKSSDQLQDIEMECDDILVRIMDER  448 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-----------~~~~~~~~~~~~l~~~~~d~~i~i~d~~  448 (711)
                      ..+|..|.+.|.+++.+|+.+++|||+.|..-.||++.++.           +..+.++.+...++.+.-+|.+++|+..
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s  136 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS  136 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence            56899999999999999999999999999999999997764           4456677888999999999999999999


Q ss_pred             CCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEE
Q psy14440        449 NAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARL  528 (711)
Q Consensus       449 ~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~l  528 (711)
                      ++.....+...-+.|.-+.|+|-+..|+.|+.||.|.+|.+.+....+.+.||+.++++-.|.|+|+.++++..||+|++
T Consensus       137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~  216 (399)
T KOG0296|consen  137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV  216 (399)
T ss_pred             cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence            99999998877788999999999999999999999999999998888999999999999999999999999999999999


Q ss_pred             EECCCCceeEEeec-CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee--------CCCCCeEEE---EEec
Q psy14440        529 WATDSYHPLRLFVG-HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT--------GHKAPVYAL---SFSV  596 (711)
Q Consensus       529 wd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~--------~h~~~I~~l---a~sp  596 (711)
                      |+..+++++..+.+ ......|+.++.++..++.|+.++.+++.+..+|+.+..+.        .+...+.|+   .|+.
T Consensus       217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss  296 (399)
T KOG0296|consen  217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS  296 (399)
T ss_pred             EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence            99999999888763 34457899999999999999999999999999999888776        344444444   4555


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccc
Q psy14440        597 CGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSAD  676 (711)
Q Consensus       597 dg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~  676 (711)
                      .=.+.|+|+-||+|.|||+.+.+....+. |...|..+.|-+ ..+|++++.||.|++||.++                 
T Consensus       297 ~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt-----------------  357 (399)
T KOG0296|consen  297 KLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDART-----------------  357 (399)
T ss_pred             ccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccc-----------------
Confidence            56688999999999999998876655554 888899999998 68999999999999999875                 


Q ss_pred             cccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        677 IKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       677 ~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                            +.++.+|.+|.-+|+..+.+++..++.
T Consensus       358 ------G~l~~~y~GH~~~Il~f~ls~~~~~vv  384 (399)
T KOG0296|consen  358 ------GQLKFTYTGHQMGILDFALSPQKRLVV  384 (399)
T ss_pred             ------cceEEEEecCchheeEEEEcCCCcEEE
Confidence                  567788999999999999999988776

>KOG0645|consensus

Probab=99.97  E-value=1.9e-29  Score=245.21  Aligned_cols=247  Identities=24%  Similarity=0.438  Sum_probs=212.8

Q ss_pred             ceEEEEEe--cCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEE
Q psy14440        377 SIACYTLL--NARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTR  454 (711)
Q Consensus       377 s~~~~tl~--~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  454 (711)
                      ++.+.+.+  +|+..|.+++|+|.|++||+|+.|+++.||.-..                             ...+.+.
T Consensus        49 s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~-----------------------------~efecv~   99 (312)
T KOG0645|consen   49 SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED-----------------------------GEFECVA   99 (312)
T ss_pred             cEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC-----------------------------CceeEEe
Confidence            45455443  6999999999999999999999999999998643                             2345678


Q ss_pred             EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECC---CCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy14440        455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL---LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWAT  531 (711)
Q Consensus       455 ~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~---t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~  531 (711)
                      .+.||...|.|++|+.+|++||+||.|+.|-||.+.   ..++...++.|...|..+.|+|....|+++|.|.+|++|.-
T Consensus       100 ~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~  179 (312)
T KOG0645|consen  100 TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRD  179 (312)
T ss_pred             eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEee
Confidence            899999999999999999999999999999999986   46788999999999999999999999999999999999976


Q ss_pred             C---CCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCC
Q psy14440        532 D---SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG  608 (711)
Q Consensus       532 ~---~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg  608 (711)
                      .   ...++.++.+|.+.|.+++|+++|..|++++.|++|+||-..+.    .-.-|...++.++|.  ...|++++.|+
T Consensus       180 ~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~W~--~~~IaS~ggD~  253 (312)
T KOG0645|consen  180 EDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVPWD--NGVIASGGGDD  253 (312)
T ss_pred             cCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeeeec--ccceEeccCCC
Confidence            5   45688999999999999999999999999999999999986522    112378899999998  55899999999


Q ss_pred             cEEEEECCCC------eEE-EEeeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEeCC
Q psy14440        609 NVHMWDLSNG------HLL-TLLTGHTDVVRALCFSRD-GNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       609 ~I~iwDl~sg------~~i-~~l~~h~~~V~sl~fspd-g~~Lasgs~Dg~V~iWdl~  658 (711)
                      .|++|--..+      +.+ +.-..|...|+++.|+|. .++|++||.||.|++|.+.
T Consensus       254 ~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  254 AIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            9999976542      111 233578889999999994 7899999999999999874

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1e-28  Score=275.53  Aligned_cols=255  Identities=18%  Similarity=0.297  Sum_probs=209.4

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCee---EEEeecccCC
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAET---TRTLVGHEGP  462 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~l~~h~~~  462 (711)
                      |...|+....++|+..+++++.+.....|+..++.                     ..++....++.   ...+.+|.+.
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~---------------------~v~~~~~~G~~~~~~~~l~GH~~~   77 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST---------------------AVLKHTDYGKLASNPPILLGQEGP   77 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCce---------------------EEeeccccccCCCCCceEeCCCCC
Confidence            34567778888898888888888888999875432                     11122222221   2357899999


Q ss_pred             EEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------eEEEEEecCCCCEEEEEEcCCC-CEEEEEECCCeEEEEECCC
Q psy14440        463 VRKLSFSP-DRSLLLSCSQDNTIRLWSLLLW-------RCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDS  533 (711)
Q Consensus       463 V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t~-------~~~~~~~~h~~~V~~v~~sp~g-~~l~sgs~Dg~i~lwd~~~  533 (711)
                      |++++|+| ++++|++|+.||+|++||+.+.       ..+..+.+|...|.+++|+|++ ++|++|+.|++|++||+++
T Consensus        78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t  157 (493)
T PTZ00421         78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER  157 (493)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC
Confidence            99999999 8899999999999999999754       3567889999999999999975 6999999999999999999


Q ss_pred             CceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCC-eEEEEEecCCCEEEEEe----CCC
Q psy14440        534 YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAP-VYALSFSVCGRFLASAG----GDG  608 (711)
Q Consensus       534 ~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~-I~~la~spdg~~Lasgs----~Dg  608 (711)
                      ++.+..+.+|...|.+++|++++++|++|+.|++|++||+++++.+..+.+|.+. +..+.|.+++..|++++    .|+
T Consensus       158 g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr  237 (493)
T PTZ00421        158 GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQR  237 (493)
T ss_pred             CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999765 45678899888877654    478


Q ss_pred             cEEEEECCCCe-EEEEeeCC-CCCEEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCC
Q psy14440        609 NVHMWDLSNGH-LLTLLTGH-TDVVRALCFSRDGNILASSG-QDCSVKLWDFAKLS  661 (711)
Q Consensus       609 ~I~iwDl~sg~-~i~~l~~h-~~~V~sl~fspdg~~Lasgs-~Dg~V~iWdl~~~~  661 (711)
                      .|++||+++.. .+.....+ ...+....|++++++|++|| .||.|++||+.+..
T Consensus       238 ~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        238 QIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             eEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence            99999998754 44444333 34566678999999999888 59999999998754

>KOG0313|consensus

Probab=99.97  E-value=2.1e-29  Score=254.65  Aligned_cols=270  Identities=26%  Similarity=0.463  Sum_probs=231.2

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCE
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV  463 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V  463 (711)
                      .-|.+-|.++...  ++++++|+.||.++||+.                                .|+.+..+.||.++|
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~--------------------------------~Gk~~~~~~Ght~~i  147 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDL--------------------------------KGKSIKTIVGHTGPI  147 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCCeeEEEec--------------------------------CCceEEEEecCCcce
Confidence            4577788888877  789999999999999997                                456778899999999


Q ss_pred             EEEEEcCCCC---EEEEEeCCCeEEEEECCCCeEE----EEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC---
Q psy14440        464 RKLSFSPDRS---LLLSCSQDNTIRLWSLLLWRCL----VVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS---  533 (711)
Q Consensus       464 ~~l~fspdg~---~L~s~s~Dg~V~iwdl~t~~~~----~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~---  533 (711)
                      .+++|.-.+.   .|+++|.|.++++|-++.++..    ...+||...|-+|...++|..|++|+.|.++.+|+..+   
T Consensus       148 k~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~  227 (423)
T KOG0313|consen  148 KSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE  227 (423)
T ss_pred             eeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcc
Confidence            9999865443   5999999999999998766543    34459999999999999999999999999999998321   


Q ss_pred             ----------------------CceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEE
Q psy14440        534 ----------------------YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYA  591 (711)
Q Consensus       534 ----------------------~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~  591 (711)
                                            +.++..+.||...|.+|.|++ ...+++++.|.+|+.||+.++.++..+.+ ...++|
T Consensus       228 ~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~  305 (423)
T KOG0313|consen  228 DELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNC  305 (423)
T ss_pred             ccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeE
Confidence                                  246778889999999999997 67899999999999999999999888774 457899


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEECCCCe---EEEEeeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCCCccCcc
Q psy14440        592 LSFSVCGRFLASAGGDGNVHMWDLSNGH---LLTLLTGHTDVVRALCFSRDG-NILASSGQDCSVKLWDFAKLSDEVGTE  667 (711)
Q Consensus       592 la~spdg~~Lasgs~Dg~I~iwDl~sg~---~i~~l~~h~~~V~sl~fspdg-~~Lasgs~Dg~V~iWdl~~~~~~~~~~  667 (711)
                      +..++..++|++|+.|..|++||.+++.   ....+.+|.+.|.++.|+|.. ..|++|+.||++++||++...      
T Consensus       306 i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k------  379 (423)
T KOG0313|consen  306 ISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK------  379 (423)
T ss_pred             eecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC------
Confidence            9999999999999999999999998753   356788999999999999965 578999999999999998633      


Q ss_pred             ccccccccccccccccceeeecccCCcceEEEEEccCCeeee-CC
Q psy14440        668 EVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR-GP  711 (711)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-Ga  711 (711)
                                      ..+..+.+|...|+++.|+.-+.++. ||
T Consensus       380 ----------------~plydI~~h~DKvl~vdW~~~~~IvSGGa  408 (423)
T KOG0313|consen  380 ----------------APLYDIAGHNDKVLSVDWNEGGLIVSGGA  408 (423)
T ss_pred             ----------------CcceeeccCCceEEEEeccCCceEEeccC
Confidence                            34556778899999999998877776 65

>KOG0276|consensus

Probab=99.97  E-value=1.2e-29  Score=269.41  Aligned_cols=245  Identities=22%  Similarity=0.346  Sum_probs=228.8

Q ss_pred             CCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q psy14440        418 PQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV  497 (711)
Q Consensus       418 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~  497 (711)
                      +.+++++..++....+..+--+|.+.||+.++...++.+.-..-+|.+..|-.-.+++++|+.|..||||+..+++.+..
T Consensus        13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~   92 (794)
T KOG0276|consen   13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT   92 (794)
T ss_pred             CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEE
Confidence            44566677777777788888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-ceeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCC
Q psy14440        498 YKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY-HPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVT  575 (711)
Q Consensus       498 ~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~  575 (711)
                      +..|...|.+++.+|...+++++|.|-+|++||.+.. .+.++|.||..-|.+++|+| |.+.+|++|-|++|+||.+.+
T Consensus        93 FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs  172 (794)
T KOG0276|consen   93 FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS  172 (794)
T ss_pred             eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC
Confidence            9999999999999999999999999999999999864 67889999999999999999 678899999999999999999


Q ss_pred             CcEEEEeeCCCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q psy14440        576 GSHVRLLTGHKAPVYALSFSVCG--RFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVK  653 (711)
Q Consensus       576 ~~~v~~~~~h~~~I~~la~spdg--~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~  653 (711)
                      ..+..++.||...|+|+++-+.|  .||++|++|.+|+|||..+..++.++.||...|+.++|+|.-.+++|||.||+||
T Consensus       173 ~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvr  252 (794)
T KOG0276|consen  173 PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVR  252 (794)
T ss_pred             CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEE
Confidence            99999999999999999998754  5999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy14440        654 LWDFAKLSD  662 (711)
Q Consensus       654 iWdl~~~~~  662 (711)
                      ||+-.+...
T Consensus       253 iWhs~Ty~l  261 (794)
T KOG0276|consen  253 IWNSKTYKL  261 (794)
T ss_pred             EecCcceeh
Confidence            999877554

>KOG0643|consensus

Probab=99.97  E-value=6.7e-29  Score=240.71  Aligned_cols=246  Identities=22%  Similarity=0.330  Sum_probs=220.2

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccC
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEG  461 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~  461 (711)
                      -+.+|..+++-+.++.+|.+|.+++.|.++.||-.                               .+++.+.++.||++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s-------------------------------~nGerlGty~GHtG   53 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYS-------------------------------LNGERLGTYDGHTG   53 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEe-------------------------------cCCceeeeecCCCc
Confidence            36789999999999999999999999999999964                               36778889999999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEEC-----CCeEEEEECC----
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH-----DRMARLWATD----  532 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~-----Dg~i~lwd~~----  532 (711)
                      .|+|++.+-+.++|++|+.|.++++||+.+|+++..++ ...+|+.+.|+.+|++++.++.     .+.|.++|++    
T Consensus        54 avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~  132 (327)
T KOG0643|consen   54 AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS  132 (327)
T ss_pred             eEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh
Confidence            99999999999999999999999999999999999998 5789999999999998888764     4679999987    


Q ss_pred             ---CCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEeeCCCCCeEEEEEecCCCEEEEEeCCC
Q psy14440        533 ---SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH-VRLLTGHKAPVYALSFSVCGRFLASAGGDG  608 (711)
Q Consensus       533 ---~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~-v~~~~~h~~~I~~la~spdg~~Lasgs~Dg  608 (711)
                         ...+...+..+.+.++.+-|.|-+.+|++|..||.|.+||+++|.. +.....|...|+.+++++|..++++|+.|.
T Consensus       133 ~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt  212 (327)
T KOG0643|consen  133 DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDT  212 (327)
T ss_pred             hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCc
Confidence               4567788888899999999999999999999999999999999854 555678999999999999999999999999


Q ss_pred             cEEEEECCCCeEEE-------------------------------------------------------EeeCCCCCEEE
Q psy14440        609 NVHMWDLSNGHLLT-------------------------------------------------------LLTGHTDVVRA  633 (711)
Q Consensus       609 ~I~iwDl~sg~~i~-------------------------------------------------------~l~~h~~~V~s  633 (711)
                      +-++||..+-+.++                                                       .+++|-++|++
T Consensus       213 takl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINs  292 (327)
T KOG0643|consen  213 TAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINS  292 (327)
T ss_pred             cceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcce
Confidence            99999976533322                                                       24578899999


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        634 LCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       634 l~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ++|+|+|+..+|||.||.||+.-+..
T Consensus       293 vAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  293 VAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             eEECCCCcccccCCCCceEEEEEecc
Confidence            99999999999999999999987754

>KOG0288|consensus

Probab=99.97  E-value=1.6e-30  Score=265.07  Aligned_cols=279  Identities=25%  Similarity=0.352  Sum_probs=248.6

Q ss_pred             CCCCceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-------------eeeeccCccccccccccCC
Q psy14440        373 ESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-------------LKAMKSSDQLQDIEMECDD  439 (711)
Q Consensus       373 ~~lps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-------------~~~~~~~~~~~~l~~~~~d  439 (711)
                      +.+|+-+.+.+..|.+.|..+.|-++...|++|+.|..|++|+..+.+             +..+.+..+...+...+.|
T Consensus       161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d  240 (459)
T KOG0288|consen  161 DTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASND  240 (459)
T ss_pred             cccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCC
Confidence            568999999999999999999999999999999999999999997766             3345555666677788889


Q ss_pred             cEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy14440        440 ILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFAS  519 (711)
Q Consensus       440 ~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~s  519 (711)
                      +.+++|+........+|.||++.|+++.|.-....+++|+.|.+|++||+....|..++- ....+.+|..+  +..+++
T Consensus       241 ~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~S  317 (459)
T KOG0288|consen  241 KNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVIS  317 (459)
T ss_pred             Cceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeee
Confidence            999999999999999999999999999999877779999999999999999988887765 34556677766  568899


Q ss_pred             EECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC----CCCeEEEEEe
Q psy14440        520 AGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH----KAPVYALSFS  595 (711)
Q Consensus       520 gs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h----~~~I~~la~s  595 (711)
                      |-.|++||+||.++..+.+....+. .|+++..+.++..|.+++.|.++.+.|+++......+...    ....+.+.||
T Consensus       318 gH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS  396 (459)
T KOG0288|consen  318 GHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS  396 (459)
T ss_pred             cccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence            9999999999999999999888765 8999999999999999999999999999999887777532    2348899999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCC--CEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy14440        596 VCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTD--VVRALCFSRDGNILASSGQDCSVKLW  655 (711)
Q Consensus       596 pdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~--~V~sl~fspdg~~Lasgs~Dg~V~iW  655 (711)
                      |++.|+++|+.||.|+||++.+|++.+.+...+.  .|++++|++.|..|++++.++.+++|
T Consensus       397 pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  397 PDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            9999999999999999999999999999886554  59999999999999999999999999

>KOG0277|consensus

Probab=99.97  E-value=9.5e-30  Score=245.00  Aligned_cols=252  Identities=26%  Similarity=0.392  Sum_probs=218.8

Q ss_pred             CceEEEEEecCCCceEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEE
Q psy14440        376 PSIACYTLLNARQQVTCAEISEDV-SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTR  454 (711)
Q Consensus       376 ps~~~~tl~~h~~~V~~l~fs~dg-~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  454 (711)
                      +.+....-....+++..++||+.. +.+++++.||+++|||+.                              .....++
T Consensus        49 ~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~------------------------------~~s~Pi~   98 (311)
T KOG0277|consen   49 KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT------------------------------MPSKPIH   98 (311)
T ss_pred             CCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC------------------------------CCCcchh
Confidence            455555566778999999999865 678889999999999963                              1234677


Q ss_pred             EeecccCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCeEEEEECC
Q psy14440        455 TLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMARLWATD  532 (711)
Q Consensus       455 ~l~~h~~~V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~~  532 (711)
                      .++.|...|+++.|++ +++.++++|.||+|++|+......+.++++|+..|...+|+| .++.|+++|.|+++++||++
T Consensus        99 ~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr  178 (311)
T KOG0277|consen   99 KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR  178 (311)
T ss_pred             HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence            8889999999999998 556788889999999999999999999999999999999999 67899999999999999998


Q ss_pred             CCceeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCC-cEEEEeeCCCCCeEEEEEecC-CCEEEEEeCCCc
Q psy14440        533 SYHPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTG-SHVRLLTGHKAPVYALSFSVC-GRFLASAGGDGN  609 (711)
Q Consensus       533 ~~~~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~-~~v~~~~~h~~~I~~la~spd-g~~Lasgs~Dg~  609 (711)
                      .......+..|...|.|+.|+. +.+.|+||+.|+.||+||+++- ..+..+.+|.-.|..++|||. ...||+++.|-+
T Consensus       179 ~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT  258 (311)
T KOG0277|consen  179 SPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT  258 (311)
T ss_pred             CCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce
Confidence            6544455888999999999988 7788999999999999999875 457788999999999999996 458899999999


Q ss_pred             EEEEECCCC-eEEEEeeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEeC
Q psy14440        610 VHMWDLSNG-HLLTLLTGHTDVVRALCFSR-DGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       610 I~iwDl~sg-~~i~~l~~h~~~V~sl~fsp-dg~~Lasgs~Dg~V~iWdl  657 (711)
                      ++|||...+ ..+.+...|+.-|..+.||. ++.++|++|.|+.++||+-
T Consensus       259 ~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  259 VRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            999999854 45667778899999999998 6779999999999999983

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.6e-27  Score=267.40  Aligned_cols=220  Identities=18%  Similarity=0.283  Sum_probs=181.5

Q ss_pred             CcEEEEEecCCCeeEEEeecccCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe--------EEEEEecCCCCEEEEE
Q psy14440        439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPD-RSLLLSCSQDNTIRLWSLLLWR--------CLVVYKGHGHPVWDIK  509 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspd-g~~L~s~s~Dg~V~iwdl~t~~--------~~~~~~~h~~~V~~v~  509 (711)
                      .+.+++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||+.++.        .+..+.+|...|.+++
T Consensus        53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa  132 (568)
T PTZ00420         53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID  132 (568)
T ss_pred             eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence            455666666666677889999999999999996 7899999999999999997532        3456789999999999


Q ss_pred             EcCCCCE-EEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCC
Q psy14440        510 FSPHGYY-FASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAP  588 (711)
Q Consensus       510 ~sp~g~~-l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~  588 (711)
                      |+|++.. +++++.|++|++||+++++.+..+. |...|.+++|+++|.+|++++.|++|+|||+++++.+..+.+|.+.
T Consensus       133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~  211 (568)
T PTZ00420        133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG  211 (568)
T ss_pred             ECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCC
Confidence            9998875 5789999999999999988777665 5678999999999999999999999999999999999999999886


Q ss_pred             eEEE-----EEecCCCEEEEEeCCC----cEEEEECCC-CeEEEEeeC--CCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        589 VYAL-----SFSVCGRFLASAGGDG----NVHMWDLSN-GHLLTLLTG--HTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       589 I~~l-----a~spdg~~Lasgs~Dg----~I~iwDl~s-g~~i~~l~~--h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      +.+.     .|++++.+|++++.|+    .|+|||+++ ++.+..+..  +.+.+......++|.++++|+.|++|++|+
T Consensus       212 ~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e  291 (568)
T PTZ00420        212 KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQ  291 (568)
T ss_pred             ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence            5443     3458889999988774    799999985 556655443  334444444455688999999999999999


Q ss_pred             CCC
Q psy14440        657 FAK  659 (711)
Q Consensus       657 l~~  659 (711)
                      +..
T Consensus       292 ~~~  294 (568)
T PTZ00420        292 HSL  294 (568)
T ss_pred             ccC
Confidence            965

>KOG0274|consensus

Probab=99.97  E-value=1.2e-28  Score=275.37  Aligned_cols=237  Identities=31%  Similarity=0.530  Sum_probs=216.2

Q ss_pred             cCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEE-eecccCCE
Q psy14440        385 NARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRT-LVGHEGPV  463 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-l~~h~~~V  463 (711)
                      .+...++|..|.  ..++++|+.+++|++|+..                               ++..+.. +.||.+.|
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~-------------------------------~~~~i~~~l~GH~g~V  252 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLN-------------------------------NGYLILTRLVGHFGGV  252 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecc-------------------------------cceEEEeeccCCCCCc
Confidence            366789999999  5689999999999999874                               4445555 99999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecC
Q psy14440        464 RKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGH  543 (711)
Q Consensus       464 ~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h  543 (711)
                      .++++..-+.+|++|+.|.++++||+.++.|..++.+|...|.++...  +.++++|+.|.+|++|++.++..+..+.+|
T Consensus       253 ~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h  330 (537)
T KOG0274|consen  253 WGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGH  330 (537)
T ss_pred             eeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccc
Confidence            999998878899999999999999999999999999999999999875  458888999999999999999999999999


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eEEE
Q psy14440        544 YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNG-HLLT  622 (711)
Q Consensus       544 ~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg-~~i~  622 (711)
                      .+.|.|+..+  +.++++|+.|++|++||+.++++++.+.+|.+.|+++.+... ..+++|+.|++|++||+.++ +++.
T Consensus       331 ~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~  407 (537)
T KOG0274|consen  331 TGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH  407 (537)
T ss_pred             cccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh
Confidence            9999999997  889999999999999999999999999999999999988755 89999999999999999999 9999


Q ss_pred             EeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        623 LLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       623 ~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      .+.+|.+.|.++.+  .+++|++++.||+|++||.....
T Consensus       408 tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  408 TLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             hhcCCccccccccc--ccceeEeccccccEEEeecccCc
Confidence            99999998877665  48899999999999999987643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=8.7e-28  Score=287.12  Aligned_cols=274  Identities=18%  Similarity=0.262  Sum_probs=224.1

Q ss_pred             eeeeccCccccccccccCCcEEEEEecCCC----e----eEEEeecccCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q psy14440        421 LKAMKSSDQLQDIEMECDDILVRIMDERNA----E----TTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLL  491 (711)
Q Consensus       421 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~----~~~~l~~h~~~V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t  491 (711)
                      +..+.++.+...+++++.|+.|++|+....    .    ....+. +...|.+++|++ ++.+|++++.||+|++||+.+
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~  564 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR  564 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence            444566677788899999999999996431    1    122333 456899999987 478999999999999999999


Q ss_pred             CeEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEc-CCCCEEEEEEcCCcEE
Q psy14440        492 WRCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFH-PNSNYVATGSSDRTIR  569 (711)
Q Consensus       492 ~~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~s-p~~~~latgs~Dg~I~  569 (711)
                      ++.+..+.+|...|++++|++ ++.+|++|+.||+|++||++++..+..+..+ ..|.++.|+ +++.+|++|+.||+|+
T Consensus       565 ~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~  643 (793)
T PLN00181        565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVY  643 (793)
T ss_pred             CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEE
Confidence            999999999999999999997 7889999999999999999999888888754 679999995 4799999999999999


Q ss_pred             EEECCCCc-EEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC------CeEEEEeeCCCCCEEEEEEeCCCCE
Q psy14440        570 LWDCVTGS-HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN------GHLLTLLTGHTDVVRALCFSRDGNI  642 (711)
Q Consensus       570 iwD~~~~~-~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s------g~~i~~l~~h~~~V~sl~fspdg~~  642 (711)
                      +||+++++ .+..+.+|...|++++|. ++.+|++|+.|++|+|||+..      ++.+..+.+|...+..++|++++.+
T Consensus       644 iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~  722 (793)
T PLN00181        644 YYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY  722 (793)
T ss_pred             EEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCE
Confidence            99998876 467788999999999997 788999999999999999974      3578889999999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCCCccCcccccccccccccccccccee--eecccCCcceEEEEEccCCeeee
Q psy14440        643 LASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLV--RSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       643 Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      |++|+.||+|++|+........... .           .....+  .....+...|.+++|++++..|+
T Consensus       723 lasgs~D~~v~iw~~~~~~~~~s~~-~-----------~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lv  779 (793)
T PLN00181        723 IATGSETNEVFVYHKAFPMPVLSYK-F-----------KTIDPVSGLEVDDASQFISSVCWRGQSSTLV  779 (793)
T ss_pred             EEEEeCCCEEEEEECCCCCceEEEe-c-----------ccCCcccccccCCCCcEEEEEEEcCCCCeEE
Confidence            9999999999999976432111000 0           000000  11234556899999999998777

>KOG0292|consensus

Probab=99.97  E-value=8.1e-29  Score=271.45  Aligned_cols=250  Identities=23%  Similarity=0.423  Sum_probs=225.1

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      .++..|.+|.++|..++|++++.++++|++|-.|+||++.                               +.+++.++.
T Consensus        42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk-------------------------------~rrclftL~   90 (1202)
T KOG0292|consen   42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK-------------------------------TRRCLFTLL   90 (1202)
T ss_pred             hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc-------------------------------cceehhhhc
Confidence            3455688999999999999999999999999999999985                               445677889


Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc--
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH--  535 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~--  535 (711)
                      ||-..|..+.|++.-.+++|+|.|.||+||++.+.+|+.++.||+..|.|..|+|....++++|-|.+||+||+..-+  
T Consensus        91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk  170 (1202)
T KOG0292|consen   91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKK  170 (1202)
T ss_pred             cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999985310  


Q ss_pred             ---------------------------eeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE--EEEeeCCC
Q psy14440        536 ---------------------------PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH--VRLLTGHK  586 (711)
Q Consensus       536 ---------------------------~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~--v~~~~~h~  586 (711)
                                                 ...++.||...|+-++|||.-..|++|++|+.|++|.+...+.  +-+..||.
T Consensus       171 ~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~  250 (1202)
T KOG0292|consen  171 NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHY  250 (1202)
T ss_pred             CCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhccc
Confidence                                       1235679999999999999999999999999999999876553  45677999


Q ss_pred             CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        587 APVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       587 ~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      +.|+++-|+|...+|+|.|+|++|+|||+...+.+.+++.-.+..+.++-+|..+++++| .|+.+.||.+..
T Consensus       251 nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleR  322 (1202)
T KOG0292|consen  251 NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLER  322 (1202)
T ss_pred             CCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcc
Confidence            999999999999999999999999999999999999998878899999999999977755 677888888874

>KOG0299|consensus

Probab=99.96  E-value=7.7e-29  Score=256.23  Aligned_cols=297  Identities=21%  Similarity=0.326  Sum_probs=242.6

Q ss_pred             ceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee-eeccCccccccccccCCcEEEEEecCCCeeEEE
Q psy14440        377 SIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLK-AMKSSDQLQDIEMECDDILVRIMDERNAETTRT  455 (711)
Q Consensus       377 s~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  455 (711)
                      +..+..+..|+-.|+|+++++|++++.+++.+|+|.=|++.+++.. .+...+..  +  .           ..+...+.
T Consensus       132 s~~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev--~--k-----------~~~~~~k~  196 (479)
T KOG0299|consen  132 SSDFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV--L--K-----------SHGNPLKE  196 (479)
T ss_pred             cccceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh--h--h-----------hccCCCCc
Confidence            4456678889999999999999999999999999999999776533 11111100  0  0           01111111


Q ss_pred             e-ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        456 L-VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       456 l-~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      - .+|...|.+++.|+||++|++|+.|..|.||+.++.+.+..+++|.+.|.+++|-...+.+++++.|+++++|+++..
T Consensus       197 ~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~  276 (479)
T KOG0299|consen  197 SRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL  276 (479)
T ss_pred             ccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh
Confidence            1 489999999999999999999999999999999999999999999999999999988889999999999999999999


Q ss_pred             ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q psy14440        535 HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD  614 (711)
Q Consensus       535 ~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwD  614 (711)
                      ..+.++.||...|..|....-++.+-+|+.|+++++|++. ....-+|.+|.+.+.|++|-.+ ..+++|+++|.|.+|+
T Consensus       277 s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs  354 (479)
T KOG0299|consen  277 SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWS  354 (479)
T ss_pred             HHHHHHhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEee
Confidence            9999999999999999988888888888899999999994 3445578899999999999755 5678999999999999


Q ss_pred             CCCCeEEEEee-CCC-----------CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccc
Q psy14440        615 LSNGHLLTLLT-GHT-----------DVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSL  682 (711)
Q Consensus       615 l~sg~~i~~l~-~h~-----------~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~  682 (711)
                      +.+.+.+.+.. +|.           ..|++|+..+..+++|+|+.+|.||+|-+.......                  
T Consensus       355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i------------------  416 (479)
T KOG0299|consen  355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI------------------  416 (479)
T ss_pred             ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc------------------
Confidence            99988877664 232           279999999999999999999999999998643311                  


Q ss_pred             cceeeecccCCcceEEEEEccCCeee-eC
Q psy14440        683 AYLVRSYKTKASPLLHLIFSRRNILL-RG  710 (711)
Q Consensus       683 ~~~l~~~~t~~~pV~~v~Fs~~n~ll-aG  710 (711)
                       .++..++ -.+=|.+|+|+.+|..+ ||
T Consensus       417 -~~l~~ls-~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  417 -NLLYSLS-LVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             -ceeeecc-cccEEEEEEEccCCCEEEEe
Confidence             1222233 44668899999999844 44

>KOG0640|consensus

Probab=99.96  E-value=9.4e-29  Score=243.59  Aligned_cols=235  Identities=26%  Similarity=0.444  Sum_probs=193.0

Q ss_pred             ceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecC-CCeeEEE
Q psy14440        377 SIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDER-NAETTRT  455 (711)
Q Consensus       377 s~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~  455 (711)
                      ......+..|...+.|.+||+||.++|+|+.|..|+|.|++..--+.     ....+..+         +.. ..-.+++
T Consensus       102 ~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks-----~~~em~~~---------~~qa~hPvIRT  167 (430)
T KOG0640|consen  102 EYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS-----KPKEMISG---------DTQARHPVIRT  167 (430)
T ss_pred             ccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc-----chhhhccC---------CcccCCceEee
Confidence            34455688999999999999999999999999999999985211110     00000000         111 2356889


Q ss_pred             eecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe--cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy14440        456 LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK--GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS  533 (711)
Q Consensus       456 l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~--~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~  533 (711)
                      |..|...|+++.|+|....|++|+.|++|++||+..-...+.++  ....+|.++.|+|.|.++++|...-++++||+++
T Consensus       168 lYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T  247 (430)
T KOG0640|consen  168 LYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT  247 (430)
T ss_pred             hhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence            99999999999999999999999999999999996433222222  2467899999999999999999999999999999


Q ss_pred             CceeEEe---ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee-CCC-CCeEEEEEecCCCEEEEEeCCC
Q psy14440        534 YHPLRLF---VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT-GHK-APVYALSFSVCGRFLASAGGDG  608 (711)
Q Consensus       534 ~~~~~~~---~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~-~h~-~~I~~la~spdg~~Lasgs~Dg  608 (711)
                      .++...-   ..|.+.|++|.++++++..+|||.||.|++||--+++|++++. .|. +.|.+..|+.+|+||.+.|.|.
T Consensus       248 ~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS  327 (430)
T KOG0640|consen  248 YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS  327 (430)
T ss_pred             eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence            8776543   3689999999999999999999999999999999999999986 454 5689999999999999999999


Q ss_pred             cEEEEECCCCeEEEEee
Q psy14440        609 NVHMWDLSNGHLLTLLT  625 (711)
Q Consensus       609 ~I~iwDl~sg~~i~~l~  625 (711)
                      .|++|.+.+|+++.++.
T Consensus       328 ~vkLWEi~t~R~l~~Yt  344 (430)
T KOG0640|consen  328 TVKLWEISTGRMLKEYT  344 (430)
T ss_pred             eeeeeeecCCceEEEEe
Confidence            99999999988877654

>KOG0973|consensus

Probab=99.96  E-value=2.5e-28  Score=275.57  Aligned_cols=286  Identities=25%  Similarity=0.391  Sum_probs=235.7

Q ss_pred             EEecCC-CceEEEEECCCCCEEEEEe--CCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        382 TLLNAR-QQVTCAEISEDVSILAVGF--SESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       382 tl~~h~-~~V~~l~fs~dg~~LatG~--~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      ++.+|+ ..|.+++.+|||..+|+|+  .||.++||+.+.---.                   ..-++..-.+...+...
T Consensus         7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~-------------------~~~~~~~l~k~l~~m~~   67 (942)
T KOG0973|consen    7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE-------------------KEEKNENLPKHLCTMDD   67 (942)
T ss_pred             cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccch-------------------hhhhhcccchhheeecc
Confidence            444554 5689999999999999999  8999999997531100                   00012122345667788


Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECC------------------CCeEEEEEecCCCCEEEEEEcCCCCEEEEE
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL------------------LWRCLVVYKGHGHPVWDIKFSPHGYYFASA  520 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~------------------t~~~~~~~~~h~~~V~~v~~sp~g~~l~sg  520 (711)
                      |.+.|.|+.|++||++||+||+|+.|.||...                  .|+++..+.+|...|.+++|+|++.+++++
T Consensus        68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~  147 (942)
T KOG0973|consen   68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV  147 (942)
T ss_pred             ccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe
Confidence            99999999999999999999999999999864                  356888999999999999999999999999


Q ss_pred             ECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCC------CCeEEEEE
Q psy14440        521 GHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHK------APVYALSF  594 (711)
Q Consensus       521 s~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~------~~I~~la~  594 (711)
                      +.|++|.+|+..+.+.+..+.+|.+.|..+.|.|-|+|||+-++|++|+||++.+....+.+.++-      .-+..+.|
T Consensus       148 s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSW  227 (942)
T KOG0973|consen  148 SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSW  227 (942)
T ss_pred             cccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeeccc
Confidence            999999999999999999999999999999999999999999999999999988877887776543      35788999


Q ss_pred             ecCCCEEEEEeC----CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeC------C-------CC----EEEEEeCCCcEE
Q psy14440        595 SVCGRFLASAGG----DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSR------D-------GN----ILASSGQDCSVK  653 (711)
Q Consensus       595 spdg~~Lasgs~----Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fsp------d-------g~----~Lasgs~Dg~V~  653 (711)
                      ||||++|+++..    -.++.|.+-.+.+.-..+-||.+++..+.|+|      .       ++    .+|+||.|++|.
T Consensus       228 SPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlS  307 (942)
T KOG0973|consen  228 SPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLS  307 (942)
T ss_pred             CCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEE
Confidence            999999998742    34789999888888899999999999999998      1       11    789999999999


Q ss_pred             EEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeee
Q psy14440        654 LWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILL  708 (711)
Q Consensus       654 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~ll  708 (711)
                      ||.......                      ++....--..+|..++||+||..|
T Consensus       308 VW~T~~~RP----------------------l~vi~~lf~~SI~DmsWspdG~~L  340 (942)
T KOG0973|consen  308 VWNTALPRP----------------------LFVIHNLFNKSIVDMSWSPDGFSL  340 (942)
T ss_pred             EEecCCCCc----------------------hhhhhhhhcCceeeeeEcCCCCeE
Confidence            999854322                      122233345688888888887654

>KOG0265|consensus

Probab=99.96  E-value=4e-28  Score=238.99  Aligned_cols=245  Identities=21%  Similarity=0.327  Sum_probs=221.3

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      +.++.+|.+.|..+.|..|++.|++++.|.+|+.||.+                               +++.++.+++|
T Consensus        83 ~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~-------------------------------tG~~~rk~k~h  131 (338)
T KOG0265|consen   83 FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE-------------------------------TGKRIRKHKGH  131 (338)
T ss_pred             eeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc-------------------------------cceeeehhccc
Confidence            44677999999999999999999999999999999984                               66778899999


Q ss_pred             cCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeE
Q psy14440        460 EGPVRKLSFSPDRS-LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLR  538 (711)
Q Consensus       460 ~~~V~~l~fspdg~-~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~  538 (711)
                      .+-|.++.-+.-|. ++.|++.||++++||+++..+++++. ....++++.|...+..+.+|+-|+.|++||++.+..+.
T Consensus       132 ~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~  210 (338)
T KOG0265|consen  132 TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY  210 (338)
T ss_pred             cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceE
Confidence            99999998555444 66788899999999999999888876 46789999999999999999999999999999999999


Q ss_pred             EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC----CcEEEEeeCCCC----CeEEEEEecCCCEEEEEeCCCcE
Q psy14440        539 LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT----GSHVRLLTGHKA----PVYALSFSVCGRFLASAGGDGNV  610 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~----~~~v~~~~~h~~----~I~~la~spdg~~Lasgs~Dg~I  610 (711)
                      ++.||...|+.+..+++|.++.+-+.|.++++||++-    ..++..|.+|..    ....++|+|+++++.+|+.|..+
T Consensus       211 ~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~v  290 (338)
T KOG0265|consen  211 TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFV  290 (338)
T ss_pred             EeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceE
Confidence            9999999999999999999999999999999999974    466888887643    34567899999999999999999


Q ss_pred             EEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        611 HMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       611 ~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      ++||..+...+..+.||.+.|+.++|+|...+|.+++.|.+|.+=.
T Consensus       291 yvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  291 YVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             EEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            9999999999999999999999999999999999999999998743

>KOG1407|consensus

Probab=99.96  E-value=1.3e-27  Score=231.19  Aligned_cols=265  Identities=22%  Similarity=0.317  Sum_probs=234.3

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee-------------ec-cCccccccccccCCcEEEEEec
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKA-------------MK-SSDQLQDIEMECDDILVRIMDE  447 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~-------------~~-~~~~~~~l~~~~~d~~i~i~d~  447 (711)
                      .+.+|...|.+++|+-+|+.||+|+.|++++||+++..+...             +. .......++..+.+..|++||.
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~   94 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI   94 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence            356788899999999999999999999999999997654221             11 1223445778888999999999


Q ss_pred             CCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEE
Q psy14440        448 RNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMAR  527 (711)
Q Consensus       448 ~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~  527 (711)
                      ..++.+.......+.| -+.|+|+|.+++.++.|..|...|.++.+.+...+ ....+..++|+.+++.|+..+..|+|.
T Consensus        95 r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen   95 RSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             ccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence            9999988877655554 57899999999999999999999999888877765 456778899998888888888889999


Q ss_pred             EEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC
Q psy14440        528 LWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       528 lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D  607 (711)
                      |...-..+++..+..|.....||.|+|+|+|+|+|+.|..|.+||+..--|+|.|.-+.-+|..+.||.||++||+|++|
T Consensus       173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED  252 (313)
T KOG1407|consen  173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED  252 (313)
T ss_pred             EEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC
Q psy14440        608 GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQD  649 (711)
Q Consensus       608 g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D  649 (711)
                      ..|-|=++.+|..+..+. +.++..+++|+|...+||-++.|
T Consensus       253 h~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  253 HFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             ceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            999999999999999887 67888999999999999988765

>KOG1446|consensus

Probab=99.96  E-value=6.1e-27  Score=233.00  Aligned_cols=271  Identities=19%  Similarity=0.302  Sum_probs=229.2

Q ss_pred             EecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCC
Q psy14440        383 LLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGP  462 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~  462 (711)
                      |....+.|+++.|+.+|.+|++++.|.+|+|||..                               +++..+++..+.-.
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~-------------------------------~g~~~~ti~skkyG   58 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSL-------------------------------SGKQVKTINSKKYG   58 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcC-------------------------------CCceeeEeeccccc
Confidence            34467899999999999999999999899999874                               45566677777778


Q ss_pred             EEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEe
Q psy14440        463 VRKLSFSPDRSLLLSCSQ--DNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF  540 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s~--Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~  540 (711)
                      |..++|......++.++.  |.+||..++.+.+.++.+.||...|.+++.+|-+..|++++.|++|++||++..++...+
T Consensus        59 ~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l  138 (311)
T KOG1446|consen   59 VDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL  138 (311)
T ss_pred             ccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence            888999887777777776  889999999999999999999999999999999999999999999999999987777666


Q ss_pred             ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC--cEEEEee---CCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q psy14440        541 VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG--SHVRLLT---GHKAPVYALSFSVCGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       541 ~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~--~~v~~~~---~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl  615 (711)
                      .  ...-..++|.|.|-++|++...+.|++||++.-  ....+|.   +.....+.+.||+||++|+.++..+.+++.|.
T Consensus       139 ~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA  216 (311)
T KOG1446|consen  139 N--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA  216 (311)
T ss_pred             e--cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence            4  344457899999999999998889999999864  3344443   34678999999999999999999999999999


Q ss_pred             CCCeEEEEeeCCCCCE---EEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeeccc-
Q psy14440        616 SNGHLLTLLTGHTDVV---RALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKT-  691 (711)
Q Consensus       616 ~sg~~i~~l~~h~~~V---~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t-  691 (711)
                      -+|..+..+.++...-   -+.+|+|||+++++|+.||+|.+|++++                       +..+..+.+ 
T Consensus       217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t-----------------------g~~v~~~~~~  273 (311)
T KOG1446|consen  217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET-----------------------GKKVAVLRGP  273 (311)
T ss_pred             cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC-----------------------CcEeeEecCC
Confidence            9999999998776432   5778999999999999999999999964                       333455666 


Q ss_pred             CCcceEEEEEccCCeeee
Q psy14440        692 KASPLLHLIFSRRNILLR  709 (711)
Q Consensus       692 ~~~pV~~v~Fs~~n~lla  709 (711)
                      +.+++.+++|+|+-..+|
T Consensus       274 ~~~~~~~~~fnP~~~mf~  291 (311)
T KOG1446|consen  274 NGGPVSCVRFNPRYAMFV  291 (311)
T ss_pred             CCCCccccccCCceeeee
Confidence            577889999999877666

>KOG0306|consensus

Probab=99.96  E-value=1.1e-27  Score=259.50  Aligned_cols=317  Identities=23%  Similarity=0.390  Sum_probs=261.8

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------eeeeccCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-----------LKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-----------~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      ..|+|+.-++|.-+||+|..||.|+||++.+..           +..+.+...+..++.++.|+.|.+||.-...-...+
T Consensus        66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL  145 (888)
T KOG0306|consen   66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL  145 (888)
T ss_pred             ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe
Confidence            579999999999999999999999999997543           334556667888999999999999999888889999


Q ss_pred             ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC---
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS---  533 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~---  533 (711)
                      .||...|+..-|..+.++|+++|.|+.|++||+.+..|..+.-.|.+.||.+++.+  +.+++++.|+.+++|++..   
T Consensus       146 ~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D  223 (888)
T KOG0306|consen  146 RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDD  223 (888)
T ss_pred             ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccc
Confidence            99999999999999889999999999999999999999999999999999999986  6899999999999998710   


Q ss_pred             --------------------------------------------------------------------------------
Q psy14440        534 --------------------------------------------------------------------------------  533 (711)
Q Consensus       534 --------------------------------------------------------------------------------  533 (711)
                                                                                                      
T Consensus       224 ~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v  303 (888)
T KOG0306|consen  224 EKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDV  303 (888)
T ss_pred             cccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccch
Confidence                                                                                            


Q ss_pred             -----------------------------Cce---------------------e---------EEeecCCCCeeEEEEcC
Q psy14440        534 -----------------------------YHP---------------------L---------RLFVGHYSDVDCVQFHP  554 (711)
Q Consensus       534 -----------------------------~~~---------------------~---------~~~~~h~~~V~~v~~sp  554 (711)
                                                   +..                     .         ..+.||.++|.+++++.
T Consensus       304 ~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~  383 (888)
T KOG0306|consen  304 EKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS  383 (888)
T ss_pred             hhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec
Confidence                                         000                     0         11236888899999997


Q ss_pred             CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEE
Q psy14440        555 NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRAL  634 (711)
Q Consensus       555 ~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl  634 (711)
                      +...+++|+ .+.|++|+..+.+|++++..  +.+.+..|-|.++++++|...|.+.+||+.+...+.++++|.+.|+++
T Consensus       384 d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi  460 (888)
T KOG0306|consen  384 DSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSI  460 (888)
T ss_pred             CceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeee
Confidence            776666665 67899999999999999974  378899999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcccc-----------------cccccccccc--------------cccc
Q psy14440        635 CFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEV-----------------NLSHSADIKN--------------SSLA  683 (711)
Q Consensus       635 ~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~-----------------~~~~~~~~~~--------------~~~~  683 (711)
                      +.+||+..+++||.|.+|++||+.-.....++...                 -.+.+++.+.              -.+-
T Consensus       461 ~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl  540 (888)
T KOG0306|consen  461 SLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL  540 (888)
T ss_pred             eecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce
Confidence            99999999999999999999998765442221100                 0011111100              0111


Q ss_pred             ceeeecccCCcceEEEEEccCCeeee
Q psy14440        684 YLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       684 ~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      ..-.++++|+-||.++..|+|+.+++
T Consensus       541 KFflsLYGHkLPV~smDIS~DSkliv  566 (888)
T KOG0306|consen  541 KFFLSLYGHKLPVLSMDISPDSKLIV  566 (888)
T ss_pred             eeeeeecccccceeEEeccCCcCeEE
Confidence            22245788999999999999998888

>KOG0772|consensus

Probab=99.96  E-value=4.9e-28  Score=252.45  Aligned_cols=283  Identities=19%  Similarity=0.303  Sum_probs=229.9

Q ss_pred             CCceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc----------------eeeeccCccccccccccC
Q psy14440        375 LPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK----------------LKAMKSSDQLQDIEMECD  438 (711)
Q Consensus       375 lps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~----------------~~~~~~~~~~~~l~~~~~  438 (711)
                      +|-.+-..+.+|...|.++++.+.|..|++|+.|-+|++||+.+..                +..+.++.....|.+.+.
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg  234 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG  234 (641)
T ss_pred             CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence            5777788899999999999999999999999999999999996532                344555666667777777


Q ss_pred             CcEEEEEecCCCeeEE------------EeecccCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe-EEEEEe-----
Q psy14440        439 DILVRIMDERNAETTR------------TLVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSLLLWR-CLVVYK-----  499 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~------------~l~~h~~~V~~l~fspdg~-~L~s~s~Dg~V~iwdl~t~~-~~~~~~-----  499 (711)
                      ....+++|....+...            ...||...++|.+|+|+.+ .+++|+.||++|+||+...+ .+.+++     
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence            7778888865544433            3458999999999999764 79999999999999996533 333333     


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc--e-eEEeecCCC--CeeEEEEcCCCCEEEEEEcCCcEEEEECC
Q psy14440        500 GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH--P-LRLFVGHYS--DVDCVQFHPNSNYVATGSSDRTIRLWDCV  574 (711)
Q Consensus       500 ~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~--~-~~~~~~h~~--~V~~v~~sp~~~~latgs~Dg~I~iwD~~  574 (711)
                      +..-+++.++|+++|+.||+|+.||.|.+|+.....  + ...-..|..  .|+||.|+++|++|++-+.|+++++||++
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            335578999999999999999999999999975432  1 223345776  89999999999999999999999999998


Q ss_pred             CC-cEEEEeeCC--CCCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEE
Q psy14440        575 TG-SHVRLLTGH--KAPVYALSFSVCGRFLASAGG------DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILAS  645 (711)
Q Consensus       575 ~~-~~v~~~~~h--~~~I~~la~spdg~~Lasgs~------Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Las  645 (711)
                      .. +++....+-  .-.-+.++|||+.++|++|..      .|++.+||..+-..+..+...+..|..+.|+|.-+.|..
T Consensus       395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~  474 (641)
T KOG0772|consen  395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFA  474 (641)
T ss_pred             ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheee
Confidence            75 445555542  335678899999999999863      578999999999999998877888999999999888999


Q ss_pred             EeCCCcEEEEeC
Q psy14440        646 SGQDCSVKLWDF  657 (711)
Q Consensus       646 gs~Dg~V~iWdl  657 (711)
                      |+.||+++||-=
T Consensus       475 gsgdG~~~vyYd  486 (641)
T KOG0772|consen  475 GSGDGTAHVYYD  486 (641)
T ss_pred             ecCCCceEEEEC
Confidence            999999998743

>KOG0274|consensus

Probab=99.96  E-value=7.1e-28  Score=269.26  Aligned_cols=249  Identities=29%  Similarity=0.460  Sum_probs=226.8

Q ss_pred             CceEEEE-EecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEE
Q psy14440        376 PSIACYT-LLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTR  454 (711)
Q Consensus       376 ps~~~~t-l~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  454 (711)
                      ....+.+ +.+|.+.|.+++|..-+.+|++|+.|.+++|||.                               .++...+
T Consensus       237 ~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~-------------------------------~sg~C~~  285 (537)
T KOG0274|consen  237 NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC-------------------------------STGECTH  285 (537)
T ss_pred             cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec-------------------------------CCCcEEE
Confidence            3455666 9999999999999998899999999999999997                               4677889


Q ss_pred             EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       455 ~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      .+.+|.+.|.++...  +..+++||.|.+|++|++.++.++..+.+|..+|.++..+  +.++++|+.|++|++|+..++
T Consensus       286 ~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~  361 (537)
T KOG0274|consen  286 SLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG  361 (537)
T ss_pred             EecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc
Confidence            999999999999874  5578889999999999999999999999999999999998  779999999999999999999


Q ss_pred             ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-cEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy14440        535 HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG-SHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW  613 (711)
Q Consensus       535 ~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~-~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iw  613 (711)
                      +++..+.+|...|.++.+... +++++|+.|++|++||+.+. +++.++.+|.+-+.++.+.  +++|++++.||+|++|
T Consensus       362 ~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~aD~~Ik~W  438 (537)
T KOG0274|consen  362 KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSSADGTIKLW  438 (537)
T ss_pred             eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEeccccccEEEe
Confidence            999999999999999988755 89999999999999999999 9999999999999777654  8899999999999999


Q ss_pred             ECCCCeEEEEeeC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q psy14440        614 DLSNGHLLTLLTG-HTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEV  664 (711)
Q Consensus       614 Dl~sg~~i~~l~~-h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  664 (711)
                      |..+++++..+.+ |.+.|..+++.  ...+++++.||++++||++......
T Consensus       439 D~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  439 DAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             ecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence            9999999999998 67889988886  4678889999999999999866543

>KOG0282|consensus

Probab=99.96  E-value=2.9e-29  Score=260.72  Aligned_cols=231  Identities=31%  Similarity=0.551  Sum_probs=205.0

Q ss_pred             CeeEEEeecccCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEE
Q psy14440        450 AETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLL-WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMAR  527 (711)
Q Consensus       450 ~~~~~~l~~h~~~V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t-~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~  527 (711)
                      .+.+..+.||+..|+++.|.| .+.+|++|+.|+.|+||++.. +.++++|.+|..+|.+++|+.+|..|+++|.|+.++
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK  283 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK  283 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence            355788999999999999999 889999999999999999966 899999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEeecCCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeC
Q psy14440        528 LWATDSYHPLRLFVGHYSDVDCVQFHPNS-NYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       528 lwd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~  606 (711)
                      +||+++|+++..|. ....++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|++++++++
T Consensus       284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD  362 (503)
T KOG0282|consen  284 LWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD  362 (503)
T ss_pred             eeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence            99999999998885 34568999999987 88999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEECCCCeE--------------------------------EE--------------EeeCCC--CCEEEEEEeC
Q psy14440        607 DGNVHMWDLSNGHL--------------------------------LT--------------LLTGHT--DVVRALCFSR  638 (711)
Q Consensus       607 Dg~I~iwDl~sg~~--------------------------------i~--------------~l~~h~--~~V~sl~fsp  638 (711)
                      |++++||+.+.+-.                                +.              .++||.  +.-..+.|||
T Consensus       363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp  442 (503)
T KOG0282|consen  363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP  442 (503)
T ss_pred             CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence            99999999654211                                11              134564  4456789999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccC
Q psy14440        639 DGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRR  704 (711)
Q Consensus       639 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~  704 (711)
                      ||.+|++|+.||.|.+||.++                       ..++..+++|..++..+.|.|-
T Consensus       443 DG~~l~SGdsdG~v~~wdwkt-----------------------~kl~~~lkah~~~ci~v~wHP~  485 (503)
T KOG0282|consen  443 DGRTLCSGDSDGKVNFWDWKT-----------------------TKLVSKLKAHDQPCIGVDWHPV  485 (503)
T ss_pred             CCCeEEeecCCccEEEeechh-----------------------hhhhhccccCCcceEEEEecCC
Confidence            999999999999999999875                       3445678889999999999884

>KOG0305|consensus

Probab=99.96  E-value=5.1e-28  Score=261.26  Aligned_cols=240  Identities=30%  Similarity=0.494  Sum_probs=217.1

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec-ccCCEEE
Q psy14440        387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG-HEGPVRK  465 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~-h~~~V~~  465 (711)
                      .+.|+++.|+++|++||+|..+|.|.|||...                               .+.++.+.+ |.+.|-+
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-------------------------------~k~~~~~~~~h~~rvg~  265 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-------------------------------QKKTRTLRGSHASRVGS  265 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhh-------------------------------ccccccccCCcCceeEE
Confidence            78999999999999999999999999999853                               334455666 9999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-EecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCC
Q psy14440        466 LSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV-YKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHY  544 (711)
Q Consensus       466 l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~-~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~  544 (711)
                      ++|+  +..+.+|+.|+.|..+|++..+.... +.+|...|..++|++++.++|+|+.|+.+.|||.....++..+..|.
T Consensus       266 laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~  343 (484)
T KOG0305|consen  266 LAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHT  343 (484)
T ss_pred             Eecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccc
Confidence            9997  67899999999999999988776665 88999999999999999999999999999999998889999999999


Q ss_pred             CCeeEEEEcC-CCCEEEEEE--cCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEE--eCCCcEEEEECCCCe
Q psy14440        545 SDVDCVQFHP-NSNYVATGS--SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASA--GGDGNVHMWDLSNGH  619 (711)
Q Consensus       545 ~~V~~v~~sp-~~~~latgs--~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasg--s~Dg~I~iwDl~sg~  619 (711)
                      +.|.+++|+| ....||+|+  .|++|++||+.+|..+..+. ..+.|.+|.|++..+-|+++  ..++.|.||+..+.+
T Consensus       344 aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~  422 (484)
T KOG0305|consen  344 AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK  422 (484)
T ss_pred             eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc
Confidence            9999999999 677899875  59999999999999988876 46789999999998777765  356799999999999


Q ss_pred             EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        620 LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       620 ~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      .+..+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus       423 ~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  423 LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            99999999999999999999999999999999999998653

>KOG0313|consensus

Probab=99.96  E-value=7.4e-28  Score=243.50  Aligned_cols=254  Identities=24%  Similarity=0.406  Sum_probs=216.7

Q ss_pred             CceEEEEEecCCCceEEEEECCCC---CEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCee
Q psy14440        376 PSIACYTLLNARQQVTCAEISEDV---SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAET  452 (711)
Q Consensus       376 ps~~~~tl~~h~~~V~~l~fs~dg---~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  452 (711)
                      -.-+..++.||.+.|.+++|--..   ..|++++.|.++++|.++.....                           .+.
T Consensus       133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~---------------------------~~~  185 (423)
T KOG0313|consen  133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK---------------------------VKA  185 (423)
T ss_pred             CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh---------------------------hhH
Confidence            345778899999999988886433   35999999999999998654321                           112


Q ss_pred             EEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-------------------------CCeEEEEEecCCCCEEE
Q psy14440        453 TRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL-------------------------LWRCLVVYKGHGHPVWD  507 (711)
Q Consensus       453 ~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~-------------------------t~~~~~~~~~h~~~V~~  507 (711)
                      +....||.+.|-+++..++|..+++||.|.+|.||+..                         +...+.++.||..+|.+
T Consensus       186 ~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~  265 (423)
T KOG0313|consen  186 LKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS  265 (423)
T ss_pred             HhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceee
Confidence            23334999999999999999999999999999999931                         23456788999999999


Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc---EEEEeeC
Q psy14440        508 IKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS---HVRLLTG  584 (711)
Q Consensus       508 v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~---~v~~~~~  584 (711)
                      |.|++ ...+++++.|.+|+.||+.++..+..+.+ ...++|+..++..++|++|+.|..||+||-+++.   ....|.|
T Consensus       266 V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g  343 (423)
T KOG0313|consen  266 VVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG  343 (423)
T ss_pred             EEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec
Confidence            99998 56899999999999999999988877765 4568999999999999999999999999998763   3567889


Q ss_pred             CCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCe-EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        585 HKAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNGH-LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       585 h~~~I~~la~spdg~-~Lasgs~Dg~I~iwDl~sg~-~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      |++.|.++.|+|... .|++|+.||++++||+++.+ .+..+.+|...|.++.|+ ++..+++||.|++|+|+.-..
T Consensus       344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence            999999999999654 67899999999999999987 899999999999999998 567999999999999987554

>KOG0973|consensus

Probab=99.96  E-value=7.6e-28  Score=271.73  Aligned_cols=267  Identities=24%  Similarity=0.368  Sum_probs=225.4

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      +.+...|.+.|+|+.||+||++||+|++|+.|.||.........          ..++..+.   -+.+..+....+.+|
T Consensus        62 l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~----------~fgs~g~~---~~vE~wk~~~~l~~H  128 (942)
T KOG0973|consen   62 LCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGT----------VFGSTGGA---KNVESWKVVSILRGH  128 (942)
T ss_pred             heeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcc----------cccccccc---cccceeeEEEEEecC
Confidence            34678899999999999999999999999999999986411000          01111111   123456678899999


Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEE
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL  539 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~  539 (711)
                      .+.|..++|+|++.+|+++|.|++|.|||..+++.+.++++|.+.|-.+.|.|-|+|||+-+.|++|++|.+.+....+.
T Consensus       129 ~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~  208 (942)
T KOG0973|consen  129 DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS  208 (942)
T ss_pred             CCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888777777


Q ss_pred             eecCCC------CeeEEEEcCCCCEEEEEEc----CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecC------------
Q psy14440        540 FVGHYS------DVDCVQFHPNSNYVATGSS----DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVC------------  597 (711)
Q Consensus       540 ~~~h~~------~V~~v~~sp~~~~latgs~----Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spd------------  597 (711)
                      +.++..      -+..+.|+|||.||++...    -.++.|.+-.+.+.-..|.||.+++.++.|+|.            
T Consensus       209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~  288 (942)
T KOG0973|consen  209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST  288 (942)
T ss_pred             eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence            665433      4778999999999998653    347899998888888899999999999999872            


Q ss_pred             -CC----EEEEEeCCCcEEEEECCCCeEEEEee-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        598 -GR----FLASAGGDGNVHMWDLSNGHLLTLLT-GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       598 -g~----~Lasgs~Dg~I~iwDl~sg~~i~~l~-~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                       +.    .+|+|+.|++|.||.....+.+.... -....|.+++|++||-.|+.||.||+|.+..+..
T Consensus       289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence             11    67899999999999998877765553 2356899999999999999999999999999975

>KOG0278|consensus

Probab=99.96  E-value=1.4e-28  Score=236.09  Aligned_cols=276  Identities=18%  Similarity=0.259  Sum_probs=235.3

Q ss_pred             EEecCCCceEEEEEC---CCCCEEEEEeCCCeEEEEeCCCCceee-----------eccCccccccccccCCcEEEEEec
Q psy14440        382 TLLNARQQVTCAEIS---EDVSILAVGFSESYIKLWSLVPQKLKA-----------MKSSDQLQDIEMECDDILVRIMDE  447 (711)
Q Consensus       382 tl~~h~~~V~~l~fs---~dg~~LatG~~dg~I~vWdl~~~~~~~-----------~~~~~~~~~l~~~~~d~~i~i~d~  447 (711)
                      +.++|...|..++||   |+|-+|++++.||.-.+-+-+++....           .....+....+.++.|-+..+||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            458999999999999   599999999999876665544433211           111122223445667788899999


Q ss_pred             CCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEEecCCCCEEEEEEcCCCCEEEEEECCCeE
Q psy14440        448 RNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR-CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMA  526 (711)
Q Consensus       448 ~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~-~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i  526 (711)
                      -++..+..+. |..-|.+++|+.|.++|++|+.+.-+||||++.-+ ....+.+|.+.|..+.|....+.|++++.|++|
T Consensus        89 ~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV  167 (334)
T KOG0278|consen   89 VTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTV  167 (334)
T ss_pred             hhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence            9998888775 88889999999999999999999999999997644 456788999999999999989999999999999


Q ss_pred             EEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeC
Q psy14440        527 RLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~  606 (711)
                      |+||.+++..+..+. ....|+++.++++|++|.++. .+.|.+||..+...++.+. -...|.+...+|+...+++|+.
T Consensus       168 RLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGge  244 (334)
T KOG0278|consen  168 RLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGE  244 (334)
T ss_pred             EEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc-CccccccccccCCCceEEecCc
Confidence            999999999988875 467899999999998877665 6789999999988888876 4567899999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEe-eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        607 DGNVHMWDLSNGHLLTLL-TGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       607 Dg~I~iwDl~sg~~i~~l-~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      |+.++.||..+|..+..+ ++|.++|.++.|+|||...++||.||+||||.+....
T Consensus       245 d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  245 DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            999999999999999886 8999999999999999999999999999999987543

>KOG0289|consensus

Probab=99.96  E-value=1.7e-27  Score=244.31  Aligned_cols=270  Identities=25%  Similarity=0.389  Sum_probs=234.1

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEE
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLS  467 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~  467 (711)
                      .+++++..++....+++|+.|..+.++|..                               .++.+..+.||...|+.+.
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~-------------------------------s~q~l~~~~Gh~kki~~v~  268 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKP-------------------------------SNQILATLKGHTKKITSVK  268 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecc-------------------------------hhhhhhhccCcceEEEEEE
Confidence            457788888888899999999989888874                               3445667899999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeec--CCC
Q psy14440        468 FSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG--HYS  545 (711)
Q Consensus       468 fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~--h~~  545 (711)
                      |+++...+++++.|..|+||+.....+......|..+|+.+..+|.|.||++++.||+..+.|++++..+.....  ..-
T Consensus       269 ~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v  348 (506)
T KOG0289|consen  269 FHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDV  348 (506)
T ss_pred             eccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccc
Confidence            999999999999999999999988888888899999999999999999999999999999999999988876654  234


Q ss_pred             CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee
Q psy14440        546 DVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLT  625 (711)
Q Consensus       546 ~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~  625 (711)
                      .+++.+|||||..|++|+.||.|+|||+.++..+..|.+|.++|..|+|+.+|-||+++++|+.|++||++.-+.++++.
T Consensus       349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             eeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999988887776


Q ss_pred             CCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccC
Q psy14440        626 GHT-DVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRR  704 (711)
Q Consensus       626 ~h~-~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~  704 (711)
                      ... ..|.+++|...|.+|+.+|.|=.|++++  +.+.                   .-..+..+..+......|.|..+
T Consensus       429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~--k~~k-------------------~W~~~~~~~~~sg~st~v~Fg~~  487 (506)
T KOG0289|consen  429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK--KKTK-------------------SWTEIKELADHSGLSTGVRFGEH  487 (506)
T ss_pred             ccccccceeEEEcCCCCeEEeecceeEEEEEe--cccc-------------------cceeeehhhhcccccceeeeccc
Confidence            433 4799999999999999997765555554  3221                   12334456667788889999999


Q ss_pred             Ceeee
Q psy14440        705 NILLR  709 (711)
Q Consensus       705 n~lla  709 (711)
                      -+++|
T Consensus       488 aq~l~  492 (506)
T KOG0289|consen  488 AQYLA  492 (506)
T ss_pred             ceEEe
Confidence            98888

>KOG0264|consensus

Probab=99.96  E-value=1.1e-27  Score=248.15  Aligned_cols=263  Identities=29%  Similarity=0.468  Sum_probs=219.7

Q ss_pred             CceEEEEEecCCCceEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEE
Q psy14440        376 PSIACYTLLNARQQVTCAEISEDV-SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTR  454 (711)
Q Consensus       376 ps~~~~tl~~h~~~V~~l~fs~dg-~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  454 (711)
                      ..+.++....|.+.|+.+.+-|.. .++|+++..+.|.|||.....-.....                     .....-.
T Consensus       113 ~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~---------------------~~~~Pdl  171 (422)
T KOG0264|consen  113 GKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS---------------------GECRPDL  171 (422)
T ss_pred             cceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc---------------------ccCCCce
Confidence            457777889999999999999865 677888999999999986432111000                     0122345


Q ss_pred             EeecccCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-------eEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCe
Q psy14440        455 TLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLLLW-------RCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDRM  525 (711)
Q Consensus       455 ~l~~h~~~V~~l~fspdg-~~L~s~s~Dg~V~iwdl~t~-------~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~  525 (711)
                      +|.||.+.-++++|++.. -.|++|+.|++|++||+...       .....+.+|...|.+++|++ +...|++++.|+.
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~  251 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK  251 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence            788999988999999854 48999999999999999643       23567899999999999999 5679999999999


Q ss_pred             EEEEECC--CCceeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCC-cEEEEeeCCCCCeEEEEEecC-CCE
Q psy14440        526 ARLWATD--SYHPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTG-SHVRLLTGHKAPVYALSFSVC-GRF  600 (711)
Q Consensus       526 i~lwd~~--~~~~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~-~~v~~~~~h~~~I~~la~spd-g~~  600 (711)
                      +.|||++  +.++.....+|.+.|.|++|+| ++..|||||.|++|++||+|+- +++.++.+|...|.++.|||+ ...
T Consensus       252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etv  331 (422)
T KOG0264|consen  252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETV  331 (422)
T ss_pred             EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCce
Confidence            9999999  5667778889999999999999 6778999999999999999875 468899999999999999996 468


Q ss_pred             EEEEeCCCcEEEEECCCC--------------eEEEEeeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEeCCC
Q psy14440        601 LASAGGDGNVHMWDLSNG--------------HLLTLLTGHTDVVRALCFSRDGN-ILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       601 Lasgs~Dg~I~iwDl~sg--------------~~i~~l~~h~~~V~sl~fspdg~-~Lasgs~Dg~V~iWdl~~  659 (711)
                      ||+++.|+++.|||+..-              +++..-.||.+.|..++|+|+.. .|+|.+.|+.+.||.+..
T Consensus       332 LASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  332 LASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             eEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            899999999999998641              34566779999999999999765 678899999999999974

>KOG0316|consensus

Probab=99.96  E-value=6.1e-28  Score=230.09  Aligned_cols=204  Identities=32%  Similarity=0.571  Sum_probs=190.7

Q ss_pred             eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy14440        452 TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWAT  531 (711)
Q Consensus       452 ~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~  531 (711)
                      ..+.+.+|.++|.++.|+-||++.++|+.|.+|++|+...+.++++|.+|...|.+++.+.++..|++|+.|+.+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC--cEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCc
Q psy14440        532 DSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG--SHVRLLTGHKAPVYALSFSVCGRFLASAGGDGN  609 (711)
Q Consensus       532 ~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~--~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~  609 (711)
                      .+++.++.|.+|.+.|+.++|+.+...+++|+.|.++++||.++.  ++++++......|.++..+  +..|++|+.||+
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt  166 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT  166 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence            999999999999999999999999999999999999999999865  6788888888899999886  778999999999


Q ss_pred             EEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        610 VHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       610 I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ++.||++.|+....+-+|  +|++++|++||+.++.++.|++||+.|-.+
T Consensus       167 vRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~t  214 (307)
T KOG0316|consen  167 VRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKET  214 (307)
T ss_pred             EEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccch
Confidence            999999999988776654  699999999999999999999999998654

>KOG0643|consensus

Probab=99.96  E-value=2.3e-27  Score=230.09  Aligned_cols=255  Identities=22%  Similarity=0.341  Sum_probs=216.7

Q ss_pred             EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       455 ~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      .+.||..+++.+.++.+|.+|++|+.|.+..||=..+|+.+.+|.||.+.|||++.+.+.+++++|+.|.++++||+.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46789999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             ceeEEeecCCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECC-------CCcEEEEeeCCCCCeEEEEEecCCCEEE
Q psy14440        535 HPLRLFVGHYSDVDCVQFHPNSNYVATGSSD-----RTIRLWDCV-------TGSHVRLLTGHKAPVYALSFSVCGRFLA  602 (711)
Q Consensus       535 ~~~~~~~~h~~~V~~v~~sp~~~~latgs~D-----g~I~iwD~~-------~~~~v~~~~~h~~~I~~la~spdg~~La  602 (711)
                      +.+..+. ....|..+.|+..|++++.++.+     +.|.++|++       ..+++..+..+.+.++.+-|++.+++|+
T Consensus        85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii  163 (327)
T KOG0643|consen   85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII  163 (327)
T ss_pred             cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence            9999886 46789999999999998887653     579999998       4456777888889999999999999999


Q ss_pred             EEeCCCcEEEEECCCCe-EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCc--c-ccccc------
Q psy14440        603 SAGGDGNVHMWDLSNGH-LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGT--E-EVNLS------  672 (711)
Q Consensus       603 sgs~Dg~I~iwDl~sg~-~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~--~-~~~~~------  672 (711)
                      +|.+||.|.+||+++|+ .+...+.|...|++|++++|..++++||.|.+-++||+.++.-...-  + .+|.+      
T Consensus       164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~  243 (327)
T KOG0643|consen  164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLL  243 (327)
T ss_pred             EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceeccccc
Confidence            99999999999999984 56667889999999999999999999999999999999876532110  0 01100      


Q ss_pred             ------ccc---c--------cccc------cccceeeecccCCcceEEEEEccCCeeee-C
Q psy14440        673 ------HSA---D--------IKNS------SLAYLVRSYKTKASPLLHLIFSRRNILLR-G  710 (711)
Q Consensus       673 ------~~~---~--------~~~~------~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-G  710 (711)
                            ..+   +        .++.      -....+..+++|-.||.+|+|+|+|...| |
T Consensus       244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSG  305 (327)
T KOG0643|consen  244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSG  305 (327)
T ss_pred             ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccC
Confidence                  000   0        0000      02334678999999999999999999988 5

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=9.6e-27  Score=259.75  Aligned_cols=234  Identities=18%  Similarity=0.273  Sum_probs=194.8

Q ss_pred             EEecCCCceEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        382 TLLNARQQVTCAEISE-DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~-dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      .+.+|.+.|++++|+| ++++||+|+.||+|+||++.+..+..                        .....+..+.+|.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~------------------------~~~~~l~~L~gH~  125 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ------------------------NISDPIVHLQGHT  125 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc------------------------ccCcceEEecCCC
Confidence            3679999999999999 88999999999999999986432110                        1123456788999


Q ss_pred             CCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEE
Q psy14440        461 GPVRKLSFSPDR-SLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL  539 (711)
Q Consensus       461 ~~V~~l~fspdg-~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~  539 (711)
                      ..|.+++|+|++ ++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+++|.+|++++.|++|++||+++++.+..
T Consensus       126 ~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t  205 (493)
T PTZ00421        126 KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS  205 (493)
T ss_pred             CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE
Confidence            999999999985 6999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCC-eeEEEEcCCCCEEEEEE----cCCcEEEEECCCCc-EEEEeeCC-CCCeEEEEEecCCCEEEEEe-CCCcEE
Q psy14440        540 FVGHYSD-VDCVQFHPNSNYVATGS----SDRTIRLWDCVTGS-HVRLLTGH-KAPVYALSFSVCGRFLASAG-GDGNVH  611 (711)
Q Consensus       540 ~~~h~~~-V~~v~~sp~~~~latgs----~Dg~I~iwD~~~~~-~v~~~~~h-~~~I~~la~spdg~~Lasgs-~Dg~I~  611 (711)
                      +.+|.+. +..+.|++++..+++++    .|++|++||+++.. .+.....+ ...+....|++++++|++|+ .||.|+
T Consensus       206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Ir  285 (493)
T PTZ00421        206 VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIR  285 (493)
T ss_pred             EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEE
Confidence            9888765 45678999888877654    47899999998764 34444333 34566678999999999887 599999


Q ss_pred             EEECCCCeEEEEeeC-CCCCEEEEEEeCC
Q psy14440        612 MWDLSNGHLLTLLTG-HTDVVRALCFSRD  639 (711)
Q Consensus       612 iwDl~sg~~i~~l~~-h~~~V~sl~fspd  639 (711)
                      +||+.+++.+..... +...+.+++|.|.
T Consensus       286 iwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        286 CFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             EEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            999999998776654 3456788888874

>KOG0301|consensus

Probab=99.96  E-value=3.1e-27  Score=254.54  Aligned_cols=268  Identities=22%  Similarity=0.408  Sum_probs=231.5

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee--------------eccC-ccccccccccCCcEEEE
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKA--------------MKSS-DQLQDIEMECDDILVRI  444 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~--------------~~~~-~~~~~l~~~~~d~~i~i  444 (711)
                      ...+.+|...|..+++..+. .+++|+.||++++|+-.++....              +... .+...+..++.|..+.+
T Consensus         7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v   85 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV   85 (745)
T ss_pred             EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence            45689999999888876654 88899999999999985544222              1111 23344777889999999


Q ss_pred             EecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Q psy14440        445 MDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDR  524 (711)
Q Consensus       445 ~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg  524 (711)
                      |...+......|.||...|.|++...++. ++|||.|.++++|-.  +++...+.+|...||+++.-|.+ .++|||.|+
T Consensus        86 ~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDK  161 (745)
T KOG0301|consen   86 FKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADK  161 (745)
T ss_pred             EecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcc
Confidence            99999999999999999999999888887 999999999999976  46677799999999999999987 899999999


Q ss_pred             eEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEE
Q psy14440        525 MARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASA  604 (711)
Q Consensus       525 ~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasg  604 (711)
                      +|++|.-  ++.+++|.+|...|..+++-++ ..+++++.||.|++|++ +|.++..+.||+.-|++++...++..++++
T Consensus       162 tIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~  237 (745)
T KOG0301|consen  162 TIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST  237 (745)
T ss_pred             eeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe
Confidence            9999976  6789999999999999999865 46788999999999998 899999999999999999988889999999


Q ss_pred             eCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        605 GGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       605 s~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ++|++++||+..  .+.+.+.-.+..|+++++-.+|. +++||.||.||||....
T Consensus       238 gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  238 GEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             cCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            999999999965  77788876667899999988887 56688899999999874

>KOG0310|consensus

Probab=99.96  E-value=6.9e-27  Score=243.54  Aligned_cols=269  Identities=21%  Similarity=0.292  Sum_probs=217.6

Q ss_pred             CCCceEEEEECCCCCE-EEEEeCCCeEEEEeCCCCce-----------eeeccCccccccccccCCcEEEEEecCCCeeE
Q psy14440        386 ARQQVTCAEISEDVSI-LAVGFSESYIKLWSLVPQKL-----------KAMKSSDQLQDIEMECDDILVRIMDERNAETT  453 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~-LatG~~dg~I~vWdl~~~~~-----------~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  453 (711)
                      -.+.|++++|||..-+ +|+.+ .-.+.||+..+...           ....+..++..++.+...|.|+++|..+...+
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL  103 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL  103 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence            3456777777774432 23322 23477777654321           22334455666777777777777776665667


Q ss_pred             EEeecccCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEC
Q psy14440        454 RTLVGHEGPVRKLSFSPD-RSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMARLWAT  531 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspd-g~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~  531 (711)
                      +.+.+|+.+|..+.|+++ +..|++|+.|+.+++||+.+......+.+|...|.|.+|+| +++.++|||.||+|++||+
T Consensus       104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt  183 (487)
T KOG0310|consen  104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT  183 (487)
T ss_pred             HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence            888999999999999995 55788899999999999999888778899999999999999 5679999999999999999


Q ss_pred             CCC-ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEeeCCCCCeEEEEEecCCCEEEEEeCCCc
Q psy14440        532 DSY-HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH-VRLLTGHKAPVYALSFSVCGRFLASAGGDGN  609 (711)
Q Consensus       532 ~~~-~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~-v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~  609 (711)
                      +.. ..+..+ .|..+|..+.+-|.|..||+++ ...|++||+.+|.. +..+..|...|+|+++..++..|++|+-||.
T Consensus       184 R~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~  261 (487)
T KOG0310|consen  184 RSLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH  261 (487)
T ss_pred             ccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc
Confidence            987 444444 6999999999999999999987 56899999996654 4455569999999999999999999999999


Q ss_pred             EEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        610 VHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       610 I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      |++||+.+.+.+..+. ..++|.+++.++++..++.|..||.+-+=+..
T Consensus       262 VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  262 VKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             eEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhh
Confidence            9999999999988887 46789999999999999999999998877443

>KOG0277|consensus

Probab=99.96  E-value=1.6e-27  Score=229.62  Aligned_cols=202  Identities=27%  Similarity=0.463  Sum_probs=180.1

Q ss_pred             ccCCEEEEEEcCCC-CEEEEEeCCCeEEEEECC-CCeEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCc
Q psy14440        459 HEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLL-LWRCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMARLWATDSYH  535 (711)
Q Consensus       459 h~~~V~~l~fspdg-~~L~s~s~Dg~V~iwdl~-t~~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~~~~~  535 (711)
                      -...++.++|+++. +.+++|+.||++++||+. ....+..++.|...|.++.|++ .+..++++|.|++|++|+....+
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            35679999999854 578899999999999974 3457888999999999999998 55688899999999999999999


Q ss_pred             eeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEec-CCCEEEEEeCCCcEEEE
Q psy14440        536 PLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSV-CGRFLASAGGDGNVHMW  613 (711)
Q Consensus       536 ~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~sp-dg~~Lasgs~Dg~I~iw  613 (711)
                      .+++|.||...|...+|+| ..+.++++|.|+++++||++.......+..|...|.|+.|+. +.+.|++|+.|+.|++|
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w  218 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW  218 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence            9999999999999999999 688999999999999999987655556889999999999997 56789999999999999


Q ss_pred             ECCCC-eEEEEeeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEeCCCC
Q psy14440        614 DLSNG-HLLTLLTGHTDVVRALCFSRD-GNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       614 Dl~sg-~~i~~l~~h~~~V~sl~fspd-g~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      |+++- ..+.++.+|.-.|..+.|||. ..+|++++.|-++||||....
T Consensus       219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence            99885 468899999999999999995 468999999999999998753

>KOG0310|consensus

Probab=99.95  E-value=2.1e-27  Score=247.32  Aligned_cols=263  Identities=27%  Similarity=0.405  Sum_probs=221.0

Q ss_pred             eeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q psy14440        423 AMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHG  502 (711)
Q Consensus       423 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~  502 (711)
                      .+.+++.-..-........+.+|+..+....+.+......|++++|..||++|++|...|.|+|||+.+...+..+.+|.
T Consensus        31 sl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~  110 (487)
T KOG0310|consen   31 SLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQ  110 (487)
T ss_pred             eEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhcc
Confidence            34444433333334456678899988888888888888999999999999999999999999999988777888999999


Q ss_pred             CCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCC-cEE
Q psy14440        503 HPVWDIKFSPH-GYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTG-SHV  579 (711)
Q Consensus       503 ~~V~~v~~sp~-g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~-~~v  579 (711)
                      .+|..+.|++. +..|++|+.|+.+++||+.+......+.+|...|.|.+|+| ++..++||+.||+|++||++.. ..+
T Consensus       111 apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v  190 (487)
T KOG0310|consen  111 APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV  190 (487)
T ss_pred             CceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee
Confidence            99999999994 56888999999999999999887668899999999999999 5668999999999999999987 555


Q ss_pred             EEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        580 RLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNG-HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       580 ~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg-~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      ..+. |..+|..+.+-|.|..||+++. ..|+|||+.+| +.+..+..|...|+||++..++..|++||-||.|++||+.
T Consensus       191 ~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t  268 (487)
T KOG0310|consen  191 VELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT  268 (487)
T ss_pred             EEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEcc
Confidence            5655 9999999999999999999976 48999999855 5566666699999999999999999999999999999976


Q ss_pred             CCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee-CC
Q psy14440        659 KLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR-GP  711 (711)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-Ga  711 (711)
                      +.+-                       +.+|. -.+||.+++-++++..++ |+
T Consensus       269 ~~Kv-----------------------v~s~~-~~~pvLsiavs~dd~t~viGm  298 (487)
T KOG0310|consen  269 NYKV-----------------------VHSWK-YPGPVLSIAVSPDDQTVVIGM  298 (487)
T ss_pred             ceEE-----------------------EEeee-cccceeeEEecCCCceEEEec
Confidence            5321                       22222 357999999999988887 64

>KOG0294|consensus

Probab=99.95  E-value=9e-27  Score=230.78  Aligned_cols=246  Identities=21%  Similarity=0.334  Sum_probs=210.1

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      ..+.+..|.+.|+|++.+  +.++|+|+.|-+|+|||+..                               ......+..
T Consensus        35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k-------------------------------~~qlg~ll~   81 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK-------------------------------RKQLGILLS   81 (362)
T ss_pred             ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccc-------------------------------hhhhcceec
Confidence            357788999999999985  68999999999999999853                               334556778


Q ss_pred             ccCCEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q psy14440        459 HEGPVRKLSFSPDRS--LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP  536 (711)
Q Consensus       459 h~~~V~~l~fspdg~--~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~  536 (711)
                      |.+.|+++.|.++-.  .|++|+.||.|.+|+...|.++..+++|.+.|+.++.+|.|+..++.+.|+.+++||+-+++.
T Consensus        82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~  161 (362)
T KOG0294|consen   82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV  161 (362)
T ss_pred             cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence            999999999998765  999999999999999999999999999999999999999999999999999999999988875


Q ss_pred             eEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy14440        537 LRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS  616 (711)
Q Consensus       537 ~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~  616 (711)
                      -..+.- ...-+.|.|+|.|.+++.++.+ .|-+|.+.+....+.+... ..+.|+.|- ++.+|++|++|+.|.+||..
T Consensus       162 a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d  237 (362)
T KOG0294|consen  162 AFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTD  237 (362)
T ss_pred             ceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccC
Confidence            544432 2223459999999999888855 5899998887766655533 456777774 57789999999999999999


Q ss_pred             CCeEEEEeeCCCCCEEEEEE--eCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        617 NGHLLTLLTGHTDVVRALCF--SRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       617 sg~~i~~l~~h~~~V~sl~f--spdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      ++.+...+.+|...|.++.+  .+++.+|+|+|.||.|+|||++...
T Consensus       238 s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  238 SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             CCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence            99999999999999999985  4568899999999999999998653

>KOG0647|consensus

Probab=99.95  E-value=1.3e-26  Score=228.54  Aligned_cols=267  Identities=17%  Similarity=0.269  Sum_probs=217.7

Q ss_pred             CCceEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEE
Q psy14440        387 RQQVTCAEISE-DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRK  465 (711)
Q Consensus       387 ~~~V~~l~fs~-dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~  465 (711)
                      .+.|.+++||| ...++++|+.||+||+|++....                             ...-+....|.++|.+
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-----------------------------~~~~ka~~~~~~PvL~   77 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-----------------------------QLVPKAQQSHDGPVLD   77 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCC-----------------------------cccchhhhccCCCeEE
Confidence            47899999999 66788899999999999985321                             0111445579999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCC--EEEEEECCCeEEEEECCCCceeEEeecC
Q psy14440        466 LSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGY--YFASAGHDRMARLWATDSYHPLRLFVGH  543 (711)
Q Consensus       466 l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~--~l~sgs~Dg~i~lwd~~~~~~~~~~~~h  543 (711)
                      ++|+.||..+++|+.|+.+++||+.+++ +..+..|..+|.++.|-+...  .|+|||.|++++.||++...++..+.. 
T Consensus        78 v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-  155 (347)
T KOG0647|consen   78 VCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-  155 (347)
T ss_pred             EEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-
Confidence            9999999999999999999999999984 556667999999999988655  899999999999999999888887753 


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE-Ee-eCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--e
Q psy14440        544 YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR-LL-TGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNG--H  619 (711)
Q Consensus       544 ~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~-~~-~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg--~  619 (711)
                      ...+.++..  ....++++..++.|.+|+++++.... .. ..-+-.+.||++..|....+.|+-+|++.|..+..+  +
T Consensus       156 PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~  233 (347)
T KOG0647|consen  156 PERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK  233 (347)
T ss_pred             cceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc
Confidence            345666554  34578888999999999998764321 11 123456889999999888899999999999999887  4


Q ss_pred             EEEEeeCCCC---------CEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecc
Q psy14440        620 LLTLLTGHTD---------VVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYK  690 (711)
Q Consensus       620 ~i~~l~~h~~---------~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  690 (711)
                      .-..|+.|..         .|++|+|+|.-..|+++|.||++.+||-..                       ...|.++.
T Consensus       234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda-----------------------r~kLk~s~  290 (347)
T KOG0647|consen  234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA-----------------------RTKLKTSE  290 (347)
T ss_pred             CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh-----------------------hhhhhccC
Confidence            4456666752         478999999988999999999999999543                       33456788


Q ss_pred             cCCcceEEEEEccCCeeee
Q psy14440        691 TKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       691 t~~~pV~~v~Fs~~n~lla  709 (711)
                      ++..||.+..|+++|.++|
T Consensus       291 ~~~qpItcc~fn~~G~ifa  309 (347)
T KOG0647|consen  291 THPQPITCCSFNRNGSIFA  309 (347)
T ss_pred             cCCCccceeEecCCCCEEE
Confidence            8999999999999999998

>KOG0641|consensus

Probab=99.95  E-value=4e-25  Score=209.34  Aligned_cols=266  Identities=22%  Similarity=0.355  Sum_probs=215.6

Q ss_pred             ceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        377 SIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       377 s~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      ...+.+++.-...|.+++|+|.|.+.|+|+...+.+|-..-.-  .......+...              ....-..+.-
T Consensus        22 ~f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l--~~~r~~hea~~--------------~pp~v~~kr~   85 (350)
T KOG0641|consen   22 HFEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPAL--IDLRHAHEAAK--------------QPPSVLCKRN   85 (350)
T ss_pred             ceEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccc--cCccccccccc--------------CCCeEEeeec
Confidence            3445667777889999999999999999999999998765210  00000000000              0001123445


Q ss_pred             ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE-----EEEecCCCCEEEEEEcC----CCCEEEEEE-CCCeE
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCL-----VVYKGHGHPVWDIKFSP----HGYYFASAG-HDRMA  526 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~-----~~~~~h~~~V~~v~~sp----~g~~l~sgs-~Dg~i  526 (711)
                      +.|.+.|+|.+|||+|.+|++|+.|.+|++.-+....+.     ..+..|.+.|.+++|-.    .|..+++++ .|..|
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i  165 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI  165 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence            679999999999999999999999999999877544332     35677999999999965    345677765 57778


Q ss_pred             EEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC--C-----CCCeEEEEEecCCC
Q psy14440        527 RLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG--H-----KAPVYALSFSVCGR  599 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~--h-----~~~I~~la~spdg~  599 (711)
                      ++-|..+++....+.||.+.|.++ ++-++-.+++|+.|.+||+||++-..+++++..  |     .+.|.+++..|.|+
T Consensus       166 y~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr  244 (350)
T KOG0641|consen  166 YITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR  244 (350)
T ss_pred             EEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc
Confidence            888999999999999999999876 345788999999999999999999999988752  2     35799999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        600 FLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       600 ~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      +|++|-.|.+..+||++.++.+..+..|...|.++.|+|...+|++|+.|..|++-|+..
T Consensus       245 ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  245 LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            999999999999999999999999999999999999999999999999999999999864

>KOG0268|consensus

Probab=99.95  E-value=1.2e-27  Score=240.63  Aligned_cols=268  Identities=22%  Similarity=0.358  Sum_probs=229.0

Q ss_pred             EEecCCCceEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        382 TLLNARQQVTCAEISEDV-SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg-~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      .+.+|.++|.|++=+|.. ..+|+|+.||.|+|||+.                               ...+.+++..|.
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls-------------------------------qR~~~~~f~AH~  109 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS-------------------------------QRECIRTFKAHE  109 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehh-------------------------------hhhhhheeeccc
Confidence            458999999999999988 899999999999999985                               345567889999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEe
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF  540 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~  540 (711)
                      |.|.++++..  ..+++++.|.+|+.|.+.. ..+.++.+ .+.+.++.-+..+..|+|||.  .|.|||.....++..+
T Consensus       110 G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sm  183 (433)
T KOG0268|consen  110 GLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSM  183 (433)
T ss_pred             CceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCcccee
Confidence            9999999976  6799999999999999875 46666664 556777877777889999985  5899999999999999


Q ss_pred             ecCCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-
Q psy14440        541 VGHYSDVDCVQFHPNS-NYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNG-  618 (711)
Q Consensus       541 ~~h~~~V~~v~~sp~~-~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg-  618 (711)
                      .-....|.|+.|+|.. ..|++|.+|+.|.+||++++..++.+. -+..-+.|+|+|.+-.+++|++|..++.||++.- 
T Consensus       184 swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~  262 (433)
T KOG0268|consen  184 SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS  262 (433)
T ss_pred             ecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc
Confidence            9888899999999964 567777799999999999999887665 3455678999998888899999999999999874 


Q ss_pred             eEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCC-cceE
Q psy14440        619 HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKA-SPLL  697 (711)
Q Consensus       619 ~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~-~pV~  697 (711)
                      +.+....+|.+.|.+++|||.|+-+++||.|.+||||.++....            .+           .|.|+. ..|+
T Consensus       263 ~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S------------Rd-----------iYhtkRMq~V~  319 (433)
T KOG0268|consen  263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS------------RD-----------IYHTKRMQHVF  319 (433)
T ss_pred             ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc------------hh-----------hhhHhhhheee
Confidence            56888899999999999999999999999999999999876432            11           255543 5899


Q ss_pred             EEEEccCCeeee-C
Q psy14440        698 HLIFSRRNILLR-G  710 (711)
Q Consensus       698 ~v~Fs~~n~lla-G  710 (711)
                      +|.||.|++++. |
T Consensus       320 ~Vk~S~Dskyi~SG  333 (433)
T KOG0268|consen  320 CVKYSMDSKYIISG  333 (433)
T ss_pred             EEEEeccccEEEec
Confidence            999999999998 7

>KOG0641|consensus

Probab=99.95  E-value=1.4e-25  Score=212.40  Aligned_cols=258  Identities=21%  Similarity=0.323  Sum_probs=218.4

Q ss_pred             CCCceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeE
Q psy14440        374 SLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETT  453 (711)
Q Consensus       374 ~lps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  453 (711)
                      .-|++.+..-..|.+.|.|.+||++|.+||+|+.|.+|++.-+.......                         ++ .-
T Consensus        76 ~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~-------------------------~g-~d  129 (350)
T KOG0641|consen   76 QPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA-------------------------TG-HD  129 (350)
T ss_pred             CCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccc-------------------------cC-cc
Confidence            34788898999999999999999999999999999999998764322110                         11 12


Q ss_pred             EEeecccCCEEEEEEcCC----CCEEEEEeC-CCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEE
Q psy14440        454 RTLVGHEGPVRKLSFSPD----RSLLLSCSQ-DNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARL  528 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspd----g~~L~s~s~-Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~l  528 (711)
                      ..+.-|.+.|..++|..+    +..|++++. |..|++-|..+++....+.+|.+.|.++- +-+|-.|++|+.|.+|++
T Consensus       130 le~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirf  208 (350)
T KOG0641|consen  130 LEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRF  208 (350)
T ss_pred             eeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEE
Confidence            356679999999999653    457777654 78888889999999999999999998762 335789999999999999


Q ss_pred             EECCCCceeEEeec-------CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEE
Q psy14440        529 WATDSYHPLRLFVG-------HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFL  601 (711)
Q Consensus       529 wd~~~~~~~~~~~~-------h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~L  601 (711)
                      ||++-..+++++..       ..+.|.+++..|.|+.|++|-.|..+.+||++.++.++.|..|...|.|+.|||...|+
T Consensus       209 wdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yl  288 (350)
T KOG0641|consen  209 WDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYL  288 (350)
T ss_pred             EeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEE
Confidence            99998888877652       23569999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCC----eEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        602 ASAGGDGNVHMWDLSNG----HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       602 asgs~Dg~I~iwDl~sg----~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      .+|+.|..|++-|+...    -.+.....|...+..+.|++..-.+++.+.|.++.+|-+.
T Consensus       289 lt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  289 LTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99999999999998532    2344556788888999999998889999999999999764

>KOG0289|consensus

Probab=99.95  E-value=6.5e-26  Score=232.63  Aligned_cols=247  Identities=24%  Similarity=0.393  Sum_probs=218.5

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      +.++.||...|+.+.|+++...+++++.|..|+||+....                               ......+.|
T Consensus       254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-------------------------------s~~~~~~~h  302 (506)
T KOG0289|consen  254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-------------------------------SEPTSSRPH  302 (506)
T ss_pred             hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-------------------------------cCccccccc
Confidence            3468899999999999999999999999999999997422                               123456679


Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec--CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG--HGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~--h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      .++|+.+..++.|.||++++.||+..+.|++++.++.....  ..-.+++.+|+|||..|.+|+.||.+++||+.+...+
T Consensus       303 ~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~  382 (506)
T KOG0289|consen  303 EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV  382 (506)
T ss_pred             cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc
Confidence            99999999999999999999999999999999998887764  2346899999999999999999999999999999999


Q ss_pred             EEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy14440        538 RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH-KAPVYALSFSVCGRFLASAGGDGNVHMWDLS  616 (711)
Q Consensus       538 ~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h-~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~  616 (711)
                      ..|.+|.+.|..|+|+.||-|||+++.|+.|++||++..+.+.++... ...+.++.|...|.+|++++.|=.|++++-.
T Consensus       383 a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~  462 (506)
T KOG0289|consen  383 AKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKK  462 (506)
T ss_pred             ccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecc
Confidence            999999999999999999999999999999999999998888777643 3479999999999999999888677777633


Q ss_pred             --CCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        617 --NGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       617 --sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                        +.+.+..+..|.+..+++.|.....+++++|.|..++++.+
T Consensus       463 ~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  463 TKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             cccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence              56788888889999999999999999999999999998865

>KOG0283|consensus

Probab=99.94  E-value=4.3e-26  Score=251.96  Aligned_cols=204  Identities=24%  Similarity=0.446  Sum_probs=173.8

Q ss_pred             EEEee-cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------------------
Q psy14440        453 TRTLV-GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL----------------------------------------  491 (711)
Q Consensus       453 ~~~l~-~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t----------------------------------------  491 (711)
                      ...+. .|.+.|+++.||+||+|||+||.||.|+||.+..                                        
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            34455 8999999999999999999999999999997643                                        


Q ss_pred             --------------------CeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEE
Q psy14440        492 --------------------WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQ  551 (711)
Q Consensus       492 --------------------~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~  551 (711)
                                          -+.++.|+||...|.++.|+.++ +|++++.|+|||+|.+....++..|. |..-|+||+
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa  416 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA  416 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence                                01234567999999999999765 99999999999999999999999995 999999999


Q ss_pred             EcC-CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC--C-
Q psy14440        552 FHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG--H-  627 (711)
Q Consensus       552 ~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~--h-  627 (711)
                      |+| |.+|+++||-||.||||++...+.+.... -..-|++++|+|||++.++|+.+|.+++|++...+....+.-  | 
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~  495 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN  495 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence            999 88999999999999999998877665555 447899999999999999999999999999988776655431  1 


Q ss_pred             -----CCCEEEEEEeCC-CCEEEEEeCCCcEEEEeCCC
Q psy14440        628 -----TDVVRALCFSRD-GNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       628 -----~~~V~sl~fspd-g~~Lasgs~Dg~V~iWdl~~  659 (711)
                           ...|+++.|.+. ...+++.+.|..|||+|.+.
T Consensus       496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~  533 (712)
T KOG0283|consen  496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD  533 (712)
T ss_pred             CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence                 237999999974 33566678899999999943

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=1e-24  Score=244.68  Aligned_cols=237  Identities=15%  Similarity=0.225  Sum_probs=187.4

Q ss_pred             EEEEEecCCCceEEEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        379 ACYTLLNARQQVTCAEISED-VSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~d-g~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      .+.++.+|.+.|.+++|+|+ +.+||+|+.||.|+||++.+......                       ........+.
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-----------------------~i~~p~~~L~  122 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-----------------------EIKDPQCILK  122 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----------------------ccccceEEee
Confidence            46678999999999999997 79999999999999999864321000                       0012345678


Q ss_pred             cccCCEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q psy14440        458 GHEGPVRKLSFSPDRSL-LLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP  536 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~-L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~  536 (711)
                      +|.+.|.+++|+|++.. |++++.|++|+|||+.+++.+..+. |...|.+++|+++|.+|++++.|++|++||+++++.
T Consensus       123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~  201 (568)
T PTZ00420        123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI  201 (568)
T ss_pred             cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE
Confidence            99999999999999876 5789999999999999998877776 667899999999999999999999999999999999


Q ss_pred             eEEeecCCCCeeEE-----EEcCCCCEEEEEEcCC----cEEEEECCC-CcEEEEeeC--CCCCeEEEEEecCCCEEEEE
Q psy14440        537 LRLFVGHYSDVDCV-----QFHPNSNYVATGSSDR----TIRLWDCVT-GSHVRLLTG--HKAPVYALSFSVCGRFLASA  604 (711)
Q Consensus       537 ~~~~~~h~~~V~~v-----~~sp~~~~latgs~Dg----~I~iwD~~~-~~~v~~~~~--h~~~I~~la~spdg~~Lasg  604 (711)
                      +..+.+|.+.+.+.     .|++++.+|++++.|+    +|+|||+++ ++.+..+..  +.+.+......++|.++++|
T Consensus       202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG  281 (568)
T PTZ00420        202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG  281 (568)
T ss_pred             EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence            99999998765433     3458889999988764    799999995 556655442  33334444445568999999


Q ss_pred             eCCCcEEEEECCCCeEEEEee--CCCCCEEEEEEeCCC
Q psy14440        605 GGDGNVHMWDLSNGHLLTLLT--GHTDVVRALCFSRDG  640 (711)
Q Consensus       605 s~Dg~I~iwDl~sg~~i~~l~--~h~~~V~sl~fspdg  640 (711)
                      +.|+.|++|++..+.. ..+.  .+..++.+++|.|..
T Consensus       282 kGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        282 KGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             ECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence            9999999999987753 2222  145778899999954

>KOG0267|consensus

Probab=99.94  E-value=1.7e-27  Score=257.18  Aligned_cols=233  Identities=25%  Similarity=0.484  Sum_probs=214.3

Q ss_pred             EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       455 ~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      .+..|...|.++..-..++.+++|+.|..+.+|.+....++..+.+|..+|.++.|+.....+++|+.+|+|++||++..
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA  102 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA  102 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence            45568888999988778899999999999999999888888889999999999999999999999999999999999999


Q ss_pred             ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q psy14440        535 HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD  614 (711)
Q Consensus       535 ~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwD  614 (711)
                      +.++++.||...+..+.|||-+.|+|.|+.|+.+++||++...|.+.+.+|...+.++.|+|+|+|+++|++|..++|||
T Consensus       103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d  182 (825)
T KOG0267|consen  103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWD  182 (825)
T ss_pred             hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeec
Confidence            99999999999999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCc
Q psy14440        615 LSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKAS  694 (711)
Q Consensus       615 l~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~  694 (711)
                      +..|+.+..|.+|.+.|.++.|+|..-++++||.|++|++||++++.-                       +....+...
T Consensus       183 ~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~-----------------------I~s~~~~~~  239 (825)
T KOG0267|consen  183 LTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV-----------------------ISSGKPETD  239 (825)
T ss_pred             ccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE-----------------------eeccCCccC
Confidence            999999999999999999999999999999999999999999986432                       222333467


Q ss_pred             ceEEEEEccCCeeee-C
Q psy14440        695 PLLHLIFSRRNILLR-G  710 (711)
Q Consensus       695 pV~~v~Fs~~n~lla-G  710 (711)
                      .|.+++|.+++..++ |
T Consensus       240 ~v~~~~fn~~~~~~~~G  256 (825)
T KOG0267|consen  240 GVRSLAFNPDGKIVLSG  256 (825)
T ss_pred             CceeeeecCCceeeecC
Confidence            888899999888877 6

>KOG0308|consensus

Probab=99.94  E-value=1.8e-26  Score=246.86  Aligned_cols=245  Identities=22%  Similarity=0.349  Sum_probs=215.8

Q ss_pred             EEEEC-CCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcC
Q psy14440        392 CAEIS-EDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSP  470 (711)
Q Consensus       392 ~l~fs-~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fsp  470 (711)
                      ++..+ +.+++|.+|+.||.|++|+.....-.                         .+......+..|+..|..+....
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~-------------------------~s~~~~asme~HsDWVNDiiL~~   83 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE-------------------------PSTPYIASMEHHSDWVNDIILCG   83 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCC-------------------------cccchhhhhhhhHhHHhhHHhhc
Confidence            34444 46678999999999999998532210                         11123556778999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCC--eEEEEEecCCCCEEEEEE-cCCCCEEEEEECCCeEEEEECCCCce--e--------
Q psy14440        471 DRSLLLSCSQDNTIRLWSLLLW--RCLVVYKGHGHPVWDIKF-SPHGYYFASAGHDRMARLWATDSYHP--L--------  537 (711)
Q Consensus       471 dg~~L~s~s~Dg~V~iwdl~t~--~~~~~~~~h~~~V~~v~~-sp~g~~l~sgs~Dg~i~lwd~~~~~~--~--------  537 (711)
                      +++.|+|||.|.+|++|+....  -|+.++..|...|.|+++ .++...+|+||-|+.|.+||++++..  +        
T Consensus        84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen   84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV  163 (735)
T ss_pred             CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence            9999999999999999999876  678888999999999999 77888999999999999999997622  1        


Q ss_pred             EEee-cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy14440        538 RLFV-GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS  616 (711)
Q Consensus       538 ~~~~-~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~  616 (711)
                      ..+. |+...|.+++.+++|..|+.|+..+.+++||.++++.+..+.||+..|.++..+.||+.+++|+.||+|++||+.
T Consensus       164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg  243 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG  243 (735)
T ss_pred             ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence            2222 788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        617 NGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       617 sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      ..+++.++..|...|+++..+++-..+++|+.||.|..=|+++..
T Consensus       244 qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  244 QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA  288 (735)
T ss_pred             ccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence            999999999999999999999999999999999999999998853

>KOG0305|consensus

Probab=99.94  E-value=2e-25  Score=241.21  Aligned_cols=263  Identities=22%  Similarity=0.356  Sum_probs=223.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEc
Q psy14440        390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFS  469 (711)
Q Consensus       390 V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fs  469 (711)
                      .+-++|+ ..+.||+|.. ..|.+|+..++++                               ......+...|+++.|+
T Consensus       180 ~nlldWs-s~n~laValg-~~vylW~~~s~~v-------------------------------~~l~~~~~~~vtSv~ws  226 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVALG-QSVYLWSASSGSV-------------------------------TELCSFGEELVTSVKWS  226 (484)
T ss_pred             hhHhhcc-cCCeEEEEec-ceEEEEecCCCce-------------------------------EEeEecCCCceEEEEEC
Confidence            3456788 5567777754 3588888754432                               22222237889999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEE-eecCCCCe
Q psy14440        470 PDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG-HGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL-FVGHYSDV  547 (711)
Q Consensus       470 pdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~-h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~-~~~h~~~V  547 (711)
                      ++|.+|++|..+|.|.|||..+.+.+..+.+ |...|-+++|.  +..+.+|+.|+.|..+|++..+.... +.+|...|
T Consensus       227 ~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeV  304 (484)
T KOG0305|consen  227 PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEV  304 (484)
T ss_pred             CCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhccccee
Confidence            9999999999999999999999999999998 99999999998  67899999999999999998765544 88999999


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEec-CCCEEEEEe--CCCcEEEEECCCCeEEEEe
Q psy14440        548 DCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSV-CGRFLASAG--GDGNVHMWDLSNGHLLTLL  624 (711)
Q Consensus       548 ~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~sp-dg~~Lasgs--~Dg~I~iwDl~sg~~i~~l  624 (711)
                      ..++|+++++++|+|+.|+.|.|||.........+..|.+.|.+++|+| ....||+|+  .|++|++||..+|+.+..+
T Consensus       305 CgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v  384 (484)
T KOG0305|consen  305 CGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV  384 (484)
T ss_pred             eeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc
Confidence            9999999999999999999999999988888999999999999999999 466888875  6899999999999999887


Q ss_pred             eCCCCCEEEEEEeCCCCEEEEE--eCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEc
Q psy14440        625 TGHTDVVRALCFSRDGNILASS--GQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFS  702 (711)
Q Consensus       625 ~~h~~~V~sl~fspdg~~Lasg--s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs  702 (711)
                      .. .+.|.+|.|++..+-|+++  -.++.|.||++.++                       ..+..+.+|...|..+++|
T Consensus       385 dt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-----------------------~~~~~l~gH~~RVl~la~S  440 (484)
T KOG0305|consen  385 DT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-----------------------KLVAELLGHTSRVLYLALS  440 (484)
T ss_pred             cc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-----------------------ceeeeecCCcceeEEEEEC
Confidence            64 4679999999998766664  35778999999762                       3455688899999999999


Q ss_pred             cCCeeee-CC
Q psy14440        703 RRNILLR-GP  711 (711)
Q Consensus       703 ~~n~lla-Ga  711 (711)
                      ||+..++ |+
T Consensus       441 Pdg~~i~t~a  450 (484)
T KOG0305|consen  441 PDGETIVTGA  450 (484)
T ss_pred             CCCCEEEEec
Confidence            9999998 64

>KOG0639|consensus

Probab=99.94  E-value=4.6e-26  Score=236.65  Aligned_cols=272  Identities=19%  Similarity=0.316  Sum_probs=235.5

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc----------------eeeeccCccccccccccCCcEEEEE
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK----------------LKAMKSSDQLQDIEMECDDILVRIM  445 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~----------------~~~~~~~~~~~~l~~~~~d~~i~i~  445 (711)
                      ..++|.+-|.++++|...+.+.||+. |.|+|||+....                ++..+...++..+.+++.-.++.||
T Consensus       414 ~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW  492 (705)
T KOG0639|consen  414 NTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW  492 (705)
T ss_pred             hhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence            45678999999999999999999985 679999996421                3445556778888899999999999


Q ss_pred             ecCCCeeEE--EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC
Q psy14440        446 DERNAETTR--TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD  523 (711)
Q Consensus       446 d~~~~~~~~--~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D  523 (711)
                      |+.......  .+....-.+++++.+||.+..++|..||.|+|||+.+...++.++||...+.||.++++|..|.||+-|
T Consensus       493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD  572 (705)
T KOG0639|consen  493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD  572 (705)
T ss_pred             eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence            987665533  333444578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEE
Q psy14440        524 RMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       524 g~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Las  603 (711)
                      .+||.||++++..+... ...+.|.++.++|++.+|++|-.++.|.|.... +.....+..|.+.|.++.|++.|+|+++
T Consensus       573 ntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvS  650 (705)
T KOG0639|consen  573 NTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVS  650 (705)
T ss_pred             cceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeee
Confidence            99999999988766543 245779999999999999999999999988864 4445667779999999999999999999


Q ss_pred             EeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        604 AGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       604 gs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      .+.|+.+..|...-|..+...+. .+.|.++.+|.|.++++||+.|....||.+
T Consensus       651 tGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  651 TGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            99999999999999988877763 567999999999999999999999988876

>KOG1407|consensus

Probab=99.94  E-value=2.9e-25  Score=215.01  Aligned_cols=264  Identities=19%  Similarity=0.316  Sum_probs=225.6

Q ss_pred             ceeeeccCccccccccccCCcEEEEEecCCCeeEE--EeecccCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEE
Q psy14440        420 KLKAMKSSDQLQDIEMECDDILVRIMDERNAETTR--TLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLV  496 (711)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~l~~h~~~V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t~~~~~  496 (711)
                      ++..+.+..++..++.++.++.+.+|+........  ..++|.+.|-.++|+| ....|++++.|.+|++||++.+++..
T Consensus        22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~  101 (313)
T KOG1407|consen   22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA  101 (313)
T ss_pred             cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE
Confidence            45556677778889999999999999987665443  4568999999999988 45689999999999999999999999


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC
Q psy14440        497 VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG  576 (711)
Q Consensus       497 ~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~  576 (711)
                      ......+.| -+.|+|+|.++++++.|..|...|.++.+.+.... ....+..++|+-++++++..+..|+|.|...-.-
T Consensus       102 ~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL  179 (313)
T KOG1407|consen  102 RIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL  179 (313)
T ss_pred             EeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEecccc
Confidence            887655555 48899999999999999999999999887666543 4456788999977777777777899999999999


Q ss_pred             cEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        577 SHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       577 ~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      +.+..++.|.....||.|+|+|+|+|+|+.|..+.+||+..--+++.+..+.-+|..|+||.||++||+||+|..|-|=+
T Consensus       180 kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~  259 (313)
T KOG1407|consen  180 KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAE  259 (313)
T ss_pred             ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEe
Confidence            99999999999999999999999999999999999999998888899999999999999999999999999999998877


Q ss_pred             CCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        657 FAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       657 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      +.++...                       .-. ...+|.+.|+|.|...|||
T Consensus       260 vetGd~~-----------------------~eI-~~~~~t~tVAWHPk~~LLA  288 (313)
T KOG1407|consen  260 VETGDRV-----------------------WEI-PCEGPTFTVAWHPKRPLLA  288 (313)
T ss_pred             cccCCeE-----------------------EEe-eccCCceeEEecCCCceee
Confidence            7654321                       111 1457889999999999998

>KOG0300|consensus

Probab=99.94  E-value=1.2e-25  Score=222.08  Aligned_cols=246  Identities=25%  Similarity=0.410  Sum_probs=217.6

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      ..+.+|.++|+.++......++.+++.|.+.+||.++                               ++.++..+.||.
T Consensus       142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E-------------------------------sg~CL~~Y~GH~  190 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLE-------------------------------SGACLATYTGHT  190 (481)
T ss_pred             hhhcccccceeeehhhcCCcceeecccccceeEEeec-------------------------------cccceeeecccc
Confidence            3578999999999998888899999999999999984                               566778899999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEEC------C------------------------------C----CeEEEEEec
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSL------L------------------------------L----WRCLVVYKG  500 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~V~iwdl------~------------------------------t----~~~~~~~~~  500 (711)
                      |.|.+++|++.+.+++++|.|++-.||..      .                              .    ...+..+.+
T Consensus       191 GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg  270 (481)
T KOG0300|consen  191 GSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG  270 (481)
T ss_pred             cceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec
Confidence            99999999999999999999999999962      0                              0    123567889


Q ss_pred             CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-cEE
Q psy14440        501 HGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG-SHV  579 (711)
Q Consensus       501 h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~-~~v  579 (711)
                      |...|.+..|-..|..+++++.|++..+||++++..+..+.||....+.++-||+.+++++++.|.+.++||.+.. ..+
T Consensus       271 H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV  350 (481)
T KOG0300|consen  271 HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSV  350 (481)
T ss_pred             cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhccee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999854 457


Q ss_pred             EEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        580 RLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGH-LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       580 ~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~-~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      ..|.||...|+++.|..+. .+++|++|.+|+|||+++.+ .+.+++. .+.++.++.+..+.+|+.--.+..||+||++
T Consensus       351 ~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  351 AVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             eeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecC
Confidence            8899999999999998765 57899999999999998854 5666663 5678999999888888888888899999997


Q ss_pred             C
Q psy14440        659 K  659 (711)
Q Consensus       659 ~  659 (711)
                      .
T Consensus       429 G  429 (481)
T KOG0300|consen  429 G  429 (481)
T ss_pred             C
Confidence            4

>KOG1332|consensus

Probab=99.94  E-value=9.7e-26  Score=216.33  Aligned_cols=246  Identities=27%  Similarity=0.414  Sum_probs=206.0

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCE
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV  463 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V  463 (711)
                      ..|.+.|..+...--|+.|||+++|++|||+...++.                            ....+.+|.||+|+|
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~----------------------------~s~ll~~L~Gh~GPV   59 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG----------------------------QSKLLAELTGHSGPV   59 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC----------------------------CceeeeEecCCCCCe
Confidence            4688889999999999999999999999999985321                            125678899999999


Q ss_pred             EEEEEcC--CCCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCEEEEEEcCC--CCEEEEEECCCeEEEEECCCC---
Q psy14440        464 RKLSFSP--DRSLLLSCSQDNTIRLWSLLLWR--CLVVYKGHGHPVWDIKFSPH--GYYFASAGHDRMARLWATDSY---  534 (711)
Q Consensus       464 ~~l~fsp--dg~~L~s~s~Dg~V~iwdl~t~~--~~~~~~~h~~~V~~v~~sp~--g~~l~sgs~Dg~i~lwd~~~~---  534 (711)
                      ..++|..  -|.+|++|+.||.|.||.-.+++  ....+..|...|++|+|.|+  |-.|++++.||.|.+.+.+..   
T Consensus        60 wqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w  139 (299)
T KOG1332|consen   60 WKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW  139 (299)
T ss_pred             eEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc
Confidence            9999976  79999999999999999987653  44566789999999999985  568999999999999988754   


Q ss_pred             ceeEEeecCCCCeeEEEEcCC---C-----------CEEEEEEcCCcEEEEECCCCc--EEEEeeCCCCCeEEEEEecCC
Q psy14440        535 HPLRLFVGHYSDVDCVQFHPN---S-----------NYVATGSSDRTIRLWDCVTGS--HVRLLTGHKAPVYALSFSVCG  598 (711)
Q Consensus       535 ~~~~~~~~h~~~V~~v~~sp~---~-----------~~latgs~Dg~I~iwD~~~~~--~v~~~~~h~~~I~~la~spdg  598 (711)
                      ...++...|.-.|++++|.|-   |           +.|++|+.|..|+||+..+++  .-+++.+|.+.|..++|.|.-
T Consensus       140 ~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~  219 (299)
T KOG1332|consen  140 TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSV  219 (299)
T ss_pred             cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcccc
Confidence            344566789999999999985   4           569999999999999988763  345688999999999999963


Q ss_pred             ----CEEEEEeCCCcEEEEECCCC--e-EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        599 ----RFLASAGGDGNVHMWDLSNG--H-LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       599 ----~~Lasgs~Dg~I~iwDl~sg--~-~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                          .+||+++.||+|.||..+..  . ....++.....+++++||..|++|+.++.|+.|.+|.=
T Consensus       220 gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  220 GLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             CCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence                58999999999999987532  1 12333445678999999999999999999999999974

>KOG0275|consensus

Probab=99.94  E-value=4.6e-26  Score=225.44  Aligned_cols=238  Identities=20%  Similarity=0.270  Sum_probs=212.4

Q ss_pred             eeccCccccccccccCCcEEEEEecCCCeeEEE--------eecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE
Q psy14440        423 AMKSSDQLQDIEMECDDILVRIMDERNAETTRT--------LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC  494 (711)
Q Consensus       423 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--------l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~  494 (711)
                      +..++++++.++.++-||.|.+|+..+++..+.        +.-|..+|.|++||.|...|++|+.||.|++|.+.+|.|
T Consensus       218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C  297 (508)
T KOG0275|consen  218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC  297 (508)
T ss_pred             heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchH
Confidence            345678889999999999999999888876543        446788999999999999999999999999999999999


Q ss_pred             EEEEe-cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC
Q psy14440        495 LVVYK-GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDC  573 (711)
Q Consensus       495 ~~~~~-~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~  573 (711)
                      ++.+. .|...|+|+.|+.|+..+++++.|.++|+..+.+|++++.|.||.+-|+...|.++|++++++++||+|++|+.
T Consensus       298 lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~  377 (508)
T KOG0275|consen  298 LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHG  377 (508)
T ss_pred             HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecC
Confidence            99996 89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeeC--CCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEeeCC---CCCEEEEEEeCCCCEEEEEe
Q psy14440        574 VTGSHVRLLTG--HKAPVYALSFSV-CGRFLASAGGDGNVHMWDLSNGHLLTLLTGH---TDVVRALCFSRDGNILASSG  647 (711)
Q Consensus       574 ~~~~~v~~~~~--h~~~I~~la~sp-dg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h---~~~V~sl~fspdg~~Lasgs  647 (711)
                      .+++|+.+|+.  ...+|+++-.-| +...++++...++|+|.++ .|+.++.+...   .+...+.+.||.|.++.+.+
T Consensus       378 KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig  456 (508)
T KOG0275|consen  378 KTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG  456 (508)
T ss_pred             cchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEc
Confidence            99999999873  456788877766 4567888888999999997 58888888532   35566778999999999999


Q ss_pred             CCCcEEEEeCCCCC
Q psy14440        648 QDCSVKLWDFAKLS  661 (711)
Q Consensus       648 ~Dg~V~iWdl~~~~  661 (711)
                      .|+.++.|.+.+..
T Consensus       457 ED~vlYCF~~~sG~  470 (508)
T KOG0275|consen  457 EDGVLYCFSVLSGK  470 (508)
T ss_pred             cCcEEEEEEeecCc
Confidence            99999999987543

>KOG0278|consensus

Probab=99.94  E-value=2.2e-26  Score=221.11  Aligned_cols=255  Identities=23%  Similarity=0.372  Sum_probs=225.5

Q ss_pred             cccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEE
Q psy14440        429 QLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDI  508 (711)
Q Consensus       429 ~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v  508 (711)
                      ++..+..++.|+.-.+-+-.++.-+.++.||.+.|++.+.+.+...-++++.|-+-++||.-++..+..+. |..-|..+
T Consensus        28 ~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~  106 (334)
T KOG0278|consen   28 DGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAV  106 (334)
T ss_pred             CceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeE
Confidence            34445566667776677778899999999999999999999998899999999999999999999999987 89999999


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCc-eeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCC
Q psy14440        509 KFSPHGYYFASAGHDRMARLWATDSYH-PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKA  587 (711)
Q Consensus       509 ~~sp~g~~l~sgs~Dg~i~lwd~~~~~-~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~  587 (711)
                      +|+.|.+++++|+.++.+|+||++..+ +...+.+|.+.|..+.|....+.|++++.|++||+||.++|+.++.+. -..
T Consensus       107 af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s  185 (334)
T KOG0278|consen  107 AFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNS  185 (334)
T ss_pred             EecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCC
Confidence            999999999999999999999998653 567788999999999999988999999999999999999999999887 567


Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcc
Q psy14440        588 PVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTE  667 (711)
Q Consensus       588 ~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~  667 (711)
                      .|+++.++++|++|.++. .+.|.+||..+-..++.++. ...|.+.+++|+..++++|+.|+.++.||+.+..+     
T Consensus       186 ~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE-----  258 (334)
T KOG0278|consen  186 PVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE-----  258 (334)
T ss_pred             CCcceeeccCCCEEEEec-CceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCce-----
Confidence            899999999999987764 46899999999998888874 34688999999999999999999999999986432     


Q ss_pred             ccccccccccccccccceeeec-ccCCcceEEEEEccCCeeee-C
Q psy14440        668 EVNLSHSADIKNSSLAYLVRSY-KTKASPLLHLIFSRRNILLR-G  710 (711)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~l~~~-~t~~~pV~~v~Fs~~n~lla-G  710 (711)
                                        +..| ++|-+||.+|+|||+|.+.| |
T Consensus       259 ------------------i~~~nkgh~gpVhcVrFSPdGE~yAsG  285 (334)
T KOG0278|consen  259 ------------------IGSYNKGHFGPVHCVRFSPDGELYASG  285 (334)
T ss_pred             ------------------eeecccCCCCceEEEEECCCCceeecc
Confidence                              2235 78899999999999999999 7

>KOG2096|consensus

Probab=99.94  E-value=8.8e-25  Score=216.52  Aligned_cols=274  Identities=20%  Similarity=0.271  Sum_probs=210.4

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce---------------eeeccCccccccccc-cCCcEEE
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKL---------------KAMKSSDQLQDIEME-CDDILVR  443 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~---------------~~~~~~~~~~~l~~~-~~d~~i~  443 (711)
                      .-++.+|.+.|+|++||.||+.||+++.|++|+||++..-..               ..+.+.++...+++. .....++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            446789999999999999999999999999999999865221               122333443333332 2344566


Q ss_pred             EEecCC---CeeEE---------EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEc
Q psy14440        444 IMDERN---AETTR---------TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFS  511 (711)
Q Consensus       444 i~d~~~---~~~~~---------~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~s  511 (711)
                      +|....   +....         .-..|.-.|..+-....+.+|++++.|.+|.+|++. |+.+..+......-+..+.|
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            664321   11111         112456677777777888999999999999999999 89998888777777889999


Q ss_pred             CCCCEEEEEECCCeEEEEECC---C-----CceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-------
Q psy14440        512 PHGYYFASAGHDRMARLWATD---S-----YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG-------  576 (711)
Q Consensus       512 p~g~~l~sgs~Dg~i~lwd~~---~-----~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~-------  576 (711)
                      |+|+++++++..--|++|..-   .     -..+..+.||.+.|..++|++++..+++.|.||+++|||+.-.       
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp  317 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP  317 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence            999999999999999999763   1     1234567899999999999999999999999999999997521       


Q ss_pred             cEEEEe----eCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee-CCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy14440        577 SHVRLL----TGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLT-GHTDVVRALCFSRDGNILASSGQDCS  651 (711)
Q Consensus       577 ~~v~~~----~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~-~h~~~V~sl~fspdg~~Lasgs~Dg~  651 (711)
                      +.++.+    ....+.-..++++|+|+.||.+.. ..+++|..++|+....+. .|...|.+|+|+++|++++++| |..
T Consensus       318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~  395 (420)
T KOG2096|consen  318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRY  395 (420)
T ss_pred             hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-cee
Confidence            222222    122334458999999999987754 579999999998877664 6899999999999999999998 778


Q ss_pred             EEEEe
Q psy14440        652 VKLWD  656 (711)
Q Consensus       652 V~iWd  656 (711)
                      +++..
T Consensus       396 vrv~~  400 (420)
T KOG2096|consen  396 VRVIR  400 (420)
T ss_pred             eeeec
Confidence            88865

>KOG1408|consensus

Probab=99.94  E-value=2.8e-25  Score=238.75  Aligned_cols=280  Identities=24%  Similarity=0.352  Sum_probs=236.2

Q ss_pred             EEEEecCCCceEEEEECCC-----------CCEEEEEeCCCeEEEEeCCCCc----------------------------
Q psy14440        380 CYTLLNARQQVTCAEISED-----------VSILAVGFSESYIKLWSLVPQK----------------------------  420 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~d-----------g~~LatG~~dg~I~vWdl~~~~----------------------------  420 (711)
                      ++.++-|...|+.+.--|-           ...+.|+++|++||+|++....                            
T Consensus       362 ~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~  441 (1080)
T KOG1408|consen  362 CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMH  441 (1080)
T ss_pred             eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhh
Confidence            4455667777777765441           1358899999999999996510                            


Q ss_pred             --------------------eeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcC---CCCEEEE
Q psy14440        421 --------------------LKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSP---DRSLLLS  477 (711)
Q Consensus       421 --------------------~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fsp---dg~~L~s  477 (711)
                                          ++.+..+++++.++.+...|.+++|++.+.+....+..|...|.|+.||.   ..++|++
T Consensus       442 d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS  521 (1080)
T KOG1408|consen  442 DASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS  521 (1080)
T ss_pred             hccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh
Confidence                                22344556778888999999999999999999999999999999999986   3568999


Q ss_pred             EeCCCeEEEEECC-CCeEEEEEecCCCCEEEEEEcCCC--CEEEEEECCCeEEEEECCCCceeEEeecC-----CCCeeE
Q psy14440        478 CSQDNTIRLWSLL-LWRCLVVYKGHGHPVWDIKFSPHG--YYFASAGHDRMARLWATDSYHPLRLFVGH-----YSDVDC  549 (711)
Q Consensus       478 ~s~Dg~V~iwdl~-t~~~~~~~~~h~~~V~~v~~sp~g--~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h-----~~~V~~  549 (711)
                      ++.|.-|.|||+. ....+.++.+|...|++|+|.-.|  ..+++++.|+.|.+-..+.....+.|..|     ...+..
T Consensus       522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYD  601 (1080)
T KOG1408|consen  522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYD  601 (1080)
T ss_pred             ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEE
Confidence            9999999999995 566778899999999999998877  78999999998865544332233333332     345889


Q ss_pred             EEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC---CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC
Q psy14440        550 VQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG---HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG  626 (711)
Q Consensus       550 v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~---h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~  626 (711)
                      ++..|+.+++++++.|+.|+|||+.+|+.++.|++   |.+....+...|.|-|||+.+.|.++.++|..+|+++..+.|
T Consensus       602 m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G  681 (1080)
T KOG1408|consen  602 MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG  681 (1080)
T ss_pred             eeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC
Confidence            99999999999999999999999999999999985   667788889999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        627 HTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       627 h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      |...|+.+.|.+|-+.|++.+.||+|.||.+..
T Consensus       682 HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  682 HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cchheeeeeecccchhheeecCCceEEEEECch
Confidence            999999999999999999999999999999864

>KOG0646|consensus

Probab=99.94  E-value=4e-25  Score=229.23  Aligned_cols=240  Identities=24%  Similarity=0.381  Sum_probs=206.9

Q ss_pred             CCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEE
Q psy14440        438 DDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYF  517 (711)
Q Consensus       438 ~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l  517 (711)
                      ....+.+|............--.++|.+++-+++|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.||.+|
T Consensus        59 ~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i  138 (476)
T KOG0646|consen   59 KRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI  138 (476)
T ss_pred             cCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence            34567888876555544444456889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCeEEEEECC---------CCceeEEeecCCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCcEEEEeeCCC
Q psy14440        518 ASAGHDRMARLWATD---------SYHPLRLFVGHYSDVDCVQFHPN--SNYVATGSSDRTIRLWDCVTGSHVRLLTGHK  586 (711)
Q Consensus       518 ~sgs~Dg~i~lwd~~---------~~~~~~~~~~h~~~V~~v~~sp~--~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~  586 (711)
                      +|||.||.|.+|++.         +.++++.|.+|.-.|+.+...+.  ..+|+|+|.|.+|++||+..|..+.++. -.
T Consensus       139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp  217 (476)
T KOG0646|consen  139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FP  217 (476)
T ss_pred             EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cC
Confidence            999999999999653         34788999999999999988764  4689999999999999999999888776 56


Q ss_pred             CCeEEEEEecCCCEEEEEeCCCcEEEEECCC----------------CeEEEEeeCCCC--CEEEEEEeCCCCEEEEEeC
Q psy14440        587 APVYALSFSVCGRFLASAGGDGNVHMWDLSN----------------GHLLTLLTGHTD--VVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       587 ~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s----------------g~~i~~l~~h~~--~V~sl~fspdg~~Lasgs~  648 (711)
                      ..+.+++.+|.++.++.|+.+|.|.+.++.+                +..+..+.||.+  .|++|+.+-||++|++|+.
T Consensus       218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~  297 (476)
T KOG0646|consen  218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE  297 (476)
T ss_pred             CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC
Confidence            7899999999999999999999999988743                234667789987  9999999999999999999


Q ss_pred             CCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEE
Q psy14440        649 DCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIF  701 (711)
Q Consensus       649 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~F  701 (711)
                      ||.|+|||+.+                       ..++++..+..+||..+++
T Consensus       298 dg~VcvWdi~S-----------------------~Q~iRtl~~~kgpVtnL~i  327 (476)
T KOG0646|consen  298 DGKVCVWDIYS-----------------------KQCIRTLQTSKGPVTNLQI  327 (476)
T ss_pred             CCCEEEEecch-----------------------HHHHHHHhhhccccceeEe
Confidence            99999999864                       4455666667778888877

>KOG0772|consensus

Probab=99.94  E-value=1.6e-25  Score=233.80  Aligned_cols=213  Identities=23%  Similarity=0.452  Sum_probs=175.2

Q ss_pred             eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE----EEEE-ecCCCCEEEEEEcCCCCEEEEEECCCeE
Q psy14440        452 TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC----LVVY-KGHGHPVWDIKFSPHGYYFASAGHDRMA  526 (711)
Q Consensus       452 ~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~----~~~~-~~h~~~V~~v~~sp~g~~l~sgs~Dg~i  526 (711)
                      ....+.+|+..|.++++.|.|..|++||.|.+|++||+.....    .+.+ ....+.|.++.|++.|..|++.+....+
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            3457789999999999999999999999999999999964322    1122 2346789999999999999999999999


Q ss_pred             EEEECCCCceeEE------------eecCCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcE-EEEee-----CCCC
Q psy14440        527 RLWATDSYHPLRL------------FVGHYSDVDCVQFHPN-SNYVATGSSDRTIRLWDCVTGSH-VRLLT-----GHKA  587 (711)
Q Consensus       527 ~lwd~~~~~~~~~------------~~~h~~~V~~v~~sp~-~~~latgs~Dg~I~iwD~~~~~~-v~~~~-----~h~~  587 (711)
                      +|+|-+....+..            -.||...++|.+|||. ...++|++.||++||||+...+. ..+|+     +..-
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            9999876544332            3479999999999994 56789999999999999986543 33333     3456


Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---EEEEeeCCCC--CEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        588 PVYALSFSVCGRFLASAGGDGNVHMWDLSNGH---LLTLLTGHTD--VVRALCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       588 ~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~---~i~~l~~h~~--~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      .+++++|++||++||+|+.||+|.+|+..+..   .+..-.+|..  .|++|+||.||++|++-|.|+++++||++++.+
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk  398 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK  398 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence            79999999999999999999999999986543   2344467876  899999999999999999999999999998776


Q ss_pred             cc
Q psy14440        663 EV  664 (711)
Q Consensus       663 ~~  664 (711)
                      .+
T Consensus       399 pL  400 (641)
T KOG0772|consen  399 PL  400 (641)
T ss_pred             ch
Confidence            54

>KOG2445|consensus

Probab=99.94  E-value=2e-24  Score=213.46  Aligned_cols=247  Identities=21%  Similarity=0.381  Sum_probs=200.8

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCE
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV  463 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V  463 (711)
                      .+|.+-|+|+.|..-|+.+|+|+.|++|+|||....                           ..+.......+.|.+.|
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~---------------------------s~~W~~Ts~Wrah~~Si   62 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD---------------------------SGTWSCTSSWRAHDGSI   62 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCC---------------------------CCceEEeeeEEecCCcE
Confidence            578899999999999999999999999999997431                           13445566788999999


Q ss_pred             EEEEEcC--CCCEEEEEeCCCeEEEEEC---------CCCeEEEEEecCCCCEEEEEEcC--CCCEEEEEECCCeEEEEE
Q psy14440        464 RKLSFSP--DRSLLLSCSQDNTIRLWSL---------LLWRCLVVYKGHGHPVWDIKFSP--HGYYFASAGHDRMARLWA  530 (711)
Q Consensus       464 ~~l~fsp--dg~~L~s~s~Dg~V~iwdl---------~t~~~~~~~~~h~~~V~~v~~sp--~g~~l~sgs~Dg~i~lwd  530 (711)
                      ..+.|.+  -|+.+++||.|+++.||.-         ..+....++....+.|++|+|.|  .|-.+++++.||++|||+
T Consensus        63 ~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYE  142 (361)
T KOG2445|consen   63 WRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYE  142 (361)
T ss_pred             EEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEe
Confidence            9999966  5899999999999999975         23555667777889999999999  577999999999999997


Q ss_pred             CCCC------ceeEEee-------cCCCCeeEEEEcCC---CCEEEEEEcC-----CcEEEEECCCC----cEEEEeeCC
Q psy14440        531 TDSY------HPLRLFV-------GHYSDVDCVQFHPN---SNYVATGSSD-----RTIRLWDCVTG----SHVRLLTGH  585 (711)
Q Consensus       531 ~~~~------~~~~~~~-------~h~~~V~~v~~sp~---~~~latgs~D-----g~I~iwD~~~~----~~v~~~~~h  585 (711)
                      .-..      .....+.       .+.....|+.|++.   ..+||+|+.+     +.+.||....+    ..+..+.+|
T Consensus       143 A~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~  222 (361)
T KOG2445|consen  143 APDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH  222 (361)
T ss_pred             cCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC
Confidence            6432      2222222       46677889999973   4578888865     47889876543    234566799


Q ss_pred             CCCeEEEEEecC----CCEEEEEeCCCcEEEEECCCC--------------------eEEEEeeCCCCCEEEEEEeCCCC
Q psy14440        586 KAPVYALSFSVC----GRFLASAGGDGNVHMWDLSNG--------------------HLLTLLTGHTDVVRALCFSRDGN  641 (711)
Q Consensus       586 ~~~I~~la~spd----g~~Lasgs~Dg~I~iwDl~sg--------------------~~i~~l~~h~~~V~sl~fspdg~  641 (711)
                      ..+|+.|+|.|+    -..||+++.|| |+||.++..                    +.+..+.+|.+.|+.+.|+-.|.
T Consensus       223 ~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt  301 (361)
T KOG2445|consen  223 TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT  301 (361)
T ss_pred             CCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee
Confidence            999999999996    35799999999 999998731                    34566789999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCC
Q psy14440        642 ILASSGQDCSVKLWDFA  658 (711)
Q Consensus       642 ~Lasgs~Dg~V~iWdl~  658 (711)
                      +|++.|.||+||+|..+
T Consensus       302 iLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  302 ILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEeecCCCceeeehhhh
Confidence            99999999999999754

>KOG0299|consensus

Probab=99.93  E-value=6.2e-25  Score=227.39  Aligned_cols=240  Identities=25%  Similarity=0.442  Sum_probs=205.7

Q ss_pred             cCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEE
Q psy14440        385 NARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVR  464 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~  464 (711)
                      +|...|.|++.|+||++||+|+.|..|.||+..                               +.+.++.+.+|.+.|.
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~-------------------------------t~ehv~~~~ghr~~V~  248 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCD-------------------------------TLEHVKVFKGHRGAVS  248 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCc-------------------------------ccchhhccccccccee
Confidence            899999999999999999999999999999874                               4556677899999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCC
Q psy14440        465 KLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHY  544 (711)
Q Consensus       465 ~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~  544 (711)
                      +++|-.....|++++.|.+|++|+++....+.++-+|...|.+|....-++.+.+|+.|+++++|++.. ....++.+|.
T Consensus       249 ~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~  327 (479)
T KOG0299|consen  249 SLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGE  327 (479)
T ss_pred             eeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCC
Confidence            999998888999999999999999999999999999999999999888888888888999999999943 3445678899


Q ss_pred             CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC-C-----------CCCeEEEEEecCCCEEEEEeCCCcEEE
Q psy14440        545 SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG-H-----------KAPVYALSFSVCGRFLASAGGDGNVHM  612 (711)
Q Consensus       545 ~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~-h-----------~~~I~~la~spdg~~Lasgs~Dg~I~i  612 (711)
                      +.+.|++|- |..++++||++|.|.+|++.+.+.+.+... |           ...|++++..+...++|+|+.+|.|++
T Consensus       328 ~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrL  406 (479)
T KOG0299|consen  328 GSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRL  406 (479)
T ss_pred             CCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEE
Confidence            999999997 667899999999999999999888876541 2           238999999999999999999999999


Q ss_pred             EECCCC----eEEEEeeCCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEeCC
Q psy14440        613 WDLSNG----HLLTLLTGHTDVVRALCFSRDGNILASS-GQDCSVKLWDFA  658 (711)
Q Consensus       613 wDl~sg----~~i~~l~~h~~~V~sl~fspdg~~Lasg-s~Dg~V~iWdl~  658 (711)
                      |-+..|    +++..+. -.+.|++|+|+.+|++|++| |....+-=|-..
T Consensus       407 W~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  407 WKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             EEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence            999887    3455555 56889999999999966555 444455445443

>KOG0288|consensus

Probab=99.93  E-value=1.1e-25  Score=229.79  Aligned_cols=265  Identities=21%  Similarity=0.294  Sum_probs=221.7

Q ss_pred             ceeeeccCccccccccccCCcEEEEEecCCCe--eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q psy14440        420 KLKAMKSSDQLQDIEMECDDILVRIMDERNAE--TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV  497 (711)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~  497 (711)
                      ++..+.+..+...++.++.|..|.+|+....+  .+.+|.|..+.|+++.|.++++++++++.|+.+++|++...+...+
T Consensus       177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~T  256 (459)
T KOG0288|consen  177 EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHT  256 (459)
T ss_pred             ccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhh
Confidence            33344444555678889999999999987666  6778889999999999999999999999999999999999999999


Q ss_pred             EecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc
Q psy14440        498 YKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS  577 (711)
Q Consensus       498 ~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~  577 (711)
                      +.||...|+++.|......+++|+.|.+|++||+....+.+++. ..+.+..|+.+  ...+++|..|++||+||+++..
T Consensus       257 LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~  333 (459)
T KOG0288|consen  257 LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD  333 (459)
T ss_pred             hcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCc
Confidence            99999999999999877679999999999999999988877654 23445556654  5678889999999999999999


Q ss_pred             EEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCC----CCEEEEEEeCCCCEEEEEeCCCcEE
Q psy14440        578 HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHT----DVVRALCFSRDGNILASSGQDCSVK  653 (711)
Q Consensus       578 ~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~----~~V~sl~fspdg~~Lasgs~Dg~V~  653 (711)
                      +++....+. .|+++..+.+|..|.+++.|.++.+.|+++......+.+..    ...+.+.|||++.|+++||.||.|+
T Consensus       334 ~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~  412 (459)
T KOG0288|consen  334 KTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVY  412 (459)
T ss_pred             eeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEE
Confidence            999988665 89999999999999999999999999999998888776432    3478899999999999999999999


Q ss_pred             EEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        654 LWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       654 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      ||++.+.+-+.                     +....+....|+++.|++-|..|.
T Consensus       413 iW~v~tgKlE~---------------------~l~~s~s~~aI~s~~W~~sG~~Ll  447 (459)
T KOG0288|consen  413 IWSVFTGKLEK---------------------VLSLSTSNAAITSLSWNPSGSGLL  447 (459)
T ss_pred             EEEccCceEEE---------------------EeccCCCCcceEEEEEcCCCchhh
Confidence            99997643221                     112223333699999999877654

>KOG1036|consensus

Probab=99.93  E-value=3.6e-24  Score=212.20  Aligned_cols=264  Identities=17%  Similarity=0.233  Sum_probs=213.8

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEE
Q psy14440        387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKL  466 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l  466 (711)
                      .+.|.++.|++.++.|++++.||++++|+.....                                .+....|.+++.++
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--------------------------------l~~~~~~~~plL~c   60 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--------------------------------LKLKFKHGAPLLDC   60 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--------------------------------hhhheecCCceeee
Confidence            4789999999999999999999999999986432                                12233589999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCC
Q psy14440        467 SFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSD  546 (711)
Q Consensus       467 ~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~  546 (711)
                      +|.+ ...+++|+.||.|+.+|+.++..... ..|..+|.||.+++....+++||+|++|++||.+.......+. ....
T Consensus        61 ~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i-gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kk  137 (323)
T KOG1036|consen   61 AFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI-GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKK  137 (323)
T ss_pred             eccC-CceEEEeccCceEEEEEecCCcceee-ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCce
Confidence            9986 55799999999999999998776544 4599999999999988899999999999999999755554443 3347


Q ss_pred             eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEe--eCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----eE
Q psy14440        547 VDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLL--TGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNG----HL  620 (711)
Q Consensus       547 V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~--~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg----~~  620 (711)
                      |.|+...  ++.|++|+.|..|.+||+++.......  ..-+..+.|+++-|++.=.++++-||+|.+=.+...    +.
T Consensus       138 Vy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~sk  215 (323)
T KOG1036|consen  138 VYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSK  215 (323)
T ss_pred             EEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhh
Confidence            8888774  789999999999999999987654322  234567899999998888899999999988776655    34


Q ss_pred             EEEeeCCCC---------CEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeeccc
Q psy14440        621 LTLLTGHTD---------VVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKT  691 (711)
Q Consensus       621 i~~l~~h~~---------~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t  691 (711)
                      -..|+.|..         +|++|+|+|-...|||||.||.|.+||+.+.+.                       +..|..
T Consensus       216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr-----------------------l~q~~~  272 (323)
T KOG1036|consen  216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR-----------------------LKQLAK  272 (323)
T ss_pred             ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh-----------------------hhhccC
Confidence            455666642         699999999989999999999999999875332                       223444


Q ss_pred             CCcceEEEEEccCCeeee-C
Q psy14440        692 KASPLLHLIFSRRNILLR-G  710 (711)
Q Consensus       692 ~~~pV~~v~Fs~~n~lla-G  710 (711)
                      -.+.|.+++|+.+|.+|| |
T Consensus       273 ~~~SI~slsfs~dG~~LAia  292 (323)
T KOG1036|consen  273 YETSISSLSFSMDGSLLAIA  292 (323)
T ss_pred             CCCceEEEEeccCCCeEEEE
Confidence            467899999999999999 6

>KOG0300|consensus

Probab=99.93  E-value=1.1e-24  Score=215.21  Aligned_cols=281  Identities=19%  Similarity=0.290  Sum_probs=221.1

Q ss_pred             ceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceee----eccCcc--ccc--cccccCCcEEEEEec
Q psy14440        377 SIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQ-KLKA----MKSSDQ--LQD--IEMECDDILVRIMDE  447 (711)
Q Consensus       377 s~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~-~~~~----~~~~~~--~~~--l~~~~~d~~i~i~d~  447 (711)
                      ..|+.+..+|.+.|+|+.|++.+.++++|+.|++-.||...-+ .+..    ...+.+  ...  -.....++..+.-..
T Consensus       180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~  259 (481)
T KOG0300|consen  180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH  259 (481)
T ss_pred             ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence            3578889999999999999999999999999999999984210 0000    000000  000  000000111100000


Q ss_pred             CCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEE
Q psy14440        448 RNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMAR  527 (711)
Q Consensus       448 ~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~  527 (711)
                      .-...+..|.+|.+.|.+..|...|+.++++|.|.+..+||+++++.+..+.||....+.++-+|..+++++++.|.+.+
T Consensus       260 tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFR  339 (481)
T KOG0300|consen  260 TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFR  339 (481)
T ss_pred             eeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeE
Confidence            01224567889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCC-CceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEeeCCCCCeEEEEEecCCCEEEEEe
Q psy14440        528 LWATDS-YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH-VRLLTGHKAPVYALSFSVCGRFLASAG  605 (711)
Q Consensus       528 lwd~~~-~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~-v~~~~~h~~~I~~la~spdg~~Lasgs  605 (711)
                      +||++. ...+..|.||...|+++.|.- +..+++|+.|.+|++||+++... +.++. -.++++.++++..+..||.-.
T Consensus       340 LWDFReaI~sV~VFQGHtdtVTS~vF~~-dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPh  417 (481)
T KOG0300|consen  340 LWDFREAIQSVAVFQGHTDTVTSVVFNT-DDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPH  417 (481)
T ss_pred             eccchhhcceeeeecccccceeEEEEec-CCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEecc
Confidence            999984 356788999999999999985 45789999999999999987653 45554 567899999999899999999


Q ss_pred             CCCcEEEEECCCCeEEEEe-----eCCCCCEEEEEEeCCC--CEEEEEeCCCcEEEEeCCCC
Q psy14440        606 GDGNVHMWDLSNGHLLTLL-----TGHTDVVRALCFSRDG--NILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       606 ~Dg~I~iwDl~sg~~i~~l-----~~h~~~V~sl~fspdg--~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      ++..|++||+.. ..+..+     .+|...|++++|..+-  .-|++||.|..+.-|++...
T Consensus       418 DNRqvRlfDlnG-~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  418 DNRQVRLFDLNG-NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             CCceEEEEecCC-CccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            999999999854 444433     5899999999998753  45889999999999998764

>KOG0267|consensus

Probab=99.93  E-value=4.5e-26  Score=246.29  Aligned_cols=241  Identities=27%  Similarity=0.492  Sum_probs=221.0

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      +....+..|...|.|+..-..++.+++|+.|..+-+|.+..                               ...+..|.
T Consensus        19 ~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k-------------------------------p~~i~S~~   67 (825)
T KOG0267|consen   19 WDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK-------------------------------PNAITSLT   67 (825)
T ss_pred             ccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccC-------------------------------Cchhheee
Confidence            34445667888889998877888999999998888888631                               11223488


Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      +|..+|.++.|+.+...|++|+.+|+|++||++..+.++++.||...+.++.|+|.+.|+++|+.|+.+++||++...+.
T Consensus        68 ~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~  147 (825)
T KOG0267|consen   68 GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS  147 (825)
T ss_pred             ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             EEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy14440        538 RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       538 ~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s  617 (711)
                      ..+.+|...|.++.|+|+|++++.|++|.+++|||...|+....|.+|.+.+.++.|+|..-++++|+.|++|++||+++
T Consensus       148 ~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet  227 (825)
T KOG0267|consen  148 HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET  227 (825)
T ss_pred             eeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC
Q psy14440        618 GHLLTLLTGHTDVVRALCFSRDGNILASSGQD  649 (711)
Q Consensus       618 g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D  649 (711)
                      .+.+.........|.+++|+++|..+++|..+
T Consensus       228 fe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  228 FEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             eEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            99999888888999999999999999988755

>KOG0640|consensus

Probab=99.93  E-value=8.5e-25  Score=215.77  Aligned_cols=210  Identities=26%  Similarity=0.465  Sum_probs=184.3

Q ss_pred             eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC------------------CeEEEEEecCCCCEEEEEEcCC
Q psy14440        452 TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL------------------WRCLVVYKGHGHPVWDIKFSPH  513 (711)
Q Consensus       452 ~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t------------------~~~~~~~~~h~~~V~~v~~sp~  513 (711)
                      ....+..|.+++.+.+|++||.++++||.|..|+|.|++.                  --.++++-.|...|+++.|+|.
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            3566778999999999999999999999999999999851                  1246677789999999999999


Q ss_pred             CCEEEEEECCCeEEEEECCCCceeEEee--cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEe---eCCCCC
Q psy14440        514 GYYFASAGHDRMARLWATDSYHPLRLFV--GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLL---TGHKAP  588 (711)
Q Consensus       514 g~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~---~~h~~~  588 (711)
                      ..++++|+.|++|++||+......+-++  .....|.++.|||.|.+|++|..-.++++||+.+.+|...-   .+|.+.
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a  263 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA  263 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence            9999999999999999997654333222  24567999999999999999999999999999999887654   369999


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee-CCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        589 VYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLT-GHT-DVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       589 I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~-~h~-~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      |+++.+|+.|++.++|+.||.|+|||--+++++.++. +|. ..|.+..|..+|+++++.|.|..|++|.+.+.-
T Consensus       264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R  338 (430)
T KOG0640|consen  264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR  338 (430)
T ss_pred             eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence            9999999999999999999999999999999998885 565 579999999999999999999999999998754

>KOG1539|consensus

Probab=99.92  E-value=8.1e-23  Score=224.40  Aligned_cols=309  Identities=24%  Similarity=0.378  Sum_probs=250.1

Q ss_pred             ceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------eeeeccCcccc-ccccccCCcEEEE
Q psy14440        377 SIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-----------LKAMKSSDQLQ-DIEMECDDILVRI  444 (711)
Q Consensus       377 s~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-----------~~~~~~~~~~~-~l~~~~~d~~i~i  444 (711)
                      .-.+|++.++...|+++.-+|--..+|.|..+|+|.|+++...+           +..+.+..++. .++.++..|.+.+
T Consensus       192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~  271 (910)
T KOG1539|consen  192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF  271 (910)
T ss_pred             CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence            45688999999999999999999999999999999999997654           33344444444 4566777799999


Q ss_pred             EecCCCeeEEEee-cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eEEEEEecCCCCEEEEEEc-CCCCEEE
Q psy14440        445 MDERNAETTRTLV-GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW----RCLVVYKGHGHPVWDIKFS-PHGYYFA  518 (711)
Q Consensus       445 ~d~~~~~~~~~l~-~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~----~~~~~~~~h~~~V~~v~~s-p~g~~l~  518 (711)
                      ||.+..+.+..+. .|.+.|....|.+....+++++.|..+++|=.+++    +.++.-.||..+-.|+.|. .+|+.+.
T Consensus       272 wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~il  351 (910)
T KOG1539|consen  272 WDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFIL  351 (910)
T ss_pred             EEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEE
Confidence            9999988887776 89999999999999999999999999998866543    3455667899999999997 5788889


Q ss_pred             EEECCCeEEEEECCCC-------c---------------------eeEEe------------------------------
Q psy14440        519 SAGHDRMARLWATDSY-------H---------------------PLRLF------------------------------  540 (711)
Q Consensus       519 sgs~Dg~i~lwd~~~~-------~---------------------~~~~~------------------------------  540 (711)
                      +++.|++.+.+++...       +                     ++..|                              
T Consensus       352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n  431 (910)
T KOG1539|consen  352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN  431 (910)
T ss_pred             ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence            9988888877754210       0                     00000                              


Q ss_pred             -------ecCC------CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEe---eCCCCCeEEEEEecCCCEEEEE
Q psy14440        541 -------VGHY------SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLL---TGHKAPVYALSFSVCGRFLASA  604 (711)
Q Consensus       541 -------~~h~------~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~---~~h~~~I~~la~spdg~~Lasg  604 (711)
                             -.+.      ..+++++.++-|++.+.|++.|+|-+|++++|-....|   ..|+++|+.++...-++.++++
T Consensus       432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa  511 (910)
T KOG1539|consen  432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSA  511 (910)
T ss_pred             cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEc
Confidence                   0122      45788999999999999999999999999999988888   4799999999999999999999


Q ss_pred             eCCCcEEEEECCCCe-----------------------------------------EEEEeeCCCCCEEEEEEeCCCCEE
Q psy14440        605 GGDGNVHMWDLSNGH-----------------------------------------LLTLLTGHTDVVRALCFSRDGNIL  643 (711)
Q Consensus       605 s~Dg~I~iwDl~sg~-----------------------------------------~i~~l~~h~~~V~sl~fspdg~~L  643 (711)
                      +.+|.+++||..++.                                         .++.+.||++.|++++||+||++|
T Consensus       512 ~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWl  591 (910)
T KOG1539|consen  512 GADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWL  591 (910)
T ss_pred             cCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEE
Confidence            999999999976543                                         122345899999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        644 ASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       644 asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      ++++.|++||+||+.+..                       ++-.+. -..+..+|.|||.|.+||
T Consensus       592 isasmD~tIr~wDlpt~~-----------------------lID~~~-vd~~~~sls~SPngD~LA  633 (910)
T KOG1539|consen  592 ISASMDSTIRTWDLPTGT-----------------------LIDGLL-VDSPCTSLSFSPNGDFLA  633 (910)
T ss_pred             EEeecCCcEEEEeccCcc-----------------------eeeeEe-cCCcceeeEECCCCCEEE
Confidence            999999999999997633                       222222 356888999999999988

>KOG0293|consensus

Probab=99.92  E-value=2.4e-24  Score=219.69  Aligned_cols=236  Identities=21%  Similarity=0.300  Sum_probs=200.1

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee------------eccCccccccccccCCcEEEEEec
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKA------------MKSSDQLQDIEMECDDILVRIMDE  447 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~------------~~~~~~~~~l~~~~~d~~i~i~d~  447 (711)
                      ..|+.+|..+|.-+.||||.++|++++.|-.+++||+.++....            ..+.+++..+++|+.|+.+..||.
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl  341 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL  341 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC
Confidence            56899999999999999999999999999999999998765432            334456777889999999999997


Q ss_pred             CCCeeEEEeeccc-CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeE
Q psy14440        448 RNAETTRTLVGHE-GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMA  526 (711)
Q Consensus       448 ~~~~~~~~l~~h~-~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i  526 (711)
                      +... .....+-. ..|.+++.++||+++++.+.|..|++++.++........ ...+|++++.|.+|+++++.-.+..+
T Consensus       342 Dgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei  419 (519)
T KOG0293|consen  342 DGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEI  419 (519)
T ss_pred             Ccch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCee
Confidence            5443 33333332 469999999999999999999999999998766665444 46789999999999999999999999


Q ss_pred             EEEECCCCceeEEeecCCCCe--eEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecC-CCEEE
Q psy14440        527 RLWATDSYHPLRLFVGHYSDV--DCVQFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVC-GRFLA  602 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~~h~~~V--~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spd-g~~La  602 (711)
                      ++||++..+.++.+.||...-  -.-||.. |..++++||.|+.|+||+..+|+.+.++.||...|+|++|+|. -.++|
T Consensus       420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~A  499 (519)
T KOG0293|consen  420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFA  499 (519)
T ss_pred             EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhh
Confidence            999999999999999987653  3334543 6689999999999999999999999999999999999999994 56899


Q ss_pred             EEeCCCcEEEEECCC
Q psy14440        603 SAGGDGNVHMWDLSN  617 (711)
Q Consensus       603 sgs~Dg~I~iwDl~s  617 (711)
                      +||+||+|+||-...
T Consensus       500 SasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  500 SASDDGTIRIWGPSD  514 (519)
T ss_pred             ccCCCCeEEEecCCc
Confidence            999999999997653

>KOG1446|consensus

Probab=99.92  E-value=1.2e-22  Score=202.52  Aligned_cols=216  Identities=25%  Similarity=0.478  Sum_probs=187.3

Q ss_pred             CcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEE
Q psy14440        439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFA  518 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~  518 (711)
                      |..|+..+..+.+.++.+.||...|.+++.+|-+..++|++.|++|++||++..+|...+.....+|  ++|.|.|-+||
T Consensus        79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA  156 (311)
T KOG1446|consen   79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFA  156 (311)
T ss_pred             CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEE
Confidence            5566666777888899999999999999999999999999999999999999988888877555554  88999999999


Q ss_pred             EEECCCeEEEEECCCC--ceeEEee---cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCe---E
Q psy14440        519 SAGHDRMARLWATDSY--HPLRLFV---GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPV---Y  590 (711)
Q Consensus       519 sgs~Dg~i~lwd~~~~--~~~~~~~---~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I---~  590 (711)
                      ++.....|++||++..  .+..+|.   +.....+.+.|++||++|+.++..+.+++.|.-+|.....+.++...-   .
T Consensus       157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~  236 (311)
T KOG1446|consen  157 LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL  236 (311)
T ss_pred             EecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence            9998889999999864  3555554   346778999999999999999999999999999999999998776543   5


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        591 ALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG-HTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       591 ~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~-h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      ..+|+|||+++++|+.||+|.+|++++|+.+..+++ +.+.+.++.|+|.-.+++++  +..+.+|=..
T Consensus       237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~  303 (311)
T KOG1446|consen  237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD  303 (311)
T ss_pred             eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence            778999999999999999999999999999999998 68899999999987777765  4578888654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=5.4e-22  Score=208.58  Aligned_cols=256  Identities=16%  Similarity=0.186  Sum_probs=191.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceee----------eccCcccccc-ccccCCcEEEEEecCCCeeEEEeecccCCEEEEEE
Q psy14440        400 SILAVGFSESYIKLWSLVPQKLKA----------MKSSDQLQDI-EMECDDILVRIMDERNAETTRTLVGHEGPVRKLSF  468 (711)
Q Consensus       400 ~~LatG~~dg~I~vWdl~~~~~~~----------~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~f  468 (711)
                      +++++++.|+.|++||+.+.+...          +..+.+...+ +.+..++.+++||..+++....+..+.. +..++|
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~   80 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFAL   80 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEE
Confidence            567788888888888886654322          2222333333 3445677888888887777766665544 567899


Q ss_pred             cCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCC-eEEEEECCCCceeEEeecCCCC
Q psy14440        469 SPDRSLLLSC-SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDR-MARLWATDSYHPLRLFVGHYSD  546 (711)
Q Consensus       469 spdg~~L~s~-s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg-~i~lwd~~~~~~~~~~~~h~~~  546 (711)
                      +++++.++++ +.|+.|++||+.+.+.+..+.. ...+.+++|+|+|.++++++.++ .+.+||.++++....+. ....
T Consensus        81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~  158 (300)
T TIGR03866        81 HPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQR  158 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCC
Confidence            9999977655 5689999999999888777763 34568899999999999988765 56778998877665443 2345


Q ss_pred             eeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEeeCCC-----C--CeEEEEEecCCCEEEEE-eCCCcEEEEECCC
Q psy14440        547 VDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSHVRLLTGHK-----A--PVYALSFSVCGRFLASA-GGDGNVHMWDLSN  617 (711)
Q Consensus       547 V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~v~~~~~h~-----~--~I~~la~spdg~~Lasg-s~Dg~I~iwDl~s  617 (711)
                      ..+++|++++.+|++++ .++.|++||+.+++.++.+..+.     .  ....++|+++|++++++ +.++.|.+||+.+
T Consensus       159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            67899999999886554 58999999999998877665321     1  23468899999986554 5567899999999


Q ss_pred             CeEEEEeeCCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEeCCC
Q psy14440        618 GHLLTLLTGHTDVVRALCFSRDGNILASS-GQDCSVKLWDFAK  659 (711)
Q Consensus       618 g~~i~~l~~h~~~V~sl~fspdg~~Lasg-s~Dg~V~iWdl~~  659 (711)
                      ++.+..+. +...+.+++|+++|++|+++ +.+|.|++||+..
T Consensus       239 ~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       239 YEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             CcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            88876654 34578999999999999886 4689999999876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1274|consensus

Probab=99.92  E-value=3.8e-23  Score=229.37  Aligned_cols=268  Identities=16%  Similarity=0.221  Sum_probs=222.9

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCC--ceee--------eccCccccccccccCCcEEEEEecCCCeeE
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQ--KLKA--------MKSSDQLQDIEMECDDILVRIMDERNAETT  453 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~--~~~~--------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  453 (711)
                      ..|.++.+.++|.++|.+|++++.||.|++|+....  +-..        .......+.+..++.++.|.+|...+++.-
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~   89 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED   89 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence            368889999999999999999999999999997543  1111        112233457788899999999998888877


Q ss_pred             EEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy14440        454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS  533 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~  533 (711)
                      ..+...+-++.+++|+-+|++++.||.|-.|++-++.+......+++|..+|.++.|+|.++++|+.+-||.|++|++.+
T Consensus        90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~  169 (933)
T KOG1274|consen   90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD  169 (933)
T ss_pred             ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence            77777788999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CceeEEeecC--------CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC--CCCCeEEEEEecCCCEEEE
Q psy14440        534 YHPLRLFVGH--------YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG--HKAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       534 ~~~~~~~~~h--------~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~--h~~~I~~la~spdg~~Las  603 (711)
                      +....++.+-        ...+..++|||+|..++..+.|++|++|+..++.....+..  +...+.+++|+|+|+|||+
T Consensus       170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA  249 (933)
T KOG1274|consen  170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA  249 (933)
T ss_pred             chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence            8776655431        34467789999998999999999999999999988777653  4455999999999999999


Q ss_pred             EeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy14440        604 AGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLW  655 (711)
Q Consensus       604 gs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iW  655 (711)
                      ++.||.|.|||..+-..    +.....|.+++|.++++.+-.-..-|+..+|
T Consensus       250 s~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  250 STLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             eccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence            99999999999987221    2234679999999988766555445544444

>KOG4283|consensus

Probab=99.92  E-value=1.4e-23  Score=206.09  Aligned_cols=219  Identities=25%  Similarity=0.376  Sum_probs=175.9

Q ss_pred             ecCCCceEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCC
Q psy14440        384 LNARQQVTCAEISE-DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGP  462 (711)
Q Consensus       384 ~~h~~~V~~l~fs~-dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~  462 (711)
                      .-|.+.|+++.+.+ .|+++++|+.||.|.|||++...-..     ....++           +....-....-.+|.-.
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e-----~s~li~-----------k~~c~v~~~h~~~Hky~  103 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYE-----ASGLIA-----------KHKCIVAKQHENGHKYA  103 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchh-----hcccee-----------heeeeccccCCccceee
Confidence            45779999999997 78999999999999999996432100     000000           00000001122468889


Q ss_pred             EEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCC---CCEEEEEECCCeEEEEECCCCceeE
Q psy14440        463 VRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH---GYYFASAGHDRMARLWATDSYHPLR  538 (711)
Q Consensus       463 V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~---g~~l~sgs~Dg~i~lwd~~~~~~~~  538 (711)
                      |.++.|-| |...+.++|.|.+++|||..+.+....|+ ..+.|++-+|+|-   ...+|+|..|-.|++.|+.+|....
T Consensus       104 iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH  182 (397)
T KOG4283|consen  104 ISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH  182 (397)
T ss_pred             eeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence            99999998 66688999999999999999999988887 4678899999983   3478888899999999999999999


Q ss_pred             EeecCCCCeeEEEEcCCCCE-EEEEEcCCcEEEEECCCC-cEEEEee--------------CCCCCeEEEEEecCCCEEE
Q psy14440        539 LFVGHYSDVDCVQFHPNSNY-VATGSSDRTIRLWDCVTG-SHVRLLT--------------GHKAPVYALSFSVCGRFLA  602 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp~~~~-latgs~Dg~I~iwD~~~~-~~v~~~~--------------~h~~~I~~la~spdg~~La  602 (711)
                      ++.||...|.+|.|+|...+ |++|+.||.|++||++.. .|.+.+.              .|.+.|+.+||+.+|.+++
T Consensus       183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~  262 (397)
T KOG4283|consen  183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA  262 (397)
T ss_pred             eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhh
Confidence            99999999999999997665 788999999999999865 4555443              4667899999999999999


Q ss_pred             EEeCCCcEEEEECCCCe
Q psy14440        603 SAGGDGNVHMWDLSNGH  619 (711)
Q Consensus       603 sgs~Dg~I~iwDl~sg~  619 (711)
                      +++.|.++++|+..+|+
T Consensus       263 ~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  263 SCGTDDRIRVWNMESGR  279 (397)
T ss_pred             hccCccceEEeecccCc
Confidence            99999999999988764

>KOG1539|consensus

Probab=99.92  E-value=6.1e-23  Score=225.34  Aligned_cols=196  Identities=24%  Similarity=0.320  Sum_probs=180.4

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE---ecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY---KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~---~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      ..+++++.++.|++.+.|+..|+|-+|++++|-....|   ..|..+|.+++....++.+++++.+|.+++||......+
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            67899999999999999999999999999999999998   589999999999999999999999999999999987766


Q ss_pred             EEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy14440        538 RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       538 ~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s  617 (711)
                      ..+. -...+.++..|-....++++.+|-.|+++|+.+.+.+|.|.||.+.|++++|||||+||++++.|++|++||+.+
T Consensus       529 ~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  529 KSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT  607 (910)
T ss_pred             eeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence            6554 356788999999889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC-CcEEEEeCC
Q psy14440        618 GHLLTLLTGHTDVVRALCFSRDGNILASSGQD-CSVKLWDFA  658 (711)
Q Consensus       618 g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D-g~V~iWdl~  658 (711)
                      +.++..+. -...+.+++|||+|.+||+...| ..|++|-=.
T Consensus       608 ~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  608 GTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             cceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            99998776 35678999999999999999998 679999643

>KOG0646|consensus

Probab=99.91  E-value=1.3e-23  Score=218.08  Aligned_cols=242  Identities=21%  Similarity=0.291  Sum_probs=204.5

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEE
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLS  467 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~  467 (711)
                      +.|.|++-+++|.+|+.|+..|.|.+|.+.++                               ..+..+.+|-..|+|+.
T Consensus        82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG-------------------------------~LL~v~~aHYQ~ITcL~  130 (476)
T KOG0646|consen   82 GPVHALASSNLGYFLLAGTISGNLYLWELSSG-------------------------------ILLNVLSAHYQSITCLK  130 (476)
T ss_pred             cceeeeecCCCceEEEeecccCcEEEEEeccc-------------------------------cHHHHHHhhccceeEEE
Confidence            67999999999999999999999999998644                               44555678999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECC---------CCeEEEEEecCCCCEEEEEEcCCC--CEEEEEECCCeEEEEECCCCce
Q psy14440        468 FSPDRSLLLSCSQDNTIRLWSLL---------LWRCLVVYKGHGHPVWDIKFSPHG--YYFASAGHDRMARLWATDSYHP  536 (711)
Q Consensus       468 fspdg~~L~s~s~Dg~V~iwdl~---------t~~~~~~~~~h~~~V~~v~~sp~g--~~l~sgs~Dg~i~lwd~~~~~~  536 (711)
                      |+.||.+|+|||.||.|.+|++.         +-..++.+..|.-+|+++.....|  .+++|+|.|+++++||+..+..
T Consensus       131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L  210 (476)
T KOG0646|consen  131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL  210 (476)
T ss_pred             EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence            99999999999999999999872         345678899999999999987743  5999999999999999999988


Q ss_pred             eEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC----------------CcEEEEeeCCCC--CeEEEEEecCC
Q psy14440        537 LRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT----------------GSHVRLLTGHKA--PVYALSFSVCG  598 (711)
Q Consensus       537 ~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~----------------~~~v~~~~~h~~--~I~~la~spdg  598 (711)
                      +..+. ....+.+++.+|-++.+++|+.+|.|.+.++..                +..++.+.||.+  .|+|++++-||
T Consensus       211 Llti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg  289 (476)
T KOG0646|consen  211 LLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG  289 (476)
T ss_pred             eEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc
Confidence            87775 567899999999999999999999999887643                235667889988  99999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEE-EeCCCcEEEEeCCCCC
Q psy14440        599 RFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILAS-SGQDCSVKLWDFAKLS  661 (711)
Q Consensus       599 ~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Las-gs~Dg~V~iWdl~~~~  661 (711)
                      ..|++|+.||.|.|||+.+.++++++....++|+.+.+.+-..-.+. -+..-.+-.|++...-
T Consensus       290 tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr~i  353 (476)
T KOG0646|consen  290 TLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKRMI  353 (476)
T ss_pred             cEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhhccC
Confidence            99999999999999999999999988867789999999664332222 3334456677766543

>KOG1332|consensus

Probab=99.91  E-value=5.4e-24  Score=204.38  Aligned_cols=233  Identities=22%  Similarity=0.383  Sum_probs=193.7

Q ss_pred             ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEEecCCCCEEEEEEcC--CCCEEEEEECCCeEEEEEC
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW---RCLVVYKGHGHPVWDIKFSP--HGYYFASAGHDRMARLWAT  531 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~---~~~~~~~~h~~~V~~v~~sp--~g~~l~sgs~Dg~i~lwd~  531 (711)
                      ..|...|..+...--|+.|++|+.|++|+|+.++..   ..+..+.||.++||.++|..  .|.+||+++.||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            468888888888888999999999999999999753   56789999999999999976  8999999999999999998


Q ss_pred             CCCc--eeEEeecCCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCC---cEEEEeeCCCCCeEEEEEecC---C---
Q psy14440        532 DSYH--PLRLFVGHYSDVDCVQFHPN--SNYVATGSSDRTIRLWDCVTG---SHVRLLTGHKAPVYALSFSVC---G---  598 (711)
Q Consensus       532 ~~~~--~~~~~~~h~~~V~~v~~sp~--~~~latgs~Dg~I~iwD~~~~---~~v~~~~~h~~~I~~la~spd---g---  598 (711)
                      .+++  ....+..|...|++|+|.|.  |-.||++++||.|.|.+.++.   ...+....|.-.|++++|.|-   |   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            8763  34556789999999999885  668999999999999988754   234556789999999999986   5   


Q ss_pred             --------CEEEEEeCCCcEEEEECCCCe--EEEEeeCCCCCEEEEEEeCCC----CEEEEEeCCCcEEEEeCCCCCCcc
Q psy14440        599 --------RFLASAGGDGNVHMWDLSNGH--LLTLLTGHTDVVRALCFSRDG----NILASSGQDCSVKLWDFAKLSDEV  664 (711)
Q Consensus       599 --------~~Lasgs~Dg~I~iwDl~sg~--~i~~l~~h~~~V~sl~fspdg----~~Lasgs~Dg~V~iWdl~~~~~~~  664 (711)
                              +.|++|+.|..|+||+..+++  .-..+.+|.+.|+.++|.|.-    ..||+||.||+|.||-.....+..
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w  247 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW  247 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence                    579999999999999998864  345589999999999999953    489999999999999876322211


Q ss_pred             CccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        665 GTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                                       ...++..   -..+++++.||..|.+||
T Consensus       248 -----------------k~tll~~---f~~~~w~vSWS~sGn~La  272 (299)
T KOG1332|consen  248 -----------------KKTLLEE---FPDVVWRVSWSLSGNILA  272 (299)
T ss_pred             -----------------ccccccc---CCcceEEEEEeccccEEE
Confidence                             1222222   457899999999999998

>KOG0264|consensus

Probab=99.91  E-value=2e-23  Score=216.50  Aligned_cols=246  Identities=21%  Similarity=0.392  Sum_probs=201.0

Q ss_pred             EEEeecccCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe----------EEEEEecCCCCEEEEEEcCCC-CEEEEE
Q psy14440        453 TRTLVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSLLLWR----------CLVVYKGHGHPVWDIKFSPHG-YYFASA  520 (711)
Q Consensus       453 ~~~l~~h~~~V~~l~fspdg~-~L~s~s~Dg~V~iwdl~t~~----------~~~~~~~h~~~V~~v~~sp~g-~~l~sg  520 (711)
                      +.....|.+.|..+...|... .+++.+..+.|.|||..+..          .-..+.+|...-++++|++.. -++++|
T Consensus       117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG  196 (422)
T ss_pred             EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence            344557999999999999765 56667788999999985322          223778998888889999843 489999


Q ss_pred             ECCCeEEEEECCCC-------ceeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECC--CCcEEEEeeCCCCCeE
Q psy14440        521 GHDRMARLWATDSY-------HPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCV--TGSHVRLLTGHKAPVY  590 (711)
Q Consensus       521 s~Dg~i~lwd~~~~-------~~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~--~~~~v~~~~~h~~~I~  590 (711)
                      +.|++|++||+...       .+...+.+|...|..++||+ +...+++++.|+.+.|||++  +.+..+...+|.+.|+
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn  276 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN  276 (422)
T ss_pred             cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence            99999999999743       24567889999999999999 55678889999999999999  5566777889999999


Q ss_pred             EEEEec-CCCEEEEEeCCCcEEEEECCCC-eEEEEeeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCCCccCcc
Q psy14440        591 ALSFSV-CGRFLASAGGDGNVHMWDLSNG-HLLTLLTGHTDVVRALCFSRD-GNILASSGQDCSVKLWDFAKLSDEVGTE  667 (711)
Q Consensus       591 ~la~sp-dg~~Lasgs~Dg~I~iwDl~sg-~~i~~l~~h~~~V~sl~fspd-g~~Lasgs~Dg~V~iWdl~~~~~~~~~~  667 (711)
                      |++|+| ++..||+|+.|++|.+||+++- +.+..+.+|...|..+.|||+ .++||++|.|+.+.|||+.+..+....+
T Consensus       277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e  356 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE  356 (422)
T ss_pred             EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence            999999 5667889999999999999985 468899999999999999995 5699999999999999999866554322


Q ss_pred             ccccccccccccccccceeeecccCCcceEEEEEccCCee
Q psy14440        668 EVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNIL  707 (711)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~l  707 (711)
                      .         ...+-..++....+|...|....|.+..-.
T Consensus       357 d---------a~dgppEllF~HgGH~~kV~DfsWnp~ePW  387 (422)
T KOG0264|consen  357 D---------AEDGPPELLFIHGGHTAKVSDFSWNPNEPW  387 (422)
T ss_pred             h---------hccCCcceeEEecCcccccccccCCCCCCe
Confidence            1         122345677788889999999999986543

>KOG2048|consensus

Probab=99.91  E-value=5.4e-22  Score=214.05  Aligned_cols=245  Identities=21%  Similarity=0.352  Sum_probs=208.5

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc-cCCEE
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH-EGPVR  464 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h-~~~V~  464 (711)
                      .-..|+|+|||.+++.||+|-.+|.|.||++...                              .-....+.|+ .+.|.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~------------------------------w~~~~vi~g~~drsIE   73 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN------------------------------WFLEPVIHGPEDRSIE   73 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCC------------------------------ceeeEEEecCCCCcee
Confidence            3478999999999999999999999999998542                              1122334443 56899


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee--EEeec
Q psy14440        465 KLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL--RLFVG  542 (711)
Q Consensus       465 ~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~--~~~~~  542 (711)
                      +++|+ ++..|+|.+.+|.|.-||+.+++....+....+.||+++.+|.+..++.|++||.+..++...++..  +.+..
T Consensus        74 ~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r  152 (691)
T KOG2048|consen   74 SLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR  152 (691)
T ss_pred             eEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc
Confidence            99999 5667999999999999999999999999999999999999999999999999998888877766543  44555


Q ss_pred             CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee--------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q psy14440        543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT--------GHKAPVYALSFSVCGRFLASAGGDGNVHMWD  614 (711)
Q Consensus       543 h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~--------~h~~~I~~la~spdg~~Lasgs~Dg~I~iwD  614 (711)
                      ..+.|.+++|++++..|++||.||.|++||+.++..+....        +...-|+++.|-.++ .|++|+..|+|.+||
T Consensus       153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd  231 (691)
T KOG2048|consen  153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWD  231 (691)
T ss_pred             ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEc
Confidence            67899999999999999999999999999999998877322        123346777776555 689999999999999


Q ss_pred             CCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        615 LSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       615 l~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      ...|.++..+..|.+.|.+|+.+.++++++++|.|+.|..|.......
T Consensus       232 ~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  232 SIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             ccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence            999999999999999999999999999999999999999988776543

>KOG1408|consensus

Probab=99.91  E-value=6.1e-23  Score=220.91  Aligned_cols=297  Identities=18%  Similarity=0.270  Sum_probs=238.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCc----eeeeccCc----------------c-----ccccccccCCcEEEE
Q psy14440        390 VTCAEISEDVSILAVGFSESYIKLWSLVPQK----LKAMKSSD----------------Q-----LQDIEMECDDILVRI  444 (711)
Q Consensus       390 V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~----~~~~~~~~----------------~-----~~~l~~~~~d~~i~i  444 (711)
                      ..++.|++....|.+...|..+.|||+..-+    ...+..+.                .     ...+...+.|++|++
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl  406 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL  406 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence            3467899989999999999999999996522    11111110                0     122456678999999


Q ss_pred             EecCCCeeEEE-------------------------------------eecccCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy14440        445 MDERNAETTRT-------------------------------------LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLW  487 (711)
Q Consensus       445 ~d~~~~~~~~~-------------------------------------l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iw  487 (711)
                      |+......-..                                     ..+....|.+++.||+|++|++|..-|+++||
T Consensus       407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy  486 (1080)
T KOG1408|consen  407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY  486 (1080)
T ss_pred             eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence            99765221111                                     11223468999999999999999999999999


Q ss_pred             ECCCCeEEEEEecCCCCEEEEEEcC---CCCEEEEEECCCeEEEEECCCC-ceeEEeecCCCCeeEEEEcCCC--CEEEE
Q psy14440        488 SLLLWRCLVVYKGHGHPVWDIKFSP---HGYYFASAGHDRMARLWATDSY-HPLRLFVGHYSDVDCVQFHPNS--NYVAT  561 (711)
Q Consensus       488 dl~t~~~~~~~~~h~~~V~~v~~sp---~g~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~h~~~V~~v~~sp~~--~~lat  561 (711)
                      ++...+.+..+..|...|.|+.|+.   ..+.+|+++.|+.|.+||+... ..+.++.+|.+.|++|.|.-+|  ..+++
T Consensus       487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis  566 (1080)
T KOG1408|consen  487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS  566 (1080)
T ss_pred             EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence            9999999999999999999999986   3468999999999999999754 5677899999999999998877  67889


Q ss_pred             EEcCCcEEEEECCCCcEEEEeeCC-----CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC---CCCCEEE
Q psy14440        562 GSSDRTIRLWDCVTGSHVRLLTGH-----KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG---HTDVVRA  633 (711)
Q Consensus       562 gs~Dg~I~iwD~~~~~~v~~~~~h-----~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~---h~~~V~s  633 (711)
                      ++.|+.|.+--.+.....+.|..|     +..++.++..|..+++++++.|..|+|||+.+|+..+.|++   |.+..-.
T Consensus       567 cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK  646 (1080)
T KOG1408|consen  567 CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK  646 (1080)
T ss_pred             ccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE
Confidence            999988754433322223344322     45789999999999999999999999999999999999975   5677888


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        634 LCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       634 l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      +...|.|.|||+.+.|.++.++|+.+                       +.+++...+|..-|..|.|++|..-|.
T Consensus       647 v~lDPSgiY~atScsdktl~~~Df~s-----------------------gEcvA~m~GHsE~VTG~kF~nDCkHlI  699 (1080)
T KOG1408|consen  647 VILDPSGIYLATSCSDKTLCFVDFVS-----------------------GECVAQMTGHSEAVTGVKFLNDCKHLI  699 (1080)
T ss_pred             EEECCCccEEEEeecCCceEEEEecc-----------------------chhhhhhcCcchheeeeeecccchhhe
Confidence            99999999999999999999999864                       677888999999999999999877554

>KOG0269|consensus

Probab=99.91  E-value=1.1e-23  Score=229.56  Aligned_cols=234  Identities=25%  Similarity=0.411  Sum_probs=196.6

Q ss_pred             ccccccccCCcEEEEEecCC---CeeEEEeecccCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCE
Q psy14440        430 LQDIEMECDDILVRIMDERN---AETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV  505 (711)
Q Consensus       430 ~~~l~~~~~d~~i~i~d~~~---~~~~~~l~~h~~~V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V  505 (711)
                      .+.|++.+..|.|.+||...   .+.+..|..|+..|++++|++ ...+|++||.||+|++||++..+...++.+....|
T Consensus       100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESi  179 (839)
T KOG0269|consen  100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESI  179 (839)
T ss_pred             hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhh
Confidence            34567777788888888765   555667889999999999988 45689999999999999999999999999999999


Q ss_pred             EEEEEcC-CCCEEEEEECCCeEEEEECCCC-ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee
Q psy14440        506 WDIKFSP-HGYYFASAGHDRMARLWATDSY-HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT  583 (711)
Q Consensus       506 ~~v~~sp-~g~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~  583 (711)
                      .+|+|+| .+.+|+++...|.+.+||++.. ++...+..|.+.|.|+.||||+.+||||+.|++|+|||+.+++......
T Consensus       180 RDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t  259 (839)
T KOG0269|consen  180 RDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT  259 (839)
T ss_pred             hceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE
Confidence            9999999 6789999999999999999865 5677888999999999999999999999999999999998765544433


Q ss_pred             C-CCCCeEEEEEecCCCE-EEEEe--CCCcEEEEECCCCe-EEEEeeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEeC
Q psy14440        584 G-HKAPVYALSFSVCGRF-LASAG--GDGNVHMWDLSNGH-LLTLLTGHTDVVRALCFSR-DGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       584 ~-h~~~I~~la~spdg~~-Lasgs--~Dg~I~iwDl~sg~-~i~~l~~h~~~V~sl~fsp-dg~~Lasgs~Dg~V~iWdl  657 (711)
                      - ...+|.+++|-|...+ ||+++  .|-.|+|||++..- ...++..|+..++.++|.. |-..|.+++.||+|..-.+
T Consensus       260 InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~  339 (839)
T KOG0269|consen  260 INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF  339 (839)
T ss_pred             EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence            2 3578999999997654 56554  57799999997643 4678889999999999965 4568999999999988777


Q ss_pred             CCCCCc
Q psy14440        658 AKLSDE  663 (711)
Q Consensus       658 ~~~~~~  663 (711)
                      ++....
T Consensus       340 knat~p  345 (839)
T KOG0269|consen  340 KNATTP  345 (839)
T ss_pred             hcccCh
Confidence            765543

>KOG0301|consensus

Probab=99.91  E-value=4.9e-23  Score=222.29  Aligned_cols=220  Identities=25%  Similarity=0.465  Sum_probs=195.1

Q ss_pred             ccccccCCcEEEEEecCCCeeE--EEeecccCCEEE-EEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEE
Q psy14440        432 DIEMECDDILVRIMDERNAETT--RTLVGHEGPVRK-LSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWD  507 (711)
Q Consensus       432 ~l~~~~~d~~i~i~d~~~~~~~--~~l~~h~~~V~~-l~fsp-dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~  507 (711)
                      .+..++.|+++++|+....+..  ..+.+|.+-|.+ +++-+ ++-.|++|+.|++|.+|...+...+..+++|...|.+
T Consensus        27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~  106 (745)
T KOG0301|consen   27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCS  106 (745)
T ss_pred             EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceee
Confidence            4556778999999997655543  567788888877 88875 5556999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCC
Q psy14440        508 IKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKA  587 (711)
Q Consensus       508 v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~  587 (711)
                      +....++. +++||.|.++++|-..  ++...+.+|...|.++++-|.+ .++|||.|++|++|.  .++++++|.||..
T Consensus       107 ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk--~~~~l~tf~gHtD  180 (745)
T KOG0301|consen  107 LSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWK--GGTLLKTFSGHTD  180 (745)
T ss_pred             eecCCcCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeecc--CCchhhhhccchh
Confidence            99888886 9999999999999764  4566689999999999999877 889999999999996  4889999999999


Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        588 PVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       588 ~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      .|..+++-+++. +++++.||.|++|++ +|+++.++.+|++.|++++...++..++|+|+|++++||+...
T Consensus       181 ~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e  250 (745)
T KOG0301|consen  181 CVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE  250 (745)
T ss_pred             heeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc
Confidence            999999987765 578999999999998 8999999999999999999888899999999999999999763

>KOG1273|consensus

Probab=99.91  E-value=7.1e-23  Score=202.88  Aligned_cols=239  Identities=21%  Similarity=0.364  Sum_probs=195.2

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEc
Q psy14440        390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFS  469 (711)
Q Consensus       390 V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fs  469 (711)
                      -.|+.||+.|.+||+|+.||.|.|||+.+..                               ..+.+.+|..+|++++||
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-------------------------------iar~lsaH~~pi~sl~WS   74 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-------------------------------IARMLSAHVRPITSLCWS   74 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc-------------------------------hhhhhhccccceeEEEec
Confidence            7899999999999999999999999986432                               345677899999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEE----------------------------------------
Q psy14440        470 PDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIK----------------------------------------  509 (711)
Q Consensus       470 pdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~----------------------------------------  509 (711)
                      +||+.|+++|.|..|.+||+..+.++..++ ..++||.+.                                        
T Consensus        75 ~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln  153 (405)
T KOG1273|consen   75 RDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLN  153 (405)
T ss_pred             CCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccc
Confidence            999999999999999999998887776654 233444333                                        


Q ss_pred             -------EcCCCCEEEEEECCCeEEEEECCCCceeEEeecCC-CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-----
Q psy14440        510 -------FSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHY-SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG-----  576 (711)
Q Consensus       510 -------~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~-----  576 (711)
                             |.+.|+|+++|...|.+.+++..+.+++..+.-.. ..|..+.++-.|+.|++.+.|+.||.|+++.-     
T Consensus       154 ~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r  233 (405)
T KOG1273|consen  154 SSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGR  233 (405)
T ss_pred             cccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCc
Confidence                   44457899999999999999999998888777555 78999999999999999999999999998621     


Q ss_pred             --cE--EEEee--CCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeEEEEeeCCC-CCEEEEEEeCCCCEEEEEeC
Q psy14440        577 --SH--VRLLT--GHKAPVYALSFSVCGRFLASAGG-DGNVHMWDLSNGHLLTLLTGHT-DVVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       577 --~~--v~~~~--~h~~~I~~la~spdg~~Lasgs~-Dg~I~iwDl~sg~~i~~l~~h~-~~V~sl~fspdg~~Lasgs~  648 (711)
                        ..  .+.+.  -.+..-.+++||.+|.|+++|+. ...++||.-..|.+++.+.|.. .....+.|+|-...+++- .
T Consensus       234 ~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~  312 (405)
T KOG1273|consen  234 DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-A  312 (405)
T ss_pred             cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-c
Confidence              11  01111  12345568899999999988874 4579999999999999999887 567789999988888877 6


Q ss_pred             CCcEEEEeCCCCC
Q psy14440        649 DCSVKLWDFAKLS  661 (711)
Q Consensus       649 Dg~V~iWdl~~~~  661 (711)
                      .|.|+||......
T Consensus       313 sg~v~iw~~~~~e  325 (405)
T KOG1273|consen  313 SGVVYIWAVVQVE  325 (405)
T ss_pred             CCceEEEEeeccc
Confidence            8999999976543

>KOG2106|consensus

Probab=99.91  E-value=1.5e-21  Score=203.79  Aligned_cols=299  Identities=19%  Similarity=0.285  Sum_probs=232.0

Q ss_pred             EecCCCceEEEEECC--CCCEEEEEe--CCCeEEEEeCCCCc-----------eeeeccCccccccccccCCcEEEEEec
Q psy14440        383 LLNARQQVTCAEISE--DVSILAVGF--SESYIKLWSLVPQK-----------LKAMKSSDQLQDIEMECDDILVRIMDE  447 (711)
Q Consensus       383 l~~h~~~V~~l~fs~--dg~~LatG~--~dg~I~vWdl~~~~-----------~~~~~~~~~~~~l~~~~~d~~i~i~d~  447 (711)
                      +.....+|+|++||+  .|.+|+.-.  .+..+.|||+..+.           +....+++....+.+.+..+.+.+|+.
T Consensus       150 ~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~  229 (626)
T KOG2106|consen  150 IGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTL  229 (626)
T ss_pred             eccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEc
Confidence            445667899999996  456666543  35678999985432           122345566667778888999999998


Q ss_pred             CCCeeEEEe---ecc-cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC
Q psy14440        448 RNAETTRTL---VGH-EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD  523 (711)
Q Consensus       448 ~~~~~~~~l---~~h-~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D  523 (711)
                      ..+...++.   ..+ ...|.|++|.++|. +++|..+|+|.||+..+.+..+....|.+.|.+++.-.+|. +++|+.|
T Consensus       230 ~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKD  307 (626)
T KOG2106|consen  230 RGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKD  307 (626)
T ss_pred             cCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCcc
Confidence            887765543   232 36799999999986 78999999999999998888887779999999999999995 5559999


Q ss_pred             CeEEEEECCCCc-----------eeE-----------------------------EeecCCCCeeEEEEcCCCCEEEEEE
Q psy14440        524 RMARLWATDSYH-----------PLR-----------------------------LFVGHYSDVDCVQFHPNSNYVATGS  563 (711)
Q Consensus       524 g~i~lwd~~~~~-----------~~~-----------------------------~~~~h~~~V~~v~~sp~~~~latgs  563 (711)
                      +.|..||-+-.+           .+|                             ...+|......++.||+.+.++|++
T Consensus       308 Rki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g  387 (626)
T KOG2106|consen  308 RKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG  387 (626)
T ss_pred             ceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeecc
Confidence            999999832100           111                             1225777888999999999999999


Q ss_pred             cCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEE
Q psy14440        564 SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNIL  643 (711)
Q Consensus       564 ~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~L  643 (711)
                      .|+.+++|+  ..+.+.... -..++.|+.|+|.| .+|.|...|...+.|..+...+..-.. +..++.++|+|+|.+|
T Consensus       388 qdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~l  462 (626)
T KOG2106|consen  388 QDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFL  462 (626)
T ss_pred             CcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEE
Confidence            999999999  334333322 45778999999999 999999999999999999777766665 8899999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        644 ASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       644 asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      |.|+.|+.|+||.+......                   ...+.....  +||.+|.||.|+++|.
T Consensus       463 Avgs~d~~iyiy~Vs~~g~~-------------------y~r~~k~~g--s~ithLDwS~Ds~~~~  507 (626)
T KOG2106|consen  463 AVGSHDNHIYIYRVSANGRK-------------------YSRVGKCSG--SPITHLDWSSDSQFLV  507 (626)
T ss_pred             EEecCCCeEEEEEECCCCcE-------------------EEEeeeecC--ceeEEeeecCCCceEE
Confidence            99999999999998752221                   111122222  8999999999999886

>KOG2055|consensus

Probab=99.91  E-value=1.1e-22  Score=210.71  Aligned_cols=272  Identities=16%  Similarity=0.226  Sum_probs=226.1

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-------------eeeeccCcccc-ccccccCCcEEEEEecCCCe
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-------------LKAMKSSDQLQ-DIEMECDDILVRIMDERNAE  451 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-------------~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~  451 (711)
                      ..+.|+|+.|+|...+|.+|+.|+.++||.+++..             +....+.+++. .+.+++.....+.||..+.+
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            45789999999999999999999999999998753             11223344454 56677777888999988776


Q ss_pred             eE--EEeeccc-CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEE
Q psy14440        452 TT--RTLVGHE-GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARL  528 (711)
Q Consensus       452 ~~--~~l~~h~-~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~l  528 (711)
                      ..  ..+.|+. ..+.....|+++++|+..+..|.|.+....+++.+..++ -.+.|.+++|+.+++.|++++.+|.|.+
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            54  3445554 346677889999999999999999999999999999988 4778999999999999999999999999


Q ss_pred             EECCCCceeEEeecCCC-CeeEEEEcCCCCEEEEEEcCCcEEEEECCC------CcEEEEeeCCCCCeEEEEEecCCCEE
Q psy14440        529 WATDSYHPLRLFVGHYS-DVDCVQFHPNSNYVATGSSDRTIRLWDCVT------GSHVRLLTGHKAPVYALSFSVCGRFL  601 (711)
Q Consensus       529 wd~~~~~~~~~~~~h~~-~V~~v~~sp~~~~latgs~Dg~I~iwD~~~------~~~v~~~~~h~~~I~~la~spdg~~L  601 (711)
                      ||++...+++.+....+ .-+++|.+.++.|||+||..|.|.|||.++      .+.+..+..-...|++++|++|++.|
T Consensus       371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL  450 (514)
T KOG2055|consen  371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL  450 (514)
T ss_pred             EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence            99999999998875322 235677778999999999999999999654      24566666677899999999999999


Q ss_pred             EEEe--CCCcEEEEECCCCeEEEEeeCCC---CCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        602 ASAG--GDGNVHMWDLSNGHLLTLLTGHT---DVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       602 asgs--~Dg~I~iwDl~sg~~i~~l~~h~---~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      |.++  .+..+++-.+.+......+....   +.|+|++|||.|.+||.|..+|.|.+|.+.
T Consensus       451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            9877  46789999998888777775433   579999999999999999999999999875

>KOG0308|consensus

Probab=99.90  E-value=1.7e-23  Score=224.12  Aligned_cols=252  Identities=23%  Similarity=0.323  Sum_probs=217.4

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      +..++..|.+-|+.++...+|+.|++++.|.+|++|+.....                             .-...++..
T Consensus        65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-----------------------------~~c~stir~  115 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-----------------------------TFCMSTIRT  115 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-----------------------------chhHhhhhc
Confidence            455678899999999999999999999999999999975321                             123556778


Q ss_pred             ccCCEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCeE--EE--------EEe-cCCCCEEEEEEcCCCCEEEEEECCCeE
Q psy14440        459 HEGPVRKLSF-SPDRSLLLSCSQDNTIRLWSLLLWRC--LV--------VYK-GHGHPVWDIKFSPHGYYFASAGHDRMA  526 (711)
Q Consensus       459 h~~~V~~l~f-spdg~~L~s~s~Dg~V~iwdl~t~~~--~~--------~~~-~h~~~V~~v~~sp~g~~l~sgs~Dg~i  526 (711)
                      |+..|.|+++ ..+...++|||-|+.|.+||+.++..  +.        .+. |+...|++++.++.|..|++|+..+.+
T Consensus       116 H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~l  195 (735)
T KOG0308|consen  116 HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDL  195 (735)
T ss_pred             ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccce
Confidence            9999999999 77888999999999999999987732  22        222 788899999999999999999999999


Q ss_pred             EEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeC
Q psy14440        527 RLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~  606 (711)
                      ++||.++++.+..+.||...|.++..+.+|+.++++|+||+|++||+...+|+.++..|+..|+++..+++-..+++|+.
T Consensus       196 r~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~r  275 (735)
T KOG0308|consen  196 RLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGR  275 (735)
T ss_pred             EEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        607 DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       607 Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ||.|..=|+++......+-....+|..+..+.+.+-+-+++.|+.|+-|-..-
T Consensus       276 d~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~  328 (735)
T KOG0308|consen  276 DGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP  328 (735)
T ss_pred             CCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence            99999999998543333333456677777776555557788899999998764

>KOG4283|consensus

Probab=99.90  E-value=1.9e-22  Score=198.19  Aligned_cols=208  Identities=26%  Similarity=0.474  Sum_probs=174.4

Q ss_pred             eecccCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe------------EEE---EEecCCCCEEEEEEcC-CCCEEE
Q psy14440        456 LVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWR------------CLV---VYKGHGHPVWDIKFSP-HGYYFA  518 (711)
Q Consensus       456 l~~h~~~V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t~~------------~~~---~~~~h~~~V~~v~~sp-~g~~l~  518 (711)
                      .+.|.|.|.++...+ .|+++++|+.||.|.+||++.-.            |+.   .-.+|...|.++.|-| |...|.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            346889999999987 78999999999999999996432            111   1136888999999999 556999


Q ss_pred             EEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCC---CCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEe
Q psy14440        519 SAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN---SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFS  595 (711)
Q Consensus       519 sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~---~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~s  595 (711)
                      +++.|.++++||+++.+....|. ..+.|..-+++|-   ..++|+|..|-.|++.|+.+|.+-+++.||...|.++.|+
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws  197 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS  197 (397)
T ss_pred             cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence            99999999999999988777775 4567888888883   4578889999999999999999999999999999999999


Q ss_pred             cCCCE-EEEEeCCCcEEEEECCCC-eEEEEe--------------eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        596 VCGRF-LASAGGDGNVHMWDLSNG-HLLTLL--------------TGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       596 pdg~~-Lasgs~Dg~I~iwDl~sg-~~i~~l--------------~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      |...+ |++|+.||.|++||++.. -++..+              ..|.+.|++++|+.+|.++++++.|..+++|+..+
T Consensus       198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES  277 (397)
T ss_pred             cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence            98775 678999999999999764 233332              35778899999999999999999999999999988


Q ss_pred             CCCcc
Q psy14440        660 LSDEV  664 (711)
Q Consensus       660 ~~~~~  664 (711)
                      .....
T Consensus       278 G~ntl  282 (397)
T KOG4283|consen  278 GRNTL  282 (397)
T ss_pred             Ccccc
Confidence            66543

>KOG0268|consensus

Probab=99.90  E-value=3.5e-23  Score=208.52  Aligned_cols=244  Identities=16%  Similarity=0.273  Sum_probs=204.4

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      .|+.+|..|.+-|..++++.  ..+++++.|.+|+.|.++..                                ..+++.
T Consensus       100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~--------------------------------p~~til  145 (433)
T KOG0268|consen  100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP--------------------------------PLHTIL  145 (433)
T ss_pred             hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC--------------------------------cceeee
Confidence            46778999999999999998  67788889999999998542                                223333


Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCce
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSYHP  536 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g-~~l~sgs~Dg~i~lwd~~~~~~  536 (711)
                      + .+.++++.-+..+..++|||.+  |.|||......+..+.-....|.++.|+|.. ..|++|+.|+.|.+||+++..+
T Consensus       146 g-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P  222 (433)
T KOG0268|consen  146 G-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP  222 (433)
T ss_pred             c-cccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc
Confidence            2 3456777777777889999875  9999999888999988888899999999955 4777888999999999999999


Q ss_pred             eEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-cEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q psy14440        537 LRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG-SHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       537 ~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~-~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl  615 (711)
                      ++.+. -...-+.|+|+|++-.+++|+.|..++.||++.- ..+..+.+|.+.|.+++|||.|+-+++||.|.+|+||..
T Consensus       223 l~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~  301 (433)
T KOG0268|consen  223 LKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPV  301 (433)
T ss_pred             cceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeec
Confidence            88765 3455678999998888999999999999999864 457788899999999999999999999999999999999


Q ss_pred             CCCeEEEEeeCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        616 SNGHLLTLLTGH-TDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       616 ~sg~~i~~l~~h-~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      +.+..-..+..- -..|.++.||.|.++++|||.|+.||+|....
T Consensus       302 ~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  302 NHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             CCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence            887654443221 25699999999999999999999999998764

>KOG2445|consensus

Probab=99.89  E-value=1.7e-21  Score=192.82  Aligned_cols=249  Identities=19%  Similarity=0.394  Sum_probs=195.6

Q ss_pred             ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEEC----CCCeEEEEEecCCCCEEEEEEcC--CCCEEEEEECCCeEEEEE
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL----LLWRCLVVYKGHGHPVWDIKFSP--HGYYFASAGHDRMARLWA  530 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl----~t~~~~~~~~~h~~~V~~v~~sp--~g~~l~sgs~Dg~i~lwd  530 (711)
                      .+|..-|+++.|...|+.+++|+.|++|+|||.    .++.+....+.|.+.|+.|.|.+  .|..+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            368889999999999999999999999999996    35788889999999999999966  789999999999999996


Q ss_pred             CC---------CCceeEEeecCCCCeeEEEEcC--CCCEEEEEEcCCcEEEEECCCC------cEEEEee-------CCC
Q psy14440        531 TD---------SYHPLRLFVGHYSDVDCVQFHP--NSNYVATGSSDRTIRLWDCVTG------SHVRLLT-------GHK  586 (711)
Q Consensus       531 ~~---------~~~~~~~~~~h~~~V~~v~~sp--~~~~latgs~Dg~I~iwD~~~~------~~v~~~~-------~h~  586 (711)
                      -.         ......++....+.|+.|+|.|  -|-.+|+++.||++|||+.-.-      .....+.       .+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            52         1234456777889999999999  4788999999999999986432      2222332       366


Q ss_pred             CCeEEEEEecC---CCEEEEEeCC-----CcEEEEECCCC----eEEEEeeCCCCCEEEEEEeCC----CCEEEEEeCCC
Q psy14440        587 APVYALSFSVC---GRFLASAGGD-----GNVHMWDLSNG----HLLTLLTGHTDVVRALCFSRD----GNILASSGQDC  650 (711)
Q Consensus       587 ~~I~~la~spd---g~~Lasgs~D-----g~I~iwDl~sg----~~i~~l~~h~~~V~sl~fspd----g~~Lasgs~Dg  650 (711)
                      ....|+.|++.   ..+||+|+.+     +.++||....+    ..+.++.+|+..|++|+|.|+    -.+||+++.||
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence            77889999874   4578888766     58899976443    346677899999999999995    24899999999


Q ss_pred             cEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        651 SVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       651 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                       |+||++...-.....++.......   ..-.-..|+.|..|+..|..|.|.-.|.+|+
T Consensus       250 -v~I~~v~~~~s~i~~ee~~~~~~~---~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs  304 (361)
T KOG2445|consen  250 -VRIFKVKVARSAIEEEEVLAPDLM---TDLPVEKVSELDDHNGEVWRVRWNMTGTILS  304 (361)
T ss_pred             -EEEEEEeeccchhhhhcccCCCCc---cccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence             999999875554433333221111   0112334677999999999999999999988

>KOG0269|consensus

Probab=99.89  E-value=3.8e-23  Score=225.44  Aligned_cols=250  Identities=20%  Similarity=0.351  Sum_probs=195.4

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEE
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLS  467 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~  467 (711)
                      ...+++..+++-..|+.++. ..++|+.+.......                 .+.+.+  ..+..     -.-.+..+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~-----------------~~~~~~--k~kqn-----~~~S~~DVk   94 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSE-----------------KCNHRF--KTKQN-----KFYSAADVK   94 (839)
T ss_pred             cccceEeecCCcceeEEecc-cceeeEeeCcccCCc-----------------ceeeec--ccccc-----eeeehhhcc
Confidence            45667777788877777764 457777765422110                 011111  00000     011245667


Q ss_pred             EcC-CCCEEEEEeCCCeEEEEECCC---CeEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCceeEEeec
Q psy14440        468 FSP-DRSLLLSCSQDNTIRLWSLLL---WRCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMARLWATDSYHPLRLFVG  542 (711)
Q Consensus       468 fsp-dg~~L~s~s~Dg~V~iwdl~t---~~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~  542 (711)
                      |.. +.++|++|+..|.|.+||+..   .+.+..|..|...|.++.|++ ..+++++||.||+|++||++..+...++.+
T Consensus        95 W~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~  174 (839)
T KOG0269|consen   95 WGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS  174 (839)
T ss_pred             cccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc
Confidence            764 567999999999999999976   556678899999999999998 457999999999999999999999999999


Q ss_pred             CCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCC-cEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q psy14440        543 HYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTG-SHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL  620 (711)
Q Consensus       543 h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~-~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~  620 (711)
                      ....|..|.|+| .+++++++.+.|.+++||++.. ++.+.+..|.++|.|+.|+|++.+|||||.|+.|+|||+.+++.
T Consensus       175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~  254 (839)
T KOG0269|consen  175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA  254 (839)
T ss_pred             cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence            999999999999 6889999999999999999864 56788899999999999999999999999999999999987654


Q ss_pred             EEEeeCC-CCCEEEEEEeCCCC-EEEEEeC--CCcEEEEeCCCCCC
Q psy14440        621 LTLLTGH-TDVVRALCFSRDGN-ILASSGQ--DCSVKLWDFAKLSD  662 (711)
Q Consensus       621 i~~l~~h-~~~V~sl~fspdg~-~Lasgs~--Dg~V~iWdl~~~~~  662 (711)
                      .....-+ ..+|..+.|-|+.. .||+++.  |-.|+|||++...-
T Consensus       255 ~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI  300 (839)
T KOG0269|consen  255 KPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI  300 (839)
T ss_pred             cceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc
Confidence            4333333 36899999999755 5777664  77899999997543

>KOG0639|consensus

Probab=99.89  E-value=1.6e-22  Score=210.46  Aligned_cols=252  Identities=19%  Similarity=0.302  Sum_probs=206.6

Q ss_pred             cccccCCcEEEEEecCCC---eeEEEee--cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE--EEecCCCCE
Q psy14440        433 IEMECDDILVRIMDERNA---ETTRTLV--GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV--VYKGHGHPV  505 (711)
Q Consensus       433 l~~~~~d~~i~i~d~~~~---~~~~~l~--~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~--~~~~h~~~V  505 (711)
                      -+..+..+.|+|||....   ..+..|.  .-.+.|.++.+++||+.|++|+.-.+|.|||+..-....  .+....-..
T Consensus       433 hVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaC  512 (705)
T KOG0639|consen  433 HVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC  512 (705)
T ss_pred             eeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhh
Confidence            345566888999997533   2233333  235678999999999999999999999999997544333  333334567


Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC
Q psy14440        506 WDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH  585 (711)
Q Consensus       506 ~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h  585 (711)
                      ..++.+||.+..+++..||.|.|||+.+...++.|.||...+.||.++++|..|.||+-|.+||-||+++++.+.... .
T Consensus       513 yALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F  591 (705)
T KOG0639|consen  513 YALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-F  591 (705)
T ss_pred             hhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-h
Confidence            788999999999999999999999999999999999999999999999999999999999999999999998765533 4


Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccC
Q psy14440        586 KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVG  665 (711)
Q Consensus       586 ~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~  665 (711)
                      .+.|.++.++|++.||++|-.++.|.|.... +.....+.-|.+.|.++.|++.|+++++.|.|+-+..|...-.....+
T Consensus       592 ~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq  670 (705)
T KOG0639|consen  592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ  670 (705)
T ss_pred             hhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceee
Confidence            5789999999999999999999999998864 444556677999999999999999999999999999999875444322


Q ss_pred             ccccccccccccccccccceeeecccCCcceEEEEEccCCeeee-C
Q psy14440        666 TEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR-G  710 (711)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-G  710 (711)
                      ..                        ..++|.+...|.||.|++ |
T Consensus       671 sk------------------------E~SsVlsCDIS~ddkyIVTG  692 (705)
T KOG0639|consen  671 SK------------------------ESSSVLSCDISFDDKYIVTG  692 (705)
T ss_pred             cc------------------------ccCcceeeeeccCceEEEec
Confidence            11                        245788888888888887 6

>KOG2096|consensus

Probab=99.89  E-value=1.8e-21  Score=193.19  Aligned_cols=232  Identities=23%  Similarity=0.334  Sum_probs=180.6

Q ss_pred             EEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------------------------eEEEE
Q psy14440        454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW------------------------------------RCLVV  497 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~------------------------------------~~~~~  497 (711)
                      ..|.+|.+.|++++|+.||++|++++.|++|++|+++..                                    ..+..
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            357899999999999999999999999999999997432                                    11222


Q ss_pred             Ee-----------------------cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcC
Q psy14440        498 YK-----------------------GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP  554 (711)
Q Consensus       498 ~~-----------------------~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp  554 (711)
                      |+                       .|...|-++-...++.+|++++.|.+|.+|++. |+.+..+......-+..+.+|
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP  238 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP  238 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence            21                       123344455555677899999999999999999 888888887777788899999


Q ss_pred             CCCEEEEEEcCCcEEEEECCC---C-----cEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-------Ce
Q psy14440        555 NSNYVATGSSDRTIRLWDCVT---G-----SHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN-------GH  619 (711)
Q Consensus       555 ~~~~latgs~Dg~I~iwD~~~---~-----~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s-------g~  619 (711)
                      +|++|++++-.-.|++|.+--   |     ..+..++||.+.|..++||++.+.+++.+.||+++|||+.-       .+
T Consensus       239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk  318 (420)
T KOG2096|consen  239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK  318 (420)
T ss_pred             CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence            999999999999999998632   2     23456789999999999999999999999999999999742       22


Q ss_pred             EEEEe----eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcc
Q psy14440        620 LLTLL----TGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASP  695 (711)
Q Consensus       620 ~i~~l----~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~p  695 (711)
                      .+++.    ...++.-..|+++|+|..||.+. ..+++++..+........                      -..|.+.
T Consensus       319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~----------------------e~~h~~~  375 (420)
T KOG2096|consen  319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPEL----------------------EDIHSTT  375 (420)
T ss_pred             HhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhH----------------------HHhhcCc
Confidence            23332    12234445899999999998765 558999987764432221                      2336788


Q ss_pred             eEEEEEccCCeeee
Q psy14440        696 LLHLIFSRRNILLR  709 (711)
Q Consensus       696 V~~v~Fs~~n~lla  709 (711)
                      |.+++|+++|.++|
T Consensus       376 Is~is~~~~g~~~a  389 (420)
T KOG2096|consen  376 ISSISYSSDGKYIA  389 (420)
T ss_pred             eeeEEecCCCcEEe
Confidence            99999999999998

>KOG0650|consensus

Probab=99.89  E-value=5e-22  Score=210.99  Aligned_cols=280  Identities=17%  Similarity=0.274  Sum_probs=225.5

Q ss_pred             CCceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce----------eeeccCcc--cccccccc-----
Q psy14440        375 LPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKL----------KAMKSSDQ--LQDIEMEC-----  437 (711)
Q Consensus       375 lps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~----------~~~~~~~~--~~~l~~~~-----  437 (711)
                      +|..|-..+.+|.+.|.|+...+.|.+||+|+.||+|+||.+.++..          .++.++..  ...++++.     
T Consensus       388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~  467 (733)
T KOG0650|consen  388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVL  467 (733)
T ss_pred             CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceE
Confidence            47788888999999999999999999999999999999999987642          22222221  11121111     


Q ss_pred             ---------------------------CCcEEEEEecCC----CeeEEEeecccCCEEEEEEcCCCCEEEEEeCC---Ce
Q psy14440        438 ---------------------------DDILVRIMDERN----AETTRTLVGHEGPVRKLSFSPDRSLLLSCSQD---NT  483 (711)
Q Consensus       438 ---------------------------~d~~i~i~d~~~----~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~D---g~  483 (711)
                                                 .+..+..|....    ...++....|...|..+.|+..|.||++...+   ..
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~  547 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS  547 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence                                       123344564331    11245666789999999999999999998664   45


Q ss_pred             EEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEE
Q psy14440        484 IRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS  563 (711)
Q Consensus       484 V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs  563 (711)
                      |.|+++.......-|+-..+.|.++.|+|...+|++++. ..|++||+.....++.+......|..++.||+|..|++|+
T Consensus       548 VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs  626 (733)
T KOG0650|consen  548 VLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS  626 (733)
T ss_pred             EEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence            899999877766667666788999999999989888874 6899999998877777777778899999999999999999


Q ss_pred             cCCcEEEEECCCC-cEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC------CC---eEEEEeeCCCCC---
Q psy14440        564 SDRTIRLWDCVTG-SHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS------NG---HLLTLLTGHTDV---  630 (711)
Q Consensus       564 ~Dg~I~iwD~~~~-~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~------sg---~~i~~l~~h~~~---  630 (711)
                      .|+.+..||+.-+ +..+++..|...+++++|++.-.++++|+.||++.||.-.      ..   -.++.+++|...   
T Consensus       627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~  706 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDL  706 (733)
T ss_pred             CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeeccc
Confidence            9999999999765 5677888899999999999999999999999999999522      11   246778888644   


Q ss_pred             -EEEEEEeCCCCEEEEEeCCCcEEEE
Q psy14440        631 -VRALCFSRDGNILASSGQDCSVKLW  655 (711)
Q Consensus       631 -V~sl~fspdg~~Lasgs~Dg~V~iW  655 (711)
                       |.+..|+|..-+|+++|+||+|++|
T Consensus       707 gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  707 GVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ceEeecccCCCceEEecCCCceEEee
Confidence             8899999999999999999999998

>KOG0270|consensus

Probab=99.89  E-value=6.3e-22  Score=204.43  Aligned_cols=261  Identities=20%  Similarity=0.280  Sum_probs=191.9

Q ss_pred             EEEEECC-------CCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCE
Q psy14440        391 TCAEISE-------DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV  463 (711)
Q Consensus       391 ~~l~fs~-------dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V  463 (711)
                      .|++|..       -|+++|.|+.|..|.|||++-..-.       ...+..++.....   ....++....-.+|+..|
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v-------~P~~~LGs~~sk~---~~k~~k~~~~~~gHTdav  246 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAV-------LPCVTLGSKASKK---KKKKGKRSNSASGHTDAV  246 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEecccccccc-------ccceeechhhhhh---hhhhcccccccccchHHH
Confidence            4666653       3589999999999999998532100       0001111000000   001112222345799999


Q ss_pred             EEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCceeEEee
Q psy14440        464 RKLSFSPDR-SLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMARLWATDSYHPLRLFV  541 (711)
Q Consensus       464 ~~l~fspdg-~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~  541 (711)
                      .+++|+.+- +.|+|||.|.+|++||+.++++..++..|+..|.++.|++ ...++++|+.|++|.+.|++........-
T Consensus       247 l~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w  326 (463)
T KOG0270|consen  247 LALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW  326 (463)
T ss_pred             HHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE
Confidence            999998754 4789999999999999999999999999999999999999 55799999999999999998432222222


Q ss_pred             cCCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCC-cEEEEeeCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCC
Q psy14440        542 GHYSDVDCVQFHPN-SNYVATGSSDRTIRLWDCVTG-SHVRLLTGHKAPVYALSFSVC-GRFLASAGGDGNVHMWDLSNG  618 (711)
Q Consensus       542 ~h~~~V~~v~~sp~-~~~latgs~Dg~I~iwD~~~~-~~v~~~~~h~~~I~~la~spd-g~~Lasgs~Dg~I~iwDl~sg  618 (711)
                      ...+.|..++|++. .+++++++.||+|+-+|+|.. +++.+++.|.+.|.+|+++.. -.+|++++.|+.|++|++..-
T Consensus       327 k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  327 KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence            24578999999995 456788889999999999975 899999999999999999875 457889999999999998643


Q ss_pred             --eEEEEeeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCC
Q psy14440        619 --HLLTLLTGHTDVVRALCFSRDG-NILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       619 --~~i~~l~~h~~~V~sl~fspdg-~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                        +.+..-.-.-+...|.++.++- -+|+.||..+.++|||+.+..
T Consensus       407 ~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  407 SPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             CCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence              3332222112445666777754 367888888899999987643

>KOG0302|consensus

Probab=99.89  E-value=1.7e-21  Score=197.43  Aligned_cols=254  Identities=26%  Similarity=0.399  Sum_probs=185.4

Q ss_pred             CCCceEEEEECCC--CCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCE
Q psy14440        386 ARQQVTCAEISED--VSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV  463 (711)
Q Consensus       386 h~~~V~~l~fs~d--g~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V  463 (711)
                      |.+.|+.+.-++-  ..+.|+-+..|.|+||++...- .++.            +.+ +.+-+ ...+.+.++.+|.+.=
T Consensus       150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l-~~l~------------~~~-~~~~~-s~~~Pl~t~~ghk~EG  214 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL-NALS------------EPG-LEVKD-SEFRPLFTFNGHKGEG  214 (440)
T ss_pred             cccccceeeecccCCcceeeeecccCcEEEEEchhhh-hhhc------------Ccc-ccccc-cccCceEEecccCccc
Confidence            3444444444432  3445555667899999985321 1110            000 00111 4556788999999999


Q ss_pred             EEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEE---EEEecCCCCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCc--e
Q psy14440        464 RKLSFSPDR-SLLLSCSQDNTIRLWSLLLWRCL---VVYKGHGHPVWDIKFSPH-GYYFASAGHDRMARLWATDSYH--P  536 (711)
Q Consensus       464 ~~l~fspdg-~~L~s~s~Dg~V~iwdl~t~~~~---~~~~~h~~~V~~v~~sp~-g~~l~sgs~Dg~i~lwd~~~~~--~  536 (711)
                      ++++|||-. ..|+||.--+.|++|...++.-.   ..+.+|...|-+++|||. ...|++||.||+|+|||++.+.  .
T Consensus       215 y~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~  294 (440)
T KOG0302|consen  215 YGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA  294 (440)
T ss_pred             eeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc
Confidence            999999932 25888877788999998775432   245679999999999994 4699999999999999999872  2


Q ss_pred             eEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC---CcEEEEeeCCCCCeEEEEEecC-CCEEEEEeCCCcEEE
Q psy14440        537 LRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT---GSHVRLLTGHKAPVYALSFSVC-GRFLASAGGDGNVHM  612 (711)
Q Consensus       537 ~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~---~~~v~~~~~h~~~I~~la~spd-g~~Lasgs~Dg~I~i  612 (711)
                      ......|.++|+.|.|+-+..+||+|+.||+++|||+++   ++.+..|+-|+.+|++|.|+|. ...|+++|.|..|.|
T Consensus       295 ~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  295 AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI  374 (440)
T ss_pred             eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence            333478999999999999888999999999999999985   5678999999999999999985 457888889999999


Q ss_pred             EECCCCeE-----------E-----EEeeCC--CCCEEEEEEeCC-CCEEEEEeCCCcEEEE
Q psy14440        613 WDLSNGHL-----------L-----TLLTGH--TDVVRALCFSRD-GNILASSGQDCSVKLW  655 (711)
Q Consensus       613 wDl~sg~~-----------i-----~~l~~h--~~~V~sl~fspd-g~~Lasgs~Dg~V~iW  655 (711)
                      ||+.-..-           +     ..+--|  ...|..+.|++. ..+|++.+.||- .||
T Consensus       375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf  435 (440)
T KOG0302|consen  375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF  435 (440)
T ss_pred             EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence            99853211           0     011123  246788999985 347888888874 344

>KOG0302|consensus

Probab=99.88  E-value=9.3e-22  Score=199.24  Aligned_cols=209  Identities=26%  Similarity=0.496  Sum_probs=173.2

Q ss_pred             EEEeecccCCEEEEEEcCCC--CEEEEEeCCCeEEEEECC----------------CCeEEEEEecCCCCEEEEEEcCCC
Q psy14440        453 TRTLVGHEGPVRKLSFSPDR--SLLLSCSQDNTIRLWSLL----------------LWRCLVVYKGHGHPVWDIKFSPHG  514 (711)
Q Consensus       453 ~~~l~~h~~~V~~l~fspdg--~~L~s~s~Dg~V~iwdl~----------------t~~~~~~~~~h~~~V~~v~~sp~g  514 (711)
                      .....+|.+.|..+.-++-+  .+.++-+..|.|.||++.                ..+.+.++.+|...=+.++|||-.
T Consensus       144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~  223 (440)
T KOG0302|consen  144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK  223 (440)
T ss_pred             cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence            34455788888888777754  456666788999999983                245678888999999999999932


Q ss_pred             -CEEEEEECCCeEEEEECCCCc---eeEEeecCCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCC---cEEEEeeCCC
Q psy14440        515 -YYFASAGHDRMARLWATDSYH---PLRLFVGHYSDVDCVQFHPN-SNYVATGSSDRTIRLWDCVTG---SHVRLLTGHK  586 (711)
Q Consensus       515 -~~l~sgs~Dg~i~lwd~~~~~---~~~~~~~h~~~V~~v~~sp~-~~~latgs~Dg~I~iwD~~~~---~~v~~~~~h~  586 (711)
                       ..+++|.--+.|++|...++.   -.+-|.+|...|..++|+|. ...||+||.||+|+|||++.+   .++.+ +.|.
T Consensus       224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~  302 (440)
T KOG0302|consen  224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHN  302 (440)
T ss_pred             ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccC
Confidence             358888888899999887753   22456789999999999995 567899999999999999998   44444 7899


Q ss_pred             CCeEEEEEecCCCEEEEEeCCCcEEEEECCC---CeEEEEeeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        587 APVYALSFSVCGRFLASAGGDGNVHMWDLSN---GHLLTLLTGHTDVVRALCFSRD-GNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       587 ~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s---g~~i~~l~~h~~~V~sl~fspd-g~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      +.|+.|.|+.+-.+||+|++||+++|||++.   ++.+..++.|..+|++|.|+|. ...|+++|.|..|.|||+..-..
T Consensus       303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence            9999999999888999999999999999975   6789999999999999999984 56888899999999999986544

>KOG1063|consensus

Probab=99.88  E-value=2.1e-21  Score=209.63  Aligned_cols=278  Identities=22%  Similarity=0.334  Sum_probs=225.5

Q ss_pred             EecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc--------e----------eeeccCccccccccccCCcEEEE
Q psy14440        383 LLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK--------L----------KAMKSSDQLQDIEMECDDILVRI  444 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~--------~----------~~~~~~~~~~~l~~~~~d~~i~i  444 (711)
                      +.||.+-|.++.|+|++..|.+++.|.++.+|.-....        +          ....++.+...+...+..|..++
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl  342 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL  342 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence            34999999999999999999999999999999876541        1          11122334445556667788899


Q ss_pred             EecCCC---eeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCeEEEEEecCCCCEEEEEEcCCCCEE
Q psy14440        445 MDERNA---ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL----LWRCLVVYKGHGHPVWDIKFSPHGYYF  517 (711)
Q Consensus       445 ~d~~~~---~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~----t~~~~~~~~~h~~~V~~v~~sp~g~~l  517 (711)
                      |.....   .......||.+.|++++|+|.|.+|++.|.|.|-|+|---    ++..+..-+-|...+.|++|-+....|
T Consensus       343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F  422 (764)
T KOG1063|consen  343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF  422 (764)
T ss_pred             EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence            973322   2334567999999999999999999999999999998653    344455556799999999999877799


Q ss_pred             EEEECCCeEEEEECCC-------------------------------------------Cc-------------------
Q psy14440        518 ASAGHDRMARLWATDS-------------------------------------------YH-------------------  535 (711)
Q Consensus       518 ~sgs~Dg~i~lwd~~~-------------------------------------------~~-------------------  535 (711)
                      ++|...+.+|+|+.-.                                           +.                   
T Consensus       423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e  502 (764)
T KOG1063|consen  423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE  502 (764)
T ss_pred             eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence            9999999999995321                                           00                   


Q ss_pred             --------------eeEEeecCCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCCCcEEEEeeCCCCCeEEEEEec
Q psy14440        536 --------------PLRLFVGHYSDVDCVQFHPNSNYVATGSSD-----RTIRLWDCVTGSHVRLLTGHKAPVYALSFSV  596 (711)
Q Consensus       536 --------------~~~~~~~h~~~V~~v~~sp~~~~latgs~D-----g~I~iwD~~~~~~v~~~~~h~~~I~~la~sp  596 (711)
                                    .+..+.||...|.|++.+|+++++|+++..     ..|++|+..+...+..+.+|.-.|+.++|||
T Consensus       503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp  582 (764)
T KOG1063|consen  503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP  582 (764)
T ss_pred             CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence                          011233799999999999999999999854     3599999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCe----EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        597 CGRFLASAGGDGNVHMWDLSNGH----LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       597 dg~~Lasgs~Dg~I~iwDl~sg~----~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      ||++|++.+.|.++.+|......    .....+.|+.-|++.+|+|++.+++|+|.|.+|+||.....
T Consensus       583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            99999999999999999875432    23446789999999999999999999999999999998876

>KOG2106|consensus

Probab=99.88  E-value=4.5e-20  Score=192.86  Aligned_cols=311  Identities=21%  Similarity=0.312  Sum_probs=233.9

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee---------------eccCccccccccccCCcEEEEEecC
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKA---------------MKSSDQLQDIEMECDDILVRIMDER  448 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~---------------~~~~~~~~~l~~~~~d~~i~i~d~~  448 (711)
                      ...++.|..++|+|.+.-|++....|.+.+|++.++.+..               +.+ ........+..+|.|.||+..
T Consensus       197 k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F-~engdviTgDS~G~i~Iw~~~  275 (626)
T KOG2106|consen  197 KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF-LENGDVITGDSGGNILIWSKG  275 (626)
T ss_pred             eeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE-cCCCCEEeecCCceEEEEeCC
Confidence            3456778999999987766666677899999997765332               111 123456678889999999999


Q ss_pred             CCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------------------------
Q psy14440        449 NAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW------------------------------------  492 (711)
Q Consensus       449 ~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~------------------------------------  492 (711)
                      +.+..+....|.+.|.+++...+|. |+||+.|..|..||-.-.                                    
T Consensus       276 ~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G  354 (626)
T KOG2106|consen  276 TNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG  354 (626)
T ss_pred             CceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEe
Confidence            8888888889999999999999996 556999999999983100                                    


Q ss_pred             ----eEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcE
Q psy14440        493 ----RCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTI  568 (711)
Q Consensus       493 ----~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I  568 (711)
                          .......+|....|.++.+|+...+++++.|+++++|+  ..+++.... -..++.|+.|||.| .+|.|+..|..
T Consensus       355 t~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w  430 (626)
T KOG2106|consen  355 TLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRW  430 (626)
T ss_pred             eecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceE
Confidence                00122347888999999999999999999999999999  334433322 34678999999999 99999999999


Q ss_pred             EEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeEEEEe-eCCCCCEEEEEEeCCCCEEEEE
Q psy14440        569 RLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN-GHLLTLL-TGHTDVVRALCFSRDGNILASS  646 (711)
Q Consensus       569 ~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s-g~~i~~l-~~h~~~V~sl~fspdg~~Lasg  646 (711)
                      .+.|..+...+..-.. ..++++++|+|+|.+||.|+.|+.|+||-+.. |...... +.|.+.|+.|.||.|+++|.+-
T Consensus       431 ~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~  509 (626)
T KOG2106|consen  431 FVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSN  509 (626)
T ss_pred             EEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEec
Confidence            9999998666655554 89999999999999999999999999998864 4444443 3345899999999999999999


Q ss_pred             eCCCcEEEEeCCCCCCccCcccccccccccccccc----ccceeeecccCCcceEEEEEccCCeeee-C
Q psy14440        647 GQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSS----LAYLVRSYKTKASPLLHLIFSRRNILLR-G  710 (711)
Q Consensus       647 s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~t~~~pV~~v~Fs~~n~lla-G  710 (711)
                      +.|-.|-.|.-....+...        ..++++..    .++.+.. -++.+-|..++-+....+|| |
T Consensus       510 S~d~eiLyW~~~~~~~~ts--------~kDvkW~t~~c~lGF~v~g-~s~~t~i~a~~rs~~~~~lA~g  569 (626)
T KOG2106|consen  510 SGDYEILYWKPSECKQITS--------VKDVKWATYTCTLGFEVFG-GSDGTDINAVARSHCEKLLASG  569 (626)
T ss_pred             cCceEEEEEccccCcccce--------ecceeeeeeEEEEEEEEec-ccCCchHHHhhhhhhhhhhhcc
Confidence            9999999994332222111        11222211    2222332 45566777777777777777 5

>KOG0294|consensus

Probab=99.88  E-value=6e-21  Score=189.59  Aligned_cols=203  Identities=23%  Similarity=0.364  Sum_probs=174.4

Q ss_pred             EEEecCCCceEEEEECCCCC--EEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        381 YTLLNARQQVTCAEISEDVS--ILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~--~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      -++..|.+.|+|+.|.++.+  .|++|+.||.|.+|+..                               .......+++
T Consensus        77 g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-------------------------------~W~~~~slK~  125 (362)
T KOG0294|consen   77 GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-------------------------------SWELLKSLKA  125 (362)
T ss_pred             cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC-------------------------------CeEEeeeecc
Confidence            35788999999999999876  89999999999999974                               4467789999


Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeE
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLR  538 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~  538 (711)
                      |.+.|+.++.+|.|++-++.+.|+.++.||+-+|+.-...+- ....+.|.|+|.|.+|+.++.+ .|-+|.+++.+..+
T Consensus       126 H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~  203 (362)
T KOG0294|consen  126 HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFR  203 (362)
T ss_pred             cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhh
Confidence            999999999999999999999999999999998887666653 2233449999999999998865 58899998876665


Q ss_pred             EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEE--ecCCCEEEEEeCCCcEEEEECC
Q psy14440        539 LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSF--SVCGRFLASAGGDGNVHMWDLS  616 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~--spdg~~Lasgs~Dg~I~iwDl~  616 (711)
                      .+.. ...+.|+.|- ++.+|++|.+|+.|++||..++.+...|.+|...|.++.+  .+++.+|++++.||.|+|||++
T Consensus       204 ~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  204 EIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID  281 (362)
T ss_pred             hhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence            5543 3567788886 7889999999999999999999999999999999999984  4678899999999999999997


Q ss_pred             CC
Q psy14440        617 NG  618 (711)
Q Consensus       617 sg  618 (711)
                      ..
T Consensus       282 ~~  283 (362)
T KOG0294|consen  282 ME  283 (362)
T ss_pred             cc
Confidence            65

>KOG1274|consensus

Probab=99.88  E-value=5.4e-21  Score=212.43  Aligned_cols=235  Identities=20%  Similarity=0.247  Sum_probs=201.8

Q ss_pred             eeccCccccccccccCCcEEEEEecCCC-eeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q psy14440        423 AMKSSDQLQDIEMECDDILVRIMDERNA-ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH  501 (711)
Q Consensus       423 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h  501 (711)
                      .+.+..++..|.+.+.++.|++|+..+. +.-..+..|...|++++..  +.+|++|+.+++|.+|.+..++.-..+...
T Consensus        18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf   95 (933)
T KOG1274|consen   18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARF   95 (933)
T ss_pred             EEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeee
Confidence            3444455567788889999999987666 4444444478888888874  559999999999999999887766556556


Q ss_pred             CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE
Q psy14440        502 GHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRL  581 (711)
Q Consensus       502 ~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~  581 (711)
                      .-++.+++|+.+|+++|.||.|-.|++.++......+.+.+|.++|.++.|+|++++||+.+.||+|++||+.++.+..+
T Consensus        96 tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t  175 (933)
T KOG1274|consen   96 TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT  175 (933)
T ss_pred             eccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             eeCC--------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC--CCCCEEEEEEeCCCCEEEEEeCCCc
Q psy14440        582 LTGH--------KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG--HTDVVRALCFSRDGNILASSGQDCS  651 (711)
Q Consensus       582 ~~~h--------~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~--h~~~V~sl~fspdg~~Lasgs~Dg~  651 (711)
                      +.+-        ...+..++|+|+|..++..+.|+.|++|+..++.....++.  +...+..++|+|+|.|||+++.||.
T Consensus       176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~  255 (933)
T KOG1274|consen  176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ  255 (933)
T ss_pred             cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCc
Confidence            6531        34567789999988888888999999999999988877763  4455999999999999999999999


Q ss_pred             EEEEeCCC
Q psy14440        652 VKLWDFAK  659 (711)
Q Consensus       652 V~iWdl~~  659 (711)
                      |-|||+.+
T Consensus       256 I~vWnv~t  263 (933)
T KOG1274|consen  256 ILVWNVDT  263 (933)
T ss_pred             EEEEeccc
Confidence            99999986

>KOG1063|consensus

Probab=99.88  E-value=8.3e-21  Score=205.03  Aligned_cols=308  Identities=23%  Similarity=0.339  Sum_probs=225.7

Q ss_pred             EEEEEecCCCceEEEEECCCCC---EEEEEeCCCeEEEEeCCCCceee-eccCccccccccccCCcEEEEEe-cCC--Ce
Q psy14440        379 ACYTLLNARQQVTCAEISEDVS---ILAVGFSESYIKLWSLVPQKLKA-MKSSDQLQDIEMECDDILVRIMD-ERN--AE  451 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~---~LatG~~dg~I~vWdl~~~~~~~-~~~~~~~~~l~~~~~d~~i~i~d-~~~--~~  451 (711)
                      ....+.||.+-|.+++|..-+.   +||+|+.|.+||||.+.-..... .....   .+.+-.+ ..+.... .-.  ..
T Consensus       183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~---~~t~~~~-~~~f~~l~~i~~~is  258 (764)
T KOG1063|consen  183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED---SLTTLSN-LPVFMILEEIQYRIS  258 (764)
T ss_pred             EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc---ccccccC-CceeeeeeeEEEEEe
Confidence            4456899999999999997554   89999999999999984322111 00000   0000011 1111100 000  00


Q ss_pred             eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eEEEEE---ecCCCCEEEEEEcCCCCEEEEEECCC
Q psy14440        452 TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW----RCLVVY---KGHGHPVWDIKFSPHGYYFASAGHDR  524 (711)
Q Consensus       452 ~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~----~~~~~~---~~h~~~V~~v~~sp~g~~l~sgs~Dg  524 (711)
                      .-..+.||...|+++.|+|.+..|+++|.|.++.+|.-.+.    .....+   .+.....++..|+++++.|++-+..|
T Consensus       259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G  338 (764)
T KOG1063|consen  259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG  338 (764)
T ss_pred             hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence            11234599999999999999999999999999999987543    222222   23355689999999999999999999


Q ss_pred             eEEEEECCC---CceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-------------------------C-
Q psy14440        525 MARLWATDS---YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV-------------------------T-  575 (711)
Q Consensus       525 ~i~lwd~~~---~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~-------------------------~-  575 (711)
                      ..++|....   ......+.||...|..|+|+|.|.||++.+.|.|-|+|---                         + 
T Consensus       339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~  418 (764)
T KOG1063|consen  339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE  418 (764)
T ss_pred             cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence            999998332   23455677999999999999999999999999888875311                         0 


Q ss_pred             ---------CcEEE------------------------------------------------------------------
Q psy14440        576 ---------GSHVR------------------------------------------------------------------  580 (711)
Q Consensus       576 ---------~~~v~------------------------------------------------------------------  580 (711)
                               .+.+|                                                                  
T Consensus       419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~  498 (764)
T KOG1063|consen  419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC  498 (764)
T ss_pred             CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence                     00001                                                                  


Q ss_pred             ---------------------EeeCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeEEEEeeCCCCCEEEE
Q psy14440        581 ---------------------LLTGHKAPVYALSFSVCGRFLASAGGD-----GNVHMWDLSNGHLLTLLTGHTDVVRAL  634 (711)
Q Consensus       581 ---------------------~~~~h~~~I~~la~spdg~~Lasgs~D-----g~I~iwDl~sg~~i~~l~~h~~~V~sl  634 (711)
                                           .+.||...|++++.+|+|+++||++..     ..|++|+..+...+..+.+|.-.|+.|
T Consensus       499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l  578 (764)
T KOG1063|consen  499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL  578 (764)
T ss_pred             hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence                                 034677889999999999999999854     369999999999999999999999999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        635 CFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       635 ~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      +|||||++|++.|.|.++.+|...+...                   ........+.|+.-|....|+|+..++|
T Consensus       579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~-------------------~e~~fa~~k~HtRIIWdcsW~pde~~Fa  634 (764)
T KOG1063|consen  579 AFSPDGRYLLSVSRDRTVSLYEVQEDIK-------------------DEFRFACLKAHTRIIWDCSWSPDEKYFA  634 (764)
T ss_pred             EECCCCcEEEEeecCceEEeeeeecccc-------------------hhhhhccccccceEEEEcccCcccceeE
Confidence            9999999999999999999999854211                   0111233666778888888888888776

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=1.3e-19  Score=190.37  Aligned_cols=249  Identities=16%  Similarity=0.146  Sum_probs=188.5

Q ss_pred             cccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEc
Q psy14440        433 IEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLL-LSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFS  511 (711)
Q Consensus       433 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L-~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~s  511 (711)
                      ++..+.++.+.+||..+++....+.+|.. +.+++|+++++.+ ++++.++.|++||..+++.+..+..+.. +..++|+
T Consensus         4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~   81 (300)
T TIGR03866         4 YVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALH   81 (300)
T ss_pred             EEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEEC
Confidence            34566789999999998888888876654 6789999999976 5667889999999999888777765443 5678999


Q ss_pred             CCCCEEEEE-ECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCC-cEEEEECCCCcEEEEeeCCCCCe
Q psy14440        512 PHGYYFASA-GHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR-TIRLWDCVTGSHVRLLTGHKAPV  589 (711)
Q Consensus       512 p~g~~l~sg-s~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg-~I~iwD~~~~~~v~~~~~h~~~I  589 (711)
                      ++++.++++ +.|+.+++||+.+.+.+..+.. ...+.+++|+|++.++++++.++ .+.+||..+++.+..+.. ...+
T Consensus        82 ~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  159 (300)
T TIGR03866        82 PNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRP  159 (300)
T ss_pred             CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCc
Confidence            999877554 5689999999998877776653 34578899999999999988765 467889998877665442 3346


Q ss_pred             EEEEEecCCCEEEEE-eCCCcEEEEECCCCeEEEEeeCCCC-------CEEEEEEeCCCCEEEE-EeCCCcEEEEeCCCC
Q psy14440        590 YALSFSVCGRFLASA-GGDGNVHMWDLSNGHLLTLLTGHTD-------VVRALCFSRDGNILAS-SGQDCSVKLWDFAKL  660 (711)
Q Consensus       590 ~~la~spdg~~Lasg-s~Dg~I~iwDl~sg~~i~~l~~h~~-------~V~sl~fspdg~~Las-gs~Dg~V~iWdl~~~  660 (711)
                      .+++|+++|++|+++ ..+|.|++||+.+++.+..+..+..       ....++|+++|+++++ .+.+++|.+||+.+.
T Consensus       160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~  239 (300)
T TIGR03866       160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY  239 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            789999999988655 4689999999999988777653321       2346889999998554 455778999998642


Q ss_pred             CCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        661 SDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      ..                       +... .....+.++.|+++|.+|+
T Consensus       240 ~~-----------------------~~~~-~~~~~~~~~~~~~~g~~l~  264 (300)
T TIGR03866       240 EV-----------------------LDYL-LVGQRVWQLAFTPDEKYLL  264 (300)
T ss_pred             cE-----------------------EEEE-EeCCCcceEEECCCCCEEE
Confidence            21                       1111 1224577888988888765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=5.3e-19  Score=190.94  Aligned_cols=279  Identities=39%  Similarity=0.618  Sum_probs=233.0

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc--eeeecc------------Ccccc-cccc-ccCCcEEEEE
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK--LKAMKS------------SDQLQ-DIEM-ECDDILVRIM  445 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~--~~~~~~------------~~~~~-~l~~-~~~d~~i~i~  445 (711)
                      .+..|...|.++.|..++..++.++.|+.+.+|+.....  +..+..            ..+.. .+.. ...++.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            467888999999999999999999999999999987763  222222            11222 2223 2338899999


Q ss_pred             ecCC-CeeEEEeecccCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCC-EEEEEEC
Q psy14440        446 DERN-AETTRTLVGHEGPVRKLSFSPDRSLLLSCSQ-DNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGY-YFASAGH  522 (711)
Q Consensus       446 d~~~-~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~-Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~-~l~sgs~  522 (711)
                      +... ......+.+|...|.+++|++++..+++++. |+.+++|++..+..+..+.+|...|.+++|++++. ++++++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  219 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS  219 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence            9888 8888999999999999999999999998886 99999999999889999999999999999999997 5666699


Q ss_pred             CCeEEEEECCCCceeE-EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEeeCCCCCeEEEEEecCCCE
Q psy14440        523 DRMARLWATDSYHPLR-LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH-VRLLTGHKAPVYALSFSVCGRF  600 (711)
Q Consensus       523 Dg~i~lwd~~~~~~~~-~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~-v~~~~~h~~~I~~la~spdg~~  600 (711)
                      |+.+++||...+..+. .+.+|...+ ...|++++.++++++.|+.+++||+..... +..+.+|...+.++.|+|++..
T Consensus       220 d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  298 (466)
T COG2319         220 DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL  298 (466)
T ss_pred             CCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCE
Confidence            9999999988777777 688888876 448999998999999999999999987765 5555688999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEee--CCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEeCCCCC
Q psy14440        601 LASAGGDGNVHMWDLSNGHLLTLLT--GHTDVVRALCFSRDGNILASS-GQDCSVKLWDFAKLS  661 (711)
Q Consensus       601 Lasgs~Dg~I~iwDl~sg~~i~~l~--~h~~~V~sl~fspdg~~Lasg-s~Dg~V~iWdl~~~~  661 (711)
                      +++++.|+.+.+||+.+........  .|...+..+.|.+++..++.+ ..|+.+++|++....
T Consensus       299 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         299 LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            9999999999999999888777766  888889999994332555555 688999999998765

>KOG0647|consensus

Probab=99.87  E-value=1.4e-20  Score=185.98  Aligned_cols=231  Identities=19%  Similarity=0.241  Sum_probs=189.8

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccC
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEG  461 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~  461 (711)
                      ...+|.+.|.|++|+.||+.+++|+.|+.+++||+.++.                                ...+..|.+
T Consensus        67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q--------------------------------~~~v~~Hd~  114 (347)
T KOG0647|consen   67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ--------------------------------VSQVAAHDA  114 (347)
T ss_pred             hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC--------------------------------eeeeeeccc
Confidence            346789999999999999999999999999999996543                                345567999


Q ss_pred             CEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeE-
Q psy14440        462 PVRKLSFSPDRS--LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLR-  538 (711)
Q Consensus       462 ~V~~l~fspdg~--~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~-  538 (711)
                      +|.++.|-+...  .|++||.|++|+.||++....+.++.- ...++++..-  ...++++..++.|.+|++++..... 
T Consensus       115 pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k  191 (347)
T KOG0647|consen  115 PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFK  191 (347)
T ss_pred             ceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhh
Confidence            999999987665  899999999999999998888887763 4556666543  3478889999999999997653221 


Q ss_pred             -EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC--cEEEEeeCCCC---------CeEEEEEecCCCEEEEEeC
Q psy14440        539 -LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG--SHVRLLTGHKA---------PVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       539 -~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~--~~v~~~~~h~~---------~I~~la~spdg~~Lasgs~  606 (711)
                       .-..-.-.+.||+...+....|.|+.+|.|.|..+..+  +.-..|+.|+.         .|++|+|+|....|+++|.
T Consensus       192 ~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs  271 (347)
T KOG0647|consen  192 RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS  271 (347)
T ss_pred             hhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecC
Confidence             11112345889999998888899999999999999876  33445666652         5788999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEe
Q psy14440        607 DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSG  647 (711)
Q Consensus       607 Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs  647 (711)
                      ||++.+||-.....++....|..+|++.+|+.+|.++|-+.
T Consensus       272 DGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  272 DGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             CceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            99999999988888999999999999999999999887653

>KOG1036|consensus

Probab=99.87  E-value=2e-20  Score=185.83  Aligned_cols=231  Identities=20%  Similarity=0.294  Sum_probs=189.5

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccC
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEG  461 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~  461 (711)
                      -...|...|.+++|.++ ..+++|+.||.|+.+|+.++.                                ...+..|..
T Consensus        49 ~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~--------------------------------~~~igth~~   95 (323)
T KOG1036|consen   49 LKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN--------------------------------EDQIGTHDE   95 (323)
T ss_pred             hheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc--------------------------------ceeeccCCC
Confidence            34678899999999985 567899999999999986543                                234556999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEE--
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL--  539 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~--  539 (711)
                      +|.|+.+++....+++||.|++|++||.+.......+.. ...|.++..+  |+.|++|+.|..+.+||+++......  
T Consensus        96 ~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~r  172 (323)
T KOG1036|consen   96 GIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRR  172 (323)
T ss_pred             ceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhc
Confidence            999999999888999999999999999987555555543 4478888765  77999999999999999987543221  


Q ss_pred             eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC----cEEEEeeCCC---------CCeEEEEEecCCCEEEEEeC
Q psy14440        540 FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG----SHVRLLTGHK---------APVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       540 ~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~----~~v~~~~~h~---------~~I~~la~spdg~~Lasgs~  606 (711)
                      -..-.-.+.||++-|++.-++++|-||.|.+=.+...    +....|+.|.         .+|++|+|+|-...|||||.
T Consensus       173 eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs  252 (323)
T KOG1036|consen  173 ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS  252 (323)
T ss_pred             cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCC
Confidence            1123456899999999988999999999988666555    3344566664         37999999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC
Q psy14440        607 DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       607 Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~  648 (711)
                      ||.|.+||+.+.+.+..+......|.+++|+.+|..||+|+.
T Consensus       253 DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  253 DGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            999999999999999999888788999999999999999874

>KOG0321|consensus

Probab=99.87  E-value=5.6e-21  Score=204.65  Aligned_cols=255  Identities=20%  Similarity=0.299  Sum_probs=194.6

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      ++.+..|.+.|..+.|-|....|++++.|.+|++||+.+.++..                             ...+.||
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G-----------------------------~~~~~GH  143 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG-----------------------------GRLNLGH  143 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec-----------------------------ceeeccc
Confidence            56678899999999999977889999999999999997654321                             2257899


Q ss_pred             cCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe---------------------------EEEEEecCCCCEEE---E
Q psy14440        460 EGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLLLWR---------------------------CLVVYKGHGHPVWD---I  508 (711)
Q Consensus       460 ~~~V~~l~fspdg-~~L~s~s~Dg~V~iwdl~t~~---------------------------~~~~~~~h~~~V~~---v  508 (711)
                      .+.|.+++|.+.+ ..|++|+.||.|.|||++-..                           .+...+.+...|.+   +
T Consensus       144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv  223 (720)
T KOG0321|consen  144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV  223 (720)
T ss_pred             ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence            9999999999965 478899999999999984221                           11222345555655   6


Q ss_pred             EEcCCCCEEEEEEC-CCeEEEEECCCCceeE------E--eecC---CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC
Q psy14440        509 KFSPHGYYFASAGH-DRMARLWATDSYHPLR------L--FVGH---YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG  576 (711)
Q Consensus       509 ~~sp~g~~l~sgs~-Dg~i~lwd~~~~~~~~------~--~~~h---~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~  576 (711)
                      .+..|...||++|. |+.|+|||++......      .  +..|   .-.+.++.....|.||++.+.|++|++||+.+-
T Consensus       224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~  303 (720)
T KOG0321|consen  224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL  303 (720)
T ss_pred             EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence            66678889999987 9999999998754322      1  1122   335778888888999999999999999999764


Q ss_pred             c--EEEEeeCCCCC--eEEEEEecCCCEEEEEeCCCcEEEEECCCCe-EEEEeeCCCCCEEEEEEeCC-CCEEEEEeCCC
Q psy14440        577 S--HVRLLTGHKAP--VYALSFSVCGRFLASAGGDGNVHMWDLSNGH-LLTLLTGHTDVVRALCFSRD-GNILASSGQDC  650 (711)
Q Consensus       577 ~--~v~~~~~h~~~--I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~-~i~~l~~h~~~V~sl~fspd-g~~Lasgs~Dg  650 (711)
                      .  .+..+.++...  -..-..+||+.+|++|+.|...++|.+.+.+ ....+.||.-.|++++|.+. -.-+++|+.|.
T Consensus       304 s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~  383 (720)
T KOG0321|consen  304 SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDF  383 (720)
T ss_pred             CcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCc
Confidence            3  34455554322  1123468999999999999999999998865 46677899999999999884 23567779999


Q ss_pred             cEEEEeCCCCCCc
Q psy14440        651 SVKLWDFAKLSDE  663 (711)
Q Consensus       651 ~V~iWdl~~~~~~  663 (711)
                      +++||++....++
T Consensus       384 ~~kiW~l~~~l~e  396 (720)
T KOG0321|consen  384 RVKIWRLSNGLEE  396 (720)
T ss_pred             ceEEEeccCchhh
Confidence            9999999665443

>KOG4227|consensus

Probab=99.87  E-value=1.2e-20  Score=191.21  Aligned_cols=308  Identities=14%  Similarity=0.208  Sum_probs=227.8

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      .|...+.+|.+.|+++.||.++++||+|+.|-.++||+++..-..                         .+.+.+....
T Consensus        47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~-------------------------k~~KPI~~~~  101 (609)
T KOG4227|consen   47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR-------------------------KTPKPIGVME  101 (609)
T ss_pred             hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh-------------------------cCCCCceecc
Confidence            455668999999999999999999999999999999998532111                         1223333322


Q ss_pred             -cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec--CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        458 -GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG--HGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       458 -~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~--h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                       .|...|.|++|...+++|++|+.+++|.+.|+++.+.+.++..  ..+.|+.+..+|..+.|++.+.+|.|.+||.+..
T Consensus       102 ~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~  181 (609)
T KOG4227|consen  102 HPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR  181 (609)
T ss_pred             CccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence             4668999999999999999999999999999999998888752  2358999999999999999999999999999865


Q ss_pred             c-eeE--EeecCCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcE-EEE---eeCC---CCCeEEEEEecCCCEEEE
Q psy14440        535 H-PLR--LFVGHYSDVDCVQFHPN-SNYVATGSSDRTIRLWDCVTGSH-VRL---LTGH---KAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       535 ~-~~~--~~~~h~~~V~~v~~sp~-~~~latgs~Dg~I~iwD~~~~~~-v~~---~~~h---~~~I~~la~spdg~~Las  603 (711)
                      . ++.  ...........+.|+|. ..+|++.+..+-+.+||.+.... +..   +.+-   ...-.++.|+++|..|.+
T Consensus       182 ~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ms  261 (609)
T KOG4227|consen  182 QNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMS  261 (609)
T ss_pred             CCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehh
Confidence            4 322  33345566889999994 56788999999999999876432 111   1121   223467889999998887


Q ss_pred             EeCCCcEEEEECCCCeEEEEeeCCC-------CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccc
Q psy14440        604 AGGDGNVHMWDLSNGHLLTLLTGHT-------DVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSAD  676 (711)
Q Consensus       604 gs~Dg~I~iwDl~sg~~i~~l~~h~-------~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~  676 (711)
                      --....-.+||+.+.++...-..|.       ..+.+++|.-|- .+++|+.+-.|++|.+....+..+...+.......
T Consensus       262 iRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~  340 (609)
T KOG4227|consen  262 IRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEM  340 (609)
T ss_pred             hhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhC
Confidence            7666666788988755432222332       246778887554 49999999999999998876665544433321111


Q ss_pred             cccccccceeeecccCCcceEEEEEccCCeeee--CC
Q psy14440        677 IKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR--GP  711 (711)
Q Consensus       677 ~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla--Ga  711 (711)
                      ....-....+..+++|.+-+..|+|++.+.+|+  |+
T Consensus       341 ~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGV  377 (609)
T KOG4227|consen  341 PSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGV  377 (609)
T ss_pred             chhheecceeEEEecccccccceeecCCcceEeccch
Confidence            111122344567899999999999999999888  74

>KOG2919|consensus

Probab=99.87  E-value=1.7e-20  Score=186.75  Aligned_cols=263  Identities=23%  Similarity=0.322  Sum_probs=208.2

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee-------------e-----------------ec-cCccccccc
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLK-------------A-----------------MK-SSDQLQDIE  434 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~-------------~-----------------~~-~~~~~~~l~  434 (711)
                      ..+-...+.|||||+.|.+-+.|..+++|++-..-..             .                 ++ ..++...++
T Consensus        48 p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a  127 (406)
T KOG2919|consen   48 PLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA  127 (406)
T ss_pred             chhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence            3345668899999999999999999999998321100             0                 00 112344567


Q ss_pred             cccCCcEEEEEecCCCeeEEEeec--ccC---CEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCeEEEEE-------ecC
Q psy14440        435 MECDDILVRIMDERNAETTRTLVG--HEG---PVRKLSFSPDRSLLLSCSQDNTIRLWSL-LLWRCLVVY-------KGH  501 (711)
Q Consensus       435 ~~~~d~~i~i~d~~~~~~~~~l~~--h~~---~V~~l~fspdg~~L~s~s~Dg~V~iwdl-~t~~~~~~~-------~~h  501 (711)
                      +.+.+.-|++||..+++....+++  |..   ...+++|++||..|++|- ...|++||+ +.|+-...+       .+.
T Consensus       128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq  206 (406)
T KOG2919|consen  128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQ  206 (406)
T ss_pred             eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccc
Confidence            778899999999999998777664  433   456899999999998875 567999999 444322221       123


Q ss_pred             CCCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCCC-cE
Q psy14440        502 GHPVWDIKFSPH-GYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS-DRTIRLWDCVTG-SH  578 (711)
Q Consensus       502 ~~~V~~v~~sp~-g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~-Dg~I~iwD~~~~-~~  578 (711)
                      .+-|.+++|+|. ...+++|+...++-||.-....++..+.+|.+.|+.++|+++|+.|++|+. |-.|..||++.. ..
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p  286 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP  286 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence            677899999994 459999999999999999999999999999999999999999999999985 778999999864 44


Q ss_pred             EEEeeCCCC-CeEEEEE--ecCCCEEEEEeCCCcEEEEECCC-CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC
Q psy14440        579 VRLLTGHKA-PVYALSF--SVCGRFLASAGGDGNVHMWDLSN-GHLLTLLTGHTDVVRALCFSRDGNILASSGQD  649 (711)
Q Consensus       579 v~~~~~h~~-~I~~la~--spdg~~Lasgs~Dg~I~iwDl~s-g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D  649 (711)
                      +..+..|.+ .-..|-|  .|+|++|++|+.||.|++||+++ |..+..+..|...|+.++++|--.++|+++..
T Consensus       287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            556666655 3334444  58899999999999999999998 78788888899999999999998888888754

>KOG4378|consensus

Probab=99.86  E-value=1e-20  Score=196.98  Aligned_cols=267  Identities=16%  Similarity=0.218  Sum_probs=208.7

Q ss_pred             CCceEEEEECCCCCE-EEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEE
Q psy14440        387 RQQVTCAEISEDVSI-LAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRK  465 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~-LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~  465 (711)
                      .-++.++.|+....+ +|+-+.|..|++|.-.+. +-                          +...++.+.|.  .-.|
T Consensus        34 ~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~~--------------------------~Vp~~~k~~gd--~~~C   84 (673)
T KOG4378|consen   34 EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-TP--------------------------EVPRVRKLTGD--NAFC   84 (673)
T ss_pred             CCcceeeeccccceEEEeecCCceeEEEecccCC-CC--------------------------ccceeeccccc--hHHH
Confidence            345899999987753 344556778888876432 00                          11112222222  3345


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecC-C
Q psy14440        466 LSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGH-Y  544 (711)
Q Consensus       466 l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h-~  544 (711)
                      ++......++++|+..+.|+|||++...+.+.+++|...|++|.++....|||+++..|.|.|..+.++.....|... .
T Consensus        85 v~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg  164 (673)
T KOG4378|consen   85 VACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG  164 (673)
T ss_pred             HhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC
Confidence            555555589999999999999999988888999999999999999999999999999999999999998877777654 3


Q ss_pred             CCeeEEEEcCCCCE-EEEEEcCCcEEEEECCCCcEEEEe-eCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEE
Q psy14440        545 SDVDCVQFHPNSNY-VATGSSDRTIRLWDCVTGSHVRLL-TGHKAPVYALSFSVC-GRFLASAGGDGNVHMWDLSNGHLL  621 (711)
Q Consensus       545 ~~V~~v~~sp~~~~-latgs~Dg~I~iwD~~~~~~v~~~-~~h~~~I~~la~spd-g~~Lasgs~Dg~I~iwDl~sg~~i  621 (711)
                      ..|.-+.|++..++ |.+++.+|.|.+||+.....+..+ ..|..+...|||+|. ..+|++.|.|+.|.+||+++.+..
T Consensus       165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~  244 (673)
T KOG4378|consen  165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST  244 (673)
T ss_pred             CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence            34568999997655 667889999999999877766554 579999999999995 567888999999999999987777


Q ss_pred             EEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEE
Q psy14440        622 TLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIF  701 (711)
Q Consensus       622 ~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~F  701 (711)
                      ..+. ...+..+++|+++|.+|+.|+..|.|..||++...                      ..|.+...|.+.|.+|+|
T Consensus       245 ~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k----------------------~Pv~v~sah~~sVt~vaf  301 (673)
T KOG4378|consen  245 DRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK----------------------APVAVRSAHDASVTRVAF  301 (673)
T ss_pred             ceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC----------------------CCceEeeecccceeEEEe
Confidence            6665 34578999999999999999999999999998643                      345556667777888888


Q ss_pred             ccCC
Q psy14440        702 SRRN  705 (711)
Q Consensus       702 s~~n  705 (711)
                      -+--
T Consensus       302 q~s~  305 (673)
T KOG4378|consen  302 QPSP  305 (673)
T ss_pred             eecc
Confidence            7653

>KOG0642|consensus

Probab=99.86  E-value=2.8e-21  Score=204.99  Aligned_cols=256  Identities=22%  Similarity=0.293  Sum_probs=200.9

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      +|+..|.+.|+.++|.+....|++++.||+|++|++...+    . +                  +....+.+.++++|.
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~----~-s------------------~~~~~epi~tfraH~  344 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK----K-S------------------AEKDVEPILTFRAHE  344 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC----C-c------------------cccceeeeEEEeccc
Confidence            3899999999999999999999999999999999993211    0 0                  112456788999999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------CeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL----------WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA  530 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t----------~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd  530 (711)
                      ++|.|++...++..+++|+.||+|+.|++..          ......+.||...||.+++|.....|++++.||++++|+
T Consensus       345 gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~  424 (577)
T KOG0642|consen  345 GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE  424 (577)
T ss_pred             CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence            9999999999999999999999999996631          123457889999999999999999999999999999999


Q ss_pred             CCCCceeEEeecC--CCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEeeCC-------CCCeEEEEEecCCCE
Q psy14440        531 TDSYHPLRLFVGH--YSDVDCVQFHPNS-NYVATGSSDRTIRLWDCVTGSHVRLLTGH-------KAPVYALSFSVCGRF  600 (711)
Q Consensus       531 ~~~~~~~~~~~~h--~~~V~~v~~sp~~-~~latgs~Dg~I~iwD~~~~~~v~~~~~h-------~~~I~~la~spdg~~  600 (711)
                      .....+ .+|...  .+--..+.+-... .+.++...-+.-.++|...+..++.+...       ...++.+.+.|.+.+
T Consensus       425 ~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~  503 (577)
T KOG0642|consen  425 PTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADI  503 (577)
T ss_pred             cCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCe
Confidence            887666 333321  1223344443221 12222222333334555555555555421       235778889999999


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        601 LASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       601 Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      .+++..|+.|+++|..+|+++.....|...++++++.++|-+|++|+.||.|++|.+...
T Consensus       504 ~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  504 TFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             eEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence            999999999999999999999999999999999999999999999999999999998653

>KOG0307|consensus

Probab=99.86  E-value=1.8e-21  Score=221.29  Aligned_cols=255  Identities=20%  Similarity=0.335  Sum_probs=208.7

Q ss_pred             cCCCceEEEEECCCCCE----EEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        385 NARQQVTCAEISEDVSI----LAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg~~----LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      .....-+.++|++.|..    ||.|..||.|.+|+...- +                        .......+.+...|+
T Consensus        62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~-~------------------------~~~~~~~la~~~~h~  116 (1049)
T KOG0307|consen   62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI-I------------------------ANASEEVLATKSKHT  116 (1049)
T ss_pred             cccccceeeeecccCCCccceeeccccCCceEEecchhh-c------------------------cCcchHHHhhhcccC
Confidence            34456788999987765    999999999999997531 0                        012334456677899


Q ss_pred             CCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEe--cCCCCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCce
Q psy14440        461 GPVRKLSFSPDRS-LLLSCSQDNTIRLWSLLLWRCLVVYK--GHGHPVWDIKFSP-HGYYFASAGHDRMARLWATDSYHP  536 (711)
Q Consensus       461 ~~V~~l~fspdg~-~L~s~s~Dg~V~iwdl~t~~~~~~~~--~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~~~~~~  536 (711)
                      |.|.++.|++... .|++|+.||.|.|||+...+.-..+.  .....|.+++|+. ..+.|++++.+|.+.|||++..++
T Consensus       117 G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p  196 (1049)
T KOG0307|consen  117 GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP  196 (1049)
T ss_pred             CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc
Confidence            9999999999665 99999999999999998654443332  2356799999987 457899999999999999999988


Q ss_pred             eEEeecCCC--CeeEEEEcCCC-CEEEEEEcCC---cEEEEECCCC-cEEEEeeCCCCCeEEEEEecCC-CEEEEEeCCC
Q psy14440        537 LRLFVGHYS--DVDCVQFHPNS-NYVATGSSDR---TIRLWDCVTG-SHVRLLTGHKAPVYALSFSVCG-RFLASAGGDG  608 (711)
Q Consensus       537 ~~~~~~h~~--~V~~v~~sp~~-~~latgs~Dg---~I~iwD~~~~-~~v~~~~~h~~~I~~la~spdg-~~Lasgs~Dg  608 (711)
                      +..+..+.+  .+..++|||+. ..|++++.|.   .|.+||+|.- ..++++++|...|.++.|++.+ ++|++++.|+
T Consensus       197 ii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~  276 (1049)
T KOG0307|consen  197 IIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDN  276 (1049)
T ss_pred             ccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCC
Confidence            888776655  47789999965 4577777653   5999999864 5678889999999999999866 8999999999


Q ss_pred             cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCCCcc
Q psy14440        609 NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGN-ILASSGQDCSVKLWDFAKLSDEV  664 (711)
Q Consensus       609 ~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~-~Lasgs~Dg~V~iWdl~~~~~~~  664 (711)
                      +|.+|+.++|+.+..+....+.+..+.|+|..- .+++++-||.|.||.+.......
T Consensus       277 ~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~~  333 (1049)
T KOG0307|consen  277 RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTDL  333 (1049)
T ss_pred             CeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCccc
Confidence            999999999999999998889999999999654 88889999999999998766443

>KOG4328|consensus

Probab=99.85  E-value=4.5e-20  Score=191.29  Aligned_cols=249  Identities=20%  Similarity=0.228  Sum_probs=196.5

Q ss_pred             EecCCCceEEEEECCCC--CEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        383 LLNARQQVTCAEISEDV--SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg--~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      ..-|.+.|+|++|+|..  +++|+|..-|.|-+||+.+..                           .....+..+..|+
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~---------------------------~d~d~v~~f~~hs  234 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE---------------------------KDKDGVYLFTPHS  234 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC---------------------------CccCceEEeccCC
Confidence            34477899999999965  589999999999999995221                           2233456778899


Q ss_pred             CCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEEec--CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce-
Q psy14440        461 GPVRKLSFSPD-RSLLLSCSQDNTIRLWSLLLWRCLVVYKG--HGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP-  536 (711)
Q Consensus       461 ~~V~~l~fspd-g~~L~s~s~Dg~V~iwdl~t~~~~~~~~~--h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~-  536 (711)
                      ++|.++.|+|. ...+++.|.||+|++-|+++......+..  ....+.++.|+.+...+++++.=|...+||.++... 
T Consensus       235 ~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~  314 (498)
T KOG4328|consen  235 GPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE  314 (498)
T ss_pred             ccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence            99999999994 45899999999999999987655444443  455677888888888888888888999999998755 


Q ss_pred             eEEeecCCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEE----EEeeCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q psy14440        537 LRLFVGHYSDVDCVQFHPN-SNYVATGSSDRTIRLWDCVTGSHV----RLLTGHKAPVYALSFSVCGRFLASAGGDGNVH  611 (711)
Q Consensus       537 ~~~~~~h~~~V~~v~~sp~-~~~latgs~Dg~I~iwD~~~~~~v----~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~  611 (711)
                      ...+..|...|..|+++|- ..+|||++.|++++|||++.-...    -....|...|.+..|||.|-.|++.+.|+.|+
T Consensus       315 ~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR  394 (498)
T KOG4328|consen  315 YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR  394 (498)
T ss_pred             chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence            5566678889999999994 567999999999999999864322    23346999999999999988899999999999


Q ss_pred             EEECC----CCeEEEEeeCCC----C--CEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        612 MWDLS----NGHLLTLLTGHT----D--VVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       612 iwDl~----sg~~i~~l~~h~----~--~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      |||..    .-.....+. |.    .  ......|.|+.+++++|-.-..|-|+|-+.
T Consensus       395 v~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~  451 (498)
T KOG4328|consen  395 VFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNG  451 (498)
T ss_pred             EeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCC
Confidence            99973    223333332 22    1  233457999999999999988999998654

>KOG0321|consensus

Probab=99.85  E-value=5.3e-20  Score=197.22  Aligned_cols=239  Identities=21%  Similarity=0.312  Sum_probs=181.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEE
Q psy14440        399 VSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSC  478 (711)
Q Consensus       399 g~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~  478 (711)
                      ..+||.+.+||.|.++|.......                         ......+....|.+.|..+.|-|....|+++
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr-------------------------~ee~~lk~~~aH~nAifDl~wapge~~lVsa  118 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFR-------------------------LEERQLKKPLAHKNAIFDLKWAPGESLLVSA  118 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcc-------------------------hhhhhhcccccccceeEeeccCCCceeEEEc
Confidence            358999999999999998543321                         0112235566899999999999977789999


Q ss_pred             eCCCeEEEEECCCCeEEEE--EecCCCCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCc--------------------
Q psy14440        479 SQDNTIRLWSLLLWRCLVV--YKGHGHPVWDIKFSPH-GYYFASAGHDRMARLWATDSYH--------------------  535 (711)
Q Consensus       479 s~Dg~V~iwdl~t~~~~~~--~~~h~~~V~~v~~sp~-g~~l~sgs~Dg~i~lwd~~~~~--------------------  535 (711)
                      +.|.++++||+.+.+++..  +.||.+.|.+++|.++ ...|++|+.||.|.|||++...                    
T Consensus       119 sGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt  198 (720)
T KOG0321|consen  119 SGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT  198 (720)
T ss_pred             cCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence            9999999999999998877  8999999999999995 4689999999999999987432                    


Q ss_pred             e-------eEEeecCCCCeeE---EEEcCCCCEEEEEEc-CCcEEEEECCCCcEEEE--------eeCC---CCCeEEEE
Q psy14440        536 P-------LRLFVGHYSDVDC---VQFHPNSNYVATGSS-DRTIRLWDCVTGSHVRL--------LTGH---KAPVYALS  593 (711)
Q Consensus       536 ~-------~~~~~~h~~~V~~---v~~sp~~~~latgs~-Dg~I~iwD~~~~~~v~~--------~~~h---~~~I~~la  593 (711)
                      +       ++....+...|..   +.+..|...||+++. |+.|+|||+++..+...        +..|   ...++++.
T Consensus       199 pskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~  278 (720)
T KOG0321|consen  199 PSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI  278 (720)
T ss_pred             CCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE
Confidence            0       1111123334444   445568889999887 99999999987654322        2223   34678888


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCCe--EEEEeeCCCCC--EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        594 FSVCGRFLASAGGDGNVHMWDLSNGH--LLTLLTGHTDV--VRALCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       594 ~spdg~~Lasgs~Dg~I~iwDl~sg~--~i~~l~~h~~~--V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      ....|.+|++.+.|++|++||+.+-.  .+..+.++...  -..-..++|+.+|++|+.|+...+|.+.+...
T Consensus       279 lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~  351 (720)
T KOG0321|consen  279 LDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA  351 (720)
T ss_pred             ecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence            88889999999999999999997643  45555555321  11224688999999999999999999987554

>KOG1445|consensus

Probab=99.84  E-value=3e-20  Score=197.97  Aligned_cols=118  Identities=27%  Similarity=0.502  Sum_probs=103.2

Q ss_pred             eeEEEEcC-CCCEEEEEEcCCcEEEEECCCC-------cEEEEeeCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCC
Q psy14440        547 VDCVQFHP-NSNYVATGSSDRTIRLWDCVTG-------SHVRLLTGHKAPVYALSFSVC-GRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       547 V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~-------~~v~~~~~h~~~I~~la~spd-g~~Lasgs~Dg~I~iwDl~s  617 (711)
                      |+.+.|.| |...||+++.||.|++|.+..+       ..-..+++|...|+++.|+|- ...|++++.|-+|++||+.+
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            44566777 5678999999999999998654       345678899999999999994 56899999999999999999


Q ss_pred             CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q psy14440        618 GHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEV  664 (711)
Q Consensus       618 g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  664 (711)
                      ++....+.+|.+.|.+++||+||+.+|+.+.||+|+||+-++.....
T Consensus       710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv  756 (1012)
T KOG1445|consen  710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV  756 (1012)
T ss_pred             hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc
Confidence            99999999999999999999999999999999999999988755443

>KOG1034|consensus

Probab=99.84  E-value=1.6e-19  Score=180.40  Aligned_cols=273  Identities=25%  Similarity=0.415  Sum_probs=207.5

Q ss_pred             EecCCCceEEEEECC-----CCCEEEEEeCCCeEEEEeCCCCc----eee------------ec----cCcccccccccc
Q psy14440        383 LLNARQQVTCAEISE-----DVSILAVGFSESYIKLWSLVPQK----LKA------------MK----SSDQLQDIEMEC  437 (711)
Q Consensus       383 l~~h~~~V~~l~fs~-----dg~~LatG~~dg~I~vWdl~~~~----~~~------------~~----~~~~~~~l~~~~  437 (711)
                      ..+|+..|..++|+.     +-..+|+.+. ..|.+|.....-    +..            ..    .......+++++
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            356778888888883     3346666554 346666653321    000            11    111234567777


Q ss_pred             CCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEE---ecCCCCEEEEEEcCC
Q psy14440        438 DDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLLLWRCLVVY---KGHGHPVWDIKFSPH  513 (711)
Q Consensus       438 ~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg-~~L~s~s~Dg~V~iwdl~t~~~~~~~---~~h~~~V~~v~~sp~  513 (711)
                      .-|.|++.|..+++....+.+|.+.|..+.|.|+. +++++||.|.+||+|++++..|+..+   .||...|.++.|+.+
T Consensus       113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~  192 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD  192 (385)
T ss_pred             ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence            89999999999999999999999999999999965 68999999999999999999999987   469999999999999


Q ss_pred             CCEEEEEECCCeEEEEECCCCc-------------------------eeE---EeecCCCCeeEEEEcCCCCEEEEEEcC
Q psy14440        514 GYYFASAGHDRMARLWATDSYH-------------------------PLR---LFVGHYSDVDCVQFHPNSNYVATGSSD  565 (711)
Q Consensus       514 g~~l~sgs~Dg~i~lwd~~~~~-------------------------~~~---~~~~h~~~V~~v~~sp~~~~latgs~D  565 (711)
                      |.+|+++|.|.++++|++...+                         ..-   +-.-|...|.|+.|-  |+++++-|.+
T Consensus       193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksce  270 (385)
T KOG1034|consen  193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCE  270 (385)
T ss_pred             CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccC
Confidence            9999999999999999987311                         000   112477888899886  6899999999


Q ss_pred             CcEEEEEC-CCCc-------------EEEEeeCCCCCeEEEE--EecCCCEEEEEeCCCcEEEEECCCCeEE--EEeeC-
Q psy14440        566 RTIRLWDC-VTGS-------------HVRLLTGHKAPVYALS--FSVCGRFLASAGGDGNVHMWDLSNGHLL--TLLTG-  626 (711)
Q Consensus       566 g~I~iwD~-~~~~-------------~v~~~~~h~~~I~~la--~spdg~~Lasgs~Dg~I~iwDl~sg~~i--~~l~~-  626 (711)
                      +.|..|-. +-++             .+..+.-....|.-+.  |.+.+++||.|...|.|++||++.....  .++.. 
T Consensus       271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s  350 (385)
T KOG1034|consen  271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS  350 (385)
T ss_pred             ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence            99999976 2111             2333444455666654  4567899999999999999999876542  22222 


Q ss_pred             -CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        627 -HTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       627 -h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                       ....|...+||.||.+|+..+.|++|.-||.-
T Consensus       351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence             23579999999999999999999999999854

>KOG2055|consensus

Probab=99.84  E-value=1.5e-19  Score=187.63  Aligned_cols=232  Identities=19%  Similarity=0.315  Sum_probs=196.5

Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEEecCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCce
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL--WRCLVVYKGHGHPVWDIKFSPHGY-YFASAGHDRMARLWATDSYHP  536 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t--~~~~~~~~~h~~~V~~v~~sp~g~-~l~sgs~Dg~i~lwd~~~~~~  536 (711)
                      .+.|+++.|+|....|++|+.||+++||.++.  ...+..+.-...+|.+.+|.|+|+ .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            46899999999999999999999999998863  345556666688999999999999 899999999999999988764


Q ss_pred             eE--EeecCC-CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy14440        537 LR--LFVGHY-SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW  613 (711)
Q Consensus       537 ~~--~~~~h~-~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iw  613 (711)
                      ..  ...++. ..+.....++++++|++.+..|.|.+....+++.+..++ -.+.|..++|+.||+.|++++.+|.|.+|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~  371 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW  371 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence            33  233333 357788899999999999999999999999999988887 56789999999999999999999999999


Q ss_pred             ECCCCeEEEEeeCCCC-CEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccC
Q psy14440        614 DLSNGHLLTLLTGHTD-VVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTK  692 (711)
Q Consensus       614 Dl~sg~~i~~l~~h~~-~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~  692 (711)
                      |++...++.++....+ .-+++|.|.+|.+||+|+..|.|.|||.++.-.                 ......+.++...
T Consensus       372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~-----------------s~~PkPik~~dNL  434 (514)
T KOG2055|consen  372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA-----------------STNPKPIKTVDNL  434 (514)
T ss_pred             ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhc-----------------cCCCCchhhhhhh
Confidence            9999999988875432 346788889999999999999999999775322                 1345567778888


Q ss_pred             CcceEEEEEccCCeeee
Q psy14440        693 ASPLLHLIFSRRNILLR  709 (711)
Q Consensus       693 ~~pV~~v~Fs~~n~lla  709 (711)
                      .+.|.+++|+++.++||
T Consensus       435 tt~Itsl~Fn~d~qiLA  451 (514)
T KOG2055|consen  435 TTAITSLQFNHDAQILA  451 (514)
T ss_pred             heeeeeeeeCcchhhhh
Confidence            89999999999999998

>KOG2048|consensus

Probab=99.84  E-value=2.6e-18  Score=185.83  Aligned_cols=243  Identities=19%  Similarity=0.273  Sum_probs=195.9

Q ss_pred             EEecCC-CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        382 TLLNAR-QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       382 tl~~h~-~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      .++++. ..|-+++|++.+ .|.+.+.+|.|.-||+.                               +++....+....
T Consensus        63 vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~-------------------------------~lk~~~~~d~~g  110 (691)
T KOG2048|consen   63 VIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLH-------------------------------TLKQKYNIDSNG  110 (691)
T ss_pred             EEecCCCCceeeEEEccCC-eEEeecCCceEEEEecc-------------------------------cCceeEEecCCC
Confidence            455554 569999999555 45566667889999884                               444555666678


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE--EEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeE
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV--VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLR  538 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~--~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~  538 (711)
                      +.|++++.+|.+..++.|+.||.+..++...+....  .+....+.|.+++|++++..+++|+.||.|++||...+..+.
T Consensus       111 g~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~  190 (691)
T KOG2048|consen  111 GAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH  190 (691)
T ss_pred             cceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence            899999999999999999999988888887766543  233346899999999999999999999999999999887766


Q ss_pred             Eeec--------CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy14440        539 LFVG--------HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNV  610 (711)
Q Consensus       539 ~~~~--------h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I  610 (711)
                      ....        ...-|.++.|- ....|++|.+.|+|.+||...|..+..+..|.+.|.|++.++++.+++++|.|+.|
T Consensus       191 ~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~i  269 (691)
T KOG2048|consen  191 IITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKI  269 (691)
T ss_pred             EeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCce
Confidence            3321        12225555555 45689999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCeE----EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        611 HMWDLSNGHL----LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       611 ~iwDl~sg~~----i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ..|...+++.    ......|...|.+++...+  .|++||.|+++.+-....
T Consensus       270 i~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  270 IQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             EEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence            9998766533    2334578888999998865  999999999998877665

>KOG1273|consensus

Probab=99.83  E-value=2.4e-19  Score=178.01  Aligned_cols=199  Identities=16%  Similarity=0.259  Sum_probs=164.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeec
Q psy14440        463 VRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG  542 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~  542 (711)
                      ..|+.|++.|.+|++|+.||.|.|||+.|...-..+.+|..+|.+++||++|+.++|+|.|..|.+||+..+.++..+. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            6899999999999999999999999999999889999999999999999999999999999999999999999888775 


Q ss_pred             CCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEeeCCC----CCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy14440        543 HYSDVDCVQFHPN-SNYVATGSSDRTIRLWDCVTGSHVRLLTGHK----APVYALSFSVCGRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       543 h~~~V~~v~~sp~-~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~----~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s  617 (711)
                      ..++|..+.|||. .+..++.-.+..-.+-++..++....-....    ..-.+..|.+.|++|++|...|.+.++|..+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence            5789999999994 3333333334445555555433221111111    1222346889999999999999999999999


Q ss_pred             CeEEEEeeCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        618 GHLLTLLTGHT-DVVRALCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       618 g~~i~~l~~h~-~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      -+++..++.-. ..|.++.|+..|++|+.-+.|..||+|+++....
T Consensus       185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~  230 (405)
T KOG1273|consen  185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDD  230 (405)
T ss_pred             heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcc
Confidence            99999988766 7899999999999999999999999999986443

>KOG1009|consensus

Probab=99.83  E-value=8.7e-19  Score=179.58  Aligned_cols=252  Identities=24%  Similarity=0.375  Sum_probs=191.2

Q ss_pred             CCCceEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEE
Q psy14440        386 ARQQVTCAEISEDVS-ILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVR  464 (711)
Q Consensus       386 h~~~V~~l~fs~dg~-~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~  464 (711)
                      ....|.++.|..++. .||+|+.|..|+||.+....-.              ..+        .+-+....|..|...|+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~--------------~~~--------~~V~y~s~Ls~H~~aVN   69 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG--------------GGD--------MKVEYLSSLSRHTRAVN   69 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCC--------------CCc--------eeEEEeecccCCcceeE
Confidence            446899999998876 9999999999999998532210              000        12234567889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECC--------C--------CeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEE
Q psy14440        465 KLSFSPDRSLLLSCSQDNTIRLWSLL--------L--------WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARL  528 (711)
Q Consensus       465 ~l~fspdg~~L~s~s~Dg~V~iwdl~--------t--------~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~l  528 (711)
                      ++.|+++|..|+||+.+|.|.+|-..        +        |.....+.+|...|.+++|++++.++++++-|.++++
T Consensus        70 ~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l  149 (434)
T KOG1009|consen   70 VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRL  149 (434)
T ss_pred             EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEE
Confidence            99999999999999999999999764        3        5667788899999999999999999999999999999


Q ss_pred             EECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee--------C-----------CC---
Q psy14440        529 WATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT--------G-----------HK---  586 (711)
Q Consensus       529 wd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~--------~-----------h~---  586 (711)
                      ||+..|..+..+.+|...|..++|.|-+.|+++-+.|...+.+++.....+....        +           |.   
T Consensus       150 ~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTl  229 (434)
T KOG1009|consen  150 WDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETL  229 (434)
T ss_pred             EEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCch
Confidence            9999999999999999999999999999999999988877777654332211100        0           11   


Q ss_pred             -CCeEEEEEecCCCEEEEEe------------------------------------------------------------
Q psy14440        587 -APVYALSFSVCGRFLASAG------------------------------------------------------------  605 (711)
Q Consensus       587 -~~I~~la~spdg~~Lasgs------------------------------------------------------------  605 (711)
                       .-...++|+|||.+|++.+                                                            
T Consensus       230 ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~l  309 (434)
T KOG1009|consen  230 KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVL  309 (434)
T ss_pred             hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccccccc
Confidence             1122345555554433221                                                            


Q ss_pred             ---------CCCcEEEEECCCCeEEEEe-eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        606 ---------GDGNVHMWDLSNGHLLTLL-TGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       606 ---------~Dg~I~iwDl~sg~~i~~l-~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                               ..+.|+|||..+-..+... .-|-..|+.++|+.||.+|+..|.||-+.+--+..
T Consensus       310 pyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~  373 (434)
T KOG1009|consen  310 PYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP  373 (434)
T ss_pred             ccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence                     1234566665555544443 24667899999999999999999999877766654

>KOG0307|consensus

Probab=99.82  E-value=5.7e-20  Score=209.12  Aligned_cols=224  Identities=21%  Similarity=0.318  Sum_probs=178.4

Q ss_pred             cCCEEEEEEcCCCCE----EEEEeCCCeEEEEECCC------CeEEEEEecCCCCEEEEEEcCCC-CEEEEEECCCeEEE
Q psy14440        460 EGPVRKLSFSPDRSL----LLSCSQDNTIRLWSLLL------WRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARL  528 (711)
Q Consensus       460 ~~~V~~l~fspdg~~----L~s~s~Dg~V~iwdl~t------~~~~~~~~~h~~~V~~v~~sp~g-~~l~sgs~Dg~i~l  528 (711)
                      ....+.++|.+.|..    |+.|..||+|.+||...      ...+..+..|.+.|..+.|++.. +.+|+|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            456789999987765    88889999999999854      23456677899999999999954 59999999999999


Q ss_pred             EECCCCceeEEee--cCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCC--CCeEEEEEecCCC-EEE
Q psy14440        529 WATDSYHPLRLFV--GHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHK--APVYALSFSVCGR-FLA  602 (711)
Q Consensus       529 wd~~~~~~~~~~~--~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~--~~I~~la~spdg~-~La  602 (711)
                      ||+.+.+.-....  ...+.|.|++|+. ..+.|++++.+|++.|||++..+.+-.+..|.  ..+..++|+|++. .|+
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~  223 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL  223 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence            9998754333331  2457899999987 45678899999999999999998877776554  4578899999863 455


Q ss_pred             EEeCCC---cEEEEECCCC-eEEEEeeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCCCccCcccccccccccc
Q psy14440        603 SAGGDG---NVHMWDLSNG-HLLTLLTGHTDVVRALCFSRDG-NILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADI  677 (711)
Q Consensus       603 sgs~Dg---~I~iwDl~sg-~~i~~l~~h~~~V~sl~fspdg-~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~  677 (711)
                      ++++|.   .|.+||++.. ..++++.+|...|.+++|++.+ .+|+|++.|+.|.+|+.++                  
T Consensus       224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t------------------  285 (1049)
T KOG0307|consen  224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT------------------  285 (1049)
T ss_pred             eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC------------------
Confidence            555543   7999999864 4678889999999999999965 8999999999999999875                  


Q ss_pred             ccccccceeeecccCCcceEEEEEccCCe
Q psy14440        678 KNSSLAYLVRSYKTKASPLLHLIFSRRNI  706 (711)
Q Consensus       678 ~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~  706 (711)
                           ...|..+.+...=++.|+|++++-
T Consensus       286 -----gEvl~~~p~~~nW~fdv~w~pr~P  309 (1049)
T KOG0307|consen  286 -----GEVLGELPAQGNWCFDVQWCPRNP  309 (1049)
T ss_pred             -----ceEeeecCCCCcceeeeeecCCCc
Confidence                 334555666666777777877765

>KOG1007|consensus

Probab=99.82  E-value=1.1e-18  Score=171.54  Aligned_cols=254  Identities=23%  Similarity=0.361  Sum_probs=190.1

Q ss_pred             EEEeecccCCEEEEEEcCCC-CEEEEEeCC-------CeEEEEECCC---------CeEEEEEe-cCCCCEEEEEEcCCC
Q psy14440        453 TRTLVGHEGPVRKLSFSPDR-SLLLSCSQD-------NTIRLWSLLL---------WRCLVVYK-GHGHPVWDIKFSPHG  514 (711)
Q Consensus       453 ~~~l~~h~~~V~~l~fspdg-~~L~s~s~D-------g~V~iwdl~t---------~~~~~~~~-~h~~~V~~v~~sp~g  514 (711)
                      .+.|..|.|.|..++-+|-. +.|+++..+       ..+.||.+..         .+++..+. .+-+.|.|+.|.|++
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns  135 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS  135 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence            45677889999999999944 556665442       2378998742         44455554 345689999999999


Q ss_pred             CEEEEEECCCeEEEEECCCCce-eEEee-----cCCCCeeEEEEcC--CCCEEEEEEcCCcEEEEECCCCcEEEEee-CC
Q psy14440        515 YYFASAGHDRMARLWATDSYHP-LRLFV-----GHYSDVDCVQFHP--NSNYVATGSSDRTIRLWDCVTGSHVRLLT-GH  585 (711)
Q Consensus       515 ~~l~sgs~Dg~i~lwd~~~~~~-~~~~~-----~h~~~V~~v~~sp--~~~~latgs~Dg~I~iwD~~~~~~v~~~~-~h  585 (711)
                      ..+++-. |..|.+|+++.... +..+.     ++....++-+|+|  +|+.+++.+ |++++.||+++.++...+. .|
T Consensus       136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAH  213 (370)
T KOG1007|consen  136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAH  213 (370)
T ss_pred             CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhh
Confidence            8888876 88999999987755 22222     3556678889988  888888876 8999999999988776664 68


Q ss_pred             CCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCC-eEEEEeeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        586 KAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNG-HLLTLLTGHTDVVRALCFSRD-GNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       586 ~~~I~~la~spdg~-~Lasgs~Dg~I~iwDl~sg-~~i~~l~~h~~~V~sl~fspd-g~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      ...|..+.|+|+-+ +|++|++||.|+|||.++- ..+.++.+|...|+++.|++. ..+|++||.|..|.+|.....+.
T Consensus       214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS  293 (370)
T KOG1007|consen  214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS  293 (370)
T ss_pred             cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence            88899999999865 6889999999999999875 478999999999999999994 67899999999999999887664


Q ss_pred             ccCccccc-cccccc--c--c-cccccceeeecccCCcceEEEEEccCCeee
Q psy14440        663 EVGTEEVN-LSHSAD--I--K-NSSLAYLVRSYKTKASPLLHLIFSRRNILL  708 (711)
Q Consensus       663 ~~~~~~~~-~~~~~~--~--~-~~~~~~~l~~~~t~~~pV~~v~Fs~~n~ll  708 (711)
                      +...+.-. .+...+  .  + +.-....+.+|..|...||+++||...-.+
T Consensus       294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi  345 (370)
T KOG1007|consen  294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI  345 (370)
T ss_pred             ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence            43221100 000000  0  0 012345677899999999999999865543

>KOG4378|consensus

Probab=99.82  E-value=3.7e-19  Score=185.45  Aligned_cols=217  Identities=18%  Similarity=0.343  Sum_probs=183.2

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCC
Q psy14440        392 CAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPD  471 (711)
Q Consensus       392 ~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspd  471 (711)
                      |++......++++|+..++|+|||+..                               ....+.+.+|...|+++.++-.
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-------------------------------kl~hr~lkdh~stvt~v~YN~~  132 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRA-------------------------------KLIHRFLKDHQSTVTYVDYNNT  132 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHH-------------------------------HHHhhhccCCcceeEEEEecCC
Confidence            444444448999999999999999852                               2335678899999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeEEEEEecC-CCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCceeEEe-ecCCCCee
Q psy14440        472 RSLLLSCSQDNTIRLWSLLLWRCLVVYKGH-GHPVWDIKFSPHGY-YFASAGHDRMARLWATDSYHPLRLF-VGHYSDVD  548 (711)
Q Consensus       472 g~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h-~~~V~~v~~sp~g~-~l~sgs~Dg~i~lwd~~~~~~~~~~-~~h~~~V~  548 (711)
                      ..+|++++..|.|.|..+.++.....+... +..|.-+.|++..+ .+.+++.+|.|.+||+....++..+ ..|..+..
T Consensus       133 DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~  212 (673)
T KOG4378|consen  133 DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCR  212 (673)
T ss_pred             cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcC
Confidence            999999999999999999998887777754 44566889999654 6778899999999999988777654 46999999


Q ss_pred             EEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eEEEEeeC
Q psy14440        549 CVQFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNG-HLLTLLTG  626 (711)
Q Consensus       549 ~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg-~~i~~l~~  626 (711)
                      .|||+| +...|++.+.|+.|.+||++..+....+. ...+.++++|+++|.+|++|...|.|..||++.. ..+..+..
T Consensus       213 gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa  291 (673)
T KOG4378|consen  213 GICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA  291 (673)
T ss_pred             cceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence            999999 66778899999999999999777666655 4678899999999999999999999999999864 57899999


Q ss_pred             CCCCEEEEEEeCCC
Q psy14440        627 HTDVVRALCFSRDG  640 (711)
Q Consensus       627 h~~~V~sl~fspdg  640 (711)
                      |...|++++|-+.-
T Consensus       292 h~~sVt~vafq~s~  305 (673)
T KOG4378|consen  292 HDASVTRVAFQPSP  305 (673)
T ss_pred             cccceeEEEeeecc
Confidence            99999999998754

>KOG2919|consensus

Probab=99.81  E-value=2.6e-18  Score=171.22  Aligned_cols=240  Identities=23%  Similarity=0.351  Sum_probs=184.9

Q ss_pred             eeeccCccccccccccCCcEEEEEecCC-----C--e-----eEEEee-cccCCEEEEEEc-------CCCCEEEEEeCC
Q psy14440        422 KAMKSSDQLQDIEMECDDILVRIMDERN-----A--E-----TTRTLV-GHEGPVRKLSFS-------PDRSLLLSCSQD  481 (711)
Q Consensus       422 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~--~-----~~~~l~-~h~~~V~~l~fs-------pdg~~L~s~s~D  481 (711)
                      +..++++++..|.+.+.+..+++|+...     +  .     ....++ .....|+..+|-       |+..++++.+.|
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~  132 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD  132 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence            3445666777777778888888887421     1  0     011111 224568888885       577899999999


Q ss_pred             CeEEEEECCCCeEEEEEec--CC---CCEEEEEEcCCCCEEEEEECCCeEEEEEC-CCCcee--EEee-----cCCCCee
Q psy14440        482 NTIRLWSLLLWRCLVVYKG--HG---HPVWDIKFSPHGYYFASAGHDRMARLWAT-DSYHPL--RLFV-----GHYSDVD  548 (711)
Q Consensus       482 g~V~iwdl~t~~~~~~~~~--h~---~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~-~~~~~~--~~~~-----~h~~~V~  548 (711)
                      .-|.+||..+++....|++  |.   ....+++|+|||.+|++| ..++|+++|+ +.+...  ....     +..+-|.
T Consensus       133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis  211 (406)
T KOG2919|consen  133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS  211 (406)
T ss_pred             CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence            9999999999999888875  32   245689999999998876 4689999999 444322  2111     3467789


Q ss_pred             EEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCC-CeEEEEee
Q psy14440        549 CVQFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG-DGNVHMWDLSN-GHLLTLLT  625 (711)
Q Consensus       549 ~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~-Dg~I~iwDl~s-g~~i~~l~  625 (711)
                      |++|+| +...+++|+...++-||.-..+..+..+.+|.+.|+.++|.++|+.|++|.. |..|..||++. +..+..+.
T Consensus       212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~  291 (406)
T KOG2919|consen  212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE  291 (406)
T ss_pred             eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence            999999 5669999999999999998889999999999999999999999999999974 66899999986 45677777


Q ss_pred             CCCC-CEEEEE--EeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        626 GHTD-VVRALC--FSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       626 ~h~~-~V~sl~--fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      .|.+ .-..|-  ..++|++|++|+.||.|++||++...+
T Consensus       292 rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  292 RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence            7765 333444  467899999999999999999988554

>KOG0270|consensus

Probab=99.80  E-value=1.2e-18  Score=180.28  Aligned_cols=191  Identities=24%  Similarity=0.378  Sum_probs=157.9

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeE---E------------------EEEecCCCCEEEEEEcCC-CCEEEEEECCCeEEE
Q psy14440        471 DRSLLLSCSQDNTIRLWSLLLWRC---L------------------VVYKGHGHPVWDIKFSPH-GYYFASAGHDRMARL  528 (711)
Q Consensus       471 dg~~L~s~s~Dg~V~iwdl~t~~~---~------------------~~~~~h~~~V~~v~~sp~-g~~l~sgs~Dg~i~l  528 (711)
                      -|+++|.|+.|..|.|||+.-...   .                  ....+|+..|.++.|+.. .+.||+||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            367999999999999999842111   0                  112368888889999874 468999999999999


Q ss_pred             EECCCCceeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCC-CEEEEEeC
Q psy14440        529 WATDSYHPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCG-RFLASAGG  606 (711)
Q Consensus       529 wd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg-~~Lasgs~  606 (711)
                      ||++++++..++..|...|.++.||| ...+|++||.|++|++.|++.-.+....-.-.+.|-.++|.+.. ..++++..
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            99999999999999999999999999 57789999999999999999533222222245789999999865 45667789


Q ss_pred             CCcEEEEECCC-CeEEEEeeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCC
Q psy14440        607 DGNVHMWDLSN-GHLLTLLTGHTDVVRALCFSRD-GNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       607 Dg~I~iwDl~s-g~~i~~l~~h~~~V~sl~fspd-g~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      ||+|+-+|+++ |+++.++++|.+.|.+|+++.. -.+|+++|.|+.|++|++..-.
T Consensus       351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence            99999999987 4899999999999999999874 4589999999999999997643

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=1.4e-16  Score=171.91  Aligned_cols=234  Identities=37%  Similarity=0.635  Sum_probs=197.2

Q ss_pred             CccccccccccCCcEEEEEecCCCe-eEEEeecccC-CEEEEEE-cCCCC-EEEEEeC-CCeEEEEECCC-CeEEEEEec
Q psy14440        427 SDQLQDIEMECDDILVRIMDERNAE-TTRTLVGHEG-PVRKLSF-SPDRS-LLLSCSQ-DNTIRLWSLLL-WRCLVVYKG  500 (711)
Q Consensus       427 ~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~l~~h~~-~V~~l~f-spdg~-~L~s~s~-Dg~V~iwdl~t-~~~~~~~~~  500 (711)
                      ......+...+.++.+.+|+..... ....+.++.. .+..+.+ ++++. .++.++. |+.+.+|+... ......+..
T Consensus        74 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  153 (466)
T COG2319          74 SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG  153 (466)
T ss_pred             CCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEec
Confidence            3344445555678999999988876 6777777544 7787777 78887 5555455 99999999998 888889999


Q ss_pred             CCCCEEEEEEcCCCCEEEEEEC-CCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCcE
Q psy14440        501 HGHPVWDIKFSPHGYYFASAGH-DRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSN-YVATGSSDRTIRLWDCVTGSH  578 (711)
Q Consensus       501 h~~~V~~v~~sp~g~~l~sgs~-Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-~latgs~Dg~I~iwD~~~~~~  578 (711)
                      |...|.+++|++++.++++++. |+.+++|+...+..+..+.+|...|.+++|++++. ++++++.|++|++||...+..
T Consensus       154 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~  233 (466)
T COG2319         154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL  233 (466)
T ss_pred             CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE
Confidence            9999999999999998888886 99999999999889999999999999999999998 555558999999999998888


Q ss_pred             EE-EeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE-EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        579 VR-LLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL-LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       579 v~-~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~-i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      +. .+.+|.... ...|++++.++++++.|+.+++||+..... +..+.+|...|.++.|++++..+++++.|+.+++||
T Consensus       234 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~  312 (466)
T COG2319         234 LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD  312 (466)
T ss_pred             EeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence            88 688888875 448999999999999999999999987664 555578889999999999889998899999999998


Q ss_pred             CCCCC
Q psy14440        657 FAKLS  661 (711)
Q Consensus       657 l~~~~  661 (711)
                      +....
T Consensus       313 ~~~~~  317 (466)
T COG2319         313 LETGK  317 (466)
T ss_pred             cCCCc
Confidence            87643

>KOG0644|consensus

Probab=99.80  E-value=6.7e-20  Score=200.92  Aligned_cols=245  Identities=26%  Similarity=0.421  Sum_probs=197.4

Q ss_pred             EecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCC
Q psy14440        383 LLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGP  462 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~  462 (711)
                      +.+|.+.|.|+.|...|.++++|+.|..|+||+++                               +..+...+.||++.
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e-------------------------------t~~~lAs~rGhs~d  234 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME-------------------------------TARCLASCRGHSGD  234 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeecc-------------------------------chhhhccCCCCccc
Confidence            57899999999999999999999999999999974                               34456678899999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC--------
Q psy14440        463 VRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY--------  534 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~--------  534 (711)
                      |+.++.+.++.+++++|.|..|++|.+.++..+..+.+|.+.|++++|+|-.    +.+.||++++||.+-.        
T Consensus       235 itdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp  310 (1113)
T KOG0644|consen  235 ITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRP  310 (1113)
T ss_pred             cchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCC
Confidence            9999999999999999999999999999999999999999999999999964    7789999999998710        


Q ss_pred             ------ceeEEe--e--------c------CCCCeeEEEEcCCCCEEEEEE-----------cCCcEEEEECCCCcEEEE
Q psy14440        535 ------HPLRLF--V--------G------HYSDVDCVQFHPNSNYVATGS-----------SDRTIRLWDCVTGSHVRL  581 (711)
Q Consensus       535 ------~~~~~~--~--------~------h~~~V~~v~~sp~~~~latgs-----------~Dg~I~iwD~~~~~~v~~  581 (711)
                            ..+..+  .        +      ..-.+.+++|+.+.-.+++++           .+-.+.+|++.+|...+.
T Consensus       311 ~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~  390 (1113)
T KOG0644|consen  311 LKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHN  390 (1113)
T ss_pred             CCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhh
Confidence                  000000  0        0      011233445554444444444           344578899999999999


Q ss_pred             eeCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        582 LTGHKAPVYALSFSVCG-RFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       582 ~~~h~~~I~~la~spdg-~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      ..+|...++.+.++|-. +...+++.||+..|||+..|..++.+....+.+..-.||+||+.++....-|.+.|......
T Consensus       391 l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs  470 (1113)
T KOG0644|consen  391 LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS  470 (1113)
T ss_pred             hcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence            99999999999999954 45568899999999999999887776543456677899999999998888899999887654


Q ss_pred             CC
Q psy14440        661 SD  662 (711)
Q Consensus       661 ~~  662 (711)
                      ..
T Consensus       471 ~s  472 (1113)
T KOG0644|consen  471 KS  472 (1113)
T ss_pred             cc
Confidence            43

>KOG4328|consensus

Probab=99.80  E-value=1.8e-18  Score=179.56  Aligned_cols=212  Identities=20%  Similarity=0.272  Sum_probs=170.5

Q ss_pred             cCCCeeEEEeecccCCEEEEEEcCCC--CEEEEEeCCCeEEEEECCC----CeEEEEEecCCCCEEEEEEcC-CCCEEEE
Q psy14440        447 ERNAETTRTLVGHEGPVRKLSFSPDR--SLLLSCSQDNTIRLWSLLL----WRCLVVYKGHGHPVWDIKFSP-HGYYFAS  519 (711)
Q Consensus       447 ~~~~~~~~~l~~h~~~V~~l~fspdg--~~L~s~s~Dg~V~iwdl~t----~~~~~~~~~h~~~V~~v~~sp-~g~~l~s  519 (711)
                      ..........+-|.++|++++|+|..  +.+++|+.-|+|-+||+.+    ..-+..+..|..+|.++.|+| +...|++
T Consensus       173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s  252 (498)
T KOG4328|consen  173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS  252 (498)
T ss_pred             cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence            33444455666789999999999954  4788899999999999952    334667788999999999999 4468999


Q ss_pred             EECCCeEEEEECCCCceeEEee--cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEeeCCCCCeEEEEEec
Q psy14440        520 AGHDRMARLWATDSYHPLRLFV--GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH-VRLLTGHKAPVYALSFSV  596 (711)
Q Consensus       520 gs~Dg~i~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~-v~~~~~h~~~I~~la~sp  596 (711)
                      .|.||+|++-|+++...-..+.  .....+..+.|+.+...+++|..=|...+||++++.. ...+.-|...|++++++|
T Consensus       253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP  332 (498)
T KOG4328|consen  253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP  332 (498)
T ss_pred             eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence            9999999999998764332222  2445577788888777788887777999999998765 566677888999999999


Q ss_pred             C-CCEEEEEeCCCcEEEEECCCCe----EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        597 C-GRFLASAGGDGNVHMWDLSNGH----LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       597 d-g~~Lasgs~Dg~I~iwDl~sg~----~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      . ..+|||||.|++++|||++.-.    .+-....|...|.+..|||.|..|++.+.|+.|||||..
T Consensus       333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            6 4578999999999999998632    233344699999999999988889999999999999985

>KOG0322|consensus

Probab=99.80  E-value=8.1e-19  Score=170.61  Aligned_cols=248  Identities=18%  Similarity=0.253  Sum_probs=176.5

Q ss_pred             ceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        377 SIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       377 s~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      .-.+|.+..|.+.|+|+.|..+++ |.+|..-|.|++|++.+..-..                               .+
T Consensus         4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~-------------------------------~~   51 (323)
T KOG0322|consen    4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP-------------------------------LI   51 (323)
T ss_pred             CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccch-------------------------------hh
Confidence            344678889999999999999887 7899999999999997654221                               11


Q ss_pred             e-cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------------------------------------------
Q psy14440        457 V-GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL--------------------------------------------  491 (711)
Q Consensus       457 ~-~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t--------------------------------------------  491 (711)
                      + .|...|+.+.--|+ ..|.+-+.|+.+.+|++.-                                            
T Consensus        52 r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~  130 (323)
T KOG0322|consen   52 RLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHK  130 (323)
T ss_pred             hhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhh
Confidence            1 12223333333333 2333334444444443321                                            


Q ss_pred             -----CeEEEEE----ecCCCCEEEEEEcC-CCC--EEEEEECCCeEEEEECCCCc----------eeEEeecCCCCeeE
Q psy14440        492 -----WRCLVVY----KGHGHPVWDIKFSP-HGY--YFASAGHDRMARLWATDSYH----------PLRLFVGHYSDVDC  549 (711)
Q Consensus       492 -----~~~~~~~----~~h~~~V~~v~~sp-~g~--~l~sgs~Dg~i~lwd~~~~~----------~~~~~~~h~~~V~~  549 (711)
                           ...+...    .+..+.+.|..|.- .+.  .+++|-++|.+.+||+.++.          ...-...|..+|.+
T Consensus       131 ~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvls  210 (323)
T KOG0322|consen  131 QDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLS  210 (323)
T ss_pred             hccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCccee
Confidence                 1111111    12234566665433 232  55677799999999999873          33344569999999


Q ss_pred             EEEcCCCCEEEEEEcCCcEEEEECCCC--cE-EE-EeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee
Q psy14440        550 VQFHPNSNYVATGSSDRTIRLWDCVTG--SH-VR-LLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLT  625 (711)
Q Consensus       550 v~~sp~~~~latgs~Dg~I~iwD~~~~--~~-v~-~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~  625 (711)
                      +.|.+..+.=+.|+.+..+.+|+++..  .+ ++ ...-.+-.|..+.+-||++.+|++|.||+|+||+.++.+.+..++
T Consensus       211 ldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk  290 (323)
T KOG0322|consen  211 LDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK  290 (323)
T ss_pred             eeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh
Confidence            999886666678888888999988643  22 22 222334568889999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        626 GHTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       626 ~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      .|.+.|++++|+++..++|++|.|++|.+|++
T Consensus       291 yHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  291 YHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999999999999986

>KOG1007|consensus

Probab=99.80  E-value=4.6e-18  Score=167.19  Aligned_cols=256  Identities=25%  Similarity=0.316  Sum_probs=193.0

Q ss_pred             EEEEecCCCceEEEEECC-CCCEEEEEeCC-------CeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCe
Q psy14440        380 CYTLLNARQQVTCAEISE-DVSILAVGFSE-------SYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAE  451 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~-dg~~LatG~~d-------g~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  451 (711)
                      ...|..|.+.|..++-+| |.++|+++..+       -.+.||.+....-.    +                  +..+.+
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~----S------------------~~~tlE  113 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ----S------------------NSSTLE  113 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc----c------------------ccchhh
Confidence            345788889999999998 55677777653       23678887432111    0                  001223


Q ss_pred             eEEEee-cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE-EEEEe-----cCCCCEEEEEEcC--CCCEEEEEEC
Q psy14440        452 TTRTLV-GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC-LVVYK-----GHGHPVWDIKFSP--HGYYFASAGH  522 (711)
Q Consensus       452 ~~~~l~-~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~-~~~~~-----~h~~~V~~v~~sp--~g~~l~sgs~  522 (711)
                      .+..+. .+-+.|.|+.|.|++..|++-. |..|.+|++..... +..+.     +|....++-+|+|  +|+.+++.+ 
T Consensus       114 ~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-  191 (370)
T KOG1007|consen  114 CVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-  191 (370)
T ss_pred             HhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-
Confidence            333443 4567899999999999988876 78899999987655 33222     3456778889999  677777765 


Q ss_pred             CCeEEEEECCCCceeEEee-cCCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCC-cEEEEeeCCCCCeEEEEEecC-C
Q psy14440        523 DRMARLWATDSYHPLRLFV-GHYSDVDCVQFHPNSN-YVATGSSDRTIRLWDCVTG-SHVRLLTGHKAPVYALSFSVC-G  598 (711)
Q Consensus       523 Dg~i~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~-~latgs~Dg~I~iwD~~~~-~~v~~~~~h~~~I~~la~spd-g  598 (711)
                      |+++..||+++.+....+. .|...|..+.|+|+.. +|++|+.||.|+|||.+.- ..+..+.+|...|.++.|+|. .
T Consensus       192 d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd  271 (370)
T KOG1007|consen  192 DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD  271 (370)
T ss_pred             CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc
Confidence            8999999999876655443 6888899999999865 5888999999999999864 568889999999999999985 5


Q ss_pred             CEEEEEeCCCcEEEEECCCC-----------------------------eEEEEeeCCCCCEEEEEEeC-CCCEEEEEeC
Q psy14440        599 RFLASAGGDGNVHMWDLSNG-----------------------------HLLTLLTGHTDVVRALCFSR-DGNILASSGQ  648 (711)
Q Consensus       599 ~~Lasgs~Dg~I~iwDl~sg-----------------------------~~i~~l~~h~~~V~sl~fsp-dg~~Lasgs~  648 (711)
                      ++|.+||.|..|.+|...+-                             ..+.++..|...|++++||. |--++|+-+.
T Consensus       272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY  351 (370)
T KOG1007|consen  272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY  351 (370)
T ss_pred             eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence            67889999999999964320                             12446678999999999987 5557888999


Q ss_pred             CCcEEEEeCCC
Q psy14440        649 DCSVKLWDFAK  659 (711)
Q Consensus       649 Dg~V~iWdl~~  659 (711)
                      ||.|.|=.+..
T Consensus       352 DGRviIs~V~r  362 (370)
T KOG1007|consen  352 DGRVIISSVPR  362 (370)
T ss_pred             CceEEeecCCh
Confidence            99999877654

>KOG1524|consensus

Probab=99.79  E-value=2e-18  Score=181.46  Aligned_cols=254  Identities=15%  Similarity=0.221  Sum_probs=196.2

Q ss_pred             cCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeec------------------cCccccccccccCCcEEEEEe
Q psy14440        385 NARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMK------------------SSDQLQDIEMECDDILVRIMD  446 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~------------------~~~~~~~l~~~~~d~~i~i~d  446 (711)
                      .|...|.|+.|+.....+.+++++..++-|++.......+.                  .......+++.++||.+.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            45566779999998888877776666666666544322111                  112234567778888888887


Q ss_pred             cCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeE
Q psy14440        447 ERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMA  526 (711)
Q Consensus       447 ~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i  526 (711)
                       ..++..+....|.+.|.+-.|++||.-|+++++||.|++|+- +|-...++.....+|.|++|.|+.+.++.+. .+.+
T Consensus        92 -k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~  168 (737)
T KOG1524|consen   92 -KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHI  168 (737)
T ss_pred             -ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec-CCeE
Confidence             566677788899999999999999999999999999999985 3444444444677899999999887666654 3567


Q ss_pred             EEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeC
Q psy14440        527 RLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~  606 (711)
                      .+=.+.....+.....|.+-|.|+.|++.++.+++|+.|-..+|||. .|..+..-..|..+|++++|.|+ +.++.|+.
T Consensus       169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~  246 (737)
T KOG1524|consen  169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY  246 (737)
T ss_pred             EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeee
Confidence            77777766667778899999999999999999999999999999995 46667777789999999999999 66666654


Q ss_pred             CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy14440        607 DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLW  655 (711)
Q Consensus       607 Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iW  655 (711)
                      + ++++           -+...+.|..++||+||..+++|+..|.|.+=
T Consensus       247 n-t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  247 N-TARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             e-eeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            2 3441           12235789999999999999999999987653

>KOG1188|consensus

Probab=99.79  E-value=2.3e-18  Score=173.10  Aligned_cols=229  Identities=21%  Similarity=0.387  Sum_probs=172.6

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcC--CCCEEEE
Q psy14440        400 SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSP--DRSLLLS  477 (711)
Q Consensus       400 ~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fsp--dg~~L~s  477 (711)
                      +.+|+|.++|.|++||..                               ++.....+.+|.+.+..+.|..  ....+.+
T Consensus        41 ~~vav~lSngsv~lyd~~-------------------------------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s   89 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKG-------------------------------TGQLLEEFKGPPATTNGVRFISCDSPHGVIS   89 (376)
T ss_pred             eeEEEEecCCeEEEEecc-------------------------------chhhhheecCCCCcccceEEecCCCCCeeEE
Confidence            678888889989988874                               4556678888999999999977  4568999


Q ss_pred             EeCCCeEEEEECCCCeEEEE--EecCC-CCEEEEEEcCCCCEEEEEE----CCCeEEEEECCCCce-eEE-eecCCCCee
Q psy14440        478 CSQDNTIRLWSLLLWRCLVV--YKGHG-HPVWDIKFSPHGYYFASAG----HDRMARLWATDSYHP-LRL-FVGHYSDVD  548 (711)
Q Consensus       478 ~s~Dg~V~iwdl~t~~~~~~--~~~h~-~~V~~v~~sp~g~~l~sgs----~Dg~i~lwd~~~~~~-~~~-~~~h~~~V~  548 (711)
                      |+.||+|++||+++......  +..+. .+..+++..-.++.+++|+    .+..+.+||++..+. ++. +..|..+|+
T Consensus        90 ~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT  169 (376)
T KOG1188|consen   90 CSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVT  169 (376)
T ss_pred             eccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcce
Confidence            99999999999987665443  44444 4667777776788888886    477899999998766 554 447999999


Q ss_pred             EEEEcC-CCCEEEEEEcCCcEEEEECCCCcE---EEEeeCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeE---
Q psy14440        549 CVQFHP-NSNYVATGSSDRTIRLWDCVTGSH---VRLLTGHKAPVYALSFSVCG-RFLASAGGDGNVHMWDLSNGHL---  620 (711)
Q Consensus       549 ~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~---v~~~~~h~~~I~~la~spdg-~~Lasgs~Dg~I~iwDl~sg~~---  620 (711)
                      +++||| +.+.|++||.||-|.|||+.....   +.....|.+.|.++.|..++ +.|.+-+..++..+|+++.+..   
T Consensus       170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~  249 (376)
T KOG1188|consen  170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW  249 (376)
T ss_pred             eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence            999999 678999999999999999875422   22223467778888888766 3466666677777777544311   


Q ss_pred             ----------------------------------------------------------EEEeeC-CCCCEEEEEEeCCCC
Q psy14440        621 ----------------------------------------------------------LTLLTG-HTDVVRALCFSRDGN  641 (711)
Q Consensus       621 ----------------------------------------------------------i~~l~~-h~~~V~sl~fspdg~  641 (711)
                                                                                +..+.+ |...|+++.|...+.
T Consensus       250 ~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~  329 (376)
T KOG1188|consen  250 LENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND  329 (376)
T ss_pred             ccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc
Confidence                                                                      111222 344567777877889


Q ss_pred             EEEEEeCCCcEEEEeCCC
Q psy14440        642 ILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       642 ~Lasgs~Dg~V~iWdl~~  659 (711)
                      ++.|||.||.|.+|....
T Consensus       330 ~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  330 VLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             eeeccCCCceEEEEecCC
Confidence            999999999999999743

>KOG0649|consensus

Probab=99.79  E-value=2.7e-17  Score=158.26  Aligned_cols=241  Identities=19%  Similarity=0.228  Sum_probs=183.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEE
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSF  468 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~f  468 (711)
                      .|.+-+|+|.+++|++|..+|.|.+.++.+-.....                     .......+...++|.++|+.++|
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa---------------------~~~gk~~iv~eqahdgpiy~~~f   70 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA---------------------EPPGKLKIVPEQAHDGPIYYLAF   70 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc---------------------CCCCCcceeeccccCCCeeeeee
Confidence            466678999999999999999999999854211100                     11233445566899999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCeE----------EEEEe---cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q psy14440        469 SPDRSLLLSCSQDNTIRLWSLLLWRC----------LVVYK---GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH  535 (711)
Q Consensus       469 spdg~~L~s~s~Dg~V~iwdl~t~~~----------~~~~~---~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~  535 (711)
                      .  ..+|++|+. |.|+-|.......          ..-++   ..--.|+++...|..+-+++++.|+.++.||+++++
T Consensus        71 ~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~  147 (325)
T KOG0649|consen   71 H--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR  147 (325)
T ss_pred             e--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE
Confidence            8  457787765 9999998743221          11111   112357888899988888888899999999999999


Q ss_pred             eeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC----------CCCeEEEEEecCCCEEEEEe
Q psy14440        536 PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH----------KAPVYALSFSVCGRFLASAG  605 (711)
Q Consensus       536 ~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h----------~~~I~~la~spdg~~Lasgs  605 (711)
                      ..+.+.||...|.|+.--.....+++|+.||++|+||+++++++..+...          ...|.+++.  +..+|++|+
T Consensus       148 i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg  225 (325)
T KOG0649|consen  148 IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG  225 (325)
T ss_pred             EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC
Confidence            99999999999999998656668999999999999999999999887532          124566664  466888776


Q ss_pred             CCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        606 GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       606 ~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      . ..+.+|++++.++...+.. .+.|..+.|.  ...++++|..+.|.-|.+..
T Consensus       226 G-p~lslwhLrsse~t~vfpi-pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  226 G-PKLSLWHLRSSESTCVFPI-PARVHLVDFV--DDCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             C-CceeEEeccCCCceEEEec-ccceeEeeee--cceEEEeccccceeeeeecc
Confidence            4 5799999999888777753 4567788886  44677788888999998865

>KOG1538|consensus

Probab=99.79  E-value=4.6e-18  Score=182.30  Aligned_cols=244  Identities=15%  Similarity=0.263  Sum_probs=195.8

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      ..+.++.+|.+.|+|++||.||+.+|+|+.|..|.||+-.-.                              |  + --.
T Consensus        44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE------------------------------G--~-LkY   90 (1081)
T KOG1538|consen   44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE------------------------------G--I-LKY   90 (1081)
T ss_pred             ccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc------------------------------c--e-eee
Confidence            456789999999999999999999999999999999985211                              1  1 112


Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      .|...|.|+.|+|-...|+||+-.. .-+|+...... ..++ ....|.+++|..||.||+.|-.+|+|.+-+-.....+
T Consensus        91 SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V-~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~  167 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSV-SKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV  167 (1081)
T ss_pred             ccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhH-Hhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence            5899999999999999999998643 77888764332 2222 2557889999999999999999999999866544433


Q ss_pred             EEee--cCCCCeeEEEEcCCC-----CEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy14440        538 RLFV--GHYSDVDCVQFHPNS-----NYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNV  610 (711)
Q Consensus       538 ~~~~--~h~~~V~~v~~sp~~-----~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I  610 (711)
                      ++-.  |..++|.+|+|+|+.     ..+++.....++.+|.+ +|+.+..-..-.-.-.|+.+.++|.|+..||.|+.+
T Consensus       168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L  246 (1081)
T KOG1538|consen  168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQL  246 (1081)
T ss_pred             EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCCCce
Confidence            3322  578899999999963     46888888888888876 455554333334456789999999999999999999


Q ss_pred             EEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        611 HMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       611 ~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      .+|. +.|-.+.++......|++++..|++++++.|+.||+|..|++-.
T Consensus       247 ~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  247 SLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             EEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            9997 67888888877788999999999999999999999999999753

>KOG1538|consensus

Probab=99.78  E-value=1.1e-17  Score=179.39  Aligned_cols=231  Identities=17%  Similarity=0.307  Sum_probs=182.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEE
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSF  468 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~f  468 (711)
                      .|..++|-|||+.|+.+..+ .+.|||                               .+.|....++.+|...|+|++|
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD-------------------------------~ndG~llqtLKgHKDtVycVAy   61 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYD-------------------------------TSDGTLLQPLKGHKDTVYCVAY   61 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEe-------------------------------CCCcccccccccccceEEEEEE
Confidence            78999999999988776543 355554                               4677788899999999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCee
Q psy14440        469 SPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVD  548 (711)
Q Consensus       469 spdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~  548 (711)
                      +.||+.++||+.|..|.+|+-.- +-+..| .|+..|.|+.|+|-.+.+++++-. ..-+|+.+.....+ . .....+.
T Consensus        62 s~dGkrFASG~aDK~VI~W~~kl-EG~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~-kss~R~~  136 (1081)
T KOG1538|consen   62 AKDGKRFASGSADKSVIIWTSKL-EGILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-H-KSSSRII  136 (1081)
T ss_pred             ccCCceeccCCCceeEEEecccc-cceeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-h-hhheeEE
Confidence            99999999999999999998653 223334 499999999999999999999853 46688877543221 1 1345688


Q ss_pred             EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee--CCCCCeEEEEEecCC-----CEEEEEeCCCcEEEEECCCCeEE
Q psy14440        549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT--GHKAPVYALSFSVCG-----RFLASAGGDGNVHMWDLSNGHLL  621 (711)
Q Consensus       549 ~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~--~h~~~I~~la~spdg-----~~Lasgs~Dg~I~iwDl~sg~~i  621 (711)
                      |++|..||.|++.|-.+|+|.|-+-.....++.-.  |.+++|.+++|+|..     ..+++.+...++.+|.+ +|+.+
T Consensus       137 ~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~I  215 (1081)
T KOG1538|consen  137 CCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQI  215 (1081)
T ss_pred             EeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceee
Confidence            99999999999999999999999754333333332  577899999999863     47888888888888887 57777


Q ss_pred             EEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        622 TLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       622 ~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      ..-+.-.-...++++.++|.+++.||.|+.+++|--
T Consensus       216 gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR  251 (1081)
T KOG1538|consen  216 GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR  251 (1081)
T ss_pred             cccccCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence            655544555678999999999999999999999864

>KOG0290|consensus

Probab=99.78  E-value=4e-17  Score=160.80  Aligned_cols=232  Identities=20%  Similarity=0.367  Sum_probs=176.6

Q ss_pred             ecccCCEEEEEEcCCCC-----EEEEEeCCCeEEEEECCC--CeE--EEEE-----ecCCCCEEEEEEcC-CCCEEEEEE
Q psy14440        457 VGHEGPVRKLSFSPDRS-----LLLSCSQDNTIRLWSLLL--WRC--LVVY-----KGHGHPVWDIKFSP-HGYYFASAG  521 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~-----~L~s~s~Dg~V~iwdl~t--~~~--~~~~-----~~h~~~V~~v~~sp-~g~~l~sgs  521 (711)
                      ..|.-+++.+.|.|+..     .|++++ | .+|+|.+..  .+.  ...+     ..+..++++..|+. +-+++.++|
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            46889999999999763     455544 3 599999863  211  1111     23567899999988 668999999


Q ss_pred             CCCeEEEEECCCCce---eEEeecCCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEee-C--CCCCeEEEEE
Q psy14440        522 HDRMARLWATDSYHP---LRLFVGHYSDVDCVQFHPNS-NYVATGSSDRTIRLWDCVTGSHVRLLT-G--HKAPVYALSF  594 (711)
Q Consensus       522 ~Dg~i~lwd~~~~~~---~~~~~~h~~~V~~v~~sp~~-~~latgs~Dg~I~iwD~~~~~~v~~~~-~--h~~~I~~la~  594 (711)
                      -|.++.|||++++..   ...+..|...|..|+|...+ +.+|+.+.||.||+||++..+.-..+. .  ...+...++|
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            999999999998633   44567899999999999754 568889999999999999876544332 2  2567888999


Q ss_pred             ec-CCCEEEEEeCC-CcEEEEECCC-CeEEEEeeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCCCccCccccc
Q psy14440        595 SV-CGRFLASAGGD-GNVHMWDLSN-GHLLTLLTGHTDVVRALCFSRD-GNILASSGQDCSVKLWDFAKLSDEVGTEEVN  670 (711)
Q Consensus       595 sp-dg~~Lasgs~D-g~I~iwDl~s-g~~i~~l~~h~~~V~sl~fspd-g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~  670 (711)
                      ++ |-+++|+-..| ..|.|.|++. +..+.++++|.+.|+.++|.|. +..|++||.|..+-+||+......       
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~-------  323 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-------  323 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc-------
Confidence            87 45678876554 5799999987 4678999999999999999995 568999999999999999875431       


Q ss_pred             cccccccccccccceeeecccCCcceEEEEEcc-CCeee
Q psy14440        671 LSHSADIKNSSLAYLVRSYKTKASPLLHLIFSR-RNILL  708 (711)
Q Consensus       671 ~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~-~n~ll  708 (711)
                                .....+.+|. ....|..++|++ ++..+
T Consensus       324 ----------~~~dPilay~-a~~EVNqi~Ws~~~~Dwi  351 (364)
T KOG0290|consen  324 ----------NGEDPILAYT-AGGEVNQIQWSSSQPDWI  351 (364)
T ss_pred             ----------CCCCchhhhh-ccceeeeeeecccCCCEE
Confidence                      1233344455 777899999984 34433

>KOG0303|consensus

Probab=99.78  E-value=1.1e-17  Score=170.71  Aligned_cols=205  Identities=21%  Similarity=0.363  Sum_probs=167.8

Q ss_pred             EeecccCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-------CeEEEEEecCCCCEEEEEEcCCC-CEEEEEECCCe
Q psy14440        455 TLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLL-------WRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRM  525 (711)
Q Consensus       455 ~l~~h~~~V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t-------~~~~~~~~~h~~~V~~v~~sp~g-~~l~sgs~Dg~  525 (711)
                      .+.||+++|..++|+| +...|+|||.|.+|.||.+-.       .+.+..+.+|...|--|+|+|.. +.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4679999999999999 556899999999999999843       24577889999999999999954 68899999999


Q ss_pred             EEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCC-eEEEEEecCCCEEEEE
Q psy14440        526 ARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAP-VYALSFSVCGRFLASA  604 (711)
Q Consensus       526 i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~-I~~la~spdg~~Lasg  604 (711)
                      |.+|++.+++.+..+. |..-|.+++|+-||.+|+|.+.|+.|||||.++++.+..-.+|.+. -..+.|-.+|.++.+|
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            9999999999888877 9999999999999999999999999999999999999888778753 4456677888855444


Q ss_pred             e---CCCcEEEEECCCCe---EEEEeeCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCC
Q psy14440        605 G---GDGNVHMWDLSNGH---LLTLLTGHTDVVRALCFSRDGNILASSG-QDCSVKLWDFAKLS  661 (711)
Q Consensus       605 s---~Dg~I~iwDl~sg~---~i~~l~~h~~~V~sl~fspdg~~Lasgs-~Dg~V~iWdl~~~~  661 (711)
                      -   .+..+-+||..+-+   .+.++... +.|.---|.+|.++++.+| .||.||-|.+..-.
T Consensus       235 fsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  235 FSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            3   46789999876532   34445433 4455556788888766555 69999999998643

>KOG1034|consensus

Probab=99.78  E-value=1.4e-17  Score=166.63  Aligned_cols=252  Identities=22%  Similarity=0.314  Sum_probs=189.4

Q ss_pred             cCCcEEEEEecCCCeeEEEee-----cccCCEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEE
Q psy14440        437 CDDILVRIMDERNAETTRTLV-----GHEGPVRKLSFSPD----RSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWD  507 (711)
Q Consensus       437 ~~d~~i~i~d~~~~~~~~~l~-----~h~~~V~~l~fspd----g~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~  507 (711)
                      .....+.+|......-++.+.     .|....+.++|+-|    +-+|+.|+.-|.|+|.|+.++++...+.+|...|..
T Consensus        61 vG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINe  140 (385)
T KOG1034|consen   61 VGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINE  140 (385)
T ss_pred             eCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchh
Confidence            344455555543322222222     36677888999764    337899999999999999999999999999999999


Q ss_pred             EEEcCCC-CEEEEEECCCeEEEEECCCCceeEEee---cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-----
Q psy14440        508 IKFSPHG-YYFASAGHDRMARLWATDSYHPLRLFV---GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH-----  578 (711)
Q Consensus       508 v~~sp~g-~~l~sgs~Dg~i~lwd~~~~~~~~~~~---~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~-----  578 (711)
                      +.++|+. ++++++|.|.+||+|++++..++.+|.   ||...|.++.|+.+|.+|++++.|.++++|++...+.     
T Consensus       141 ik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE  220 (385)
T KOG1034|consen  141 IKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE  220 (385)
T ss_pred             hhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh
Confidence            9999955 799999999999999999999998876   5999999999999999999999999999999873210     


Q ss_pred             --------------------EE---EeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-C-------------eEE
Q psy14440        579 --------------------VR---LLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN-G-------------HLL  621 (711)
Q Consensus       579 --------------------v~---~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s-g-------------~~i  621 (711)
                                          +.   +-..|...|.|+.|-  |.++++-+.++.|..|.... +             ..+
T Consensus       221 ~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~  298 (385)
T KOG1034|consen  221 LSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTIL  298 (385)
T ss_pred             hhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeee
Confidence                                01   112366677777775  78999999999999997621 1             234


Q ss_pred             EEeeCCCCCEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEE
Q psy14440        622 TLLTGHTDVVRALCFSR--DGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHL  699 (711)
Q Consensus       622 ~~l~~h~~~V~sl~fsp--dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v  699 (711)
                      .++.-....|+-+.|+-  -+++||.|...|.|.+||++.......+                   -.+-.-....|...
T Consensus       299 ~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t-------------------tl~~s~~~~tVRQ~  359 (385)
T KOG1034|consen  299 GEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT-------------------TLTHSKSGSTVRQT  359 (385)
T ss_pred             eEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc-------------------eEEeccccceeeee
Confidence            44555556778776654  5789999999999999999874432110                   00122234578888


Q ss_pred             EEccCCeeee
Q psy14440        700 IFSRRNILLR  709 (711)
Q Consensus       700 ~Fs~~n~lla  709 (711)
                      +||+|+.+|.
T Consensus       360 sfS~dgs~lv  369 (385)
T KOG1034|consen  360 SFSRDGSILV  369 (385)
T ss_pred             eecccCcEEE
Confidence            8999887664

>KOG0650|consensus

Probab=99.77  E-value=2.4e-17  Score=175.64  Aligned_cols=275  Identities=18%  Similarity=0.251  Sum_probs=212.5

Q ss_pred             ceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCC--EEEEEeCCCeEEEEEC--------
Q psy14440        420 KLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRS--LLLSCSQDNTIRLWSL--------  489 (711)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~--~L~s~s~Dg~V~iwdl--------  489 (711)
                      .++++.....+..++.|+++|++++|...++.+++++.- .+.|.|++|+|.+.  .|+++-... +.|.+.        
T Consensus       402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~  479 (733)
T KOG0650|consen  402 LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEV  479 (733)
T ss_pred             eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhh
Confidence            334444455678899999999999999999999988763 55899999999765  344433332 333332        


Q ss_pred             -------------------------CC---C-eEEEEEecCCCCEEEEEEcCCCCEEEEEECC---CeEEEEECCCCcee
Q psy14440        490 -------------------------LL---W-RCLVVYKGHGHPVWDIKFSPHGYYFASAGHD---RMARLWATDSYHPL  537 (711)
Q Consensus       490 -------------------------~t---~-~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D---g~i~lwd~~~~~~~  537 (711)
                                               ..   . .-++..-.|...|..|.|+..|.||++...+   ..|.|+++......
T Consensus       480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ  559 (733)
T KOG0650|consen  480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ  559 (733)
T ss_pred             cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc
Confidence                                     10   0 0123334588899999999999999998754   56888998877666


Q ss_pred             EEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy14440        538 RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       538 ~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s  617 (711)
                      .-|....+.|.++.|||...+|++++ ...|+|||+.....++.+......|.++++++.|..|+.|+.|+.+..||+.-
T Consensus       560 ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldl  638 (733)
T KOG0650|consen  560 SPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDL  638 (733)
T ss_pred             CchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence            66666778899999999999999888 67899999998888877777777899999999999999999999999999975


Q ss_pred             C-eEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcc-
Q psy14440        618 G-HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASP-  695 (711)
Q Consensus       618 g-~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~p-  695 (711)
                      + +..+.++.|...|++++|++.-.++++|+.||++.|+.-.-.....+              +..-..|..+.+|... 
T Consensus       639 sskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~q--------------npliVPlK~L~gH~~~~  704 (733)
T KOG0650|consen  639 SSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQ--------------NPLIVPLKRLRGHEKTN  704 (733)
T ss_pred             CcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhc--------------CCceEeeeeccCceeec
Confidence            4 67888999999999999999999999999999999997554333222              2233445555555554 


Q ss_pred             ---eEEEEEccCCeeee--CC
Q psy14440        696 ---LLHLIFSRRNILLR--GP  711 (711)
Q Consensus       696 ---V~~v~Fs~~n~lla--Ga  711 (711)
                         |..+.|.|+--.|.  ||
T Consensus       705 ~~gVLd~~wHP~qpWLfsAGA  725 (733)
T KOG0650|consen  705 DLGVLDTIWHPRQPWLFSAGA  725 (733)
T ss_pred             ccceEeecccCCCceEEecCC
Confidence               99999999887665  65

>KOG1963|consensus

Probab=99.77  E-value=1.3e-16  Score=177.67  Aligned_cols=286  Identities=23%  Similarity=0.305  Sum_probs=213.6

Q ss_pred             cCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEE
Q psy14440        385 NARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVR  464 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~  464 (711)
                      .|.-.++|.++|++++++|+|..||.|.+|.-.+.+                           ......+.+.-|...|.
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~---------------------------~~~~t~t~lHWH~~~V~  255 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS---------------------------DDSETCTLLHWHHDEVN  255 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccc---------------------------cccccceEEEecccccc
Confidence            355568999999999999999999999999753210                           12234566778999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeec--
Q psy14440        465 KLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG--  542 (711)
Q Consensus       465 ~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~--  542 (711)
                      +++|+.+|.+|+|||..|.+.+|.+.+++ ..-+..-+++|..+.++|++.+.+....|..|.+....+......+.|  
T Consensus       256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~  334 (792)
T KOG1963|consen  256 SLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIK  334 (792)
T ss_pred             eeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCcc
Confidence            99999999999999999999999999988 444455688999999999999999999999999997755444333332  


Q ss_pred             ---------CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC-----------CCCCeEEEEEecCCCEEE
Q psy14440        543 ---------HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG-----------HKAPVYALSFSVCGRFLA  602 (711)
Q Consensus       543 ---------h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~-----------h~~~I~~la~spdg~~La  602 (711)
                               ..+-.+.++++|..+.++..+..|.|.+||+.+.+.+..+..           +.-.+++++.+..|.+++
T Consensus       335 ~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~ma  414 (792)
T KOG1963|consen  335 PPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMA  414 (792)
T ss_pred             CCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEE
Confidence                     233467889999777888888899999999998877765531           223577888888899999


Q ss_pred             EEe--------CC--CcEEEEECCCC----eEEEEe-eCCCCCEEEEEEeC-C-CCEEEEEeCCCcEEEEeCCCCCCccC
Q psy14440        603 SAG--------GD--GNVHMWDLSNG----HLLTLL-TGHTDVVRALCFSR-D-GNILASSGQDCSVKLWDFAKLSDEVG  665 (711)
Q Consensus       603 sgs--------~D--g~I~iwDl~sg----~~i~~l-~~h~~~V~sl~fsp-d-g~~Lasgs~Dg~V~iWdl~~~~~~~~  665 (711)
                      |+-        .|  -.+++|-....    .+...+ ..|...+...++.+ . ...++++|.||.++||-+...++...
T Consensus       415 T~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k  494 (792)
T KOG1963|consen  415 TLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYK  494 (792)
T ss_pred             EeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCc
Confidence            874        23  36788965432    222222 36776666666554 2 33899999999999999976544322


Q ss_pred             ccccccccccccccccccceeeecccCCcceEEEEEccCCeeee-CC
Q psy14440        666 TEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR-GP  711 (711)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-Ga  711 (711)
                      ...           .-.-..+..|  |.+++.++.|+.||.+|| |+
T Consensus       495 ~~s-----------~W~c~~i~sy--~k~~i~a~~fs~dGslla~s~  528 (792)
T KOG1963|consen  495 KSS-----------NWTCKAIGSY--HKTPITALCFSQDGSLLAVSF  528 (792)
T ss_pred             Ccc-----------ceEEeeeecc--ccCcccchhhcCCCcEEEEec
Confidence            111           0122234445  899999999999999999 64

>KOG1523|consensus

Probab=99.76  E-value=7.1e-17  Score=161.19  Aligned_cols=242  Identities=20%  Similarity=0.318  Sum_probs=191.5

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      +.++--.+.|+|.+|+.|++.+|++-....|.||...+..                            -.+..+++..|.
T Consensus         4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~----------------------------~w~~~htls~Hd   55 (361)
T KOG1523|consen    4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD----------------------------LWEPAHTLSEHD   55 (361)
T ss_pred             EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC----------------------------CceeceehhhhC
Confidence            4455556899999999999999999999999999875432                            145678889999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECC---CCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSLL---LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~---t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      ..|++++|++..+.|++|+.|..-++|...   +++....+..++..+++|.|+|.++.|++||..+.|.||-.+....-
T Consensus        56 ~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW  135 (361)
T KOG1523|consen   56 KIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW  135 (361)
T ss_pred             cceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce
Confidence            999999999999999999999999999982   45566667779999999999999999999999999999988754322


Q ss_pred             ----EEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC------------------CCcEEEEeeCCCCCeEEEEEe
Q psy14440        538 ----RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV------------------TGSHVRLLTGHKAPVYALSFS  595 (711)
Q Consensus       538 ----~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~------------------~~~~v~~~~~h~~~I~~la~s  595 (711)
                          .+-..+.+.|+++.||||+-.|++||.|+.+|||..-                  -|..+..+....+.|..+.|+
T Consensus       136 WVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs  215 (361)
T KOG1523|consen  136 WVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS  215 (361)
T ss_pred             ehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC
Confidence                1223467889999999999999999999999998641                  123344444566889999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCe-EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy14440        596 VCGRFLASAGGDGNVHMWDLSNGH-LLTLLTGHTDVVRALCFSRDGNILASSGQDCS  651 (711)
Q Consensus       596 pdg~~Lasgs~Dg~I~iwDl~sg~-~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~  651 (711)
                      ++|..|+-.+.|+.|.+-|..... .+.......-+..++.|-.+. .++.+|.|..
T Consensus       216 ~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~c~  271 (361)
T KOG1523|consen  216 PSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYDCG  271 (361)
T ss_pred             CCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeecCCCCC
Confidence            999999999999999999987664 344443333667777776543 3444555533

>KOG1523|consensus

Probab=99.75  E-value=6.6e-17  Score=161.41  Aligned_cols=203  Identities=22%  Similarity=0.384  Sum_probs=173.3

Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECC---
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL---WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATD---  532 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t---~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~---  532 (711)
                      -..+|+|.+|++|+..++.+-....|.||....   ++...+++.|...|++|+|+|..+.|++|+.|+..++|...   
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            457899999999999999999999999998853   66888999999999999999999999999999999999883   


Q ss_pred             CCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE----EEeeCCCCCeEEEEEecCCCEEEEEeCCC
Q psy14440        533 SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV----RLLTGHKAPVYALSFSVCGRFLASAGGDG  608 (711)
Q Consensus       533 ~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v----~~~~~h~~~I~~la~spdg~~Lasgs~Dg  608 (711)
                      +.++.-.+..+...++||.|+|+++.+|+||..+.|.||-....+.-    .+-+.+.+.|++++|+|++-+|++|+.|+
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~  168 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG  168 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence            33566677789999999999999999999999999999987654432    22345678899999999999999999999


Q ss_pred             cEEEEEC-----C-------------CCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        609 NVHMWDL-----S-------------NGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       609 ~I~iwDl-----~-------------sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      ..+||..     .             -|.++.++....+.|..+.|+++|+.|+-.+.|++|.+=|.....
T Consensus       169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            9999963     1             134555565567889999999999999999999999998876543

>KOG0303|consensus

Probab=99.75  E-value=6.8e-17  Score=164.97  Aligned_cols=211  Identities=20%  Similarity=0.328  Sum_probs=170.3

Q ss_pred             EecCCCceEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccC
Q psy14440        383 LLNARQQVTCAEISE-DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEG  461 (711)
Q Consensus       383 l~~h~~~V~~l~fs~-dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~  461 (711)
                      +.+|.+.|..++|+| +...||+|+.|.+|.||++-.+-+..                        .-.+.+..|.||..
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~------------------------~ltepvv~L~gH~r  132 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR------------------------DLTEPVVELYGHQR  132 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc------------------------CcccceEEEeecce
Confidence            569999999999998 45789999999999999985432211                        12256788999999


Q ss_pred             CEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEe
Q psy14440        462 PVRKLSFSPDR-SLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF  540 (711)
Q Consensus       462 ~V~~l~fspdg-~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~  540 (711)
                      .|--+.|+|.. +.|+|++.|.+|.+||+.+++.+..+. |...|+++.|+-+|.+|++++.|+.|||||.++++.+..-
T Consensus       133 rVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~  211 (472)
T KOG0303|consen  133 RVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG  211 (472)
T ss_pred             eEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec
Confidence            99999999954 578999999999999999999999988 9999999999999999999999999999999999998887


Q ss_pred             ecCCCC-eeEEEEcCCCCEEEEEE---cCCcEEEEECCCCcE---EEEeeCCCCCeEEEEEecCCCEEEEEe-CCCcEEE
Q psy14440        541 VGHYSD-VDCVQFHPNSNYVATGS---SDRTIRLWDCVTGSH---VRLLTGHKAPVYALSFSVCGRFLASAG-GDGNVHM  612 (711)
Q Consensus       541 ~~h~~~-V~~v~~sp~~~~latgs---~Dg~I~iwD~~~~~~---v~~~~~h~~~I~~la~spdg~~Lasgs-~Dg~I~i  612 (711)
                      .+|.+. -..+.|-.+|..+-||.   +++.+.+||-.+-+.   ...+. ..+.|.---|.+|.+.|+.+| .||.|+-
T Consensus       212 ~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRY  290 (472)
T KOG0303|consen  212 VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRY  290 (472)
T ss_pred             ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEE
Confidence            777653 44566777888665554   478899999765433   23333 234455556788888877555 7999999


Q ss_pred             EECCCCe
Q psy14440        613 WDLSNGH  619 (711)
Q Consensus       613 wDl~sg~  619 (711)
                      |.+.+..
T Consensus       291 yEit~d~  297 (472)
T KOG0303|consen  291 FEITNEP  297 (472)
T ss_pred             EEecCCC
Confidence            9987765

>KOG1587|consensus

Probab=99.75  E-value=1.3e-16  Score=177.65  Aligned_cols=250  Identities=20%  Similarity=0.299  Sum_probs=190.1

Q ss_pred             cCCCceEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCE
Q psy14440        385 NARQQVTCAEISE-DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV  463 (711)
Q Consensus       385 ~h~~~V~~l~fs~-dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V  463 (711)
                      .....|+|+.|++ +..++|.|..+|.|.+||+.......                         ..........|..+|
T Consensus       240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-------------------------~s~ls~~~~sh~~~v  294 (555)
T KOG1587|consen  240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-------------------------PSGLSALEVSHSEPV  294 (555)
T ss_pred             ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-------------------------CcccccccccCCcCe
Confidence            3467899999998 55788999999999999997544211                         001122334689999


Q ss_pred             EEEEEcCCCC--EEEEEeCCCeEEEEECCCCeE------EEEEe------cCCCCEEEEEEcC-CCCEEEEEECCCeEEE
Q psy14440        464 RKLSFSPDRS--LLLSCSQDNTIRLWSLLLWRC------LVVYK------GHGHPVWDIKFSP-HGYYFASAGHDRMARL  528 (711)
Q Consensus       464 ~~l~fspdg~--~L~s~s~Dg~V~iwdl~t~~~------~~~~~------~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~l  528 (711)
                      +.+.|..+..  -++++|.||.|..|+++....      .....      .....+++++|.+ +-..|++|+.+|.|..
T Consensus       295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~  374 (555)
T KOG1587|consen  295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK  374 (555)
T ss_pred             EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence            9999977544  499999999999998864322      11111      2245688999988 5578999999999887


Q ss_pred             EECCCCc--------eeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-CCcEEEEeeCCCCCeEEEEEecCC-
Q psy14440        529 WATDSYH--------PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV-TGSHVRLLTGHKAPVYALSFSVCG-  598 (711)
Q Consensus       529 wd~~~~~--------~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~-~~~~v~~~~~h~~~I~~la~spdg-  598 (711)
                      -+....+        ....+..|.+.|+++.++|-+..++..+.|.+|+||... ....+..+..+...|++++|||.. 
T Consensus       375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp  454 (555)
T KOG1587|consen  375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP  454 (555)
T ss_pred             EeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc
Confidence            4433222        233555789999999999987777766669999999987 666777777788889999999965 


Q ss_pred             CEEEEEeCCCcEEEEECCCC--eEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        599 RFLASAGGDGNVHMWDLSNG--HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       599 ~~Lasgs~Dg~I~iwDl~sg--~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ..++++..||.|.|||+...  ..+...+.+....+.+.|+++|++|++|...|++++|++..
T Consensus       455 avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  455 AVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             eEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            47778888999999999653  34555555566677888999999999999999999999974

>KOG0290|consensus

Probab=99.74  E-value=8.4e-17  Score=158.55  Aligned_cols=245  Identities=20%  Similarity=0.297  Sum_probs=182.0

Q ss_pred             ecCCCceEEEEECCCC-----CEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        384 LNARQQVTCAEISEDV-----SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg-----~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      +.|.-.++.+.|.||.     .+||+.+  -.+|+|.+....-.....     .           +.  .+    ..-..
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~-----~-----------~L--~~----~kns~  148 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQ-----S-----------VL--NN----NKNSE  148 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehh-----h-----------hh--cc----Ccccc
Confidence            6788899999999987     3676654  479999986321110000     0           00  00    01224


Q ss_pred             ccCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe---EEEEEecCCCCEEEEEEcCCC-CEEEEEECCCeEEEEECCC
Q psy14440        459 HEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWR---CLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDS  533 (711)
Q Consensus       459 h~~~V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t~~---~~~~~~~h~~~V~~v~~sp~g-~~l~sgs~Dg~i~lwd~~~  533 (711)
                      +.+++++..|+. |-++|.++|-|.+..|||++++.   ....+-.|...|.+|+|...+ ..||++|.||.||+||++.
T Consensus       149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~  228 (364)
T KOG0290|consen  149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS  228 (364)
T ss_pred             cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence            677999999987 67899999999999999998863   355677899999999999855 5899999999999999997


Q ss_pred             CceeEEeec---CCCCeeEEEEcC-CCCEEEEEEcC-CcEEEEECCC-CcEEEEeeCCCCCeEEEEEecC-CCEEEEEeC
Q psy14440        534 YHPLRLFVG---HYSDVDCVQFHP-NSNYVATGSSD-RTIRLWDCVT-GSHVRLLTGHKAPVYALSFSVC-GRFLASAGG  606 (711)
Q Consensus       534 ~~~~~~~~~---h~~~V~~v~~sp-~~~~latgs~D-g~I~iwD~~~-~~~v~~~~~h~~~I~~la~spd-g~~Lasgs~  606 (711)
                      ..-..++-.   .......++|++ +-+|+||-..| ..|.|.|++. +..+..+.+|.+.|+.|+|.|. +..|++||+
T Consensus       229 leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD  308 (364)
T KOG0290|consen  229 LEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD  308 (364)
T ss_pred             cccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC
Confidence            654444332   145677888987 56788886654 5699999986 4668889999999999999995 568999999


Q ss_pred             CCcEEEEECCCCe------EEEEeeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEE
Q psy14440        607 DGNVHMWDLSNGH------LLTLLTGHTDVVRALCFSR-DGNILASSGQDCSVKL  654 (711)
Q Consensus       607 Dg~I~iwDl~sg~------~i~~l~~h~~~V~sl~fsp-dg~~Lasgs~Dg~V~i  654 (711)
                      |..+.|||+..--      .+..+. .++.|+.|.|++ .+.+++.+. ++++.+
T Consensus       309 D~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  309 DCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             cceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence            9999999997522      222233 457899999996 567888776 444444

>KOG2110|consensus

Probab=99.74  E-value=1.1e-15  Score=155.59  Aligned_cols=237  Identities=18%  Similarity=0.281  Sum_probs=183.2

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEE
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLS  467 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~  467 (711)
                      ..++.+.|+.|+..|.+|+.|| -++|+.+....                               ..........|..+-
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-------------------------------~~~~~~~~~~IvEmL   53 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-------------------------------CFSKDTEGVSIVEML   53 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc-eeEEecCchHH-------------------------------hhcccCCCeEEEEee
Confidence            4577777999999999999999 67777643211                               000001112344555


Q ss_pred             EcCCCCEEEEEeCC--CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeec---
Q psy14440        468 FSPDRSLLLSCSQD--NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG---  542 (711)
Q Consensus       468 fspdg~~L~s~s~D--g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~---  542 (711)
                      |+.  .+++..+.+  ..+++++++.+..++.+. ....|.+|.++.+  .++++-.+. |+|||+++.+.+.++..   
T Consensus        54 FSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~  127 (391)
T KOG2110|consen   54 FSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPP  127 (391)
T ss_pred             ccc--ceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCC
Confidence            553  355555544  348999998888887776 4678999999753  566665544 99999999988877654   


Q ss_pred             CCCCeeEEEEcCCCCEEEEEE--cCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCc-EEEEECCCCe
Q psy14440        543 HYSDVDCVQFHPNSNYVATGS--SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGN-VHMWDLSNGH  619 (711)
Q Consensus       543 h~~~V~~v~~sp~~~~latgs--~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~-I~iwDl~sg~  619 (711)
                      +...+.+++++.++.|+|.-+  ..|.|.+||+.+-+.+..+..|++.+-+++|+++|.+||++++.|+ ||||++.+|+
T Consensus       128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~  207 (391)
T KOG2110|consen  128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ  207 (391)
T ss_pred             CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc
Confidence            444566666666777998744  4689999999999999999999999999999999999999999996 7899999999


Q ss_pred             EEEEeeCCC--CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        620 LLTLLTGHT--DVVRALCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       620 ~i~~l~~h~--~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      .+.+|+...  ..|.+|+|++++.+|++.|..++|+||.+.....
T Consensus       208 kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~  252 (391)
T KOG2110|consen  208 KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSN  252 (391)
T ss_pred             EeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccccc
Confidence            999997543  4689999999999999999999999999987653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=1.7e-16  Score=176.64  Aligned_cols=234  Identities=17%  Similarity=0.205  Sum_probs=168.3

Q ss_pred             CcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeE--EEEEecCCCCEEEEEEcCC
Q psy14440        439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQD---NTIRLWSLLLWRC--LVVYKGHGHPVWDIKFSPH  513 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~D---g~V~iwdl~t~~~--~~~~~~h~~~V~~v~~sp~  513 (711)
                      +..+.+||..... .+.+..|...+.+.+|||||+.|+.++.+   ..|++||+.+++.  +..+.+|   ..+++|+|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence            4678888865444 56677888899999999999999887754   4699999988754  3333333   346899999


Q ss_pred             CCEEEEEE-CCCeEEEE--ECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCC-cEEEEeeCCCCC
Q psy14440        514 GYYFASAG-HDRMARLW--ATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTG-SHVRLLTGHKAP  588 (711)
Q Consensus       514 g~~l~sgs-~Dg~i~lw--d~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~-~~v~~~~~h~~~  588 (711)
                      |+.|++++ .+|.+.||  |+.++. .+.+..+...+.+.+|+|||+.|+.++ .+|...||++... .....+ ++.+ 
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-  335 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG-  335 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC-
Confidence            99888765 67876655  666555 445566777788999999999877665 4678888876432 223333 3443 


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccc
Q psy14440        589 VYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEE  668 (711)
Q Consensus       589 I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~  668 (711)
                       .+.+|+|||++|+.++.++ +.+||+.+++.......+  ...+++|+|||++|++++.+|.+++|++....       
T Consensus       336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~-------  404 (429)
T PRK01742        336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD-------  404 (429)
T ss_pred             -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECC-------
Confidence             4678999999999887764 666999988765333322  23578899999999999999999998874311       


Q ss_pred             cccccccccccccccceeeecccCCcceEEEEEccC
Q psy14440        669 VNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRR  704 (711)
Q Consensus       669 ~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~  704 (711)
                                    +..+..+.++...+...+|++.
T Consensus       405 --------------G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        405 --------------GRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             --------------CCceEEccCCCCCCCCcccCCC
Confidence                          2233445556666777888874

>KOG0644|consensus

Probab=99.74  E-value=8.4e-19  Score=192.37  Aligned_cols=209  Identities=27%  Similarity=0.480  Sum_probs=170.6

Q ss_pred             CeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q psy14440        450 AETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLW  529 (711)
Q Consensus       450 ~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lw  529 (711)
                      .+.++.+.||.+.|+|+.|...|.++++|+.|..|+||++++..++....||.+.|++++.+.+...++++|.|..|++|
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC--------------cEEEEe----------eC-
Q psy14440        530 ATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG--------------SHVRLL----------TG-  584 (711)
Q Consensus       530 d~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~--------------~~v~~~----------~~-  584 (711)
                      -+.++.++..+.||.+.|++++|+|-.    +.+.||++++||.+-.              ..+..+          ++ 
T Consensus       260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             ecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence            999999999999999999999999964    6778999999998711              111110          00 


Q ss_pred             -----CCCCeEEEEEecCC-----------CEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCC-CCEEEEEe
Q psy14440        585 -----HKAPVYALSFSVCG-----------RFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRD-GNILASSG  647 (711)
Q Consensus       585 -----h~~~I~~la~spdg-----------~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspd-g~~Lasgs  647 (711)
                           ....+.+++|..++           .+.+++-.+..+++|++.+|..+..+.+|...++-|.++|- ..+..++|
T Consensus       336 ~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag  415 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG  415 (1113)
T ss_pred             CCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhcc
Confidence                 00112223333222           23334445667899999999999999999999999999995 45677899


Q ss_pred             CCCcEEEEeCCCCCC
Q psy14440        648 QDCSVKLWDFAKLSD  662 (711)
Q Consensus       648 ~Dg~V~iWdl~~~~~  662 (711)
                      .||...|||+-....
T Consensus       416 ~dgst~iwdi~eg~p  430 (1113)
T KOG0644|consen  416 YDGSTIIWDIWEGIP  430 (1113)
T ss_pred             CCCceEeeecccCCc
Confidence            999999999976443

>KOG1587|consensus

Probab=99.73  E-value=5.5e-16  Score=172.76  Aligned_cols=250  Identities=21%  Similarity=0.246  Sum_probs=182.7

Q ss_pred             cEEEEEecCCCeeEEEeecccCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeE--EE----EEecCCCCEEEEEEcC
Q psy14440        440 ILVRIMDERNAETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRC--LV----VYKGHGHPVWDIKFSP  512 (711)
Q Consensus       440 ~~i~i~d~~~~~~~~~l~~h~~~V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t~~~--~~----~~~~h~~~V~~v~~sp  512 (711)
                      +.+.+|+......-.....-...|+++.|+| +..+|+.|+.+|.|.+||++.+..  ..    ....|..+++.+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            3678888776644344444567899999999 556788888999999999976554  21    2245889999999977


Q ss_pred             CC--CEEEEEECCCeEEEEECCCCce-eE-----Eee------cCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCC-
Q psy14440        513 HG--YYFASAGHDRMARLWATDSYHP-LR-----LFV------GHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTG-  576 (711)
Q Consensus       513 ~g--~~l~sgs~Dg~i~lwd~~~~~~-~~-----~~~------~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~-  576 (711)
                      +.  .-|++++.||.|..|+++.... ..     ...      .....+++++|.+ +-+.+++|+.+|.|.--+.... 
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            44  4599999999999998875432 11     111      1234588999998 5667999999999877443222 


Q ss_pred             --c-----EEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCeEEEEeeCCCCCEEEEEEeCCC-CEEEEEe
Q psy14440        577 --S-----HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS-NGHLLTLLTGHTDVVRALCFSRDG-NILASSG  647 (711)
Q Consensus       577 --~-----~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~-sg~~i~~l~~h~~~V~sl~fspdg-~~Lasgs  647 (711)
                        .     .+..+..|.+.|+++.++|=+..++..+.|.+|+||... ....+..+..+...|++++|||.- ..++++.
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d  461 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD  461 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence              1     123455688999999999987766666669999999987 667788888888889999999954 5888889


Q ss_pred             CCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee-C
Q psy14440        648 QDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR-G  710 (711)
Q Consensus       648 ~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-G  710 (711)
                      .||.|.|||+..-..                     ..+.+.+-.......+.|+..+.+|| |
T Consensus       462 ~~G~l~iWDLl~~~~---------------------~Pv~s~~~~~~~l~~~~~s~~g~~lavG  504 (555)
T KOG1587|consen  462 GDGNLDIWDLLQDDE---------------------EPVLSQKVCSPALTRVRWSPNGKLLAVG  504 (555)
T ss_pred             CCCceehhhhhcccc---------------------CCcccccccccccceeecCCCCcEEEEe
Confidence            999999999976332                     22222333355666777777787777 5

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=3.4e-15  Score=160.59  Aligned_cols=243  Identities=16%  Similarity=0.182  Sum_probs=166.1

Q ss_pred             cCCCceEEEEECCCCCEEEEEe-CCCeEEEEeCCC-CceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCC
Q psy14440        385 NARQQVTCAEISEDVSILAVGF-SESYIKLWSLVP-QKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGP  462 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg~~LatG~-~dg~I~vWdl~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~  462 (711)
                      .+.+....+++++|+++|++++ .++.|.+|++.. +++.                             ..... ...+.
T Consensus        32 ~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-----------------------------~~~~~-~~~~~   81 (330)
T PRK11028         32 DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-----------------------------FAAES-PLPGS   81 (330)
T ss_pred             ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-----------------------------Eeeee-cCCCC
Confidence            3446678899999999887664 478888898752 1111                             11111 12234


Q ss_pred             EEEEEEcCCCCEEEEEeC-CCeEEEEECCCC----eEEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCce
Q psy14440        463 VRKLSFSPDRSLLLSCSQ-DNTIRLWSLLLW----RCLVVYKGHGHPVWDIKFSPHGYYFASAG-HDRMARLWATDSYHP  536 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s~-Dg~V~iwdl~t~----~~~~~~~~h~~~V~~v~~sp~g~~l~sgs-~Dg~i~lwd~~~~~~  536 (711)
                      ...++|++++++|++++. ++.|.+|++.+.    +.+..+. +.....+++++|+|+++++++ .++.|.+||+++...
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~  160 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH  160 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence            578999999999988875 789999999642    2223232 234467789999998886555 679999999986432


Q ss_pred             eEE-----ee-cCCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCC--Cc--EEEEeeCC------CCCeEEEEEecCCC
Q psy14440        537 LRL-----FV-GHYSDVDCVQFHPNSNYVATGSS-DRTIRLWDCVT--GS--HVRLLTGH------KAPVYALSFSVCGR  599 (711)
Q Consensus       537 ~~~-----~~-~h~~~V~~v~~sp~~~~latgs~-Dg~I~iwD~~~--~~--~v~~~~~h------~~~I~~la~spdg~  599 (711)
                      +..     .. ........+.|+|+++++++++. +++|.+||+..  ++  .+..+..+      ......+.++|+|+
T Consensus       161 l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~  240 (330)
T PRK11028        161 LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR  240 (330)
T ss_pred             ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence            211     11 12344678999999999988876 89999999973  32  23333221      11234688999999


Q ss_pred             EEEEEeC-CCcEEEEECCCCe----EEEEeeCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEeCCC
Q psy14440        600 FLASAGG-DGNVHMWDLSNGH----LLTLLTGHTDVVRALCFSRDGNILASSGQ-DCSVKLWDFAK  659 (711)
Q Consensus       600 ~Lasgs~-Dg~I~iwDl~sg~----~i~~l~~h~~~V~sl~fspdg~~Lasgs~-Dg~V~iWdl~~  659 (711)
                      +|+++.. ++.|.+|++....    .+..... ......++|+++|++|++++. +++|.+|++..
T Consensus       241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            9999864 6899999986432    2222222 124567899999999998775 89999999864

>KOG1188|consensus

Probab=99.72  E-value=2.6e-16  Score=158.41  Aligned_cols=231  Identities=18%  Similarity=0.249  Sum_probs=174.9

Q ss_pred             CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcC--CCCEEEEEECCCeEEEEECCCCcee--EEeecCC-CCe
Q psy14440        473 SLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP--HGYYFASAGHDRMARLWATDSYHPL--RLFVGHY-SDV  547 (711)
Q Consensus       473 ~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp--~g~~l~sgs~Dg~i~lwd~~~~~~~--~~~~~h~-~~V  547 (711)
                      ..++++-..|+|++||..+++.+..++++...+..+.|..  ..+.+.+|+.||+|++||++.....  ..+..+. ...
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4688888899999999999999999999999999999987  5689999999999999999976443  3344454 466


Q ss_pred             eEEEEcCCCCEEEEEEc----CCcEEEEECCCCcE-EEEe-eCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeE
Q psy14440        548 DCVQFHPNSNYVATGSS----DRTIRLWDCVTGSH-VRLL-TGHKAPVYALSFSV-CGRFLASAGGDGNVHMWDLSNGHL  620 (711)
Q Consensus       548 ~~v~~sp~~~~latgs~----Dg~I~iwD~~~~~~-v~~~-~~h~~~I~~la~sp-dg~~Lasgs~Dg~I~iwDl~sg~~  620 (711)
                      .|++.+-+++.+++|+.    +-.|.+||++..+. ++.+ ..|...|++++|+| +-++|++|+.||.|.|||++....
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            77777778889998873    67899999998877 6554 57999999999999 467999999999999999976432


Q ss_pred             ---EEEeeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcce
Q psy14440        621 ---LTLLTGHTDVVRALCFSRDG-NILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPL  696 (711)
Q Consensus       621 ---i~~l~~h~~~V~sl~fspdg-~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV  696 (711)
                         +...-.|...|..+.|..++ +.|.+-+..++..+|+++...+....+.........-+.....++|..+......+
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~  280 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT  280 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence               22223467789999999877 35788889999999999988765544332222111111223455565565556666


Q ss_pred             EEEEEcc
Q psy14440        697 LHLIFSR  703 (711)
Q Consensus       697 ~~v~Fs~  703 (711)
                      ..++++.
T Consensus       281 ~~l~g~~  287 (376)
T KOG1188|consen  281 CALAGTD  287 (376)
T ss_pred             EEEeccc
Confidence            6666653

>KOG0642|consensus

Probab=99.71  E-value=6.8e-17  Score=171.86  Aligned_cols=229  Identities=24%  Similarity=0.337  Sum_probs=174.0

Q ss_pred             ceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecC-CCeeEEE
Q psy14440        377 SIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDER-NAETTRT  455 (711)
Q Consensus       377 s~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~  455 (711)
                      -..+|+|.+|.+.|.|++++.++..+.+|+.||+|+.|++-... ..                     +|.. .......
T Consensus       334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~-dp---------------------~ds~dp~vl~~~  391 (577)
T KOG0642|consen  334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQ-DP---------------------DDSYDPSVLSGT  391 (577)
T ss_pred             eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCC-Cc---------------------ccccCcchhccc
Confidence            45789999999999999999999999999999999999984211 00                     0111 1123457


Q ss_pred             eecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC--CCCEEEEEEcCCC-CEEEEEECCCeEEEEECC
Q psy14440        456 LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH--GHPVWDIKFSPHG-YYFASAGHDRMARLWATD  532 (711)
Q Consensus       456 l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h--~~~V~~v~~sp~g-~~l~sgs~Dg~i~lwd~~  532 (711)
                      +.||.+.|+.+++|.....|++|+.||+||+|+...... .++...  .+.-.++.+.... ...++...-+..-+++.+
T Consensus       392 l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e  470 (577)
T KOG0642|consen  392 LLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDME  470 (577)
T ss_pred             eeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhh
Confidence            889999999999999999999999999999999865554 333221  1222345544322 122222233333444555


Q ss_pred             CCceeEEeec-------CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEe
Q psy14440        533 SYHPLRLFVG-------HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAG  605 (711)
Q Consensus       533 ~~~~~~~~~~-------h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs  605 (711)
                      ....++++..       ....+.-+.++|++...+++..|+.|+++|..+++.+.....|...++++++.++|-+|++|+
T Consensus       471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s  550 (577)
T KOG0642|consen  471 VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS  550 (577)
T ss_pred             hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeec
Confidence            5555555432       224577899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEECCCCeEEEEeeCCC
Q psy14440        606 GDGNVHMWDLSNGHLLTLLTGHT  628 (711)
Q Consensus       606 ~Dg~I~iwDl~sg~~i~~l~~h~  628 (711)
                      .||+|++|.+....++.....|.
T Consensus       551 ~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  551 HDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             CCceeehhhccchheeecccccc
Confidence            99999999998888877776665

>KOG0771|consensus

Probab=99.71  E-value=1.2e-16  Score=165.29  Aligned_cols=195  Identities=27%  Similarity=0.358  Sum_probs=158.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEee--
Q psy14440        464 RKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFV--  541 (711)
Q Consensus       464 ~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~--  541 (711)
                      .+++|+.+|..|++|+.||++|||++.+...+.....|...|.++.|+|||+.+++.+.| .++||+++++..+....  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            789999999999999999999999988888888888899999999999999999999999 99999999997666544  


Q ss_pred             cCCCCeeEEEEcCCC---CE-EEE-EEcCCcEEEEECCCCcE-----EEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q psy14440        542 GHYSDVDCVQFHPNS---NY-VAT-GSSDRTIRLWDCVTGSH-----VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVH  611 (711)
Q Consensus       542 ~h~~~V~~v~~sp~~---~~-lat-gs~Dg~I~iwD~~~~~~-----v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~  611 (711)
                      +.......+.|+.++   .+ +|+ -...+.|+.||+....-     .+........|++++.|.||+++|.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence            223346677887765   33 332 23345677776543221     122222345799999999999999999999999


Q ss_pred             EEECCCCeEEEEe-eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        612 MWDLSNGHLLTLL-TGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       612 iwDl~sg~~i~~l-~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      |++..+-+++... +.|...|+.+.|+||.+++++.+.|.+.+|..+..
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999988877666 47999999999999999999999999999988764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=6.6e-16  Score=171.98  Aligned_cols=220  Identities=19%  Similarity=0.158  Sum_probs=159.2

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCC---CeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSE---SYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~d---g~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      ..+..|...+.+.+|||||+.||.++.+   ..|.+|++.+++..                             .+..+.
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-----------------------------~l~~~~  247 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-----------------------------VVASFR  247 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-----------------------------EEecCC
Confidence            3456777889999999999999887643   36888887543211                             122233


Q ss_pred             cccCCEEEEEEcCCCCEEEEEe-CCCeEEEE--ECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEECCC
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCS-QDNTIRLW--SLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG-HDRMARLWATDS  533 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s-~Dg~V~iw--dl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs-~Dg~i~lwd~~~  533 (711)
                      +|   ..+++|+|||+.|+.++ .+|.+.||  |+.++.. ..+..+...+.+..|+|+|+.|+.++ .+|...||+++.
T Consensus       248 g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~  323 (429)
T PRK01742        248 GH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA  323 (429)
T ss_pred             Cc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            33   34689999999888765 67866555  6665554 44555677788999999999877665 578888887653


Q ss_pred             C-ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q psy14440        534 Y-HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHM  612 (711)
Q Consensus       534 ~-~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~i  612 (711)
                      . .....+ ++..  .+..|+|+|++|++++.++ +.+||+.+++.......+  ...+++|+|||++|+.++.+|.+.+
T Consensus       324 ~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~  397 (429)
T PRK01742        324 SGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKV  397 (429)
T ss_pred             CCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceE
Confidence            2 222333 3443  4678999999999888765 566999988765443332  3456889999999999999998888


Q ss_pred             EEC--CCCeEEEEeeCCCCCEEEEEEeCC
Q psy14440        613 WDL--SNGHLLTLLTGHTDVVRALCFSRD  639 (711)
Q Consensus       613 wDl--~sg~~i~~l~~h~~~V~sl~fspd  639 (711)
                      |++  .+|+.+..+.+|.+.+...+|+|-
T Consensus       398 l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        398 LQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            875  468888889888888999999974

>KOG1334|consensus

Probab=99.70  E-value=7e-17  Score=168.83  Aligned_cols=279  Identities=24%  Similarity=0.386  Sum_probs=214.0

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee--------------eccCccccccccccCCcEEEEEe
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKA--------------MKSSDQLQDIEMECDDILVRIMD  446 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~--------------~~~~~~~~~l~~~~~d~~i~i~d  446 (711)
                      +.+..|.+.|+.+.|+..|..|++|+.|..|.+||+...+.+.              .........++..+.++.+++-.
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            4678899999999999999999999999999999997654221              11122345567777888887654


Q ss_pred             cC---CCeeEEEeecccCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEE---ecCCC---CEEEEEEcCCC-C
Q psy14440        447 ER---NAETTRTLVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSLLLWRCLVVY---KGHGH---PVWDIKFSPHG-Y  515 (711)
Q Consensus       447 ~~---~~~~~~~l~~h~~~V~~l~fspdg~-~L~s~s~Dg~V~iwdl~t~~~~~~~---~~h~~---~V~~v~~sp~g-~  515 (711)
                      +.   ..+..+.+..|.++|..++.-|+.. -|++|+.|+.|.-+|+++......+   +.+..   ...+++..|.. +
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~  295 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN  295 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence            32   2233567788999999999999654 6899999999999999765433322   22333   56788888854 5


Q ss_pred             EEEEEECCCeEEEEECCCCce------eEEee------cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC--C-----
Q psy14440        516 YFASAGHDRMARLWATDSYHP------LRLFV------GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT--G-----  576 (711)
Q Consensus       516 ~l~sgs~Dg~i~lwd~~~~~~------~~~~~------~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~--~-----  576 (711)
                      +|++|+.|..+++||.+....      +..|.      ...-.|+|++|+.++.-|.++-.|-.|++|.-..  |     
T Consensus       296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~  375 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP  375 (559)
T ss_pred             ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence            999999999999999875321      22222      2234599999998877777777788999995332  2     


Q ss_pred             -----cEE-EEeeCCCC--CeEEEEE-ecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEe
Q psy14440        577 -----SHV-RLLTGHKA--PVYALSF-SVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSG  647 (711)
Q Consensus       577 -----~~v-~~~~~h~~--~I~~la~-spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs  647 (711)
                           ..+ +.++||..  .|.++-| -|...|+++|++-|.|.||+-.+++++..+.+-...|+||.=+|.--+||++|
T Consensus       376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG  455 (559)
T KOG1334|consen  376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG  455 (559)
T ss_pred             CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC
Confidence                 223 33788865  4666655 57889999999999999999999999999988777999999999999999999


Q ss_pred             CCCcEEEEeCCC
Q psy14440        648 QDCSVKLWDFAK  659 (711)
Q Consensus       648 ~Dg~V~iWdl~~  659 (711)
                      -|..|+||--..
T Consensus       456 id~DVKIWTP~~  467 (559)
T KOG1334|consen  456 IDHDVKIWTPLT  467 (559)
T ss_pred             CccceeeecCCc
Confidence            999999998643

>KOG2111|consensus

Probab=99.70  E-value=2.3e-14  Score=143.42  Aligned_cols=285  Identities=15%  Similarity=0.246  Sum_probs=192.6

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEc
Q psy14440        390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFS  469 (711)
Q Consensus       390 V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fs  469 (711)
                      ..+++|+.|...+++|.++| .+||+.+.-+...-.                             .+....-.+..+-|-
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-----------------------------~~~~~G~~~veMLfR   57 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-----------------------------QFIDGGFKIVEMLFR   57 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-----------------------------ccccCchhhhhHhhh
Confidence            44599999999999999988 899998752211100                             000000111111121


Q ss_pred             CCCCEE-EEEeCC------CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECC-CCceeEEee
Q psy14440        470 PDRSLL-LSCSQD------NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATD-SYHPLRLFV  541 (711)
Q Consensus       470 pdg~~L-~s~s~D------g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~-~~~~~~~~~  541 (711)
                        .++| ++||.+      ..|.|||=...+++..+. ...+|.+|.+.++  .+++.- .+.|++|... +.+.++.+.
T Consensus        58 --~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~e  131 (346)
T KOG2111|consen   58 --SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIE  131 (346)
T ss_pred             --hceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeee
Confidence              1222 233332      469999977777777776 5789999999865  455543 5789999987 456666655


Q ss_pred             cCC--CCeeEEEEcCCCCEEEE-EEcCCcEEEEECCCCcE--EEEeeCCCCCeEEEEEecCCCEEEEEeCCCc-EEEEEC
Q psy14440        542 GHY--SDVDCVQFHPNSNYVAT-GSSDRTIRLWDCVTGSH--VRLLTGHKAPVYALSFSVCGRFLASAGGDGN-VHMWDL  615 (711)
Q Consensus       542 ~h~--~~V~~v~~sp~~~~lat-gs~Dg~I~iwD~~~~~~--v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~-I~iwDl  615 (711)
                      ...  ..+.+++-+-+..+||. |-.-|.|+|-|+...+.  ...+..|.+.|.|++.+-+|..+||+|..|+ |+|||.
T Consensus       132 t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt  211 (346)
T KOG2111|consen  132 TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDT  211 (346)
T ss_pred             cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEc
Confidence            433  22333333334455555 44579999999987654  4678899999999999999999999999995 799999


Q ss_pred             CCCeEEEEeeCC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccc-cccc-cccccccceeeeccc
Q psy14440        616 SNGHLLTLLTGH--TDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLS-HSAD-IKNSSLAYLVRSYKT  691 (711)
Q Consensus       616 ~sg~~i~~l~~h--~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~t  691 (711)
                      .+|+.+.+++..  ...|++++||+++.+||++|..|+|+|+.+.......... ...+ ...- .+--.+...+..|.-
T Consensus       212 ~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~-SSl~~~~~~lpky~~S~wS~~~f~l  290 (346)
T KOG2111|consen  212 EDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDES-SSLSFKRLVLPKYFSSEWSFAKFQL  290 (346)
T ss_pred             CCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcccc-ccccccccccchhcccceeEEEEEc
Confidence            999999999743  3579999999999999999999999999998644322211 0000 0000 001112344555666


Q ss_pred             CCcceEEEEEccC-Ceeee-CC
Q psy14440        692 KASPLLHLIFSRR-NILLR-GP  711 (711)
Q Consensus       692 ~~~pV~~v~Fs~~-n~lla-Ga  711 (711)
                      ..++..-++|..+ |.++| |+
T Consensus       291 ~~~~~~~~~fg~~~nsvi~i~~  312 (346)
T KOG2111|consen  291 PQGTQCIIAFGSETNTVIAICA  312 (346)
T ss_pred             cCCCcEEEEecCCCCeEEEEEe
Confidence            6788899999998 88877 53

>KOG1517|consensus

Probab=99.70  E-value=1.3e-15  Score=171.30  Aligned_cols=271  Identities=17%  Similarity=0.231  Sum_probs=200.5

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee----------------eccCccccccccccCCcEEEEEecCC-
Q psy14440        387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKA----------------MKSSDQLQDIEMECDDILVRIMDERN-  449 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~----------------~~~~~~~~~l~~~~~d~~i~i~d~~~-  449 (711)
                      .+.-..+.|++-...++++...-.|+|||.+.++...                +....+...+.+++.||.|+||+... 
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            3456778899999999999988899999997655321                11122334466788999999997532 


Q ss_pred             ----CeeEEEeec-------ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCEEEEEEcC-CCCE
Q psy14440        450 ----AETTRTLVG-------HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK-GHGHPVWDIKFSP-HGYY  516 (711)
Q Consensus       450 ----~~~~~~l~~-------h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~-~h~~~V~~v~~sp-~g~~  516 (711)
                          .+.+....+       ..+.=.-++|.....+|+++|.-..|+|||.....++..+. +....|+++.-+- .|+.
T Consensus      1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred             ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence                222322221       12222456777777788888878899999998877776654 2345566665443 5789


Q ss_pred             EEEEECCCeEEEEECCCCc---eeEEeecCCCC--eeEEEEcCCCCE-EEEEEcCCcEEEEECCCCcEEE--EeeCCC--
Q psy14440        517 FASAGHDRMARLWATDSYH---PLRLFVGHYSD--VDCVQFHPNSNY-VATGSSDRTIRLWDCVTGSHVR--LLTGHK--  586 (711)
Q Consensus       517 l~sgs~Dg~i~lwd~~~~~---~~~~~~~h~~~--V~~v~~sp~~~~-latgs~Dg~I~iwD~~~~~~v~--~~~~h~--  586 (711)
                      |++|..||.|++||.+...   .+.....|...  |..+.+.++|-- |++|+.||.|++||++......  .+..|.  
T Consensus      1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred             EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence            9999999999999998643   46667778887  999999987655 9999999999999999853222  223333  


Q ss_pred             C-CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCC-------CCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        587 A-PVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGH-------TDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       587 ~-~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h-------~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      + ..+++..+.+...+|+|+. +.|+||++. |+.+..++.+       .+.+.+++|+|.--+||+|+.|.+|.||...
T Consensus      1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             CccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence            3 5999999999999999998 999999974 5555554432       2568999999999999999999999999876


Q ss_pred             C
Q psy14440        659 K  659 (711)
Q Consensus       659 ~  659 (711)
                      +
T Consensus      1382 k 1382 (1387)
T KOG1517|consen 1382 K 1382 (1387)
T ss_pred             C
Confidence            5

>KOG0771|consensus

Probab=99.69  E-value=2.5e-16  Score=162.92  Aligned_cols=195  Identities=23%  Similarity=0.334  Sum_probs=155.6

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcC
Q psy14440        391 TCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSP  470 (711)
Q Consensus       391 ~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fsp  470 (711)
                      .+++|+.||+.||+|+.||++|||++..                               ...+.....|.+.|.++.|++
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-------------------------------~~t~l~e~~~~~eV~DL~FS~  196 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-------------------------------MLTILEEIAHHAEVKDLDFSP  196 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCc-------------------------------chhhhhhHhhcCccccceeCC
Confidence            6899999999999999999999999742                               233445567899999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEEe--cCCCCEEEEEEcCCC-----CEEEEEECCCeEEEEECCCCc-----eeE
Q psy14440        471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYK--GHGHPVWDIKFSPHG-----YYFASAGHDRMARLWATDSYH-----PLR  538 (711)
Q Consensus       471 dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~--~h~~~V~~v~~sp~g-----~~l~sgs~Dg~i~lwd~~~~~-----~~~  538 (711)
                      ||++|++.+.| ..+||+..++.++....  ........+.|+.++     ..++....-+.|+.|++...+     ..+
T Consensus       197 dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~  275 (398)
T KOG0771|consen  197 DGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLR  275 (398)
T ss_pred             CCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchh
Confidence            99999999999 79999999997666543  234456678888877     333444455677777665332     222


Q ss_pred             EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy14440        539 LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT-GHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~-~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s  617 (711)
                      ........|++++.+.+|+++|.|+.||.|.|++..+-+++..+. .|...|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus       276 ~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  276 KKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             hhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            333345679999999999999999999999999999888877664 7999999999999999999999998888887643

>KOG1524|consensus

Probab=99.68  E-value=5.4e-16  Score=163.42  Aligned_cols=198  Identities=19%  Similarity=0.303  Sum_probs=162.8

Q ss_pred             CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEE
Q psy14440        472 RSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQ  551 (711)
Q Consensus       472 g~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~  551 (711)
                      ...|+.++.||.+.+.+- .++.......|.+.|.+-.|+++|.-++++|+||.|++|+-. |-...++......|.|++
T Consensus        75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCAR  152 (737)
T ss_pred             cceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEE
Confidence            347888999999998874 477777888999999999999999999999999999999854 322233445667899999


Q ss_pred             EcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCE
Q psy14440        552 FHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVV  631 (711)
Q Consensus       552 ~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V  631 (711)
                      |.|+++-++.+. .+.+.|--+.....+-..+.|.+-|.++.|++..+.+++||+|.+.+|||- .|+.+..-..|..+|
T Consensus       153 W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~I  230 (737)
T KOG1524|consen  153 WAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAI  230 (737)
T ss_pred             ECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccce
Confidence            999988776654 467888888777777788899999999999999999999999999999994 678887788899999


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        632 RALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       632 ~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      ++++|+|+ +.++.||. +++|+   .                               +...+.|+.++||.||.-+|
T Consensus       231 TSva~npd-~~~~v~S~-nt~R~---~-------------------------------~p~~GSifnlsWS~DGTQ~a  272 (737)
T KOG1524|consen  231 TSVAFNPE-KDYLLWSY-NTARF---S-------------------------------SPRVGSIFNLSWSADGTQAT  272 (737)
T ss_pred             eeeeeccc-cceeeeee-eeeee---c-------------------------------CCCccceEEEEEcCCCceee
Confidence            99999999 66666664 35552   1                               11346899999999999887

>KOG1272|consensus

Probab=99.68  E-value=2.2e-16  Score=164.24  Aligned_cols=259  Identities=19%  Similarity=0.229  Sum_probs=205.6

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeec----------cCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMK----------SSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~----------~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      .-+-..+.++.+|++|+.|+..|.|..+|+.+.++..-.          +-... .+........+++|| ..|..++.+
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHne-q~~AVAQK~y~yvYD-~~GtElHCl  206 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNE-QFFAVAQKKYVYVYD-NNGTELHCL  206 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcch-HHHHhhhhceEEEec-CCCcEEeeh
Confidence            345668899999999999999999999999888765421          11112 233445567789999 567777777


Q ss_pred             ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP  536 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~  536 (711)
                      ..|. .|..+.|-|..-+|++++..|.++--|+.+|+.+..+....+.+..++-+|.+-.+-+|...|+|.+|+.....+
T Consensus       207 k~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP  285 (545)
T KOG1272|consen  207 KRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP  285 (545)
T ss_pred             hhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence            7664 589999999998999999999999999999999999988888999999999888999999999999999999999


Q ss_pred             eEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE-C
Q psy14440        537 LRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD-L  615 (711)
Q Consensus       537 ~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwD-l  615 (711)
                      +..+..|.+.|.+|+++++|+|+||.+.|..|+|||+++...+.++.. ..+...+++|..| .||. +....|.||. .
T Consensus       286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~-~~G~~v~iw~d~  362 (545)
T KOG1272|consen  286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLAL-SYGDHVQIWKDA  362 (545)
T ss_pred             HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceee-ecCCeeeeehhh
Confidence            999999999999999999999999999999999999999887777665 4567788888665 3443 4445799993 3


Q ss_pred             CC--CeEEEEeeCC--CCCEEEEEEeCCCCEEEEEeCCCc
Q psy14440        616 SN--GHLLTLLTGH--TDVVRALCFSRDGNILASSGQDCS  651 (711)
Q Consensus       616 ~s--g~~i~~l~~h--~~~V~sl~fspdg~~Lasgs~Dg~  651 (711)
                      ..  +..-..+-.|  .+.|.++.|.|-..+|-.|-..|.
T Consensus       363 ~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~  402 (545)
T KOG1272|consen  363 LKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI  402 (545)
T ss_pred             hcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence            33  2222222233  358999999997766666655553

>KOG1517|consensus

Probab=99.68  E-value=3.4e-15  Score=168.06  Aligned_cols=286  Identities=20%  Similarity=0.262  Sum_probs=200.4

Q ss_pred             CCeEEEEeCCC-----CceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc---CCEEEEEEcC--CCCEEEE
Q psy14440        408 ESYIKLWSLVP-----QKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE---GPVRKLSFSP--DRSLLLS  477 (711)
Q Consensus       408 dg~I~vWdl~~-----~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~---~~V~~l~fsp--dg~~L~s  477 (711)
                      +..|..|+...     +.-+.++.++-...+++..+...|.+||...++....+..+.   ..|+.+.+-.  |..++++
T Consensus      1049 t~~i~~W~~~~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1049 TNPIGNWDQKFMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred             cccccchHHHHHhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheee
Confidence            34466776521     122334455555667777778899999999988877776553   4688888865  5568999


Q ss_pred             EeCCCeEEEEEC-----CCCeEEEEEecC-------CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEee-cCC
Q psy14440        478 CSQDNTIRLWSL-----LLWRCLVVYKGH-------GHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFV-GHY  544 (711)
Q Consensus       478 ~s~Dg~V~iwdl-----~t~~~~~~~~~h-------~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~-~h~  544 (711)
                      |+.||.||||+-     ...+.+..+.+-       .+.=.-+.|.....+++++|.-+.|+|||.+....+..+. +..
T Consensus      1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred             eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC
Confidence            999999999964     222333333221       1111346787766677777778999999999876666543 344


Q ss_pred             CCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCc---EEEEeeCCCCC--eEEEEEecCCCE-EEEEeCCCcEEEEECCC
Q psy14440        545 SDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGS---HVRLLTGHKAP--VYALSFSVCGRF-LASAGGDGNVHMWDLSN  617 (711)
Q Consensus       545 ~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~---~v~~~~~h~~~--I~~la~spdg~~-Lasgs~Dg~I~iwDl~s  617 (711)
                      ..|+++.-+- .|+.|++|..||.||+||.+...   .+...+.|+..  |..+.+.+.|-- |++|+.||.|++||++.
T Consensus      1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence            5566665433 57999999999999999998653   46777888877  999999887654 99999999999999987


Q ss_pred             CeE--EEEeeCCC--C-CEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccC
Q psy14440        618 GHL--LTLLTGHT--D-VVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTK  692 (711)
Q Consensus       618 g~~--i~~l~~h~--~-~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~  692 (711)
                      ...  ...+..|.  | .++++..+.+..++|+|+. +.|+||++....-..            ++     +--.-...+
T Consensus      1289 ~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~------------~k-----~n~~F~~q~ 1350 (1387)
T KOG1517|consen 1289 SSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNI------------IK-----YNPGFMGQR 1350 (1387)
T ss_pred             CcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcc------------cc-----cCcccccCc
Confidence            422  22233343  3 5899999999999999998 999999986421100            00     000112334


Q ss_pred             CcceEEEEEccCCeeee-CC
Q psy14440        693 ASPLLHLIFSRRNILLR-GP  711 (711)
Q Consensus       693 ~~pV~~v~Fs~~n~lla-Ga  711 (711)
                      ..++.+++|.|...+|| |.
T Consensus      1351 ~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1351 IGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred             CCCcceeeecchhHhhhhcc
Confidence            56779999999999998 74

>KOG0649|consensus

Probab=99.68  E-value=6e-15  Score=142.23  Aligned_cols=195  Identities=19%  Similarity=0.299  Sum_probs=152.0

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------CeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL----------WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA  530 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t----------~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd  530 (711)
                      ..|.+-+|+|.+++|++|+.+|+|.++++.+          ...+...++|.++|+.++|.  ..++++|+ ||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            3567778999999999999999999999842          23456668999999999998  34666666 59999986


Q ss_pred             CCCCce------e-------EEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecC
Q psy14440        531 TDSYHP------L-------RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVC  597 (711)
Q Consensus       531 ~~~~~~------~-------~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spd  597 (711)
                      -+....      +       +.=...--.|+++...|..+-+++++.|+.++-||+.+|+..++++||+..|.+++--..
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            543211      1       110112346889999998888888889999999999999999999999999999998555


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeeC---------CC-CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        598 GRFLASAGGDGNVHMWDLSNGHLLTLLTG---------HT-DVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       598 g~~Lasgs~Dg~I~iwDl~sg~~i~~l~~---------h~-~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      ...+.+|++||+++|||+++++.+..+..         |. ..|-+++-  +..+|++|+ .-.+.+|+++...
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse  238 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSE  238 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCC
Confidence            55788999999999999999999887742         22 23445544  566888776 4589999998744

>KOG1009|consensus

Probab=99.67  E-value=5.1e-16  Score=159.42  Aligned_cols=206  Identities=25%  Similarity=0.384  Sum_probs=157.0

Q ss_pred             CCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCc---------eeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEE
Q psy14440        502 GHPVWDIKFSPHGY-YFASAGHDRMARLWATDSYH---------PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLW  571 (711)
Q Consensus       502 ~~~V~~v~~sp~g~-~l~sgs~Dg~i~lwd~~~~~---------~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iw  571 (711)
                      ..+|.++.|..+.. .++||+.|..|++|-+....         .+..+..|...|++|.|+|+|+.||+|+++|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            45789999988665 99999999999999876432         234566899999999999999999999999999999


Q ss_pred             ECC--------C--------CcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEE
Q psy14440        572 DCV--------T--------GSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALC  635 (711)
Q Consensus       572 D~~--------~--------~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~  635 (711)
                      -..        +        ....+.+.+|...|+.++|++++.++++|+.|+.+++||+..|..+..+.+|...|..++
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva  172 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA  172 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence            755        2        233456778999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecc--cCCcceEEEEEccCCeeee
Q psy14440        636 FSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYK--TKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       636 fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--t~~~pV~~v~Fs~~n~lla  709 (711)
                      |.|.++++++-+.|...+++.+.............+  ............++.|.  |..+=...++||++|.+|.
T Consensus       173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m--~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv  246 (434)
T KOG1009|consen  173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIM--PAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV  246 (434)
T ss_pred             cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEe--eecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence            999999999999998777777654221111000000  00000011222222232  2233456789999999887

>KOG2394|consensus

Probab=99.67  E-value=2.5e-15  Score=158.88  Aligned_cols=254  Identities=19%  Similarity=0.294  Sum_probs=176.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----eeee---------------ccCccccccccccCCcEEEEEecC
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQK-----LKAM---------------KSSDQLQDIEMECDDILVRIMDER  448 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-----~~~~---------------~~~~~~~~l~~~~~d~~i~i~d~~  448 (711)
                      .++...++-.|+.|+.... ..+.+|++.+..     +...               ........+.++-.-|.++++|..
T Consensus       125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~  203 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI  203 (636)
T ss_pred             ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence            3455556666777765543 347888876421     1100               011223345556666777777755


Q ss_pred             CCeeEEEee----cccCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEE--cCCCCEEEEEE
Q psy14440        449 NAETTRTLV----GHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKF--SPHGYYFASAG  521 (711)
Q Consensus       449 ~~~~~~~l~----~h~~~V~~l~fspdg-~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~--sp~g~~l~sgs  521 (711)
                      ..+..+.+.    -.+..|+|+.|-+.+ ..++.+-.+|.+.+||..          +....+...|  .+++..|....
T Consensus       204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~~~~~t~p~~~~~k~~~~f~i~t  273 (636)
T KOG2394|consen  204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------IVCGATAPSYQALKDGDQFAILT  273 (636)
T ss_pred             hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc----------ccccCCCCcccccCCCCeeEEee
Confidence            433222121    124689999999844 456667789999999872          1111122222  23455554432


Q ss_pred             CCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEE
Q psy14440        522 HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFL  601 (711)
Q Consensus       522 ~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~L  601 (711)
                      .-.      ..+..++..+.--.+.|+.++|+|||++||+.+.||.+||||..+.+.+..++..-+...|++|||||+||
T Consensus       274 ~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyI  347 (636)
T KOG2394|consen  274 SKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYI  347 (636)
T ss_pred             eec------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEE
Confidence            111      11124444444445689999999999999999999999999999988888877777899999999999999


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeC-----------------------------------CC------
Q psy14440        602 ASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSR-----------------------------------DG------  640 (711)
Q Consensus       602 asgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fsp-----------------------------------dg------  640 (711)
                      ++|++|..|.||.+..++.+..-.+|.+.|+.++|.|                                   ++      
T Consensus       348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~  427 (636)
T KOG2394|consen  348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSF  427 (636)
T ss_pred             EecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccc
Confidence            9999999999999999999999999999999999982                                   11      


Q ss_pred             -------CEEEEEeCCCcEEEEeCCC
Q psy14440        641 -------NILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       641 -------~~Lasgs~Dg~V~iWdl~~  659 (711)
                             -.+.+.|.|-.+.+||+..
T Consensus       428 ~~~~~v~YRfGSVGqDTqlcLWDlte  453 (636)
T KOG2394|consen  428 NRINSVTYRFGSVGQDTQLCLWDLTE  453 (636)
T ss_pred             ccccceEEEeecccccceEEEEecch
Confidence                   2577888999999999874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.67  E-value=8.7e-14  Score=149.65  Aligned_cols=198  Identities=15%  Similarity=0.219  Sum_probs=139.3

Q ss_pred             cCCEEEEEEcCCCCEEEEEe-CCCeEEEEECC-CCeE--EEEEecCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCC
Q psy14440        460 EGPVRKLSFSPDRSLLLSCS-QDNTIRLWSLL-LWRC--LVVYKGHGHPVWDIKFSPHGYYFASAG-HDRMARLWATDSY  534 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s-~Dg~V~iwdl~-t~~~--~~~~~~h~~~V~~v~~sp~g~~l~sgs-~Dg~i~lwd~~~~  534 (711)
                      .+....++++|++++|++++ .++.|.+|++. ++..  +.... .......++|+|+++++++++ .++.|.+|++++.
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence            35567899999999987765 47889999996 3332  22222 233566899999999888877 4889999999742


Q ss_pred             ----ceeEEeecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEE-----ee-CCCCCeEEEEEecCCCEEEE
Q psy14440        535 ----HPLRLFVGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSHVRL-----LT-GHKAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       535 ----~~~~~~~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~v~~-----~~-~h~~~I~~la~spdg~~Las  603 (711)
                          ..+..+. +.....+++++|+++++++++ .++.|.+||+.+...+..     .. ........++|+|+|+++++
T Consensus       113 g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv  191 (330)
T PRK11028        113 GIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYC  191 (330)
T ss_pred             CCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEE
Confidence                2223222 334567889999999986655 569999999976432211     11 11234678999999999988


Q ss_pred             EeC-CCcEEEEECCC--Ce--EEEEeeCC------CCCEEEEEEeCCCCEEEEEeC-CCcEEEEeCCC
Q psy14440        604 AGG-DGNVHMWDLSN--GH--LLTLLTGH------TDVVRALCFSRDGNILASSGQ-DCSVKLWDFAK  659 (711)
Q Consensus       604 gs~-Dg~I~iwDl~s--g~--~i~~l~~h------~~~V~sl~fspdg~~Lasgs~-Dg~V~iWdl~~  659 (711)
                      ++. +++|.+||+..  ++  .+..+..+      ......+.|+|+|++|+++.. +++|.+|++..
T Consensus       192 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        192 VNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             EecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            876 89999999973  33  34444322      112346889999999988854 78999999964

>KOG1310|consensus

Probab=99.67  E-value=4.8e-16  Score=164.19  Aligned_cols=212  Identities=26%  Similarity=0.383  Sum_probs=162.8

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccC
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEG  461 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~  461 (711)
                      .+.||.+.|+|++|+.||.+||+|+.|-.+.|||....++.                              ...-.||.+
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll------------------------------hsI~TgHta   94 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL------------------------------HSISTGHTA   94 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhccee------------------------------eeeeccccc
Confidence            47899999999999999999999999999999998543321                              122358999


Q ss_pred             CEEEEEEcC--CCCEEEEEeCCCeEEEEECCC----------CeEEEEEecCCCCEEEEEEcCCC-CEEEEEECCCeEEE
Q psy14440        462 PVRKLSFSP--DRSLLLSCSQDNTIRLWSLLL----------WRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARL  528 (711)
Q Consensus       462 ~V~~l~fsp--dg~~L~s~s~Dg~V~iwdl~t----------~~~~~~~~~h~~~V~~v~~sp~g-~~l~sgs~Dg~i~l  528 (711)
                      .|.++.|-|  +++.+++|..|..|++||+..          .+....+..|...|..++-.|++ +.|.++++||+|+-
T Consensus        95 NIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQ  174 (758)
T KOG1310|consen   95 NIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQ  174 (758)
T ss_pred             ceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceee
Confidence            999999998  567899999999999999974          23456677899999999999988 89999999999999


Q ss_pred             EECCCCce----------eEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCC--------C----------cEE
Q psy14440        529 WATDSYHP----------LRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVT--------G----------SHV  579 (711)
Q Consensus       529 wd~~~~~~----------~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~--------~----------~~v  579 (711)
                      +|++....          +..+....-...|+..+| +..|||+|+.|-..++||.+.        +          .|+
T Consensus       175 yDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv  254 (758)
T KOG1310|consen  175 YDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCV  254 (758)
T ss_pred             ecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchh
Confidence            99986321          111222334567999999 567899999999999999431        1          134


Q ss_pred             EEee-CCC-----------CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q psy14440        580 RLLT-GHK-----------APVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTL  623 (711)
Q Consensus       580 ~~~~-~h~-----------~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~  623 (711)
                      +.|. +|-           ..++-++|+|+|.-|.+.-..-.|+++|+..++....
T Consensus       255 ~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  255 RYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             heecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence            4443 221           1255678999998776665556899999988775443

>KOG1445|consensus

Probab=99.66  E-value=1.4e-15  Score=162.60  Aligned_cols=193  Identities=22%  Similarity=0.373  Sum_probs=154.8

Q ss_pred             EcCCCCEEEE--EeCCCeEEEEECCCCeE-----EEEEecCCCCEEEEEEcC-CCCEEEEEECCCeEEEEECCCC-----
Q psy14440        468 FSPDRSLLLS--CSQDNTIRLWSLLLWRC-----LVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMARLWATDSY-----  534 (711)
Q Consensus       468 fspdg~~L~s--~s~Dg~V~iwdl~t~~~-----~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~~~~-----  534 (711)
                      |+.+..++++  ++.-|.|-||++..-..     +-.+. ....|+++.|.| |...+++++.||.|++|-+..+     
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~  665 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN  665 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence            3334555543  35568999999964221     22222 356799999999 6789999999999999987643     


Q ss_pred             --ceeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q psy14440        535 --HPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVH  611 (711)
Q Consensus       535 --~~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~  611 (711)
                        .+..++.+|...|+.+.||| -.+.|++++.|-+|++||+++++....+.+|.+.|..++|||||+.+|+.+.||+|+
T Consensus       666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r  745 (1012)
T KOG1445|consen  666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR  745 (1012)
T ss_pred             cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence              45678889999999999999 567899999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCe-EEEEeeCCC-CCEEEEEEeCCCCEEEEEeCCC----cEEEEeCCCCC
Q psy14440        612 MWDLSNGH-LLTLLTGHT-DVVRALCFSRDGNILASSGQDC----SVKLWDFAKLS  661 (711)
Q Consensus       612 iwDl~sg~-~i~~l~~h~-~~V~sl~fspdg~~Lasgs~Dg----~V~iWdl~~~~  661 (711)
                      +|+-++++ .+.+-++.. ..--.|.|..||+++++.|.|.    .|.+||..++.
T Consensus       746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence            99998865 344443322 2345688999999999988774    58899987765

>KOG2321|consensus

Probab=99.66  E-value=1.3e-14  Score=154.60  Aligned_cols=293  Identities=16%  Similarity=0.227  Sum_probs=207.1

Q ss_pred             HHHHHHHHHhccccccCCCCCCceEEEEEecCCCceEEEEECCCCCEE-EEEeCCCeEEEEeCCCCceeeeccC------
Q psy14440        355 IDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEISEDVSIL-AVGFSESYIKLWSLVPQKLKAMKSS------  427 (711)
Q Consensus       355 ~~~~~~~~~~~~r~~l~~~~lps~~~~tl~~h~~~V~~l~fs~dg~~L-atG~~dg~I~vWdl~~~~~~~~~~~------  427 (711)
                      .+.+++--+.+.||.+-++          +++....+.+..++||+|+ |+|..--.|++||+..-.++.-.+-      
T Consensus        29 kR~lkkd~~~~~rieLiQd----------fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~   98 (703)
T KOG2321|consen   29 KRQLKKDVDYRQRIELIQD----------FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVD   98 (703)
T ss_pred             HHHHhhchHHHHHHHHHHh----------cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccccccee
Confidence            3344444455566665443          5666778899999999975 6788888999999977655432221      


Q ss_pred             -----ccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q psy14440        428 -----DQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHG  502 (711)
Q Consensus       428 -----~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~  502 (711)
                           ++-...+.-..|..|.+... .|.....-.  ...-..++++.-..-|++++....|+-++++.|+.+..+....
T Consensus        99 feiLsDD~SK~v~L~~DR~IefHak-~G~hy~~RI--P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~  175 (703)
T KOG2321|consen   99 FEILSDDYSKSVFLQNDRTIEFHAK-YGRHYRTRI--PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS  175 (703)
T ss_pred             EEEeccchhhheEeecCceeeehhh-cCeeeeeec--CcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc
Confidence                 11111222222222222111 011000000  0112344454433345555555669999999999999999888


Q ss_pred             CCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeec------CCC-----CeeEEEEcCCCCEEEEEEcCCcEEEE
Q psy14440        503 HPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG------HYS-----DVDCVQFHPNSNYVATGSSDRTIRLW  571 (711)
Q Consensus       503 ~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~------h~~-----~V~~v~~sp~~~~latgs~Dg~I~iw  571 (711)
                      +.+++|..++...+|++|+.+|.|..||.++...+.++..      |.+     .|+++.|+.+|-.+++|+.+|.|.||
T Consensus       176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iy  255 (703)
T KOG2321|consen  176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIY  255 (703)
T ss_pred             ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEE
Confidence            9999999999888999999999999999998766655432      222     49999999999999999999999999


Q ss_pred             ECCCCcEEEEee-CCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC
Q psy14440        572 DCVTGSHVRLLT-GHKAPVYALSFSVC--GRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       572 D~~~~~~v~~~~-~h~~~I~~la~spd--g~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~  648 (711)
                      |+++.+.+..-. +...+|..+.|.+.  +..|+|. +...++|||-.+|+....+.. ...++.+|+-|++.++++|-.
T Consensus       256 DLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane  333 (703)
T KOG2321|consen  256 DLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANE  333 (703)
T ss_pred             EcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecC
Confidence            999988765543 34568899999765  4556655 346899999999999888874 445999999999999999999


Q ss_pred             CCcEEEEeCCCCCC
Q psy14440        649 DCSVKLWDFAKLSD  662 (711)
Q Consensus       649 Dg~V~iWdl~~~~~  662 (711)
                      ++.+..|=+..+..
T Consensus       334 ~~~m~~yyiP~LGP  347 (703)
T KOG2321|consen  334 SSKMHTYYIPSLGP  347 (703)
T ss_pred             CCcceeEEccccCC
Confidence            99999888876554

>KOG1272|consensus

Probab=99.65  E-value=1.8e-16  Score=164.84  Aligned_cols=220  Identities=18%  Similarity=0.304  Sum_probs=189.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEee
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFV  541 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~  541 (711)
                      .-+.+.++.+|++|+.|+..|.|..+|+.++.....+.. ...|.++.|-.+..+||++ ....++|||-.. ..+..+.
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G-tElHClk  207 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNNG-TELHCLK  207 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCCC-cEEeehh
Confidence            347899999999999999999999999999998887763 6678999998877777776 467899998764 3444444


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE
Q psy14440        542 GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLL  621 (711)
Q Consensus       542 ~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i  621 (711)
                      . ...|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-+|...|+|.+|...+.+.+
T Consensus       208 ~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL  286 (545)
T KOG1272|consen  208 R-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL  286 (545)
T ss_pred             h-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence            3 356889999999888999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             EEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEE
Q psy14440        622 TLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIF  701 (711)
Q Consensus       622 ~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~F  701 (711)
                      ..+-.|.++|.+|++.++|+++||+|.|..|+|||++.+..                       +.++.+ ..+...++|
T Consensus       287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q-----------------------l~t~~t-p~~a~~ls~  342 (545)
T KOG1272|consen  287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ-----------------------LHTYRT-PHPASNLSL  342 (545)
T ss_pred             HHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc-----------------------cceeec-CCCcccccc
Confidence            88999999999999999999999999999999999997542                       234554 567778888


Q ss_pred             ccCCeeee
Q psy14440        702 SRRNILLR  709 (711)
Q Consensus       702 s~~n~lla  709 (711)
                      |.+|++-+
T Consensus       343 SqkglLA~  350 (545)
T KOG1272|consen  343 SQKGLLAL  350 (545)
T ss_pred             ccccceee
Confidence            88887765

>KOG2110|consensus

Probab=99.65  E-value=3e-13  Score=137.92  Aligned_cols=231  Identities=16%  Similarity=0.233  Sum_probs=170.8

Q ss_pred             ccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec---C
Q psy14440        425 KSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG---H  501 (711)
Q Consensus       425 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~---h  501 (711)
                      .++..+-.++.......+++++......+..+. -..+|.++.++  .+.|+++-.+. |+|||+.+.+.+.++..   +
T Consensus        53 LFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n  128 (391)
T KOG2110|consen   53 LFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPN  128 (391)
T ss_pred             ecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCC
Confidence            333333333333334556777766666555544 34568888885  45788887765 99999999999887753   3


Q ss_pred             CCCEEEEEEcCCCCEEEEEE--CCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCc-EEEEECCCCcE
Q psy14440        502 GHPVWDIKFSPHGYYFASAG--HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRT-IRLWDCVTGSH  578 (711)
Q Consensus       502 ~~~V~~v~~sp~g~~l~sgs--~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~-I~iwD~~~~~~  578 (711)
                      ...+.++.++..+.|++.-+  ..|.|.+||+.+-+++..+..|.+.+-|++|+++|.+|||+|+.|+ ||||.+.+|+.
T Consensus       129 ~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k  208 (391)
T KOG2110|consen  129 PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK  208 (391)
T ss_pred             ccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE
Confidence            44566666666677888643  5689999999999999999999999999999999999999999998 69999999999


Q ss_pred             EEEeeCC--CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-------------------------------------
Q psy14440        579 VRLLTGH--KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGH-------------------------------------  619 (711)
Q Consensus       579 v~~~~~h--~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~-------------------------------------  619 (711)
                      +..|.-.  -..|.+++|++++.+|++.+..++|+||.+....                                     
T Consensus       209 l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R  288 (391)
T KOG2110|consen  209 LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSR  288 (391)
T ss_pred             eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhcc
Confidence            9998732  3568999999999999999999999999875311                                     


Q ss_pred             EEEEeeCCCCCE-EEEEEe--CCCCEEEEEeCCCcEEEEeCCC
Q psy14440        620 LLTLLTGHTDVV-RALCFS--RDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       620 ~i~~l~~h~~~V-~sl~fs--pdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      .....+...+.. ..+++.  .....+..++.||.+..|.+.-
T Consensus       289 ~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  289 KFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             ceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence            000111111111 223344  4677888999999999999875

>KOG2139|consensus

Probab=99.63  E-value=5.8e-14  Score=142.38  Aligned_cols=237  Identities=19%  Similarity=0.328  Sum_probs=168.8

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee-cccCCEEE
Q psy14440        387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV-GHEGPVRK  465 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~V~~  465 (711)
                      +-.+.-++|++.-..+|++..|-.|++|+-.....                                ..++ .....|+|
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p--------------------------------t~Lks~sQrnvtc  145 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP--------------------------------TKLKSVSQRNVTC  145 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC--------------------------------ceecchhhcceeE
Confidence            45688899999777888888898899988643211                                1111 12457999


Q ss_pred             EEEcCCC-CEEEEEeCCCeEEEEECCCC----eE----------EEEEecCCCCEEEEEEcCCCCEEEEEE-CCCeEEEE
Q psy14440        466 LSFSPDR-SLLLSCSQDNTIRLWSLLLW----RC----------LVVYKGHGHPVWDIKFSPHGYYFASAG-HDRMARLW  529 (711)
Q Consensus       466 l~fspdg-~~L~s~s~Dg~V~iwdl~t~----~~----------~~~~~~h~~~V~~v~~sp~g~~l~sgs-~Dg~i~lw  529 (711)
                      ++|-|.+ ..|++|+..| |.+|.....    ..          +....+| .+|+++.|.+||..+++++ .|..|+||
T Consensus       146 lawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iW  223 (445)
T KOG2139|consen  146 LAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIW  223 (445)
T ss_pred             EEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEE
Confidence            9999955 4677777765 999987421    11          1223344 6899999999999999988 57789999


Q ss_pred             ECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEE-CCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCC
Q psy14440        530 ATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWD-CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG  608 (711)
Q Consensus       530 d~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD-~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg  608 (711)
                      |.+++..+.......+.++-+.|+||+.+|++++-|+..++|. .++..+.+...+. +.|...+|+|+|++|..++. |
T Consensus       224 dpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs-grvqtacWspcGsfLLf~~s-g  301 (445)
T KOG2139|consen  224 DPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS-GRVQTACWSPCGSFLLFACS-G  301 (445)
T ss_pred             cCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC-CceeeeeecCCCCEEEEEEc-C
Confidence            9999887776655677899999999999999999999999994 4555556655543 48999999999998765543 2


Q ss_pred             cEEEEECCC----C--------e---EEEEe------eC---CCCCEEEEEEeCCCCEEEEEeCCC--------cEEEEe
Q psy14440        609 NVHMWDLSN----G--------H---LLTLL------TG---HTDVVRALCFSRDGNILASSGQDC--------SVKLWD  656 (711)
Q Consensus       609 ~I~iwDl~s----g--------~---~i~~l------~~---h~~~V~sl~fspdg~~Lasgs~Dg--------~V~iWd  656 (711)
                      .-++|.+..    +        +   ++..+      .+   -.+.+.+++|.|.|.+||+.-..+        .|.+||
T Consensus       302 sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fd  381 (445)
T KOG2139|consen  302 SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFD  381 (445)
T ss_pred             CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhc
Confidence            334443321    0        0   11111      11   136789999999999999865433        366777


Q ss_pred             CCC
Q psy14440        657 FAK  659 (711)
Q Consensus       657 l~~  659 (711)
                      ..+
T Consensus       382 tr~  384 (445)
T KOG2139|consen  382 TRK  384 (445)
T ss_pred             ccc
Confidence            665

>KOG1310|consensus

Probab=99.63  E-value=2.4e-15  Score=158.96  Aligned_cols=213  Identities=24%  Similarity=0.349  Sum_probs=165.7

Q ss_pred             eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCEEEEEEcC--CCCEEEEEECCCeEEE
Q psy14440        452 TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY-KGHGHPVWDIKFSP--HGYYFASAGHDRMARL  528 (711)
Q Consensus       452 ~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~-~~h~~~V~~v~~sp--~g~~l~sgs~Dg~i~l  528 (711)
                      ....|.||+|.|.|+.|+.+|.+|++||.|-.+.|||....+.+..+ .+|...|.+++|-|  +...+++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            34578899999999999999999999999999999999887777766 58999999999999  4568999999999999


Q ss_pred             EECCC----------CceeEEeecCCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcE-------E---EEeeCCCC
Q psy14440        529 WATDS----------YHPLRLFVGHYSDVDCVQFHPNS-NYVATGSSDRTIRLWDCVTGSH-------V---RLLTGHKA  587 (711)
Q Consensus       529 wd~~~----------~~~~~~~~~h~~~V~~v~~sp~~-~~latgs~Dg~I~iwD~~~~~~-------v---~~~~~h~~  587 (711)
                      +|++.          ....+.+..|...|..++..|++ +.+.+++.||+|+-+|++....       .   ..+...--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            99984          34566677899999999999988 8899999999999999986321       1   11122234


Q ss_pred             CeEEEEEecC-CCEEEEEeCCCcEEEEECCC--------Ce----------EEEEe-eCCC-----------CCEEEEEE
Q psy14440        588 PVYALSFSVC-GRFLASAGGDGNVHMWDLSN--------GH----------LLTLL-TGHT-----------DVVRALCF  636 (711)
Q Consensus       588 ~I~~la~spd-g~~Lasgs~Dg~I~iwDl~s--------g~----------~i~~l-~~h~-----------~~V~sl~f  636 (711)
                      ...|+.++|. ..+|++|+.|-..++||.+.        |.          ++.-+ .+|.           ..++.+.|
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf  281 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF  281 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence            5678899985 56899999999999999431        11          12222 1222           12567889


Q ss_pred             eCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q psy14440        637 SRDGNILASSGQDCSVKLWDFAKLSDEV  664 (711)
Q Consensus       637 spdg~~Lasgs~Dg~V~iWdl~~~~~~~  664 (711)
                      +|+|.-|+..-..-.|+++|+...+...
T Consensus       282 npNGtElLvs~~gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  282 NPNGTELLVSWGGEHVYLFDVNEDKSPT  309 (758)
T ss_pred             CCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence            9999865554445589999998766544

>KOG4497|consensus

Probab=99.63  E-value=1.8e-13  Score=137.23  Aligned_cols=263  Identities=17%  Similarity=0.220  Sum_probs=185.3

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCcee----------eeccCcccc-ccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        392 CAEISEDVSILAVGFSESYIKLWSLVPQKLK----------AMKSSDQLQ-DIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       392 ~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~----------~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      -+.|||+|+++|+.+.- .+.|-|..+-++.          .+....+.. .+.....++.|.+|+....+-...+....
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~   91 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ   91 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence            45799999999999765 6778787664432          233333333 34455678899999999888888888888


Q ss_pred             CCEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEEC-----------------
Q psy14440        461 GPVRKLSFSPDRSLLL-SCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH-----------------  522 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~-s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~-----------------  522 (711)
                      .++.+++|||||+.|+ +...|-.|.+|++.+.++...- -....+..++|+++|++.+.+++                 
T Consensus        92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l  170 (447)
T KOG4497|consen   92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL  170 (447)
T ss_pred             CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence            9999999999997554 5566889999999877654432 22445678899999988777653                 


Q ss_pred             -------------------CCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE---
Q psy14440        523 -------------------DRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR---  580 (711)
Q Consensus       523 -------------------Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~---  580 (711)
                                         +..+.+||.--...+..+ .-.-.+..++|+|-+++|++|+.|+.+||.+--+.+.+.   
T Consensus       171 l~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~efl  249 (447)
T KOG4497|consen  171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFL  249 (447)
T ss_pred             HHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhc
Confidence                               123444443211111111 122468899999999999999999999885532211100   


Q ss_pred             ---------------------------------------------------------Eee------CCCCCeEEEEEecC
Q psy14440        581 ---------------------------------------------------------LLT------GHKAPVYALSFSVC  597 (711)
Q Consensus       581 ---------------------------------------------------------~~~------~h~~~I~~la~spd  597 (711)
                                                                               .++      .....+.-++||+|
T Consensus       250 hl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D  329 (447)
T KOG4497|consen  250 HLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD  329 (447)
T ss_pred             cchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC
Confidence                                                                     000      11335677999999


Q ss_pred             CCEEEEEeCC--CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        598 GRFLASAGGD--GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       598 g~~Lasgs~D--g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      ..|+++-.+.  +.+-+||+++.+....+. ...+|....|.|....|+.+.....+++|...
T Consensus       330 s~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~ps  391 (447)
T KOG4497|consen  330 STYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS  391 (447)
T ss_pred             ceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence            9999887543  579999998877655554 45679999999988888888877789999865

>KOG1240|consensus

Probab=99.63  E-value=6.7e-14  Score=160.15  Aligned_cols=262  Identities=17%  Similarity=0.213  Sum_probs=188.3

Q ss_pred             eEEEEEecCCCceEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        378 IACYTLLNARQQVTCAEISEDV-SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg-~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      +.+-.++.|...|..++.+++. .++++|+.||+||+|++......                        ..+.....++
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~------------------------~~s~rS~lty 1094 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE------------------------GGSARSELTY 1094 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC------------------------cceeeeeEEE
Confidence            4566788999999999988766 99999999999999998431100                        0111222333


Q ss_pred             ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------eEEEEEecC-CCCEE-EEEEcC-CC-CEEEEEECCCe
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW-------RCLVVYKGH-GHPVW-DIKFSP-HG-YYFASAGHDRM  525 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~-------~~~~~~~~h-~~~V~-~v~~sp-~g-~~l~sgs~Dg~  525 (711)
                      .-..+.+.++.....+..+|+++.||.|++.+++..       .+......+ .+.+. .-+|.. .+ ..++.+..-+.
T Consensus      1095 s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1095 SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR 1174 (1431)
T ss_pred             eccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccc
Confidence            335678999999999999999999999999998752       112222222 22233 333433 22 37888888999


Q ss_pred             EEEEECCCCceeEEee--cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee-CCCCCeEEEEEecCC---C
Q psy14440        526 ARLWATDSYHPLRLFV--GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT-GHKAPVYALSFSVCG---R  599 (711)
Q Consensus       526 i~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~-~h~~~I~~la~spdg---~  599 (711)
                      |..||+++......++  ...+.|++++.+|-++++++|+..|.+.+||++-+..+.... .+..+|+.++.++-.   .
T Consensus      1175 iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1175 IVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQES 1254 (1431)
T ss_pred             eEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCc
Confidence            9999998766554443  345789999999999999999999999999999998888765 466888888887643   3


Q ss_pred             EEEEEe--CCCcEEEEECCCCeEEEEeeCC-------------------CCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        600 FLASAG--GDGNVHMWDLSNGHLLTLLTGH-------------------TDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       600 ~Lasgs--~Dg~I~iwDl~sg~~i~~l~~h-------------------~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      +.++++  ..+.|.+|++.+|.+-..+...                   .-.....++..-+.++.+||.|+.||.||..
T Consensus      1255 ~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1255 VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence            555544  4678999999998766555432                   1112233444456689999999999999998


Q ss_pred             CCCCc
Q psy14440        659 KLSDE  663 (711)
Q Consensus       659 ~~~~~  663 (711)
                      .....
T Consensus      1335 ~p~~s 1339 (1431)
T KOG1240|consen 1335 RPEIS 1339 (1431)
T ss_pred             Ccccc
Confidence            76544

>KOG0322|consensus

Probab=99.62  E-value=8.2e-15  Score=142.96  Aligned_cols=233  Identities=20%  Similarity=0.312  Sum_probs=176.1

Q ss_pred             eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q psy14440        452 TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK-GHGHPVWDIKFSPHGYYFASAGHDRMARLWA  530 (711)
Q Consensus       452 ~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~-~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd  530 (711)
                      ....+++|.+.|+++.|..+++ |++|..-|.|.+|++.+.+....++ .|...|+.+..-|+ ..+.+-+.|+.+.+|+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT   83 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence            3556779999999999987775 9999999999999999998888888 56778888888886 5788889999999998


Q ss_pred             CCCCceeEE-------------------------ee----------------------------cCCCCeeEEEEcC-CC
Q psy14440        531 TDSYHPLRL-------------------------FV----------------------------GHYSDVDCVQFHP-NS  556 (711)
Q Consensus       531 ~~~~~~~~~-------------------------~~----------------------------~h~~~V~~v~~sp-~~  556 (711)
                      +.-...+.+                         ..                            +..+.+.|..+.- .+
T Consensus        84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~  163 (323)
T KOG0322|consen   84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG  163 (323)
T ss_pred             ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence            865211100                         00                            1123355555422 23


Q ss_pred             C--EEEEEEcCCcEEEEECCCCcEE----------EEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--eE--
Q psy14440        557 N--YVATGSSDRTIRLWDCVTGSHV----------RLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNG--HL--  620 (711)
Q Consensus       557 ~--~latgs~Dg~I~iwD~~~~~~v----------~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg--~~--  620 (711)
                      .  ++++|-.+|.|.+||+.++..+          .....|..+|.++.+.+.-..=++|+.+..+..|.+...  .+  
T Consensus       164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI  243 (323)
T ss_pred             ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence            3  3667888999999999998433          334468999999999876555578888889999987643  22  


Q ss_pred             EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEE
Q psy14440        621 LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLI  700 (711)
Q Consensus       621 i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~  700 (711)
                      -..+.-.+-.|..+..-+|++++||+|.||.||||+.+++                       ..++.++-|+..|++|+
T Consensus       244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-----------------------~pLAVLkyHsagvn~vA  300 (323)
T KOG0322|consen  244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-----------------------NPLAVLKYHSAGVNAVA  300 (323)
T ss_pred             cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-----------------------CchhhhhhhhcceeEEE
Confidence            1222223345888999999999999999999999998864                       34566778889999999


Q ss_pred             EccCCeeee
Q psy14440        701 FSRRNILLR  709 (711)
Q Consensus       701 Fs~~n~lla  709 (711)
                      |+++..++|
T Consensus       301 fspd~~lmA  309 (323)
T KOG0322|consen  301 FSPDCELMA  309 (323)
T ss_pred             eCCCCchhh
Confidence            999977777

>KOG1963|consensus

Probab=99.62  E-value=1.3e-13  Score=154.03  Aligned_cols=242  Identities=25%  Similarity=0.397  Sum_probs=179.2

Q ss_pred             cCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEE
Q psy14440        385 NARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVR  464 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~  464 (711)
                      |.+.--....||+|+++++..+. ..|+||..                               .++..++.+.+|..+++
T Consensus        14 g~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~-------------------------------~Tg~~i~~l~~~~a~l~   61 (792)
T KOG1963|consen   14 GRNGNKSPAVFSNDAKFLFLCTG-NFVKVYST-------------------------------ATGECITSLEDHTAPLT   61 (792)
T ss_pred             cccceecccccccCCcEEEEeeC-CEEEEEec-------------------------------chHhhhhhcccccCccc
Confidence            33333445678999998877654 45888876                               45666778889999999


Q ss_pred             EEEEcCCC---CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEE-----------------------------------
Q psy14440        465 KLSFSPDR---SLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVW-----------------------------------  506 (711)
Q Consensus       465 ~l~fspdg---~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~-----------------------------------  506 (711)
                      ++.+.+..   .++++++.||+|++||...+..+.++..+. ++.                                   
T Consensus        62 s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q  140 (792)
T KOG1963|consen   62 SVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQ  140 (792)
T ss_pred             eeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccc
Confidence            99998754   478899999999999998777766554221 111                                   


Q ss_pred             ------------------------EEEEcCCCCEEEEEECCCeEEEEECCCCceeE----EeecCCCCeeEEEEcCCCCE
Q psy14440        507 ------------------------DIKFSPHGYYFASAGHDRMARLWATDSYHPLR----LFVGHYSDVDCVQFHPNSNY  558 (711)
Q Consensus       507 ------------------------~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~----~~~~h~~~V~~v~~sp~~~~  558 (711)
                                              ++.+++.|.+. ....+..+.+|.........    .-..|...++|+++||++++
T Consensus       141 ~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~-~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~  219 (792)
T KOG1963|consen  141 SSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFK-GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERY  219 (792)
T ss_pred             eeeeEeeeccccchhhhhhhcCCccEEEcCCceEE-EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccce
Confidence                                    12222222222 22234456666665533110    11136666899999999999


Q ss_pred             EEEEEcCCcEEEEECCC----CcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEE
Q psy14440        559 VATGSSDRTIRLWDCVT----GSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRAL  634 (711)
Q Consensus       559 latgs~Dg~I~iwD~~~----~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl  634 (711)
                      +|+|..||.|.+|.--.    ....+.+..|...|++++|+++|.+|.+||..|.+.+|.+.+++ -+-+..-.+.|..+
T Consensus       220 ~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i  298 (792)
T KOG1963|consen  220 LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHI  298 (792)
T ss_pred             EEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEE
Confidence            99999999999996432    12356788899999999999999999999999999999999988 44455567899999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        635 CFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       635 ~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      .+|+|+.+.+....|+.|.+-....+.
T Consensus       299 ~vS~ds~~~sl~~~DNqI~li~~~dl~  325 (792)
T KOG1963|consen  299 VVSPDSDLYSLVLEDNQIHLIKASDLE  325 (792)
T ss_pred             EEcCCCCeEEEEecCceEEEEeccchh
Confidence            999999999999999999999886543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=2.4e-13  Score=151.34  Aligned_cols=212  Identities=17%  Similarity=0.121  Sum_probs=149.5

Q ss_pred             EEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEE
Q psy14440        441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQ---DNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYF  517 (711)
Q Consensus       441 ~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~---Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l  517 (711)
                      .+.++|.... ..+.+..+...+.+.+|||||+.|+..+.   +..|.+|++.+++..... .....+..+.|+|+|+.+
T Consensus       180 ~l~~~d~dg~-~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        180 ELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eEEEEcCCCC-CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEE
Confidence            5777776544 33455567778999999999999886543   457999999887644322 223334568999999988


Q ss_pred             EEE-ECCC--eEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCcEEEEeeCCCCCeEE
Q psy14440        518 ASA-GHDR--MARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD-R--TIRLWDCVTGSHVRLLTGHKAPVYA  591 (711)
Q Consensus       518 ~sg-s~Dg--~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D-g--~I~iwD~~~~~~v~~~~~h~~~I~~  591 (711)
                      +.. +.+|  .|++||+++++..+.. .+...+....|+|+|+.|+.++.+ +  .|.++|+.+++.. .+..+.....+
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~  335 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD  335 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccC
Confidence            765 4444  5888999887765544 344567899999999999887754 3  4555577776543 44444455678


Q ss_pred             EEEecCCCEEEEEeCC---CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCc---EEEEeCC
Q psy14440        592 LSFSVCGRFLASAGGD---GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCS---VKLWDFA  658 (711)
Q Consensus       592 la~spdg~~Lasgs~D---g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~---V~iWdl~  658 (711)
                      .+|+|||++|+..+.+   ..|.+||+.+++... +... ....+.+|+|||++|+.++.++.   +.+|++.
T Consensus       336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             EEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence            8999999999876543   358899998887543 3321 22356789999999999998875   5666654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=1.8e-13  Score=152.26  Aligned_cols=219  Identities=17%  Similarity=0.121  Sum_probs=152.8

Q ss_pred             EecCCCceEEEEECCCCCEEEEEeC---CCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        383 LLNARQQVTCAEISEDVSILAVGFS---ESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~LatG~~---dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      +..+...+.+.+|||||+.||..+.   +..|.+|++.+++..                                .+...
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~--------------------------------~l~~~  241 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--------------------------------QVASF  241 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE--------------------------------EccCC
Confidence            4455667889999999998886542   345667766443211                                11122


Q ss_pred             cCCEEEEEEcCCCCEEEEE-eCCC--eEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC-C--eEEEEECCC
Q psy14440        460 EGPVRKLSFSPDRSLLLSC-SQDN--TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD-R--MARLWATDS  533 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~-s~Dg--~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D-g--~i~lwd~~~  533 (711)
                      .+.+.+++|+|||+.|+.. +.+|  .|++||+.+++...... +...+....|+|+|+.|+.++.+ +  .|+++++.+
T Consensus       242 ~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~  320 (429)
T PRK03629        242 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING  320 (429)
T ss_pred             CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence            2334568999999988765 4444  58999998877655443 44567889999999988877754 4  455557776


Q ss_pred             CceeEEeecCCCCeeEEEEcCCCCEEEEEEcC---CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCc-
Q psy14440        534 YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD---RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGN-  609 (711)
Q Consensus       534 ~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D---g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~-  609 (711)
                      +...+ +..+.....+.+|+|+|++|+..+.+   ..|.+||+.++... .+... .......|+|||++|+.++.++. 
T Consensus       321 g~~~~-lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~  397 (429)
T PRK03629        321 GAPQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMG  397 (429)
T ss_pred             CCeEE-eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCc
Confidence            65433 33344556789999999999887643   35889999888754 33322 23456789999999999887764 


Q ss_pred             --EEEEECCCCeEEEEeeCCCCCEEEEEEeC
Q psy14440        610 --VHMWDLSNGHLLTLLTGHTDVVRALCFSR  638 (711)
Q Consensus       610 --I~iwDl~sg~~i~~l~~h~~~V~sl~fsp  638 (711)
                        +.++++ +|+....+.+|.+.+...+|+|
T Consensus       398 ~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        398 SVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             eEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence              677787 5666777888888899999986

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=2.9e-13  Score=151.03  Aligned_cols=213  Identities=19%  Similarity=0.181  Sum_probs=152.1

Q ss_pred             cEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCE
Q psy14440        440 ILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQD---NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYY  516 (711)
Q Consensus       440 ~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~D---g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~  516 (711)
                      ..|.+||.. +...+.+..|...+.+.+|+|||+.|+.++.+   ..|++||+.+++.... ..+.+...++.|+|+|+.
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCE
Confidence            357888864 44456677778889999999999999987743   4699999988765433 233445567899999987


Q ss_pred             EE-EEECCC--eEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEc-CCc--EEEEECCCCcEEEEeeCCCCCeE
Q psy14440        517 FA-SAGHDR--MARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS-DRT--IRLWDCVTGSHVRLLTGHKAPVY  590 (711)
Q Consensus       517 l~-sgs~Dg--~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~-Dg~--I~iwD~~~~~~v~~~~~h~~~I~  590 (711)
                      ++ +.+.+|  .|++||+.+++.. .+..+.......+|+|+|++|+.++. +|.  |.++|+.+++..+.. .+.....
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~  339 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNA  339 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCcc
Confidence            75 445555  5999999887644 44555555678899999999988774 344  777787777654433 2334455


Q ss_pred             EEEEecCCCEEEEEeCCC---cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC---CcEEEEeCC
Q psy14440        591 ALSFSVCGRFLASAGGDG---NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQD---CSVKLWDFA  658 (711)
Q Consensus       591 ~la~spdg~~Lasgs~Dg---~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D---g~V~iWdl~  658 (711)
                      ..+|||||++|+..+.++   .|.+||+.+++.. .+. +.....+.+|++||++|+..+.+   +.|.+|++.
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            789999999998765443   6999999888765 333 22345578999999988776653   346666664

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=8e-13  Score=147.64  Aligned_cols=213  Identities=15%  Similarity=0.110  Sum_probs=152.6

Q ss_pred             EEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEE
Q psy14440        441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQ---DNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYF  517 (711)
Q Consensus       441 ~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~---Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l  517 (711)
                      .|.++|. .+...+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+.+.+.+.+|+|+|+.+
T Consensus       183 ~l~~~d~-dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        183 RLAIMDQ-DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             EEEEECC-CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence            4556664 34445667778889999999999999888764   468999999887654 344456677889999999877


Q ss_pred             E-EEECCCe--EEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEc-C--CcEEEEECCCCcEEEEeeCCCCCeEE
Q psy14440        518 A-SAGHDRM--ARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS-D--RTIRLWDCVTGSHVRLLTGHKAPVYA  591 (711)
Q Consensus       518 ~-sgs~Dg~--i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~-D--g~I~iwD~~~~~~v~~~~~h~~~I~~  591 (711)
                      + +.+.++.  |++||++++.. +.+..+.......+|+|+|++|+..+. +  ..|++||+.++...+ +..+.+.+..
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~  338 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYST  338 (435)
T ss_pred             EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccC
Confidence            5 4555555  77778887765 445556666778999999999988774 3  368888987766544 4334556777


Q ss_pred             EEEecCCCEEEEEeCC---CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC------CcEEEEeCCC
Q psy14440        592 LSFSVCGRFLASAGGD---GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQD------CSVKLWDFAK  659 (711)
Q Consensus       592 la~spdg~~Lasgs~D---g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D------g~V~iWdl~~  659 (711)
                      ..|+|||++|+..+.+   ..|.+||+.++.. ..+. ....+.+++|+|||++|+..+.+      ..|.++|+..
T Consensus       339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG  413 (435)
T ss_pred             eEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence            8999999999877643   3688899865543 3332 22346788999999988776543      2466667643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=3.6e-13  Score=150.28  Aligned_cols=221  Identities=21%  Similarity=0.124  Sum_probs=153.4

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCC---CeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSE---SYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~d---g~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      ..+..+...+.+.+|+|||+.||.++.+   ..|.+|++.+++.                                ..+.
T Consensus       197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--------------------------------~~l~  244 (433)
T PRK04922        197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--------------------------------ELVA  244 (433)
T ss_pred             eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--------------------------------EEec
Confidence            4456677789999999999999887643   3577777654321                                1222


Q ss_pred             cccCCEEEEEEcCCCCEEE-EEeCCC--eEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEEC-CCe--EEEEEC
Q psy14440        458 GHEGPVRKLSFSPDRSLLL-SCSQDN--TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH-DRM--ARLWAT  531 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~-s~s~Dg--~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~-Dg~--i~lwd~  531 (711)
                      .+.+...+.+|+|||+.|+ +.+.+|  .|++||+.+++... +..+.......+|+|+|++|+.++. +|.  ++++++
T Consensus       245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl  323 (433)
T PRK04922        245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA  323 (433)
T ss_pred             cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            2334456789999999775 445555  59999998877543 4445555677899999998887764 444  666777


Q ss_pred             CCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC-
Q psy14440        532 DSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR---TIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD-  607 (711)
Q Consensus       532 ~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg---~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D-  607 (711)
                      .+++..+.. .+......++|+|+|++|+..+.++   .|.+||+.+++.. .+. +.......+|++||++|+..+.+ 
T Consensus       324 ~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~  400 (433)
T PRK04922        324 SGGSAERLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREG  400 (433)
T ss_pred             CCCCeEEee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecC
Confidence            776644432 2334455789999999998876443   6999999888755 333 22345567999999988876653 


Q ss_pred             --CcEEEEECCCCeEEEEeeCCCCCEEEEEEeC
Q psy14440        608 --GNVHMWDLSNGHLLTLLTGHTDVVRALCFSR  638 (711)
Q Consensus       608 --g~I~iwDl~sg~~i~~l~~h~~~V~sl~fsp  638 (711)
                        +.|.++|+. |.....+..+.+.+...+|+|
T Consensus       401 g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        401 GRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence              468888884 555666666667778888876

>KOG1354|consensus

Probab=99.57  E-value=1.8e-13  Score=137.96  Aligned_cols=249  Identities=21%  Similarity=0.273  Sum_probs=175.8

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc-------
Q psy14440        387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH-------  459 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h-------  459 (711)
                      .+-|.++.|..+|.+||+|..+|.|.++.-+...-                  +..        .....+..|       
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------------~ey--------~~~t~fqshepEFDYL   78 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------------GEY--------NFQTEFQSHEPEFDYL   78 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccc------------------cce--------eeeeeeeccCcccchh
Confidence            35689999999999999999999999997542210                  000        011112222       


Q ss_pred             -----cCCEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCe-----------------------------------EEEE
Q psy14440        460 -----EGPVRKLSFSPDRS--LLLSCSQDNTIRLWSLLLWR-----------------------------------CLVV  497 (711)
Q Consensus       460 -----~~~V~~l~fspdg~--~L~s~s~Dg~V~iwdl~t~~-----------------------------------~~~~  497 (711)
                           ...|..+.|..+++  .++..+.|.+|++|.+....                                   +.+.
T Consensus        79 kSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv  158 (433)
T KOG1354|consen   79 KSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRV  158 (433)
T ss_pred             hhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeee
Confidence                 34688899988665  56777789999999873211                                   1112


Q ss_pred             E-ecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEE---eecC-----CCCeeEEEEcC-CCCEEEEEEcCCc
Q psy14440        498 Y-KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL---FVGH-----YSDVDCVQFHP-NSNYVATGSSDRT  567 (711)
Q Consensus       498 ~-~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~---~~~h-----~~~V~~v~~sp-~~~~latgs~Dg~  567 (711)
                      + .+|..-|.++.++.|+..++++. |-.|.+|+++-......   ++.+     ..-|++..||| ..+.++..++.|+
T Consensus       159 ~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt  237 (433)
T KOG1354|consen  159 YANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT  237 (433)
T ss_pred             ccccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence            2 35788899999999998888874 78899999874322221   2222     23478899999 5678888999999


Q ss_pred             EEEEECCCCcE----EEE------------eeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC-CCCeEEEEeeCCC--
Q psy14440        568 IRLWDCVTGSH----VRL------------LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL-SNGHLLTLLTGHT--  628 (711)
Q Consensus       568 I~iwD~~~~~~----v~~------------~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl-~sg~~i~~l~~h~--  628 (711)
                      |++.|++....    .+.            |..--..|..+.|+.+|+||++-+. -+|++||+ ...+.+.++.-|.  
T Consensus       238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~l  316 (433)
T KOG1354|consen  238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYL  316 (433)
T ss_pred             EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhH
Confidence            99999984321    111            2223457889999999999998765 58999999 4556666665553  


Q ss_pred             ----------CC---EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCc
Q psy14440        629 ----------DV---VRALCFSRDGNILASSGQDCSVKLWDFAKLSDE  663 (711)
Q Consensus       629 ----------~~---V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~  663 (711)
                                ..   -..++|+-++.+++|||..+.++++++......
T Consensus       317 r~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~  364 (433)
T KOG1354|consen  317 RSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE  364 (433)
T ss_pred             HHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence                      12   246789999999999999999999997665543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=4.3e-13  Score=149.33  Aligned_cols=205  Identities=19%  Similarity=0.219  Sum_probs=143.4

Q ss_pred             cEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCE
Q psy14440        440 ILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQD---NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYY  516 (711)
Q Consensus       440 ~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~D---g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~  516 (711)
                      ..+.++|. .+...+.+..+...+.+.+|+|||+.|+.++.+   ..|.+||+.+++.... ....+.+.+..|+|+|+.
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence            45666775 445555666788899999999999999887643   4599999998876543 323445668999999988


Q ss_pred             EE-EEECCCeEEEEE--CCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEc-CCcEEEE--ECCCCcEEEEeeCCCCCeE
Q psy14440        517 FA-SAGHDRMARLWA--TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS-DRTIRLW--DCVTGSHVRLLTGHKAPVY  590 (711)
Q Consensus       517 l~-sgs~Dg~i~lwd--~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~-Dg~I~iw--D~~~~~~v~~~~~h~~~I~  590 (711)
                      ++ +.+.+|...+|.  ..++. .+.+..+...+....|+|||++|+..+. +|...||  |+.+++..+. ..+.....
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~  331 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNT  331 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcC
Confidence            86 456788766665  44444 4455555556677899999999887664 4555565  4455543333 22333345


Q ss_pred             EEEEecCCCEEEEEeCCC---cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCC
Q psy14440        591 ALSFSVCGRFLASAGGDG---NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDC  650 (711)
Q Consensus       591 ~la~spdg~~Lasgs~Dg---~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg  650 (711)
                      ..+|||||++|+.++.++   .|.+||+.+++......+  ....+.+|+|||++|+.++.++
T Consensus       332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecC
Confidence            688999999998776554   699999988875433222  2346789999999888877654

>KOG3881|consensus

Probab=99.57  E-value=3.2e-13  Score=138.59  Aligned_cols=200  Identities=19%  Similarity=0.305  Sum_probs=160.4

Q ss_pred             ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----EEEEEecCCCCEEEEEEcCCC-CEEEEEECC--CeEEEE
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR----CLVVYKGHGHPVWDIKFSPHG-YYFASAGHD--RMARLW  529 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~----~~~~~~~h~~~V~~v~~sp~g-~~l~sgs~D--g~i~lw  529 (711)
                      ...+++|.+++..  ...|++|-.+|.+.+|....+.    .+..+.. ...+..+.-++.. .++++||..  ..+.+|
T Consensus       102 ~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiw  178 (412)
T KOG3881|consen  102 SLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIW  178 (412)
T ss_pred             ccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeee
Confidence            3456677777764  3378888999999999987433    2233332 3456666666643 466679888  889999


Q ss_pred             ECCCCceeEEeecC---------CCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCC-cEEEEeeCCCCCeEEEEEecC
Q psy14440        530 ATDSYHPLRLFVGH---------YSDVDCVQFHPN--SNYVATGSSDRTIRLWDCVTG-SHVRLLTGHKAPVYALSFSVC  597 (711)
Q Consensus       530 d~~~~~~~~~~~~h---------~~~V~~v~~sp~--~~~latgs~Dg~I~iwD~~~~-~~v~~~~~h~~~I~~la~spd  597 (711)
                      |++..+.+..-..-         .-.++.+.|-+.  ...||+++.-+.||+||.+.+ +.+..|.-...+++++...|+
T Consensus       179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~  258 (412)
T KOG3881|consen  179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS  258 (412)
T ss_pred             ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCC
Confidence            99987544432221         124678888886  788999999999999999876 567888878899999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEE-eeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        598 GRFLASAGGDGNVHMWDLSNGHLLTL-LTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       598 g~~Lasgs~Dg~I~iwDl~sg~~i~~-l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      |++|++|..-|.+..||++.++.+.. +.+-.+.|++|..++.+.+|++||-|..|||+|+.+
T Consensus       259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            99999999999999999999998877 888999999999999999999999999999999987

>KOG4227|consensus

Probab=99.56  E-value=3.4e-13  Score=137.53  Aligned_cols=246  Identities=18%  Similarity=0.270  Sum_probs=183.3

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCE
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV  463 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V  463 (711)
                      +.|...|.|++|.-.+++|.+|..+++|.+.|+++....                    +++..         ....+.|
T Consensus       102 ~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi--------------------~V~~~---------~~~~~~V  152 (609)
T KOG4227|consen  102 HPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI--------------------YVANE---------NNNRGDV  152 (609)
T ss_pred             CccccceEEEEEccCCeeEecCCCcceeEeeecccceee--------------------eeecc---------cCcccce
Confidence            557789999999999999999999999999998754321                    11111         1235689


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCe---EEEEEecCCCCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCce-eE
Q psy14440        464 RKLSFSPDRSLLLSCSQDNTIRLWSLLLWR---CLVVYKGHGHPVWDIKFSPH-GYYFASAGHDRMARLWATDSYHP-LR  538 (711)
Q Consensus       464 ~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~---~~~~~~~h~~~V~~v~~sp~-g~~l~sgs~Dg~i~lwd~~~~~~-~~  538 (711)
                      +.+..+|-.+.|++.+.+|.|.+||.+...   ..............+.|+|. -.+|++.+..+-+.+||.+.... +.
T Consensus       153 Y~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~  232 (609)
T KOG4227|consen  153 YHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY  232 (609)
T ss_pred             eecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH
Confidence            999999999999999999999999997544   12223334556788999994 46888999999999999985431 11


Q ss_pred             ---EeecC---CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCC-------CCeEEEEEecCCCEEEEEe
Q psy14440        539 ---LFVGH---YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHK-------APVYALSFSVCGRFLASAG  605 (711)
Q Consensus       539 ---~~~~h---~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~-------~~I~~la~spdg~~Lasgs  605 (711)
                         .+.+-   ...-..+.|+|+|+.+.+--....-.+||+.+..|...-..|.       ..+.+++|.-|. .+++|+
T Consensus       233 ~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGS  311 (609)
T KOG4227|consen  233 QRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGS  311 (609)
T ss_pred             hhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccC
Confidence               11221   2233678999999999887766666788988765532222232       246677776554 489999


Q ss_pred             CCCcEEEEECCC----------C-------------eEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        606 GDGNVHMWDLSN----------G-------------HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       606 ~Dg~I~iwDl~s----------g-------------~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      .+-.|++|.+..          |             +.+..++||.+.++.+.|++...+|++.|-.+.++||.--+
T Consensus       312 D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  312 DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence            999999998742          1             23456889999999999999999999999999999997544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=5.3e-13  Score=148.57  Aligned_cols=221  Identities=17%  Similarity=0.138  Sum_probs=149.4

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeCC---CeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFSE---SYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~d---g~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      .+..+.+.+.+.+|||||+.||.++.+   ..|.+||+.+++                               .. .+..
T Consensus       190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-------------------------------~~-~l~~  237 (427)
T PRK02889        190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-------------------------------RR-VVAN  237 (427)
T ss_pred             EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-------------------------------EE-Eeec
Confidence            345667788899999999999877643   347777765432                               11 2222


Q ss_pred             ccCCEEEEEEcCCCCEEE-EEeCCCeEEEEE--CCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEEC-CCeEEEEEC--C
Q psy14440        459 HEGPVRKLSFSPDRSLLL-SCSQDNTIRLWS--LLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH-DRMARLWAT--D  532 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~-s~s~Dg~V~iwd--l~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~-Dg~i~lwd~--~  532 (711)
                      ..+.+.+.+|+|||+.|+ +.+.+|...||.  +.++. ...+..+...+.+..|+|+|++|+..+. +|...+|.+  .
T Consensus       238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~  316 (427)
T PRK02889        238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS  316 (427)
T ss_pred             CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC
Confidence            334566899999999886 567788766665  44443 4444445555677899999998887664 456666654  4


Q ss_pred             CCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCC-
Q psy14440        533 SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR---TIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG-  608 (711)
Q Consensus       533 ~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg---~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg-  608 (711)
                      ++...+.. .+.......+|+|+|++|+..+.++   .|.+||+.+++......+  ......+|+|||++|+.++.++ 
T Consensus       317 ~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g  393 (427)
T PRK02889        317 GGAAQRVT-FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGG  393 (427)
T ss_pred             CCceEEEe-cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCC
Confidence            44433332 2233345688999999999877654   699999988875443322  3346789999999988877544 


Q ss_pred             --cEEEEECCCCeEEEEeeCCCCCEEEEEEeCC
Q psy14440        609 --NVHMWDLSNGHLLTLLTGHTDVVRALCFSRD  639 (711)
Q Consensus       609 --~I~iwDl~sg~~i~~l~~h~~~V~sl~fspd  639 (711)
                        .+.+.++ +|+....+..+.+.+...+|+|-
T Consensus       394 ~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        394 RSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence              3666676 56666677767777888888863

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.7e-12  Score=145.08  Aligned_cols=219  Identities=15%  Similarity=0.080  Sum_probs=152.8

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeC---CCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFS---ESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~---dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      .+..|...+.+.+|||||+.||..+.   +..|.+|++.++.                               . ..+..
T Consensus       196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-------------------------------~-~~l~~  243 (435)
T PRK05137        196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-------------------------------R-ELVGN  243 (435)
T ss_pred             EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-------------------------------E-EEeec
Confidence            45677788999999999999888764   3567777764332                               1 23344


Q ss_pred             ccCCEEEEEEcCCCCEEE-EEeCCCe--EEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEEC-CC--eEEEEECC
Q psy14440        459 HEGPVRKLSFSPDRSLLL-SCSQDNT--IRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH-DR--MARLWATD  532 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~-s~s~Dg~--V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~-Dg--~i~lwd~~  532 (711)
                      +.+.+.+.+|+|||+.|+ +.+.++.  |.+||+.++.... +..+........|+|+|++++.++. +|  .|++||++
T Consensus       244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~  322 (435)
T PRK05137        244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD  322 (435)
T ss_pred             CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC
Confidence            566778899999999775 5555554  7778988776544 4445666778999999998888774 33  68888887


Q ss_pred             CCceeEEeecCCCCeeEEEEcCCCCEEEEEEcC---CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC--
Q psy14440        533 SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD---RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD--  607 (711)
Q Consensus       533 ~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D---g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D--  607 (711)
                      ++...+.. .+...+....|+|+|++|+..+.+   ..|.+||+.++. .+.+.. ...+....|+|||++|+..+.+  
T Consensus       323 g~~~~~lt-~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~  399 (435)
T PRK05137        323 GSNPRRIS-FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFRQTPG  399 (435)
T ss_pred             CCCeEEee-cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEEccCC
Confidence            76554433 345567778999999999887653   368889986554 344432 2356788999999998765542  


Q ss_pred             ----CcEEEEECCCCeEEEEeeCCCCCEEEEEEeC
Q psy14440        608 ----GNVHMWDLSNGHLLTLLTGHTDVVRALCFSR  638 (711)
Q Consensus       608 ----g~I~iwDl~sg~~i~~l~~h~~~V~sl~fsp  638 (711)
                          ..|.++|+..+.. ..+. ..+.+...+|+|
T Consensus       400 ~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        400 SGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSP  432 (435)
T ss_pred             CCCcceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence                2588888866554 3444 244566777875

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.54  E-value=6.2e-13  Score=131.45  Aligned_cols=149  Identities=23%  Similarity=0.389  Sum_probs=111.9

Q ss_pred             EEEEEcCCCCEEEEEEC----------CCeEEEEECCC-CceeEEee-cCCCCeeEEEEcCCCCEEEEEE--cCCcEEEE
Q psy14440        506 WDIKFSPHGYYFASAGH----------DRMARLWATDS-YHPLRLFV-GHYSDVDCVQFHPNSNYVATGS--SDRTIRLW  571 (711)
Q Consensus       506 ~~v~~sp~g~~l~sgs~----------Dg~i~lwd~~~-~~~~~~~~-~h~~~V~~v~~sp~~~~latgs--~Dg~I~iw  571 (711)
                      ..+.|++.|.+|++-..          -+...+|-++. ..+...+. ...+.|.+++|+|+|+.+|+..  .++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            35789999987776543          12344554432 23334433 2445799999999999876653  56799999


Q ss_pred             ECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC
Q psy14440        572 DCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG---DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       572 D~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~---Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~  648 (711)
                      |++ ++.+..+.  ...++.+.|||+|++|++|+.   .|.|.+||+++.+.+.....  ..++.++|+|||++|++++.
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEe
Confidence            996 66666664  567889999999999999874   36799999999998877753  34789999999999999874


Q ss_pred             ------CCcEEEEeCCC
Q psy14440        649 ------DCSVKLWDFAK  659 (711)
Q Consensus       649 ------Dg~V~iWdl~~  659 (711)
                            |+.++||++..
T Consensus       164 ~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             ccceeccccEEEEEecC
Confidence                  78999999853

>KOG2394|consensus

Probab=99.53  E-value=1.3e-13  Score=145.97  Aligned_cols=162  Identities=22%  Similarity=0.313  Sum_probs=121.5

Q ss_pred             CceEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeccCccccccccc-cCCcEEEEEec-CCCeeEEEeecccCCEE
Q psy14440        388 QQVTCAEISEDV-SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEME-CDDILVRIMDE-RNAETTRTLVGHEGPVR  464 (711)
Q Consensus       388 ~~V~~l~fs~dg-~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~-~~~~~~~~l~~h~~~V~  464 (711)
                      ..|+|+.|-+.+ ..+.+...+|.+.+++..-..     ........+.. .+.-.|..|-. .+...+..+.--.+.|.
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-----~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in  294 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-----GATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSIN  294 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccc-----cCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccc
Confidence            689999999854 566677789999999872110     00000000000 01111222211 12233334444466899


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCC
Q psy14440        465 KLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHY  544 (711)
Q Consensus       465 ~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~  544 (711)
                      ..+|++||++||+.|.||.+||||..+.+.+..++.--+...|++|||||+||++|++|-.|.||.+..++.+..-.+|.
T Consensus       295 ~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHk  374 (636)
T KOG2394|consen  295 EFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHK  374 (636)
T ss_pred             ceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccc
Confidence            99999999999999999999999999988888887778899999999999999999999999999999999999889999


Q ss_pred             CCeeEEEEcC
Q psy14440        545 SDVDCVQFHP  554 (711)
Q Consensus       545 ~~V~~v~~sp  554 (711)
                      ++|..|+|.|
T Consensus       375 SWVs~VaFDp  384 (636)
T KOG2394|consen  375 SWVSVVAFDP  384 (636)
T ss_pred             cceeeEeecc
Confidence            9999999987

>KOG2139|consensus

Probab=99.52  E-value=9.6e-13  Score=133.66  Aligned_cols=239  Identities=17%  Similarity=0.213  Sum_probs=164.8

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCCEEEEEEcCC-CCEEEEEECCCeEEEEECCCC----
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG-HGHPVWDIKFSPH-GYYFASAGHDRMARLWATDSY----  534 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~-h~~~V~~v~~sp~-g~~l~sgs~Dg~i~lwd~~~~----  534 (711)
                      ..+..++|++.-..++++..|-+|++|+-.. ++...++. ....|+|++|-|. +..|++|+.. -|.+|..+..    
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence            3567889988767788999999999999876 55555543 3568999999995 4577777764 5889976531    


Q ss_pred             ceeE----------EeecCCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEE
Q psy14440        535 HPLR----------LFVGHYSDVDCVQFHPNSNYVATGSS-DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       535 ~~~~----------~~~~h~~~V~~v~~sp~~~~latgs~-Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Las  603 (711)
                      ..++          .-.|| ..|+++.|.+||..+++++- |..|+|||..++.++....-.-+.++-+.|||||.+|++
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence            2211          11234 67999999999999999884 678999999999988777555678999999999999999


Q ss_pred             EeCCCcEEEEECCC-CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcccccccccccccccc-
Q psy14440        604 AGGDGNVHMWDLSN-GHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSS-  681 (711)
Q Consensus       604 gs~Dg~I~iwDl~s-g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~-  681 (711)
                      +.-|+..++|.... ....+-. ...+.|.+-+|+|+|++|+.++ -|.-++|.+.-..+.......     ...+... 
T Consensus       256 At~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~-sgsp~lysl~f~~~~~~~~~~-----~~~k~~ll  328 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFAC-SGSPRLYSLTFDGEDSVFLRP-----QSIKRVLL  328 (445)
T ss_pred             ecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEE-cCCceEEEEeecCCCccccCc-----ccceeeee
Confidence            99999999996543 3333323 3345899999999999776655 345667776544333222111     0000000 


Q ss_pred             -ccceeeecccC----CcceEEEEEccCCeeee
Q psy14440        682 -LAYLVRSYKTK----ASPLLHLIFSRRNILLR  709 (711)
Q Consensus       682 -~~~~l~~~~t~----~~pV~~v~Fs~~n~lla  709 (711)
                       .+....+.-+.    ..++.+++|-+.|.+||
T Consensus       329 iaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLa  361 (445)
T KOG2139|consen  329 IADLQEVTICAGQRLCCGEAQCLAWDPSGEYLA  361 (445)
T ss_pred             eccchhhhhhcCcccccCccceeeECCCCCEEE
Confidence             00000111122    45778888888888876

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.52  E-value=1.4e-12  Score=128.81  Aligned_cols=155  Identities=21%  Similarity=0.353  Sum_probs=114.7

Q ss_pred             EEEEEcCCCCEEEEEeC----------CCeEEEEECCC-CeEEEEEec-CCCCEEEEEEcCCCCEEEEEE--CCCeEEEE
Q psy14440        464 RKLSFSPDRSLLLSCSQ----------DNTIRLWSLLL-WRCLVVYKG-HGHPVWDIKFSPHGYYFASAG--HDRMARLW  529 (711)
Q Consensus       464 ~~l~fspdg~~L~s~s~----------Dg~V~iwdl~t-~~~~~~~~~-h~~~V~~v~~sp~g~~l~sgs--~Dg~i~lw  529 (711)
                      ..+.|+++|++|+.-..          -|...+|.++. ......+.. ..++|.+++|+|+|..|++..  .++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46788888887765433          13355555522 223333332 345799999999999876553  56799999


Q ss_pred             ECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEc---CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeC
Q psy14440        530 ATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS---DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       530 d~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~---Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~  606 (711)
                      |++ ++.+..+  +...++.|.|+|+|++|++|+.   .|.|.+||+++.+.+..+. | ..++.++|||||++|++++.
T Consensus        89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence            997 5556655  3567889999999999999874   4679999999888887765 3 34789999999999998874


Q ss_pred             ------CCcEEEEECCCCeEEEEe
Q psy14440        607 ------DGNVHMWDLSNGHLLTLL  624 (711)
Q Consensus       607 ------Dg~I~iwDl~sg~~i~~l  624 (711)
                            |+.++||+. +|+.+...
T Consensus       164 ~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             ccceeccccEEEEEe-cCeEeEec
Confidence                  788999998 57766554

>KOG1240|consensus

Probab=99.50  E-value=1.7e-12  Score=148.86  Aligned_cols=214  Identities=20%  Similarity=0.280  Sum_probs=163.9

Q ss_pred             CCeeEEEeecccCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-------CeEEEEEecCCCCEEEEEEcCCCCEEEEE
Q psy14440        449 NAETTRTLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLLL-------WRCLVVYKGHGHPVWDIKFSPHGYYFASA  520 (711)
Q Consensus       449 ~~~~~~~l~~h~~~V~~l~fspdg-~~L~s~s~Dg~V~iwdl~t-------~~~~~~~~~h~~~V~~v~~sp~g~~l~sg  520 (711)
                      .|..+..+..|+..|..++.++.. .+++|||.||+|++|++..       .++..+|...+..+.++.....++.||++
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            567778888999999999988765 8999999999999999852       34455666567889999999999999999


Q ss_pred             ECCCeEEEEECCCCc-------eeEEeecCCC--CeeEEEEcC-CCC-EEEEEEcCCcEEEEECCCCcEEEEee--CCCC
Q psy14440        521 GHDRMARLWATDSYH-------PLRLFVGHYS--DVDCVQFHP-NSN-YVATGSSDRTIRLWDCVTGSHVRLLT--GHKA  587 (711)
Q Consensus       521 s~Dg~i~lwd~~~~~-------~~~~~~~h~~--~V~~v~~sp-~~~-~latgs~Dg~I~iwD~~~~~~v~~~~--~h~~  587 (711)
                      +.||.|++.+++...       ..++...+..  -|.+-+|.. .+. .|+.+..-+.|..||+++......++  -..|
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            999999999998621       2222222222  233333432 233 67888888999999998876555443  3467


Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee-CCCCCEEEEEEeCC---CCEEEEEe--CCCcEEEEeCCCCC
Q psy14440        588 PVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLT-GHTDVVRALCFSRD---GNILASSG--QDCSVKLWDFAKLS  661 (711)
Q Consensus       588 ~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~-~h~~~V~sl~fspd---g~~Lasgs--~Dg~V~iWdl~~~~  661 (711)
                      .|++++.+|.+.++++|+..|.+.+||++-+..+..+. .+...|..+..++-   ....+++|  ..+.|.+|++.+..
T Consensus      1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence            89999999999999999999999999999999888875 34577888877763   24555555  46789999998865


Q ss_pred             C
Q psy14440        662 D  662 (711)
Q Consensus       662 ~  662 (711)
                      .
T Consensus      1277 ~ 1277 (1431)
T KOG1240|consen 1277 R 1277 (1431)
T ss_pred             c
Confidence            4

>KOG2111|consensus

Probab=99.49  E-value=2.3e-11  Score=122.13  Aligned_cols=215  Identities=19%  Similarity=0.281  Sum_probs=152.5

Q ss_pred             cEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEEecCC--CCEEEEEEcCCCCE
Q psy14440        440 ILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL-LWRCLVVYKGHG--HPVWDIKFSPHGYY  516 (711)
Q Consensus       440 ~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~-t~~~~~~~~~h~--~~V~~v~~sp~g~~  516 (711)
                      +.+.|||......+.++. -..+|.++.++.+  .|++.- .+.|.||... +-+.++.+..-.  ..+.+++-+....+
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            345667655555555554 4678999999765  466554 4679999986 445555554322  22433333333345


Q ss_pred             EEEE-ECCCeEEEEECCCCce--eEEeecCCCCeeEEEEcCCCCEEEEEEcCCc-EEEEECCCCcEEEEeeC--CCCCeE
Q psy14440        517 FASA-GHDRMARLWATDSYHP--LRLFVGHYSDVDCVQFHPNSNYVATGSSDRT-IRLWDCVTGSHVRLLTG--HKAPVY  590 (711)
Q Consensus       517 l~sg-s~Dg~i~lwd~~~~~~--~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~-I~iwD~~~~~~v~~~~~--h~~~I~  590 (711)
                      +|.- -.-|.|.|-|+...+.  ...+..|.++|.|++.+-+|..+||+|..|| |||||..+|..+..+.-  ....|+
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy  230 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY  230 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence            5543 3668999999987655  4778899999999999999999999999998 79999999999998863  456899


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCCe---E---------------------EEEeeCCCCCEEEEEEeCCCCEEEEE
Q psy14440        591 ALSFSVCGRFLASAGGDGNVHMWDLSNGH---L---------------------LTLLTGHTDVVRALCFSRDGNILASS  646 (711)
Q Consensus       591 ~la~spdg~~Lasgs~Dg~I~iwDl~sg~---~---------------------i~~l~~h~~~V~sl~fspdg~~Lasg  646 (711)
                      |++||||+.+||++++.|+|.||.++...   .                     +..+.-..+...-++|..+.+.++..
T Consensus       231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i  310 (346)
T KOG2111|consen  231 CIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAI  310 (346)
T ss_pred             EEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEE
Confidence            99999999999999999999999876522   1                     11111223445566777665666667


Q ss_pred             eCCCcEEEEeCC
Q psy14440        647 GQDCSVKLWDFA  658 (711)
Q Consensus       647 s~Dg~V~iWdl~  658 (711)
                      +.||+-+=+.+.
T Consensus       311 ~~Dgsy~k~~f~  322 (346)
T KOG2111|consen  311 CADGSYYKFKFD  322 (346)
T ss_pred             EeCCcEEEEEec
Confidence            778876655544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.47  E-value=5.1e-11  Score=129.29  Aligned_cols=270  Identities=17%  Similarity=0.142  Sum_probs=175.4

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCCceee----------eccCcccccccccc-CCcEEEEEecCCCeeEEEeecc
Q psy14440        391 TCAEISEDVSILAVGFSESYIKLWSLVPQKLKA----------MKSSDQLQDIEMEC-DDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       391 ~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~----------~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      ..+.|++||+++.+.+.||.|.++|+.+.++..          +..+.++..+.+++ ..+.+.++|..+.+.++.+...
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~  119 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG  119 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence            457799999999999999999999998876432          33445555555443 5788999999999988877543


Q ss_pred             -------cCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeEEE-EEecCCCCEEEEEEcCCCCEEEEE-ECCCeEEEE
Q psy14440        460 -------EGPVRKLSFSPDRSLLLSCSQ-DNTIRLWSLLLWRCLV-VYKGHGHPVWDIKFSPHGYYFASA-GHDRMARLW  529 (711)
Q Consensus       460 -------~~~V~~l~fspdg~~L~s~s~-Dg~V~iwdl~t~~~~~-~~~~h~~~V~~v~~sp~g~~l~sg-s~Dg~i~lw  529 (711)
                             ...+.++..++.+..++..-. .+.|.+.|......+. ..........+..|+++++||+++ ..+..+.++
T Consensus       120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~vi  199 (369)
T PF02239_consen  120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVI  199 (369)
T ss_dssp             EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred             cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEE
Confidence                   346788888998886665555 4788888876654332 233345677889999999988775 467789999


Q ss_pred             ECCCCceeEEeec----CCCCeeEEEEcCC----------CCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEe
Q psy14440        530 ATDSYHPLRLFVG----HYSDVDCVQFHPN----------SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFS  595 (711)
Q Consensus       530 d~~~~~~~~~~~~----h~~~V~~v~~sp~----------~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~s  595 (711)
                      |..+++.+..+..    |...+..+ .||.          +...++.-....+.+||..+.+.++.+....++ ..+..+
T Consensus       200 D~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~th  277 (369)
T PF02239_consen  200 DTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTH  277 (369)
T ss_dssp             ETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--
T ss_pred             eeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecC
Confidence            9998877665532    33333332 2332          222223333446678999999999999977666 788889


Q ss_pred             cCCCEEEEE----eCCCcEEEEECCCCeEEEEeeCC-CCCEEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCCC
Q psy14440        596 VCGRFLASA----GGDGNVHMWDLSNGHLLTLLTGH-TDVVRALCFSRDGNILASSGQ--DCSVKLWDFAKLSD  662 (711)
Q Consensus       596 pdg~~Lasg----s~Dg~I~iwDl~sg~~i~~l~~h-~~~V~sl~fspdg~~Lasgs~--Dg~V~iWdl~~~~~  662 (711)
                      |+++++++.    ...++|.++|.++.+.+..+... ...+..+.|+++|+.+..+..  +|.|.|||..++..
T Consensus       278 P~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  278 PDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             CCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence            999999998    45589999999999888877532 235889999999996655544  34799999987654

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.47  E-value=7.2e-11  Score=128.15  Aligned_cols=188  Identities=19%  Similarity=0.246  Sum_probs=131.3

Q ss_pred             cccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCC
Q psy14440        435 MECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG  514 (711)
Q Consensus       435 ~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g  514 (711)
                      +..+++.+.++|..+.+.+..+......-..+.|++||+++++++.||.|.++|+.+.+.+..++. .....+++++++|
T Consensus        11 ~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG   89 (369)
T PF02239_consen   11 VERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDG   89 (369)
T ss_dssp             EEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TT
T ss_pred             EecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCC
Confidence            445567777778788888888876555445678999999999999999999999999999999885 4456789999999


Q ss_pred             CEEEEEE-CCCeEEEEECCCCceeEEeecC-------CCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEE-EeeC
Q psy14440        515 YYFASAG-HDRMARLWATDSYHPLRLFVGH-------YSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSHVR-LLTG  584 (711)
Q Consensus       515 ~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~h-------~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~v~-~~~~  584 (711)
                      +++++++ ..+.+.++|.++.++++.+...       ...+..|..++....++..- ..+.|.+.|....+.+. ....
T Consensus        90 ~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~  169 (369)
T PF02239_consen   90 KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK  169 (369)
T ss_dssp             TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE
T ss_pred             CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec
Confidence            9988776 6899999999999998877532       34677888888877555554 45888888977654332 2222


Q ss_pred             CCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeEEEE
Q psy14440        585 HKAPVYALSFSVCGRFLASA-GGDGNVHMWDLSNGHLLTL  623 (711)
Q Consensus       585 h~~~I~~la~spdg~~Lasg-s~Dg~I~iwDl~sg~~i~~  623 (711)
                      .........|+++|+|++++ ..++.|-++|..+++.+..
T Consensus       170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~  209 (369)
T PF02239_consen  170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL  209 (369)
T ss_dssp             --TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             ccccccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence            34556788999999987665 4556788888777765544

...

>KOG3881|consensus

Probab=99.46  E-value=5.5e-12  Score=129.62  Aligned_cols=225  Identities=16%  Similarity=0.234  Sum_probs=165.7

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCE
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV  463 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V  463 (711)
                      ......|..++...  ..|++|..+|.+.+|......+.                           ......+..+ ..+
T Consensus       102 ~l~~~~I~gl~~~d--g~Litc~~sG~l~~~~~k~~d~h---------------------------ss~l~~la~g-~g~  151 (412)
T KOG3881|consen  102 SLGTKSIKGLKLAD--GTLITCVSSGNLQVRHDKSGDLH---------------------------SSKLIKLATG-PGL  151 (412)
T ss_pred             ccccccccchhhcC--CEEEEEecCCcEEEEeccCCccc---------------------------cccceeeecC-Cce
Confidence            33444555555443  36777788999999998643221                           0111112222 335


Q ss_pred             EEEEEcCCCC-EEEEEeCC--CeEEEEECCCCeEEEEEecC-------CC--CEEEEEEcCC--CCEEEEEECCCeEEEE
Q psy14440        464 RKLSFSPDRS-LLLSCSQD--NTIRLWSLLLWRCLVVYKGH-------GH--PVWDIKFSPH--GYYFASAGHDRMARLW  529 (711)
Q Consensus       464 ~~l~fspdg~-~L~s~s~D--g~V~iwdl~t~~~~~~~~~h-------~~--~V~~v~~sp~--g~~l~sgs~Dg~i~lw  529 (711)
                      ..+.-++... .+++|+..  ..+.+||++..+.+..-+.-       .-  +++++.|-+.  ...|++++.-+.+|+|
T Consensus       152 ~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~Y  231 (412)
T KOG3881|consen  152 YDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLY  231 (412)
T ss_pred             eeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEe
Confidence            5555555443 56668888  78999999887555443321       12  3456788876  7899999999999999


Q ss_pred             ECCCC-ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-eeCCCCCeEEEEEecCCCEEEEEeCC
Q psy14440        530 ATDSY-HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRL-LTGHKAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       530 d~~~~-~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~-~~~h~~~I~~la~spdg~~Lasgs~D  607 (711)
                      |++.+ +++..|.-....++++...|.+++|++|..-|.+..||+++++.... +.+..+.|.+|.++|.+.+||+||-|
T Consensus       232 Dt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD  311 (412)
T KOG3881|consen  232 DTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD  311 (412)
T ss_pred             cCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccc
Confidence            99865 67888888889999999999999999999999999999999998776 88999999999999999999999999


Q ss_pred             CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCC
Q psy14440        608 GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRD  639 (711)
Q Consensus       608 g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspd  639 (711)
                      ..|+|+|+.+.+++...- -...+++|.+.++
T Consensus       312 RyvRIhD~ktrkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  312 RYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             eeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence            999999999976654332 1234566666543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.46  E-value=1.9e-11  Score=135.80  Aligned_cols=206  Identities=19%  Similarity=0.175  Sum_probs=148.1

Q ss_pred             cEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCE
Q psy14440        440 ILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQD---NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYY  516 (711)
Q Consensus       440 ~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~D---g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~  516 (711)
                      ..+.++|.. +...+.+..+...+.+.+|+|||++|+.++.+   ..|++||+.+++.... ..+...+.+++|+|+|+.
T Consensus       170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence            356777764 34456666777789999999999999887654   4799999988765443 335556778999999987


Q ss_pred             EEEE-ECCC--eEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCcEEEEeeCCCCCeE
Q psy14440        517 FASA-GHDR--MARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD-R--TIRLWDCVTGSHVRLLTGHKAPVY  590 (711)
Q Consensus       517 l~sg-s~Dg--~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D-g--~I~iwD~~~~~~v~~~~~h~~~I~  590 (711)
                      |+.. +.++  .|++|++.++.... +..+........|+++|++|+.++.. +  .|.+||+.+++.. .+..+...+.
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~  325 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA  325 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence            7644 4444  58888988775443 34454555678999999998877653 3  5888898877654 3444556677


Q ss_pred             EEEEecCCCEEEEEeCCC---cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy14440        591 ALSFSVCGRFLASAGGDG---NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCS  651 (711)
Q Consensus       591 ~la~spdg~~Lasgs~Dg---~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~  651 (711)
                      ..+|+|+|++|+.++.++   .|.+||+.++... .+... ......+|++||++|+.++.++.
T Consensus       326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~  387 (417)
T TIGR02800       326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGG  387 (417)
T ss_pred             CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCC
Confidence            889999999999888775   7999999886543 23222 23456789999998888777653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=6.6e-11  Score=132.13  Aligned_cols=212  Identities=17%  Similarity=0.092  Sum_probs=145.3

Q ss_pred             EEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEE
Q psy14440        441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQD---NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYF  517 (711)
Q Consensus       441 ~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~D---g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l  517 (711)
                      .+.++|.... ..+.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++..... ...+.+....|+|+|+.+
T Consensus       180 ~l~~~d~~g~-~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGA-RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-NFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCC-CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-CCCCCcCCeEECCCCCEE
Confidence            4666676543 345566777889999999999998876643   36999999887654432 233445578999999988


Q ss_pred             EE-EECCC--eEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEc-C--CcEEEEECCCCcEEEEeeCCCCCeEE
Q psy14440        518 AS-AGHDR--MARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS-D--RTIRLWDCVTGSHVRLLTGHKAPVYA  591 (711)
Q Consensus       518 ~s-gs~Dg--~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~-D--g~I~iwD~~~~~~v~~~~~h~~~I~~  591 (711)
                      +. .+.+|  .|++||++++... .+..+........|+|+|+.|+..+. +  ..|+++|+.+++..+... .......
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~  335 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR  335 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence            74 44455  5888899887654 34455556677899999998877664 3  358888888887544332 2233446


Q ss_pred             EEEecCCCEEEEEeCC-C--cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC-C--cEEEEeCC
Q psy14440        592 LSFSVCGRFLASAGGD-G--NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQD-C--SVKLWDFA  658 (711)
Q Consensus       592 la~spdg~~Lasgs~D-g--~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D-g--~V~iWdl~  658 (711)
                      .+|+|||++|+..+.+ +  .|.+||+.+++... +. +.......+|+|||++|+..+.+ |  .|.++++.
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            7899999999877643 3  58899998876533 22 12223356899999988776654 3  35555653

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.43  E-value=3e-11  Score=134.26  Aligned_cols=220  Identities=20%  Similarity=0.137  Sum_probs=148.0

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCC---CeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSE---SYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~d---g~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      ..+..+...+.+.+||+||++||.+..+   ..|.+|++.+++                               . ..+.
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-------------------------------~-~~~~  230 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-------------------------------R-EKVA  230 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-------------------------------E-EEee
Confidence            3455566678888999999999887654   357777764332                               1 1222


Q ss_pred             cccCCEEEEEEcCCCCEEEE-EeCCC--eEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC-C--eEEEEEC
Q psy14440        458 GHEGPVRKLSFSPDRSLLLS-CSQDN--TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD-R--MARLWAT  531 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s-~s~Dg--~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D-g--~i~lwd~  531 (711)
                      .+.+.+.+++|+|||+.|+. .+.++  .|++||+.++.... +..+........|+++|++|+.++.. +  .|++|++
T Consensus       231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~  309 (417)
T TIGR02800       231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA  309 (417)
T ss_pred             cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            34556677899999997764 44444  58899998765443 33344455677999999988876643 3  5788888


Q ss_pred             CCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCC
Q psy14440        532 DSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR---TIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG  608 (711)
Q Consensus       532 ~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg---~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg  608 (711)
                      .+++.. .+..+...+..+.|+|+|++|+.++.++   .|.+||+.++... .+... ......+|+|||++|+.++.++
T Consensus       310 ~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       310 DGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            876643 3444556677889999999999988776   7899999886543 33322 2345568999999988877654


Q ss_pred             ---cEEEEECCCCeEEEEeeCCCCCEEEEEEe
Q psy14440        609 ---NVHMWDLSNGHLLTLLTGHTDVVRALCFS  637 (711)
Q Consensus       609 ---~I~iwDl~sg~~i~~l~~h~~~V~sl~fs  637 (711)
                         .+.+.+. +|+....+..+.+.+..++|+
T Consensus       387 ~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       387 GRGVLGLVST-DGRFRARLPLGNGDVREPAWS  417 (417)
T ss_pred             CcEEEEEEEC-CCceeeECCCCCCCcCCCCCC
Confidence               4555554 455555555555556655553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974|consensus

Probab=99.42  E-value=3.3e-12  Score=145.18  Aligned_cols=199  Identities=20%  Similarity=0.251  Sum_probs=163.0

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC----EEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP----VWDIKFSPHGYYFASAGHDRMARLWATDSYHP  536 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~----V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~  536 (711)
                      +.|....+.-+...++.++.+..+.+||...+.......+....    ..-+.++++.-++++|+.-+.+.+|+......
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence            44555666667788888889999999999876665555432211    12233455667999999999999999874433


Q ss_pred             eEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE-EeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q psy14440        537 LRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR-LLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       537 ~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~-~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl  615 (711)
                      -..+.||.+.|..+.|+-||+++++.|+|+++|+|++.+.+... ..-+|.+.|..++|.++  .+++++.|.+.++|+.
T Consensus       168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV  245 (967)
T ss_pred             cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence            33678999999999999999999999999999999999998877 66789999999999988  8999999999999975


Q ss_pred             CCCeEEEEeeCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        616 SNGHLLTLLTGHT-DVVRALCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       616 ~sg~~i~~l~~h~-~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                       +++.+..+.+|. ..|+.++...+.-.++|++.||++++||+.....
T Consensus       246 -~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~  292 (967)
T KOG0974|consen  246 -NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL  292 (967)
T ss_pred             -ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence             566667888886 5799999999999999999999999999876443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=6.1e-11  Score=132.40  Aligned_cols=220  Identities=17%  Similarity=0.088  Sum_probs=145.9

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeCC---CeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFSE---SYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~d---g~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      .+..+...+.+.+|||||+.||..+.+   ..|.+|++.+++..                                .+..
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~--------------------------------~l~~  240 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE--------------------------------QITN  240 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE--------------------------------EccC
Confidence            455666778899999999988876543   24666666543221                                1222


Q ss_pred             ccCCEEEEEEcCCCCEEE-EEeCCC--eEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEEC-CC--eEEEEECC
Q psy14440        459 HEGPVRKLSFSPDRSLLL-SCSQDN--TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH-DR--MARLWATD  532 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~-s~s~Dg--~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~-Dg--~i~lwd~~  532 (711)
                      ..+.+.+.+|+|||+.|+ +.+.+|  .|.+||+.++.... +..+........|+|+|+.++..+. +|  .|+++++.
T Consensus       241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~  319 (430)
T PRK00178        241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN  319 (430)
T ss_pred             CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC
Confidence            233455789999999887 444455  58888998876543 4445555667899999998877664 33  57777888


Q ss_pred             CCceeEEeecCCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC--
Q psy14440        533 SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD-R--TIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD--  607 (711)
Q Consensus       533 ~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D-g--~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D--  607 (711)
                      +++..+... .........|+|+|++|+..+.+ +  .|.+||+.+++.......  .......|+|||++|+..+.+  
T Consensus       320 ~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g  396 (430)
T PRK00178        320 GGRAERVTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQG  396 (430)
T ss_pred             CCCEEEeec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCC
Confidence            776544332 22334467899999999887653 2  588999988865333222  223356899999998876643  


Q ss_pred             -CcEEEEECCCCeEEEEeeCCCCCEEEEEEeC
Q psy14440        608 -GNVHMWDLSNGHLLTLLTGHTDVVRALCFSR  638 (711)
Q Consensus       608 -g~I~iwDl~sg~~i~~l~~h~~~V~sl~fsp  638 (711)
                       ..|.++++. |.....+..+.+.+...+|++
T Consensus       397 ~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        397 RGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             ceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence             357777874 444445555556677788876

>KOG4547|consensus

Probab=99.39  E-value=3e-11  Score=130.38  Aligned_cols=190  Identities=16%  Similarity=0.232  Sum_probs=158.4

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeEEEEEecC---CCCEEEEEEc------C--------------CCCEEEEEECCCeE
Q psy14440        470 PDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH---GHPVWDIKFS------P--------------HGYYFASAGHDRMA  526 (711)
Q Consensus       470 pdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h---~~~V~~v~~s------p--------------~g~~l~sgs~Dg~i  526 (711)
                      +...+++....||.+|+|+..+++....|...   .+...+..|.      |              +...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            34568999999999999999888776665421   2233333332      1              23467888899999


Q ss_pred             EEEECCCCceeEEee--cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEE
Q psy14440        527 RLWATDSYHPLRLFV--GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASA  604 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasg  604 (711)
                      .+|++..++....+.  +|.+.|+++.++.+-..|.+++.|+.+..|+...++.++.+......+.+++.+|||+.|++|
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            999999998887776  699999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCC-----CCEEEE-EeCCCcEEEEeCCCCC
Q psy14440        605 GGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRD-----GNILAS-SGQDCSVKLWDFAKLS  661 (711)
Q Consensus       605 s~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspd-----g~~Las-gs~Dg~V~iWdl~~~~  661 (711)
                      +  +.|++||+++++.+..|.||.+.|++++|..+     |.++.+ ...+..+.+|-+....
T Consensus       163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~  223 (541)
T KOG4547|consen  163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED  223 (541)
T ss_pred             c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence            7  58999999999999999999999999999876     565544 4556678889877633

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=1.1e-10  Score=129.58  Aligned_cols=216  Identities=18%  Similarity=0.132  Sum_probs=141.5

Q ss_pred             EEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEE---EEEeCCC--eEEEEECCCCeEEEEEecCCCCEEEEEEcCCCC
Q psy14440        441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLL---LSCSQDN--TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGY  515 (711)
Q Consensus       441 ~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L---~s~s~Dg--~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~  515 (711)
                      .+.+.|.... ..+.+......+.+-+|||||+.+   ++...+|  .|.+.++.+++...... ..+.....+|+|||+
T Consensus       166 ~l~~~d~dG~-~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~  243 (428)
T PRK01029        166 ELWSVDYDGQ-NLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKK  243 (428)
T ss_pred             eEEEEcCCCC-CceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCC
Confidence            4556665443 334455556677888999999752   2444443  58888988776544332 344455689999999


Q ss_pred             EEEEEEC-----CCeEEEEECCC---CceeEEeecCCCCeeEEEEcCCCCEEEEEEc-CCcEEEE--ECCC-CcEEEEee
Q psy14440        516 YFASAGH-----DRMARLWATDS---YHPLRLFVGHYSDVDCVQFHPNSNYVATGSS-DRTIRLW--DCVT-GSHVRLLT  583 (711)
Q Consensus       516 ~l~sgs~-----Dg~i~lwd~~~---~~~~~~~~~h~~~V~~v~~sp~~~~latgs~-Dg~I~iw--D~~~-~~~v~~~~  583 (711)
                      .|+..+.     +..+.+|++..   +...+...++.......+|+|||++|+..+. +|...+|  ++.. +...+.+.
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt  323 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT  323 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence            8887653     22344477664   3334444343345567899999998887763 5655555  4432 33345555


Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEeC
Q psy14440        584 GHKAPVYALSFSVCGRFLASAGGD---GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ---DCSVKLWDF  657 (711)
Q Consensus       584 ~h~~~I~~la~spdg~~Lasgs~D---g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~---Dg~V~iWdl  657 (711)
                      .+...+...+|||||++|+..+.+   ..|.+||+.+++...... ....+.+..|++||+.|+..+.   .+.|.+||+
T Consensus       324 ~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        324 KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            555677889999999999876543   369999999887644333 3345678999999998875443   346778887


Q ss_pred             CC
Q psy14440        658 AK  659 (711)
Q Consensus       658 ~~  659 (711)
                      ..
T Consensus       403 ~~  404 (428)
T PRK01029        403 IT  404 (428)
T ss_pred             CC
Confidence            64

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=1.8e-10  Score=128.98  Aligned_cols=212  Identities=17%  Similarity=0.130  Sum_probs=140.1

Q ss_pred             EEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEE
Q psy14440        441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQD---NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYF  517 (711)
Q Consensus       441 ~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~D---g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l  517 (711)
                      .+.++|.... ..+.+..+...+.+..|||||+.|+..+.+   ..|.+||+.+++...... .........|+|+|+.|
T Consensus       199 ~l~i~d~dG~-~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGY-NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCC-CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCCCcCCeeECCCCCEE
Confidence            4555664433 335566677789999999999988876543   358899998876533222 22334468999999977


Q ss_pred             EE-EECCCe--EEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEc-CC--cEEEEECCCCcEEEEeeCCCCCeEE
Q psy14440        518 AS-AGHDRM--ARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS-DR--TIRLWDCVTGSHVRLLTGHKAPVYA  591 (711)
Q Consensus       518 ~s-gs~Dg~--i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~-Dg--~I~iwD~~~~~~v~~~~~h~~~I~~  591 (711)
                      +. .+.+|.  |++||+++++.. .+..+.......+|+|+|++|+..+. ++  .|.++|+.+++..+.. ........
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~  354 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG  354 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence            65 456664  777788877644 34445556778899999999887664 33  5777788888754432 22223445


Q ss_pred             EEEecCCCEEEEEeCC-C--cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC-CCc--EEEEeCC
Q psy14440        592 LSFSVCGRFLASAGGD-G--NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ-DCS--VKLWDFA  658 (711)
Q Consensus       592 la~spdg~~Lasgs~D-g--~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~-Dg~--V~iWdl~  658 (711)
                      .+|+|||++|+..+.+ +  .|.++|+.+++... +... ....+.+|+|||+.|+..+. +|.  +.+++..
T Consensus       355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             eeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            7899999998876543 3  46667888876533 3222 12235589999998776654 343  5555653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.37  E-value=2.3e-09  Score=116.10  Aligned_cols=245  Identities=18%  Similarity=0.255  Sum_probs=160.8

Q ss_pred             CceEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCE
Q psy14440        388 QQVTCAEISEDVSILAVGFS----ESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV  463 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~----dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V  463 (711)
                      ..-..+++++++++|.+...    +|.|..|++....                   +.        .+.+..........
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-------------------g~--------L~~~~~~~~~g~~p   89 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-------------------GT--------LTLLNSVPSGGSSP   89 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-------------------TE--------EEEEEEEEESSSCE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-------------------ce--------eEEeeeeccCCCCc
Confidence            44556777888888877766    3566666653210                   11        11222222223345


Q ss_pred             EEEEEcCCCCEEEEEeC-CCeEEEEECCC-CeEEEE---Ee----------cCCCCEEEEEEcCCCCEEEEEE-CCCeEE
Q psy14440        464 RKLSFSPDRSLLLSCSQ-DNTIRLWSLLL-WRCLVV---YK----------GHGHPVWDIKFSPHGYYFASAG-HDRMAR  527 (711)
Q Consensus       464 ~~l~fspdg~~L~s~s~-Dg~V~iwdl~t-~~~~~~---~~----------~h~~~V~~v~~sp~g~~l~sgs-~Dg~i~  527 (711)
                      ..+++++++++|+++.. +|+|.++++.. +.....   +.          .......++.|+|+|+++++.. ....|+
T Consensus        90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~  169 (345)
T PF10282_consen   90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY  169 (345)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence            67999999999999875 89999999976 433322   21          1234578999999999888765 345799


Q ss_pred             EEECCCCc--ee--EEe-ecCCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECC--CCcE--EEEeeC----C--CCCeEE
Q psy14440        528 LWATDSYH--PL--RLF-VGHYSDVDCVQFHPNSNYVATGSS-DRTIRLWDCV--TGSH--VRLLTG----H--KAPVYA  591 (711)
Q Consensus       528 lwd~~~~~--~~--~~~-~~h~~~V~~v~~sp~~~~latgs~-Dg~I~iwD~~--~~~~--v~~~~~----h--~~~I~~  591 (711)
                      +|+++...  ..  ..+ ......-..+.|+|+++++++.+. +++|.+|++.  ++..  +..+..    .  ......
T Consensus       170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  249 (345)
T PF10282_consen  170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE  249 (345)
T ss_dssp             EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred             EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence            99987654  21  122 234566789999999999877664 7889999988  4432  222221    1  125788


Q ss_pred             EEEecCCCEEEEEe-CCCcEEEEECC--CCe--EEEEeeCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEeCCC
Q psy14440        592 LSFSVCGRFLASAG-GDGNVHMWDLS--NGH--LLTLLTGHTDVVRALCFSRDGNILASSG-QDCSVKLWDFAK  659 (711)
Q Consensus       592 la~spdg~~Lasgs-~Dg~I~iwDl~--sg~--~i~~l~~h~~~V~sl~fspdg~~Lasgs-~Dg~V~iWdl~~  659 (711)
                      |+++|||++|+++. ..++|.+|++.  +|+  .+..+.......+.++++++|++|++++ .++.|.+|++..
T Consensus       250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            99999999988775 56789999993  343  3445554455689999999999998887 567899998854

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2041|consensus

Probab=99.37  E-value=2.4e-11  Score=132.26  Aligned_cols=289  Identities=15%  Similarity=0.196  Sum_probs=200.5

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEE
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRK  465 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~  465 (711)
                      .+..+.|++|+....++|+|+.||.++|-.+.+.......     ..++.           ..+.....++.||++.|.-
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~-----~glaa-----------~snLsmNQtLeGH~~sV~v   76 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNK-----SGLAA-----------ASNLSMNQTLEGHNASVMV   76 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccc-----ccccc-----------ccccchhhhhccCcceEEE
Confidence            3467899999999999999999999999998653211100     00111           1122334678899999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeEEE--EEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeE-Eeec
Q psy14440        466 LSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV--VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLR-LFVG  542 (711)
Q Consensus       466 l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~--~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~-~~~~  542 (711)
                      +.|+.+.+.|-++..+|-|.+|-+-.+.-..  .-....+-|.+++|+.+|..++..-.||.|.+=.++..+... .+.+
T Consensus        77 vTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg  156 (1189)
T KOG2041|consen   77 VTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG  156 (1189)
T ss_pred             EEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch
Confidence            9999999999999999999999885543211  112245678899999999999999999999888877543221 1222


Q ss_pred             CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-------cEEE----EeeCCCCCeEEEEEe--------cCCCEEEE
Q psy14440        543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG-------SHVR----LLTGHKAPVYALSFS--------VCGRFLAS  603 (711)
Q Consensus       543 h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~-------~~v~----~~~~h~~~I~~la~s--------pdg~~Las  603 (711)
                        .....+.|++|.+.++.+-..|.+.+||.+..       .+.-    .+......|-.+.|.        ||...|++
T Consensus       157 --~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav  234 (1189)
T KOG2041|consen  157 --QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV  234 (1189)
T ss_pred             --heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE
Confidence              22457889999999888989999999996532       1211    112222335566663        46678999


Q ss_pred             EeCCCcEEEEECCCC-eEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccc
Q psy14440        604 AGGDGNVHMWDLSNG-HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSL  682 (711)
Q Consensus       604 gs~Dg~I~iwDl~sg-~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~  682 (711)
                      +-.+|.+.|..-.+. ..+..-.+  -.|.+..|+++|.+|+.+|.|..-.     .   .   ...+.-    ---+..
T Consensus       235 cy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~-----~---~---~d~n~v----~Fysp~  297 (1189)
T KOG2041|consen  235 CYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDAD-----E---P---TDSNKV----HFYSPY  297 (1189)
T ss_pred             EEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCccccc-----C---c---cccceE----EEeccc
Confidence            999999888754433 33322222  4578899999999999999763210     0   0   000000    001245


Q ss_pred             cceeeecccCCcceEEEEEccCCeeee
Q psy14440        683 AYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       683 ~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      +..++++++..+.|.++.|-..|+.+|
T Consensus       298 G~i~gtlkvpg~~It~lsWEg~gLriA  324 (1189)
T KOG2041|consen  298 GHIVGTLKVPGSCITGLSWEGTGLRIA  324 (1189)
T ss_pred             hhheEEEecCCceeeeeEEcCCceEEE
Confidence            778899999999999999999999888

>KOG1334|consensus

Probab=99.37  E-value=5.1e-12  Score=132.85  Aligned_cols=241  Identities=20%  Similarity=0.275  Sum_probs=182.4

Q ss_pred             CceeeeccCccccccccccCCcEEEEEecCCCeeEEEee-cccCCEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeE
Q psy14440        419 QKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV-GHEGPVRKLSFSP--DRSLLLSCSQDNTIRLWSLLL-WRC  494 (711)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~V~~l~fsp--dg~~L~s~s~Dg~V~iwdl~t-~~~  494 (711)
                      +.+..+.+...+..++.++++..+.+||+..+.....+. ||...|....|-|  +.+.+++++.||.|++=.+.. +.+
T Consensus       143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~  222 (559)
T KOG1334|consen  143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV  222 (559)
T ss_pred             CccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence            345566677778889999999999999998888766654 8999999999987  456899999999999987743 322


Q ss_pred             --EEEEecCCCCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceeEEeec---CCC---CeeEEEEcC-CCCEEEEEEc
Q psy14440        495 --LVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSYHPLRLFVG---HYS---DVDCVQFHP-NSNYVATGSS  564 (711)
Q Consensus       495 --~~~~~~h~~~V~~v~~sp~g-~~l~sgs~Dg~i~lwd~~~~~~~~~~~~---h~~---~V~~v~~sp-~~~~latgs~  564 (711)
                        ...+..|.++|..++.-|+. +-|.+++.|+.+.-+|++...+...+..   +..   ....++.+| +.+++++|+.
T Consensus       223 e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~  302 (559)
T KOG1334|consen  223 ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGS  302 (559)
T ss_pred             ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCCh
Confidence              23445689999999998854 6899999999999999998766544432   222   467888888 5568999999


Q ss_pred             CCcEEEEECCCCcE------EEEeeC------CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--C----------eE
Q psy14440        565 DRTIRLWDCVTGSH------VRLLTG------HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN--G----------HL  620 (711)
Q Consensus       565 Dg~I~iwD~~~~~~------v~~~~~------h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s--g----------~~  620 (711)
                      |..+++||.+.-..      +..|..      ....|+|++|+.++.-|.++-.|-.|++|.-..  |          ..
T Consensus       303 dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~  382 (559)
T KOG1334|consen  303 DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQY  382 (559)
T ss_pred             hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhc
Confidence            99999999864321      233332      235799999998777666777778899995322  3          23


Q ss_pred             EEE-eeCCCC--CEEEEEE-eCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        621 LTL-LTGHTD--VVRALCF-SRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       621 i~~-l~~h~~--~V~sl~f-spdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ++. ++||..  .|..+-| -|...|+++|+.-|.|.||+-..
T Consensus       383 ~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t  425 (559)
T KOG1334|consen  383 VKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT  425 (559)
T ss_pred             cchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence            334 789974  5666654 67789999999999999999654

>KOG1409|consensus

Probab=99.37  E-value=1.2e-11  Score=125.23  Aligned_cols=233  Identities=19%  Similarity=0.309  Sum_probs=167.7

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCC-------------CceeeeccCccccccccccCCcEEEEEe-
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVP-------------QKLKAMKSSDQLQDIEMECDDILVRIMD-  446 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~-------------~~~~~~~~~~~~~~l~~~~~d~~i~i~d-  446 (711)
                      ..+.||.+.|+....-+-..-+++.+.|.++|||--..             .+...+.+..+...+.++-+.|.+.-+. 
T Consensus        18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~   97 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL   97 (404)
T ss_pred             hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence            34567777888887777777788888899999985422             1233445555666667777777665442 


Q ss_pred             ---cCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC
Q psy14440        447 ---ERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD  523 (711)
Q Consensus       447 ---~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D  523 (711)
                         -+.....+....|.+.|..+-|+-....+++++.|..+.---.+.+..+..|.-. ....++.+.-.  +...|...
T Consensus        98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~~--~~fvGd~~  174 (404)
T KOG1409|consen   98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDAL--YAFVGDHS  174 (404)
T ss_pred             hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCceeeE--EEEecccc
Confidence               3445566777889999999999999999999999986654444444443333210 01111111111  55566666


Q ss_pred             CeEEEEEC--CCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEeeCCCCCeEEEEEecCCCE
Q psy14440        524 RMARLWAT--DSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH-VRLLTGHKAPVYALSFSVCGRF  600 (711)
Q Consensus       524 g~i~lwd~--~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~-v~~~~~h~~~I~~la~spdg~~  600 (711)
                      |.|.+..+  ..-..+..+.+|.+.+.+++|.+....+++|..|..|.+||+-.++- .....+|...|..++...--+.
T Consensus       175 gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~  254 (404)
T KOG1409|consen  175 GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ  254 (404)
T ss_pred             cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee
Confidence            76666544  34467888999999999999999999999999999999999865543 3466789999999988888899


Q ss_pred             EEEEeCCCcEEEEECC
Q psy14440        601 LASAGGDGNVHMWDLS  616 (711)
Q Consensus       601 Lasgs~Dg~I~iwDl~  616 (711)
                      |++++.||.|.+||++
T Consensus       255 l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  255 LISCGEDGGIVVWNMN  270 (404)
T ss_pred             eeeccCCCeEEEEecc
Confidence            9999999999999954

>KOG4497|consensus

Probab=99.37  E-value=2.1e-11  Score=122.57  Aligned_cols=257  Identities=18%  Similarity=0.247  Sum_probs=166.9

Q ss_pred             EecCCCceEEEEECCCCCEEE-EEeCCCeEEEEeCCCCceeeeccC----------ccccccccccCCc---EEEEEecC
Q psy14440        383 LLNARQQVTCAEISEDVSILA-VGFSESYIKLWSLVPQKLKAMKSS----------DQLQDIEMECDDI---LVRIMDER  448 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~La-tG~~dg~I~vWdl~~~~~~~~~~~----------~~~~~l~~~~~d~---~i~i~d~~  448 (711)
                      +.....++.+++|||||+.|. +..-+..|.||++.+.+...+...          .+++..++.+...   .+.+....
T Consensus        87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~  166 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK  166 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence            445567899999999996554 556688999999988765443322          2222222111100   00111111


Q ss_pred             CCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEE
Q psy14440        449 NAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARL  528 (711)
Q Consensus       449 ~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~l  528 (711)
                      .....+.+.-.+-..+++.|+|||..|++         ||---.-.+..|. -+-.+..++|+|.++++++|+.|+.+|+
T Consensus       167 ~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrv  236 (447)
T KOG4497|consen  167 AWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRV  236 (447)
T ss_pred             HHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhh
Confidence            12223344444556788899999877665         4322111111222 2346788999999999999999999887


Q ss_pred             EECCCCceeE------------------------------------------------------------E------eec
Q psy14440        529 WATDSYHPLR------------------------------------------------------------L------FVG  542 (711)
Q Consensus       529 wd~~~~~~~~------------------------------------------------------------~------~~~  542 (711)
                      .+--+.++..                                                            .      +..
T Consensus       237 lnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pn  316 (447)
T KOG4497|consen  237 LNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPN  316 (447)
T ss_pred             hceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCC
Confidence            6432211100                                                            0      001


Q ss_pred             CCCCeeEEEEcCCCCEEEEEEcC--CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q psy14440        543 HYSDVDCVQFHPNSNYVATGSSD--RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL  620 (711)
Q Consensus       543 h~~~V~~v~~sp~~~~latgs~D--g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~  620 (711)
                      ....+.-++|++|+.|++|-.+.  +.+.+||++..+....+. ...+|....|+|....|+.+....++++|.......
T Consensus       317 Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~  395 (447)
T KOG4497|consen  317 PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV  395 (447)
T ss_pred             cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE
Confidence            12346678999999999987643  568999998876544443 577899999999988888888888899999765444


Q ss_pred             EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy14440        621 LTLLTGHTDVVRALCFSRDGNILASSGQDCS  651 (711)
Q Consensus       621 i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~  651 (711)
                      +. ..+.+-.|.++.|.-+|..++.++.|.-
T Consensus       396 V~-vP~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  396 VG-VPKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             Ee-cCCCCceeeeEEecCCCcEEEEEcCCce
Confidence            43 3334467999999999999999999864

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1.3e-10  Score=129.91  Aligned_cols=217  Identities=17%  Similarity=0.064  Sum_probs=140.4

Q ss_pred             cCCCceEEEEECCCCCEEEEEeCC-C--eEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccC
Q psy14440        385 NARQQVTCAEISEDVSILAVGFSE-S--YIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEG  461 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg~~LatG~~d-g--~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~  461 (711)
                      .+...+.+..|||||+.||..+.+ +  .|.+|++.+++..                                .+....+
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--------------------------------~lt~~~g  262 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--------------------------------KVTSFPG  262 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--------------------------------EecCCCC
Confidence            334556788999999988876542 2  4556665432211                                1111122


Q ss_pred             CEEEEEEcCCCCEEEE-EeCCCe--EEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCc
Q psy14440        462 PVRKLSFSPDRSLLLS-CSQDNT--IRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH-DR--MARLWATDSYH  535 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s-~s~Dg~--V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~-Dg--~i~lwd~~~~~  535 (711)
                      .....+|+|||+.|+. .+.+|.  |.+||+.+++... +..+.......+|+|+|++++..+. ++  .|+++|+.+++
T Consensus       263 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~  341 (448)
T PRK04792        263 INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK  341 (448)
T ss_pred             CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            3346899999998765 455664  7888888776543 3345556678899999998877653 33  56667887776


Q ss_pred             eeEEeecCCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC-C--c
Q psy14440        536 PLRLFVGHYSDVDCVQFHPNSNYVATGSSD-R--TIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD-G--N  609 (711)
Q Consensus       536 ~~~~~~~h~~~V~~v~~sp~~~~latgs~D-g--~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D-g--~  609 (711)
                      ..+.. .........+|+|+|++|+..+.+ +  .|.++|+.+++.. .+... .......|+|||++|+..+.+ |  .
T Consensus       342 ~~~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~  418 (448)
T PRK04792        342 VSRLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQV  418 (448)
T ss_pred             EEEEe-cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceE
Confidence            54432 222234457899999998876653 3  4666788887653 33322 122345899999988766543 3  3


Q ss_pred             EEEEECCCCeEEEEeeCCCCCEEEEEEeC
Q psy14440        610 VHMWDLSNGHLLTLLTGHTDVVRALCFSR  638 (711)
Q Consensus       610 I~iwDl~sg~~i~~l~~h~~~V~sl~fsp  638 (711)
                      +.+++. +|+....+..+.+.+...+|+|
T Consensus       419 l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        419 LAAVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence            777786 6667777776667778888886

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=1.5e-10  Score=128.68  Aligned_cols=179  Identities=20%  Similarity=0.236  Sum_probs=119.9

Q ss_pred             ccCCEEEEEEcCCCCEEEEEeC-CC----eEEEEECCCC---eEEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCeEEEE
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQ-DN----TIRLWSLLLW---RCLVVYKGHGHPVWDIKFSPHGYYFASAG-HDRMARLW  529 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~-Dg----~V~iwdl~t~---~~~~~~~~h~~~V~~v~~sp~g~~l~sgs-~Dg~i~lw  529 (711)
                      ..+.....+|||||+.|+..+. +|    .+.+|++..+   .......++.......+|+|+|+.|+..+ .+|...+|
T Consensus       229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly  308 (428)
T PRK01029        229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY  308 (428)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence            3445567899999998886653 22    3444776642   33333333334456789999999888766 46655555


Q ss_pred             --ECCC-CceeEEeecCCCCeeEEEEcCCCCEEEEEEcC---CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEE
Q psy14440        530 --ATDS-YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD---RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       530 --d~~~-~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D---g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Las  603 (711)
                        +++. +...+.+..+...+....|+|||++|+..+.+   ..|.+||+.+++...... ....+....|+|||++|+.
T Consensus       309 ~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f  387 (428)
T PRK01029        309 IMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVY  387 (428)
T ss_pred             EEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEE
Confidence              4432 23344455555667889999999999877643   469999999887654433 3446778999999998875


Q ss_pred             EeC---CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCC
Q psy14440        604 AGG---DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRD  639 (711)
Q Consensus       604 gs~---Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspd  639 (711)
                      .+.   .+.|++||+.+++...... ..+.+...+|+|-
T Consensus       388 ~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~  425 (428)
T PRK01029        388 SAGNSNESELYLISLITKKTRKIVI-GSGEKRFPSWGAF  425 (428)
T ss_pred             EECCCCCceEEEEECCCCCEEEeec-CCCcccCceecCC
Confidence            433   3578899998877554443 3455677888874

>KOG4547|consensus

Probab=99.36  E-value=9.3e-11  Score=126.62  Aligned_cols=208  Identities=18%  Similarity=0.216  Sum_probs=158.2

Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEE----cCC
Q psy14440        396 SEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSF----SPD  471 (711)
Q Consensus       396 s~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~f----spd  471 (711)
                      .+-+.++|....||.+|||+...+++..-.     ..++..+..+....|...-...       .-...++.+    +.|
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~-----~p~~~~s~t~~~~~w~L~~~~s-------~~k~~~~~~~~~~s~~   69 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEF-----APIASLSGTCTYTKWGLSADYS-------PMKWLSLEKAKKASLD   69 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeee-----ccchhccCcceeEEEEEEeccc-------hHHHHhHHHHhhccCC
Confidence            345678999999999999999877654311     1111222233333443111000       001111111    224


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeEEEEEe--cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeE
Q psy14440        472 RSLLLSCSQDNTIRLWSLLLWRCLVVYK--GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDC  549 (711)
Q Consensus       472 g~~L~s~s~Dg~V~iwdl~t~~~~~~~~--~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~  549 (711)
                      ...++-|...|.|.+|++..++....+.  +|.+.|.++.|+.+-..|.+++.|+.+..|+......++++.+....+.+
T Consensus        70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s  149 (541)
T KOG4547|consen   70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS  149 (541)
T ss_pred             ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence            5578888889999999999999888776  68999999999998899999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecC-----CCEEEEE-eCCCcEEEEECCC
Q psy14440        550 VQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVC-----GRFLASA-GGDGNVHMWDLSN  617 (711)
Q Consensus       550 v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spd-----g~~Lasg-s~Dg~I~iwDl~s  617 (711)
                      ++.+|||..+++++  ++|++||+.+++.+..|.||.+.|.+++|.-+     |.++.++ ..+..|.+|-+..
T Consensus       150 l~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  150 LCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99999999999986  68999999999999999999999999999877     6666654 4455677886543

>KOG0280|consensus

Probab=99.34  E-value=1.1e-10  Score=116.11  Aligned_cols=218  Identities=19%  Similarity=0.219  Sum_probs=153.0

Q ss_pred             CCcEEEEEecCCCeeEEEeecccC------CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE--EEecCCCCEEEEE
Q psy14440        438 DDILVRIMDERNAETTRTLVGHEG------PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV--VYKGHGHPVWDIK  509 (711)
Q Consensus       438 ~d~~i~i~d~~~~~~~~~l~~h~~------~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~--~~~~h~~~V~~v~  509 (711)
                      ..|.|.++..........|++-+.      ...++.|++.+..++++..+|.+.+-+........  .++.|...+|...
T Consensus        93 a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~  172 (339)
T KOG0280|consen   93 ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAK  172 (339)
T ss_pred             ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeee
Confidence            345555555444444444433221      24578899999999999999999866665444433  7899999999999


Q ss_pred             EcC-CCCEEEEEECCCeEEEEECCC-CceeEE-eecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCC-CcEEEEeeC
Q psy14440        510 FSP-HGYYFASAGHDRMARLWATDS-YHPLRL-FVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVT-GSHVRLLTG  584 (711)
Q Consensus       510 ~sp-~g~~l~sgs~Dg~i~lwd~~~-~~~~~~-~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~-~~~v~~~~~  584 (711)
                      |+. +.+.+.+||.|+.+..||++. ++.+.. ..-|...|.+|.-+| .+.+|+||+.|-.|++||.++ ++.+..-. 
T Consensus       173 f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-  251 (339)
T KOG0280|consen  173 FSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-  251 (339)
T ss_pred             cccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-
Confidence            987 456899999999999999993 222222 446889999998887 678999999999999999984 55554433 


Q ss_pred             CCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCC--e---EEEEeeCCCCCEEEEEEeCCCCEEEEEe-CCCcEE-EE
Q psy14440        585 HKAPVYALSFSVC--GRFLASAGGDGNVHMWDLSNG--H---LLTLLTGHTDVVRALCFSRDGNILASSG-QDCSVK-LW  655 (711)
Q Consensus       585 h~~~I~~la~spd--g~~Lasgs~Dg~I~iwDl~sg--~---~i~~l~~h~~~V~sl~fspdg~~Lasgs-~Dg~V~-iW  655 (711)
                      -.+.|..+.++|.  ++.|+++-.+ -.+|-+...+  +   .....+.|.+-++.-.|.....+|+||+ .|+.++ +|
T Consensus       252 v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  252 VGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             cccceEEEEecchhhhHHHHHHHhc-CceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence            3488999999984  3344444443 4667766553  3   3445567777777777755556788876 577755 77


Q ss_pred             eC
Q psy14440        656 DF  657 (711)
Q Consensus       656 dl  657 (711)
                      -.
T Consensus       331 l~  332 (339)
T KOG0280|consen  331 LH  332 (339)
T ss_pred             ee
Confidence            54

>KOG0974|consensus

Probab=99.34  E-value=2.2e-11  Score=138.53  Aligned_cols=195  Identities=25%  Similarity=0.336  Sum_probs=152.8

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCC
Q psy14440        393 AEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDR  472 (711)
Q Consensus       393 l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg  472 (711)
                      ..+..+...++.++.+..+-+|+.....+.....+                      .+.. .+    ....-+-++++.
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~----------------------~er~-~l----~~~~~~g~s~~~  145 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQS----------------------DERC-TL----YSSLIIGDSAEE  145 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCC----------------------CceE-EE----EeEEEEeccCcE
Confidence            56667777888888888888888754432211100                      0000 00    012233445666


Q ss_pred             CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeE-EeecCCCCeeEEE
Q psy14440        473 SLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLR-LFVGHYSDVDCVQ  551 (711)
Q Consensus       473 ~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~-~~~~h~~~V~~v~  551 (711)
                      -++++|+.-+.|.+|+......-..+.+|.+.|.++.|+.+|+++++.|.|+++|+|++++.+... ..-+|...|..++
T Consensus       146 ~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~  225 (967)
T KOG0974|consen  146 LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC  225 (967)
T ss_pred             EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence            789999999999999997433333588999999999999999999999999999999999988776 6668999999999


Q ss_pred             EcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy14440        552 FHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHK-APVYALSFSVCGRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       552 ~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~-~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s  617 (711)
                      |+++  +++|++.|.++++|+. .+..+..+.+|. ..|..++..++...++|++.||.+++||+..
T Consensus       226 ~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  226 FLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            9988  9999999999999975 455566888886 4699999999999999999999999999754

>KOG2315|consensus

Probab=99.33  E-value=5e-10  Score=120.20  Aligned_cols=263  Identities=16%  Similarity=0.191  Sum_probs=174.0

Q ss_pred             ceEEEEECCCCCEEEEEe-----C-----CCeEEEEeCCCCceeee-----------ccCccccccccccCCcEEEEEec
Q psy14440        389 QVTCAEISEDVSILAVGF-----S-----ESYIKLWSLVPQKLKAM-----------KSSDQLQDIEMECDDILVRIMDE  447 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~-----~-----dg~I~vWdl~~~~~~~~-----------~~~~~~~~l~~~~~d~~i~i~d~  447 (711)
                      .+.++.|||-|++|.+--     .     .-.+++|++.+......           .++. ...++.---.+.+++|+.
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~-dEsl~arlv~nev~f~~~  153 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSI-DESLAARLVSNEVQFYDL  153 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCccccccc-chhhhhhhhcceEEEEec
Confidence            788999999999998611     1     23478999987432211           0111 112333334567888887


Q ss_pred             CCCeeEEEeecccCCEEEEEEcCCCC--EEEE-----EeCCCeEEEEECCCCeEEEEE--ec-CCCCEEEEEEcCCCCE-
Q psy14440        448 RNAETTRTLVGHEGPVRKLSFSPDRS--LLLS-----CSQDNTIRLWSLLLWRCLVVY--KG-HGHPVWDIKFSPHGYY-  516 (711)
Q Consensus       448 ~~~~~~~~l~~h~~~V~~l~fspdg~--~L~s-----~s~Dg~V~iwdl~t~~~~~~~--~~-h~~~V~~v~~sp~g~~-  516 (711)
                      .+...+. -.-|...|+.+.+||.+.  ++++     .|.-+.|+||.+.....-...  +. ....=..+.|++-|.- 
T Consensus       154 ~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~L  232 (566)
T KOG2315|consen  154 GSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTAL  232 (566)
T ss_pred             CCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceE
Confidence            6633322 223577899999998743  4443     345567999987521111100  00 1112234778876652 


Q ss_pred             EE--EEECC---------CeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEE--EEcCCcEEEEECCCCcEEEEee
Q psy14440        517 FA--SAGHD---------RMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVAT--GSSDRTIRLWDCVTGSHVRLLT  583 (711)
Q Consensus       517 l~--sgs~D---------g~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~lat--gs~Dg~I~iwD~~~~~~v~~~~  583 (711)
                      |+  +..-|         .++++.+++ +...+.--...++|.++.|+++++-+++  |-.=.++.|||++ ++.+..| 
T Consensus       233 LvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df-  309 (566)
T KOG2315|consen  233 LVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF-  309 (566)
T ss_pred             EEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC-
Confidence            22  22223         468888888 3333333345799999999999987665  4456789999975 5555554 


Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC------CCcEEE
Q psy14440        584 GHKAPVYALSFSVCGRFLASAGGD---GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ------DCSVKL  654 (711)
Q Consensus       584 ~h~~~I~~la~spdg~~Lasgs~D---g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~------Dg~V~i  654 (711)
                       ..++-+++-|+|.|++|+.+|.+   |.|-|||+.+.+++..+.....  +-+.|+|||.+++|++.      |+.++|
T Consensus       310 -~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Ki  386 (566)
T KOG2315|consen  310 -PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKI  386 (566)
T ss_pred             -CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEE
Confidence             46777899999999999988864   7999999999999988876554  45789999999999875      789999


Q ss_pred             EeCCC
Q psy14440        655 WDFAK  659 (711)
Q Consensus       655 Wdl~~  659 (711)
                      |++..
T Consensus       387 whytG  391 (566)
T KOG2315|consen  387 WHYTG  391 (566)
T ss_pred             EEecC
Confidence            99864

>KOG2321|consensus

Probab=99.33  E-value=7.9e-11  Score=126.06  Aligned_cols=241  Identities=16%  Similarity=0.223  Sum_probs=189.1

Q ss_pred             CCceEEEEEec-------CC--CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc--------eeeeccCcccccccccc
Q psy14440        375 LPSIACYTLLN-------AR--QQVTCAEISEDVSILAVGFSESYIKLWSLVPQK--------LKAMKSSDQLQDIEMEC  437 (711)
Q Consensus       375 lps~~~~tl~~-------h~--~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~--------~~~~~~~~~~~~l~~~~  437 (711)
                      -|.+.+|.+.+       |.  +.|.-.-+|.|-+.++.-..|.+|.+....+.-        -+.+..+...+.+.+++
T Consensus        73 KP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~g  152 (703)
T KOG2321|consen   73 KPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVG  152 (703)
T ss_pred             CCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEee
Confidence            38888887644       33  346666778888888888889999888764422        12244455566677777


Q ss_pred             CCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec------CCC-----CEE
Q psy14440        438 DDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG------HGH-----PVW  506 (711)
Q Consensus       438 ~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~------h~~-----~V~  506 (711)
                      ....|+-+++..|..+..+....+.++++..++...+|++|+.+|.|-.||.++...+.++..      |.+     .|+
T Consensus       153 sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT  232 (703)
T KOG2321|consen  153 SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT  232 (703)
T ss_pred             cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce
Confidence            788889999999999999998889999999999999999999999999999987665555432      222     499


Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCceeEEee-cCCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCcEEEEee
Q psy14440        507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFV-GHYSDVDCVQFHPN--SNYVATGSSDRTIRLWDCVTGSHVRLLT  583 (711)
Q Consensus       507 ~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~--~~~latgs~Dg~I~iwD~~~~~~v~~~~  583 (711)
                      ++.|+.+|-.+++|+.+|.+.|||++..+++..-. +...+|..+.|.+.  ++.|++. ....++|||-.+|+....+.
T Consensus       233 al~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE  311 (703)
T KOG2321|consen  233 ALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE  311 (703)
T ss_pred             EEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc
Confidence            99999999999999999999999999988876532 33456888888775  3445444 36789999999999888776


Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy14440        584 GHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       584 ~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s  617 (711)
                       ....++.+|+-|++.++++|-.++.+..|=+..
T Consensus       312 -pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  312 -PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             -ccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence             455599999999999999999988887776544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.28  E-value=3.1e-08  Score=107.25  Aligned_cols=200  Identities=17%  Similarity=0.218  Sum_probs=138.0

Q ss_pred             cCCEEEEEEcCCCCEEEEEeC----CCeEEEEECCCC--e--EEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEE
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQ----DNTIRLWSLLLW--R--CLVVYKGHGHPVWDIKFSPHGYYFASAG-HDRMARLWA  530 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~----Dg~V~iwdl~t~--~--~~~~~~~h~~~V~~v~~sp~g~~l~sgs-~Dg~i~lwd  530 (711)
                      ......+++++++++|+++..    +|.|..|++...  +  .+............+++++++++++++. .+|++.+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            345577899999999999877    468999988653  3  3333433455566799999999998887 589999999


Q ss_pred             CCCC-ceeEE---ee----------cCCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCCCc--EE--EEee-CCCCCeE
Q psy14440        531 TDSY-HPLRL---FV----------GHYSDVDCVQFHPNSNYVATGSS-DRTIRLWDCVTGS--HV--RLLT-GHKAPVY  590 (711)
Q Consensus       531 ~~~~-~~~~~---~~----------~h~~~V~~v~~sp~~~~latgs~-Dg~I~iwD~~~~~--~v--~~~~-~h~~~I~  590 (711)
                      ++.. .....   +.          .......++.|+|+++++++... ...|++|++....  ..  ..+. .....-.
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            9873 32222   11          12345789999999999888653 4579999987654  32  2222 3445678


Q ss_pred             EEEEecCCCEEEEEe-CCCcEEEEECC--CCeE--EEEeeC----CC--CCEEEEEEeCCCCEEEEEe-CCCcEEEEeCC
Q psy14440        591 ALSFSVCGRFLASAG-GDGNVHMWDLS--NGHL--LTLLTG----HT--DVVRALCFSRDGNILASSG-QDCSVKLWDFA  658 (711)
Q Consensus       591 ~la~spdg~~Lasgs-~Dg~I~iwDl~--sg~~--i~~l~~----h~--~~V~sl~fspdg~~Lasgs-~Dg~V~iWdl~  658 (711)
                      .++|+|+|+++++.+ .++.|.+|++.  +++.  +..+..    ..  .....|++++||++|+++. .+++|.+|++.
T Consensus       196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            999999999887765 46789999988  5533  333321    11  2578999999999887765 56789999995


Q ss_pred             C
Q psy14440        659 K  659 (711)
Q Consensus       659 ~  659 (711)
                      .
T Consensus       276 ~  276 (345)
T PF10282_consen  276 P  276 (345)
T ss_dssp             T
T ss_pred             c
Confidence            4

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.25  E-value=5.9e-09  Score=127.23  Aligned_cols=250  Identities=14%  Similarity=0.191  Sum_probs=163.6

Q ss_pred             EEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcC
Q psy14440        392 CAEISED-VSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSP  470 (711)
Q Consensus       392 ~l~fs~d-g~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fsp  470 (711)
                      .++++.+ ++++++-..++.|++||..+..+..+......     +..+          +...   .++-..-.++++++
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~-----G~~d----------G~~~---~a~f~~P~GIavd~  633 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEE-----GLRD----------GSFE---DATFNRPQGLAYNA  633 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCc-----CCCC----------Cchh---ccccCCCcEEEEeC
Confidence            5677764 56677777778888888765433222110000     0000          0000   01223457899999


Q ss_pred             CCCEEEEEeC-CCeEEEEECCCCeEEEEEecC-----------------CCCEEEEEEcC-CCCEEEEEECCCeEEEEEC
Q psy14440        471 DRSLLLSCSQ-DNTIRLWSLLLWRCLVVYKGH-----------------GHPVWDIKFSP-HGYYFASAGHDRMARLWAT  531 (711)
Q Consensus       471 dg~~L~s~s~-Dg~V~iwdl~t~~~~~~~~~h-----------------~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~  531 (711)
                      +++.|+++.. .+.|+++|+.++.. .++.+.                 -..-+++++++ ++..+++.+.++.|++||.
T Consensus       634 ~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~  712 (1057)
T PLN02919        634 KKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNI  712 (1057)
T ss_pred             CCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEEC
Confidence            8887766654 56799999877653 333210                 11246899999 5667778788999999999


Q ss_pred             CCCceeEEeecC---------------CCCeeEEEEcCCCCEEE-EEEcCCcEEEEECCCCcEEEEeeC-----------
Q psy14440        532 DSYHPLRLFVGH---------------YSDVDCVQFHPNSNYVA-TGSSDRTIRLWDCVTGSHVRLLTG-----------  584 (711)
Q Consensus       532 ~~~~~~~~~~~h---------------~~~V~~v~~sp~~~~la-tgs~Dg~I~iwD~~~~~~v~~~~~-----------  584 (711)
                      .++... .+.+.               ......|++++++++|+ +.+.++.|++||+.++.......+           
T Consensus       713 ~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~f  791 (1057)
T PLN02919        713 SDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKF  791 (1057)
T ss_pred             CCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccc
Confidence            876432 22221               12345799999998554 455678999999987653211100           


Q ss_pred             --C--------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee-------------CCCCCEEEEEEeCCCC
Q psy14440        585 --H--------KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLT-------------GHTDVVRALCFSRDGN  641 (711)
Q Consensus       585 --h--------~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~-------------~h~~~V~sl~fspdg~  641 (711)
                        +        -.....++++++|+.+++-+.+++|++||..++.......             +.-.....++++++|+
T Consensus       792 G~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~  871 (1057)
T PLN02919        792 GDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR  871 (1057)
T ss_pred             cCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC
Confidence              0        1124588999999988888899999999998876653321             1112567899999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCC
Q psy14440        642 ILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       642 ~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      ++++.+.+++|++||+.+..
T Consensus       872 lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        872 LFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             EEEEECCCCEEEEEECCCCc
Confidence            99999999999999998754

>KOG1064|consensus

Probab=99.25  E-value=2.4e-11  Score=143.55  Aligned_cols=204  Identities=17%  Similarity=0.271  Sum_probs=148.1

Q ss_pred             cccCCcEEEEEecCCCeeEEEee-cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCC
Q psy14440        435 MECDDILVRIMDERNAETTRTLV-GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH  513 (711)
Q Consensus       435 ~~~~d~~i~i~d~~~~~~~~~l~-~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~  513 (711)
                      .++.||.+++|....+..+..++ +....|+.+.|+.+|+.+..+..||.+.+|... .+....+++|+....++.|-. 
T Consensus      2225 tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~- 2302 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG- 2302 (2439)
T ss_pred             ecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee-
Confidence            33344444444433444433332 223789999999999999999999999999987 667778889999999999975 


Q ss_pred             CCEEEEEE---CCCeEEEEECCCCc-eeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCe
Q psy14440        514 GYYFASAG---HDRMARLWATDSYH-PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPV  589 (711)
Q Consensus       514 g~~l~sgs---~Dg~i~lwd~~~~~-~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I  589 (711)
                       ..+++++   .++.+.+||..-.. .-.+-..|.+.++|+++.|+...|++|+.+|.|++||++..+..+.+..     
T Consensus      2303 -s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----- 2376 (2439)
T KOG1064|consen 2303 -SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----- 2376 (2439)
T ss_pred             -hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----
Confidence             5666665   57899999975321 1122268999999999999999999999999999999998887776654     


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC---CCCC--EEEEE-EeCCCCEEEEEeCCCc
Q psy14440        590 YALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG---HTDV--VRALC-FSRDGNILASSGQDCS  651 (711)
Q Consensus       590 ~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~---h~~~--V~sl~-fspdg~~Lasgs~Dg~  651 (711)
                          +. ...++++|+..|.|+||++..-..+..+..   |.+-  +.... +--.++.|.+||.||+
T Consensus      2377 ----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred             ----hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence                44 567899999999999999988777766642   2221  11111 1123456777888874

>KOG4190|consensus

Probab=99.23  E-value=1.2e-11  Score=131.06  Aligned_cols=204  Identities=24%  Similarity=0.344  Sum_probs=157.1

Q ss_pred             EEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-------CCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCe
Q psy14440        453 TRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL-------LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRM  525 (711)
Q Consensus       453 ~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~-------t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~  525 (711)
                      ...+.||...|..++--.+.+.+++++.|++|++|+++       +..|..+|..|..+|.++.|-.+.++++++  ||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            45678999999888877788899999999999999984       345788999999999999999988888876  789


Q ss_pred             EEEEECCCCceeEEee--cCCCCeeEEEEcCC--CCEEEEE-EcCCcEEEEECCCCcEEEEee-----CCCCCeEEEEEe
Q psy14440        526 ARLWATDSYHPLRLFV--GHYSDVDCVQFHPN--SNYVATG-SSDRTIRLWDCVTGSHVRLLT-----GHKAPVYALSFS  595 (711)
Q Consensus       526 i~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~--~~~latg-s~Dg~I~iwD~~~~~~v~~~~-----~h~~~I~~la~s  595 (711)
                      +.+||.-.+.++..+.  ...+.+..+..-++  ...+..| +...+|+++|.+.+.-+..++     +.++.+.+++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999988777665332  12233333333343  3344444 678999999999887665554     445678999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEE-EeCCC
Q psy14440        596 VCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKL-WDFAK  659 (711)
Q Consensus       596 pdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~i-Wdl~~  659 (711)
                      +.|+++++|-.+|+|.+.|.++|+.+..++...-....++ .|..+.|+....|.++.| |..-.
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald  949 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD  949 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence            9999999999999999999999999988876554444443 355677888888888888 86543

>KOG4190|consensus

Probab=99.23  E-value=3.3e-11  Score=127.78  Aligned_cols=254  Identities=15%  Similarity=0.229  Sum_probs=183.3

Q ss_pred             CCCceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeE
Q psy14440        374 SLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETT  453 (711)
Q Consensus       374 ~lps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  453 (711)
                      ++-.+.+..+.+|.+.|..++--.+.+-+++++.|.+|++|++...--                        ...+....
T Consensus       722 n~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD------------------------~~~tsaCQ  777 (1034)
T KOG4190|consen  722 NFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD------------------------EIGTSACQ  777 (1034)
T ss_pred             ccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC------------------------ccccceee
Confidence            345678888999999999998888888899999999999999854210                        11234456


Q ss_pred             EEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe--cCCCCEEEEEEcC--CCCEEEE-EECCCeEEE
Q psy14440        454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK--GHGHPVWDIKFSP--HGYYFAS-AGHDRMARL  528 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~--~h~~~V~~v~~sp--~g~~l~s-gs~Dg~i~l  528 (711)
                      .++..|+.+|.++.|-.+.+++++|  ||.|.+||---++.+....  ...+.+..+..-+  +...++. ++...+|++
T Consensus       778 fTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl  855 (1034)
T KOG4190|consen  778 FTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKL  855 (1034)
T ss_pred             eEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhhee
Confidence            7888999999999999999888876  7889999987776655322  1122222333323  3444444 478899999


Q ss_pred             EECCCCceeEEe-----ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEE
Q psy14440        529 WATDSYHPLRLF-----VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       529 wd~~~~~~~~~~-----~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Las  603 (711)
                      +|.+...-...+     .+...-+.|++..+.|+.+++|-+.|+|.+.|.++|+.+..+.........++ .|..+.|+.
T Consensus       856 ~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~  934 (1034)
T KOG4190|consen  856 FDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQ  934 (1034)
T ss_pred             eecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHh
Confidence            999876544333     24556789999999999999999999999999999998887776555555554 356678888


Q ss_pred             EeCCCcEEE-EECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        604 AGGDGNVHM-WDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       604 gs~Dg~I~i-wDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      ...|.++.+ |...+|......+....+..-+.  .-|..|+++...+.+.||-
T Consensus       935 saldHslaVnWhaldgimh~q~kpppepahflq--svgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  935 SALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQ--SVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             hcccceeEeeehhcCCeeeeccCCCCcchhhhh--ccCceeEEeccCcEEEEEe
Confidence            888999999 98888776665553332221111  1255677777666777774

>KOG1354|consensus

Probab=99.20  E-value=8.5e-10  Score=111.80  Aligned_cols=227  Identities=19%  Similarity=0.272  Sum_probs=148.4

Q ss_pred             CceEEEEECCCC--CEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCC------CeeEEEe-ec
Q psy14440        388 QQVTCAEISEDV--SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERN------AETTRTL-VG  458 (711)
Q Consensus       388 ~~V~~l~fs~dg--~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~l-~~  458 (711)
                      +.|+.+.|.+++  ..+...+.|.+|++|.+.....+.-...-....  ..+.-..+++--...      ..+.+.+ .+
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~--~~~~~~~lr~p~~~~~~~~vea~prRv~aNa  162 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEG--PPGTITSLRLPVEGRHDLEVEASPRRVYANA  162 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccC--CCCccceeeceeeccccceeeeeeeeecccc
Confidence            456677777765  356677789999999986654332100000000  000011111111110      1112222 36


Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEEecCC-----CCEEEEEEcCC-CCEEEEEECCCeEEEE
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW---RCLVVYKGHG-----HPVWDIKFSPH-GYYFASAGHDRMARLW  529 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~---~~~~~~~~h~-----~~V~~v~~sp~-g~~l~sgs~Dg~i~lw  529 (711)
                      |...|.+++++.|+..++++ .|=.|.+|+++--   -.++-++.++     .-|++..|+|. .+.|+-.+..|+|++.
T Consensus       163 HtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc  241 (433)
T KOG1354|consen  163 HTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC  241 (433)
T ss_pred             ceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence            88899999999999999987 4667999998532   2344444443     45888899994 4688888899999999


Q ss_pred             ECCCCce----eE------------EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-CCcEEEEeeCCCC-----
Q psy14440        530 ATDSYHP----LR------------LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV-TGSHVRLLTGHKA-----  587 (711)
Q Consensus       530 d~~~~~~----~~------------~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~-~~~~v~~~~~h~~-----  587 (711)
                      |++....    ..            .|.+--+.|..+.|+.+|+|+++-. =-+|++||+. ..+.+.++.-|..     
T Consensus       242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kL  320 (433)
T KOG1354|consen  242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKL  320 (433)
T ss_pred             echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHH
Confidence            9984211    11            1223345688999999999999875 3689999994 5566777665521     


Q ss_pred             -------C---eEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q psy14440        588 -------P---VYALSFSVCGRFLASAGGDGNVHMWDLSNG  618 (711)
Q Consensus       588 -------~---I~~la~spdg~~Lasgs~Dg~I~iwDl~sg  618 (711)
                             .   -..++|+.++.+++||+..+.+++|++..|
T Consensus       321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence                   2   235789999999999999999999996554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.19  E-value=2.7e-08  Score=106.14  Aligned_cols=219  Identities=11%  Similarity=0.084  Sum_probs=153.8

Q ss_pred             cEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeEEEEEecC-------C
Q psy14440        440 ILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQ----------DNTIRLWSLLLWRCLVVYKGH-------G  502 (711)
Q Consensus       440 ~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~----------Dg~V~iwdl~t~~~~~~~~~h-------~  502 (711)
                      +.+.++|..+.+.+..+..-..+-- + +|+||+.|++|..          +..|.+||..+++.+..+..-       .
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            5677777777777777664444432 4 9999998887765          688999999999999887642       2


Q ss_pred             CCEEEEEEcCCCCEEEEEE-C-CCeEEEEECCCCceeEEeec----------------CCC---------------CeeE
Q psy14440        503 HPVWDIKFSPHGYYFASAG-H-DRMARLWATDSYHPLRLFVG----------------HYS---------------DVDC  549 (711)
Q Consensus       503 ~~V~~v~~sp~g~~l~sgs-~-Dg~i~lwd~~~~~~~~~~~~----------------h~~---------------~V~~  549 (711)
                      ..-..++++++|+++++.. . +..|.++|+.+++.+..+.-                |..               .+..
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence            2334789999999888776 3 78999999998776553321                000               0111


Q ss_pred             EE--------------EcC-CCCEEEEEEcCCcEEEEECCC-----CcEEEEeeC-------CCCCeEEEEEecCCCEEE
Q psy14440        550 VQ--------------FHP-NSNYVATGSSDRTIRLWDCVT-----GSHVRLLTG-------HKAPVYALSFSVCGRFLA  602 (711)
Q Consensus       550 v~--------------~sp-~~~~latgs~Dg~I~iwD~~~-----~~~v~~~~~-------h~~~I~~la~spdg~~La  602 (711)
                      ..              |.+ +|.++++... |+|.+.|+..     ...+..+..       ..+.+.-++++++|+.++
T Consensus       185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence            11              123 6777776665 9999999543     233333221       234455599999999888


Q ss_pred             EEe----------CCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCC-EEEEEe-CCCcEEEEeCCCCCC
Q psy14440        603 SAG----------GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGN-ILASSG-QDCSVKLWDFAKLSD  662 (711)
Q Consensus       603 sgs----------~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~-~Lasgs-~Dg~V~iWdl~~~~~  662 (711)
                      +..          ..+.|.++|..+++.+..+.. ...++++++++||+ +|++.. .++.|.+.|+.+.+.
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence            743          225799999999999998874 34789999999999 777666 578899999877543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.19  E-value=1.1e-08  Score=108.80  Aligned_cols=265  Identities=17%  Similarity=0.169  Sum_probs=175.6

Q ss_pred             CceEEEEECCCCCEEEEEeCCCe---------------EEEEeCCCCceeeeccCccc---cc--ccccc--------CC
Q psy14440        388 QQVTCAEISEDVSILAVGFSESY---------------IKLWSLVPQKLKAMKSSDQL---QD--IEMEC--------DD  439 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~---------------I~vWdl~~~~~~~~~~~~~~---~~--l~~~~--------~d  439 (711)
                      ..|.-+.|||.+++|.+-+..+.               +.|||..++.+..-......   ..  +-...        -.
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~  151 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG  151 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence            56889999999999999665443               89999988765432111100   10  11111        23


Q ss_pred             cEEEEEec-CCCe--eEEEeecccCCEEEEEEcCCCC--EEEE-----EeCCCeEEEEECCCCeEEEEEecCCCCEEEEE
Q psy14440        440 ILVRIMDE-RNAE--TTRTLVGHEGPVRKLSFSPDRS--LLLS-----CSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIK  509 (711)
Q Consensus       440 ~~i~i~d~-~~~~--~~~~l~~h~~~V~~l~fspdg~--~L~s-----~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~  509 (711)
                      ..+++++. .+..  ..+.++  ...|...+|+|.++  .|+.     .+.++++++|.+..+..+.+-.-....=..+.
T Consensus       152 ~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk  229 (561)
T COG5354         152 SSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK  229 (561)
T ss_pred             CeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence            45666664 1111  111221  24678889998643  3443     46688999999987766654433233334688


Q ss_pred             EcCCCCEEEEEE-----------CCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEE--cCCcEEEEECCCC
Q psy14440        510 FSPHGYYFASAG-----------HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS--SDRTIRLWDCVTG  576 (711)
Q Consensus       510 ~sp~g~~l~sgs-----------~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs--~Dg~I~iwD~~~~  576 (711)
                      |.+.|+++++-.           ....++++++... .++...+-.+.|..++|.|.++.+++.+  .+.++.++|++..
T Consensus       230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             EecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence            999998776532           1245778888743 3444336688999999999888877655  6888999998866


Q ss_pred             cEEEEeeCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCeEEE-EeeCCCCCEEEEEEeCCCCEEEEEe-----
Q psy14440        577 SHVRLLTGHKAPVYALSFSVCGRFLASAGGD---GNVHMWDLSNGHLLT-LLTGHTDVVRALCFSRDGNILASSG-----  647 (711)
Q Consensus       577 ~~v~~~~~h~~~I~~la~spdg~~Lasgs~D---g~I~iwDl~sg~~i~-~l~~h~~~V~sl~fspdg~~Lasgs-----  647 (711)
                       .+  +......=+.+.|||.+++++.++-|   |.|.+||......+. .+.+.+  ..-+.|+|||.++.+..     
T Consensus       309 -l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~  383 (561)
T COG5354         309 -LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKL  383 (561)
T ss_pred             -eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCccc
Confidence             22  23344555778899999999998765   689999987654443 565543  34567999999887764     


Q ss_pred             -CCCcEEEEeCCCC
Q psy14440        648 -QDCSVKLWDFAKL  660 (711)
Q Consensus       648 -~Dg~V~iWdl~~~  660 (711)
                       .|..|.|||+...
T Consensus       384 ~~Dn~i~l~~v~g~  397 (561)
T COG5354         384 RVDNSIKLWDVYGA  397 (561)
T ss_pred             ccCcceEEEEecCc
Confidence             3789999999754

>KOG1064|consensus

Probab=99.18  E-value=8.7e-11  Score=139.01  Aligned_cols=190  Identities=21%  Similarity=0.388  Sum_probs=158.7

Q ss_pred             eecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        456 LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG-HGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       456 l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~-h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      ++.|-..|.++.=+|...+.+||+.||.|++|....++.+..++. ....|+.+.|+.+|+.+..+..||.+.+|... .
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            334556677888888888999999999999999998888888763 24789999999999999999999999999987 5


Q ss_pred             ceeEEeecCCCCeeEEEEcCCCCEEEEEE---cCCcEEEEECCCC---cEEEEeeCCCCCeEEEEEecCCCEEEEEeCCC
Q psy14440        535 HPLRLFVGHYSDVDCVQFHPNSNYVATGS---SDRTIRLWDCVTG---SHVRLLTGHKAPVYALSFSVCGRFLASAGGDG  608 (711)
Q Consensus       535 ~~~~~~~~h~~~V~~v~~sp~~~~latgs---~Dg~I~iwD~~~~---~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg  608 (711)
                      ++......|....+.+.|-.  ..+++++   .++.+.+||..-.   .++.  +.|.+.++++++.|....|++||.+|
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcC
Confidence            66777778988888888874  5666654   4789999997532   2333  78999999999999999999999999


Q ss_pred             cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        609 NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       609 ~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      .|++||++..+++..+..         +. ...++++|+..|.++||++...
T Consensus      2359 ~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             cEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence            999999998887766654         44 5678999999999999999875

>KOG2314|consensus

Probab=99.18  E-value=2.9e-09  Score=113.81  Aligned_cols=264  Identities=16%  Similarity=0.216  Sum_probs=182.1

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEc
Q psy14440        390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFS  469 (711)
Q Consensus       390 V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fs  469 (711)
                      =+-+.|||-|++|++--.-| |.+|--.+                               ...++.+ .|. .|.-+.||
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~-------------------------------f~r~~RF-~Hp-~Vq~idfS  258 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGES-------------------------------FDRIQRF-YHP-GVQFIDFS  258 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCcc-------------------------------HHHHHhc-cCC-CceeeecC
Confidence            35678999999999987777 77785321                               1122222 244 38889999


Q ss_pred             CCCCEEEEEeC-----------CCeEEEEECCCCeEEEEEec--CCCCEEE-EEEcCCCCEEEEEECCCeEEEEECCCCc
Q psy14440        470 PDRSLLLSCSQ-----------DNTIRLWSLLLWRCLVVYKG--HGHPVWD-IKFSPHGYYFASAGHDRMARLWATDSYH  535 (711)
Q Consensus       470 pdg~~L~s~s~-----------Dg~V~iwdl~t~~~~~~~~~--h~~~V~~-v~~sp~g~~l~sgs~Dg~i~lwd~~~~~  535 (711)
                      |+.+||+|-|.           ...++|||+.+|...+.+..  ....+|- +.||-+++|+|.-.. ..|.||+..+..
T Consensus       259 P~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~  337 (698)
T KOG2314|consen  259 PNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM  337 (698)
T ss_pred             CccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee
Confidence            99999998653           15699999999999888876  3444554 589999999998876 568899887644


Q ss_pred             eeEEeecCCCCeeEEEEcCCCCEEEEEEc-----CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeC----
Q psy14440        536 PLRLFVGHYSDVDCVQFHPNSNYVATGSS-----DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG----  606 (711)
Q Consensus       536 ~~~~~~~h~~~V~~v~~sp~~~~latgs~-----Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~----  606 (711)
                      .+..-.-.-..|....|+|.++.||.-+.     -..+.+..+-+++.+++-.-|+-.-..+-|-.+|.+|+.--+    
T Consensus       338 lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK  417 (698)
T KOG2314|consen  338 LLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTK  417 (698)
T ss_pred             eecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecc
Confidence            33322234467889999999999887543     235778888888888877766655556778888998875321    


Q ss_pred             ------CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEeCCCCCCccCcccccccccccc
Q psy14440        607 ------DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ---DCSVKLWDFAKLSDEVGTEEVNLSHSADI  677 (711)
Q Consensus       607 ------Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~---Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~  677 (711)
                            -..+.|+.++....-...-.-...|...+|-|.|+.+++-+.   ..++.+|.+...                 
T Consensus       418 ~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~-----------------  480 (698)
T KOG2314|consen  418 SKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETN-----------------  480 (698)
T ss_pred             ccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecC-----------------
Confidence                  123556666554432222223567889999999987766543   357888887741                 


Q ss_pred             ccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        678 KNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       678 ~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                        .....++..+..  .....|.|+|.|.+++
T Consensus       481 --~~~~~lVk~~dk--~~~N~vfwsPkG~fvv  508 (698)
T KOG2314|consen  481 --IKKPSLVKELDK--KFANTVFWSPKGRFVV  508 (698)
T ss_pred             --CCchhhhhhhcc--cccceEEEcCCCcEEE
Confidence              123344444543  5667899999999887

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.17  E-value=1.7e-08  Score=106.17  Aligned_cols=200  Identities=19%  Similarity=0.181  Sum_probs=142.7

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeeeccCc------c----------cccccccc-------CCcEEEEEecCCCeeE
Q psy14440        397 EDVSILAVGFSESYIKLWSLVPQKLKAMKSSD------Q----------LQDIEMEC-------DDILVRIMDERNAETT  453 (711)
Q Consensus       397 ~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~------~----------~~~l~~~~-------~d~~i~i~d~~~~~~~  453 (711)
                      .||+.++.. ..|.|.+||-++.++..+...-      +          ....+...       ..|...+++...+-.+
T Consensus       276 sDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~i  354 (668)
T COG4946         276 SDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSI  354 (668)
T ss_pred             CCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeE
Confidence            467766543 4577999999887776554331      0          01111111       2334444444433332


Q ss_pred             EEeecccCCEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy14440        454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDN-TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATD  532 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~~L~s~s~Dg-~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~  532 (711)
                        -.+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++..+ +...-+.|.++..+++|++++++.....+.++|++
T Consensus       355 --qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         355 --QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             --EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence              247888899999999999999999999 89999999876544 44567889999999999999999999999999999


Q ss_pred             CCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCC----cEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEE
Q psy14440        533 SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR----TIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFL  601 (711)
Q Consensus       533 ~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg----~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~L  601 (711)
                      ++....+-....+-|+.+.|||+++++|.+--+|    .|+++|+.+++.....+ ..+.=.+-+|.|||++|
T Consensus       432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryL  503 (668)
T COG4946         432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYL  503 (668)
T ss_pred             CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEE
Confidence            9987766666778899999999999999887655    68999998887655433 22222344555555543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.17  E-value=1.6e-08  Score=110.84  Aligned_cols=248  Identities=13%  Similarity=0.039  Sum_probs=163.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeecc-Cc--------cccccccccCCcEEEEEecCCCeeEEEeecccCCEE----
Q psy14440        398 DVSILAVGFSESYIKLWSLVPQKLKAMKS-SD--------QLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVR----  464 (711)
Q Consensus       398 dg~~LatG~~dg~I~vWdl~~~~~~~~~~-~~--------~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~----  464 (711)
                      ++..+++|+.+|.|..+|..++++.-... ..        ....+.+...++.++.+|..+++.+..+......+.    
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~  183 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS  183 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence            45677888889999999987665432111 00        123455566788999999999988776654332211    


Q ss_pred             -EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC-------CEEEEEEcC--CCCEEEEEECCCeEEEEECCCC
Q psy14440        465 -KLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGH-------PVWDIKFSP--HGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       465 -~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~-------~V~~v~~sp--~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                       +...  .+..++.++.+|.+..+|..+++.+........       .+..+.-+|  .+..+++++.+|.++.||..++
T Consensus       184 ~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG  261 (377)
T TIGR03300       184 ASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG  261 (377)
T ss_pred             CCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence             1111  234678888899999999999887655431100       000111111  3557888889999999999999


Q ss_pred             ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCC-CCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy14440        535 HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHK-APVYALSFSVCGRFLASAGGDGNVHMW  613 (711)
Q Consensus       535 ~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~-~~I~~la~spdg~~Lasgs~Dg~I~iw  613 (711)
                      +.+.....  ........  .+..+++++.||.|..+|..+|+.+....... ....+...  .+..|++++.+|.|+++
T Consensus       262 ~~~W~~~~--~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~  335 (377)
T TIGR03300       262 RVLWKRDA--SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWL  335 (377)
T ss_pred             cEEEeecc--CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence            87665542  11222222  46788888899999999999998776553211 12222222  36788999999999999


Q ss_pred             ECCCCeEEEEeeCCCCCEE-EEEEeCCCCEEEEEeCCCcEEEE
Q psy14440        614 DLSNGHLLTLLTGHTDVVR-ALCFSRDGNILASSGQDCSVKLW  655 (711)
Q Consensus       614 Dl~sg~~i~~l~~h~~~V~-sl~fspdg~~Lasgs~Dg~V~iW  655 (711)
                      |..+|+.+..+..+...+. +..+. + +.|+.++.||.|..|
T Consensus       336 d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       336 SREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             ECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence            9999999998887664433 33333 3 458888999998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.16  E-value=3e-08  Score=108.74  Aligned_cols=251  Identities=11%  Similarity=-0.051  Sum_probs=162.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceee-eccC--------ccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEc
Q psy14440        399 VSILAVGFSESYIKLWSLVPQKLKA-MKSS--------DQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFS  469 (711)
Q Consensus       399 g~~LatG~~dg~I~vWdl~~~~~~~-~~~~--------~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fs  469 (711)
                      +..+++++.+|.|..+|..++++.- ....        .....+.+++.++.++.+|..+++........ +.+.+....
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v  143 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV  143 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE
Confidence            5577777788888888876655431 1111        12344556677889999999888887665432 223221111


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEE-----EEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCC
Q psy14440        470 PDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVW-----DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHY  544 (711)
Q Consensus       470 pdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~-----~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~  544 (711)
                       .+..++.++.+|.|..||..+++.+..+......+.     +...  .+..++.++.++.+..+|.++++.+.......
T Consensus       144 -~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~  220 (377)
T TIGR03300       144 -ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVAL  220 (377)
T ss_pred             -ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence             345677788899999999999998877664332211     1111  13477788889999999999887665432110


Q ss_pred             C----C------e-eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy14440        545 S----D------V-DCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW  613 (711)
Q Consensus       545 ~----~------V-~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iw  613 (711)
                      .    .      + .+..+  .+..+++++.+|.++.||..+|+.+.....  ......+  .++..+++++.||.|..+
T Consensus       221 ~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~--~~~~~vyv~~~~G~l~~~  294 (377)
T TIGR03300       221 PKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPA--VDDNRLYVTDADGVVVAL  294 (377)
T ss_pred             CCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCce--EeCCEEEEECCCCeEEEE
Confidence            0    0      1 11112  356788888899999999999987765542  1122222  246778888899999999


Q ss_pred             ECCCCeEEEEeeCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        614 DLSNGHLLTLLTGHT-DVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       614 Dl~sg~~i~~l~~h~-~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      |..+|+.+....... ....+...  .+..|++++.+|.|++||..+..
T Consensus       295 d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~  341 (377)
T TIGR03300       295 DRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGS  341 (377)
T ss_pred             ECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence            999998876653222 22223233  36788999999999999986643

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.13  E-value=1.5e-07  Score=96.97  Aligned_cols=249  Identities=17%  Similarity=0.238  Sum_probs=167.8

Q ss_pred             CCCceEEEEECCCCCEEEEEeCC---CeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCC
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSE---SYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGP  462 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~d---g~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~  462 (711)
                      +.+..+=++|+++++.|.++..+   |.|..|.++.                   ++|.+.+.+.      ..+.+  .+
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~-------------------~~G~Lt~ln~------~~~~g--~~   90 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP-------------------DDGRLTFLNR------QTLPG--SP   90 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC-------------------CCCeEEEeec------cccCC--CC
Confidence            44567788999999998887665   5555555532                   1122222221      11112  22


Q ss_pred             EEEEEEcCCCCEEEEEeC-CCeEEEEECCC-CeEEE--EEecCCCC----------EEEEEEcCCCCEEEEEE-CCCeEE
Q psy14440        463 VRKLSFSPDRSLLLSCSQ-DNTIRLWSLLL-WRCLV--VYKGHGHP----------VWDIKFSPHGYYFASAG-HDRMAR  527 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s~-Dg~V~iwdl~t-~~~~~--~~~~h~~~----------V~~v~~sp~g~~l~sgs-~Dg~i~  527 (711)
                      -+.++++++|++|+++.. -|.|.++-++. |....  ....|.+.          +....+.|+++++++.. .--.|.
T Consensus        91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~  170 (346)
T COG2706          91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF  170 (346)
T ss_pred             CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence            378999999999999976 47899998855 33221  12234444          88899999999998886 234688


Q ss_pred             EEECCCCceeEE---eecCCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCCC-cEEEEeeC---------CCCCeEEEE
Q psy14440        528 LWATDSYHPLRL---FVGHYSDVDCVQFHPNSNYVATGSS-DRTIRLWDCVTG-SHVRLLTG---------HKAPVYALS  593 (711)
Q Consensus       528 lwd~~~~~~~~~---~~~h~~~V~~v~~sp~~~~latgs~-Dg~I~iwD~~~~-~~v~~~~~---------h~~~I~~la  593 (711)
                      +|+++.++....   .......-..|.|||++++..+.+. +++|.+|..... ..+..+..         .......|.
T Consensus       171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh  250 (346)
T COG2706         171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH  250 (346)
T ss_pred             EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence            999987654321   1134556789999999999877765 899999998773 22333221         234567889


Q ss_pred             EecCCCEEEEEeC-CCcEEEEECCC--CeE--EEEeeCCCCCEEEEEEeCCCCEEEEEeCC-CcEEEEeCCCCC
Q psy14440        594 FSVCGRFLASAGG-DGNVHMWDLSN--GHL--LTLLTGHTDVVRALCFSRDGNILASSGQD-CSVKLWDFAKLS  661 (711)
Q Consensus       594 ~spdg~~Lasgs~-Dg~I~iwDl~s--g~~--i~~l~~h~~~V~sl~fspdg~~Lasgs~D-g~V~iWdl~~~~  661 (711)
                      +++||++|.++.. ...|.+|.+..  |++  +.....+...-+.+.|+++|++|++++.+ ..|.+|.+...+
T Consensus       251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            9999999998853 34788887643  443  22333444557899999999999998865 469999887643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.13  E-value=1.1e-09  Score=109.64  Aligned_cols=244  Identities=21%  Similarity=0.293  Sum_probs=167.4

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc-------
Q psy14440        387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH-------  459 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h-------  459 (711)
                      .+.|+++.|...|.+||+|...|.|.+|.-....-..                          .+....+++|       
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ce--------------------------ykf~teFQshe~EFDYL   79 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCE--------------------------YKFFTEFQSHELEFDYL   79 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccc--------------------------hhhhhhhcccccchhhh
Confidence            3679999999999999999999999999764322000                          0111122222       


Q ss_pred             -----cCCEEEEEEcCCCC--EEEEEeCCCeEEEEECCCC-------------------------------------eEE
Q psy14440        460 -----EGPVRKLSFSPDRS--LLLSCSQDNTIRLWSLLLW-------------------------------------RCL  495 (711)
Q Consensus       460 -----~~~V~~l~fspdg~--~L~s~s~Dg~V~iwdl~t~-------------------------------------~~~  495 (711)
                           ...|..+.|..++.  .++..+.|.+|++|.+...                                     +.+
T Consensus        80 kSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~ii  159 (460)
T COG5170          80 KSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEII  159 (460)
T ss_pred             hhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEE
Confidence                 23577888876543  5666778999999976321                                     001


Q ss_pred             -----EEE-ecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce---eEEeecCC-----CCeeEEEEcC-CCCEEE
Q psy14440        496 -----VVY-KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP---LRLFVGHY-----SDVDCVQFHP-NSNYVA  560 (711)
Q Consensus       496 -----~~~-~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~---~~~~~~h~-----~~V~~v~~sp-~~~~la  560 (711)
                           +.+ ..|..-|.++.|+.+...++++ .|-.|.+|+++-...   +..+..|.     .-|++..||| ..+.+.
T Consensus       160 aa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm  238 (460)
T COG5170         160 AAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM  238 (460)
T ss_pred             EeccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEE
Confidence                 112 4577788899999888777776 578899998864322   22223332     3478899999 466777


Q ss_pred             EEEcCCcEEEEECCCCcE----------------EEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eEEEE
Q psy14440        561 TGSSDRTIRLWDCVTGSH----------------VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNG-HLLTL  623 (711)
Q Consensus       561 tgs~Dg~I~iwD~~~~~~----------------v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg-~~i~~  623 (711)
                      ..++.|.|++-|++....                +.-|.+-...|..+.|+++|+||++-+. -+|+|||.+.. .++++
T Consensus       239 YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikT  317 (460)
T COG5170         239 YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKT  317 (460)
T ss_pred             EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCcee
Confidence            888899999999984321                1112233467889999999999998765 58999999864 46666


Q ss_pred             eeCCC------------CCE---EEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        624 LTGHT------------DVV---RALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       624 l~~h~------------~~V---~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      +.-|.            ..|   ..+.||-|.+.+.+|+..+...+|-+.
T Consensus       318 i~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         318 IPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             echHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence            64442            223   357889898999999988888887643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.12  E-value=1.8e-08  Score=107.23  Aligned_cols=266  Identities=15%  Similarity=0.115  Sum_probs=181.5

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc---------eeeeccCcccccccc---------------ccCCcEE
Q psy14440        387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK---------LKAMKSSDQLQDIEM---------------ECDDILV  442 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~---------~~~~~~~~~~~~l~~---------------~~~d~~i  442 (711)
                      .-.+..++|||.|++|++....| |.+|.-....         ++.+..++....+..               -..+..+
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~  110 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNV  110 (561)
T ss_pred             CcchhheeecCcchheehhhccc-eEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCce
Confidence            45688899999999999887766 8888765432         112223333322221               1123368


Q ss_pred             EEEecCCCeeEEEeecccCC--EE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeEE-EEEec-CCCCEEEEEEcCCC--C
Q psy14440        443 RIMDERNAETTRTLVGHEGP--VR-KLSFSPDRSLLLSCSQDNTIRLWSLLLWRCL-VVYKG-HGHPVWDIKFSPHG--Y  515 (711)
Q Consensus       443 ~i~d~~~~~~~~~l~~h~~~--V~-~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~-~~~~~-h~~~V~~v~~sp~g--~  515 (711)
                      .+||..++..+..+.+-..+  .+ -+.|+-+..+++=... ..+.|+++ +.... .-++. ....|.+..|+|.|  .
T Consensus       111 ~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~  188 (561)
T COG5354         111 FVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHD  188 (561)
T ss_pred             eEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc-CeEEEEec-CCccccCchhhccccceeeEEecCCCCCc
Confidence            99999999999988877666  55 6788888887665432 45999997 33221 11111 13568888999964  3


Q ss_pred             EEEE-----EECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEE-----------cCCcEEEEECCCCcEE
Q psy14440        516 YFAS-----AGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS-----------SDRTIRLWDCVTGSHV  579 (711)
Q Consensus       516 ~l~s-----gs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs-----------~Dg~I~iwD~~~~~~v  579 (711)
                      .|+.     ++.++++++|.+-.+..+..-.-...+-..+.|++.|++|++-.           ...++.|++++ ++.+
T Consensus       189 ~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-e~~i  267 (561)
T COG5354         189 ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-ERSI  267 (561)
T ss_pred             eEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec-cccc
Confidence            3443     35788999999987776665444444455788999999876532           13568888887 4445


Q ss_pred             EEeeCCCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC---CcEEE
Q psy14440        580 RLLTGHKAPVYALSFSVCGRFLASAG--GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQD---CSVKL  654 (711)
Q Consensus       580 ~~~~~h~~~I~~la~spdg~~Lasgs--~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D---g~V~i  654 (711)
                      +....-.++|...+|.|.++.+++.+  .+-.+.++|++.. +...  .....=+.+.|+|.+++++.+|-|   |.|-+
T Consensus       268 ~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i  344 (561)
T COG5354         268 PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEI  344 (561)
T ss_pred             ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccceEE
Confidence            55446789999999999988766544  6789999999765 3333  334445678999999999998876   67999


Q ss_pred             EeCCC
Q psy14440        655 WDFAK  659 (711)
Q Consensus       655 Wdl~~  659 (711)
                      ||...
T Consensus       345 ~~~~~  349 (561)
T COG5354         345 FDPAG  349 (561)
T ss_pred             eccCC
Confidence            99764

>KOG1409|consensus

Probab=99.11  E-value=2.4e-09  Score=108.77  Aligned_cols=227  Identities=22%  Similarity=0.303  Sum_probs=168.3

Q ss_pred             cccccCCcEEEEEecC-CCeeEEEee-cccCCEEEEEEcCCCCEEEEEeCCCeEEEEEC----CCCeEEEEEecCCCCEE
Q psy14440        433 IEMECDDILVRIMDER-NAETTRTLV-GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL----LLWRCLVVYKGHGHPVW  506 (711)
Q Consensus       433 l~~~~~d~~i~i~d~~-~~~~~~~l~-~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl----~t~~~~~~~~~h~~~V~  506 (711)
                      +...+.|..+++|-.. .++.-..+. .-..+++++.+..+.+.|++|-..|++.-+.+    +.....+.+..|...|.
T Consensus        39 v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~  118 (404)
T KOG1409|consen   39 VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVS  118 (404)
T ss_pred             eEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhccee
Confidence            3345667888888543 333222221 12457899999999999999999999998876    34455677788999999


Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC--CCCcEEEEeeC
Q psy14440        507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDC--VTGSHVRLLTG  584 (711)
Q Consensus       507 ~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~--~~~~~v~~~~~  584 (711)
                      .+.|+-....+++.+.|..+..--.+.+..+..+.- ...-+++.+.-.  +.+.|...|.|.+-.+  ..-..+..+.+
T Consensus       119 ~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~  195 (404)
T KOG1409|consen  119 AIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNG  195 (404)
T ss_pred             eEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcC
Confidence            999999889999999998887666665544332210 011112222111  5666666676665443  44566888999


Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        585 HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGH-LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       585 h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~-~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      |.+.+++++|.+..+.|++|..|.+|.+||+.-++ ...++.+|...|..++....-+.|++++.||.|.+||++..-.
T Consensus       196 h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  196 HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence            99999999999999999999999999999997654 3467789999999998888888999999999999999986443

>KOG0309|consensus

Probab=99.10  E-value=7.8e-10  Score=121.27  Aligned_cols=289  Identities=17%  Similarity=0.288  Sum_probs=187.8

Q ss_pred             ccCCCCCCceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCC--cee-----------eeccC--cccccc
Q psy14440        369 TLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQ--KLK-----------AMKSS--DQLQDI  433 (711)
Q Consensus       369 ~l~~~~lps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~--~~~-----------~~~~~--~~~~~l  433 (711)
                      ..|+-..|..--.-...-.+.+.++.++|.|+-+|.++.-| +.+-|++..  ..+           ...++  +.-...
T Consensus         6 ~~gpyns~tf~kslsl~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~w   84 (1081)
T KOG0309|consen    6 NEGPYNSPTFGKSLSLKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYW   84 (1081)
T ss_pred             ccCCCCCCccCceeEEEecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCcee
Confidence            33444444443333455668899999999999999988877 444455321  111           01111  111112


Q ss_pred             ccccCCcEEEEEecC---CCeeEEEeecccCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe-EEEEEecCCCCEEEE
Q psy14440        434 EMECDDILVRIMDER---NAETTRTLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLLLWR-CLVVYKGHGHPVWDI  508 (711)
Q Consensus       434 ~~~~~d~~i~i~d~~---~~~~~~~l~~h~~~V~~l~fspdg-~~L~s~s~Dg~V~iwdl~t~~-~~~~~~~h~~~V~~v  508 (711)
                      ++........+|+..   +......+.||+..|+.+.|.+.. ..|++|+.|..|..||+++-. .+..+..-......|
T Consensus        85 iVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqV  164 (1081)
T KOG0309|consen   85 IVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQV  164 (1081)
T ss_pred             EEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCcee
Confidence            222333334456542   333445677999999999999865 478999999999999998643 344444445566789


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCC-ceeEEeecCCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEE--EEeeC
Q psy14440        509 KFSPHGYYFASAGHDRMARLWATDSY-HPLRLFVGHYSDVDCVQFHPN-SNYVATGSSDRTIRLWDCVTGSHV--RLLTG  584 (711)
Q Consensus       509 ~~sp~g~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~h~~~V~~v~~sp~-~~~latgs~Dg~I~iwD~~~~~~v--~~~~~  584 (711)
                      +|+-....+.+.++.+.|++||++.+ .++..+++|...|+.+.|..- ...+.+++.||+|+.||.......  +.. .
T Consensus       165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-t  243 (1081)
T KOG0309|consen  165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-T  243 (1081)
T ss_pred             eecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-c
Confidence            99886656667778889999999876 577788899999999998752 345788899999999998654322  222 2


Q ss_pred             CCCCeEEEEEecCCC--EEEEEeCCCcEEE---------EECCC-CeEEEEeeCCCCCEEEEEEeCCC----------CE
Q psy14440        585 HKAPVYALSFSVCGR--FLASAGGDGNVHM---------WDLSN-GHLLTLLTGHTDVVRALCFSRDG----------NI  642 (711)
Q Consensus       585 h~~~I~~la~spdg~--~Lasgs~Dg~I~i---------wDl~s-g~~i~~l~~h~~~V~sl~fspdg----------~~  642 (711)
                      .+.+|..-.+-|-|+  ++.-.-.+..|.+         |+..+ .+.+..+.||.+.|....|-..+          -.
T Consensus       244 t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQ  323 (1081)
T KOG0309|consen  244 TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQ  323 (1081)
T ss_pred             ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcccee
Confidence            344555555555333  2221111223333         44333 35789999999988777664422          26


Q ss_pred             EEEEeCCCcEEEEeCCC
Q psy14440        643 LASSGQDCSVKLWDFAK  659 (711)
Q Consensus       643 Lasgs~Dg~V~iWdl~~  659 (711)
                      |++-+.|.++|+|-+..
T Consensus       324 LVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  324 LVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             EEEeecCCceEeeeccH
Confidence            99999999999999864

>KOG0280|consensus

Probab=99.10  E-value=7.5e-09  Score=103.23  Aligned_cols=202  Identities=16%  Similarity=0.104  Sum_probs=146.4

Q ss_pred             CCEEEEEEcC---CCC-EEEEEeCCCeEEEEECCCCeEEEEEecCC------CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q psy14440        461 GPVRKLSFSP---DRS-LLLSCSQDNTIRLWSLLLWRCLVVYKGHG------HPVWDIKFSPHGYYFASAGHDRMARLWA  530 (711)
Q Consensus       461 ~~V~~l~fsp---dg~-~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~------~~V~~v~~sp~g~~l~sgs~Dg~i~lwd  530 (711)
                      ..+..+.|+.   +|. .|+-+..+|.|.++..........+++-.      ....++.|++.+..++++..+|.+.+-+
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~  149 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY  149 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence            3456666653   444 56677778999999876555554444321      1245788999999999999999999666


Q ss_pred             CCCCce--eEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECC-CCcEEEE-eeCCCCCeEEEEEec-CCCEEEEE
Q psy14440        531 TDSYHP--LRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCV-TGSHVRL-LTGHKAPVYALSFSV-CGRFLASA  604 (711)
Q Consensus       531 ~~~~~~--~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~-~~~~v~~-~~~h~~~I~~la~sp-dg~~Lasg  604 (711)
                      ......  ++.++.|.-.+....|+- +.+.+.+|+.|+.+..||++ .++.+.. .+-|...|.+|.-+| .+.+|++|
T Consensus       150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG  229 (339)
T KOG0280|consen  150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG  229 (339)
T ss_pred             cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence            554433  347888999999999976 45789999999999999999 3444333 456889999998886 58899999


Q ss_pred             eCCCcEEEEECCC-CeEEEEeeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCCCc
Q psy14440        605 GGDGNVHMWDLSN-GHLLTLLTGHTDVVRALCFSRDGN-ILASSGQDCSVKLWDFAKLSDE  663 (711)
Q Consensus       605 s~Dg~I~iwDl~s-g~~i~~l~~h~~~V~sl~fspdg~-~Lasgs~Dg~V~iWdl~~~~~~  663 (711)
                      +.|-.|++||.++ ++.+..-. -.+.|+.+.++|.-. .|+.++.-+-.+|-+++....+
T Consensus       230 sYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e  289 (339)
T KOG0280|consen  230 SYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE  289 (339)
T ss_pred             ccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccc
Confidence            9999999999984 66665443 247899999998432 3334445556777777664443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.10  E-value=4.8e-08  Score=117.30  Aligned_cols=241  Identities=17%  Similarity=0.229  Sum_probs=162.4

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEE
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRK  465 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~  465 (711)
                      ..+.|.++.|-.|...++.+..+|.|.+...+...                            ....+.....-.+.|.+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~----------------------------~~~~~E~VG~vd~GI~a  125 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDP----------------------------DEDEIEIVGSVDSGILA  125 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCC----------------------------CCceeEEEEEEcCcEEE
Confidence            44678899999999999999999988888332100                            00111111223567999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeEE------------------------EEEec---------------------
Q psy14440        466 LSFSPDRSLLLSCSQDNTIRLWSLLLWRCL------------------------VVYKG---------------------  500 (711)
Q Consensus       466 l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~------------------------~~~~~---------------------  500 (711)
                      ++||||+..|+..+.+++|.+.+- ++..+                        ..|+|                     
T Consensus       126 ~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~  204 (928)
T PF04762_consen  126 ASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEG  204 (928)
T ss_pred             EEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccC
Confidence            999999999999999999887643 11111                        11111                     


Q ss_pred             ---CCCCEEEEEEcCCCCEEEEEEC------CCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEc---CCcE
Q psy14440        501 ---HGHPVWDIKFSPHGYYFASAGH------DRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS---DRTI  568 (711)
Q Consensus       501 ---h~~~V~~v~~sp~g~~l~sgs~------Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~---Dg~I  568 (711)
                         +...-..|+|-.||.|||+.+-      -+.+|||+-+ |....+...-.+--.+++|.|.|++||+...   ...|
T Consensus       205 ~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~V  283 (928)
T PF04762_consen  205 KLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDV  283 (928)
T ss_pred             ccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEE
Confidence               1223457899999999999874      2689999877 4433333323333458899999999998764   3456


Q ss_pred             EEEECCCCcEEEEeeC----CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE--EEEeeCC-CCCEEEEEEeCC-C
Q psy14440        569 RLWDCVTGSHVRLLTG----HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL--LTLLTGH-TDVVRALCFSRD-G  640 (711)
Q Consensus       569 ~iwD~~~~~~v~~~~~----h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~--i~~l~~h-~~~V~sl~fspd-g  640 (711)
                      .+|. ++|-....|.-    ....|..++|+.|+..||....|. |.+|...+..-  ..++... ...+..+.|++. .
T Consensus       284 vFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p  361 (928)
T PF04762_consen  284 VFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP  361 (928)
T ss_pred             EEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence            7776 56655555543    456799999999999999987664 99999988653  2333322 234556999995 4


Q ss_pred             CEEEEEeCCCcEEEEeCC
Q psy14440        641 NILASSGQDCSVKLWDFA  658 (711)
Q Consensus       641 ~~Lasgs~Dg~V~iWdl~  658 (711)
                      ..|..++.+|.+..+++.
T Consensus       362 ~~L~v~t~~g~~~~~~~~  379 (928)
T PF04762_consen  362 LRLHVLTSNGQYEIYDFA  379 (928)
T ss_pred             CEEEEEecCCcEEEEEEE
Confidence            467777777877665553

>KOG2315|consensus

Probab=99.07  E-value=1.1e-07  Score=102.47  Aligned_cols=267  Identities=16%  Similarity=0.180  Sum_probs=168.1

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce---------eeeccCcccccccc----------ccCCcEEEEEec
Q psy14440        387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKL---------KAMKSSDQLQDIEM----------ECDDILVRIMDE  447 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~---------~~~~~~~~~~~l~~----------~~~d~~i~i~d~  447 (711)
                      ...++..++|++|+++|.+.. ..|+|++......         ..+.++..+..+..          ......+.+|+.
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v  112 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV  112 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence            344778899999999988764 5688888766531         11222222222211          111234667887


Q ss_pred             CCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCC--CEEEE-----E
Q psy14440        448 RNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG--YYFAS-----A  520 (711)
Q Consensus       448 ~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g--~~l~s-----g  520 (711)
                      .++.....+......-++..|+.|..+.+- -..+.|.+|++...+.+. -+-|...|..+.+||.+  ..+|+     .
T Consensus       113 et~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k  190 (566)
T KOG2315|consen  113 ETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKK  190 (566)
T ss_pred             ccceehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCC
Confidence            774443333322222268899988764332 233569999997644332 23467889999999963  23333     3


Q ss_pred             ECCCeEEEEECCCCce-----eEEeecCCCCeeEEEEcCCCCEE-EEEE--cC---------CcEEEEECCCCcEEEEee
Q psy14440        521 GHDRMARLWATDSYHP-----LRLFVGHYSDVDCVQFHPNSNYV-ATGS--SD---------RTIRLWDCVTGSHVRLLT  583 (711)
Q Consensus       521 s~Dg~i~lwd~~~~~~-----~~~~~~h~~~V~~v~~sp~~~~l-atgs--~D---------g~I~iwD~~~~~~v~~~~  583 (711)
                      |.-+.|+||..-....     .+.|  ...+-..+.|++-|.-| +..+  -|         .++++.+++ |.....--
T Consensus       191 GaPa~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L  267 (566)
T KOG2315|consen  191 GAPASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPL  267 (566)
T ss_pred             CCCcEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEec
Confidence            5567899997752211     1222  23444567787766532 2222  23         368888887 44333333


Q ss_pred             CCCCCeEEEEEecCCCEEEEE--eCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC---CcEEEEeCC
Q psy14440        584 GHKAPVYALSFSVCGRFLASA--GGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQD---CSVKLWDFA  658 (711)
Q Consensus       584 ~h~~~I~~la~spdg~~Lasg--s~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D---g~V~iWdl~  658 (711)
                      ...++|.+++|+++|+-++++  -.-.++.|||++ +..+..+.  .++=+++-|+|.|++|+.+|-+   |.|-|||+.
T Consensus       268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence            357999999999999877654  355689999985 56665553  4666889999999999998864   789999998


Q ss_pred             CCCC
Q psy14440        659 KLSD  662 (711)
Q Consensus       659 ~~~~  662 (711)
                      +.+.
T Consensus       345 n~K~  348 (566)
T KOG2315|consen  345 NRKL  348 (566)
T ss_pred             chhh
Confidence            7443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.07  E-value=3.5e-07  Score=94.35  Aligned_cols=207  Identities=17%  Similarity=0.207  Sum_probs=145.0

Q ss_pred             eecccCCEEEEEEcCCCCEEEEEeCC---CeEEEEECCC--CeEEE--EEecCCCCEEEEEEcCCCCEEEEEE-CCCeEE
Q psy14440        456 LVGHEGPVRKLSFSPDRSLLLSCSQD---NTIRLWSLLL--WRCLV--VYKGHGHPVWDIKFSPHGYYFASAG-HDRMAR  527 (711)
Q Consensus       456 l~~h~~~V~~l~fspdg~~L~s~s~D---g~V~iwdl~t--~~~~~--~~~~h~~~V~~v~~sp~g~~l~sgs-~Dg~i~  527 (711)
                      +..+.+..+-|+|++++++|+++..+   |.|..|.++.  |+...  .......+-+.++++++|++++++. ..|.|.
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            34567788999999999999998654   6788887764  44322  1222233447899999999888887 568899


Q ss_pred             EEECCC-Ccee--EEeecCCCC----------eeEEEEcCCCCEEEEEEc-CCcEEEEECCCCcEEEEee---CCCCCeE
Q psy14440        528 LWATDS-YHPL--RLFVGHYSD----------VDCVQFHPNSNYVATGSS-DRTIRLWDCVTGSHVRLLT---GHKAPVY  590 (711)
Q Consensus       528 lwd~~~-~~~~--~~~~~h~~~----------V~~v~~sp~~~~latgs~-Dg~I~iwD~~~~~~v~~~~---~h~~~I~  590 (711)
                      ++-++. +...  ..+..|.+.          +.+..+.|++++|++.+- .-.|.+|++..|.....-.   ...+.-.
T Consensus       115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR  194 (346)
T COG2706         115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR  194 (346)
T ss_pred             EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence            998865 3222  122335555          889999999999998763 3469999999876533211   3455678


Q ss_pred             EEEEecCCCEEEEEe-CCCcEEEEECCCC-eEEEEeeC-------C--CCCEEEEEEeCCCCEEEEEeC-CCcEEEEeCC
Q psy14440        591 ALSFSVCGRFLASAG-GDGNVHMWDLSNG-HLLTLLTG-------H--TDVVRALCFSRDGNILASSGQ-DCSVKLWDFA  658 (711)
Q Consensus       591 ~la~spdg~~Lasgs-~Dg~I~iwDl~sg-~~i~~l~~-------h--~~~V~sl~fspdg~~Lasgs~-Dg~V~iWdl~  658 (711)
                      .|+|+|+|++....+ -+++|.+|..... ..+..+..       .  ......|..++||++|.++.. ...|.+|.+.
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            899999999988766 4889999998773 22222221       1  235678889999999998753 3478888887


Q ss_pred             CCCC
Q psy14440        659 KLSD  662 (711)
Q Consensus       659 ~~~~  662 (711)
                      ....
T Consensus       275 ~~~g  278 (346)
T COG2706         275 PDGG  278 (346)
T ss_pred             CCCC
Confidence            6544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=6.9e-08  Score=106.82  Aligned_cols=209  Identities=12%  Similarity=0.020  Sum_probs=136.2

Q ss_pred             EEEEEecCCCeeEEEeecccCCEEEEEEcCCCCE-EEEEeC---CCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCE
Q psy14440        441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSL-LLSCSQ---DNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYY  516 (711)
Q Consensus       441 ~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~-L~s~s~---Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~  516 (711)
                      .+.+.|..... .+.+... +.+....|+|||+. ++..+.   +..|.++|+.+++...... ..+......|+|||+.
T Consensus       170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        170 NIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK  246 (419)
T ss_pred             eEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence            45555543333 3333333 37889999999985 554443   3569999998887665544 4555667889999987


Q ss_pred             EEEEE-C--CCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCcEEEEeeCCCCCeE
Q psy14440        517 FASAG-H--DRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD-R--TIRLWDCVTGSHVRLLTGHKAPVY  590 (711)
Q Consensus       517 l~sgs-~--Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D-g--~I~iwD~~~~~~v~~~~~h~~~I~  590 (711)
                      ++... .  +..|.++++.++...+ +..+........|+|||+.|+..+.. +  .|.++|+.+++..+......   .
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~  322 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---N  322 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---c
Confidence            66543 3  3567778888776444 43333334456899999988877642 2  68888998887655443211   1


Q ss_pred             EEEEecCCCEEEEEeCC---------CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC-Cc--EEEEeCC
Q psy14440        591 ALSFSVCGRFLASAGGD---------GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQD-CS--VKLWDFA  658 (711)
Q Consensus       591 ~la~spdg~~Lasgs~D---------g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D-g~--V~iWdl~  658 (711)
                      ...|||||++|+..+..         ..|.+.|+.++... .+... +.....+|+|||+.|+..+.+ +.  +.+.++.
T Consensus       323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence            24899999998876543         36888898887653 33322 233468999999987766543 33  4455554

>KOG2314|consensus

Probab=99.04  E-value=4.1e-08  Score=105.23  Aligned_cols=268  Identities=15%  Similarity=0.166  Sum_probs=174.8

Q ss_pred             CceEEEEECCCCCEEEEEeC-----------CCeEEEEeCCCCceeee--------------ccCccccccccccCCcEE
Q psy14440        388 QQVTCAEISEDVSILAVGFS-----------ESYIKLWSLVPQKLKAM--------------KSSDQLQDIEMECDDILV  442 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~-----------dg~I~vWdl~~~~~~~~--------------~~~~~~~~l~~~~~d~~i  442 (711)
                      -.|.-+.|||..++|+|-+.           ...++|||+.++.+..-              .++.+...++-- ....|
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm-~~~si  328 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM-TGNSI  328 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEe-ccceE
Confidence            46888999999999998553           24799999988765432              122222222221 22567


Q ss_pred             EEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEE
Q psy14440        443 RIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQD-----NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYF  517 (711)
Q Consensus       443 ~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~D-----g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l  517 (711)
                      .|++..+......-.-.-..|....|+|.++.||--+..     ..+.+-.+.+++.+++-.-|+-.=..+-|-.+|.||
T Consensus       329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL  408 (698)
T KOG2314|consen  329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL  408 (698)
T ss_pred             EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence            777765543332222234568889999999888765432     457788888888887766665555567788888888


Q ss_pred             EEEEC----------CCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEc---CCcEEEEECCC-Cc---EEE
Q psy14440        518 ASAGH----------DRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS---DRTIRLWDCVT-GS---HVR  580 (711)
Q Consensus       518 ~sgs~----------Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~---Dg~I~iwD~~~-~~---~v~  580 (711)
                      +.--.          -..+-|+.++....-.....-...|...+|-|.|+.+++-+.   ..++.+|-+.+ +.   .+.
T Consensus       409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk  488 (698)
T KOG2314|consen  409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK  488 (698)
T ss_pred             EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence            76431          112444545443322222234567889999999998887664   35788998773 22   233


Q ss_pred             EeeCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCCCeEEEEe-eCCCCCEEEEEEeCCCCEEEEEeC------CC
Q psy14440        581 LLTGHKAPVYALSFSVCGRFLASAG---GDGNVHMWDLSNGHLLTLL-TGHTDVVRALCFSRDGNILASSGQ------DC  650 (711)
Q Consensus       581 ~~~~h~~~I~~la~spdg~~Lasgs---~Dg~I~iwDl~sg~~i~~l-~~h~~~V~sl~fspdg~~Lasgs~------Dg  650 (711)
                      .+.  ....+.+.|+|.|++++.+.   ..|.+.++|+....+...- ..| ...+.+.|.|.|+|+++++.      |.
T Consensus       489 ~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~  565 (698)
T KOG2314|consen  489 ELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDN  565 (698)
T ss_pred             hhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhcccc
Confidence            332  35568899999999998764   5689999998743322221 123 34578899999999999875      55


Q ss_pred             cEEEEeCCC
Q psy14440        651 SVKLWDFAK  659 (711)
Q Consensus       651 ~V~iWdl~~  659 (711)
                      .-+||++..
T Consensus       566 GYri~tfqG  574 (698)
T KOG2314|consen  566 GYRIFTFQG  574 (698)
T ss_pred             ceEEEEeec
Confidence            678888753

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.04  E-value=2.5e-07  Score=111.24  Aligned_cols=271  Identities=14%  Similarity=0.156  Sum_probs=165.0

Q ss_pred             cCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCcc----ccccccccCCcEEEE------------EecC
Q psy14440        385 NARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQ----LQDIEMECDDILVRI------------MDER  448 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~----~~~l~~~~~d~~i~i------------~d~~  448 (711)
                      .-..+|.|++||||+.+||..+.++.|.+-+.+-..+.......+    ...+.+|-+...-++            -+..
T Consensus       118 ~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  118 SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            345799999999999999999999998887643322222111110    011111111000000            0000


Q ss_pred             CC-eeEEEeecccCCEEEEEEcCCCCEEEEEeC---C---CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE
Q psy14440        449 NA-ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQ---D---NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG  521 (711)
Q Consensus       449 ~~-~~~~~l~~h~~~V~~l~fspdg~~L~s~s~---D---g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs  521 (711)
                      .. .....+. +...-..++|-.||.++++.+.   .   ..+|||+-+ |....+-..-.+--.+++|.|.|++||+..
T Consensus       198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q  275 (928)
T PF04762_consen  198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQ  275 (928)
T ss_pred             CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence            00 0011222 4445678999999999998875   3   469999976 554444433333345689999999999886


Q ss_pred             C---CCeEEEEECCCCceeEEee----cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE--EEEee-CCCCCeEE
Q psy14440        522 H---DRMARLWATDSYHPLRLFV----GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH--VRLLT-GHKAPVYA  591 (711)
Q Consensus       522 ~---Dg~i~lwd~~~~~~~~~~~----~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~--v~~~~-~h~~~I~~  591 (711)
                      .   ...|.+|.-+. -.-..|.    .....|..+.|+.++..||....|. |.+|-..+..-  .+.+. .....+..
T Consensus       276 ~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~  353 (928)
T PF04762_consen  276 RLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNF  353 (928)
T ss_pred             EcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCc
Confidence            4   34566665432 2222222    3456799999999999999988665 99998766431  12222 12334555


Q ss_pred             EEEecC-CCEEEEEeCCCcEEEEEC----CCC--------eEEEEee-----------------------CCCCCEEEEE
Q psy14440        592 LSFSVC-GRFLASAGGDGNVHMWDL----SNG--------HLLTLLT-----------------------GHTDVVRALC  635 (711)
Q Consensus       592 la~spd-g~~Lasgs~Dg~I~iwDl----~sg--------~~i~~l~-----------------------~h~~~V~sl~  635 (711)
                      +.|++. ...|..++.+|.+..+++    ..+        ..+..+.                       .....|.+++
T Consensus       354 ~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~va  433 (928)
T PF04762_consen  354 VKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVA  433 (928)
T ss_pred             eEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEE
Confidence            889884 445666666566655443    111        0111111                       1246799999


Q ss_pred             EeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        636 FSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       636 fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      |++++..+++-..||+|.+|....
T Consensus       434 f~~~~~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  434 FSPSNSRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             EeCCCCeEEEEECCCCEEEEEecC
Confidence            999998899999999999998654

>KOG4532|consensus

Probab=99.02  E-value=5.7e-08  Score=95.81  Aligned_cols=231  Identities=14%  Similarity=0.049  Sum_probs=152.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEE-cCCCCEEE
Q psy14440        398 DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSF-SPDRSLLL  476 (711)
Q Consensus       398 dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~f-spdg~~L~  476 (711)
                      ...+||.|+..|...+|...+...                   ..++.|.           |...|+-+.= ......+.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~-------------------h~~~cd~-----------snn~v~~~~r~cd~~~~~~  132 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDG-------------------HLYQCDV-----------SNNDVTLVKRYCDLKFPLN  132 (344)
T ss_pred             cccEEEeccccceeeeecccCccc-------------------ceeeecc-----------cccchhhhhhhccccccee
Confidence            446889999999999998865432                   2222221           1111111110 11122467


Q ss_pred             EEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC--ceeEEe-ecCCCCeeEEEEc
Q psy14440        477 SCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY--HPLRLF-VGHYSDVDCVQFH  553 (711)
Q Consensus       477 s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~--~~~~~~-~~h~~~V~~v~~s  553 (711)
                      .++.|.++++.++..+..-.......-.+.++.++++++++++.+....|..|.++..  ..+++. ......-.+..|+
T Consensus       133 i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s  212 (344)
T KOG4532|consen  133 IASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS  212 (344)
T ss_pred             eccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec
Confidence            7788888888888654433322222234888999999999999999999999988653  233322 2333445688999


Q ss_pred             CCCCEEEEEEcCCcEEEEECCCCcEEEEe-----eCCCCCeEEEEEecCCC--EEEEEeCCCcEEEEECCCCeEEEEee-
Q psy14440        554 PNSNYVATGSSDRTIRLWDCVTGSHVRLL-----TGHKAPVYALSFSVCGR--FLASAGGDGNVHMWDLSNGHLLTLLT-  625 (711)
Q Consensus       554 p~~~~latgs~Dg~I~iwD~~~~~~v~~~-----~~h~~~I~~la~spdg~--~Lasgs~Dg~I~iwDl~sg~~i~~l~-  625 (711)
                      .+...+|+++.||++.|||++.......+     ..|++.+..+.|++.|.  +|+..-.-+.+.+.|+++++....+. 
T Consensus       213 ~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i  292 (344)
T KOG4532|consen  213 ENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI  292 (344)
T ss_pred             cCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence            99999999999999999999875433222     25899999999998664  44444455789999999987665543 


Q ss_pred             ------CCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        626 ------GHT-DVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       626 ------~h~-~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                            .|. ..|..-.|+.++.-+.+.+++ .+.=|++.+
T Consensus       293 ~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  293 PDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             CccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence                  233 337777888877766666554 444555543

>KOG2041|consensus

Probab=99.01  E-value=2.9e-08  Score=108.72  Aligned_cols=245  Identities=15%  Similarity=0.176  Sum_probs=175.4

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      .++.||++.|.-+.|+...+.|-+...+|.|.||-+-.+....-.       +            +          ....
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM-------i------------N----------nRnK  115 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM-------I------------N----------NRNK  115 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH-------h------------h----------CcCc
Confidence            368999999999999999999999999999999987433211000       0            0          0124


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE-EEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc----
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV-VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH----  535 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~-~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~----  535 (711)
                      ..|.+++|+.||..++..-.||.|.+=+++..+... .++  ..-...+.|++|.+.++.+-..|.+.+||....-    
T Consensus       116 SvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl  193 (1189)
T KOG2041|consen  116 SVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKL  193 (1189)
T ss_pred             cEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhh
Confidence            568899999999999999999998887776433221 122  2233468899999999999899999999986531    


Q ss_pred             ---eeE----EeecCCCCeeEEEEc--------CCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCE
Q psy14440        536 ---PLR----LFVGHYSDVDCVQFH--------PNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRF  600 (711)
Q Consensus       536 ---~~~----~~~~h~~~V~~v~~s--------p~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~  600 (711)
                         +..    .+......|-.+.|.        |+.-.|+++-..|.+.|..-.+......+. ....|..+.|+++|..
T Consensus       194 ~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~v  272 (1189)
T KOG2041|consen  194 EKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAV  272 (1189)
T ss_pred             hhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcE
Confidence               111    122222336666664        366789999999988876544333222332 2267889999999999


Q ss_pred             EEEEeCC---------CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        601 LASAGGD---------GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       601 Lasgs~D---------g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ||++|.+         +.|.+|. .-|+.+..++.....|++++|-..|-.++.+ .|+.|.+=+++-
T Consensus       273 LAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP  338 (1189)
T KOG2041|consen  273 LAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRP  338 (1189)
T ss_pred             EEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence            9999864         2566665 4688899999888999999998777777765 488888877763

>KOG1924|consensus

Probab=99.01  E-value=5.2e-10  Score=123.25  Aligned_cols=11  Identities=27%  Similarity=0.271  Sum_probs=5.0

Q ss_pred             HHHHHHHHHhC
Q psy14440        175 LVHMYIELVYN  185 (711)
Q Consensus       175 f~~~yl~lv~~  185 (711)
                      |-.-|-+.|.+
T Consensus       786 FKl~fse~vnn  796 (1102)
T KOG1924|consen  786 FKLTFSEQVNN  796 (1102)
T ss_pred             HHhhHHHHHhh
Confidence            44445454443

>KOG1912|consensus

Probab=99.00  E-value=2.9e-08  Score=109.83  Aligned_cols=239  Identities=15%  Similarity=0.155  Sum_probs=179.2

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEc
Q psy14440        390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFS  469 (711)
Q Consensus       390 V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fs  469 (711)
                      -.+++|++.| +||.|+... |.|-                               |..+.+.+..+..|...|+.+.|.
T Consensus        18 ~~A~Dw~~~G-LiAygshsl-V~VV-------------------------------Ds~s~q~iqsie~h~s~V~~VrWa   64 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSHSL-VSVV-------------------------------DSRSLQLIQSIELHQSAVTSVRWA   64 (1062)
T ss_pred             ccccccCccc-eEEEecCce-EEEE-------------------------------ehhhhhhhhccccCccceeEEEec
Confidence            6678888876 777776532 4443                               445566677788899999999998


Q ss_pred             CCC------------CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcC---CC-CEEEEEECCCeEEEEECCC
Q psy14440        470 PDR------------SLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP---HG-YYFASAGHDRMARLWATDS  533 (711)
Q Consensus       470 pdg------------~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp---~g-~~l~sgs~Dg~i~lwd~~~  533 (711)
                      |-.            -.|+++...|.|.+||...+..+..+..|..++.+++|-+   +. ..++.-....++.+|+.++
T Consensus        65 p~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt  144 (1062)
T KOG1912|consen   65 PAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT  144 (1062)
T ss_pred             cCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence            721            2567777789999999999999999999999999999977   33 4666667788999999999


Q ss_pred             CceeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCC-------CcEEEEeeCCCC------------C-----
Q psy14440        534 YHPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVT-------GSHVRLLTGHKA------------P-----  588 (711)
Q Consensus       534 ~~~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~-------~~~v~~~~~h~~------------~-----  588 (711)
                      |..+...........|+.+.| +.+.+..-+..|.|.+.+.-.       |+.++.-..|..            .     
T Consensus       145 G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~  224 (1062)
T KOG1912|consen  145 GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP  224 (1062)
T ss_pred             CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence            998888777677788999999 667777777788887776531       333433333322            0     


Q ss_pred             --------eEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCC--EEEEEeCCCcEEEEeCC
Q psy14440        589 --------VYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGN--ILASSGQDCSVKLWDFA  658 (711)
Q Consensus       589 --------I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~--~Lasgs~Dg~V~iWdl~  658 (711)
                              .-.++|+|.-+.++-......+.|+|++-..++....-..+.+.-+.|-|+++  .|+++-.||.+.+|--+
T Consensus       225 ~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  225 ASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             cchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence                    11246677665555555677899999998888888887778888899988765  79999999999999866


Q ss_pred             CCC
Q psy14440        659 KLS  661 (711)
Q Consensus       659 ~~~  661 (711)
                      ...
T Consensus       305 ~~~  307 (1062)
T KOG1912|consen  305 EEP  307 (1062)
T ss_pred             ccC
Confidence            533

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=2.3e-07  Score=102.72  Aligned_cols=184  Identities=13%  Similarity=0.012  Sum_probs=112.9

Q ss_pred             EEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEE-eCC--CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEE
Q psy14440        442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSC-SQD--NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFA  518 (711)
Q Consensus       442 i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~-s~D--g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~  518 (711)
                      |+++|..+++... +....+.+....|+|||+.|+.. +.+  ..|.++|+.++.... +..+........|+|||+.|+
T Consensus       215 Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~  292 (419)
T PRK04043        215 LYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIV  292 (419)
T ss_pred             EEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEE
Confidence            4444444443332 22345566778899999877644 333  568888988776443 333333334568999999877


Q ss_pred             EEEC-CC--eEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcC---------CcEEEEECCCCcEEEEeeCCC
Q psy14440        519 SAGH-DR--MARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD---------RTIRLWDCVTGSHVRLLTGHK  586 (711)
Q Consensus       519 sgs~-Dg--~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D---------g~I~iwD~~~~~~v~~~~~h~  586 (711)
                      ..+. .+  .|.++|+++++..+..... .  ....|+|+|++|+..+..         ..|.+.|+.++.. +.+... 
T Consensus       293 F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-  367 (419)
T PRK04043        293 FVSDRLGYPNIFMKKLNSGSVEQVVFHG-K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-  367 (419)
T ss_pred             EEECCCCCceEEEEECCCCCeEeCccCC-C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-
Confidence            7763 23  6778888887765544321 1  124899999998877653         3688889888865 444432 


Q ss_pred             CCeEEEEEecCCCEEEEEeCCC---cEEEEECCCCeEEEEeeCCCCCEEE
Q psy14440        587 APVYALSFSVCGRFLASAGGDG---NVHMWDLSNGHLLTLLTGHTDVVRA  633 (711)
Q Consensus       587 ~~I~~la~spdg~~Lasgs~Dg---~I~iwDl~sg~~i~~l~~h~~~V~s  633 (711)
                      .......|+|||+.|+..+.++   .|.++++.. .....+....+.+..
T Consensus       368 ~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g-~~~~~l~~~~g~~~~  416 (419)
T PRK04043        368 GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY-NKSFLFPLKVGKIQS  416 (419)
T ss_pred             CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC-CeeEEeecCCCccCC
Confidence            2334688999999887665432   466677643 333334333344433

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.98  E-value=1.5e-06  Score=89.33  Aligned_cols=217  Identities=15%  Similarity=0.139  Sum_probs=145.8

Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEc-
Q psy14440        392 CAEISE-DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFS-  469 (711)
Q Consensus       392 ~l~fs~-dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fs-  469 (711)
                      +.+|.+ ++.++++-...+.|..|+..+....                               . +.. .+ ..++++. 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-------------------------------~-~~~-~~-~~G~~~~~   49 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-------------------------------V-IDL-PG-PNGMAFDR   49 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-------------------------------E-EES-SS-EEEEEEEC
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-------------------------------E-Eec-CC-CceEEEEc
Confidence            567776 7777777777787887777543321                               1 111 11 6677777 


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeEEEEEec-----CCCCEEEEEEcCCCCEEEEEECC--------CeEEEEECCCCce
Q psy14440        470 PDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG-----HGHPVWDIKFSPHGYYFASAGHD--------RMARLWATDSYHP  536 (711)
Q Consensus       470 pdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~-----h~~~V~~v~~sp~g~~l~sgs~D--------g~i~lwd~~~~~~  536 (711)
                      ++ ..|+.+..++ +.++|..+++.......     .....+++++.++|++.++....        |.+..++.+ ++.
T Consensus        50 ~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~  126 (246)
T PF08450_consen   50 PD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV  126 (246)
T ss_dssp             TT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE
T ss_pred             cC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE
Confidence            55 4556666655 66669988866554443     35678899999999977776644        557777777 443


Q ss_pred             eEEeecCCCCeeEEEEcCCCCEEE-EEEcCCcEEEEECCCCcE----EEEe---eCCCCCeEEEEEecCCCEEEEEeCCC
Q psy14440        537 LRLFVGHYSDVDCVQFHPNSNYVA-TGSSDRTIRLWDCVTGSH----VRLL---TGHKAPVYALSFSVCGRFLASAGGDG  608 (711)
Q Consensus       537 ~~~~~~h~~~V~~v~~sp~~~~la-tgs~Dg~I~iwD~~~~~~----v~~~---~~h~~~I~~la~spdg~~Lasgs~Dg  608 (711)
                      . .+.......+.|+|+++++.|+ +-+..+.|..|++.....    .+.+   ....+....+++..+|++.++....+
T Consensus       127 ~-~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~  205 (246)
T PF08450_consen  127 T-VVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG  205 (246)
T ss_dssp             E-EEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT
T ss_pred             E-EEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC
Confidence            3 3333456678999999999776 455678899999863221    2223   22223478899999999888887889


Q ss_pred             cEEEEECCCCeEEEEeeCCCCCEEEEEEe-CCCCEEEEEe
Q psy14440        609 NVHMWDLSNGHLLTLLTGHTDVVRALCFS-RDGNILASSG  647 (711)
Q Consensus       609 ~I~iwDl~sg~~i~~l~~h~~~V~sl~fs-pdg~~Lasgs  647 (711)
                      .|.++|.. |+.+..+......+++++|. ++.+.|+..+
T Consensus       206 ~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  206 RIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            99999976 99988887666689999995 5656555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.98  E-value=3.2e-07  Score=93.40  Aligned_cols=216  Identities=15%  Similarity=0.062  Sum_probs=139.6

Q ss_pred             CcEEEEEecCCCeeEEEeecc--cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCE
Q psy14440        439 DILVRIMDERNAETTRTLVGH--EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYY  516 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h--~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~  516 (711)
                      ++.|..+|..+++.+....--  .+...+. ...++..+++++.++.|..||..+++.+..+.. ...+.... ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence            345556666666666555321  1222211 223566788889999999999999999888875 22221111 223556


Q ss_pred             EEEEECCCeEEEEECCCCceeEEe-ecCCC---CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCC----
Q psy14440        517 FASAGHDRMARLWATDSYHPLRLF-VGHYS---DVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAP----  588 (711)
Q Consensus       517 l~sgs~Dg~i~lwd~~~~~~~~~~-~~h~~---~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~----  588 (711)
                      +++++.++.++.+|..+++.+... .....   ..........+..++++..++.|..+|..+|+.+..+......    
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~  158 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP  158 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence            777778899999999999988874 33211   1122222334788899998999999999999998877654322    


Q ss_pred             ------eEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        589 ------VYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       589 ------I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                            +.+-....++ .++.++.+|.+.-+|+.+|+.+....  ...+.. ....++..|++++.++.|..||+++..
T Consensus       159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence                  1222222345 77777778864444999999764333  222333 145677888888899999999998753

...

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.94  E-value=2.1e-07  Score=113.79  Aligned_cols=156  Identities=15%  Similarity=0.168  Sum_probs=112.6

Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecC---------------CCCEEEEEEcCCCC-EEEEEECCCeE
Q psy14440        464 RKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH---------------GHPVWDIKFSPHGY-YFASAGHDRMA  526 (711)
Q Consensus       464 ~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h---------------~~~V~~v~~sp~g~-~l~sgs~Dg~i  526 (711)
                      ++++|++ ++..+++.+.++.|++||..++.... +.+.               -...+.|+++++|. .+++.+.++.|
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            5899999 55566677778999999998765432 2211               12346799999987 55566677999


Q ss_pred             EEEECCCCceeEEeec---------------------CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee-C
Q psy14440        527 RLWATDSYHPLRLFVG---------------------HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT-G  584 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~~---------------------h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~-~  584 (711)
                      ++||++++.......+                     ....-.+++++++|+.+++.+.+++|++||..++....... +
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G  844 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG  844 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence            9999987653211100                     01124588999999988888889999999998876543321 1


Q ss_pred             ------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q psy14440        585 ------------HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL  620 (711)
Q Consensus       585 ------------h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~  620 (711)
                                  .-.....++++++|+.+++.+.+++|++||+.+++.
T Consensus       845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                        112467899999999888888999999999998865

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.93  E-value=1.2e-06  Score=93.70  Aligned_cols=226  Identities=13%  Similarity=0.116  Sum_probs=136.4

Q ss_pred             ECCCCCEEEEEeC----------CCeEEEEeCCCCceeee------------------ccCcccccccccc-C-CcEEEE
Q psy14440        395 ISEDVSILAVGFS----------ESYIKLWSLVPQKLKAM------------------KSSDQLQDIEMEC-D-DILVRI  444 (711)
Q Consensus       395 fs~dg~~LatG~~----------dg~I~vWdl~~~~~~~~------------------~~~~~~~~l~~~~-~-d~~i~i  444 (711)
                      +|+||+.|.++..          +..|.+||..+.+...-                  ..+.++..+.+.. + +..+.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999998887765          68899999988765422                  1223333333222 2 566677


Q ss_pred             EecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEE-E---EEecCCCCEEE-EEEcC-CCCEE
Q psy14440        445 MDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL-WRCL-V---VYKGHGHPVWD-IKFSP-HGYYF  517 (711)
Q Consensus       445 ~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t-~~~~-~---~~~~h~~~V~~-v~~sp-~g~~l  517 (711)
                      +|..+++.+..+.--. ...-...+.++ +.+ -+.||......+.+ ++.. .   .+.+...++.. -.|.+ +|+++
T Consensus       133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~  209 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPD-CYHIFPTANDT-FFM-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV  209 (352)
T ss_pred             EECCCCcEEEEEeCCC-CcEEEEecCCc-cEE-EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence            7777777666554311 11111222111 111 12344443333321 2111 1   11110011100 03345 77777


Q ss_pred             EEEECCCeEEEEECCC-----CceeEEeec-------CCCCeeEEEEcCCCCEEEEEEc----------CCcEEEEECCC
Q psy14440        518 ASAGHDRMARLWATDS-----YHPLRLFVG-------HYSDVDCVQFHPNSNYVATGSS----------DRTIRLWDCVT  575 (711)
Q Consensus       518 ~sgs~Dg~i~lwd~~~-----~~~~~~~~~-------h~~~V~~v~~sp~~~~latgs~----------Dg~I~iwD~~~  575 (711)
                      .+... |+|.+.|+..     ...+..+..       ..+.+.-++++++++++++...          .+.|.++|..+
T Consensus       210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t  288 (352)
T TIGR02658       210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT  288 (352)
T ss_pred             EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence            66665 9999999543     333333221       2233445999999999888531          25799999999


Q ss_pred             CcEEEEeeCCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEECCCCeEEEEee
Q psy14440        576 GSHVRLLTGHKAPVYALSFSVCGR-FLASAG-GDGNVHMWDLSNGHLLTLLT  625 (711)
Q Consensus       576 ~~~v~~~~~h~~~I~~la~spdg~-~Lasgs-~Dg~I~iwDl~sg~~i~~l~  625 (711)
                      ++.+..+.. ...+..+++++||+ +|++.+ .++.|.++|..+++.++.+.
T Consensus       289 ~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       289 GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            999988773 34789999999999 887666 57889999999999999884

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1832|consensus

Probab=98.91  E-value=5.7e-10  Score=124.22  Aligned_cols=216  Identities=19%  Similarity=0.261  Sum_probs=160.7

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccC
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEG  461 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~  461 (711)
                      +|+.|...-+|++||-+.++|++|+..|.|+++++.++                               .......+|..
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-------------------------------~~e~s~ncH~S 1144 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-------------------------------SMEESVNCHQS 1144 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCc-------------------------------ccccccccccc
Confidence            57889999999999999999999999999999998543                               33445678999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCC--eEEEEECC-CCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeE
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDN--TIRLWSLL-LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLR  538 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg--~V~iwdl~-t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~  538 (711)
                      +|+.+.-+-||..+++.+...  -..+|++. ++...++|.+    -.++.|+.....-+.|+....+.+||+.++.++.
T Consensus      1145 avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ 1220 (1516)
T KOG1832|consen 1145 AVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQ 1220 (1516)
T ss_pred             ccccccccCCcceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHH
Confidence            999999999999887766544  36799985 3445555543    3468898765555666666789999999998776


Q ss_pred             Ee-ec---CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q psy14440        539 LF-VG---HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD  614 (711)
Q Consensus       539 ~~-~~---h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwD  614 (711)
                      ++ .+   ....-+++.|+|....++-   ||  .+||++..+.++.|...+..+ .-.|+|.|.-++.-+.     |||
T Consensus      1221 tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD 1289 (1516)
T KOG1832|consen 1221 TYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWD 1289 (1516)
T ss_pred             HhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhh
Confidence            63 22   2223478899998887764   44  489999988888776444222 2358999999888765     999


Q ss_pred             CCCCeEEEEeeCCCCCEEEEEEeCCCCEEEE
Q psy14440        615 LSNGHLLTLLTGHTDVVRALCFSRDGNILAS  645 (711)
Q Consensus       615 l~sg~~i~~l~~h~~~V~sl~fspdg~~Las  645 (711)
                      +++.+++.....-.  -..+.|+..|++++.
T Consensus      1290 ~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1290 MRTFKLLHSVPSLD--QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred             hHHHHHHhcCcccc--ceEEEeccCccchhh
Confidence            99988876655332  246778887876654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.89  E-value=6.6e-07  Score=94.52  Aligned_cols=238  Identities=14%  Similarity=0.157  Sum_probs=164.7

Q ss_pred             EEeCCCeEEEEe--CCCCceeee---------ccCccccccccccCCcEEEEEecCCCeeEEEeec------ccC-----
Q psy14440        404 VGFSESYIKLWS--LVPQKLKAM---------KSSDQLQDIEMECDDILVRIMDERNAETTRTLVG------HEG-----  461 (711)
Q Consensus       404 tG~~dg~I~vWd--l~~~~~~~~---------~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~------h~~-----  461 (711)
                      ....+|.=.+|+  +++..++.-         ..+.++..|+. ...|.|+++|..+....+.-.+      ...     
T Consensus       241 lsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~  319 (668)
T COG4946         241 LSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVN  319 (668)
T ss_pred             EecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccC
Confidence            344566555554  455444321         11223333433 3467788998766544332222      000     


Q ss_pred             CEEEEE-EcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCC-eEEEEECCCCceeE
Q psy14440        462 PVRKLS-FSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDR-MARLWATDSYHPLR  538 (711)
Q Consensus       462 ~V~~l~-fsp-dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg-~i~lwd~~~~~~~~  538 (711)
                      +..-+. |+. +|.+++..|. |...|.+...+-.+..  +|...|.-..+.-+++-++.|..|| .+-++|.++++.. 
T Consensus       320 pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-  395 (668)
T COG4946         320 PSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-  395 (668)
T ss_pred             HHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-
Confidence            111111 333 6788888876 5677776654444333  5677788888888888999999999 8999999987644 


Q ss_pred             EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCC----cEEEEE
Q psy14440        539 LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG----NVHMWD  614 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg----~I~iwD  614 (711)
                      .+....+.|.++..+++|++++++.....+.++|+.+|+....-+...+-|+.++|+|++++||-+--+|    .|+++|
T Consensus       396 r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklyd  475 (668)
T COG4946         396 RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYD  475 (668)
T ss_pred             EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEe
Confidence            4556788899999999999999999999999999999987655566678899999999999999876655    799999


Q ss_pred             CCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEe
Q psy14440        615 LSNGHLLTLLTGHTDVVRALCFSRDGNILASSG  647 (711)
Q Consensus       615 l~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs  647 (711)
                      +..++...... ..+.=.+-+|.+||++|.--+
T Consensus       476 m~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         476 MDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             cCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence            99888765543 233335678999999776654

>KOG4532|consensus

Probab=98.88  E-value=1.7e-07  Score=92.60  Aligned_cols=201  Identities=15%  Similarity=0.111  Sum_probs=131.0

Q ss_pred             CCeEEEEECCCCe--EEEEEecCCCCEEEEEEcC-----CCCEEEEEECCCeEEEEECCCCcee-EEeecCCCCeeEEEE
Q psy14440        481 DNTIRLWSLLLWR--CLVVYKGHGHPVWDIKFSP-----HGYYFASAGHDRMARLWATDSYHPL-RLFVGHYSDVDCVQF  552 (711)
Q Consensus       481 Dg~V~iwdl~t~~--~~~~~~~h~~~V~~v~~sp-----~g~~l~sgs~Dg~i~lwd~~~~~~~-~~~~~h~~~V~~v~~  552 (711)
                      ...|-+|++-+..  .+..+.+       +.|.|     ...+|+.||..|...+|...+.+.. .....|..+|+-+.-
T Consensus        51 t~sv~i~~~y~N~~~iv~~y~g-------~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r  123 (344)
T KOG4532|consen   51 TISVPINSHYSNPKGIVEFYTG-------MTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR  123 (344)
T ss_pred             eeeeEeccccCCchhhEEeeec-------ccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence            3457777775433  3344433       44444     3358999999999999999866533 333334444432211


Q ss_pred             cC-CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-e-EEEEee-CCC
Q psy14440        553 HP-NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNG-H-LLTLLT-GHT  628 (711)
Q Consensus       553 sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg-~-~i~~l~-~h~  628 (711)
                      .- ...-+..++.|.+++++++..+..-.......-.+.++++++|++++++.++...|..|.+... + .+.... .-+
T Consensus       124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~  203 (344)
T KOG4532|consen  124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS  203 (344)
T ss_pred             hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence            11 2234677888999999988765433333222234889999999999999999999999988653 3 333222 223


Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCe
Q psy14440        629 DVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNI  706 (711)
Q Consensus       629 ~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~  706 (711)
                      +.-.+.+|+.....+|++..||++.|||++...-.+.....                  +=+.|++.|..++||..|.
T Consensus       204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss------------------trp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS------------------TRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc------------------cCCCCCCceEEEEecCCCc
Confidence            44467889999999999999999999999986654433211                  2233667777888886443

>KOG3914|consensus

Probab=98.88  E-value=1.6e-08  Score=105.08  Aligned_cols=157  Identities=15%  Similarity=0.217  Sum_probs=112.3

Q ss_pred             CEEEEEEcCCCCEEEEEECCCeEEEEECCCCce----eEEeecCCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCC
Q psy14440        504 PVWDIKFSPHGYYFASAGHDRMARLWATDSYHP----LRLFVGHYSDVDCVQFHPNSNYVATGSSDR---TIRLWDCVTG  576 (711)
Q Consensus       504 ~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~----~~~~~~h~~~V~~v~~sp~~~~latgs~Dg---~I~iwD~~~~  576 (711)
                      ..+.+..++.++++|++..+....+++++....    +.... -...-+.+.|..+...+..+..-|   .+.+|....+
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            344566677888888888888877777765432    11111 122233444444455555444334   4555555444


Q ss_pred             cEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEe-eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy14440        577 SHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLL-TGHTDVVRALCFSRDGNILASSGQDCSVKLW  655 (711)
Q Consensus       577 ~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l-~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iW  655 (711)
                      . .+.+-||-+-++.++|++|+++|++++.|..|+|-.....-.+..+ -||...|..++.-+ +..|+|||.|++|++|
T Consensus       143 ~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  143 R-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLW  220 (390)
T ss_pred             C-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEE
Confidence            4 4456689999999999999999999999999999888776666665 47999999999875 4569999999999999


Q ss_pred             eCCCCCCc
Q psy14440        656 DFAKLSDE  663 (711)
Q Consensus       656 dl~~~~~~  663 (711)
                      |+.++...
T Consensus       221 d~~sgk~L  228 (390)
T KOG3914|consen  221 DITSGKLL  228 (390)
T ss_pred             ecccCCcc
Confidence            99998765

>KOG3914|consensus

Probab=98.87  E-value=1.5e-08  Score=105.17  Aligned_cols=160  Identities=21%  Similarity=0.233  Sum_probs=112.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eEEEEEecCCCCEEEEEEcCCCCEEE---EEECCCeEEEEECCCC
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW----RCLVVYKGHGHPVWDIKFSPHGYYFA---SAGHDRMARLWATDSY  534 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~----~~~~~~~~h~~~V~~v~~sp~g~~l~---sgs~Dg~i~lwd~~~~  534 (711)
                      .+..+..++++++|+++..+....++++...    +.+..+.. ...-+.+.|..+.....   .++....+.+|....+
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            3445566778888888877777667766432    22322222 12223334433333333   3445566667766653


Q ss_pred             ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEe-eCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy14440        535 HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLL-TGHKAPVYALSFSVCGRFLASAGGDGNVHMW  613 (711)
Q Consensus       535 ~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~-~~h~~~I~~la~spdg~~Lasgs~Dg~I~iw  613 (711)
                       +.+.+.||.+-++.|+|+||+++|+|+..|..||+-....-..+..| -||+.-|..+++-+ +..|++||.|++|++|
T Consensus       143 -~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  143 -RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLW  220 (390)
T ss_pred             -CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEE
Confidence             44556699999999999999999999999999999776655555554 47999999999875 4568999999999999


Q ss_pred             ECCCCeEEEEe
Q psy14440        614 DLSNGHLLTLL  624 (711)
Q Consensus       614 Dl~sg~~i~~l  624 (711)
                      |+.+|+.+..+
T Consensus       221 d~~sgk~L~t~  231 (390)
T KOG3914|consen  221 DITSGKLLDTC  231 (390)
T ss_pred             ecccCCccccc
Confidence            99999887655

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.86  E-value=2.4e-06  Score=85.91  Aligned_cols=188  Identities=19%  Similarity=0.266  Sum_probs=115.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-------CCCCEEEEEEcCCC------CEEEEEECCCeEEEE
Q psy14440        463 VRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG-------HGHPVWDIKFSPHG------YYFASAGHDRMARLW  529 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~-------h~~~V~~v~~sp~g------~~l~sgs~Dg~i~lw  529 (711)
                      =..++||||+..||.+...|+|++||+... .+..+..       -...|..+.|....      ..|++-+.+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            467899999999999999999999999753 3333322       13456777775421      256777788888777


Q ss_pred             ECCC-----CceeEEee---cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEE---ecCC
Q psy14440        530 ATDS-----YHPLRLFV---GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSF---SVCG  598 (711)
Q Consensus       530 d~~~-----~~~~~~~~---~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~---spdg  598 (711)
                      -+..     .+....|.   .+...|.++.++|..+.|++|+....      +++.    -++....+++-..   +|..
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyy  194 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYY  194 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcE
Confidence            6522     22233333   24668999999999888887764322      0000    0011112222111   1111


Q ss_pred             CEEEEEeCCC------cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        599 RFLASAGGDG------NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       599 ~~Lasgs~Dg------~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      +.+ +...|+      +..+|.+-+.+...........|..++.||||+.||+...+|.|.+|++..+..
T Consensus       195 k~v-~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  195 KQV-TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             EEc-cccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence            111 111121      223455444443333333457899999999999999999999999999987654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.85  E-value=6e-06  Score=84.92  Aligned_cols=207  Identities=17%  Similarity=0.159  Sum_probs=138.2

Q ss_pred             EEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEc-CCCCEEEEEECCCeEEEEECCCCceeEEeec
Q psy14440        465 KLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFS-PHGYYFASAGHDRMARLWATDSYHPLRLFVG  542 (711)
Q Consensus       465 ~l~fsp-dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~s-p~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~  542 (711)
                      ++.|.+ ++.++++-...+.|..|+..++.... +....  ...+++. +++ .++.+..++ +.++|..+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            578887 66666666678999999998876644 33222  6677777 565 555555554 45559888755444432


Q ss_pred             -----CCCCeeEEEEcCCCCEEEEEEcC--------CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEE-EEeCCC
Q psy14440        543 -----HYSDVDCVQFHPNSNYVATGSSD--------RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLA-SAGGDG  608 (711)
Q Consensus       543 -----h~~~V~~v~~sp~~~~latgs~D--------g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~La-sgs~Dg  608 (711)
                           .....+.+++.++|++.++....        |.|..++.. ++...... .-...+.|+|+++++.|+ +-+..+
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence                 34567899999999987776643        557778876 55444433 355678999999999776 456678


Q ss_pred             cEEEEECCC--Ce-----EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcccccccccccccccc
Q psy14440        609 NVHMWDLSN--GH-----LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSS  681 (711)
Q Consensus       609 ~I~iwDl~s--g~-----~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~  681 (711)
                      .|..|++..  ++     .+..+....+..-.+++..+|++.++....+.|.++|-.                       
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-----------------------  213 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-----------------------  213 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-----------------------
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-----------------------
Confidence            899999853  21     122223223457899999999998888888999999854                       


Q ss_pred             ccceeeecccCCcceEEEEEc
Q psy14440        682 LAYLVRSYKTKASPLLHLIFS  702 (711)
Q Consensus       682 ~~~~l~~~~t~~~pV~~v~Fs  702 (711)
                       +.++..+......+.+++|.
T Consensus       214 -G~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  214 -GKLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             -SCEEEEEE-SSSSEEEEEEE
T ss_pred             -ccEEEEEcCCCCCEEEEEEE
Confidence             22344444444578899995

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4714|consensus

Probab=98.84  E-value=3.4e-08  Score=97.03  Aligned_cols=165  Identities=19%  Similarity=0.239  Sum_probs=106.4

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      +++..|.+.-.+-+.+--++-+++|+.||.+.+++.+.  ...+.....                           ..|.
T Consensus        83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~--~~~~~~~i~---------------------------~~~~  133 (319)
T KOG4714|consen   83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK--DLALMSRIP---------------------------SIHS  133 (319)
T ss_pred             eeeeccCCCCCcccccccCCceEecCCCceEEEEechH--HHhhhhhcc---------------------------cccc
Confidence            34445555555556666778899999999999998753  111110000                           0011


Q ss_pred             CCEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCeEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Q psy14440        461 GPVRKLSFSPDRSLLLSCS-----QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s-----~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      +. .+.+....++++.++.     .-+..++|+++..+.+..-+.....|.+++-+| ..+.+++|+.||.+.+||.+..
T Consensus       134 ~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~  212 (319)
T KOG4714|consen  134 GS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV  212 (319)
T ss_pred             cc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc
Confidence            11 1111222333333322     123466777764443333222334488899888 4568888999999999999876


Q ss_pred             c-eeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCC
Q psy14440        535 H-PLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVT  575 (711)
Q Consensus       535 ~-~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~  575 (711)
                      . +...+..|...+..+.||| ++..|++++.||.+..||..+
T Consensus       213 ~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  213 AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            3 4455678999999999999 788999999999999999765

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.81  E-value=6.5e-06  Score=85.20  Aligned_cols=227  Identities=19%  Similarity=0.227  Sum_probs=155.9

Q ss_pred             eEEEEECC-CCCEEEEEeCCC-eEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEE
Q psy14440        390 VTCAEISE-DVSILAVGFSES-YIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLS  467 (711)
Q Consensus       390 V~~l~fs~-dg~~LatG~~dg-~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~  467 (711)
                      ...++.+| ++..+|.+-.-| ...+||..++........                       ..-+.|.||      -.
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-----------------------~~gRHFyGH------g~   57 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-----------------------PPGRHFYGH------GV   57 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-----------------------CCCCEEecC------EE
Confidence            34677788 556667776655 356777765554322111                       112455666      47


Q ss_pred             EcCCCCEEEEEeC-----CCeEEEEECC-CCeEEEEEecCCCCEEEEEEcCCCCEEEEEE------------------CC
Q psy14440        468 FSPDRSLLLSCSQ-----DNTIRLWSLL-LWRCLVVYKGHGHPVWDIKFSPHGYYFASAG------------------HD  523 (711)
Q Consensus       468 fspdg~~L~s~s~-----Dg~V~iwdl~-t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs------------------~D  523 (711)
                      ||+||++|++.-.     .|.|-|||.. +.+.+..+..|.-.-..+.+.|+|..|+++.                  -+
T Consensus        58 fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~  137 (305)
T PF07433_consen   58 FSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQ  137 (305)
T ss_pred             EcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcC
Confidence            9999999998743     4789999998 7888889998888888899999998777763                  12


Q ss_pred             CeEEEEECCCCceeEE--e--ecCCCCeeEEEEcCCCCEEEEEEcCCc-------EEEEECCCCcEEEEee-------CC
Q psy14440        524 RMARLWATDSYHPLRL--F--VGHYSDVDCVQFHPNSNYVATGSSDRT-------IRLWDCVTGSHVRLLT-------GH  585 (711)
Q Consensus       524 g~i~lwd~~~~~~~~~--~--~~h~~~V~~v~~sp~~~~latgs~Dg~-------I~iwD~~~~~~v~~~~-------~h  585 (711)
                      -.+.+.|..+++.+..  +  ..|...|..++++.+|..++..-..|.       |.+++  .+..+..+.       .-
T Consensus       138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l  215 (305)
T PF07433_consen  138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRL  215 (305)
T ss_pred             CceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhh
Confidence            3455566777776665  3  337778999999999876665544332       44443  333333332       23


Q ss_pred             CCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy14440        586 KAPVYALSFSVCGRFLASAG-GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCS  651 (711)
Q Consensus       586 ~~~I~~la~spdg~~Lasgs-~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~  651 (711)
                      .+.+-+|+++.+|.++++.+ ..|.+.+||..+|+.+....-.  .+..++-..++ +++|.+. |.
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~-G~  278 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQ-GQ  278 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCCC-cc
Confidence            46789999999999887665 5678999999999998776543  46677777666 6766654 44

>KOG2695|consensus

Probab=98.80  E-value=1.7e-08  Score=102.68  Aligned_cols=152  Identities=23%  Similarity=0.345  Sum_probs=116.7

Q ss_pred             EEEEEcC--CCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-----cE
Q psy14440        506 WDIKFSP--HGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG-----SH  578 (711)
Q Consensus       506 ~~v~~sp--~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~-----~~  578 (711)
                      |.++|+-  .|.. ++.+.+..|-+-|++++... .|. ..++|.++.|+..++.++.|+..|.|..+|++.+     .+
T Consensus       215 ~~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~  291 (425)
T KOG2695|consen  215 WSCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC  291 (425)
T ss_pred             hhhhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc
Confidence            3345553  2334 45556778899999987533 332 6789999999999999999999999999999865     33


Q ss_pred             EEEeeCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeE---EEEeeCCCCCEEEE--EEeCCCCEEEEEeCCCcE
Q psy14440        579 VRLLTGHKAPVYALSFSV-CGRFLASAGGDGNVHMWDLSNGHL---LTLLTGHTDVVRAL--CFSRDGNILASSGQDCSV  652 (711)
Q Consensus       579 v~~~~~h~~~I~~la~sp-dg~~Lasgs~Dg~I~iwDl~sg~~---i~~l~~h~~~V~sl--~fspdg~~Lasgs~Dg~V  652 (711)
                      ...+. |.+.|+++..-. ++.+|++.+.+|+|++||++.-++   +..+.||...-.-+  -..+...+++++|.|...
T Consensus       292 a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt  370 (425)
T KOG2695|consen  292 AQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT  370 (425)
T ss_pred             eEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence            44443 889999987765 788999999999999999987666   88889986543333  334566788999999999


Q ss_pred             EEEeCCCCC
Q psy14440        653 KLWDFAKLS  661 (711)
Q Consensus       653 ~iWdl~~~~  661 (711)
                      |||.+....
T Consensus       371 RiWsl~~gh  379 (425)
T KOG2695|consen  371 RIWSLDSGH  379 (425)
T ss_pred             EEEecccCc
Confidence            999998543

>KOG0882|consensus

Probab=98.79  E-value=5.2e-08  Score=102.17  Aligned_cols=246  Identities=15%  Similarity=0.161  Sum_probs=175.2

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCE
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV  463 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V  463 (711)
                      ..|++.|+.+.-+ -.+++.+++.||.++.|.-...                            ...+.++.+..|.+.|
T Consensus         6 ymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i----------------------------sGvEfVKhFraHL~~I   56 (558)
T KOG0882|consen    6 YMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI----------------------------SGVEFVKHFRAHLGVI   56 (558)
T ss_pred             hcccceeeeEeee-hhheEEeeecchhhhhcCCCCc----------------------------cceeehhhhHHHHHHH
Confidence            4677778776544 4579999999999999985321                            1224456778899999


Q ss_pred             EEEEEcCCCCEEEEEeC-CCeEEEEECCCCeEEEEEecCCCCEEEEEE-cCCC----CEEEEEECCCeEEEEECCCCc-e
Q psy14440        464 RKLSFSPDRSLLLSCSQ-DNTIRLWSLLLWRCLVVYKGHGHPVWDIKF-SPHG----YYFASAGHDRMARLWATDSYH-P  536 (711)
Q Consensus       464 ~~l~fspdg~~L~s~s~-Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~-sp~g----~~l~sgs~Dg~i~lwd~~~~~-~  536 (711)
                      .+++.+-++..+.|.+. |..++++|+.+...+..++.-.-+= .+.| ...|    ..-++.-.++.+.++|-.... +
T Consensus        57 ~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q  135 (558)
T KOG0882|consen   57 LSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ  135 (558)
T ss_pred             HhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc
Confidence            99999999999999777 9999999998776654443221111 1222 2223    223333467899999876543 2


Q ss_pred             eE-EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC------CcE---------EEEeeCCCCCeEEEEEecCCCE
Q psy14440        537 LR-LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT------GSH---------VRLLTGHKAPVYALSFSVCGRF  600 (711)
Q Consensus       537 ~~-~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~------~~~---------v~~~~~h~~~I~~la~spdg~~  600 (711)
                      .. .-.-|.++|.++.+.+.+..+++....|.|.-|....      ++.         +..+...++..+++.|+|+|..
T Consensus       136 ~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q  215 (558)
T KOG0882|consen  136 DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ  215 (558)
T ss_pred             cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc
Confidence            33 3335999999999999999999999999999998762      111         1112234667889999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEee--------------------------------CCCC-CEEEEEEeCCCCEEEEEe
Q psy14440        601 LASAGGDGNVHMWDLSNGHLLTLLT--------------------------------GHTD-VVRALCFSRDGNILASSG  647 (711)
Q Consensus       601 Lasgs~Dg~I~iwDl~sg~~i~~l~--------------------------------~h~~-~V~sl~fspdg~~Lasgs  647 (711)
                      +.+-+.|..|++++.++|+.+..+.                                .|.. .-..++|...|++|+-|+
T Consensus       216 istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t  295 (558)
T KOG0882|consen  216 ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT  295 (558)
T ss_pred             ccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec
Confidence            9999999999999999987665432                                1221 235677888899999887


Q ss_pred             CCCcEEEEeCCCC
Q psy14440        648 QDCSVKLWDFAKL  660 (711)
Q Consensus       648 ~Dg~V~iWdl~~~  660 (711)
                      -= .|+|.++.+.
T Consensus       296 ~~-gikvin~~tn  307 (558)
T KOG0882|consen  296 IL-GIKVINLDTN  307 (558)
T ss_pred             ce-eEEEEEeecC
Confidence            54 3777777653

>KOG0309|consensus

Probab=98.77  E-value=3e-08  Score=109.10  Aligned_cols=201  Identities=23%  Similarity=0.376  Sum_probs=147.4

Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEEecC--CCCEEEEEEcCCC--CEEEEEECCCeEEEEECCCC
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW-RCLVVYKGH--GHPVWDIKFSPHG--YYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~-~~~~~~~~h--~~~V~~v~~sp~g--~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      .+++.++..+|.|+-++.++.-| +.+-|+... ..-.-+ .|  .-.|-++.|+++.  .+-++........+|++...
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            56788899999999999998877 677777542 222222 23  2346678888854  24444445566678887532


Q ss_pred             ---ceeEEeecCCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCc-EEEEeeCCCCCeEEEEEec-CCCEEEEEeCCC
Q psy14440        535 ---HPLRLFVGHYSDVDCVQFHPN-SNYVATGSSDRTIRLWDCVTGS-HVRLLTGHKAPVYALSFSV-CGRFLASAGGDG  608 (711)
Q Consensus       535 ---~~~~~~~~h~~~V~~v~~sp~-~~~latgs~Dg~I~iwD~~~~~-~v~~~~~h~~~I~~la~sp-dg~~Lasgs~Dg  608 (711)
                         ..-..+.||...|+.+.|++. ...+++++.|..|..||+++-. .+..+..-...-..++|+- ++..+|+ +..+
T Consensus       102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~  180 (1081)
T KOG0309|consen  102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGN  180 (1081)
T ss_pred             CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh-ccCC
Confidence               233456789999999999984 5679999999999999998753 4555555556667899986 4555554 4556


Q ss_pred             cEEEEECCCC-eEEEEeeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCCCc
Q psy14440        609 NVHMWDLSNG-HLLTLLTGHTDVVRALCFSRD-GNILASSGQDCSVKLWDFAKLSDE  663 (711)
Q Consensus       609 ~I~iwDl~sg-~~i~~l~~h~~~V~sl~fspd-g~~Lasgs~Dg~V~iWdl~~~~~~  663 (711)
                      .|++||++.| ..+..+++|...|+++.|..- -..+.+++.||+|+.||..+...+
T Consensus       181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e  237 (1081)
T KOG0309|consen  181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE  237 (1081)
T ss_pred             ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence            8999999876 578889999999999999762 346888999999999999875543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.77  E-value=3.6e-06  Score=92.96  Aligned_cols=251  Identities=8%  Similarity=-0.006  Sum_probs=157.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeecc-Cc--------cccccccccCCcEEEEEecCCCeeEEEeecccCCEEE-EEE
Q psy14440        399 VSILAVGFSESYIKLWSLVPQKLKAMKS-SD--------QLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRK-LSF  468 (711)
Q Consensus       399 g~~LatG~~dg~I~vWdl~~~~~~~~~~-~~--------~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~-l~f  468 (711)
                      +..++.|+.+|.+..+|..++++.-... ..        ....+.+...++.+..+|..+++....+......+.. ..-
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~  199 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES  199 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence            4466677788888888887665432111 00        1223455667888999999999888776532111100 000


Q ss_pred             cC--CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC-------CEEEEEEcC--CCCEEEEEECCCeEEEEECCCCcee
Q psy14440        469 SP--DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGH-------PVWDIKFSP--HGYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       469 sp--dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~-------~V~~v~~sp--~g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      +|  .+..++.++.+|.+..+|..+++.+..+.....       ....+.-+|  .+..+++++.+|.+..+|..+++.+
T Consensus       200 sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~  279 (394)
T PRK11138        200 APATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV  279 (394)
T ss_pred             CCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence            11  234577788899999999998887655431110       011111222  2456777788999999999999876


Q ss_pred             EEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy14440        538 RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHK-APVYALSFSVCGRFLASAGGDGNVHMWDLS  616 (711)
Q Consensus       538 ~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~-~~I~~la~spdg~~Lasgs~Dg~I~iwDl~  616 (711)
                      .....  .....+..  .+..|+.++.+|.+..+|..+|+.+-....-. ....+..+  .+.+|+.++.||.|.++|..
T Consensus       280 W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~  353 (394)
T PRK11138        280 WKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINRE  353 (394)
T ss_pred             EeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECC
Confidence            54421  11222222  46678888899999999999998765433111 11222222  25678889999999999999


Q ss_pred             CCeEEEEeeCCCCCEE-EEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        617 NGHLLTLLTGHTDVVR-ALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       617 sg~~i~~l~~h~~~V~-sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      +|+.+...+.....+. +..+.  +..|+.++.||.|..++.
T Consensus       354 tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        354 DGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEeC
Confidence            9999888765433333 22332  457888899999988764

>KOG1912|consensus

Probab=98.72  E-value=8.2e-06  Score=91.01  Aligned_cols=280  Identities=13%  Similarity=0.107  Sum_probs=180.5

Q ss_pred             EEEecCCCceEEEEECCCC------------CEEEEEeCCCeEEEEeCCCCceeee--------------ccCccc-ccc
Q psy14440        381 YTLLNARQQVTCAEISEDV------------SILAVGFSESYIKLWSLVPQKLKAM--------------KSSDQL-QDI  433 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg------------~~LatG~~dg~I~vWdl~~~~~~~~--------------~~~~~~-~~l  433 (711)
                      .++..|...|+.+.|.|-.            -+||++.-.|.|.+||.........              ...++. ..+
T Consensus        49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~L  128 (1062)
T KOG1912|consen   49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVL  128 (1062)
T ss_pred             hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhee
Confidence            3456688899999998621            2678888899999999865432211              111122 223


Q ss_pred             ccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcC-CCCEEEEEeCCCeEEEEECC-------CCeEEEEEecCCC--
Q psy14440        434 EMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLL-------LWRCLVVYKGHGH--  503 (711)
Q Consensus       434 ~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~-------t~~~~~~~~~h~~--  503 (711)
                      +.......+.+|+..+|+.............|+.+.| |.+.+..-+..|.|.+-+.-       .++....-..|..  
T Consensus       129 laIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~  208 (1062)
T KOG1912|consen  129 LAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLA  208 (1062)
T ss_pred             EEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchh
Confidence            4445567889999999999888776667778899988 66666666666777666542       1233332222221  


Q ss_pred             ----------C-------------EEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCC--CE
Q psy14440        504 ----------P-------------VWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNS--NY  558 (711)
Q Consensus       504 ----------~-------------V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~--~~  558 (711)
                                .             ...++|+|.-+.++.....+.+.++|++-..++....-..+.+.-+.|-|++  ..
T Consensus       209 ~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~  288 (1062)
T KOG1912|consen  209 HLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA  288 (1062)
T ss_pred             hhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcce
Confidence                      0             1124678876666666677889999998777777776666666677776654  45


Q ss_pred             EEEEEcCCcEEEEECCC----------------CcEE---EEe-------------------------------------
Q psy14440        559 VATGSSDRTIRLWDCVT----------------GSHV---RLL-------------------------------------  582 (711)
Q Consensus       559 latgs~Dg~I~iwD~~~----------------~~~v---~~~-------------------------------------  582 (711)
                      |+++..||.+.+|-.+.                +.++   +.+                                     
T Consensus       289 LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri  368 (1062)
T KOG1912|consen  289 LFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRI  368 (1062)
T ss_pred             EEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence            88888888888875432                1111   110                                     


Q ss_pred             -----------------------------------eCCCCCeEEEEEec-----------CC-------CEEEEEeCCCc
Q psy14440        583 -----------------------------------TGHKAPVYALSFSV-----------CG-------RFLASAGGDGN  609 (711)
Q Consensus       583 -----------------------------------~~h~~~I~~la~sp-----------dg-------~~Lasgs~Dg~  609 (711)
                                                         .+|....++....|           .|       .++|.|...|+
T Consensus       369 ~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGT  448 (1062)
T KOG1912|consen  369 HLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGT  448 (1062)
T ss_pred             CcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCce
Confidence                                               01222223322221           12       25788999999


Q ss_pred             EEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEE---------EeCCCcEEEEeCCCC
Q psy14440        610 VHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILAS---------SGQDCSVKLWDFAKL  660 (711)
Q Consensus       610 I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Las---------gs~Dg~V~iWdl~~~  660 (711)
                      |.++|+.++...+.+..|.+.|.++.|.....++-.         |+.-+.+.|-|++++
T Consensus       449 V~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtG  508 (1062)
T KOG1912|consen  449 VDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTG  508 (1062)
T ss_pred             EEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccc
Confidence            999999999999999999999999999865443322         222345666676654

>KOG1832|consensus

Probab=98.71  E-value=5.1e-09  Score=116.85  Aligned_cols=199  Identities=19%  Similarity=0.256  Sum_probs=152.4

Q ss_pred             CeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCC--eEE
Q psy14440        450 AETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDR--MAR  527 (711)
Q Consensus       450 ~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg--~i~  527 (711)
                      .+..+.++.|....+|++|+-+.++|+.|+..|.|++|++.+|.....+.+|+.+|+-+.-+.+|...++.+.-.  ...
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            344567788999999999999999999999999999999999999999999999999999999998777665332  467


Q ss_pred             EEECCC-CceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEe-e---CCCCCeEEEEEecCCCEEE
Q psy14440        528 LWATDS-YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLL-T---GHKAPVYALSFSVCGRFLA  602 (711)
Q Consensus       528 lwd~~~-~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~-~---~h~~~I~~la~spdg~~La  602 (711)
                      +|+..+ +.+...|.    .-.|+.|+.....-+.|+....+.+||++++..+.++ .   +....-++..|||+..+++
T Consensus      1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            898864 34444443    3468889865555566666677899999999876663 2   2233447889999998876


Q ss_pred             EEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCc
Q psy14440        603 SAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDE  663 (711)
Q Consensus       603 sgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~  663 (711)
                         .||  .+||.+..+.+..|...+..+ +-.|+|.|+-++.-+     .|||++++.-.
T Consensus      1247 ---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred             ---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHH
Confidence               455  379999988887776554322 336999999888876     38999886543

>KOG2066|consensus

Probab=98.70  E-value=1e-06  Score=98.84  Aligned_cols=182  Identities=17%  Similarity=0.273  Sum_probs=131.9

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEE
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLS  467 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~  467 (711)
                      +.++|++++  +++||.|+.+|.|++.+..+..                                 ++...|+..     
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---------------------------------~~~~~~s~~-----   79 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---------------------------------KTNFDHSSS-----   79 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc---------------------------------ccccccccc-----
Confidence            456677776  4689999999999999875321                                 122233332     


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCC-----CCEEEEEECCCeEEEEECC--CCceeEEe
Q psy14440        468 FSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH-----GYYFASAGHDRMARLWATD--SYHPLRLF  540 (711)
Q Consensus       468 fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~-----g~~l~sgs~Dg~i~lwd~~--~~~~~~~~  540 (711)
                       .-+|.+++|||.||+|.|..+.+.+...++. ...++.+|+++|+     .+.|++||.-| +.++.-+  ..+....+
T Consensus        80 -~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l  156 (846)
T KOG2066|consen   80 -ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVL  156 (846)
T ss_pred             -ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceee
Confidence             5589999999999999999999888877776 4678999999997     46899999888 7776432  11112245


Q ss_pred             ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCe------EEEEEecCCCEEEEEeCCCcEEEEE
Q psy14440        541 VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPV------YALSFSVCGRFLASAGGDGNVHMWD  614 (711)
Q Consensus       541 ~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I------~~la~spdg~~Lasgs~Dg~I~iwD  614 (711)
                      ....+.|.+|+|.  |+++|-++.+| |++||+.+++.+..+......+      ..+.|.++.+ |+.|-. .+|+|..
T Consensus       157 ~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~-d~v~i~~  231 (846)
T KOG2066|consen  157 SEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWG-DSVKICS  231 (846)
T ss_pred             ecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecC-CeEEEEE
Confidence            5667899999996  88999999776 8999999988777665433322      3467766554 455543 4799998


Q ss_pred             CCC
Q psy14440        615 LSN  617 (711)
Q Consensus       615 l~s  617 (711)
                      ++.
T Consensus       232 I~~  234 (846)
T KOG2066|consen  232 IKK  234 (846)
T ss_pred             Eec
Confidence            873

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.68  E-value=8.8e-06  Score=89.86  Aligned_cols=221  Identities=10%  Similarity=-0.054  Sum_probs=139.4

Q ss_pred             ccccccCCcEEEEEecCCCeeEEEeecccCCEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEE-EE
Q psy14440        432 DIEMECDDILVRIMDERNAETTRTLVGHEGPVRK-LSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWD-IK  509 (711)
Q Consensus       432 ~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~-l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~-v~  509 (711)
                      .+.+++.++.++.+|..+++......... .+.+ ...  .+..++.++.+|.|..+|..+++.+..+......+.. ..
T Consensus       122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~  198 (394)
T PRK11138        122 KVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE  198 (394)
T ss_pred             EEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence            44566678889999999998877665432 2222 112  2446777888999999999999988877643111100 00


Q ss_pred             EcC--CCCEEEEEECCCeEEEEECCCCceeEEeecCCC-------CeeEEEEcC--CCCEEEEEEcCCcEEEEECCCCcE
Q psy14440        510 FSP--HGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-------DVDCVQFHP--NSNYVATGSSDRTIRLWDCVTGSH  578 (711)
Q Consensus       510 ~sp--~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~-------~V~~v~~sp--~~~~latgs~Dg~I~iwD~~~~~~  578 (711)
                      -+|  .+..++.++.+|.+..+|..+++.+........       ....+..+|  .+..+++++.+|.+..+|..+|+.
T Consensus       199 ~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~  278 (394)
T PRK11138        199 SAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI  278 (394)
T ss_pred             CCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE
Confidence            111  123567777899999999998876654321100       011111122  356777788899999999999987


Q ss_pred             EEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        579 VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHT-DVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       579 v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~-~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      +.....  +....+.  .++..|+.++.+|.|..+|..+|+.+-....-. ....+...  .+..|+.++.||.|.+.|.
T Consensus       279 ~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        279 VWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR  352 (394)
T ss_pred             EEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence            655431  1112222  246678888899999999999998765443211 11222223  2567788899999999998


Q ss_pred             CCCC
Q psy14440        658 AKLS  661 (711)
Q Consensus       658 ~~~~  661 (711)
                      .+..
T Consensus       353 ~tG~  356 (394)
T PRK11138        353 EDGR  356 (394)
T ss_pred             CCCC
Confidence            7643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.67  E-value=2.7e-07  Score=92.65  Aligned_cols=206  Identities=16%  Similarity=0.308  Sum_probs=140.3

Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-E----EEEEecCC------------CCEEEEEEcCCC--CEEEEE
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR-C----LVVYKGHG------------HPVWDIKFSPHG--YYFASA  520 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~-~----~~~~~~h~------------~~V~~v~~sp~g--~~l~sg  520 (711)
                      ...|+++.|...|.+|++|...|.|.+|.-.... |    ...+++|.            ..|..+.|..++  ..|+..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4568999999999999999999999999764322 1    22345553            346778887644  477788


Q ss_pred             ECCCeEEEEECCCCc------------------------------------------eeEEe-ecCCCCeeEEEEcCCCC
Q psy14440        521 GHDRMARLWATDSYH------------------------------------------PLRLF-VGHYSDVDCVQFHPNSN  557 (711)
Q Consensus       521 s~Dg~i~lwd~~~~~------------------------------------------~~~~~-~~h~~~V~~v~~sp~~~  557 (711)
                      +.|++|++|.+....                                          +.+.. ..|..-|.++.|+.+..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            899999999765320                                          11111 24666688889988777


Q ss_pred             EEEEEEcCCcEEEEECCCCcE---EEEeeCCC-----CCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEE------E
Q psy14440        558 YVATGSSDRTIRLWDCVTGSH---VRLLTGHK-----APVYALSFSVC-GRFLASAGGDGNVHMWDLSNGHLL------T  622 (711)
Q Consensus       558 ~latgs~Dg~I~iwD~~~~~~---v~~~~~h~-----~~I~~la~spd-g~~Lasgs~Dg~I~iwDl~sg~~i------~  622 (711)
                      .++++. |-.|.+|++.--..   +-.++.|.     .-|++..|+|. ...+.-.+..|.|++-|++...+.      .
T Consensus       186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            776654 77899998764322   22233443     35888899984 344555667899999999843211      1


Q ss_pred             E----------eeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcc
Q psy14440        623 L----------LTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTE  667 (711)
Q Consensus       623 ~----------l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~  667 (711)
                      .          +.+-...|..+.|+++|+++++-+. .+|+|||++.......+.
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi  318 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI  318 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee
Confidence            0          1122356888999999999997664 599999999877665443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.67  E-value=7e-06  Score=82.63  Aligned_cols=202  Identities=15%  Similarity=0.150  Sum_probs=118.6

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcC
Q psy14440        391 TCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSP  470 (711)
Q Consensus       391 ~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fsp  470 (711)
                      .-++||+|+.+||.+.+.|+|+++|+.+..+..+.......                         ..-...|.++.|..
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~-------------------------~d~~~Aiagl~Fl~  101 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFP-------------------------GDLSDAIAGLIFLE  101 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccC-------------------------CccccceeeeEeec
Confidence            46899999999999999999999999876554333211100                         01234555555543


Q ss_pred             C------CCEEEEEeCCCeEEEEECC-----CCeEEEEEec---CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q psy14440        471 D------RSLLLSCSQDNTIRLWSLL-----LWRCLVVYKG---HGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP  536 (711)
Q Consensus       471 d------g~~L~s~s~Dg~V~iwdl~-----t~~~~~~~~~---h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~  536 (711)
                      .      ...|++-..+|.++-|-+.     ..+....+..   +...|.++.|+|..+.|++||....      +.+. 
T Consensus       102 ~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-  174 (282)
T PF15492_consen  102 YKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM-  174 (282)
T ss_pred             cccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-
Confidence            2      1246666777777776652     2333444332   3668999999998888887774322      0000 


Q ss_pred             eEEeecCCCCeeEEEEcCCCCE--EEEEEcCC------cEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCC
Q psy14440        537 LRLFVGHYSDVDCVQFHPNSNY--VATGSSDR------TIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG  608 (711)
Q Consensus       537 ~~~~~~h~~~V~~v~~sp~~~~--latgs~Dg------~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg  608 (711)
                         -......+++-..-.+.-|  .++...|+      +-.+|.+-+.+...........|..+..||||..||+...+|
T Consensus       175 ---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG  251 (282)
T PF15492_consen  175 ---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSG  251 (282)
T ss_pred             ---ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCC
Confidence               0011122222222211111  11222121      122333332222211123567899999999999999999999


Q ss_pred             cEEEEECCCCeEEEEeeCC
Q psy14440        609 NVHMWDLSNGHLLTLLTGH  627 (711)
Q Consensus       609 ~I~iwDl~sg~~i~~l~~h  627 (711)
                      .|.+|++.+-++...+.-+
T Consensus       252 ~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  252 SLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             eEEEEecCcchhhcccchh
Confidence            9999999988777666543

>KOG2695|consensus

Probab=98.66  E-value=6.8e-08  Score=98.35  Aligned_cols=168  Identities=15%  Similarity=0.146  Sum_probs=127.5

Q ss_pred             EEEcC--CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-----ceeE
Q psy14440        466 LSFSP--DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY-----HPLR  538 (711)
Q Consensus       466 l~fsp--dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~-----~~~~  538 (711)
                      ++|+-  .|-. ++.+.+..|-+-|+.++... .+. ..+.|.++.|...++.+..|+..|.|..+|++.+     .+..
T Consensus       217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~  293 (425)
T KOG2695|consen  217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ  293 (425)
T ss_pred             hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence            35553  2334 55666777889998876432 232 5678889999988999999999999999999865     2333


Q ss_pred             EeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcE---EEEeeCCCCCeEEE--EEecCCCEEEEEeCCCcEEE
Q psy14440        539 LFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGSH---VRLLTGHKAPVYAL--SFSVCGRFLASAGGDGNVHM  612 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~---v~~~~~h~~~I~~l--a~spdg~~Lasgs~Dg~I~i  612 (711)
                      .+ -|.+.|+|+..-. ++.+|.+.+.+|+|++||++.-++   ++.+.||-..-.-+  -+.+....++++|.|...+|
T Consensus       294 rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi  372 (425)
T KOG2695|consen  294 RL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI  372 (425)
T ss_pred             EE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence            33 4889999998776 788999999999999999998777   89999986543333  34456778899999999999


Q ss_pred             EECCCCeEEEEeeCCC----CCEEEEEEe
Q psy14440        613 WDLSNGHLLTLLTGHT----DVVRALCFS  637 (711)
Q Consensus       613 wDl~sg~~i~~l~~h~----~~V~sl~fs  637 (711)
                      |.+++|.++.++....    ..+.+++|.
T Consensus       373 Wsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  373 WSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             EecccCceeeccCCCCccccccccceehh
Confidence            9999999999886433    245566654

>KOG1275|consensus

Probab=98.62  E-value=8.1e-07  Score=100.48  Aligned_cols=181  Identities=17%  Similarity=0.184  Sum_probs=140.7

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEE
Q psy14440        471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCV  550 (711)
Q Consensus       471 dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v  550 (711)
                      ++..++.|+.-..+..+|+.+.+...........|.-++.  +++++.+|...|+|.+-|.++.+.+.++..|.+.|..+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            4556777777777899999988887777655555655554  57899999999999999999999999999999999888


Q ss_pred             EEcCCCCEEEEEEc---------CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEE---CCC
Q psy14440        551 QFHPNSNYVATGSS---------DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVC-GRFLASAGGDGNVHMWD---LSN  617 (711)
Q Consensus       551 ~~sp~~~~latgs~---------Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spd-g~~Lasgs~Dg~I~iwD---l~s  617 (711)
                      ..+  |+.|++++.         |..|+|||+++-+.+.-+.-+.++ .-+.|.|. ...+++++..|...+-|   +.+
T Consensus       224 Dv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  224 DVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             ecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence            775  788888774         567999999988766555544444 44566664 45678888889999999   433


Q ss_pred             Ce-EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        618 GH-LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       618 g~-~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      .. .+..+...+..+.++++|++|+.||.|..+|.|.+|-
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            32 2333333345699999999999999999999999997

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.61  E-value=1.8e-05  Score=80.42  Aligned_cols=186  Identities=14%  Similarity=0.081  Sum_probs=122.1

Q ss_pred             cccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ecCC---CCEE
Q psy14440        431 QDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY-KGHG---HPVW  506 (711)
Q Consensus       431 ~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~-~~h~---~~V~  506 (711)
                      ..+.+...++.++.+|..+++....... .+.+.... ..++..+++++.++.|+.+|..+++.+... ....   ....
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~  114 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS  114 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB-
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccccc
Confidence            3344556788888889888888776664 22211111 224556777778889999999999998884 4321   1112


Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCC----------eeEEEEcCCCCEEEEEEcCCcEEEEECCCC
Q psy14440        507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSD----------VDCVQFHPNSNYVATGSSDRTIRLWDCVTG  576 (711)
Q Consensus       507 ~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~----------V~~v~~sp~~~~latgs~Dg~I~iwD~~~~  576 (711)
                      .......+..++++..++.+..+|.++++.+.........          +.+-....++ .++.++.++.+.-+|+.++
T Consensus       115 ~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg  193 (238)
T PF13360_consen  115 SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG  193 (238)
T ss_dssp             -SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT
T ss_pred             ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC
Confidence            2222223778899998999999999999988777654422          1122222244 7777777776444499999


Q ss_pred             cEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy14440        577 SHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLT  622 (711)
Q Consensus       577 ~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~  622 (711)
                      +.+....  ...+..+ ...++..|++++.++.|..||+++|+.+-
T Consensus       194 ~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  194 EKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             CEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            8664322  2223321 45678888888899999999999999764

...

>KOG2066|consensus

Probab=98.61  E-value=3.1e-06  Score=95.08  Aligned_cols=181  Identities=17%  Similarity=0.205  Sum_probs=133.0

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEe
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF  540 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~  540 (711)
                      ..++|++++  +++|+-|+.+|.|++++.... . .+...|...      .-.|.|+++||.||+|.|..+.+.+....+
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            345666664  678999999999999987633 2 333334433      457999999999999999999887766655


Q ss_pred             ecCCCCeeEEEEcCC-----CCEEEEEEcCCcEEEEECCC---CcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q psy14440        541 VGHYSDVDCVQFHPN-----SNYVATGSSDRTIRLWDCVT---GSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHM  612 (711)
Q Consensus       541 ~~h~~~V~~v~~sp~-----~~~latgs~Dg~I~iwD~~~---~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~i  612 (711)
                      . ....+.+|+++|+     .+.+++|+.-| +.++.-+-   ...+ .+....++|.+++|.  |++||-++++| |+|
T Consensus       110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~v  183 (846)
T KOG2066|consen  110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKV  183 (846)
T ss_pred             e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence            3 4578999999997     57799999888 77775321   1122 355567899999997  88999888776 999


Q ss_pred             EECCCCeEEEEeeCCCCC------EEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        613 WDLSNGHLLTLLTGHTDV------VRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       613 wDl~sg~~i~~l~~h~~~------V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ||+.+++.+..+......      -..+.|.++.+ |+.|- ..+|+|..+++
T Consensus       184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~~  234 (846)
T KOG2066|consen  184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIKK  234 (846)
T ss_pred             EeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEec
Confidence            999999988877643322      34678886655 44444 44899999883

>KOG1645|consensus

Probab=98.60  E-value=4.3e-06  Score=87.08  Aligned_cols=144  Identities=16%  Similarity=0.179  Sum_probs=105.1

Q ss_pred             CCceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEE
Q psy14440        375 LPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTR  454 (711)
Q Consensus       375 lps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  454 (711)
                      .|+...+..+.|...-.|+.+++..++++.+..-+...+=....            ..+.  ..-| +++++..+.+...
T Consensus       123 ~ps~q~~a~hkh~qk~f~v~r~~gcrli~y~~~~s~lv~sQks~------------qa~l--pGvG-v~~l~~~~fkssq  187 (463)
T KOG1645|consen  123 EPSGQAFAIHKHKQKSFSVGRNAGCRLIGYDESSSTLVVSQKSG------------QALL--PGVG-VQKLESHDFKSSQ  187 (463)
T ss_pred             CchhhHHHHHhhcccceeeeecCCceEEecccccceeeeeccch------------hhcC--Cccc-eEEeccCCcchhh
Confidence            46666666666777777777777766665554333222211110            0111  1122 6677777777777


Q ss_pred             EeecccCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCC-CEEEEEECCCeEEEEECC
Q psy14440        455 TLVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATD  532 (711)
Q Consensus       455 ~l~~h~~~V~~l~fspdg~-~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g-~~l~sgs~Dg~i~lwd~~  532 (711)
                      .+.+|...|.+++|||..+ ++..++.+.+|+|.|+++..++..+..+ ..+|+++|.-+. +++..|...|.|.+||++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            7788899999999999877 7888999999999999999999999887 899999998855 577788899999999998


Q ss_pred             CC
Q psy14440        533 SY  534 (711)
Q Consensus       533 ~~  534 (711)
                      ..
T Consensus       267 ~~  268 (463)
T KOG1645|consen  267 QP  268 (463)
T ss_pred             CC
Confidence            53

>KOG4714|consensus

Probab=98.59  E-value=2e-07  Score=91.66  Aligned_cols=165  Identities=20%  Similarity=0.214  Sum_probs=106.7

Q ss_pred             EEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE-EEEecCCCCEEEEEEcCCCCEEEEEE-----CCCeE
Q psy14440        453 TRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCL-VVYKGHGHPVWDIKFSPHGYYFASAG-----HDRMA  526 (711)
Q Consensus       453 ~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~-~~~~~h~~~V~~v~~sp~g~~l~sgs-----~Dg~i  526 (711)
                      .+.+..|+++-.+-+.+--++.++++..||.+.+++.+.-..+ .....-...-.+.++...++.+.+++     .-+..
T Consensus        82 ~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~  161 (319)
T KOG4714|consen   82 FKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF  161 (319)
T ss_pred             eeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence            3444455555444445556778999999999999998641111 11111111112233333454444432     22345


Q ss_pred             EEEECCCCceeEEeecCCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcE-EEEeeCCCCCeEEEEEec-CCCEEEE
Q psy14440        527 RLWATDSYHPLRLFVGHYSDVDCVQFHPN-SNYVATGSSDRTIRLWDCVTGSH-VRLLTGHKAPVYALSFSV-CGRFLAS  603 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~~h~~~V~~v~~sp~-~~~latgs~Dg~I~iwD~~~~~~-v~~~~~h~~~I~~la~sp-dg~~Las  603 (711)
                      +.|+++-.+.+..-......|.+++-||. .+.+++|+.||.+.+||.++... +..+..|+.+|+.+-|+| ++..|++
T Consensus       162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft  241 (319)
T KOG4714|consen  162 YANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT  241 (319)
T ss_pred             eeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE
Confidence            56666544333222223344999999995 55677888999999999998743 345678999999999998 6789999


Q ss_pred             EeCCCcEEEEECCC
Q psy14440        604 AGGDGNVHMWDLSN  617 (711)
Q Consensus       604 gs~Dg~I~iwDl~s  617 (711)
                      +++||.+.-||..+
T Consensus       242 ~sedGslw~wdas~  255 (319)
T KOG4714|consen  242 CSEDGSLWHWDAST  255 (319)
T ss_pred             ecCCCcEEEEcCCC
Confidence            99999999999654

>KOG1275|consensus

Probab=98.58  E-value=1e-06  Score=99.73  Aligned_cols=176  Identities=18%  Similarity=0.281  Sum_probs=134.2

Q ss_pred             ccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCC
Q psy14440        434 EMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH  513 (711)
Q Consensus       434 ~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~  513 (711)
                      ..++-...+..+|..+.+..+...-..+.|+-++.  +++++.+|...|+|.+-|..+.+.++++.+|.+.|.++..  .
T Consensus       151 i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~  226 (1118)
T KOG1275|consen  151 IMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--Q  226 (1118)
T ss_pred             eecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--c
Confidence            33444445566777777777766655556766665  6889999999999999999999999999999999987766  5


Q ss_pred             CCEEEEEEC---------CCeEEEEECCCCceeEEeecCCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCC---C-cEE
Q psy14440        514 GYYFASAGH---------DRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN-SNYVATGSSDRTIRLWDCVT---G-SHV  579 (711)
Q Consensus       514 g~~l~sgs~---------Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~-~~~latgs~Dg~I~iwD~~~---~-~~v  579 (711)
                      |+.+++||.         |..|+|||++..+.+.-+.-+.++ .-+.|+|. ...+++++..|.+.+.|..+   - ..+
T Consensus       227 GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~  305 (1118)
T KOG1275|consen  227 GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGV  305 (1118)
T ss_pred             CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccce
Confidence            889999884         567899999887655544433333 56788884 56788888899999998432   2 123


Q ss_pred             EEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q psy14440        580 RLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD  614 (711)
Q Consensus       580 ~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwD  614 (711)
                      ..+......+.++++|++|..||.|..+|.|.+|.
T Consensus       306 ~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  306 KMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            33444455699999999999999999999999997

>KOG1920|consensus

Probab=98.57  E-value=1.3e-05  Score=93.80  Aligned_cols=237  Identities=17%  Similarity=0.164  Sum_probs=150.5

Q ss_pred             cCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEE
Q psy14440        385 NARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVR  464 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~  464 (711)
                      +..+.|.++.|--+..-++.+...|.|.+-|..+..+..                                ...-.+.|.
T Consensus        66 ~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--------------------------------vg~vd~GI~  113 (1265)
T KOG1920|consen   66 DGDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI--------------------------------VGNVDNGIS  113 (1265)
T ss_pred             CCCcceEEEEEecccceEEEEecCCcEEEEcccccceee--------------------------------eeeccCceE
Confidence            344689999999999999999999998888765433221                                112356799


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECC----C-------------------CeEEEEEecCCC------------------
Q psy14440        465 KLSFSPDRSLLLSCSQDNTIRLWSLL----L-------------------WRCLVVYKGHGH------------------  503 (711)
Q Consensus       465 ~l~fspdg~~L~s~s~Dg~V~iwdl~----t-------------------~~~~~~~~~h~~------------------  503 (711)
                      +++||+|+..++..+.++++.+-+-.    .                   |+....++|..+                  
T Consensus       114 aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~  193 (1265)
T KOG1920|consen  114 AASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE  193 (1265)
T ss_pred             EEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchh
Confidence            99999999999999888887765420    0                   111112221111                  


Q ss_pred             ---CEEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEE---cCCcEEEEE
Q psy14440        504 ---PVWDIKFSPHGYYFASAG-----HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS---SDRTIRLWD  572 (711)
Q Consensus       504 ---~V~~v~~sp~g~~l~sgs-----~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs---~Dg~I~iwD  572 (711)
                         .=.+|.|--||.+|++..     ..+.+++||.+ +..-.+-....+--.+++|-|.|..+++-.   +|+.|.+|.
T Consensus       194 ~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE  272 (1265)
T KOG1920|consen  194 QDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE  272 (1265)
T ss_pred             hccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe
Confidence               113489999999999843     33899999988 432222222334456899999999998853   466799998


Q ss_pred             CCCCcEEEEee----CCCCCeEEEEEecCCCEEEE---EeCCCcEEEEECCCCeE--EEEeeCCCCCEEEEEEeCCC-CE
Q psy14440        573 CVTGSHVRLLT----GHKAPVYALSFSVCGRFLAS---AGGDGNVHMWDLSNGHL--LTLLTGHTDVVRALCFSRDG-NI  642 (711)
Q Consensus       573 ~~~~~~v~~~~----~h~~~I~~la~spdg~~Las---gs~Dg~I~iwDl~sg~~--i~~l~~h~~~V~sl~fspdg-~~  642 (711)
                       ++|-....|.    .....|..++|+.++..||+   ......|++|.+.+-.-  -..+.......  +.|+|.- ..
T Consensus       273 -rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~  349 (1265)
T KOG1920|consen  273 -RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKT  349 (1265)
T ss_pred             -cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCcee
Confidence             4443333222    22344899999999999997   44445699999877542  22333222222  6666632 22


Q ss_pred             EEEEeCCCcEEEEeC
Q psy14440        643 LASSGQDCSVKLWDF  657 (711)
Q Consensus       643 Lasgs~Dg~V~iWdl  657 (711)
                      |..-..+|.+.++|+
T Consensus       350 L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  350 LHVLRESGQRLVRDF  364 (1265)
T ss_pred             EEEEecCCcEEEEEE
Confidence            333335555555444

>KOG2114|consensus

Probab=98.53  E-value=7.1e-06  Score=92.79  Aligned_cols=237  Identities=14%  Similarity=0.197  Sum_probs=152.1

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC-EEEEEEcCCCCEEEEEECCC-----eEEEEECCCC------
Q psy14440        467 SFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP-VWDIKFSPHGYYFASAGHDR-----MARLWATDSY------  534 (711)
Q Consensus       467 ~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~-V~~v~~sp~g~~l~sgs~Dg-----~i~lwd~~~~------  534 (711)
                      +|++.+..++.|+.+|.|.+.+-. .+.+..++.+... |..+....+..++++.+.|+     .+++|+++..      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            467788899999999988887743 4455677777666 44443333446777777665     4899998643      


Q ss_pred             cee---EEee----cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC--C--CCcEEEEeeCCCCCeEEEEEecCCCEEEE
Q psy14440        535 HPL---RLFV----GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDC--V--TGSHVRLLTGHKAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       535 ~~~---~~~~----~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~--~--~~~~v~~~~~h~~~I~~la~spdg~~Las  603 (711)
                      .++   +.+.    ....++.+++.|.+-+.+|+|-.+|.|..+.-  .  .|.........+.+|+.+++..+++.+.-
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            233   2222    13557889999999999999999999998842  1  12222223334679999999999987333


Q ss_pred             EeCCCcEEEEECCCCe-EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccc
Q psy14440        604 AGGDGNVHMWDLSNGH-LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSL  682 (711)
Q Consensus       604 gs~Dg~I~iwDl~sg~-~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~  682 (711)
                      +.....|.+|.+.... ....+..|+..+++.+|++....+++|+ +..|.+||..........+   .++....-+...
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~---~g~kk~~~~~~~  264 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE---VGEKKEMLVFSF  264 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec---CCCeEEEEEEec
Confidence            3334589999997444 2555778888899999887555455554 4579999987543322221   011111111233


Q ss_pred             cceeeecccCCcceEEEEEccCCeee
Q psy14440        683 AYLVRSYKTKASPLLHLIFSRRNILL  708 (711)
Q Consensus       683 ~~~l~~~~t~~~pV~~v~Fs~~n~ll  708 (711)
                      +..+-....+.++..++.+|..|..+
T Consensus       265 g~~L~v~~~~~~~~~s~s~ss~~~i~  290 (933)
T KOG2114|consen  265 GLLLCVTTDKGTENTSLSNSSSNRIF  290 (933)
T ss_pred             CEEEEEEccCCCCCcccCccchhhee
Confidence            55555566667776667766655543

>KOG2114|consensus

Probab=98.51  E-value=3.2e-05  Score=87.61  Aligned_cols=203  Identities=13%  Similarity=0.150  Sum_probs=136.4

Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCC-EEEEEEcCCC
Q psy14440        394 EISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGP-VRKLSFSPDR  472 (711)
Q Consensus       394 ~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~-V~~l~fspdg  472 (711)
                      +|++.+..+|.|+.+|.|.+.+-                                +.+..+.+..+... |..+-...+.
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~--------------------------------s~~~~~~fqa~~~siv~~L~~~~~~   77 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS--------------------------------SFQLIRGFQAYEQSIVQFLYILNKQ   77 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc--------------------------------cceeeehheecchhhhhHhhcccCc
Confidence            46788889999999998877663                                22233445555555 4444333344


Q ss_pred             CEEEEEeCCCe-----EEEEECCC------CeEEE--EEec-----CCCCEEEEEEcCCCCEEEEEECCCeEEEEECC--
Q psy14440        473 SLLLSCSQDNT-----IRLWSLLL------WRCLV--VYKG-----HGHPVWDIKFSPHGYYFASAGHDRMARLWATD--  532 (711)
Q Consensus       473 ~~L~s~s~Dg~-----V~iwdl~t------~~~~~--~~~~-----h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~--  532 (711)
                      .+|++.+.|+.     |+||+++.      -.++.  ....     ...++.+++.+.+-+.+|+|-.+|.|.++.-+  
T Consensus        78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~  157 (933)
T KOG2114|consen   78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL  157 (933)
T ss_pred             eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence            67888777654     89999953      23331  1112     25678899999998999999999999998432  


Q ss_pred             --CCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-EEEEeeCCCCCeEEEEEecCCCEEEEEeCCCc
Q psy14440        533 --SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS-HVRLLTGHKAPVYALSFSVCGRFLASAGGDGN  609 (711)
Q Consensus       533 --~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~-~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~  609 (711)
                        .+...........+|+.+.+..++..++.......|.+|.+.... ....+..|...++|.++++....+++|+. ..
T Consensus       158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~  236 (933)
T KOG2114|consen  158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EF  236 (933)
T ss_pred             hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ce
Confidence              222233333456789999999888874444446779999987443 25557778889999999876553555543 46


Q ss_pred             EEEEECCCCeEEEEee-CCCC
Q psy14440        610 VHMWDLSNGHLLTLLT-GHTD  629 (711)
Q Consensus       610 I~iwDl~sg~~i~~l~-~h~~  629 (711)
                      |.+||.........+. ||..
T Consensus       237 l~fY~sd~~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  237 LYFYDSDGRGPCFAFEVGEKK  257 (933)
T ss_pred             EEEEcCCCcceeeeecCCCeE
Confidence            9999987655555665 5553

>KOG1920|consensus

Probab=98.49  E-value=2.4e-05  Score=91.65  Aligned_cols=200  Identities=17%  Similarity=0.220  Sum_probs=138.9

Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECC----CCc
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATD----SYH  535 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~----~~~  535 (711)
                      .+.|.++.|..++..++.+..+|.|.+-|..+......- .-...|.+++|+||+..++..+.++++.+-+-+    .-+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg-~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG-NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee-eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            468999999999999999999999999988765443322 246789999999999999999988887764321    001


Q ss_pred             e-------------------eEEeecC---------------------CCCeeEEEEcCCCCEEEEEE-----cCCcEEE
Q psy14440        536 P-------------------LRLFVGH---------------------YSDVDCVQFHPNSNYVATGS-----SDRTIRL  570 (711)
Q Consensus       536 ~-------------------~~~~~~h---------------------~~~V~~v~~sp~~~~latgs-----~Dg~I~i  570 (711)
                      +                   ...|.|.                     .+.=+.|+|-.||.|+|+..     ..+.|+|
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence            1                   1112211                     11224599999999999843     2389999


Q ss_pred             EECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCCCeEEEE----eeCCCCCEEEEEEeCCCCEE
Q psy14440        571 WDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAG---GDGNVHMWDLSNGHLLTL----LTGHTDVVRALCFSRDGNIL  643 (711)
Q Consensus       571 wD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs---~Dg~I~iwDl~sg~~i~~----l~~h~~~V~sl~fspdg~~L  643 (711)
                      ||.. |..-.+-....+--.+++|-|.|.++++-.   .|+.|.+|.- +|-.-..    +......|..|+|+.++..|
T Consensus       227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiL  304 (1265)
T KOG1920|consen  227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDIL  304 (1265)
T ss_pred             eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCCce
Confidence            9966 543322222334456899999999998763   4568999983 4433322    22233448999999999999


Q ss_pred             EE---EeCCCcEEEEeCCCCCC
Q psy14440        644 AS---SGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       644 as---gs~Dg~V~iWdl~~~~~  662 (711)
                      |+   ......|++|-+.+..-
T Consensus       305 Av~~~~~e~~~v~lwt~~NyhW  326 (1265)
T KOG1920|consen  305 AVVTSNLENSLVQLWTTGNYHW  326 (1265)
T ss_pred             eeeecccccceEEEEEecCeEE
Confidence            88   44455599999987543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.46  E-value=5.8e-07  Score=63.89  Aligned_cols=39  Identities=33%  Similarity=0.773  Sum_probs=37.2

Q ss_pred             CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        618 GHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       618 g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      |+++.++.+|.+.|++++|++++++|++|+.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4649|consensus

Probab=98.42  E-value=0.00016  Score=71.72  Aligned_cols=101  Identities=12%  Similarity=0.048  Sum_probs=67.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeec-------cC--ccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcC
Q psy14440        400 SILAVGFSESYIKLWSLVPQKLKAMK-------SS--DQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSP  470 (711)
Q Consensus       400 ~~LatG~~dg~I~vWdl~~~~~~~~~-------~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fsp  470 (711)
                      ++++.|+..+.+.--|..++++.-..       .+  --+..+++++..+.+++.+.+++.....+..-..-=......+
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~  103 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDF  103 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcC
Confidence            45555555555555555444432110       00  0133477888999999999999988777764332222334567


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEEec
Q psy14440        471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYKG  500 (711)
Q Consensus       471 dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~  500 (711)
                      ++..+..|+.|++.+..|..+..++...+.
T Consensus       104 ~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen  104 DGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             CCceEEEecCCCcEEEecccccceEEeccc
Confidence            899999999999999999998888877654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.41  E-value=8.3e-07  Score=63.08  Aligned_cols=39  Identities=38%  Similarity=0.816  Sum_probs=37.2

Q ss_pred             CcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q psy14440        576 GSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD  614 (711)
Q Consensus       576 ~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwD  614 (711)
                      |++++++.+|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.40  E-value=0.00017  Score=74.80  Aligned_cols=197  Identities=15%  Similarity=0.200  Sum_probs=141.4

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCe-EEEEECCCCeEEEEEecCCCCEE--EEEEcCCCCEEEEEE-----CCCeEEEEECC-
Q psy14440        463 VRKLSFSP-DRSLLLSCSQDNT-IRLWSLLLWRCLVVYKGHGHPVW--DIKFSPHGYYFASAG-----HDRMARLWATD-  532 (711)
Q Consensus       463 V~~l~fsp-dg~~L~s~s~Dg~-V~iwdl~t~~~~~~~~~h~~~V~--~v~~sp~g~~l~sgs-----~Dg~i~lwd~~-  532 (711)
                      ...++.+| .+..++.+-.-|+ ..+||..+++....+....+.-.  ...||++|++|++.-     ..|.|-|||.. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            45677888 5556666766665 77899999988876654322211  357999999998863     45899999999 


Q ss_pred             CCceeEEeecCCCCeeEEEEcCCCCEEEEEEc------------------CCcEEEEECCCCcEEEEee----CCCCCeE
Q psy14440        533 SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS------------------DRTIRLWDCVTGSHVRLLT----GHKAPVY  590 (711)
Q Consensus       533 ~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~------------------Dg~I~iwD~~~~~~v~~~~----~h~~~I~  590 (711)
                      +.+.+..+..|.-.-..+.+.|||..|+++..                  +-++.+.|..+|+.+....    -|...|.
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            66777888888888889999999988777532                  2346677888898876633    4788999


Q ss_pred             EEEEecCCCEEEEEeCCC-------cEEEEECCCCeEEEEee-------CCCCCEEEEEEeCCCCEEEEEe-CCCcEEEE
Q psy14440        591 ALSFSVCGRFLASAGGDG-------NVHMWDLSNGHLLTLLT-------GHTDVVRALCFSRDGNILASSG-QDCSVKLW  655 (711)
Q Consensus       591 ~la~spdg~~Lasgs~Dg-------~I~iwDl~sg~~i~~l~-------~h~~~V~sl~fspdg~~Lasgs-~Dg~V~iW  655 (711)
                      -++++.+|..++..-..|       .|.+++-  ++.+..+.       ...+.|-+|+++.+|.++++.| .-|.+.+|
T Consensus       167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             eEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence            999999998777665443       2444443  33233332       2346789999999998775554 57789999


Q ss_pred             eCCCCC
Q psy14440        656 DFAKLS  661 (711)
Q Consensus       656 dl~~~~  661 (711)
                      |..+..
T Consensus       245 d~~tg~  250 (305)
T PF07433_consen  245 DAATGR  250 (305)
T ss_pred             ECCCCC
Confidence            987754

>KOG0882|consensus

Probab=98.39  E-value=1.7e-06  Score=91.09  Aligned_cols=204  Identities=15%  Similarity=0.180  Sum_probs=147.0

Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeEEEEEecCCCCEEEEEEcCCCCEEEEEEC-CCeEEEEECCC
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL---WRCLVVYKGHGHPVWDIKFSPHGYYFASAGH-DRMARLWATDS  533 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t---~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~-Dg~i~lwd~~~  533 (711)
                      -|...|+.+..+ ..+++++++.||.++.|--..   -+.+..+..|...|.+++.+-+|..++|++. |..++++|+++
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            377777776654 567999999999999997543   2344556788899999999999999999887 99999999987


Q ss_pred             CceeEEeecCCCCeeEEEEcCCC---CEEEEEE-cCCcEEEEECCCCcE-EEEe-eCCCCCeEEEEEecCCCEEEEEeCC
Q psy14440        534 YHPLRLFVGHYSDVDCVQFHPNS---NYVATGS-SDRTIRLWDCVTGSH-VRLL-TGHKAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       534 ~~~~~~~~~h~~~V~~v~~sp~~---~~latgs-~Dg~I~iwD~~~~~~-v~~~-~~h~~~I~~la~spdg~~Lasgs~D  607 (711)
                      ...+..+....-+=.+-.++..|   ..|+++. .+|.+.++|-..+.| ...+ .-|..+|.++.+++-+..+++....
T Consensus        86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~  165 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS  165 (558)
T ss_pred             cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence            65543333211111111122223   1344433 578999999776543 2333 3589999999999999999999999


Q ss_pred             CcEEEEECCC------CeEEEEe---------eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        608 GNVHMWDLSN------GHLLTLL---------TGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       608 g~I~iwDl~s------g~~i~~l---------~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      |.|.-|....      ++....+         ....+...++.|+++|..+.+-+.|..||++++.+..-
T Consensus       166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence            9999998762      2222222         12235678999999999999999999999999987554

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.33  E-value=0.00012  Score=80.06  Aligned_cols=267  Identities=15%  Similarity=0.129  Sum_probs=145.2

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee-ec--cCccc--ccccccc-CCcEEEEEecC------CCeeEEEe
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKA-MK--SSDQL--QDIEMEC-DDILVRIMDER------NAETTRTL  456 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~-~~--~~~~~--~~l~~~~-~d~~i~i~d~~------~~~~~~~l  456 (711)
                      .|+++.|+.+..-||+|...|.|.||.+...+... ..  ...+.  ..+.... ....+.+-+..      .......+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58999999999999999999999999986543322 00  00000  0011111 12222222211      11223444


Q ss_pred             ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe--c------CCCCEEEEEEcC-----CC---CEEEEE
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK--G------HGHPVWDIKFSP-----HG---YYFASA  520 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~--~------h~~~V~~v~~sp-----~g---~~l~sg  520 (711)
                      ....++|++++.| |=.+++.|..+|.+.|.|++....+..-.  .      ....|+++.|+-     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            5568999999998 55599999999999999998777766532  1      234677888863     33   378899


Q ss_pred             ECCCeEEEEECC--C-Cc----eeEEeecCCCCeeEEE-EcCC-C-------------------CEEEEEEcCCcEEEEE
Q psy14440        521 GHDRMARLWATD--S-YH----PLRLFVGHYSDVDCVQ-FHPN-S-------------------NYVATGSSDRTIRLWD  572 (711)
Q Consensus       521 s~Dg~i~lwd~~--~-~~----~~~~~~~h~~~V~~v~-~sp~-~-------------------~~latgs~Dg~I~iwD  572 (711)
                      +..|.+.+|.+.  . +.    .......+.+.|..|. |+.+ |                   +-++..+.+..||++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            999999999764  1 11    1111223555655554 3221 1                   2244445588899999


Q ss_pred             CCCCcEEEEeeCCCCCeEEEEEe-----cCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCC----CCEEEEEEeCCCCEE
Q psy14440        573 CVTGSHVRLLTGHKAPVYALSFS-----VCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHT----DVVRALCFSRDGNIL  643 (711)
Q Consensus       573 ~~~~~~v~~~~~h~~~I~~la~s-----pdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~----~~V~sl~fspdg~~L  643 (711)
                      .-+.+..............+++-     ..+..|++-..+|.|++|.+-.-+.+..+..+.    ..+...+++.+|..+
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~  321 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF  321 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence            88887765544222233334442     356778888899999999999988888877543    234567789999988


Q ss_pred             EEEeCCCcEEEEeC
Q psy14440        644 ASSGQDCSVKLWDF  657 (711)
Q Consensus       644 asgs~Dg~V~iWdl  657 (711)
                      +-.|.. .+.+|.+
T Consensus       322 ~~~gps-E~~l~sv  334 (395)
T PF08596_consen  322 YWTGPS-EIQLFSV  334 (395)
T ss_dssp             EE-SSS-EEEEEEE
T ss_pred             EEeCcc-cEEEEEE
Confidence            776643 4444433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617|consensus

Probab=98.27  E-value=9.2e-05  Score=83.43  Aligned_cols=260  Identities=12%  Similarity=0.120  Sum_probs=151.7

Q ss_pred             CCceEEEEECCCCCEEEEEeC----CCeEEEEeCCCCce---------eeeccCccccccccccCCcEEEEEecCCCeeE
Q psy14440        387 RQQVTCAEISEDVSILAVGFS----ESYIKLWSLVPQKL---------KAMKSSDQLQDIEMECDDILVRIMDERNAETT  453 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~----dg~I~vWdl~~~~~---------~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  453 (711)
                      ...-+-..|+|...++|+++-    .|.|.||--.+..-         .++.+++..-.++.+-.-|.+.+|...+.+.-
T Consensus        15 davsti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             cccccccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence            334445678888888888763    57888886544322         12344555556777888899999998888877


Q ss_pred             EEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE--ecC----CCCEEEEEEcCCCC------EEEEEE
Q psy14440        454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY--KGH----GHPVWDIKFSPHGY------YFASAG  521 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~--~~h----~~~V~~v~~sp~g~------~l~sgs  521 (711)
                      .....|..+|..+.||++|..|+++..-|.|.+|.+.....+...  -.|    .-..||...++++.      ..++.+
T Consensus        95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg  174 (1416)
T KOG3617|consen   95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG  174 (1416)
T ss_pred             eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence            777889999999999999999999999999999987632222211  112    12345666666632      233333


Q ss_pred             CCCeEE-EEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC----------CCCCeE
Q psy14440        522 HDRMAR-LWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG----------HKAPVY  590 (711)
Q Consensus       522 ~Dg~i~-lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~----------h~~~I~  590 (711)
                      .+..+- .++.+.....+... |.       =.++|..++.++.+|+|+..| +.|++....+.          ....|.
T Consensus       175 De~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~~~GtVyyvd-q~g~~~~V~k~dS~vQmLf~~~~eai~  245 (1416)
T KOG3617|consen  175 DESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAGKSGTVYYVD-QNGRQRTVHKLDSEVQMLFMGYCEAIS  245 (1416)
T ss_pred             chhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEcCCceEEEEc-CCCcEEEEEEccchHHHHHhcccceEE
Confidence            333322 33322111111111 11       135778888888899998888 45555444331          122233


Q ss_pred             EEEEe-cCCCEEE-----------------EEeCCCcEEEEECCCCeEEEEee---CCCCCEEEEEEeCCCCEEEEEeCC
Q psy14440        591 ALSFS-VCGRFLA-----------------SAGGDGNVHMWDLSNGHLLTLLT---GHTDVVRALCFSRDGNILASSGQD  649 (711)
Q Consensus       591 ~la~s-pdg~~La-----------------sgs~Dg~I~iwDl~sg~~i~~l~---~h~~~V~sl~fspdg~~Lasgs~D  649 (711)
                      ++.-. .+.-+++                 .|+..|.|.+=.. +|-+-..-+   .....+++++++..+..|+.|...
T Consensus       246 ~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEs-sGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~  324 (1416)
T KOG3617|consen  246 IIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSES-SGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKE  324 (1416)
T ss_pred             EEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccc-cccccCCcchhhhcCCceEEEEEeccceEEEecccC
Confidence            22111 1100000                 1112222221111 110000000   123568999999999999999999


Q ss_pred             CcEEEEe
Q psy14440        650 CSVKLWD  656 (711)
Q Consensus       650 g~V~iWd  656 (711)
                      |.|.+|-
T Consensus       325 gnv~~w~  331 (1416)
T KOG3617|consen  325 GNVTIWL  331 (1416)
T ss_pred             CcEEEee
Confidence            9999995

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.26  E-value=0.00051  Score=78.01  Aligned_cols=229  Identities=10%  Similarity=0.094  Sum_probs=138.7

Q ss_pred             cccccccCCcEEEEEecCCCeeEEEeecccCC--EEEEEEcC--CCCEEEEEe---------CCCeEEEEECCCCeEEEE
Q psy14440        431 QDIEMECDDILVRIMDERNAETTRTLVGHEGP--VRKLSFSP--DRSLLLSCS---------QDNTIRLWSLLLWRCLVV  497 (711)
Q Consensus       431 ~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~--V~~l~fsp--dg~~L~s~s---------~Dg~V~iwdl~t~~~~~~  497 (711)
                      ..+.+++.++.++.+|..+++....+......  -..+.-+|  .+..++.++         .+|.|..+|..+++.+..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            45556667889999999999888776543220  01111111  124455554         368899999999998887


Q ss_pred             EecCCC--------------------CEE-EEEEcCCCCEEEEEECCC------------------eEEEEECCCCceeE
Q psy14440        498 YKGHGH--------------------PVW-DIKFSPHGYYFASAGHDR------------------MARLWATDSYHPLR  538 (711)
Q Consensus       498 ~~~h~~--------------------~V~-~v~~sp~g~~l~sgs~Dg------------------~i~lwd~~~~~~~~  538 (711)
                      +.....                    .|| ..++.+.+..++.++.++                  .+.-+|.++++.+-
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            754211                    111 233344456777776555                  78889999999887


Q ss_pred             EeecCCCCee------EEEEc----CCCC---EEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEE-
Q psy14440        539 LFVGHYSDVD------CVQFH----PNSN---YVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASA-  604 (711)
Q Consensus       539 ~~~~h~~~V~------~v~~s----p~~~---~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasg-  604 (711)
                      .+..-..+..      ...+.    -++.   .+++++.+|.+...|.++|+.+-.....   ...++.++  ..++.+ 
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~  345 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGA  345 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEcc
Confidence            7642111110      01111    1333   6788888999999999999987765421   11223333  223322 


Q ss_pred             -----------------eCCCcEEEEECCCCeEEEEeeCCC--------CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        605 -----------------GGDGNVHMWDLSNGHLLTLLTGHT--------DVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       605 -----------------s~Dg~I~iwDl~sg~~i~~l~~h~--------~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                                       ..+|.|.-.|+.+|+.+-......        .....-...-.+..|+.++.||.|+.+|..+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t  425 (488)
T cd00216         346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATT  425 (488)
T ss_pred             ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence                             246789999999999877665321        1111111122467888899999999999887


Q ss_pred             CCCcc
Q psy14440        660 LSDEV  664 (711)
Q Consensus       660 ~~~~~  664 (711)
                      .....
T Consensus       426 G~~lW  430 (488)
T cd00216         426 GKELW  430 (488)
T ss_pred             Cceee
Confidence            65543

The alignment model contains an 8-bladed beta-propeller.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.24  E-value=0.00056  Score=74.35  Aligned_cols=216  Identities=21%  Similarity=0.168  Sum_probs=120.8

Q ss_pred             cEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cC----------------C
Q psy14440        440 ILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK-GH----------------G  502 (711)
Q Consensus       440 ~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~-~h----------------~  502 (711)
                      +.+.++|..+++....... ...+....|||+|+.++... ++.|.++++.++...+... |.                -
T Consensus        23 ~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~  100 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF  100 (353)
T ss_dssp             EEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred             eeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence            4566677766554433332 67788999999999988875 5789999988775544322 20                0


Q ss_pred             CCEEEEEEcCCCCEEEEEECC-C-----------------------------------eEEEEECCCCceeEEe-----e
Q psy14440        503 HPVWDIKFSPHGYYFASAGHD-R-----------------------------------MARLWATDSYHPLRLF-----V  541 (711)
Q Consensus       503 ~~V~~v~~sp~g~~l~sgs~D-g-----------------------------------~i~lwd~~~~~~~~~~-----~  541 (711)
                      ..-..+.|||+|++|+....| .                                   .+.++|+.+++....-     .
T Consensus       101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~  180 (353)
T PF00930_consen  101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLN  180 (353)
T ss_dssp             SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHH
T ss_pred             ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccC
Confidence            112457899999998876422 1                                   1333455444332111     1


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEEc--C---CcEEEEECCCCcEEEEeeC-CCCC---eEEEEEe-cCC-CEEEEEeCCC--
Q psy14440        542 GHYSDVDCVQFHPNSNYVATGSS--D---RTIRLWDCVTGSHVRLLTG-HKAP---VYALSFS-VCG-RFLASAGGDG--  608 (711)
Q Consensus       542 ~h~~~V~~v~~sp~~~~latgs~--D---g~I~iwD~~~~~~v~~~~~-h~~~---I~~la~s-pdg-~~Lasgs~Dg--  608 (711)
                      ....-+..+.|.++++.|+..-.  +   ..+.++|..++.+...+.. ..+.   .....|. +++ .+|.....||  
T Consensus       181 ~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~  260 (353)
T PF00930_consen  181 PQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYR  260 (353)
T ss_dssp             TSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSE
T ss_pred             CCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCc
Confidence            22334778899998884444332  2   2367788887765433321 2222   2245554 554 4555555677  


Q ss_pred             cEEEEECCCCeEEEEeeCCCCCEEE-EEEeCCCCEEE-EEeCC--CcEEEEeCC
Q psy14440        609 NVHMWDLSNGHLLTLLTGHTDVVRA-LCFSRDGNILA-SSGQD--CSVKLWDFA  658 (711)
Q Consensus       609 ~I~iwDl~sg~~i~~l~~h~~~V~s-l~fspdg~~La-sgs~D--g~V~iWdl~  658 (711)
                      .|.+++...+.. ..+....-.|.. +.|+.+++.|+ +|..+  +.-.||.+.
T Consensus       261 hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~  313 (353)
T PF00930_consen  261 HLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS  313 (353)
T ss_dssp             EEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred             EEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence            566667666653 345444455644 67888876554 44442  345555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.18  E-value=0.00011  Score=80.96  Aligned_cols=113  Identities=19%  Similarity=0.244  Sum_probs=81.3

Q ss_pred             CCeeEEEEcC-CCCEEEEE----EcCCc----EEEEECCCCcEEEE--e-eCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q psy14440        545 SDVDCVQFHP-NSNYVATG----SSDRT----IRLWDCVTGSHVRL--L-TGHKAPVYALSFSVCGRFLASAGGDGNVHM  612 (711)
Q Consensus       545 ~~V~~v~~sp-~~~~latg----s~Dg~----I~iwD~~~~~~v~~--~-~~h~~~I~~la~spdg~~Lasgs~Dg~I~i  612 (711)
                      .+..++.|+- +.+.+.|.    +.+|.    -.+|++..++..+.  . ....+.|.|.+++|+...|+.|+.||+|.+
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            3445667765 34444443    23443    34677665543221  1 146788999999999999999999999999


Q ss_pred             EECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        613 WDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       613 wDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ||...+...  +....-..+.++|+|+|.++++|+..|.+.+||+.-
T Consensus       286 yD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  286 YDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            998776433  223345578999999999999999999999999864

>KOG1008|consensus

Probab=98.16  E-value=1.2e-06  Score=95.79  Aligned_cols=198  Identities=17%  Similarity=0.268  Sum_probs=129.0

Q ss_pred             CceEEEEECCCC--CEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEE
Q psy14440        388 QQVTCAEISEDV--SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRK  465 (711)
Q Consensus       388 ~~V~~l~fs~dg--~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~  465 (711)
                      ..+.|++++-+.  .++++|..+|.|.+-++....                           .+  .-....+|...+++
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h---------------------------dS--s~E~tp~~ar~Ct~  107 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH---------------------------DS--SAEVTPGYARPCTS  107 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcc---------------------------cc--cceecccccccccc
Confidence            456777776544  478899999988887763211                           00  12234567889999


Q ss_pred             EEEcC-CCCEEEEEe----CCCeEEEEECCCCe----EEEEEec-CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q psy14440        466 LSFSP-DRSLLLSCS----QDNTIRLWSLLLWR----CLVVYKG-HGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH  535 (711)
Q Consensus       466 l~fsp-dg~~L~s~s----~Dg~V~iwdl~t~~----~~~~~~~-h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~  535 (711)
                      ++|++ |.+.|+.|-    .|..+.|||+.++-    ....+.+ ......+++|-.+.+.+++|...+.+.++|++...
T Consensus       108 lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~  187 (783)
T KOG1008|consen  108 LAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL  187 (783)
T ss_pred             cccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh
Confidence            99998 556677663    25679999997651    1112222 33455688999888899999999999999998321


Q ss_pred             eeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEE-CCCC-cEEEEeeCCC----CCeEEEEEecCCC-EEEEEe-C
Q psy14440        536 PLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWD-CVTG-SHVRLLTGHK----APVYALSFSVCGR-FLASAG-G  606 (711)
Q Consensus       536 ~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD-~~~~-~~v~~~~~h~----~~I~~la~spdg~-~Lasgs-~  606 (711)
                       .+...-....+..+...| .++|++... ||.|.+|| .++- +.++.+....    ..+..++|+|... .+++.. .
T Consensus       188 -~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd  265 (783)
T KOG1008|consen  188 -DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD  265 (783)
T ss_pred             -hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC
Confidence             111111234566777888 778887766 99999999 3332 2222222222    2488999998532 444444 4


Q ss_pred             CCcEEEEECC
Q psy14440        607 DGNVHMWDLS  616 (711)
Q Consensus       607 Dg~I~iwDl~  616 (711)
                      .++|+++|+.
T Consensus       266 S~tIrlydi~  275 (783)
T KOG1008|consen  266 SITIRLYDIC  275 (783)
T ss_pred             cceEEEeccc
Confidence            5789999985

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.16  E-value=0.0011  Score=73.43  Aligned_cols=194  Identities=13%  Similarity=0.156  Sum_probs=105.3

Q ss_pred             EEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-------EecCCCCEEEEEEcCC
Q psy14440        441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV-------YKGHGHPVWDIKFSPH  513 (711)
Q Consensus       441 ~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~-------~~~h~~~V~~v~~sp~  513 (711)
                      .|++|+. .|+.+..+.--.+.|.++.|+.+ ..|++...||++++||+. |+....       .......+....+..+
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence            4666664 34444444433389999999875 456677799999999986 333111       1111122223334445


Q ss_pred             CCEEEEEECCCeEEEEECCCCc-eeEEeecCCC---------CeeE-EEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEe
Q psy14440        514 GYYFASAGHDRMARLWATDSYH-PLRLFVGHYS---------DVDC-VQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLL  582 (711)
Q Consensus       514 g~~l~sgs~Dg~i~lwd~~~~~-~~~~~~~h~~---------~V~~-v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~  582 (711)
                      |-.+++  .++.+.+..-.... ..+.+..-..         .... ..++.+....+....++.+.+.+-...+.   +
T Consensus       139 GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i  213 (410)
T PF04841_consen  139 GIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I  213 (410)
T ss_pred             CEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence            533333  34544444322211 1111111000         0000 22333444444444445555343222211   1


Q ss_pred             eCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCC-CCCEEEEEEeCCCCEE
Q psy14440        583 TGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGH-TDVVRALCFSRDGNIL  643 (711)
Q Consensus       583 ~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h-~~~V~sl~fspdg~~L  643 (711)
                       ...+++..+++||+|++||.-..+|.+.|.+..-.+.+..+... ......+.|.-++..+
T Consensus       214 -~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~  274 (410)
T PF04841_consen  214 -DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV  274 (410)
T ss_pred             -cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence             12468999999999999999999999999987666666666544 3456678887654433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.15  E-value=0.0026  Score=70.67  Aligned_cols=245  Identities=16%  Similarity=0.120  Sum_probs=129.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEE
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSF  468 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~f  468 (711)
                      .+....+||||++||.+-+.+                          |++...++++|..+++.+........ ..++.|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~--------------------------G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W  177 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDG--------------------------GSEWYTLRVFDLETGKFLPDGIENPK-FSSVSW  177 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEET--------------------------TSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEE
T ss_pred             EeeeeeECCCCCEEEEEecCC--------------------------CCceEEEEEEECCCCcCcCCcccccc-cceEEE
Confidence            344678899999998764321                          12223344444445544332211111 123999


Q ss_pred             cCCCCEEEEEeCCC-----------eEEEEECCCCeE--EEEEecCCCC--EEEEEEcCCCCEEEEEECC----CeEEEE
Q psy14440        469 SPDRSLLLSCSQDN-----------TIRLWSLLLWRC--LVVYKGHGHP--VWDIKFSPHGYYFASAGHD----RMARLW  529 (711)
Q Consensus       469 spdg~~L~s~s~Dg-----------~V~iwdl~t~~~--~~~~~~h~~~--V~~v~~sp~g~~l~sgs~D----g~i~lw  529 (711)
                      .+|++.|+....+.           .|+.|.+.+...  ...+......  ...+..+.++++++..+..    ..+.+.
T Consensus       178 ~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~  257 (414)
T PF02897_consen  178 SDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLL  257 (414)
T ss_dssp             CTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEE
T ss_pred             eCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEE
Confidence            99988776554332           378888876532  3556554433  5678899999987765432    346777


Q ss_pred             ECCCC----ceeEEeecCCCCeeEEEEcCCCCEEEEEE---cCCcEEEEECCCCcE---EEEeeCCCCCeEEEEEecCCC
Q psy14440        530 ATDSY----HPLRLFVGHYSDVDCVQFHPNSNYVATGS---SDRTIRLWDCVTGSH---VRLLTGHKAPVYALSFSVCGR  599 (711)
Q Consensus       530 d~~~~----~~~~~~~~h~~~V~~v~~sp~~~~latgs---~Dg~I~iwD~~~~~~---v~~~~~h~~~I~~la~spdg~  599 (711)
                      ++..+    ...+.+......+....-+.++.+++...   ..+.|...++.+...   ...+..+...+.-..+...+.
T Consensus       258 d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~  337 (414)
T PF02897_consen  258 DLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD  337 (414)
T ss_dssp             ECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT
T ss_pred             eccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC
Confidence            87764    23444444444444433333444444332   246677778877652   335555655433333344455


Q ss_pred             EEEEE-eCCC--cEEEEECCCCeEEEEeeCC-CCCEEEEEEeCCCCE-EEEEe-C--CCcEEEEeCCCC
Q psy14440        600 FLASA-GGDG--NVHMWDLSNGHLLTLLTGH-TDVVRALCFSRDGNI-LASSG-Q--DCSVKLWDFAKL  660 (711)
Q Consensus       600 ~Lasg-s~Dg--~I~iwDl~sg~~i~~l~~h-~~~V~sl~fspdg~~-Lasgs-~--Dg~V~iWdl~~~  660 (711)
                      +|+.. ..++  .|++||+..+.....+..- .+.|..+....+++. .++.+ .  -++|..||+.+.
T Consensus       338 ~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~  406 (414)
T PF02897_consen  338 YLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG  406 (414)
T ss_dssp             EEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred             EEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            55544 3443  7899999845555544433 345666665565553 33332 2  356777787764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.14  E-value=0.00056  Score=77.20  Aligned_cols=186  Identities=11%  Similarity=0.070  Sum_probs=121.5

Q ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC----CeEEEEECCCCceeEE
Q psy14440        465 KLSFSPDRSLLLSCS-QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD----RMARLWATDSYHPLRL  539 (711)
Q Consensus       465 ~l~fspdg~~L~s~s-~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D----g~i~lwd~~~~~~~~~  539 (711)
                      .+-+++||+.+...+ ..+.+.+.|..+.+....+..-. ....+.++++|+++++.+.+    +++..-+......+..
T Consensus       197 ~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv  275 (635)
T PRK02888        197 RIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV  275 (635)
T ss_pred             ccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence            345677887664433 35778899999888777665433 44568899999998887632    1222222222111111


Q ss_pred             eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC----C-cEEEEeeCCCCCeEEEEEecCCCEEEEEe-CCCcEEEE
Q psy14440        540 FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT----G-SHVRLLTGHKAPVYALSFSVCGRFLASAG-GDGNVHMW  613 (711)
Q Consensus       540 ~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~----~-~~v~~~~~h~~~I~~la~spdg~~Lasgs-~Dg~I~iw  613 (711)
                      |.-  ..+  -++.++|++...+  +++|.++|..+    + ..++.+. -......+++||||+++++++ .+++|.|.
T Consensus       276 fni--~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVI  348 (635)
T PRK02888        276 FNI--ARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVI  348 (635)
T ss_pred             Ech--HHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence            110  000  0233477776663  67899999998    3 4444443 334567899999999988766 48899999


Q ss_pred             ECCCCe------------EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        614 DLSNGH------------LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       614 Dl~sg~------------~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      |+.+.+            .+.+..--.+ -...+|..+|+...|--.|..|..||+.+
T Consensus       349 Dv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        349 DVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence            998754            2344433223 34678999999889999999999999986

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.14  E-value=0.0016  Score=66.65  Aligned_cols=199  Identities=16%  Similarity=0.202  Sum_probs=119.4

Q ss_pred             EEeecccCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecC-CCCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy14440        454 RTLVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSLLLWRCLVVYKGH-GHPVWDIKFSPHGYYFASAGHDRMARLWAT  531 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~-~L~s~s~Dg~V~iwdl~t~~~~~~~~~h-~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~  531 (711)
                      +.+.+-...+.+++|+|+.+ ++++....+.|..++.. ++.+..+.-. .+..-.|++..++.++++.-.++.+.++++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            34556666799999999866 45555667888888874 7888777644 356788999888877776667899999988


Q ss_pred             CCCc------eeEEee-----cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC---CcEEEEe--------eCCCCCe
Q psy14440        532 DSYH------PLRLFV-----GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT---GSHVRLL--------TGHKAPV  589 (711)
Q Consensus       532 ~~~~------~~~~~~-----~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~---~~~v~~~--------~~h~~~I  589 (711)
                      ....      ....+.     .+...+..++|++.++.|+++....-.+||.+..   ...+...        ......+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            4321      111121     2456689999999888888888777777777654   2222211        1134468


Q ss_pred             EEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEeeCCC---------CCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy14440        590 YALSFSVC-GRFLASAGGDGNVHMWDLSNGHLLTLLTGHT---------DVVRALCFSRDGNILASSGQDCSVKLW  655 (711)
Q Consensus       590 ~~la~spd-g~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~---------~~V~sl~fspdg~~Lasgs~Dg~V~iW  655 (711)
                      .+++++|. |++++..+....|.++| .+|+.+..+.-..         ..--.|+|.++|++.++ ++-+..++|
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            88999985 56777777888999999 6888777664222         24678999999976655 455555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.08  E-value=0.0017  Score=73.75  Aligned_cols=220  Identities=13%  Similarity=0.116  Sum_probs=135.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeecc-------------Ccc--cccccccc---------CCcEEEEEecCCCeeEEE
Q psy14440        400 SILAVGFSESYIKLWSLVPQKLKAMKS-------------SDQ--LQDIEMEC---------DDILVRIMDERNAETTRT  455 (711)
Q Consensus       400 ~~LatG~~dg~I~vWdl~~~~~~~~~~-------------~~~--~~~l~~~~---------~d~~i~i~d~~~~~~~~~  455 (711)
                      ..++.++.+|.|.-+|..+++..-...             +..  ...+.+++         .++.+..+|..+++....
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            566677778888888877665432111             000  11122222         356788889988888776


Q ss_pred             eecccC--------------------CE-EEEEEcCCCCEEEEEeCCC------------------eEEEEECCCCeEEE
Q psy14440        456 LVGHEG--------------------PV-RKLSFSPDRSLLLSCSQDN------------------TIRLWSLLLWRCLV  496 (711)
Q Consensus       456 l~~h~~--------------------~V-~~l~fspdg~~L~s~s~Dg------------------~V~iwdl~t~~~~~  496 (711)
                      +.....                    .| .+.++.+.+..++.++.++                  .|..+|..+++.+-
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            643211                    11 1234444566777777665                  79999999999988


Q ss_pred             EEecCCCCEEE--E----EEc----CCCC---EEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEE-
Q psy14440        497 VYKGHGHPVWD--I----KFS----PHGY---YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATG-  562 (711)
Q Consensus       497 ~~~~h~~~V~~--v----~~s----p~g~---~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latg-  562 (711)
                      .++.-...++.  .    .+.    -+|.   .+++++.+|.+...|.++++.+......   ...++.++  +.++.+ 
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~  345 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGA  345 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEcc
Confidence            87532221211  0    111    1232   6778889999999999999987765321   11223333  233332 


Q ss_pred             -----------------EcCCcEEEEECCCCcEEEEeeCCC--------CCe--EEEEEecCCCEEEEEeCCCcEEEEEC
Q psy14440        563 -----------------SSDRTIRLWDCVTGSHVRLLTGHK--------APV--YALSFSVCGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       563 -----------------s~Dg~I~iwD~~~~~~v~~~~~h~--------~~I--~~la~spdg~~Lasgs~Dg~I~iwDl  615 (711)
                                       ..+|.|.-.|+.+|+.+-......        ...  ..++  -.+..|++++.||.|+.+|.
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~  423 (488)
T cd00216         346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDA  423 (488)
T ss_pred             ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEEC
Confidence                             235788889999998776654321        111  1122  24678999999999999999


Q ss_pred             CCCeEEEEeeC
Q psy14440        616 SNGHLLTLLTG  626 (711)
Q Consensus       616 ~sg~~i~~l~~  626 (711)
                      .+|+.+.+++.
T Consensus       424 ~tG~~lW~~~~  434 (488)
T cd00216         424 TTGKELWKFRT  434 (488)
T ss_pred             CCCceeeEEEC
Confidence            99999988764

The alignment model contains an 8-bladed beta-propeller.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.06  E-value=0.00021  Score=78.97  Aligned_cols=204  Identities=18%  Similarity=0.167  Sum_probs=129.6

Q ss_pred             EEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEe---CC-CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCE
Q psy14440        441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCS---QD-NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYY  516 (711)
Q Consensus       441 ~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s---~D-g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~  516 (711)
                      .+.+.|.. +.....+..-...+..-+|++++..++-.+   .. ..+.++++.+++...... ..+.-..-+|+|+|+.
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~  251 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK  251 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence            34444544 666666666667788899999998765442   22 469999998877655544 2233335789999987


Q ss_pred             EEEEE-CCCeE--EEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCcEEEEeeCCCCCeE
Q psy14440        517 FASAG-HDRMA--RLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD-R--TIRLWDCVTGSHVRLLTGHKAPVY  590 (711)
Q Consensus       517 l~sgs-~Dg~i--~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D-g--~I~iwD~~~~~~v~~~~~h~~~I~  590 (711)
                      ++.++ .||..  .+.|+..+...+ +....+.-..=.|+|+|++|+..++. |  .|.++|...+.. +.++...+.-.
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~  329 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS  329 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence            77654 56654  455666665333 43333333466789999998887753 3  477778766655 33333333333


Q ss_pred             EEEEecCCCEEEEEeCC-Cc--EEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC
Q psy14440        591 ALSFSVCGRFLASAGGD-GN--VHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQD  649 (711)
Q Consensus       591 ~la~spdg~~Lasgs~D-g~--I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D  649 (711)
                      .-.|||||++|+..+.. |.  |.+.|+.++..+..+. +......-+|.++|+.+...+..
T Consensus       330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         330 NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence            77899999999877643 44  7777877766544443 23334456778888766655433

>KOG1333|consensus

Probab=98.01  E-value=1.5e-05  Score=75.45  Aligned_cols=139  Identities=12%  Similarity=0.079  Sum_probs=103.7

Q ss_pred             HHHHHHHHHhhCCCchhHHHHHhhhccCCCCCCCCCccccccccccccCCChhHHHHHHHHHHHHHhhhcc-cchhhhhh
Q psy14440         91 TLITMLKLLRQYNLRGTEEQLKKEINVNDLGIDPNDSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLD-VYKYELGL  169 (711)
Q Consensus        91 ~~~~v~~yl~k~g~~~~e~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~ld-~~k~el~~  169 (711)
                      +...|.+||..|||+.|-++|.+|++.......+.|.-|. .+....+..|.+.....+..|.+-|.++|| +|++.+..
T Consensus         8 tDelvReYL~frgf~~tLkalD~E~~~~Ke~~frvdrivd-q~~~a~q~~Dl~aLr~~W~~l~~r~Fs~Le~~y~~~~~k   86 (241)
T KOG1333|consen    8 TDELVREYLLFRGFTHTLKALDAEIKADKEKGFRVDRIVD-QLQQAMQVYDLAALRDYWSYLERRLFSRLEDIYRPTIHK   86 (241)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            4457999999999999999999999877665555443222 222223445788888999999999999995 99999999


Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHhcCCCcchHHHHHHHHhcCCCcccccccHHHHHhh
Q psy14440        170 VLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFR  232 (711)
Q Consensus       170 ~l~p~f~~~yl~lv~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  232 (711)
                      +--.+|.++-.-.|++++.++|.+||+|-+.+..  -+.+++.-+..-=..|.++.+..+.|-
T Consensus        87 le~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lq--nq~eWkDWF~fPf~~~a~~tppf~~~F  147 (241)
T KOG1333|consen   87 LETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQ--NQAEWKDWFVLPFLPSAKDTPPFRKYF  147 (241)
T ss_pred             HHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHh--cchhhhhheecccCCCCCCCccHHHHH
Confidence            9999999999999999999999999999885422  233444444444444555555444443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.98  E-value=0.00091  Score=74.26  Aligned_cols=230  Identities=13%  Similarity=0.097  Sum_probs=120.9

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      .....+.........+.++|+|+++++++ ||...|+....                               ....    
T Consensus        23 l~~k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~-------------------------------~r~k----   66 (443)
T PF04053_consen   23 LSVKELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALA-------------------------------WRNK----   66 (443)
T ss_dssp             ---EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTT-------------------------------TEEE----
T ss_pred             EEeccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccC-------------------------------Cccc----
Confidence            33444555556688999999999999954 55555655211                               1111    


Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                       ..+.-....|...+ .+++-...++|.|+.--+.+....++. ...+..+-.   |..|+..+.+ .|.+||..+++.+
T Consensus        67 -~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i  139 (443)
T PF04053_consen   67 -AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLI  139 (443)
T ss_dssp             -EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EE
T ss_pred             -ccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHccee
Confidence             12344578898855 466666688899974322222223332 223444432   7777777654 8999999999999


Q ss_pred             EEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-----------cEEEEeeCCCCCeEEEEEecCCCEEEEEeC
Q psy14440        538 RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG-----------SHVRLLTGHKAPVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       538 ~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~-----------~~v~~~~~h~~~I~~la~spdg~~Lasgs~  606 (711)
                      +.+..  ..|..|.|++++++++..+.+ ++.|++....           ..+..+..-...|.+.+|..+ -++.| +.
T Consensus       140 ~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYt-T~  214 (443)
T PF04053_consen  140 RRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYT-TS  214 (443)
T ss_dssp             EEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE--T
T ss_pred             eEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEE-cC
Confidence            98863  348999999999999999854 6778775433           123333323567888888755 33333 33


Q ss_pred             CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        607 DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       607 Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      . +|+-  +-.|+.. .+..-...++=+...+..+.+.....|+.|..+.+..
T Consensus       215 ~-~lkY--l~~Ge~~-~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  215 N-HLKY--LVNGETG-IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             T-EEEE--EETTEEE-EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             C-eEEE--EEcCCcc-eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence            3 6665  3344432 2222234667777887778888888999999888753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621|consensus

Probab=97.96  E-value=0.0013  Score=73.59  Aligned_cols=262  Identities=15%  Similarity=0.106  Sum_probs=141.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeecc------------CccccccccccCCcEEEEEecCCCeeEE---
Q psy14440        390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKS------------SDQLQDIEMECDDILVRIMDERNAETTR---  454 (711)
Q Consensus       390 V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~------------~~~~~~l~~~~~d~~i~i~d~~~~~~~~---  454 (711)
                      |.=-+++..+++++.|++-|.+.+|+-.++.++..+.            +.....+++++..+.|.++-........   
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~  115 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY  115 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence            3333456677899999999999999987766554433            2333445677888888888655422211   


Q ss_pred             ---EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----EEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEE
Q psy14440        455 ---TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR----CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMAR  527 (711)
Q Consensus       455 ---~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~----~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~  527 (711)
                         .-..|...|++++|++|+..+++|...|+|.+-.+.+..    ....+-.-.+.|-.+... ++ ++++++-- ...
T Consensus       116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~-~LLVStl~-r~~  192 (726)
T KOG3621|consen  116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QS-YLLVSTLT-RCI  192 (726)
T ss_pred             eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cc-eehHhhhh-hhh
Confidence               112478899999999999999999999999998887620    111222235566566554 23 33333322 234


Q ss_pred             EEECCCCceeEEeec-CCCC-eeEEEEcC-----CCCEEEEEEcCCcEEEEECC-CCcEEEEeeC-------------CC
Q psy14440        528 LWATDSYHPLRLFVG-HYSD-VDCVQFHP-----NSNYVATGSSDRTIRLWDCV-TGSHVRLLTG-------------HK  586 (711)
Q Consensus       528 lwd~~~~~~~~~~~~-h~~~-V~~v~~sp-----~~~~latgs~Dg~I~iwD~~-~~~~v~~~~~-------------h~  586 (711)
                      +++++.....++=.. ..+. -...+|-|     +.-.|+++-  --.|+|.++ .|..++++.-             +.
T Consensus       193 Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR--PG~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~  270 (726)
T KOG3621|consen  193 LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR--PGLRLWEADFAGEVIKTHQFKDALARPPAPEIPIR  270 (726)
T ss_pred             eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEec--CCCceEEeecceeEEEeeehhhhhccCCCCcccCC
Confidence            555553321111000 1110 12233333     223444443  335777664 2444443210             11


Q ss_pred             C----------------CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCC
Q psy14440        587 A----------------PVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDC  650 (711)
Q Consensus       587 ~----------------~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg  650 (711)
                      .                ....+.+- .+..+.+-++-| |+|+|..+.+.+.-..+ ...|.++  +.+|+-|++-..||
T Consensus       271 s~esp~~~~~~~~~q~ls~~k~~~l-~~~~vLa~te~G-iyv~d~~~~~v~l~se~-~~DI~dV--s~~~neiFvL~~d~  345 (726)
T KOG3621|consen  271 SLESPNQRSLPSGTQHLSLSKSSTL-HSDRVLAWTEVG-IYVFDSNNSQVYLWSEG-GHDILDV--SHCGNEIFVLNLDR  345 (726)
T ss_pred             CcCCccccCCCCCccccccceeEEe-ecceEEEeecce-EEEEEeccceEEEeecC-CCceeEE--eecCceEEEEecCC
Confidence            1                00011111 122333333434 88888877665443322 2334444  44566666667777


Q ss_pred             cEEEEeCCCCC
Q psy14440        651 SVKLWDFAKLS  661 (711)
Q Consensus       651 ~V~iWdl~~~~  661 (711)
                      .+++..+.+..
T Consensus       346 ~l~~~sv~s~q  356 (726)
T KOG3621|consen  346 GLKVESVASRQ  356 (726)
T ss_pred             ceeEEEeehhH
Confidence            77777765543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.96  E-value=0.00028  Score=77.79  Aligned_cols=112  Identities=17%  Similarity=0.286  Sum_probs=81.6

Q ss_pred             EEEEEEcC-CCCEEEEE----ECCCe----EEEEECCCCceeEE---eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEE
Q psy14440        505 VWDIKFSP-HGYYFASA----GHDRM----ARLWATDSYHPLRL---FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWD  572 (711)
Q Consensus       505 V~~v~~sp-~g~~l~sg----s~Dg~----i~lwd~~~~~~~~~---~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD  572 (711)
                      ..++.|+- +.+.+.+.    +.+|.    -++|++...+.-+.   -....+.|.|++++|+...++.|+.||+|.+||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            35677776 44455443    23343    34566654432221   124678899999999999999999999999999


Q ss_pred             CCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q psy14440        573 CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNG  618 (711)
Q Consensus       573 ~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg  618 (711)
                      ...+...  +....-..+.++|+|+|.++++|+..|.+.+||+.-.
T Consensus       288 ~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  288 TTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            8777433  3345566889999999999999999999999998643

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.95  E-value=0.0044  Score=63.40  Aligned_cols=200  Identities=14%  Similarity=0.139  Sum_probs=113.0

Q ss_pred             EEEecCCCceEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        381 YTLLNARQQVTCAEISEDV-SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg-~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      ..+.+-.+.+..++|+++. +++|+....+.|...++++.-++.                              ..+.+ 
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~------------------------------i~l~g-   63 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRR------------------------------IPLDG-   63 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEE------------------------------EE-SS-
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEE------------------------------EeCCC-
Confidence            3455566779999999975 567777777877777664322111                              11222 


Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------EEEEEe-----cCCCCEEEEEEcCCCCEEEEEECCCeEEE
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR------CLVVYK-----GHGHPVWDIKFSPHGYYFASAGHDRMARL  528 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~------~~~~~~-----~h~~~V~~v~~sp~g~~l~sgs~Dg~i~l  528 (711)
                      .+-.-+|++..++.++++.-.++.+.++++....      ....+.     .++..+-.++|.+.++.|+++-...-..+
T Consensus        64 ~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l  143 (248)
T PF06977_consen   64 FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRL  143 (248)
T ss_dssp             -SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEE
T ss_pred             CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhh
Confidence            3456788888888777776678999999883211      112222     24567899999998887777777777777


Q ss_pred             EECCC---CceeEEe--------ecCCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEeeCCC---------C
Q psy14440        529 WATDS---YHPLRLF--------VGHYSDVDCVQFHPNS-NYVATGSSDRTIRLWDCVTGSHVRLLTGHK---------A  587 (711)
Q Consensus       529 wd~~~---~~~~~~~--------~~h~~~V~~v~~sp~~-~~latgs~Dg~I~iwD~~~~~~v~~~~~h~---------~  587 (711)
                      |.++.   ...+...        .....++..++++|.. ++++.+..++.|..+| .+|+.+..+.-..         .
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~  222 (248)
T PF06977_consen  144 YEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIP  222 (248)
T ss_dssp             EEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---
T ss_pred             EEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccC
Confidence            76654   2222111        1245678899999964 5556666678899999 6787766554222         2


Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEE
Q psy14440        588 PVYALSFSVCGRFLASAGGDGNVHMW  613 (711)
Q Consensus       588 ~I~~la~spdg~~Lasgs~Dg~I~iw  613 (711)
                      .--.|+|.++|++.++ ++-+..++|
T Consensus       223 QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  223 QPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             CccEEEECCCCCEEEE-cCCceEEEe
Confidence            4678999999965554 455555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.95  E-value=0.00065  Score=75.12  Aligned_cols=163  Identities=20%  Similarity=0.161  Sum_probs=100.6

Q ss_pred             cEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEE-eCCCe--EEEEECCCCeEEEEEecCCCCEEEEEEcCCCCE
Q psy14440        440 ILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSC-SQDNT--IRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYY  516 (711)
Q Consensus       440 ~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~-s~Dg~--V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~  516 (711)
                      ..+.+++..++...+.+. -.+.-..-+|+|||+.|+-+ ..||.  |.++|+.+..... +..-.+.-+.=.|+|+|++
T Consensus       218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~  295 (425)
T COG0823         218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSK  295 (425)
T ss_pred             ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCE
Confidence            345555655554433332 23334567899999987655 44665  6666777666333 3322333336689999998


Q ss_pred             EEEEEC-CC--eEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcC-Cc--EEEEECCCCcEEEEeeCCCCCeE
Q psy14440        517 FASAGH-DR--MARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD-RT--IRLWDCVTGSHVRLLTGHKAPVY  590 (711)
Q Consensus       517 l~sgs~-Dg--~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D-g~--I~iwD~~~~~~v~~~~~h~~~I~  590 (711)
                      ++..+. .|  .|.+++.+.....+. ......-.+-.|+|+|++|+..+.. |.  |.+.|+.++..++.+. +.....
T Consensus       296 ivf~Sdr~G~p~I~~~~~~g~~~~ri-T~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e  373 (425)
T COG0823         296 IVFTSDRGGRPQIYLYDLEGSQVTRL-TFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNE  373 (425)
T ss_pred             EEEEeCCCCCcceEEECCCCCceeEe-eccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCC
Confidence            887764 34  356667776655333 3333333388899999999887743 44  7777777776555554 334445


Q ss_pred             EEEEecCCCEEEEEeC
Q psy14440        591 ALSFSVCGRFLASAGG  606 (711)
Q Consensus       591 ~la~spdg~~Lasgs~  606 (711)
                      .-+|.++|+.+...+.
T Consensus       374 ~ps~~~ng~~i~~~s~  389 (425)
T COG0823         374 SPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CCCcCCCCceEEEecc
Confidence            5678888887775543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.95  E-value=0.0021  Score=70.43  Aligned_cols=201  Identities=12%  Similarity=0.156  Sum_probs=120.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------------------------------eEEEEE
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW-------------------------------------------RCLVVY  498 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~-------------------------------------------~~~~~~  498 (711)
                      .|+.++|+++..-|++|...|.|.||.+...                                           .....+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            4788999999889999999999988865211                                           112233


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEe--ec------CCCCeeEEEEcC-----CC---CEEEEE
Q psy14440        499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF--VG------HYSDVDCVQFHP-----NS---NYVATG  562 (711)
Q Consensus       499 ~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~--~~------h~~~V~~v~~sp-----~~---~~latg  562 (711)
                      ....++|++++.|.-| +++.|..+|.+.|.|++....+..-  ..      ....|+++.|.-     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            4457889999998666 9999999999999999876555431  11      234588888863     22   468899


Q ss_pred             EcCCcEEEEECC--C-CcE----EEEeeCCCCCeEEEE-EecCC---------------------CEEEEEeCCCcEEEE
Q psy14440        563 SSDRTIRLWDCV--T-GSH----VRLLTGHKAPVYALS-FSVCG---------------------RFLASAGGDGNVHMW  613 (711)
Q Consensus       563 s~Dg~I~iwD~~--~-~~~----v~~~~~h~~~I~~la-~spdg---------------------~~Lasgs~Dg~I~iw  613 (711)
                      +..|.+.+|.+.  . +..    ......+.+.|..|. |+.+.                     .++++ ..+..|+|+
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~  240 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDIRVF  240 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceEEE
Confidence            999999999875  1 211    112224667776665 32221                     13444 445689999


Q ss_pred             ECCCCeEEEEeeCCCCCEEEEEEe-----CCCCEEEEEeCCCcEEEEeCCCCCCcc
Q psy14440        614 DLSNGHLLTLLTGHTDVVRALCFS-----RDGNILASSGQDCSVKLWDFAKLSDEV  664 (711)
Q Consensus       614 Dl~sg~~i~~l~~h~~~V~sl~fs-----pdg~~Lasgs~Dg~V~iWdl~~~~~~~  664 (711)
                      ...+.+.........-....+++-     ..+..|++-..+|.|+++.+..+.+..
T Consensus       241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~  296 (395)
T PF08596_consen  241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIK  296 (395)
T ss_dssp             -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEE
T ss_pred             eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhh
Confidence            998887765544332233444552     356788889999999999999877643

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1008|consensus

Probab=97.91  E-value=5.8e-06  Score=90.70  Aligned_cols=199  Identities=18%  Similarity=0.295  Sum_probs=133.2

Q ss_pred             CCEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeE--EEEEecCCCCEEEEEEcCC-CCEEEEEE----CCCeEEEEEC
Q psy14440        461 GPVRKLSFSPDR--SLLLSCSQDNTIRLWSLLLWRC--LVVYKGHGHPVWDIKFSPH-GYYFASAG----HDRMARLWAT  531 (711)
Q Consensus       461 ~~V~~l~fspdg--~~L~s~s~Dg~V~iwdl~t~~~--~~~~~~h~~~V~~v~~sp~-g~~l~sgs----~Dg~i~lwd~  531 (711)
                      ..+.|++++-+.  ..++.|..+|.|-+-.++...-  .....+|....++++|++- .+.+|.|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            346677765543  4788899999999988754322  2344567889999999984 45666653    3567999999


Q ss_pred             CCC--cee--EEee-cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-EEEEeeCCCCCeEEEEEec-CCCEEEEE
Q psy14440        532 DSY--HPL--RLFV-GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS-HVRLLTGHKAPVYALSFSV-CGRFLASA  604 (711)
Q Consensus       532 ~~~--~~~--~~~~-~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~-~v~~~~~h~~~I~~la~sp-dg~~Lasg  604 (711)
                      .++  .+.  ..|. +......+++|-.+.+.+.+|...+.+.++|++... ....+  .+..+..+.++| .+.|+++-
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence            876  222  1222 245567789999889999999999999999998432 12222  233456677788 78888776


Q ss_pred             eCCCcEEEEE-CCCCe-EEEEeeCCC----CCEEEEEEeCCCC-EEEEEe-CCCcEEEEeCCCCCC
Q psy14440        605 GGDGNVHMWD-LSNGH-LLTLLTGHT----DVVRALCFSRDGN-ILASSG-QDCSVKLWDFAKLSD  662 (711)
Q Consensus       605 s~Dg~I~iwD-l~sg~-~i~~l~~h~----~~V~sl~fspdg~-~Lasgs-~Dg~V~iWdl~~~~~  662 (711)
                      . ||.|.+|| .++-+ .+..+....    ..+..++|+|..+ .|++.. ..++|+++|+.....
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t  279 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGT  279 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCC
Confidence            5 89999999 33322 222222112    2488999999533 455555 457899999976443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.91  E-value=0.012  Score=61.97  Aligned_cols=233  Identities=11%  Similarity=0.100  Sum_probs=132.9

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEeCCCCceeeec---------cCccccccccccCCcEEEEEe------
Q psy14440        392 CAEISEDVSILAVGF----------SESYIKLWSLVPQKLKAMK---------SSDQLQDIEMECDDILVRIMD------  446 (711)
Q Consensus       392 ~l~fs~dg~~LatG~----------~dg~I~vWdl~~~~~~~~~---------~~~~~~~l~~~~~d~~i~i~d------  446 (711)
                      .+..|+|++.+.+..          ..-.|.+||..+-....-.         .......+....++..+.+++      
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            456899999888643          3457999999876543211         111222334445555555554      


Q ss_pred             -----cCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEEe----cCCCCEE-EEEEcCCCC
Q psy14440        447 -----ERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL-LWRCLVVYK----GHGHPVW-DIKFSPHGY  515 (711)
Q Consensus       447 -----~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~-t~~~~~~~~----~h~~~V~-~v~~sp~g~  515 (711)
                           ...++.+..+.. .+ +..+--+. ++.+.+-+.||++.-..+. .|+......    ....++. .-++...+.
T Consensus       120 VtVVDl~~~kvv~ei~~-PG-C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~  196 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDT-PG-CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG  196 (342)
T ss_dssp             EEEEETTTTEEEEEEEG-TS-EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred             EEEEECCCCceeeeecC-CC-EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence                 444544444331 11 11121122 2457788889999988886 454432211    1122222 234445555


Q ss_pred             EEEEEECCCeEEEEECCCCcee--EEeec----------CCCCeeEEEEcCCCCEEEEEEc---CC-------cEEEEEC
Q psy14440        516 YFASAGHDRMARLWATDSYHPL--RLFVG----------HYSDVDCVQFHPNSNYVATGSS---DR-------TIRLWDC  573 (711)
Q Consensus       516 ~l~sgs~Dg~i~lwd~~~~~~~--~~~~~----------h~~~V~~v~~sp~~~~latgs~---Dg-------~I~iwD~  573 (711)
                      .++..+.+|.|+-.|+......  ..+..          ..+.-.-+++|+..+.|++--.   ++       .|.+||+
T Consensus       197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~  276 (342)
T PF06433_consen  197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL  276 (342)
T ss_dssp             EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred             eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence            6666888999998888765422  11110          1123446788876666555322   22       4888999


Q ss_pred             CCCcEEEEeeCCCCCeEEEEEecCCC-EEEEE-eCCCcEEEEECCCCeEEEEeeCCC
Q psy14440        574 VTGSHVRLLTGHKAPVYALSFSVCGR-FLASA-GGDGNVHMWDLSNGHLLTLLTGHT  628 (711)
Q Consensus       574 ~~~~~v~~~~~h~~~I~~la~spdg~-~Lasg-s~Dg~I~iwDl~sg~~i~~l~~h~  628 (711)
                      .+++.++.+.. ...+.+|+++.+.+ +|++. ..++.|.+||..+|+.+.++..-.
T Consensus       277 ~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG  332 (342)
T PF06433_consen  277 KTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG  332 (342)
T ss_dssp             TTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred             CCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence            99999998873 34577999998876 55444 467899999999999999887543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.90  E-value=0.0047  Score=65.33  Aligned_cols=183  Identities=15%  Similarity=0.152  Sum_probs=118.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe----c-CCCCEEEEEEcCCCCEEEEEEC---------CCeEEE
Q psy14440        463 VRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK----G-HGHPVWDIKFSPHGYYFASAGH---------DRMARL  528 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~----~-h~~~V~~v~~sp~g~~l~sgs~---------Dg~i~l  528 (711)
                      +.++..-..+..|+++.. | +.+++.+++..+..+.    + .....+++...++|.+.++...         -..-++
T Consensus        68 ~~~~~~~d~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l  145 (307)
T COG3386          68 FSSGALIDAGGRLIACEH-G-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL  145 (307)
T ss_pred             cccceeecCCCeEEEEcc-c-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence            344444445555665543 3 6777776555532221    1 1244567888899876665444         112244


Q ss_pred             EECC-CCceeEEeecCCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCC--C----cE-EEEeeCCCCCeEEEEEecCCC
Q psy14440        529 WATD-SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS-DRTIRLWDCVT--G----SH-VRLLTGHKAPVYALSFSVCGR  599 (711)
Q Consensus       529 wd~~-~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~-Dg~I~iwD~~~--~----~~-v~~~~~h~~~I~~la~spdg~  599 (711)
                      |-++ .+..++.+.++...-+.|+||||++.++.+.+ .+.|.-|++..  +    +. ...+....+..-.++...+|.
T Consensus       146 yr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~  225 (307)
T COG3386         146 YRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN  225 (307)
T ss_pred             EEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC
Confidence            5444 56777777777777889999999988777665 47788887652  1    11 222233456777888899998


Q ss_pred             EEEEEeCCC-cEEEEECCCCeEEEEeeCCCCCEEEEEEeC-CCCEEEEEeC
Q psy14440        600 FLASAGGDG-NVHMWDLSNGHLLTLLTGHTDVVRALCFSR-DGNILASSGQ  648 (711)
Q Consensus       600 ~Lasgs~Dg-~I~iwDl~sg~~i~~l~~h~~~V~sl~fsp-dg~~Lasgs~  648 (711)
                      +.+++..+| .|.+|+.. |+.+..+.-....+++++|-- +.+.|+..+.
T Consensus       226 lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         226 LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            886655554 99999987 999999988877888999954 4455554443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.89  E-value=0.00095  Score=74.10  Aligned_cols=182  Identities=16%  Similarity=0.242  Sum_probs=102.5

Q ss_pred             EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       455 ~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      .+....-....++++|+|++++++ .||.-.|+....++....-.     -.+++|...+ .+|+-...++|.++.--..
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~G~-----g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAFGS-----GLSFVWSSRN-RYAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEEEE------SEEEE-TSS-EEEEE-TTS-EEEEETTEE
T ss_pred             cCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccccCc-----eeEEEEecCc-cEEEEECCCeEEEEEcCcc
Confidence            333444557899999999999885 56778888866666544322     3457888844 5777777899999733222


Q ss_pred             ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q psy14440        535 HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD  614 (711)
Q Consensus       535 ~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwD  614 (711)
                      ...+.+... ..+..|-.   |..|+..+ ++.|.+||+.+++.++.+...  .|..+.|+++|.+++..+.+ .+.|++
T Consensus       100 ~~~k~i~~~-~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  100 EVVKSIKLP-FSVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             -TT-----S-S-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             ccceEEcCC-cccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            222233221 12344432   77777776 448999999999999998743  38999999999999999765 688877


Q ss_pred             CCCC-----------eEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEE
Q psy14440        615 LSNG-----------HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKL  654 (711)
Q Consensus       615 l~sg-----------~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~i  654 (711)
                      ....           ..+..+..-...|.+.+|..| -++.| +.. .|+-
T Consensus       172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYt-T~~-~lkY  219 (443)
T PF04053_consen  172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYT-TSN-HLKY  219 (443)
T ss_dssp             E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE--TT-EEEE
T ss_pred             ecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEE-cCC-eEEE
Confidence            5433           023333322457888889865 33443 333 5555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.88  E-value=0.0012  Score=74.59  Aligned_cols=170  Identities=12%  Similarity=0.091  Sum_probs=110.0

Q ss_pred             CcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCC----eEEEEECCCCeEEEEEecCCCCEEEEEEcCCC
Q psy14440        439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDN----TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG  514 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg----~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g  514 (711)
                      .+.+.++|..+.+...++.-- +....++++++|+++++++.+.    ++..-+......+..+....  +  -++.++|
T Consensus       214 ~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdG  288 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAG  288 (635)
T ss_pred             eEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCC
Confidence            455667777776666655432 2446788999999998886432    23333332222222221100  0  1234577


Q ss_pred             CEEEEEECCCeEEEEECCC----C-ceeEEeecCCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCCCcE----------
Q psy14440        515 YYFASAGHDRMARLWATDS----Y-HPLRLFVGHYSDVDCVQFHPNSNYVATGSS-DRTIRLWDCVTGSH----------  578 (711)
Q Consensus       515 ~~l~sgs~Dg~i~lwd~~~----~-~~~~~~~~h~~~V~~v~~sp~~~~latgs~-Dg~I~iwD~~~~~~----------  578 (711)
                      ++...+  +++|.++|..+    + ..+..+ .-......|.++|||+++++++. +.+|.|+|+.+.+.          
T Consensus       289 K~~~V~--gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~  365 (635)
T PRK02888        289 KFKTIG--GSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD  365 (635)
T ss_pred             CEEEEC--CCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence            766653  67899999998    3 334333 34566789999999999877664 89999999987552          


Q ss_pred             --EEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy14440        579 --VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       579 --v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s  617 (711)
                        +....--.+ -...+|+.+|+...|-.-|..|..||+.+
T Consensus       366 ~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        366 AVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             eEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence              333332223 34568999998888888999999999876

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.86  E-value=0.018  Score=60.76  Aligned_cols=221  Identities=13%  Similarity=0.078  Sum_probs=135.7

Q ss_pred             CCcEEEEEecCCCeeEEEeeccc---C----CEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEEecCCCCEEEE
Q psy14440        438 DDILVRIMDERNAETTRTLVGHE---G----PVRKLSFSPDRSLLLSCSQ--DNTIRLWSLLLWRCLVVYKGHGHPVWDI  508 (711)
Q Consensus       438 ~d~~i~i~d~~~~~~~~~l~~h~---~----~V~~l~fspdg~~L~s~s~--Dg~V~iwdl~t~~~~~~~~~h~~~V~~v  508 (711)
                      ..-.|.+||..+......+.--.   .    ....++++.||+++++...  -..|.|.|+...+.+..+...  .++.+
T Consensus        65 RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~i  142 (342)
T PF06433_consen   65 RTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLI  142 (342)
T ss_dssp             EEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEE
T ss_pred             ceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEE
Confidence            34568899999887766543221   1    1234678899998888754  456999999999988877632  23333


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECC-CCceeEEee----cCCCC-eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE--E
Q psy14440        509 KFSPHGYYFASAGHDRMARLWATD-SYHPLRLFV----GHYSD-VDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV--R  580 (711)
Q Consensus       509 ~~sp~g~~l~sgs~Dg~i~lwd~~-~~~~~~~~~----~h~~~-V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v--~  580 (711)
                      --+. ..-|.+-|.||.+.-..++ .|+..+...    ..... +..-++...+..++.-+.+|.|+-.|+......  .
T Consensus       143 yP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~  221 (342)
T PF06433_consen  143 YPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK  221 (342)
T ss_dssp             EEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE
T ss_pred             EecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC
Confidence            2222 2468888899999999887 455443221    11111 223334444555555777899988887655422  1


Q ss_pred             EeeC----------CCCCeEEEEEecCCCEEEEEe---CCC-------cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCC
Q psy14440        581 LLTG----------HKAPVYALSFSVCGRFLASAG---GDG-------NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDG  640 (711)
Q Consensus       581 ~~~~----------h~~~I~~la~spdg~~Lasgs---~Dg-------~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg  640 (711)
                      .+..          ..+.-.-+++++..+.|++--   .+|       .|.+||+.+++.+.++.. ...+.+|+.+.+.
T Consensus       222 ~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~  300 (342)
T PF06433_consen  222 PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDD  300 (342)
T ss_dssp             EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSS
T ss_pred             cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCC
Confidence            1110          112334567776555555432   122       488889999999999874 2357799999987


Q ss_pred             C-EEEEE-eCCCcEEEEeCCCCCC
Q psy14440        641 N-ILASS-GQDCSVKLWDFAKLSD  662 (711)
Q Consensus       641 ~-~Lasg-s~Dg~V~iWdl~~~~~  662 (711)
                      + +|++. ..++.|.|||..+.+.
T Consensus       301 ~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  301 KPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             S-EEEEEETTTTEEEEEETTT--E
T ss_pred             CcEEEEEcCCCCeEEEEeCcCCcE
Confidence            7 66554 4589999999987543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.84  E-value=0.03  Score=60.21  Aligned_cols=261  Identities=16%  Similarity=0.149  Sum_probs=125.6

Q ss_pred             EECCCCCEEEEEe-CCC--eEEEEeCCCCceeeeccCcccc---cccc--------ccCCcEEEEEecCCCeeEEEeecc
Q psy14440        394 EISEDVSILAVGF-SES--YIKLWSLVPQKLKAMKSSDQLQ---DIEM--------ECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       394 ~fs~dg~~LatG~-~dg--~I~vWdl~~~~~~~~~~~~~~~---~l~~--------~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      +|..||+.|+.++ .||  .+.+-|+.++++..+...+...   .+..        ......+...|+.+.+....+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            5788996665544 455  4556677887777665533211   1111        112234455566777766666666


Q ss_pred             cCCEEEEEEc--CCCCEEEEEeC----------------------CCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCC
Q psy14440        460 EGPVRKLSFS--PDRSLLLSCSQ----------------------DNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGY  515 (711)
Q Consensus       460 ~~~V~~l~fs--pdg~~L~s~s~----------------------Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~  515 (711)
                      .+.+-...|.  .|+..++-+-.                      .+.|.-.|+.+++....+. ....+.-+.|+|...
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP  200 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence            6666556663  35555443211                      1345666788887766665 466778899999554


Q ss_pred             -EEEEEE---CCC-eEEEEECCC-CceeEEeecCC--CCeeEEEEcCCCCEEEEEEc-----CCcEEEEECCCCcEEEEe
Q psy14440        516 -YFASAG---HDR-MARLWATDS-YHPLRLFVGHY--SDVDCVQFHPNSNYVATGSS-----DRTIRLWDCVTGSHVRLL  582 (711)
Q Consensus       516 -~l~sgs---~Dg-~i~lwd~~~-~~~~~~~~~h~--~~V~~v~~sp~~~~latgs~-----Dg~I~iwD~~~~~~v~~~  582 (711)
                       .|+.|-   .+. ..|||-+++ +...+.+..+.  ..+..=-|.++|..|..-+.     +..|.-+|..+++.....
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~  280 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM  280 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred             CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence             444443   233 247775543 22233333232  22333457889988766432     446778888888654433


Q ss_pred             eCCCCCeEEEEEecCCCEEEEEeCCC----------------cEEEEECCCCeEEEEee---------CCCC-CEEEEEE
Q psy14440        583 TGHKAPVYALSFSVCGRFLASAGGDG----------------NVHMWDLSNGHLLTLLT---------GHTD-VVRALCF  636 (711)
Q Consensus       583 ~~h~~~I~~la~spdg~~Lasgs~Dg----------------~I~iwDl~sg~~i~~l~---------~h~~-~V~sl~f  636 (711)
                      ..  ....-+-.++||++++-=+.|.                -|+++++..++......         ++.. .=-...|
T Consensus       281 ~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~F  358 (386)
T PF14583_consen  281 EM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSF  358 (386)
T ss_dssp             EE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE
T ss_pred             eC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCcc
Confidence            22  2344566678998876433331                46678888776532221         1111 1246799


Q ss_pred             eCCCCEEE-EEeCCCcEEEEeC
Q psy14440        637 SRDGNILA-SSGQDCSVKLWDF  657 (711)
Q Consensus       637 spdg~~La-sgs~Dg~V~iWdl  657 (711)
                      +|||++++ ++...|...||=+
T Consensus       359 SPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  359 SPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             -TTSSEEEEEE-TTSS-EEEEE
T ss_pred             CCCCCEEEEECCCCCCccEEEE
Confidence            99999655 4556787777654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.79  E-value=0.0007  Score=79.08  Aligned_cols=143  Identities=17%  Similarity=0.188  Sum_probs=99.7

Q ss_pred             CCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCC-EEEEEEcC-----CCCEEEEEECCCeEEEEECCCCc--eeEEe-
Q psy14440        471 DRSLLLSC-SQDNTIRLWSLLLWRCLVVYKGHGHP-VWDIKFSP-----HGYYFASAGHDRMARLWATDSYH--PLRLF-  540 (711)
Q Consensus       471 dg~~L~s~-s~Dg~V~iwdl~t~~~~~~~~~h~~~-V~~v~~sp-----~g~~l~sgs~Dg~i~lwd~~~~~--~~~~~-  540 (711)
                      +.++|+.. .....|+-.|+.+|+.+..++.|... |.+++-..     +....+.|-.+..+..||.+-..  .+..- 
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            44444443 34577999999999999999987654 65554321     13345667778889999998532  22110 


Q ss_pred             --ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q psy14440        541 --VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       541 --~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl  615 (711)
                        -.......|++-+.+| +||+|+.+|.||+||-...+....+.+-..+|..|..+.||+||++.+. ..|.+++.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence              0234567888877665 8999999999999994333333345567899999999999999887765 46777774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.78  E-value=0.0081  Score=64.35  Aligned_cols=179  Identities=15%  Similarity=0.152  Sum_probs=107.6

Q ss_pred             CCEEEEEeC----------CCeEEEEECCCC-----eEEEEE-ecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q psy14440        472 RSLLLSCSQ----------DNTIRLWSLLLW-----RCLVVY-KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH  535 (711)
Q Consensus       472 g~~L~s~s~----------Dg~V~iwdl~t~-----~~~~~~-~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~  535 (711)
                      ..+|++|+.          .|.|.++++...     +..... ....++|++++-- .| +++++. .+.+.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence            457777653          288999999873     222111 2347889988766 34 444444 5899999998877


Q ss_pred             eeEEeecCC--CCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-CcEEEEee--CCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy14440        536 PLRLFVGHY--SDVDCVQFHPNSNYVATGSSDRTIRLWDCVT-GSHVRLLT--GHKAPVYALSFSVCGRFLASAGGDGNV  610 (711)
Q Consensus       536 ~~~~~~~h~--~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~-~~~v~~~~--~h~~~I~~la~spdg~~Lasgs~Dg~I  610 (711)
                      .+.....+.  ..+.++...  ++++++|...+.|.++..+. +..+..+.  .....++++.|-.+++.+++++.+|.|
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl  196 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL  196 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred             cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence            232222222  345555554  67999999888888774443 33233332  234568888888677899999999999


Q ss_pred             EEEECCC-------C--eEEEEeeCC-CCCEEEE---EEeC--CCC------EEEEEeCCCcEEEE
Q psy14440        611 HMWDLSN-------G--HLLTLLTGH-TDVVRAL---CFSR--DGN------ILASSGQDCSVKLW  655 (711)
Q Consensus       611 ~iwDl~s-------g--~~i~~l~~h-~~~V~sl---~fsp--dg~------~Lasgs~Dg~V~iW  655 (711)
                      .++....       +  ++......| ...|+++   ++.+  .+.      .++.++.+|.|.+.
T Consensus       197 ~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  197 FVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            9997652       2  333333333 3567777   4444  122      47888899998843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=0.016  Score=63.59  Aligned_cols=197  Identities=16%  Similarity=0.131  Sum_probs=139.8

Q ss_pred             EEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEEC---CCeEEEEECCCCceeE
Q psy14440        463 VRKLSFSPDRSLLLSCS-QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH---DRMARLWATDSYHPLR  538 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s-~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~---Dg~i~lwd~~~~~~~~  538 (711)
                      -.+++.++++..++... .++.|.+.|..+.+.......-. .-..++++++++.+.++..   ++++.+.|..+.+.+.
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            45678888888555544 45889999988777776654322 5567999999977766655   6889999999888777


Q ss_pred             EeecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEE-E---eeCCCCCeEEEEEecCCCEEEEEeCC---CcE
Q psy14440        539 LFVGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSHVR-L---LTGHKAPVYALSFSVCGRFLASAGGD---GNV  610 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~v~-~---~~~h~~~I~~la~spdg~~Lasgs~D---g~I  610 (711)
                      ....-..+ ..+++.|+|+.+++.. .++.|.+.|.......+ .   ...-...-..++++++|.++.+....   +.+
T Consensus       155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v  233 (381)
T COG3391         155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV  233 (381)
T ss_pred             EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence            74433334 8999999999766655 78999999977665553 1   01112334678899999977766544   599


Q ss_pred             EEEECCCCeEEEE-eeCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCC
Q psy14440        611 HMWDLSNGHLLTL-LTGHTDVVRALCFSRDGNILASSGQ-DCSVKLWDFAKLS  661 (711)
Q Consensus       611 ~iwDl~sg~~i~~-l~~h~~~V~sl~fspdg~~Lasgs~-Dg~V~iWdl~~~~  661 (711)
                      .+.|..++..... ...-......+..+|+|+++.+... .+.|.+-|.....
T Consensus       234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         234 LKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             EEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence            9999998887765 2211114567899999998888744 4788888876633

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=0.032  Score=61.30  Aligned_cols=176  Identities=15%  Similarity=0.171  Sum_probs=127.6

Q ss_pred             CEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcee
Q psy14440        462 PVRKLSFSPDRSLLLSCSQ---DNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG-HDRMARLWATDSYHPL  537 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~---Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs-~Dg~i~lwd~~~~~~~  537 (711)
                      .-..++++++++.++.+..   ++++.+.|-.+.+.+.....-..+ ..++++|+|..++.+. .++.+.+.|.......
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence            4578999999988877765   688999999988888876544445 8899999999666555 7899999998766554


Q ss_pred             E-E---eecCCCCeeEEEEcCCCCEEEEEEcC---CcEEEEECCCCcEEEE-ee-CCCCCeEEEEEecCCCEEEEEeC-C
Q psy14440        538 R-L---FVGHYSDVDCVQFHPNSNYVATGSSD---RTIRLWDCVTGSHVRL-LT-GHKAPVYALSFSVCGRFLASAGG-D  607 (711)
Q Consensus       538 ~-~---~~~h~~~V~~v~~sp~~~~latgs~D---g~I~iwD~~~~~~v~~-~~-~h~~~I~~la~spdg~~Lasgs~-D  607 (711)
                      + .   ...-...-..+.+.++++++.+....   +.+...|..++..... .. +.. ....+.++|+|+++.+... .
T Consensus       196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~  274 (381)
T COG3391         196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQG  274 (381)
T ss_pred             ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCC
Confidence            3 0   11222334678899999976655443   5899999998877665 22 222 4567889999999988854 4


Q ss_pred             CcEEEEECCCCeEEEEeeCCC---CCEEEEEEeCC
Q psy14440        608 GNVHMWDLSNGHLLTLLTGHT---DVVRALCFSRD  639 (711)
Q Consensus       608 g~I~iwDl~sg~~i~~l~~h~---~~V~sl~fspd  639 (711)
                      +.+.+.|..+......+....   ..+..+++.+.
T Consensus       275 ~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         275 GTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             CeEEEEeCCCCceeeeecccccccccceeccceee
Confidence            899999999888877765433   34566666654

>KOG3621|consensus

Probab=97.65  E-value=0.00035  Score=78.03  Aligned_cols=157  Identities=12%  Similarity=0.117  Sum_probs=108.3

Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK-GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~-~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      |...|.--+++..+++++.|+.-|.|++|+-..+.....-. +..+.+..+..+++..++|.|+..|.|.++-+....+-
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            44556666777889999999999999999987666544322 34455666778888889999999999999987764322


Q ss_pred             EE-e-----ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc----EEEEeeCCCCCeEEEEEecCCCEEEEEeCC
Q psy14440        538 RL-F-----VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS----HVRLLTGHKAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       538 ~~-~-----~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~----~v~~~~~h~~~I~~la~spdg~~Lasgs~D  607 (711)
                      .. +     ..|...|+|++|++|+..+++|...|+|..-.+.+..    .+..+..-.+.|..|... ++.+|++... 
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~-  189 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT-  189 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh-
Confidence            11 1     1377889999999999999999999999988877621    122223345667666654 3444444433 


Q ss_pred             CcEEEEECCCC
Q psy14440        608 GNVHMWDLSNG  618 (711)
Q Consensus       608 g~I~iwDl~sg  618 (711)
                       .-.+++...+
T Consensus       190 -r~~Lc~tE~e  199 (726)
T KOG3621|consen  190 -RCILCQTEAE  199 (726)
T ss_pred             -hhheeecchh
Confidence             2334554443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.61  E-value=0.0041  Score=67.58  Aligned_cols=189  Identities=22%  Similarity=0.219  Sum_probs=112.6

Q ss_pred             cCCCCEEEEE---------eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEE
Q psy14440        469 SPDRSLLLSC---------SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL  539 (711)
Q Consensus       469 spdg~~L~s~---------s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~  539 (711)
                      |||+++++..         +..+.+.|||+.+++....... ...+....|||+|+.++... ++.|.+++..++...+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            5778877763         2346799999998776654443 56788899999999999886 68899998877754443


Q ss_pred             eecC-----------------CCCeeEEEEcCCCCEEEEEEcC-Cc----------------------------------
Q psy14440        540 FVGH-----------------YSDVDCVQFHPNSNYVATGSSD-RT----------------------------------  567 (711)
Q Consensus       540 ~~~h-----------------~~~V~~v~~sp~~~~latgs~D-g~----------------------------------  567 (711)
                      -...                 .+.-..+-|+|+|++||....| ..                                  
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v  158 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV  158 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence            2211                 2234678899999998876533 22                                  


Q ss_pred             -EEEEECCCCcEEEE--e---eCCCCCeEEEEEecCCCEEEEEe--CC---CcEEEEECCCCeEEEEeeC-CCCC---EE
Q psy14440        568 -IRLWDCVTGSHVRL--L---TGHKAPVYALSFSVCGRFLASAG--GD---GNVHMWDLSNGHLLTLLTG-HTDV---VR  632 (711)
Q Consensus       568 -I~iwD~~~~~~v~~--~---~~h~~~I~~la~spdg~~Lasgs--~D---g~I~iwDl~sg~~i~~l~~-h~~~---V~  632 (711)
                       +.|+|+.+++....  .   ..-..-+..+.|+++++.|+..-  .+   ..+.++|..+++.-..+.. ..+.   -.
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence             33345544443211  1   12234578899999998444332  22   2577778877654333221 1222   23


Q ss_pred             EEEEe-CCCC-EEEEEeCCCcEEEEeCCC
Q psy14440        633 ALCFS-RDGN-ILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       633 sl~fs-pdg~-~Lasgs~Dg~V~iWdl~~  659 (711)
                      ...|. +++. +|.....||--+||-+..
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~  267 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDL  267 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEET
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcc
Confidence            45554 5544 555566788766665544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.61  E-value=0.032  Score=61.91  Aligned_cols=192  Identities=18%  Similarity=0.207  Sum_probs=113.3

Q ss_pred             EEEEEEcCCCCEEEEE-eCC----CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCC-----------eE
Q psy14440        463 VRKLSFSPDRSLLLSC-SQD----NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDR-----------MA  526 (711)
Q Consensus       463 V~~l~fspdg~~L~s~-s~D----g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg-----------~i  526 (711)
                      +...++||||++|+.+ +..    .+|+++|+.+++.+...-. ......+.|.++++.|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            3467889999988755 333    3599999999987653211 11122399999988777665333           37


Q ss_pred             EEEECCCCce--eEEeecCCCC--eeEEEEcCCCCEEEEEEcC----CcEEEEECCCC----cEEEEeeCCCCCe-EEEE
Q psy14440        527 RLWATDSYHP--LRLFVGHYSD--VDCVQFHPNSNYVATGSSD----RTIRLWDCVTG----SHVRLLTGHKAPV-YALS  593 (711)
Q Consensus       527 ~lwd~~~~~~--~~~~~~h~~~--V~~v~~sp~~~~latgs~D----g~I~iwD~~~~----~~v~~~~~h~~~I-~~la  593 (711)
                      +.|.+.+...  ..++.+....  ...+..+.++++|+..+..    ..|.+.|+..+    ...+.+..+...+ ..+.
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            8888876643  3555554443  5678889999998865533    34788888875    2334444333344 3344


Q ss_pred             EecCCCEEEEEe---CCCcEEEEECCCCe---EEEEeeCCCC--CEEEEEEeCCCCEEE-EEeCCC--cEEEEeCC
Q psy14440        594 FSVCGRFLASAG---GDGNVHMWDLSNGH---LLTLLTGHTD--VVRALCFSRDGNILA-SSGQDC--SVKLWDFA  658 (711)
Q Consensus       594 ~spdg~~Lasgs---~Dg~I~iwDl~sg~---~i~~l~~h~~--~V~sl~fspdg~~La-sgs~Dg--~V~iWdl~  658 (711)
                      .. ++.+++...   .++.|.-.++.+..   ....+..|..  .+..+..  .+++|+ +.-.++  .|++|++.
T Consensus       285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred             cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence            33 454554443   34678888888765   2335555655  3555544  344444 444454  58889988

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1645|consensus

Probab=97.60  E-value=0.00037  Score=73.03  Aligned_cols=95  Identities=15%  Similarity=0.263  Sum_probs=81.1

Q ss_pred             EEEEECCCCcEEEEeeCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCC-CEEEE
Q psy14440        568 IRLWDCVTGSHVRLLTGHKAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDG-NILAS  645 (711)
Q Consensus       568 I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~-~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg-~~Las  645 (711)
                      |++.+..+.+....+.+|...|..++|||..+ ++..++.+.+|+|.|+++...+..+..| ..+++++|.-|. ++|..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            77777766666666777888999999999877 7888999999999999999999998888 789999998865 57888


Q ss_pred             EeCCCcEEEEeCCCCCCc
Q psy14440        646 SGQDCSVKLWDFAKLSDE  663 (711)
Q Consensus       646 gs~Dg~V~iWdl~~~~~~  663 (711)
                      |-..|.|.|||++.....
T Consensus       254 Gl~nG~VlvyD~R~~~~~  271 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEGP  271 (463)
T ss_pred             eccCceEEEEEccCCCch
Confidence            888999999999976543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.58  E-value=0.006  Score=65.34  Aligned_cols=173  Identities=12%  Similarity=0.130  Sum_probs=110.6

Q ss_pred             CeEEEEECCCCeEEEEEecC-CCCEEEEE---EcCC----CCEEEEEEC----------CCeEEEEECCCC----ceeEE
Q psy14440        482 NTIRLWSLLLWRCLVVYKGH-GHPVWDIK---FSPH----GYYFASAGH----------DRMARLWATDSY----HPLRL  539 (711)
Q Consensus       482 g~V~iwdl~t~~~~~~~~~h-~~~V~~v~---~sp~----g~~l~sgs~----------Dg~i~lwd~~~~----~~~~~  539 (711)
                      +.|++.|-.+++.+..+.-. ...+++++   +..+    ..+|++|+.          .|.+.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35888888888877666432 33444443   3332    467887763          288999999874    23332


Q ss_pred             e--ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-EEEEee-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q psy14440        540 F--VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS-HVRLLT-GHKAPVYALSFSVCGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       540 ~--~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~-~v~~~~-~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl  615 (711)
                      +  ....+.|++++-- ++ +|+++. ++.|.+|++...+ ....-. .....+.++...  +++|++|+....|.++..
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence            2  2356788888876 34 455555 6889999998887 443322 233356666554  679999998888888754


Q ss_pred             CC-CeEEEEee--CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        616 SN-GHLLTLLT--GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       616 ~s-g~~i~~l~--~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      .. +..+..+.  .....++++.|-.+++.++.+..+|.|.++....
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            33 33233332  2345688889986667999999999999999864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.57  E-value=0.026  Score=62.59  Aligned_cols=167  Identities=10%  Similarity=0.047  Sum_probs=89.9

Q ss_pred             eEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc------eeEEeecCCCCeeEEEEcCCC
Q psy14440        483 TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH------PLRLFVGHYSDVDCVQFHPNS  556 (711)
Q Consensus       483 ~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~------~~~~~~~h~~~V~~v~~sp~~  556 (711)
                      .|+||+.. |+.+..+.-..+.|.++.|+.+. .+++...||++++||.....      .+....-....+.++.+..+|
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence            48888875 55566555445899999998754 66677789999999986433      011111111222222333355


Q ss_pred             CEEEEEEcCCcEEEEECCCCc-EEEEee---C-----CC-CCeEE-EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee
Q psy14440        557 NYVATGSSDRTIRLWDCVTGS-HVRLLT---G-----HK-APVYA-LSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLT  625 (711)
Q Consensus       557 ~~latgs~Dg~I~iwD~~~~~-~v~~~~---~-----h~-~~I~~-la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~  625 (711)
                      -.+.  ..++.+.+.+-.... ..+.+.   +     |. ..... ..++.++...+....++.+.+.+-...+.   +.
T Consensus       140 ivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~  214 (410)
T PF04841_consen  140 IVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID  214 (410)
T ss_pred             EEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence            3333  334555444322211 111111   0     00 00000 22334444444444444555333222111   11


Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        626 GHTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       626 ~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                       ..+.+..++.||+|++||.-..+|.+.|.+.
T Consensus       215 -~~~~i~~iavSpng~~iAl~t~~g~l~v~ss  245 (410)
T PF04841_consen  215 -SDGPIIKIAVSPNGKFIALFTDSGNLWVVSS  245 (410)
T ss_pred             -CCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence             2367999999999999999999999988864

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.55  E-value=0.038  Score=57.51  Aligned_cols=218  Identities=15%  Similarity=0.133  Sum_probs=121.7

Q ss_pred             CCCCEEEEEeCCCeEEEEeC-CCCceee---------eccCccccccccccCCcEEEEEecCCCeeEEE-----------
Q psy14440        397 EDVSILAVGFSESYIKLWSL-VPQKLKA---------MKSSDQLQDIEMECDDILVRIMDERNAETTRT-----------  455 (711)
Q Consensus       397 ~dg~~LatG~~dg~I~vWdl-~~~~~~~---------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----------  455 (711)
                      ..++.|+.|+++| |.++++ .......         +..-++.+.+.+- .|+.+++++.........           
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEE-cCCccEEEEchhhcccccccccccccccc
Confidence            4567888888888 888887 2222221         2222222222222 247777777554333221           


Q ss_pred             ---eecccCCEEEEE--EcCCCCEEEEEeCCCeEEEEECCCC-----eEEEEEecCCCCEEEEEEcCCCCEEEEEECCCe
Q psy14440        456 ---LVGHEGPVRKLS--FSPDRSLLLSCSQDNTIRLWSLLLW-----RCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRM  525 (711)
Q Consensus       456 ---l~~h~~~V~~l~--fspdg~~L~s~s~Dg~V~iwdl~t~-----~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~  525 (711)
                         .......+...+  -...+...+.+....+|.+|.+...     .....+. -...+.+++|.  ++.++.|..+ .
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~  158 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-G  158 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-c
Confidence               112223344444  1123334444445558998887542     3444444 35778899998  5678877754 4


Q ss_pred             EEEEECCCCceeEEeecCC------------CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE--EeeCCCCCeEE
Q psy14440        526 ARLWATDSYHPLRLFVGHY------------SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR--LLTGHKAPVYA  591 (711)
Q Consensus       526 i~lwd~~~~~~~~~~~~h~------------~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~--~~~~h~~~I~~  591 (711)
                      ..+.|+.++.....+....            ..+..+... ++.+|++.  |..-.+.| ..|+..+  .+... ....+
T Consensus       159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~W~-~~p~~  233 (275)
T PF00780_consen  159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVN-KNGEPSRKSTIQWS-SAPQS  233 (275)
T ss_pred             eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEc-CCCCcCcccEEEcC-CchhE
Confidence            7888998776655442211            223333333 45566543  33333444 3554444  33332 34556


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCC
Q psy14440        592 LSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHT  628 (711)
Q Consensus       592 la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~  628 (711)
                      +++.  ..||++.+.+ .|.||++.+|++++.+....
T Consensus       234 ~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~~  267 (275)
T PF00780_consen  234 VAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLPN  267 (275)
T ss_pred             EEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECCC
Confidence            6664  5588777664 59999999999999887543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.51  E-value=0.1  Score=59.80  Aligned_cols=230  Identities=8%  Similarity=0.071  Sum_probs=134.6

Q ss_pred             ccccccCCcEEEEEecCCCeeEEEeec--ccC--CEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCeEEEEEecC
Q psy14440        432 DIEMECDDILVRIMDERNAETTRTLVG--HEG--PVRKLSFSPDRSLLLSCS------QDNTIRLWSLLLWRCLVVYKGH  501 (711)
Q Consensus       432 ~l~~~~~d~~i~i~d~~~~~~~~~l~~--h~~--~V~~l~fspdg~~L~s~s------~Dg~V~iwdl~t~~~~~~~~~h  501 (711)
                      .+.+++.++.+..+|..+++.+.....  +..  .+++--.--++ .+++++      .+|.|..+|..+++.+-.+..-
T Consensus       122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~  200 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV  200 (527)
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence            355666788888889989988766542  111  11111111144 455543      2689999999999887664321


Q ss_pred             -------------------------------CCCEE-EEEEcCCCCEEEEEEC-----CC-----------eEEEEECCC
Q psy14440        502 -------------------------------GHPVW-DIKFSPHGYYFASAGH-----DR-----------MARLWATDS  533 (711)
Q Consensus       502 -------------------------------~~~V~-~v~~sp~g~~l~sgs~-----Dg-----------~i~lwd~~~  533 (711)
                                                     ...+| .+.+.+...++..+..     ++           .|.-.|.++
T Consensus       201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T  280 (527)
T TIGR03075       201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT  280 (527)
T ss_pred             CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence                                           11233 2355554555555441     12           566678888


Q ss_pred             CceeEEeecCCCCee---------EEEEcCCCC---EEEEEEcCCcEEEEECCCCcEEEE--------ee---C-CC---
Q psy14440        534 YHPLRLFVGHYSDVD---------CVQFHPNSN---YVATGSSDRTIRLWDCVTGSHVRL--------LT---G-HK---  586 (711)
Q Consensus       534 ~~~~~~~~~h~~~V~---------~v~~sp~~~---~latgs~Dg~I~iwD~~~~~~v~~--------~~---~-h~---  586 (711)
                      ++..-.+.....++.         -+.+..+|+   .++.+..+|.+.+.|..+|+.+..        +.   . ..   
T Consensus       281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p  360 (527)
T TIGR03075       281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRP  360 (527)
T ss_pred             CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCC
Confidence            888777664322221         222324665   688899999999999999987621        10   0 00   


Q ss_pred             ---------------CCe-----------EEEEEecCCCEEEEEeC---------------------------------C
Q psy14440        587 ---------------APV-----------YALSFSVCGRFLASAGG---------------------------------D  607 (711)
Q Consensus       587 ---------------~~I-----------~~la~spdg~~Lasgs~---------------------------------D  607 (711)
                                     ..+           ..++++|+..+++....                                 -
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~  440 (527)
T TIGR03075       361 IEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHM  440 (527)
T ss_pred             ccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCc
Confidence                           000           11456665555443322                                 2


Q ss_pred             CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCc
Q psy14440        608 GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDE  663 (711)
Q Consensus       608 g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~  663 (711)
                      |.|.-+|+.+|+.+-..........+. ..-.|.+++.++.||.++.+|.++.+..
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~l  495 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEEL  495 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEe
Confidence            468888888988877665322111222 2224567777888999999999886554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK10115 protease 2; Provisional

Probab=97.47  E-value=0.14  Score=60.67  Aligned_cols=240  Identities=8%  Similarity=0.023  Sum_probs=120.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEE
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSF  468 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~f  468 (711)
                      .+..+.|||||++||.+.+.+                          +.+...+++.|..++..+........  ..++|
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~--------------------------G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w  179 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFL--------------------------SRRQYGIRFRNLETGNWYPELLDNVE--PSFVW  179 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCC--------------------------CcEEEEEEEEECCCCCCCCccccCcc--eEEEE
Confidence            466788999999998875432                          11122333444444432211111111  56899


Q ss_pred             cCCCCEEEEEeCC------CeEEEEECCCC--eEEEEEecCCCCEE-EEEEcCCCCEEEEEEC---CCeEEEEECC--CC
Q psy14440        469 SPDRSLLLSCSQD------NTIRLWSLLLW--RCLVVYKGHGHPVW-DIKFSPHGYYFASAGH---DRMARLWATD--SY  534 (711)
Q Consensus       469 spdg~~L~s~s~D------g~V~iwdl~t~--~~~~~~~~h~~~V~-~v~~sp~g~~l~sgs~---Dg~i~lwd~~--~~  534 (711)
                      ++|++.|+.+..+      ..|+.+++.++  +....+.......+ .+..+.++++++..+.   ++.+.+|+.+  .+
T Consensus       180 ~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~  259 (686)
T PRK10115        180 ANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA  259 (686)
T ss_pred             eeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC
Confidence            9999876655432      35888888877  44455554444444 3333447777665543   4568888853  33


Q ss_pred             ceeEEeecCCCCeeEEEEcCCCCEEEEEEc----CCcEEEEECCCCcEEEEeeCC-C-CCeEEEEEecCCCEEEEEeCCC
Q psy14440        535 HPLRLFVGHYSDVDCVQFHPNSNYVATGSS----DRTIRLWDCVTGSHVRLLTGH-K-APVYALSFSVCGRFLASAGGDG  608 (711)
Q Consensus       535 ~~~~~~~~h~~~V~~v~~sp~~~~latgs~----Dg~I~iwD~~~~~~v~~~~~h-~-~~I~~la~spdg~~Lasgs~Dg  608 (711)
                      .....+ .+...+..-..+.. ..+..-+.    ...|...++........+..+ . ..|..+.++ .+.++++...+|
T Consensus       260 ~~~~~~-~~~~~~~~~~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g  336 (686)
T PRK10115        260 EPFVFL-PRRKDHEYSLDHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRG  336 (686)
T ss_pred             CceEEE-ECCCCCEEEEEeCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCC
Confidence            322222 22222222222333 33333332    123444455421222334444 2 368888887 334555666666


Q ss_pred             cE--EEEECCCCeEEEEee-CCCCCEEEEEEe--CCC-CEEEEEeC---CCcEEEEeCCCC
Q psy14440        609 NV--HMWDLSNGHLLTLLT-GHTDVVRALCFS--RDG-NILASSGQ---DCSVKLWDFAKL  660 (711)
Q Consensus       609 ~I--~iwDl~sg~~i~~l~-~h~~~V~sl~fs--pdg-~~Lasgs~---Dg~V~iWdl~~~  660 (711)
                      .-  .++|..++ .+..+. .....+..+.++  +++ .++++.+.   -+.+..||+.+.
T Consensus       337 ~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        337 LTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             EEEEEEEcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence            54  44554433 334333 222233334444  333 35544443   356888887653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.45  E-value=0.038  Score=58.52  Aligned_cols=188  Identities=17%  Similarity=0.144  Sum_probs=116.8

Q ss_pred             EEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeec--
Q psy14440        466 LSFSPDRSLL-LSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG--  542 (711)
Q Consensus       466 l~fspdg~~L-~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~--  542 (711)
                      -.|.++...| .+--..+.|.-|+..+++... +. +...+.++..-..+..|+++.  .-+++++.+++..+..+..  
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence            3466666644 444456788888887664332 22 222334444443444555553  3456677665554333321  


Q ss_pred             ---CCCCeeEEEEcCCCCEEEEEEc-----------CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC-
Q psy14440        543 ---HYSDVDCVQFHPNSNYVATGSS-----------DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD-  607 (711)
Q Consensus       543 ---h~~~V~~v~~sp~~~~latgs~-----------Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D-  607 (711)
                         .....+.+..+|+|.+.++...           -|.|+.+|. .+..++.+..+-..-+.|+|||||+.|+.+... 
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~  184 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA  184 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence               2245667888999988776544           133444443 577777777777777899999999988877654 


Q ss_pred             CcEEEEECCC--C----eE-EEEeeCCCCCEEEEEEeCCCCEEEEEeCCC-cEEEEeCC
Q psy14440        608 GNVHMWDLSN--G----HL-LTLLTGHTDVVRALCFSRDGNILASSGQDC-SVKLWDFA  658 (711)
Q Consensus       608 g~I~iwDl~s--g----~~-i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg-~V~iWdl~  658 (711)
                      +.|.-|++..  +    +. ...+....+..-.++...+|++.+++..+| .|.+|+-.
T Consensus       185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence            7888887752  2    11 222223446667888889999886555554 89999876

>KOG2444|consensus

Probab=97.41  E-value=0.00019  Score=70.27  Aligned_cols=146  Identities=15%  Similarity=0.202  Sum_probs=96.1

Q ss_pred             EEEEEECCCeEEEEECCCCcee-EEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-CcEEEEeeCCCCCeEE-E
Q psy14440        516 YFASAGHDRMARLWATDSYHPL-RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT-GSHVRLLTGHKAPVYA-L  592 (711)
Q Consensus       516 ~l~sgs~Dg~i~lwd~~~~~~~-~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~-~~~v~~~~~h~~~I~~-l  592 (711)
                      .+...+.||.|+-++++..+.. +.-.-|......+   .-+..+++|+.+|.|.+|.... |.....+..-...|.+ |
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I  108 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI  108 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence            3445567888887777643211 1111111111111   2356789999999999998762 2222222222222332 3


Q ss_pred             EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCC-CCEEEEEEeCCCCEEEEE--eCCCcEEEEeCCCCCCcc
Q psy14440        593 SFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHT-DVVRALCFSRDGNILASS--GQDCSVKLWDFAKLSDEV  664 (711)
Q Consensus       593 a~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~-~~V~sl~fspdg~~Lasg--s~Dg~V~iWdl~~~~~~~  664 (711)
                      .--.++.+..+++.||.|+.|++.-++.+.....|+ ..+..+..+..+.+|+++  |.|..++.|++....+..
T Consensus       109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~  183 (238)
T KOG2444|consen  109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDES  183 (238)
T ss_pred             ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhccC
Confidence            333456688899999999999999999988888888 677777777788899998  999999999998766543

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.39  E-value=0.005  Score=71.04  Aligned_cols=149  Identities=15%  Similarity=0.155  Sum_probs=91.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEE------CCCeEEEE--ECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcC--------
Q psy14440        502 GHPVWDIKFSPHGYYFASAG------HDRMARLW--ATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD--------  565 (711)
Q Consensus       502 ~~~V~~v~~sp~g~~l~sgs------~Dg~i~lw--d~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D--------  565 (711)
                      ...+.+.+++++|..++...      .|..-.||  +.. +.......+  ....+-.|+|+|..|++.+..        
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence            34677899999999887765      24444444  542 223233333  238889999999988877633        


Q ss_pred             ----CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEE---EECCCCeE-E---EEee-CCCCCEEE
Q psy14440        566 ----RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHM---WDLSNGHL-L---TLLT-GHTDVVRA  633 (711)
Q Consensus       566 ----g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~i---wDl~sg~~-i---~~l~-~h~~~V~s  633 (711)
                          +.+.+.++..+....   ...+.|..+.|||||..|+... +|.|++   -....|.. +   ..+. +-...+.+
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence                223333443333222   2356799999999999988765 477777   44445541 1   1122 22344688


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        634 LCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       634 l~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      +.|..++.++ ++..++...+|.+.
T Consensus       502 l~W~~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        502 LDWRTGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             ceEecCCEEE-EEecCCCCceEEEe
Confidence            9999998855 55556656667654

>KOG4649|consensus

Probab=97.39  E-value=0.082  Score=53.04  Aligned_cols=145  Identities=12%  Similarity=-0.079  Sum_probs=96.5

Q ss_pred             CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEE
Q psy14440        472 RSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQ  551 (711)
Q Consensus       472 g~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~  551 (711)
                      ..+++.||..+.+...|..++....... -...|.+-+.- -|++++.|...|.+++.+..++.....+..-..--....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence            3467777888888888888877665432 12233322222 467899999999999999999987777664322222334


Q ss_pred             EcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q psy14440        552 FHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNG  618 (711)
Q Consensus       552 ~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg  618 (711)
                      ..+++..+.+|+.|++.+..|.++..++...+-..+...+-+..+....|..+...|.|.--..+.+
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            4668999999999999999999999998886644444444455553334444455555554444443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.39  E-value=0.0033  Score=73.58  Aligned_cols=135  Identities=15%  Similarity=0.123  Sum_probs=97.8

Q ss_pred             ECCCeEEEEECCCCceeEEeecCCCC-eeEEEEcC-----CCCEEEEEEcCCcEEEEECCCCc-EEEEee----CCCCCe
Q psy14440        521 GHDRMARLWATDSYHPLRLFVGHYSD-VDCVQFHP-----NSNYVATGSSDRTIRLWDCVTGS-HVRLLT----GHKAPV  589 (711)
Q Consensus       521 s~Dg~i~lwd~~~~~~~~~~~~h~~~-V~~v~~sp-----~~~~latgs~Dg~I~iwD~~~~~-~v~~~~----~h~~~I  589 (711)
                      .....++-.|++.|+.+..+..|... |..++=..     +....++|-.+..+..||.+-.. .+..-.    ..+...
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            35678999999999999999877644 44443221     23456788889999999998642 221111    234567


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCCeE-EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        590 YALSFSVCGRFLASAGGDGNVHMWDLSNGHL-LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       590 ~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~-i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      +|++-+.+| +||+|+.+|.|++||- .|+. -..+.+-+.+|.+|..+.||++|++.+ +..|.+++..
T Consensus       581 s~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  581 SCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             eEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence            788877766 7899999999999994 4433 334557788999999999999988766 6688888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.38  E-value=0.14  Score=58.66  Aligned_cols=176  Identities=15%  Similarity=0.226  Sum_probs=107.6

Q ss_pred             EEEcCCCCEEEEEeCC-----C-----------eEEEEECCCCeEEEEEecCCCCEEEEE---------EcCCCC---EE
Q psy14440        466 LSFSPDRSLLLSCSQD-----N-----------TIRLWSLLLWRCLVVYKGHGHPVWDIK---------FSPHGY---YF  517 (711)
Q Consensus       466 l~fspdg~~L~s~s~D-----g-----------~V~iwdl~t~~~~~~~~~h~~~V~~v~---------~sp~g~---~l  517 (711)
                      +++.+...+++.+..+     +           .|...|++|++..-.++...+.+|+..         +..+|+   .+
T Consensus       239 ~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v  318 (527)
T TIGR03075       239 GSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLL  318 (527)
T ss_pred             eeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEE
Confidence            3566666666655421     2           577788999999988886555555432         223555   77


Q ss_pred             EEEECCCeEEEEECCCCceeEE--------ee---c-CC-CC-----------------e-----------eEEEEcCCC
Q psy14440        518 ASAGHDRMARLWATDSYHPLRL--------FV---G-HY-SD-----------------V-----------DCVQFHPNS  556 (711)
Q Consensus       518 ~sgs~Dg~i~lwd~~~~~~~~~--------~~---~-h~-~~-----------------V-----------~~v~~sp~~  556 (711)
                      +.++.+|.+.+.|.++++.+..        +.   + .. .+                 +           ..++++|+.
T Consensus       319 ~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~  398 (527)
T TIGR03075       319 AHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKT  398 (527)
T ss_pred             EEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCC
Confidence            8999999999999999987521        10   0 00 00                 0           125566655


Q ss_pred             CEEEEEEcC---------------------------------CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEE
Q psy14440        557 NYVATGSSD---------------------------------RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       557 ~~latgs~D---------------------------------g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Las  603 (711)
                      .+++....+                                 |.|.-+|+.+|+.+-.+........+. +.-.|.+++.
T Consensus       399 g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~  477 (527)
T TIGR03075       399 GLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFY  477 (527)
T ss_pred             CEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEE
Confidence            555443322                                 457778888888776654222111121 2224567778


Q ss_pred             EeCCCcEEEEECCCCeEEEEeeCCCCCEE-EEEEeCCCCE
Q psy14440        604 AGGDGNVHMWDLSNGHLLTLLTGHTDVVR-ALCFSRDGNI  642 (711)
Q Consensus       604 gs~Dg~I~iwDl~sg~~i~~l~~h~~~V~-sl~fspdg~~  642 (711)
                      ++.+|.++.+|.++|+.+..++-..+..- =+.|.-+|+.
T Consensus       478 g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q  517 (527)
T TIGR03075       478 GTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ  517 (527)
T ss_pred             ECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence            88899999999999999988875432211 1233445653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.37  E-value=0.016  Score=67.03  Aligned_cols=181  Identities=13%  Similarity=0.082  Sum_probs=105.4

Q ss_pred             cCCEEEEEEcCCCCEEEEEe------CCC--eEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC--------
Q psy14440        460 EGPVRKLSFSPDRSLLLSCS------QDN--TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD--------  523 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s------~Dg--~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D--------  523 (711)
                      ...+.+.++++||+.++...      .|+  .|.+++.. +.......+.  ..+.-.|+|+|..+++.+..        
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            34678899999999877665      243  45555542 3333333332  37788999998877777532        


Q ss_pred             ----CeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEE---EECCCCcEEEE-----ee-CCCCCeE
Q psy14440        524 ----RMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRL---WDCVTGSHVRL-----LT-GHKAPVY  590 (711)
Q Consensus       524 ----g~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~i---wD~~~~~~v~~-----~~-~h~~~I~  590 (711)
                          +.+.+.+++.+....   .....|..+.|+|||..++... +|.|.+   -....|. .+.     +. +-...+.
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~  500 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAV  500 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccc
Confidence                223323443333222   2345799999999999998876 577776   4434454 222     22 2333468


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECC-CCeEEEEeeC--CCCCEEEEEEeCCCCEEEEEeCCCc
Q psy14440        591 ALSFSVCGRFLASAGGDGNVHMWDLS-NGHLLTLLTG--HTDVVRALCFSRDGNILASSGQDCS  651 (711)
Q Consensus       591 ~la~spdg~~Lasgs~Dg~I~iwDl~-sg~~i~~l~~--h~~~V~sl~fspdg~~Lasgs~Dg~  651 (711)
                      ++.|..++.++ ++..++...+|.+. .|.....+.+  ....+.+++=++  ..|+.+..+|.
T Consensus       501 ~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~--~~iyv~~~~g~  561 (591)
T PRK13616        501 SLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP--STVYVTDARAV  561 (591)
T ss_pred             cceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCC--ceEEEEcCCce
Confidence            89999999855 55554544455432 1332222232  245677776664  24555566663

>smart00320 WD40 WD40 repeats

Probab=97.30  E-value=0.00072  Score=45.68  Aligned_cols=39  Identities=51%  Similarity=0.871  Sum_probs=34.9

Q ss_pred             CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        618 GHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       618 g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      ++.+..+..|...|.+++|++++.++++++.||.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456677788899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3617|consensus

Probab=97.26  E-value=0.00044  Score=78.14  Aligned_cols=111  Identities=21%  Similarity=0.287  Sum_probs=91.3

Q ss_pred             eeEEEEcCCCCEEEEEE----cCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy14440        547 VDCVQFHPNSNYVATGS----SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLT  622 (711)
Q Consensus       547 V~~v~~sp~~~~latgs----~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~  622 (711)
                      -+-+.|||...++|+++    ..|.|.||- .+|+.-+... ..-.++++||+|..-.|++|-.-|.+.+|...+.+.-.
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence            34568999999988876    367888885 5676544332 22346779999999899999999999999988887777


Q ss_pred             EeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        623 LLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       623 ~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ....|...|..+.||++|+.|+++..-|.|.+|.+..
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            7788999999999999999999999999999998874

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.24  E-value=0.22  Score=51.00  Aligned_cols=182  Identities=13%  Similarity=0.107  Sum_probs=119.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeEEEEEecC-CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeE
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDN--TIRLWSLLLWRCLVVYKGH-GHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLR  538 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg--~V~iwdl~t~~~~~~~~~h-~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~  538 (711)
                      -..++.|..+|.++-|.+.-|  .|+.+|+.+++......-. ...--.++... ++.+...-.++.+.+||.++.+.+.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEE
Confidence            345788877888888888766  6999999999887665432 22223344432 3344444578999999999998888


Q ss_pred             EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC-----CCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy14440        539 LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH-----KAPVYALSFSVCGRFLASAGGDGNVHMW  613 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h-----~~~I~~la~spdg~~Lasgs~Dg~I~iw  613 (711)
                      .+.-. +.=..++  .++..|+.+.....++++|-.+.+.++.+...     -..++-+.|- +|...|=.-....|...
T Consensus       125 ~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I  200 (264)
T PF05096_consen  125 TFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI  200 (264)
T ss_dssp             EEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence            87543 3445555  36777887777888999999888877766532     1246667775 67666666667789999


Q ss_pred             ECCCCeEEEEeeC------------C---CCCEEEEEEeCCCCEEEEEeC
Q psy14440        614 DLSNGHLLTLLTG------------H---TDVVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       614 Dl~sg~~i~~l~~------------h---~~~V~sl~fspdg~~Lasgs~  648 (711)
                      |..+|+.+..+..            +   .+..+.|+|.++++.|...|.
T Consensus       201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            9999999887631            1   246899999987765555553

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.21  E-value=0.19  Score=52.26  Aligned_cols=216  Identities=16%  Similarity=0.153  Sum_probs=125.2

Q ss_pred             ccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE------------
Q psy14440        430 LQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV------------  497 (711)
Q Consensus       430 ~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~------------  497 (711)
                      ...+.+|+++| +++++........... +...|..+...++-+.|++-+ |+.++++++........            
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence            45677788888 7788772222222222 233499999999887777665 49999999865443331            


Q ss_pred             --EecCCCCEEEEE--EcCCCCEEEEEECCCeEEEEECCCC-----ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcE
Q psy14440        498 --YKGHGHPVWDIK--FSPHGYYFASAGHDRMARLWATDSY-----HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTI  568 (711)
Q Consensus       498 --~~~h~~~V~~v~--~sp~g~~l~sgs~Dg~i~lwd~~~~-----~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I  568 (711)
                        .......+...+  -...+...+++...++|.+|.....     +..+.+. -...+.+++|.  ++.++.|..+ ..
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~f  159 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-GF  159 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-ce
Confidence              011223344444  1123334444445568888876542     3445554 34778899998  6678888744 48


Q ss_pred             EEEECCCCcEEEEeeCCC------------CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE--EeeCCCCCEEEE
Q psy14440        569 RLWDCVTGSHVRLLTGHK------------APVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLT--LLTGHTDVVRAL  634 (711)
Q Consensus       569 ~iwD~~~~~~v~~~~~h~------------~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~--~l~~h~~~V~sl  634 (711)
                      .+.|+.++.....+....            .++..+.. +++.+|++.  |..-.+.| ..|+..+  .+.. .....++
T Consensus       160 ~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~W-~~~p~~~  234 (275)
T PF00780_consen  160 YLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVN-KNGEPSRKSTIQW-SSAPQSV  234 (275)
T ss_pred             EEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEc-CCCCcCcccEEEc-CCchhEE
Confidence            889999877655442111            23333333 345666643  22333334 3554433  2332 2345566


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        635 CFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       635 ~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      ++.  ..+|+..+. +.|.||++.+.
T Consensus       235 ~~~--~pyli~~~~-~~iEV~~~~~~  257 (275)
T PF00780_consen  235 AYS--SPYLIAFSS-NSIEVRSLETG  257 (275)
T ss_pred             EEE--CCEEEEECC-CEEEEEECcCC
Confidence            664  457777665 56999999874

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.16  E-value=0.18  Score=54.32  Aligned_cols=214  Identities=16%  Similarity=0.157  Sum_probs=107.8

Q ss_pred             EecCCCeeEEEeecccCCEE-----EEEEcCCCCEEEEEeC-CC--eEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCE
Q psy14440        445 MDERNAETTRTLVGHEGPVR-----KLSFSPDRSLLLSCSQ-DN--TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYY  516 (711)
Q Consensus       445 ~d~~~~~~~~~l~~h~~~V~-----~l~fspdg~~L~s~s~-Dg--~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~  516 (711)
                      .|..++..+..|..+.+...     .=+|..||+.|+.++. ||  .+.+.|+.+++..+...+.........++++++.
T Consensus        15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~   94 (386)
T PF14583_consen   15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA   94 (386)
T ss_dssp             E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred             eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence            36677877777775554333     3367789977666554 54  5777788888887766643333335667788888


Q ss_pred             EEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEc--CCCCEEEEEEc---C-------------------CcEEEEE
Q psy14440        517 FASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFH--PNSNYVATGSS---D-------------------RTIRLWD  572 (711)
Q Consensus       517 l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~s--p~~~~latgs~---D-------------------g~I~iwD  572 (711)
                      ++-......++-.|+++.+...++......+-...|.  .++..++..-.   |                   ..|.-.|
T Consensus        95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id  174 (386)
T PF14583_consen   95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID  174 (386)
T ss_dssp             EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred             EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence            7777677889999999988766666666666556664  35555443211   1                   2356668


Q ss_pred             CCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECC-CCeEEEEeeCCC--CCEEEEEEeCCCCEEE
Q psy14440        573 CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG-----NVHMWDLS-NGHLLTLLTGHT--DVVRALCFSRDGNILA  644 (711)
Q Consensus       573 ~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg-----~I~iwDl~-sg~~i~~l~~h~--~~V~sl~fspdg~~La  644 (711)
                      +.+|+....+. -...+.-+.|||....+++=|..|     .-+||-++ .|...+.+..|.  ..+..=-|++||..|.
T Consensus       175 l~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~  253 (386)
T PF14583_consen  175 LKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW  253 (386)
T ss_dssp             TTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred             CCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence            88887544444 566788899999655444443322     12556543 344444444443  2344446888888654


Q ss_pred             EEe-----CCCcEEEEeCCC
Q psy14440        645 SSG-----QDCSVKLWDFAK  659 (711)
Q Consensus       645 sgs-----~Dg~V~iWdl~~  659 (711)
                      --+     .+..|.-+|+.+
T Consensus       254 y~~~~~~~~~~~i~~~d~~t  273 (386)
T PF14583_consen  254 YDSYTPGGQDFWIAGYDPDT  273 (386)
T ss_dssp             EEEEETTT--EEEEEE-TTT
T ss_pred             EEeecCCCCceEEEeeCCCC
Confidence            422     133455555554

>smart00320 WD40 WD40 repeats

Probab=97.13  E-value=0.0012  Score=44.46  Aligned_cols=39  Identities=44%  Similarity=0.904  Sum_probs=34.8

Q ss_pred             CcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q psy14440        576 GSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD  614 (711)
Q Consensus       576 ~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwD  614 (711)
                      ++.+..+..|...|.+++|++++.++++++.||.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            455677778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PHA02713 hypothetical protein; Provisional

Probab=97.11  E-value=0.021  Score=65.97  Aligned_cols=183  Identities=9%  Similarity=0.055  Sum_probs=93.8

Q ss_pred             CCCEEEEEeCC------CeEEEEECCCCeE--EEEEecCCCCEEEEEEcCCCCEEEEEECCC-----eEEEEECCCCc--
Q psy14440        471 DRSLLLSCSQD------NTIRLWSLLLWRC--LVVYKGHGHPVWDIKFSPHGYYFASAGHDR-----MARLWATDSYH--  535 (711)
Q Consensus       471 dg~~L~s~s~D------g~V~iwdl~t~~~--~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg-----~i~lwd~~~~~--  535 (711)
                      ++...+.||.+      .++..||..+..-  +..+....... +++ .-+|+..+.||.++     ++..||..+..  
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            55566666643      3477888765432  21111111111 122 22577788888754     47788887542  


Q ss_pred             eeEEeecCCCCeeEEEEcCCCCEEEEEEcCC-----------------------cEEEEECCCCcEEEEeeCCCCCeEEE
Q psy14440        536 PLRLFVGHYSDVDCVQFHPNSNYVATGSSDR-----------------------TIRLWDCVTGSHVRLLTGHKAPVYAL  592 (711)
Q Consensus       536 ~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg-----------------------~I~iwD~~~~~~v~~~~~h~~~I~~l  592 (711)
                      .+..+.........+.+  ++...+.|+.++                       +|..||..+.+=...-.-.......-
T Consensus       381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~  458 (557)
T PHA02713        381 MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG  458 (557)
T ss_pred             ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence            21111111111222222  577777776542                       46778876653221111111111111


Q ss_pred             EEecCCCEEEEEeCC------CcEEEEECCC-C--eEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCC--cEEEEeCCC
Q psy14440        593 SFSVCGRFLASAGGD------GNVHMWDLSN-G--HLLTLLTGHTDVVRALCFSRDGNILASSGQDC--SVKLWDFAK  659 (711)
Q Consensus       593 a~spdg~~Lasgs~D------g~I~iwDl~s-g--~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg--~V~iWdl~~  659 (711)
                      +..-+|+..+.||.+      ..|..||..+ .  +.+..+..........++  +|++.++||.||  ++..||..+
T Consensus       459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence            223357777777754      2467899886 3  344445443333333333  688999999998  666666654

>KOG4640|consensus

Probab=97.10  E-value=0.0021  Score=71.17  Aligned_cols=93  Identities=16%  Similarity=0.199  Sum_probs=79.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCee-EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE
Q psy14440        502 GHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVD-CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR  580 (711)
Q Consensus       502 ~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~-~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~  580 (711)
                      ...|..+.|+|.-..||++..+|.+.++-++ .+.+.++.-+...++ +++|.|||+.||+|-.||+|++.|+.+|..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3457789999999999999999999999888 777888877778887 99999999999999999999999999998776


Q ss_pred             Eee-CCCCCeEEEEEe
Q psy14440        581 LLT-GHKAPVYALSFS  595 (711)
Q Consensus       581 ~~~-~h~~~I~~la~s  595 (711)
                      .+. .-...|.++-|+
T Consensus        99 ~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWD  114 (665)
T ss_pred             ccccccccchheeecc
Confidence            632 245667888886

>KOG4640|consensus

Probab=97.09  E-value=0.0025  Score=70.64  Aligned_cols=93  Identities=17%  Similarity=0.267  Sum_probs=80.9

Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEE-EEEEcCCCCEEEEEECCCeEEEEECCCCceeE
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVW-DIKFSPHGYYFASAGHDRMARLWATDSYHPLR  538 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~-~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~  538 (711)
                      ...|.-+.|+|.-..+|.+..+|.|.+..+. ++.+.++.-|+..++ +++|.+||+.+|+|-.||+|++.|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3458889999999999999999999999998 899999988888888 99999999999999999999999999987766


Q ss_pred             Ee-ecCCCCeeEEEEc
Q psy14440        539 LF-VGHYSDVDCVQFH  553 (711)
Q Consensus       539 ~~-~~h~~~V~~v~~s  553 (711)
                      .+ ..-..+|.++-|.
T Consensus        99 ~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWD  114 (665)
T ss_pred             ccccccccchheeecc
Confidence            52 2345678888886

>KOG2444|consensus

Probab=97.07  E-value=0.00071  Score=66.41  Aligned_cols=141  Identities=13%  Similarity=0.077  Sum_probs=88.0

Q ss_pred             EEEEEeCCCeEEEEECCCCeEEEE-EecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-ceeEEeecCCCCeeEEE
Q psy14440        474 LLLSCSQDNTIRLWSLLLWRCLVV-YKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY-HPLRLFVGHYSDVDCVQ  551 (711)
Q Consensus       474 ~L~s~s~Dg~V~iwdl~t~~~~~~-~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~h~~~V~~v~  551 (711)
                      .|...+.||.|+-+++..-+.-.. -.-|...   .....-+..+++|+.+|.|.+|..... .....+..-...|.|+.
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I  108 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI  108 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence            345557788888888753221111 0111111   111123457899999999999987622 11222222233344433


Q ss_pred             -EcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCC-CCeEEEEEecCCCEEEEE--eCCCcEEEEECCC
Q psy14440        552 -FHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHK-APVYALSFSVCGRFLASA--GGDGNVHMWDLSN  617 (711)
Q Consensus       552 -~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~-~~I~~la~spdg~~Lasg--s~Dg~I~iwDl~s  617 (711)
                       -..++.+..+++.||.||.|++.-++.+-....|. ..+..+..+..+++|+++  |.|..++.|++..
T Consensus       109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence             22356688899999999999999988887777777 566666666667777777  7777777777654

>PRK15319 AIDA autotransporter-like protein ShdA; Provisional

Probab=97.07  E-value=0.0011  Score=81.55  Aligned_cols=15  Identities=20%  Similarity=0.211  Sum_probs=9.5

Q ss_pred             hhcCccEEEeCHHHH
Q psy14440        231 FRSTEFIIRMSRDTL  245 (711)
Q Consensus       231 ~~~~k~~v~~s~~~~  245 (711)
                      |+.+.|.+.+--+.+
T Consensus      1784 ~Dsn~y~lQLGgDil 1798 (2039)
T PRK15319       1784 MDSNYSQFQLGGDIL 1798 (2039)
T ss_pred             eecceEEEEEcchhh
Confidence            556777777665533

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.97  E-value=0.26  Score=54.24  Aligned_cols=76  Identities=17%  Similarity=0.284  Sum_probs=53.9

Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEE-EEEeCC-----------------CCEE-EEE
Q psy14440        586 KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRA-LCFSRD-----------------GNIL-ASS  646 (711)
Q Consensus       586 ~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~s-l~fspd-----------------g~~L-asg  646 (711)
                      ...+.+|+.+|++++.|+.+.=|+|.++|+.++..++.++|..+.=.. +.....                 ..+| +-+
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            445888999999999999888899999999999999988887643111 111111                 1123 335


Q ss_pred             eCCCcEEEEeCCCCC
Q psy14440        647 GQDCSVKLWDFAKLS  661 (711)
Q Consensus       647 s~Dg~V~iWdl~~~~  661 (711)
                      -.-|.|.||+++...
T Consensus       387 prRg~lEvW~~~~g~  401 (415)
T PF14655_consen  387 PRRGILEVWSMRQGP  401 (415)
T ss_pred             ccCCeEEEEecCCCC
Confidence            568899999987643

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.95  E-value=0.84  Score=49.79  Aligned_cols=180  Identities=17%  Similarity=0.173  Sum_probs=91.5

Q ss_pred             EcCCCCEEEEEeC------CCeEEEEECCCCeEEEEEecC---CCCEEEEEEcCCCCEEEEEEC----------------
Q psy14440        468 FSPDRSLLLSCSQ------DNTIRLWSLLLWRCLVVYKGH---GHPVWDIKFSPHGYYFASAGH----------------  522 (711)
Q Consensus       468 fspdg~~L~s~s~------Dg~V~iwdl~t~~~~~~~~~h---~~~V~~v~~sp~g~~l~sgs~----------------  522 (711)
                      .-|+|+.++|+-.      -|.+.+.|-++.+....+...   ...-+++-|.|..+.++|...                
T Consensus       137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~  216 (461)
T PF05694_consen  137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE  216 (461)
T ss_dssp             E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred             ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence            3468888887632      255889999988888877643   334567888898888888743                


Q ss_pred             ----CCeEEEEECCCCceeEEeecCCC--CeeEEEEcC--CCCEEEEEE-cCCcEEEEEC-CCCc----EEEEeeC----
Q psy14440        523 ----DRMARLWATDSYHPLRLFVGHYS--DVDCVQFHP--NSNYVATGS-SDRTIRLWDC-VTGS----HVRLLTG----  584 (711)
Q Consensus       523 ----Dg~i~lwd~~~~~~~~~~~~h~~--~V~~v~~sp--~~~~latgs-~Dg~I~iwD~-~~~~----~v~~~~~----  584 (711)
                          ..++.+||..+.+.++++.--..  -...|.|..  +..+=++|+ -.++|..|-- ..++    .+..+..    
T Consensus       217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~  296 (461)
T PF05694_consen  217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE  296 (461)
T ss_dssp             HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred             cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence                46899999999999988864332  345677744  455544444 3445554432 3332    1222211    


Q ss_pred             -C------------CCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCC---eEEEEee-C---------------CCCCE
Q psy14440        585 -H------------KAPVYALSFSVCGRFLASAG-GDGNVHMWDLSNG---HLLTLLT-G---------------HTDVV  631 (711)
Q Consensus       585 -h------------~~~I~~la~spdg~~Lasgs-~Dg~I~iwDl~sg---~~i~~l~-~---------------h~~~V  631 (711)
                       -            ..-|+.|.+|-|.++|..++ .+|.|+.||+...   +++..+. |               -.+..
T Consensus       297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP  376 (461)
T PF05694_consen  297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP  376 (461)
T ss_dssp             SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred             cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence             0            24579999999999998776 5899999999763   4444332 1               01234


Q ss_pred             EEEEEeCCCCEEEEEe
Q psy14440        632 RALCFSRDGNILASSG  647 (711)
Q Consensus       632 ~sl~fspdg~~Lasgs  647 (711)
                      .-+..|-||+.|...+
T Consensus       377 qMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  377 QMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             --EEE-TTSSEEEEE-
T ss_pred             CeEEEccCCeEEEEEe
Confidence            5677888888776654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2395|consensus

Probab=96.92  E-value=0.012  Score=64.12  Aligned_cols=139  Identities=14%  Similarity=0.210  Sum_probs=101.0

Q ss_pred             EEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCC-------EEEEEEcCCcEEEEECCCCc--EEEEeeCC-
Q psy14440        516 YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSN-------YVATGSSDRTIRLWDCVTGS--HVRLLTGH-  585 (711)
Q Consensus       516 ~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-------~latgs~Dg~I~iwD~~~~~--~v~~~~~h-  585 (711)
                      ++.++.....++-.|++.|+.+..+.-+.. |+-+.+.|+.+       .-+.|-+|..|.-||.+-..  .+....+| 
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            445566667788889999999988876655 88888888643       23457778999999987322  23333333 


Q ss_pred             ---CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE-EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        586 ---KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL-LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       586 ---~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~-i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                         .....|++-..+| +|++||.+|.|++||- .++. -..+.+.+.+|..+..+.+|++|++.+ +..+.+-++.
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence               2345566655555 8899999999999996 4443 445678889999999999999988655 6677777764

>KOG2079|consensus

Probab=96.91  E-value=0.0022  Score=74.86  Aligned_cols=101  Identities=23%  Similarity=0.384  Sum_probs=76.5

Q ss_pred             CCCEEEEEEcCCcEEEEECCCCcE-EEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEE
Q psy14440        555 NSNYVATGSSDRTIRLWDCVTGSH-VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRA  633 (711)
Q Consensus       555 ~~~~latgs~Dg~I~iwD~~~~~~-v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~s  633 (711)
                      .+..++.|++.|.|-..|+...-+ ...-..-.++|++++|+.+|+.++.|-.+|.|.+||+..++.++.+..|..++++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            456789999999999999765411 1111224579999999999999999999999999999999999988877655444


Q ss_pred             E---EEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        634 L---CFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       634 l---~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      +   .+..++..++++...|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            4   44556667888777776  5654

>KOG1923|consensus

Probab=96.91  E-value=0.0024  Score=72.18  Aligned_cols=15  Identities=33%  Similarity=0.401  Sum_probs=7.8

Q ss_pred             HhhCCCchhHHHHHh
Q psy14440         99 LRQYNLRGTEEQLKK  113 (711)
Q Consensus        99 l~k~g~~~~e~~l~~  113 (711)
                      |+++.+.+-|++|+-
T Consensus       398 l~~lD~~~~ee~Fk~  412 (830)
T KOG1923|consen  398 LEALDFSRFEEQFKI  412 (830)
T ss_pred             HHhhhHHHHHHHHHh
Confidence            444455555555554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.88  E-value=0.071  Score=46.97  Aligned_cols=101  Identities=23%  Similarity=0.254  Sum_probs=68.7

Q ss_pred             eeEEEEcC---C-CCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy14440        547 VDCVQFHP---N-SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLT  622 (711)
Q Consensus       547 V~~v~~sp---~-~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~  622 (711)
                      |+++++..   + .+.|++||.|..||+|+  ....+..+. -.+.|++++-... ..++.|-.+|+|-+|+-  ...+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            55666554   2 26799999999999997  346666666 4566788876655 56788889999999985  33344


Q ss_pred             EeeCCCCCEEEEEEeC---CC-CEEEEEeCCCcEEE
Q psy14440        623 LLTGHTDVVRALCFSR---DG-NILASSGQDCSVKL  654 (711)
Q Consensus       623 ~l~~h~~~V~sl~fsp---dg-~~Lasgs~Dg~V~i  654 (711)
                      ..+.. ..+.++++..   || .-|++|-.+|.|-+
T Consensus        76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            44432 2366666543   33 26888888998753

>KOG1897|consensus

Probab=96.80  E-value=0.56  Score=55.25  Aligned_cols=267  Identities=16%  Similarity=0.161  Sum_probs=142.5

Q ss_pred             CCceEEEEECCCC------CEEEEEeCCCeEEEEeCCCCcee----------------eeccCccccccccccCCcEEE-
Q psy14440        387 RQQVTCAEISEDV------SILAVGFSESYIKLWSLVPQKLK----------------AMKSSDQLQDIEMECDDILVR-  443 (711)
Q Consensus       387 ~~~V~~l~fs~dg------~~LatG~~dg~I~vWdl~~~~~~----------------~~~~~~~~~~l~~~~~d~~i~-  443 (711)
                      ...|.|++++|-|      +++|+|..+..+.+--.......                ......+...+.++..+|.+. 
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            4679999999742      38999988776655543221111                111122345566677777764 


Q ss_pred             -EEecCCCeeEEEee--cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEE-EEEcCC--CCEE
Q psy14440        444 -IMDERNAETTRTLV--GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWD-IKFSPH--GYYF  517 (711)
Q Consensus       444 -i~d~~~~~~~~~l~--~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~-v~~sp~--g~~l  517 (711)
                       ++|..++.....-+  -...++.--.|+..++.-+-|..|.-..+|.....-+...+.  -..+.. +.|+.+  ...+
T Consensus       610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls--~kev~~~c~f~s~a~~d~l  687 (1096)
T KOG1897|consen  610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLS--LKEVNHMCPFNSDAYPDSL  687 (1096)
T ss_pred             EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccc--hHHhhhhcccccccCCceE
Confidence             44655555433222  234566666777655544444445555666544222221111  011111 123221  2344


Q ss_pred             EEEECCCeEEEEECCCCce--eEEeecCCCCeeEEEEcCCCCEEEEEEcC--------------CcEEEEECCCCcEEEE
Q psy14440        518 ASAGHDRMARLWATDSYHP--LRLFVGHYSDVDCVQFHPNSNYVATGSSD--------------RTIRLWDCVTGSHVRL  581 (711)
Q Consensus       518 ~sgs~Dg~i~lwd~~~~~~--~~~~~~h~~~V~~v~~sp~~~~latgs~D--------------g~I~iwD~~~~~~v~~  581 (711)
                      +++. .+.+++.-++..+.  ++++ .-......+++++....+++.+..              ..++++|-++.+.+..
T Consensus       688 ~~~~-~~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~  765 (1096)
T KOG1897|consen  688 ASAN-GGALTIGTIDEIQKLHIRTV-PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSS  765 (1096)
T ss_pred             EEec-CCceEEEEecchhhcceeee-cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEee
Confidence            4443 45567766654332  2332 223445677777644444444321              1366777666554433


Q ss_pred             eeC-CC---CCeEEEEEecC-CCEEEEEeC----------CCcEEEEECCCCeEEEEeeCC--CCCEEEEEEeCCCCEEE
Q psy14440        582 LTG-HK---APVYALSFSVC-GRFLASAGG----------DGNVHMWDLSNGHLLTLLTGH--TDVVRALCFSRDGNILA  644 (711)
Q Consensus       582 ~~~-h~---~~I~~la~spd-g~~Lasgs~----------Dg~I~iwDl~sg~~i~~l~~h--~~~V~sl~fspdg~~La  644 (711)
                      ..- ..   ..|.++.|..| +.++++|..          .|+|.||....+..+.....+  .+.+.++..- +|++||
T Consensus       766 hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA  844 (1096)
T KOG1897|consen  766 HEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA  844 (1096)
T ss_pred             ccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE
Confidence            221 11   23455568777 778888763          488999988775444444333  3566666532 577776


Q ss_pred             EEeCCCcEEEEeCCCC
Q psy14440        645 SSGQDCSVKLWDFAKL  660 (711)
Q Consensus       645 sgs~Dg~V~iWdl~~~  660 (711)
                      .-  ...|++|++.+.
T Consensus       845 ~I--n~~vrLye~t~~  858 (1096)
T KOG1897|consen  845 GI--NQSVRLYEWTTE  858 (1096)
T ss_pred             ec--CcEEEEEEcccc
Confidence            44  568999999875

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.79  E-value=0.22  Score=51.24  Aligned_cols=188  Identities=14%  Similarity=0.191  Sum_probs=125.8

Q ss_pred             eecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC-CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        456 LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH-GHPVWDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       456 l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h-~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      +.|-...|.++.|+|+.+.|++......-.||=...|+.+.++.-. -+....|.|..+|.++++--.++.+.++.++..
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3455566999999999999999988888888877788888876532 223345788888888888888999998877654


Q ss_pred             ceeEE----------eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE---EEEeeCCC-------CCeEEEEE
Q psy14440        535 HPLRL----------FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH---VRLLTGHK-------APVYALSF  594 (711)
Q Consensus       535 ~~~~~----------~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~---v~~~~~h~-------~~I~~la~  594 (711)
                      ..+..          ..........++|.+....|+.+-...-++||.+..+..   +.....+.       ..|.++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            22211          112256678999999999999998888888887764331   11111222       24667777


Q ss_pred             ec-CCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCC---------CEEEEEEeCCCCEEE
Q psy14440        595 SV-CGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTD---------VVRALCFSRDGNILA  644 (711)
Q Consensus       595 sp-dg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~---------~V~sl~fspdg~~La  644 (711)
                      ++ .+.+|+-+.+++.+.-.|. +|..+..+.-+.+         .--.++...+|++.+
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI  299 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI  299 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEE
Confidence            75 5677778888888888886 4555554432211         234566666665433

>KOG2079|consensus

Probab=96.78  E-value=0.013  Score=68.84  Aligned_cols=104  Identities=22%  Similarity=0.341  Sum_probs=74.6

Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEE
Q psy14440        396 SEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLL  475 (711)
Q Consensus       396 s~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L  475 (711)
                      .--+..+|.|++.|.|-..|+.+. +.                             ....=..-.++|++++|+.+|+.+
T Consensus        96 a~~~~~ivi~Ts~ghvl~~d~~~n-L~-----------------------------~~~~ne~v~~~Vtsvafn~dg~~l  145 (1206)
T KOG2079|consen   96 AIVVVPIVIGTSHGHVLLSDMTGN-LG-----------------------------PLHQNERVQGPVTSVAFNQDGSLL  145 (1206)
T ss_pred             eeeeeeEEEEcCchhhhhhhhhcc-cc-----------------------------hhhcCCccCCcceeeEecCCCcee
Confidence            344567888888888877776432 00                             000111235799999999999999


Q ss_pred             EEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEE---EcCCCCEEEEEECCCeEEEEEC
Q psy14440        476 LSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIK---FSPHGYYFASAGHDRMARLWAT  531 (711)
Q Consensus       476 ~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~---~sp~g~~l~sgs~Dg~i~lwd~  531 (711)
                      +.|-.+|.|.+||+.+++.++.+..|..+...+-   |..++..++++...|.  +|.+
T Consensus       146 ~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  146 LAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            9999999999999999999998887777665554   4456667788777775  5543

>KOG2395|consensus

Probab=96.77  E-value=0.021  Score=62.43  Aligned_cols=143  Identities=13%  Similarity=0.169  Sum_probs=99.8

Q ss_pred             CCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCC-------EEEEEECCCeEEEEECCCCc--eeEE
Q psy14440        470 PDRSLL-LSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGY-------YFASAGHDRMARLWATDSYH--PLRL  539 (711)
Q Consensus       470 pdg~~L-~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~-------~l~sgs~Dg~i~lwd~~~~~--~~~~  539 (711)
                      .+.++| .++..-..|+-.|++.|+.+..++-|.. |.-+.+.|+++       .-+.|-.|..|.-||.+-..  .+..
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            344444 4455556689999999999999997766 77777887653       23456678889999987322  2222


Q ss_pred             eecC----CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q psy14440        540 FVGH----YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       540 ~~~h----~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl  615 (711)
                      ..+|    .....|++-..+| |||+||.+|.||+||-...+....+-+-..+|..+..+.+|++|+..+. ..+.+.|+
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t  499 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT  499 (644)
T ss_pred             eeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence            2222    2345677666554 8999999999999996333334456678889999999999999876654 56666664

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=96.74  E-value=0.0014  Score=42.29  Aligned_cols=24  Identities=17%  Similarity=0.176  Sum_probs=21.0

Q ss_pred             HHHHHHHHhhCCCchhHHHHHhhh
Q psy14440         92 LITMLKLLRQYNLRGTEEQLKKEI  115 (711)
Q Consensus        92 ~~~v~~yl~k~g~~~~e~~l~~e~  115 (711)
                      ...|++||.++||.+|..+|++|+
T Consensus         4 n~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    4 NQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCcHHHHHHHHhcC
Confidence            347999999999999999999996

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.73  E-value=0.87  Score=46.71  Aligned_cols=184  Identities=10%  Similarity=0.055  Sum_probs=110.0

Q ss_pred             CceEEEEECCCCCEEEEEeCCC--eEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEE
Q psy14440        388 QQVTCAEISEDVSILAVGFSES--YIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRK  465 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg--~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~  465 (711)
                      .-...+.|..+|.++-+.+.-|  .|+.+++.++++.....-                    ...-.-.-+.-+.+.++.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l--------------------~~~~FgEGit~~~d~l~q  104 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL--------------------PPRYFGEGITILGDKLYQ  104 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE---------------------TTT--EEEEEEETTEEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC--------------------CccccceeEEEECCEEEE
Confidence            3456788878888877776655  688888876654321110                    000000001111223333


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecC--
Q psy14440        466 LSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGH--  543 (711)
Q Consensus       466 l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h--  543 (711)
                      +.|           .++...+||..+.+.+..+.- .+.=|.++  .+|..|+.......++++|..+.+..+.+.-.  
T Consensus       105 LTW-----------k~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~  170 (264)
T PF05096_consen  105 LTW-----------KEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDN  170 (264)
T ss_dssp             EES-----------SSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EET
T ss_pred             EEe-----------cCCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEEC
Confidence            333           568899999999999988863 45678887  35666777766788999999888777665432  


Q ss_pred             ---CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC------------C---CCCeEEEEEecCCCEEEEEe
Q psy14440        544 ---YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG------------H---KAPVYALSFSVCGRFLASAG  605 (711)
Q Consensus       544 ---~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~------------h---~~~I~~la~spdg~~Lasgs  605 (711)
                         -..++-+.|. +|...|-.=....|...|..+|+.+..+.-            +   ..-.+.||+.+.++.|...|
T Consensus       171 g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  171 GRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence               2245667776 665555555667788899999998877631            1   24588999998766655554


Q ss_pred             C
Q psy14440        606 G  606 (711)
Q Consensus       606 ~  606 (711)
                      .
T Consensus       250 K  250 (264)
T PF05096_consen  250 K  250 (264)
T ss_dssp             T
T ss_pred             C
Confidence            3

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.71  E-value=0.1  Score=45.97  Aligned_cols=101  Identities=16%  Similarity=0.160  Sum_probs=67.0

Q ss_pred             EEEEEEcC---CC-CEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE
Q psy14440        505 VWDIKFSP---HG-YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR  580 (711)
Q Consensus       505 V~~v~~sp---~g-~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~  580 (711)
                      |.++++..   +| +.|++||.|..||+|+-+  ..+..+. ....|++++-... ..++.+..+|+|-+|+- ..+ +.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~-~~R-lW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR-SQR-LW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC-cce-ee
Confidence            45555544   33 589999999999999866  3455554 3456777776654 67999999999999984 222 33


Q ss_pred             EeeCCCCCeEEEEEec-C--C-CEEEEEeCCCcEEE
Q psy14440        581 LLTGHKAPVYALSFSV-C--G-RFLASAGGDGNVHM  612 (711)
Q Consensus       581 ~~~~h~~~I~~la~sp-d--g-~~Lasgs~Dg~I~i  612 (711)
                      ..+. +..++++++.. +  | .-|++|-.+|.|-+
T Consensus        76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            3332 33366666543 2  2 36888888887753

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.68  E-value=0.58  Score=50.99  Aligned_cols=199  Identities=12%  Similarity=0.098  Sum_probs=99.2

Q ss_pred             CCCEEEEEe-CCCeEEEEECCC----CeEEEEEec---CC----CCEEEEEEcCCCCEEEEEE------CCCeEEEEECC
Q psy14440        471 DRSLLLSCS-QDNTIRLWSLLL----WRCLVVYKG---HG----HPVWDIKFSPHGYYFASAG------HDRMARLWATD  532 (711)
Q Consensus       471 dg~~L~s~s-~Dg~V~iwdl~t----~~~~~~~~~---h~----~~V~~v~~sp~g~~l~sgs------~Dg~i~lwd~~  532 (711)
                      +.++|+..+ ..+.|.|+|+.+    -+..+++..   +.    ..-..+-.-|+|.+++++-      .-|-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777776 577899999863    344455442   11    1222344457888888763      23467788888


Q ss_pred             CCceeEEeecCC---CCeeEEEEcCCCCEEEEEEc--------------------CCcEEEEECCCCcEEEEeeCCC--C
Q psy14440        533 SYHPLRLFVGHY---SDVDCVQFHPNSNYVATGSS--------------------DRTIRLWDCVTGSHVRLLTGHK--A  587 (711)
Q Consensus       533 ~~~~~~~~~~h~---~~V~~v~~sp~~~~latgs~--------------------Dg~I~iwD~~~~~~v~~~~~h~--~  587 (711)
                      +.+.........   .--..+-|+|..+.+++...                    ..++.+||+.+.+.++++.--.  .
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            777666655322   22456778888888888653                    3579999999999999887433  2


Q ss_pred             CeEEEEEecC--CCEEEEE-eCCCcEEEEEC-CCCe----EEEEeeC-----C------------CCCEEEEEEeCCCCE
Q psy14440        588 PVYALSFSVC--GRFLASA-GGDGNVHMWDL-SNGH----LLTLLTG-----H------------TDVVRALCFSRDGNI  642 (711)
Q Consensus       588 ~I~~la~spd--g~~Lasg-s~Dg~I~iwDl-~sg~----~i~~l~~-----h------------~~~V~sl~fspdg~~  642 (711)
                      ....|.|..+  ..+=++| .-.++|..|-- ..++    .+..+..     -            ..-|+.|..|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            3456666543  3333333 23445555533 3443    1222211     0            244799999999999


Q ss_pred             EEEEe-CCCcEEEEeCCCCCCccCcccc
Q psy14440        643 LASSG-QDCSVKLWDFAKLSDEVGTEEV  669 (711)
Q Consensus       643 Lasgs-~Dg~V~iWdl~~~~~~~~~~~~  669 (711)
                      |..++ .+|.||.||++.........++
T Consensus       326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv  353 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNPKLVGQV  353 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-EEEEEE
T ss_pred             EEEEcccCCcEEEEecCCCCCCcEEeEE
Confidence            87766 5899999999987765544333

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.67  E-value=0.43  Score=56.83  Aligned_cols=193  Identities=13%  Similarity=0.060  Sum_probs=118.5

Q ss_pred             CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC--------EEEEEEc----------------CCCCEEEEEECCCeEE
Q psy14440        472 RSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP--------VWDIKFS----------------PHGYYFASAGHDRMAR  527 (711)
Q Consensus       472 g~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~--------V~~v~~s----------------p~g~~l~sgs~Dg~i~  527 (711)
                      +..|+.|+.++.|...|..+++.+-.+......        ...+.+.                ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            456777788888888888888888777543211        1112221                1234788888999999


Q ss_pred             EEECCCCceeEEeecCCCCee-------------EEEEcC--CCCEEEEEEc----------CCcEEEEECCCCcEEEEe
Q psy14440        528 LWATDSYHPLRLFVGHYSDVD-------------CVQFHP--NSNYVATGSS----------DRTIRLWDCVTGSHVRLL  582 (711)
Q Consensus       528 lwd~~~~~~~~~~~~h~~~V~-------------~v~~sp--~~~~latgs~----------Dg~I~iwD~~~~~~v~~~  582 (711)
                      -.|.++++.+..|.. .+.|.             .+.-.|  .+..+++|+.          +|.|+-+|+++|+.+-.+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998876632 22111             111112  2346666643          688999999999988766


Q ss_pred             eCC---------CCC--------e-EEEEEecCCCEEEEEe------------------CCCcEEEEECCCCeEEEEeeC
Q psy14440        583 TGH---------KAP--------V-YALSFSVCGRFLASAG------------------GDGNVHMWDLSNGHLLTLLTG  626 (711)
Q Consensus       583 ~~h---------~~~--------I-~~la~spdg~~Lasgs------------------~Dg~I~iwDl~sg~~i~~l~~  626 (711)
                      ..-         .+.        + ...++++....++.+.                  ..++|.-.|.++|+..-.+..
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            421         000        1 2234444444443321                  135677788899998877654


Q ss_pred             CCCCEEE---------EEEeC-CCC---EEEEEeCCCcEEEEeCCCCCCccC
Q psy14440        627 HTDVVRA---------LCFSR-DGN---ILASSGQDCSVKLWDFAKLSDEVG  665 (711)
Q Consensus       627 h~~~V~s---------l~fsp-dg~---~Lasgs~Dg~V~iWdl~~~~~~~~  665 (711)
                      ....+++         +.+.. +|+   .++.++.+|.+.+.|-++.+....
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            2111111         22333 563   789999999999999988665443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.52  E-value=1.2  Score=45.66  Aligned_cols=277  Identities=14%  Similarity=0.117  Sum_probs=144.0

Q ss_pred             CCceEEEEEecCCCceEEEEECCCCCEEE-EEeCCCeEEEEeCCCCceeeeccCccc-cccccccCCc-EEEEEecCCCe
Q psy14440        375 LPSIACYTLLNARQQVTCAEISEDVSILA-VGFSESYIKLWSLVPQKLKAMKSSDQL-QDIEMECDDI-LVRIMDERNAE  451 (711)
Q Consensus       375 lps~~~~tl~~h~~~V~~l~fs~dg~~La-tG~~dg~I~vWdl~~~~~~~~~~~~~~-~~l~~~~~d~-~i~i~d~~~~~  451 (711)
                      +|+.|+-. ....--+.++....||++-+ +.+.+|.|..=-.-..+...+..++.. ..+++.-.-| ...++|.....
T Consensus        24 ~p~~~~s~-~~~qavfasaf~~~dgs~g~a~~~eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~  102 (366)
T COG3490          24 APSGSFSL-LRAQAVFASAFDARDGSFGAATLSEAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQ  102 (366)
T ss_pred             ccchhhhh-hcCcchheeeeeccCCceeEEEEccCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCc
Confidence            35544332 23333334444456777644 445566543222111122222222222 1233333333 34567766665


Q ss_pred             eEEEeecccCCE--EEEEEcCCCCEEEEEeCC-----CeEEEEECCC-CeEEEEEecCCCCEEEEEEcCCCCEEEEEECC
Q psy14440        452 TTRTLVGHEGPV--RKLSFSPDRSLLLSCSQD-----NTIRLWSLLL-WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD  523 (711)
Q Consensus       452 ~~~~l~~h~~~V--~~l~fspdg~~L~s~s~D-----g~V~iwdl~t-~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D  523 (711)
                      ...++..-++.-  -.=.||+||.+|+..-.|     |.|-|||.+. .+.+..+..|.-.-..+.|.+||+.++.+.  
T Consensus       103 ~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--  180 (366)
T COG3490         103 EPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--  180 (366)
T ss_pred             CcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--
Confidence            554443322211  123689999999876443     7799999864 355667788888888999999999888874  


Q ss_pred             CeEEEE--------------------ECCCCceeEEee----cCCCCeeEEEEcCCCCEEEEEEcCCc-----EEEEECC
Q psy14440        524 RMARLW--------------------ATDSYHPLRLFV----GHYSDVDCVQFHPNSNYVATGSSDRT-----IRLWDCV  574 (711)
Q Consensus       524 g~i~lw--------------------d~~~~~~~~~~~----~h~~~V~~v~~sp~~~~latgs~Dg~-----I~iwD~~  574 (711)
                      |-|..-                    |..++..+....    .+.-.|..++..+||..++.+-..|.     --+=-..
T Consensus       181 GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~  260 (366)
T COG3490         181 GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFR  260 (366)
T ss_pred             CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeecc
Confidence            333332                    322333222111    23345666777666655444332221     0000112


Q ss_pred             CCcEEEEeeC-------CCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEE
Q psy14440        575 TGSHVRLLTG-------HKAPVYALSFSVCGRFLASAGG-DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASS  646 (711)
Q Consensus       575 ~~~~v~~~~~-------h~~~I~~la~spdg~~Lasgs~-Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasg  646 (711)
                      .|+.+..+.-       -...|-+|+.+.+..+++..+- .+...+||..+|..+..-.--  .+..++-  ...-++..
T Consensus       261 ~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva~--~~~gf~vs  336 (366)
T COG3490         261 KGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVAA--AKGGFAVS  336 (366)
T ss_pred             CCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--cccccee--ccCceEEe
Confidence            2333322221       1235677888776666665554 456789999999987654321  1222332  23335555


Q ss_pred             eCCCcEEEEeCC
Q psy14440        647 GQDCSVKLWDFA  658 (711)
Q Consensus       647 s~Dg~V~iWdl~  658 (711)
                      +.+|.+.++.-.
T Consensus       337 sg~G~~~~~s~~  348 (366)
T COG3490         337 SGQGRIIFYSRA  348 (366)
T ss_pred             cCCceEEecccc
Confidence            668888887433

>KOG4499|consensus

Probab=96.51  E-value=0.7  Score=45.97  Aligned_cols=135  Identities=17%  Similarity=0.268  Sum_probs=85.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEECC---------CeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEE-EEEEcCCcEEEE
Q psy14440        502 GHPVWDIKFSPHGYYFASAGHD---------RMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYV-ATGSSDRTIRLW  571 (711)
Q Consensus       502 ~~~V~~v~~sp~g~~l~sgs~D---------g~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l-atgs~Dg~I~iw  571 (711)
                      .....+-..+|+|+|++-.-.|         |.++.|-...  .+..+.+.-.--+.++|+.+.+.+ ++-+.+-+|.-|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            3456677789999985543332         3444444332  122222223334578888766554 445567778778


Q ss_pred             E--CCCCcE-----EEEeeCC----CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeC
Q psy14440        572 D--CVTGSH-----VRLLTGH----KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSR  638 (711)
Q Consensus       572 D--~~~~~~-----v~~~~~h----~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fsp  638 (711)
                      |  ..+|..     +..++..    .-.-..+++..+|++.+++-..|+|..+|..+|+.+.+++-....|+++||--
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            7  556532     2222210    11123345566788888888889999999999999999998899999999964

>PRK10115 protease 2; Provisional

Probab=96.50  E-value=0.9  Score=53.89  Aligned_cols=193  Identities=10%  Similarity=0.083  Sum_probs=106.0

Q ss_pred             CEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC------CeEEEEE
Q psy14440        462 PVRKLSFSPDRSLLLSCSQ-----DNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD------RMARLWA  530 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~-----Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D------g~i~lwd  530 (711)
                      .+..+.|||||++|+.+..     ..+|++.|+.++..+...-....  ..++|+++++.|+.+..+      ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4667889999998876533     23588899988764322111111  459999998866665432      3677788


Q ss_pred             CCCC--ceeEEeecCCCCee-EEEEcCCCCEEEEEEc---CCcEEEEECC--CCcEEEEeeCCCCCeEEEEEecCCCEEE
Q psy14440        531 TDSY--HPLRLFVGHYSDVD-CVQFHPNSNYVATGSS---DRTIRLWDCV--TGSHVRLLTGHKAPVYALSFSVCGRFLA  602 (711)
Q Consensus       531 ~~~~--~~~~~~~~h~~~V~-~v~~sp~~~~latgs~---Dg~I~iwD~~--~~~~v~~~~~h~~~I~~la~spdg~~La  602 (711)
                      +.++  +....+........ .+..+.++++++..+.   ++.+.+|+..  ++.....+....+....+. +..+.+++
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~  284 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL  284 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence            8877  44455554334343 2233447887766553   4578888853  3442222222222222222 33333333


Q ss_pred             EEeC---CCcEEEEECCCCeEEEEeeCC-C-CCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        603 SAGG---DGNVHMWDLSNGHLLTLLTGH-T-DVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       603 sgs~---Dg~I~iwDl~sg~~i~~l~~h-~-~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      ....   ...|...++.+......+..+ . ..|..+.++ .+.++++...+|.-++|-+.
T Consensus       285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            3322   224555555521222333344 3 368888887 34566666677776665543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.46  E-value=1.1  Score=48.14  Aligned_cols=238  Identities=17%  Similarity=0.163  Sum_probs=118.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEE
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSF  468 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~f  468 (711)
                      .-++|+|.|||+++++ ...|.|++++..+.....+....                         ............+++
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~-------------------------~v~~~~~~gllgia~   56 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLP-------------------------EVFADGERGLLGIAF   56 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-T-------------------------TTBTSTTBSEEEEEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccc-------------------------cccccccCCccccee
Confidence            3578999999988775 55999999984322101110000                         001223456778888


Q ss_pred             cCC---CCEEEEEeC-C--------CeEEEEECCCC-------eEEE-EEec---CCCCEEEEEEcCCCCEEEEEECCC-
Q psy14440        469 SPD---RSLLLSCSQ-D--------NTIRLWSLLLW-------RCLV-VYKG---HGHPVWDIKFSPHGYYFASAGHDR-  524 (711)
Q Consensus       469 spd---g~~L~s~s~-D--------g~V~iwdl~t~-------~~~~-~~~~---h~~~V~~v~~sp~g~~l~sgs~Dg-  524 (711)
                      +|+   +.+|+.... .        ..|.-|.+...       +.+. .+..   ..+....|.|.|+|.++++.+..+ 
T Consensus        57 ~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   57 HPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             -TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred             ccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence            873   233333322 1        12433433322       1111 2222   345567799999997666665432 


Q ss_pred             ------------eEEEEECCCCc------------eeEEeecCCCCeeEEEEcCC-CCEEEEE-EcCCcEEEEECCCCc-
Q psy14440        525 ------------MARLWATDSYH------------PLRLFVGHYSDVDCVQFHPN-SNYVATG-SSDRTIRLWDCVTGS-  577 (711)
Q Consensus       525 ------------~i~lwd~~~~~------------~~~~~~~h~~~V~~v~~sp~-~~~latg-s~Dg~I~iwD~~~~~-  577 (711)
                                  .|.-.+.+..-            ...++..-......++|+|. |+++++- +.++.=.|.-+..|. 
T Consensus       137 ~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~n  216 (331)
T PF07995_consen  137 DDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGN  216 (331)
T ss_dssp             GGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B
T ss_pred             cccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCc
Confidence                        23323322110            01122211223457899998 5554432 223222232222111 


Q ss_pred             ----------------------------EEEEeeCCCCCeEEEEEec-------CCCEEEEEeCCCcEEEEECCCCeEEE
Q psy14440        578 ----------------------------HVRLLTGHKAPVYALSFSV-------CGRFLASAGGDGNVHMWDLSNGHLLT  622 (711)
Q Consensus       578 ----------------------------~v~~~~~h~~~I~~la~sp-------dg~~Lasgs~Dg~I~iwDl~sg~~i~  622 (711)
                                                  .+..+. +...+..+.|-.       .|.++++.-..+.|...++..+..+.
T Consensus       217 YGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~  295 (331)
T PF07995_consen  217 YGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVT  295 (331)
T ss_dssp             --TTTBSSSCSTTSS-ECTGSS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE
T ss_pred             CCCCCCcCCCCCCCCccccccCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCcc
Confidence                                        122233 335566777753       35567666666788888887553322


Q ss_pred             ---E-eeCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q psy14440        623 ---L-LTGHTDVVRALCFSRDGNILASSGQDCSVK  653 (711)
Q Consensus       623 ---~-l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~  653 (711)
                         . +......+.++++.+||.++++...+|.|.
T Consensus       296 ~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  296 EEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             ceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence               1 223445899999999999999888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.45  E-value=0.64  Score=47.96  Aligned_cols=144  Identities=14%  Similarity=0.129  Sum_probs=90.2

Q ss_pred             CEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEE-CCCCce-
Q psy14440        462 PVRKLSFSPDRSLLLSCS---QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA-TDSYHP-  536 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s---~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd-~~~~~~-  536 (711)
                      .+.+.+++++++.++...   ....++++...  ....... ....+..-.|++++...+....+...+++. ...+.. 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999999877665   23345555543  2222221 233677788999987666666666677773 233322 


Q ss_pred             -eEEeecCC-CCeeEEEEcCCCCEEEEEE---cCCcEEEEECC---CC------cEEEEeeCCCCCeEEEEEecCCCEEE
Q psy14440        537 -LRLFVGHY-SDVDCVQFHPNSNYVATGS---SDRTIRLWDCV---TG------SHVRLLTGHKAPVYALSFSVCGRFLA  602 (711)
Q Consensus       537 -~~~~~~h~-~~V~~v~~sp~~~~latgs---~Dg~I~iwD~~---~~------~~v~~~~~h~~~I~~la~spdg~~La  602 (711)
                       +..-.... ..|..+.++|||..+|...   .++.|.+--+.   .+      ..+.........++.++|..++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence             22211112 2899999999999988766   34667665443   22      11222223456889999999998887


Q ss_pred             EEeCCC
Q psy14440        603 SAGGDG  608 (711)
Q Consensus       603 sgs~Dg  608 (711)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            776544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK13684 Ycf48-like protein; Provisional

Probab=96.45  E-value=1.7  Score=46.76  Aligned_cols=149  Identities=15%  Similarity=0.122  Sum_probs=88.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEECCCeEEE-EECCCCceeE-EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE
Q psy14440        502 GHPVWDIKFSPHGYYFASAGHDRMARL-WATDSYHPLR-LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV  579 (711)
Q Consensus       502 ~~~V~~v~~sp~g~~l~sgs~Dg~i~l-wd~~~~~~~~-~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v  579 (711)
                      ...+.++.+.+++.+++++. .|.+.. ++ +.++... ....-...++++.+.++++.+++|. .|.+++=....|..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCcc
Confidence            45688999999886665554 554443 22 2222222 1223456789999999988877764 576654334455433


Q ss_pred             EEeeC----CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC---CCCCEEEEEEeCCCCEEEEEeCCCcE
Q psy14440        580 RLLTG----HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG---HTDVVRALCFSRDGNILASSGQDCSV  652 (711)
Q Consensus       580 ~~~~~----h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~---h~~~V~sl~fspdg~~Lasgs~Dg~V  652 (711)
                      .....    ....+.++++.++++.+++| .+|.|. .....|+.-.....   -....+.+.|..+++.++ .|..|.|
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i  325 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL  325 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence            32221    12357889999888765554 567554 44455554444332   223578888887776655 5567888


Q ss_pred             EEEe
Q psy14440        653 KLWD  656 (711)
Q Consensus       653 ~iWd  656 (711)
                      -.|+
T Consensus       326 l~~~  329 (334)
T PRK13684        326 LRYV  329 (334)
T ss_pred             EEec
Confidence            7775

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.36  E-value=1.7  Score=45.84  Aligned_cols=184  Identities=15%  Similarity=0.174  Sum_probs=86.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEE
Q psy14440        463 VRKLSFSPDRSLLLSCSQDNTIRLWSLLL---WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL  539 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s~Dg~V~iwdl~t---~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~  539 (711)
                      .+++.|..+ ..++ ++..+ +.+...+.   ++.+..-..-......+....++ ....++..|.|+ ...+.++.-..
T Consensus        64 l~~I~f~~~-~g~i-vG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy-~T~DgG~tW~~  138 (302)
T PF14870_consen   64 LNSISFDGN-EGWI-VGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIY-RTTDGGKTWQA  138 (302)
T ss_dssp             EEEEEEETT-EEEE-EEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EE-EESSTTSSEEE
T ss_pred             EEEEEecCC-ceEE-EcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEE-EeCCCCCCeeE
Confidence            567777543 3334 44455 44444433   33332111112223334333333 333344444432 23334443322


Q ss_pred             -eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE-CCC
Q psy14440        540 -FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD-LSN  617 (711)
Q Consensus       540 -~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwD-l~s  617 (711)
                       ...-.+.+..+..+++|+++++++......-||--...-...-..-...|.++.|++++.+.+++ ..|.|++=+ ...
T Consensus       139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD  217 (302)
T ss_dssp             EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred             cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC
Confidence             23445678888889999999998766666678743221122222345789999999998876655 778888877 222


Q ss_pred             CeEEEE----eeCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q psy14440        618 GHLLTL----LTGHTDVVRALCFSRDGNILASSGQDCSVK  653 (711)
Q Consensus       618 g~~i~~----l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~  653 (711)
                      ++....    +....-.+.+++|.+++...++|+ .|++.
T Consensus       218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~  256 (302)
T PF14870_consen  218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL  256 (302)
T ss_dssp             EEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE
T ss_pred             ccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE
Confidence            222221    111223488999998887777665 55553

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.34  E-value=1.4  Score=48.53  Aligned_cols=84  Identities=18%  Similarity=0.281  Sum_probs=60.3

Q ss_pred             CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEE-EEEecC-C----------------CEE-EE
Q psy14440        543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYA-LSFSVC-G----------------RFL-AS  603 (711)
Q Consensus       543 h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~-la~spd-g----------------~~L-as  603 (711)
                      ....+.+++.+|++++.|+...=|.|.++|+.++..++.++|..+.-.. +..... .                .+| +-
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            4455889999999999888877899999999999999998886553211 111111 1                122 23


Q ss_pred             EeCCCcEEEEECCCCeEEEEeeC
Q psy14440        604 AGGDGNVHMWDLSNGHLLTLLTG  626 (711)
Q Consensus       604 gs~Dg~I~iwDl~sg~~i~~l~~  626 (711)
                      +-.-|.|.||++++|..+..+..
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEEEe
Confidence            45678999999999988877653

>PHA03098 kelch-like protein; Provisional

Probab=96.33  E-value=0.15  Score=58.63  Aligned_cols=181  Identities=10%  Similarity=0.039  Sum_probs=87.1

Q ss_pred             CCCEEEEEeCCC------eEEEEECCCCeEEEE--EecCCCCEEEEEEcCCCCEEEEEECC-----CeEEEEECCCCcee
Q psy14440        471 DRSLLLSCSQDN------TIRLWSLLLWRCLVV--YKGHGHPVWDIKFSPHGYYFASAGHD-----RMARLWATDSYHPL  537 (711)
Q Consensus       471 dg~~L~s~s~Dg------~V~iwdl~t~~~~~~--~~~h~~~V~~v~~sp~g~~l~sgs~D-----g~i~lwd~~~~~~~  537 (711)
                      ++..++.||.++      .+..||..+.+-...  +.........+.+  +++.++.||.+     ..+..||..+.+=.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            445556665432      467788765443221  1111111122222  56777788765     34667887654311


Q ss_pred             --EEeecCCCCeeEEEEcCCCCEEEEEEcC------CcEEEEECCCCcEEEE--eeCCCCCeEEEEEecCCCEEEEEeCC
Q psy14440        538 --RLFVGHYSDVDCVQFHPNSNYVATGSSD------RTIRLWDCVTGSHVRL--LTGHKAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       538 --~~~~~h~~~V~~v~~sp~~~~latgs~D------g~I~iwD~~~~~~v~~--~~~h~~~I~~la~spdg~~Lasgs~D  607 (711)
                        ..+...... .+++. -+++.++.|+.+      +.+..||..+++-...  +....... + +..-+++..+.||.+
T Consensus       372 ~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~  447 (534)
T PHA03098        372 EEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-C-AIYHDGKIYVIGGIS  447 (534)
T ss_pred             eCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-e-EEEECCEEEEECCcc
Confidence              111111111 12222 256666666632      4588899876543221  11111111 1 223356666777643


Q ss_pred             C--------cEEEEECCCCeEEEE--eeCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEeCCC
Q psy14440        608 G--------NVHMWDLSNGHLLTL--LTGHTDVVRALCFSRDGNILASSGQD-----CSVKLWDFAK  659 (711)
Q Consensus       608 g--------~I~iwDl~sg~~i~~--l~~h~~~V~sl~fspdg~~Lasgs~D-----g~V~iWdl~~  659 (711)
                      +        .+.+||..+++-...  +.........+.  -++++++.||.+     +.|.+||..+
T Consensus       448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence            2        388999887654322  211111111222  267777888765     3677777654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.32  E-value=0.84  Score=54.42  Aligned_cols=153  Identities=10%  Similarity=0.074  Sum_probs=95.6

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEE-------------EEEEcC--CCCEEEEEEC----------CCe
Q psy14440        471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVW-------------DIKFSP--HGYYFASAGH----------DRM  525 (711)
Q Consensus       471 dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~-------------~v~~sp--~g~~l~sgs~----------Dg~  525 (711)
                      ++..++.++.|+.|...|.++++.+..+.. ++.|.             .+.-.|  .+..+++|+.          +|.
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~  337 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV  337 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence            355788888999999999999998877642 22220             111112  2345666643          688


Q ss_pred             EEEEECCCCceeEEeecC---------CC--------Ce-eEEEEcCCCCEEEEEE------------------cCCcEE
Q psy14440        526 ARLWATDSYHPLRLFVGH---------YS--------DV-DCVQFHPNSNYVATGS------------------SDRTIR  569 (711)
Q Consensus       526 i~lwd~~~~~~~~~~~~h---------~~--------~V-~~v~~sp~~~~latgs------------------~Dg~I~  569 (711)
                      |+-+|.++++.+-.+..-         .+        .+ ..+++.+....++.+.                  ..+.|.
T Consensus       338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv  417 (764)
T TIGR03074       338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV  417 (764)
T ss_pred             EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence            999999999887765421         00        01 2344555444444422                  124566


Q ss_pred             EEECCCCcEEEEeeC-CC-C-------CeEEEEEec-CCC---EEEEEeCCCcEEEEECCCCeEEEEe
Q psy14440        570 LWDCVTGSHVRLLTG-HK-A-------PVYALSFSV-CGR---FLASAGGDGNVHMWDLSNGHLLTLL  624 (711)
Q Consensus       570 iwD~~~~~~v~~~~~-h~-~-------~I~~la~sp-dg~---~Lasgs~Dg~I~iwDl~sg~~i~~l  624 (711)
                      -.|.++|+..-.+.. |. .       ...-+.+.. +|+   .++.++.+|.++++|-++|+.+...
T Consensus       418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            778889988776654 21 1       111122333 564   7899999999999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.31  E-value=0.29  Score=50.50  Aligned_cols=145  Identities=16%  Similarity=0.164  Sum_probs=91.4

Q ss_pred             CEEEEEEcCCCCEEEEEE---CCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEE-CCCCcEE
Q psy14440        504 PVWDIKFSPHGYYFASAG---HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWD-CVTGSHV  579 (711)
Q Consensus       504 ~V~~v~~sp~g~~l~sgs---~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD-~~~~~~v  579 (711)
                      .+.+.++++++..++...   ....++++...  ....... ....+..-.|++++...+....+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            678899999998777665   33345555433  3333322 223788889999987777767677777773 3334322


Q ss_pred             E-EeeCC--CCCeEEEEEecCCCEEEEEe---CCCcEEEEECC---CC--e----EEEEeeCCCCCEEEEEEeCCCCEEE
Q psy14440        580 R-LLTGH--KAPVYALSFSVCGRFLASAG---GDGNVHMWDLS---NG--H----LLTLLTGHTDVVRALCFSRDGNILA  644 (711)
Q Consensus       580 ~-~~~~h--~~~I~~la~spdg~~Lasgs---~Dg~I~iwDl~---sg--~----~i~~l~~h~~~V~sl~fspdg~~La  644 (711)
                      . .....  .+.|+.+.+||||..+|...   .++.|.|--+.   .|  .    .+.........+.+++|..++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            2 12211  12899999999999887655   35677776543   23  1    1122223346789999999998877


Q ss_pred             EEeCCCc
Q psy14440        645 SSGQDCS  651 (711)
Q Consensus       645 sgs~Dg~  651 (711)
                      .+...+.
T Consensus       182 ~~~~~~~  188 (253)
T PF10647_consen  182 LGRSAGG  188 (253)
T ss_pred             EeCCCCC
Confidence            7665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG3630|consensus

Probab=96.29  E-value=0.045  Score=64.70  Aligned_cols=142  Identities=12%  Similarity=0.026  Sum_probs=92.2

Q ss_pred             CEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCeEEE-----EEe------cCCCCEEEEEEcCCC-CEEEEEECCCeEE
Q psy14440        462 PVRKLSFSPDRSLLLSC--SQDNTIRLWSLLLWRCLV-----VYK------GHGHPVWDIKFSPHG-YYFASAGHDRMAR  527 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~--s~Dg~V~iwdl~t~~~~~-----~~~------~h~~~V~~v~~sp~g-~~l~sgs~Dg~i~  527 (711)
                      +|..+...+|+...++.  +.+-.|..||+++...-.     -+.      .......++.|+|.- ..++++..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45555666676544433  334468899986533211     111      123446678898843 3567778899999


Q ss_pred             EEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC----CCCCeEEEEEecCCCEEEE
Q psy14440        528 LWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG----HKAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       528 lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~----h~~~I~~la~spdg~~Las  603 (711)
                      +..+........-......++|++|+|.|+.++.|-..|++.-|-- +++..+.+.+    ....|.||+|-....++++
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            8877543322221234567899999999999999999999988864 3444444432    2468999999887777765


Q ss_pred             E
Q psy14440        604 A  604 (711)
Q Consensus       604 g  604 (711)
                      -
T Consensus       261 y  261 (1405)
T KOG3630|consen  261 Y  261 (1405)
T ss_pred             e
Confidence            4

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.29  E-value=0.27  Score=50.52  Aligned_cols=161  Identities=14%  Similarity=0.158  Sum_probs=109.8

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeec-CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc
Q psy14440        499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG-HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS  577 (711)
Q Consensus       499 ~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~  577 (711)
                      .+-...|.++.|+|+.+.+++........+|=..+|+.++.+.. ...+...|.+..++.++++--.++.+.++.+..+.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            34455699999999999888888888888888888888887652 24566788888888888877778888888776553


Q ss_pred             EEEEee---------CC-CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-E--EEEeeCCC-------CCEEEEEEe
Q psy14440        578 HVRLLT---------GH-KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGH-L--LTLLTGHT-------DVVRALCFS  637 (711)
Q Consensus       578 ~v~~~~---------~h-~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~-~--i~~l~~h~-------~~V~sl~fs  637 (711)
                      .+..+.         .+ +.....++|++.++.|+.+-+-.=+.||.+..+. .  +.....++       ..|.++.|+
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            222111         12 5677889999999999988887777777654322 1  11111221       346777887


Q ss_pred             CC-CCEEEEEeCCCcEEEEeCCC
Q psy14440        638 RD-GNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       638 pd-g~~Lasgs~Dg~V~iWdl~~  659 (711)
                      +. +.+|+-+.+++.|.-.|...
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecCC
Confidence            63 45666666666666655543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.23  E-value=1.9  Score=47.07  Aligned_cols=103  Identities=14%  Similarity=0.188  Sum_probs=58.6

Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CeEEE-EEec----CCCCEEEEEEcCCCCEEEEEECC----
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL-------WRCLV-VYKG----HGHPVWDIKFSPHGYYFASAGHD----  523 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t-------~~~~~-~~~~----h~~~V~~v~~sp~g~~l~sgs~D----  523 (711)
                      .....+++|.++|  |++++.....++.|...       .+.+. .+..    +......++|.|+|.+.++.+..    
T Consensus        71 l~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~  148 (367)
T TIGR02604        71 LSMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK  148 (367)
T ss_pred             CCCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence            3456889998888  44444444333434421       11221 1222    23457789999999866654421    


Q ss_pred             ---------------CeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcC
Q psy14440        524 ---------------RMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD  565 (711)
Q Consensus       524 ---------------g~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D  565 (711)
                                     |.|.-++.++++ +..+.........++|+++|+++++-..+
T Consensus       149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       149 VTRPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             eccCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEccCC
Confidence                           445555665544 33343334446789999999887765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.12  E-value=2.9  Score=46.14  Aligned_cols=182  Identities=13%  Similarity=0.095  Sum_probs=102.6

Q ss_pred             CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC------------------
Q psy14440        472 RSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS------------------  533 (711)
Q Consensus       472 g~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~------------------  533 (711)
                      ..+|++-|.||++.+|+-+.....+.+.+ .----.+.|.+....|++++.+..+..|....                  
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~  223 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDI  223 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccc
Confidence            35788889999999999776554444433 21223477888888999999998988885421                  


Q ss_pred             --Cc---eeEEeec--CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEE-Ee----cCC---
Q psy14440        534 --YH---PLRLFVG--HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALS-FS----VCG---  598 (711)
Q Consensus       534 --~~---~~~~~~~--h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la-~s----pdg---  598 (711)
                        ++   +-.++..  .--+|..+.++.+...+++-+ .+++.+.+- +|.. +..+-......|++ |.    .++   
T Consensus       224 ~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~G~l-~~~krLd~~p~~~~~Y~~~~~~~~~~~  300 (418)
T PF14727_consen  224 SSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-NGSL-RFQKRLDYNPSCFCPYRVPWYNEPSTR  300 (418)
T ss_pred             cccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-CCeE-EEEEecCCceeeEEEEEeecccCCCCc
Confidence              00   0111111  111233444443333444433 456666664 4533 33222233223322 21    122   


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEE---EeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        599 RFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALC---FSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       599 ~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~---fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      ..++.++.++++.||.  ..+++..-+....+| +|.   |..-...|++-+.+|.+.+-=+.+-
T Consensus       301 ~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd  362 (418)
T PF14727_consen  301 LNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTD  362 (418)
T ss_pred             eEEEEEecCCeEEEEe--CCeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence            2478888999999996  344444443333333 333   3333558888999999999887663

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.08  E-value=0.31  Score=54.47  Aligned_cols=150  Identities=15%  Similarity=0.198  Sum_probs=92.0

Q ss_pred             cCCEEEEEEcCCCC-EEEEEe--CCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCC----CEEEEEECCCeEEEEECC
Q psy14440        460 EGPVRKLSFSPDRS-LLLSCS--QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG----YYFASAGHDRMARLWATD  532 (711)
Q Consensus       460 ~~~V~~l~fspdg~-~L~s~s--~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g----~~l~sgs~Dg~i~lwd~~  532 (711)
                      -.+|.+++|. ||+ .+++.-  .+|.+++=|-   ..+    |.-..|..+.|.|-+    ..+++..+.+.|.+|-+-
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            3578999997 555 444442  2344443332   222    234468889999843    356666788999999764


Q ss_pred             -----CCceeEEeecCC-C--C--eeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-EEEEeeCCCCCeEEEEEecCCCEE
Q psy14440        533 -----SYHPLRLFVGHY-S--D--VDCVQFHPNSNYVATGSSDRTIRLWDCVTGS-HVRLLTGHKAPVYALSFSVCGRFL  601 (711)
Q Consensus       533 -----~~~~~~~~~~h~-~--~--V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~-~v~~~~~h~~~I~~la~spdg~~L  601 (711)
                           ..+.+..-..+- .  +  -..+.|||....|++-.....=.+++++... .++.-....+-|.|.+|..||+.|
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence                 223222211111 1  1  2357899999888877765554566766433 333333467889999999999988


Q ss_pred             EEEeCC-CcEEEEECCC
Q psy14440        602 ASAGGD-GNVHMWDLSN  617 (711)
Q Consensus       602 asgs~D-g~I~iwDl~s  617 (711)
                      +++-.. =.-+|||-..
T Consensus       171 VVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEEeCCeEEEEEecCch
Confidence            776433 3567898543

>PHA02713 hypothetical protein; Provisional

Probab=96.07  E-value=0.27  Score=56.85  Aligned_cols=152  Identities=10%  Similarity=0.006  Sum_probs=80.7

Q ss_pred             CCCEEEEEeCCC-----eEEEEECCCC--eEEEEEecCCCCEEEEEEcCCCCEEEEEECCC-------------------
Q psy14440        471 DRSLLLSCSQDN-----TIRLWSLLLW--RCLVVYKGHGHPVWDIKFSPHGYYFASAGHDR-------------------  524 (711)
Q Consensus       471 dg~~L~s~s~Dg-----~V~iwdl~t~--~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg-------------------  524 (711)
                      +|+..+.||.++     +|..||..+.  ..+..+.........+.+  +|+..+.||.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence            677777777654     4788887653  332222211111112222  577777777653                   


Q ss_pred             ----eEEEEECCCCc--eeEEeecCCCCeeEEEEcCCCCEEEEEEcC------CcEEEEECCC-Cc--EEEEeeCCCCCe
Q psy14440        525 ----MARLWATDSYH--PLRLFVGHYSDVDCVQFHPNSNYVATGSSD------RTIRLWDCVT-GS--HVRLLTGHKAPV  589 (711)
Q Consensus       525 ----~i~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~latgs~D------g~I~iwD~~~-~~--~v~~~~~h~~~I  589 (711)
                          .+..||..+.+  .+..+....... +++.. +++..+.|+.+      ..|..||..+ .+  .+..+.......
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~  506 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL  506 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccC-cEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence                46677776542  222221111111 22222 56666677654      2467899876 33  333333333333


Q ss_pred             EEEEEecCCCEEEEEeCCC--cEEEEECCCCeEEEEeeCCC
Q psy14440        590 YALSFSVCGRFLASAGGDG--NVHMWDLSNGHLLTLLTGHT  628 (711)
Q Consensus       590 ~~la~spdg~~Lasgs~Dg--~I~iwDl~sg~~i~~l~~h~  628 (711)
                      ..+++  +|+..++||.+|  .+..||..+.+-...-..|.
T Consensus       507 ~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~  545 (557)
T PHA02713        507 HTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS  545 (557)
T ss_pred             eeEEE--CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence            33333  688888999888  77888887766544444443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.05  E-value=1.7  Score=45.16  Aligned_cols=197  Identities=17%  Similarity=0.187  Sum_probs=114.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECC------CC-eEEEEEec-----CCCCEEEEEEcCCCC------------EEE
Q psy14440        463 VRKLSFSPDRSLLLSCSQDNTIRLWSLL------LW-RCLVVYKG-----HGHPVWDIKFSPHGY------------YFA  518 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s~Dg~V~iwdl~------t~-~~~~~~~~-----h~~~V~~v~~sp~g~------------~l~  518 (711)
                      -+.|+|+|.+.+-++....+...+||..      .. ..+.++..     .....+.+.|+....            .|+
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4789999999888888788899999986      12 22333332     123566777764322            378


Q ss_pred             EEECCCeEEEEECCCCce-----eEEeec-CCCC-eeEEEEcC--CCCEEEEE-EcCCcEEEEECCCCcEEEE---eeCC
Q psy14440        519 SAGHDRMARLWATDSYHP-----LRLFVG-HYSD-VDCVQFHP--NSNYVATG-SSDRTIRLWDCVTGSHVRL---LTGH  585 (711)
Q Consensus       519 sgs~Dg~i~lwd~~~~~~-----~~~~~~-h~~~-V~~v~~sp--~~~~latg-s~Dg~I~iwD~~~~~~v~~---~~~h  585 (711)
                      .+++||+|.-|...-...     ...+.. .... ...+++..  .+++|..+ -..++|.|||-.-.+ +..   |...
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~-~~~~g~F~DP  183 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP-PPLPGSFIDP  183 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc-ccCCCCccCC
Confidence            889999999998532211     122211 1122 23455543  24555444 357889999854322 211   1110


Q ss_pred             C-----CC--eEE---------EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee--CCCCCEEEEEEeC------CCC
Q psy14440        586 K-----AP--VYA---------LSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLT--GHTDVVRALCFSR------DGN  641 (711)
Q Consensus       586 ~-----~~--I~~---------la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~--~h~~~V~sl~fsp------dg~  641 (711)
                      .     .+  |..         ..-.++++.=+.|-.-|.|-+||+ +|+.++++.  +.-..-+.|+..|      .|.
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~  262 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA  262 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence            0     00  111         111122222223344578999996 688888874  3335667888766      466


Q ss_pred             EEEEEeCCCcEEEEeCCCCC
Q psy14440        642 ILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       642 ~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      +|+---.||+|..||..+..
T Consensus       263 lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       263 LLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             eEEeecCCceeEEecCCCCc
Confidence            77776679999999987543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1897|consensus

Probab=95.90  E-value=5.5  Score=47.39  Aligned_cols=172  Identities=13%  Similarity=0.173  Sum_probs=115.7

Q ss_pred             EEEEECCCCeEEEEEecC----CCCEEEEEEcCC-CCEEEEEEC----------CCeEEEEECCCCceeEEeecC--CCC
Q psy14440        484 IRLWSLLLWRCLVVYKGH----GHPVWDIKFSPH-GYYFASAGH----------DRMARLWATDSYHPLRLFVGH--YSD  546 (711)
Q Consensus       484 V~iwdl~t~~~~~~~~~h----~~~V~~v~~sp~-g~~l~sgs~----------Dg~i~lwd~~~~~~~~~~~~h--~~~  546 (711)
                      ++++|-.+.+.+...+-.    ...|.++.|..+ +.++++|+.          .|.|.++.......++....+  .+.
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga  831 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA  831 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence            777777777766554321    123555568877 678888862          477888877765555544332  233


Q ss_pred             eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC--CCeEEEEe
Q psy14440        547 VDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS--NGHLLTLL  624 (711)
Q Consensus       547 V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~--sg~~i~~l  624 (711)
                      +.++..- ||+++|.-  ...|++|+..+++.++.-..|...+..+...-.|..+++|+.-++|.+.-.+  .|..+..-
T Consensus       832 v~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evA  908 (1096)
T KOG1897|consen  832 VYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVA  908 (1096)
T ss_pred             eeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEee
Confidence            3333322 67776654  5689999999998888888899999999999999999999988877765443  44454433


Q ss_pred             e-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        625 T-GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       625 ~-~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      + .+..+.+++.+-.+. .++.+..+|.+.+-...+
T Consensus       909 rD~~p~Wmtaveil~~d-~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  909 RDYNPNWMTAVEILDDD-TYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             hhhCccceeeEEEecCc-eEEeecccccEEEEEecC
Confidence            3 456677787776554 445566788887776654

>KOG4441|consensus

Probab=95.89  E-value=0.4  Score=55.47  Aligned_cols=180  Identities=14%  Similarity=0.223  Sum_probs=96.3

Q ss_pred             CCCEEEEEeCC------CeEEEEECCCCe--EEEEEecCCCCEEEEEEcCCCCEEEEEECCCe-----EEEEECCCCc--
Q psy14440        471 DRSLLLSCSQD------NTIRLWSLLLWR--CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRM-----ARLWATDSYH--  535 (711)
Q Consensus       471 dg~~L~s~s~D------g~V~iwdl~t~~--~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~-----i~lwd~~~~~--  535 (711)
                      ++...++||.|      .++..||..+.+  .+..+...........+  +|...++||.||.     +..||..+.+  
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~  409 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT  409 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence            45677888888      346777775543  32222221111111211  5788999998874     6677776542  


Q ss_pred             eeEEeecCCCCeeEEEEcCCCCEEEEEEcCC------cEEEEECCCCcEEEE--eeCCCCCeEEEEEecCCCEEEEEeCC
Q psy14440        536 PLRLFVGHYSDVDCVQFHPNSNYVATGSSDR------TIRLWDCVTGSHVRL--LTGHKAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       536 ~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg------~I~iwD~~~~~~v~~--~~~h~~~I~~la~spdg~~Lasgs~D  607 (711)
                      .+..+.......-.+.+  +|...++|+.++      +|..||..+++-...  +........ + ..-++...+.||.|
T Consensus       410 ~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~-a~~~~~iYvvGG~~  485 (571)
T KOG4441|consen  410 PVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-V-AVLNGKIYVVGGFD  485 (571)
T ss_pred             ccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-E-EEECCEEEEECCcc
Confidence            22211111122222222  677888887554      467788776643222  221122222 2 22357788888877


Q ss_pred             C-----cEEEEECCCCeE--EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCc-----EEEEeCC
Q psy14440        608 G-----NVHMWDLSNGHL--LTLLTGHTDVVRALCFSRDGNILASSGQDCS-----VKLWDFA  658 (711)
Q Consensus       608 g-----~I~iwDl~sg~~--i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~-----V~iWdl~  658 (711)
                      |     +|..||..+.+-  +..+......+....+  ++...++||.||.     |..||-.
T Consensus       486 ~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~  546 (571)
T KOG4441|consen  486 GTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPE  546 (571)
T ss_pred             CCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCC
Confidence            6     377888877543  3333333333322333  5778888888864     5555443

>KOG3630|consensus

Probab=95.75  E-value=0.11  Score=61.63  Aligned_cols=143  Identities=10%  Similarity=-0.020  Sum_probs=92.2

Q ss_pred             CCEEEEEEcCCCCEEEEE--ECCCeEEEEECCCCceeE-----Eee------cCCCCeeEEEEcCCC-CEEEEEEcCCcE
Q psy14440        503 HPVWDIKFSPHGYYFASA--GHDRMARLWATDSYHPLR-----LFV------GHYSDVDCVQFHPNS-NYVATGSSDRTI  568 (711)
Q Consensus       503 ~~V~~v~~sp~g~~l~sg--s~Dg~i~lwd~~~~~~~~-----~~~------~h~~~V~~v~~sp~~-~~latgs~Dg~I  568 (711)
                      .+|..+...+|+...++.  +.+-.|..||+++....+     -+.      ....-..|+.|+|.- ...+++..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            455556666676544433  334478889987542211     111      223346788898853 335667779999


Q ss_pred             EEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCC----CCCEEEEEEeCCCCEEE
Q psy14440        569 RLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGH----TDVVRALCFSRDGNILA  644 (711)
Q Consensus       569 ~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h----~~~V~sl~fspdg~~La  644 (711)
                      ++..+........--.-....+|++|+|.|+.++.|...|++.-|.. +++...++.+.    ...|.+|+|-..-.+|+
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            98876543222111124567899999999999999999999998875 44544444332    36799999987766766


Q ss_pred             EE
Q psy14440        645 SS  646 (711)
Q Consensus       645 sg  646 (711)
                      +-
T Consensus       260 vy  261 (1405)
T KOG3630|consen  260 VY  261 (1405)
T ss_pred             Ee
Confidence            54

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.70  E-value=0.35  Score=52.80  Aligned_cols=143  Identities=15%  Similarity=0.195  Sum_probs=82.9

Q ss_pred             CEEEEEEcCCCCEEEEEE-----------CCC-eEEEEECCC--Cc--eeEEeecCCCCeeEEEEcCCCCEEEEEEcCCc
Q psy14440        504 PVWDIKFSPHGYYFASAG-----------HDR-MARLWATDS--YH--PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRT  567 (711)
Q Consensus       504 ~V~~v~~sp~g~~l~sgs-----------~Dg-~i~lwd~~~--~~--~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~  567 (711)
                      ....|+|.++|+.+++..           ..+ .|.+++-..  ++  ....+.........+++.+++  |++++....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence            345788888888776653           223 666665432  22  234555555567889999888  444444443


Q ss_pred             EEEEECCCC-----cEEEE---eeC----CCCCeEEEEEecCCCEEEEEeCC-------------------CcEEEEECC
Q psy14440        568 IRLWDCVTG-----SHVRL---LTG----HKAPVYALSFSVCGRFLASAGGD-------------------GNVHMWDLS  616 (711)
Q Consensus       568 I~iwD~~~~-----~~v~~---~~~----h~~~I~~la~spdg~~Lasgs~D-------------------g~I~iwDl~  616 (711)
                      .++.|....     +....   +..    +......++|.+||.+.++-+..                   |.|.-+|..
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            334454321     21112   222    23447789999999876654421                   456666665


Q ss_pred             CCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC
Q psy14440        617 NGHLLTLLTGHTDVVRALCFSRDGNILASSGQD  649 (711)
Q Consensus       617 sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D  649 (711)
                      .++....-.++ ...+.++|+++|+++++-..+
T Consensus       173 g~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       173 GGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence            55543222333 335789999999988765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.69  E-value=0.3  Score=54.53  Aligned_cols=148  Identities=12%  Similarity=0.246  Sum_probs=87.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEE---CCCeEEEEECCCCceeEEeecCCCCeeEEEEcCC----CCEEEEEEcCCcEEEEECC
Q psy14440        502 GHPVWDIKFSPHGYYFASAG---HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN----SNYVATGSSDRTIRLWDCV  574 (711)
Q Consensus       502 ~~~V~~v~~sp~g~~l~sgs---~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~----~~~latgs~Dg~I~iwD~~  574 (711)
                      -.+|..++|. ||+.++-..   .+|.+++=|.       ...|....|..+.|.|-    .-.+.+.-..+.|.||-+.
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds-------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS-------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCCc-------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            4578899998 565544332   3343333222       12355567999999984    3245555568899999875


Q ss_pred             C-----CcEEEEeeCC-CC----CeEEEEEecCCCEEEEEeCCCcEEEEECCC--CeEEEEeeCCCCCEEEEEEeCCCCE
Q psy14440        575 T-----GSHVRLLTGH-KA----PVYALSFSVCGRFLASAGGDGNVHMWDLSN--GHLLTLLTGHTDVVRALCFSRDGNI  642 (711)
Q Consensus       575 ~-----~~~v~~~~~h-~~----~I~~la~spdg~~Lasgs~Dg~I~iwDl~s--g~~i~~l~~h~~~V~sl~fspdg~~  642 (711)
                      -     ++.+..-..+ ..    --..+.|+|....|++-.....=.+++++.  .+....+ ...+.|.+.+|..||+.
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQR  169 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCE
Confidence            2     2222211111 11    112457999988888766554444556543  2333334 34578999999999998


Q ss_pred             EEEEeC-CCcEEEEeCC
Q psy14440        643 LASSGQ-DCSVKLWDFA  658 (711)
Q Consensus       643 Lasgs~-Dg~V~iWdl~  658 (711)
                      |+.+-. .=.-+|||=.
T Consensus       170 LVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  170 LVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEEeCCeEEEEEecCc
Confidence            776543 3346788743

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=95.66  E-value=0.011  Score=40.05  Aligned_cols=29  Identities=24%  Similarity=0.257  Sum_probs=24.9

Q ss_pred             hHHHHHHHHHhhCCCchhHHHHHhhhccC
Q psy14440         90 NTLITMLKLLRQYNLRGTEEQLKKEINVN  118 (711)
Q Consensus        90 ~~~~~v~~yl~k~g~~~~e~~l~~e~~~~  118 (711)
                      +-..+|++||.+.||..|.+.|++|++..
T Consensus         5 ~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        5 ELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            34458999999999999999999998753

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.56  E-value=2.3  Score=43.83  Aligned_cols=114  Identities=18%  Similarity=0.149  Sum_probs=80.7

Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC--CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC---
Q psy14440        544 YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH--KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNG---  618 (711)
Q Consensus       544 ~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h--~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg---  618 (711)
                      .+-+..+.++  ++|+..+.++.-++|+|+.+-..-+....-  .+--.++  .-.|++..++..|.-+.+.|+.+.   
T Consensus        86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeeccCcEEEEECCCCCCc
Confidence            4456667776  568888888888999999876554443322  2333444  445999999997777888998764   


Q ss_pred             eEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCc
Q psy14440        619 HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDE  663 (711)
Q Consensus       619 ~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~  663 (711)
                      .+..++....+.-+.++.|  |++-..+..|+-+.|-|+.+..+.
T Consensus       162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sP  204 (370)
T COG5276         162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSP  204 (370)
T ss_pred             eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCC
Confidence            4455555555555777777  778888889999999999886654

>KOG1916|consensus

Probab=95.55  E-value=0.0066  Score=69.70  Aligned_cols=197  Identities=17%  Similarity=0.183  Sum_probs=114.5

Q ss_pred             eecccCCEEEEEEcCC-CCEEEEEeCCCeEEEEECC--CCeEEE-----EEecCCCCEEEEEEcC---CCCEEEEEECCC
Q psy14440        456 LVGHEGPVRKLSFSPD-RSLLLSCSQDNTIRLWSLL--LWRCLV-----VYKGHGHPVWDIKFSP---HGYYFASAGHDR  524 (711)
Q Consensus       456 l~~h~~~V~~l~fspd-g~~L~s~s~Dg~V~iwdl~--t~~~~~-----~~~~h~~~V~~v~~sp---~g~~l~sgs~Dg  524 (711)
                      ++|..|.|-.+.|-.. -..++  -.-|.+.||++.  .|+...     ....-...+.-|.|+|   +.-++..+-.++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            4466677777777431 11111  223668899874  233222     2222345556677776   456888888899


Q ss_pred             eEEEEECCCCceeEEeecCCCCeeEE-----------EEcCCCCEEEEEEcCCcEEEEECC-----CCcEEEEeeCCC-C
Q psy14440        525 MARLWATDSYHPLRLFVGHYSDVDCV-----------QFHPNSNYVATGSSDRTIRLWDCV-----TGSHVRLLTGHK-A  587 (711)
Q Consensus       525 ~i~lwd~~~~~~~~~~~~h~~~V~~v-----------~~sp~~~~latgs~Dg~I~iwD~~-----~~~~v~~~~~h~-~  587 (711)
                      ++++...++... ..|.+|...+..+           ..+|||..+|+++.||.++.|-+.     .-.|....+.|. .
T Consensus       206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~  284 (1283)
T KOG1916|consen  206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH  284 (1283)
T ss_pred             ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC
Confidence            999877765332 4455676665544           368999999999999998888653     334555566666 3


Q ss_pred             CeEEEEEecC-------C--CEEEEEe-CCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCC------------EEEE
Q psy14440        588 PVYALSFSVC-------G--RFLASAG-GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGN------------ILAS  645 (711)
Q Consensus       588 ~I~~la~spd-------g--~~Lasgs-~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~------------~Las  645 (711)
                      +-.|.-|+.+       |  .++++++ .+..+++|.....+|+  +...-..|..+. -++|.            .+++
T Consensus       285 p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~  361 (1283)
T KOG1916|consen  285 PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVS  361 (1283)
T ss_pred             CceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHHHHH
Confidence            4334334332       1  2344444 3457999988777765  111122233333 12221            2455


Q ss_pred             EeCCCcEEEEeCC
Q psy14440        646 SGQDCSVKLWDFA  658 (711)
Q Consensus       646 gs~Dg~V~iWdl~  658 (711)
                      -+-||+|.+|.=.
T Consensus       362 r~v~~~i~~~qn~  374 (1283)
T KOG1916|consen  362 RSVDGTIKIWQNR  374 (1283)
T ss_pred             hhhHHHHHHhhcc
Confidence            6678888888643

>PHA02790 Kelch-like protein; Provisional

Probab=95.43  E-value=0.64  Score=52.74  Aligned_cols=177  Identities=8%  Similarity=-0.014  Sum_probs=85.5

Q ss_pred             CCEEEEEeCC-----CeEEEEECCCCeEEE--EEecCCCCEEEEEEcCCCCEEEEEECC--CeEEEEECCCCc--eeEEe
Q psy14440        472 RSLLLSCSQD-----NTIRLWSLLLWRCLV--VYKGHGHPVWDIKFSPHGYYFASAGHD--RMARLWATDSYH--PLRLF  540 (711)
Q Consensus       472 g~~L~s~s~D-----g~V~iwdl~t~~~~~--~~~~h~~~V~~v~~sp~g~~l~sgs~D--g~i~lwd~~~~~--~~~~~  540 (711)
                      +..+++||.+     .++..||..+.+-..  .+.........+.  -+|...+.||.+  .++..||..+++  .+..+
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            4455666543     246778876544222  1111111111222  356777777754  357778876442  11111


Q ss_pred             ecCCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCCcEEEE--eeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q psy14440        541 VGHYSDVDCVQFHPNSNYVATGSSDR---TIRLWDCVTGSHVRL--LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       541 ~~h~~~V~~v~~sp~~~~latgs~Dg---~I~iwD~~~~~~v~~--~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl  615 (711)
                      .........+.+  +|+..+.|+.++   ++..||..+++=...  +....... ++ ..-+|+..+.|   |.+.+||.
T Consensus       350 ~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~G---G~~e~ydp  422 (480)
T PHA02790        350 LKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVG---RNAEFYCE  422 (480)
T ss_pred             CCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEEC---CceEEecC
Confidence            111111122222  577777777543   477888776532211  11111111 12 23356666666   35778998


Q ss_pred             CCCeEE--EEeeCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEeCCC
Q psy14440        616 SNGHLL--TLLTGHTDVVRALCFSRDGNILASSGQD-----CSVKLWDFAK  659 (711)
Q Consensus       616 ~sg~~i--~~l~~h~~~V~sl~fspdg~~Lasgs~D-----g~V~iWdl~~  659 (711)
                      .+++-.  ..+....... +++ .-+|++.+.||.+     .+|.+||..+
T Consensus       423 ~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        423 SSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             CCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence            776533  2232212222 222 2367888888865     3466666653

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.40  E-value=1.1  Score=45.84  Aligned_cols=143  Identities=20%  Similarity=0.251  Sum_probs=94.5

Q ss_pred             EEEEcCC-CCEEEEEECCCe-EEEEECCCCceeEEeecCCCC--eeEEEEcCCCCEEEEEEc-----CCcEEEEECCCC-
Q psy14440        507 DIKFSPH-GYYFASAGHDRM-ARLWATDSYHPLRLFVGHYSD--VDCVQFHPNSNYVATGSS-----DRTIRLWDCVTG-  576 (711)
Q Consensus       507 ~v~~sp~-g~~l~sgs~Dg~-i~lwd~~~~~~~~~~~~h~~~--V~~v~~sp~~~~latgs~-----Dg~I~iwD~~~~-  576 (711)
                      .|.|+|. .+-++.+-.-|+ ..++|.+..+...++....+.  .-.-.||++|.+|...-.     -|.|-|||.+.+ 
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            4777774 455666665555 567888877655544322111  112368999999887644     377999999854 


Q ss_pred             cEEEEeeCCCCCeEEEEEecCCCEEEEEeC------C------------CcEEEEECCCCeEEEEee----CCCCCEEEE
Q psy14440        577 SHVRLLTGHKAPVYALSFSVCGRFLASAGG------D------------GNVHMWDLSNGHLLTLLT----GHTDVVRAL  634 (711)
Q Consensus       577 ~~v~~~~~h~~~I~~la~spdg~~Lasgs~------D------------g~I~iwDl~sg~~i~~l~----~h~~~V~sl  634 (711)
                      ..+..+..|.-.-..+.|.+||+.|+.+..      |            -++.+.|..+|.++....    .+.-.|..+
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl  231 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL  231 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence            446677888888888999999999987753      1            134455556666654332    234568888


Q ss_pred             EEeCCCCEEEEEeCC
Q psy14440        635 CFSRDGNILASSGQD  649 (711)
Q Consensus       635 ~fspdg~~Lasgs~D  649 (711)
                      +...||++++.|-..
T Consensus       232 d~g~dgtvwfgcQy~  246 (366)
T COG3490         232 DIGRDGTVWFGCQYR  246 (366)
T ss_pred             eeCCCCcEEEEEEee
Confidence            888888877766443

>KOG1830|consensus

Probab=95.34  E-value=0.064  Score=56.84  Aligned_cols=14  Identities=36%  Similarity=0.394  Sum_probs=7.8

Q ss_pred             chhHHHHHhhhccC
Q psy14440        105 RGTEEQLKKEINVN  118 (711)
Q Consensus       105 ~~~e~~l~~e~~~~  118 (711)
                      ++-|+.-.+|++.+
T Consensus       470 rKVeeqreqeakr~  483 (518)
T KOG1830|consen  470 RKVEEQREQEAKRE  483 (518)
T ss_pred             HHHHHHHHHHHhhc
Confidence            45566666666543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.33  E-value=0.055  Score=40.07  Aligned_cols=33  Identities=18%  Similarity=0.417  Sum_probs=29.6

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQK  420 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~  420 (711)
                      ..|.+++|||...+||.|+.+|.|.|+.++..+
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr   44 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR   44 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence            469999999999999999999999999985543

>KOG4441|consensus

Probab=95.29  E-value=0.54  Score=54.43  Aligned_cols=183  Identities=15%  Similarity=0.198  Sum_probs=97.5

Q ss_pred             CCCEEEEEeCC------CeEEEEECCCCeE--EEEEecCCCCEEEEEEcCCCCEEEEEECC------CeEEEEECCCCc-
Q psy14440        471 DRSLLLSCSQD------NTIRLWSLLLWRC--LVVYKGHGHPVWDIKFSPHGYYFASAGHD------RMARLWATDSYH-  535 (711)
Q Consensus       471 dg~~L~s~s~D------g~V~iwdl~t~~~--~~~~~~h~~~V~~v~~sp~g~~l~sgs~D------g~i~lwd~~~~~-  535 (711)
                      .+..++.||.+      ..|..||..++.-  ...+. +...-.+++.. +|..+++||.|      .++..||.++++ 
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence            34455556555      3577888765532  22222 12222334443 45788899988      357778877654 


Q ss_pred             -eeEEeecCCCCeeEEEEcCCCCEEEEEEcCCc-----EEEEECCCCcEEEEeeCCCCCeEEE-EEecCCCEEEEEeCCC
Q psy14440        536 -PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRT-----IRLWDCVTGSHVRLLTGHKAPVYAL-SFSVCGRFLASAGGDG  608 (711)
Q Consensus       536 -~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~-----I~iwD~~~~~~v~~~~~h~~~I~~l-a~spdg~~Lasgs~Dg  608 (711)
                       .+..+...........+  +|...|+|+.||.     |..||..+.+--.. ........+. ...-+|+..++||.++
T Consensus       362 ~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~gv~~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APMLTRRSGHGVAVLGGKLYIIGGGDG  438 (571)
T ss_pred             eccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccccc-CCCCcceeeeEEEEECCEEEEEcCcCC
Confidence             11112222222222222  6788889988864     77788766532111 1111112222 2233688888888654


Q ss_pred             ------cEEEEECCCCeE--EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCc-----EEEEeCCCC
Q psy14440        609 ------NVHMWDLSNGHL--LTLLTGHTDVVRALCFSRDGNILASSGQDCS-----VKLWDFAKL  660 (711)
Q Consensus       609 ------~I~iwDl~sg~~--i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~-----V~iWdl~~~  660 (711)
                            ++..||..+++-  +..+..-..... ++ .-++.+.+.||.||.     |..||..+.
T Consensus       439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             CccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCC
Confidence                  577888877643  333322222211 22 236788888998873     666776653

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.21  E-value=0.5  Score=54.47  Aligned_cols=111  Identities=15%  Similarity=0.242  Sum_probs=74.8

Q ss_pred             CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee-CCCCCeEEEEEe--cCCCEEEEEeCCCcEEEEECC-----
Q psy14440        545 SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT-GHKAPVYALSFS--VCGRFLASAGGDGNVHMWDLS-----  616 (711)
Q Consensus       545 ~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~-~h~~~I~~la~s--pdg~~Lasgs~Dg~I~iwDl~-----  616 (711)
                      .....+.-+.-++.-++.+...++.|||.+.+.....-. ...+.|.++.|.  ++|+.+.+.|..+.|.+|.-.     
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344445554444444444555679999999887543322 457889999986  689999998999999998531     


Q ss_pred             ----CCeEEEEe--eCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        617 ----NGHLLTLL--TGHT-DVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       617 ----sg~~i~~l--~~h~-~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                          +...++.+  ..|+ .+|.+.+|..+|.+++.+  ++.+.|+|=
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence                12233333  3455 679999999999776654  457888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=95.20  E-value=0.91  Score=52.22  Aligned_cols=98  Identities=14%  Similarity=0.257  Sum_probs=59.0

Q ss_pred             eEEEEcCCCCEEEEEEcCCc-----EEEEECCCCcEEEEe---eCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q psy14440        548 DCVQFHPNSNYVATGSSDRT-----IRLWDCVTGSHVRLL---TGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGH  619 (711)
Q Consensus       548 ~~v~~sp~~~~latgs~Dg~-----I~iwD~~~~~~v~~~---~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~  619 (711)
                      ..++|-|.|..++|-..||.     |+++. ++|-....|   .+....+..++|+-....++.+ ..+.|++|...+-.
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfE-rNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh  327 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFE-RNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH  327 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEc-cCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE
Confidence            35889999999999776653     44444 223211111   1234456667777666666554 44689999987765


Q ss_pred             EEEEeeCCCCCEEEEEEeCCC--CEEEEEe
Q psy14440        620 LLTLLTGHTDVVRALCFSRDG--NILASSG  647 (711)
Q Consensus       620 ~i~~l~~h~~~V~sl~fspdg--~~Lasgs  647 (711)
                      ..-.....-..+.-+.|+|..  .++++++
T Consensus       328 WYLK~e~~ip~~s~vkwhpe~~nTl~f~d~  357 (1243)
T COG5290         328 WYLKVERQIPGISYVKWHPEEKNTLLFRDG  357 (1243)
T ss_pred             EEEEEeecCCCcceeeeccccCcEEEEecC
Confidence            443333334557778999953  3444443

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.96  E-value=5.3  Score=41.32  Aligned_cols=196  Identities=13%  Similarity=0.075  Sum_probs=119.5

Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec--CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc--
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG--HGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH--  535 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~--h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~--  535 (711)
                      .+-+..+.++  +++...+..+.-++|.|+.+-..-.....  ..+--.++..  .|++..++..|.-+.+.|+.+..  
T Consensus        86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence            4456677776  45677777777799999976543322211  1133334444  48888888866667788886543  


Q ss_pred             -eeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC---CCCeEEEEEecCCCEEEEEeCCCcEE
Q psy14440        536 -PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH---KAPVYALSFSVCGRFLASAGGDGNVH  611 (711)
Q Consensus       536 -~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h---~~~I~~la~spdg~~Lasgs~Dg~I~  611 (711)
                       ..........+-..++.+  |++-..+..|+-+.+.|+.....-. |.+|   ...+.++..+++..+++..++  -+.
T Consensus       162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPv-li~~~n~g~g~~sv~vsdnr~y~vvy~e--gvl  236 (370)
T COG5276         162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPV-LIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVL  236 (370)
T ss_pred             eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCe-EEEEEecCCceEEEEecCCeeEEEEccc--ceE
Confidence             223344444555667765  7787788889999999997654322 2222   236788888877666665543  477


Q ss_pred             EEECCCCeEEEEeeCC-CCCEEEE-EEeCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q psy14440        612 MWDLSNGHLLTLLTGH-TDVVRAL-CFSRDGNILASSGQDCSVKLWDFAKLSDEV  664 (711)
Q Consensus       612 iwDl~sg~~i~~l~~h-~~~V~sl-~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  664 (711)
                      +-|..+.+....+... ...+.++ .+.-.|++...+..+.-+-+-|+++.....
T Consensus       237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spf  291 (370)
T COG5276         237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPF  291 (370)
T ss_pred             EEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCc
Confidence            7787665543333211 1222222 333347777777778888888988766544

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.94  E-value=6  Score=41.82  Aligned_cols=225  Identities=14%  Similarity=0.135  Sum_probs=100.7

Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCCeEEEEEC---CCCeEEEEEecC--CCCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL---LLWRCLVVYKGH--GHPVWDIKFSPHGYYFASAGHDRMARLWATDS  533 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl---~t~~~~~~~~~h--~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~  533 (711)
                      -...+.+|.|..+..-+++| ..++| +-..   .+++....-...  .....+|.|... ..+++ +..+ +.+...+.
T Consensus        15 t~~~l~dV~F~d~~~G~~VG-~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~Dg   89 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVG-AYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTTDG   89 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEE-TTTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT-EEEEESST
T ss_pred             CCCceEEEEEecCCEEEEEe-cCCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEecCC
Confidence            34578999998555555555 45643 2222   233333211111  234667777643 34444 4445 44555555


Q ss_pred             CceeEEee---cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE-EeeCCCCCeEEEEEecCCCEEEEEeCCCc
Q psy14440        534 YHPLRLFV---GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR-LLTGHKAPVYALSFSVCGRFLASAGGDGN  609 (711)
Q Consensus       534 ~~~~~~~~---~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~-~~~~h~~~I~~la~spdg~~Lasgs~Dg~  609 (711)
                      ++.-..+.   .-.+....+....++ .+..++..|.|.. ....|+.-. ....-.+.+..+.-++||++++++..-..
T Consensus        90 G~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~  167 (302)
T PF14870_consen   90 GKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF  167 (302)
T ss_dssp             TSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred             CCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence            55433322   112223333333333 3333344444322 223333322 23445577889999999999988876555


Q ss_pred             EEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeec
Q psy14440        610 VHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSY  689 (711)
Q Consensus       610 I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  689 (711)
                      ..-||-....-...-+.-...|.++.|++++.+.+.+ ..|.|++=+.....+.                  -...+...
T Consensus       168 ~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~------------------w~~~~~~~  228 (302)
T PF14870_consen  168 YSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET------------------WSEPIIPI  228 (302)
T ss_dssp             EEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE------------------E---B-TT
T ss_pred             EEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc------------------cccccCCc
Confidence            6678754322222223345789999999998876644 7888887662110000                  01111112


Q ss_pred             ccCCcceEEEEEccCCeeee
Q psy14440        690 KTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       690 ~t~~~pV~~v~Fs~~n~lla  709 (711)
                      .+..--+..++|.+++.+.|
T Consensus       229 ~~~~~~~ld~a~~~~~~~wa  248 (302)
T PF14870_consen  229 KTNGYGILDLAYRPPNEIWA  248 (302)
T ss_dssp             SS--S-EEEEEESSSS-EEE
T ss_pred             ccCceeeEEEEecCCCCEEE
Confidence            23344578899998888777

>KOG4499|consensus

Probab=94.89  E-value=3.6  Score=41.10  Aligned_cols=184  Identities=14%  Similarity=0.176  Sum_probs=94.1

Q ss_pred             CEEEEEeCCCeEEEEECCCCeEEE-EEecCCCCEEEEEEcCCC---CEEEEEECCCeEEEEECCC--CceeEEeec----
Q psy14440        473 SLLLSCSQDNTIRLWSLLLWRCLV-VYKGHGHPVWDIKFSPHG---YYFASAGHDRMARLWATDS--YHPLRLFVG----  542 (711)
Q Consensus       473 ~~L~s~s~Dg~V~iwdl~t~~~~~-~~~~h~~~V~~v~~sp~g---~~l~sgs~Dg~i~lwd~~~--~~~~~~~~~----  542 (711)
                      .++.+--..|.|.-||+.+.+... ++.+  .++.++.+--.|   .+.+.++..-.|.-||...  ....+++..    
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d  105 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD  105 (310)
T ss_pred             eEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence            344444455667778887654332 2222  223333332222   2333333333444566332  222333211    


Q ss_pred             -CCCCeeEEEEcCCCCEEEEEEcC---------CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEE-EeCCCcEE
Q psy14440        543 -HYSDVDCVQFHPNSNYVATGSSD---------RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLAS-AGGDGNVH  611 (711)
Q Consensus       543 -h~~~V~~v~~sp~~~~latgs~D---------g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Las-gs~Dg~I~  611 (711)
                       .....+.-..+|+|+|++-.-.|         |.++.|-  -+..+..+.+.-+--+.++|+.+.+.+.. -+.+-.|.
T Consensus       106 ~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~--~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  106 RKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWL--AGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             HHhcccccCccCCCCceeeeeeccccccccccccEEEEec--cCCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence             13445666778999994432222         2333332  12223333333344567899988776554 45566787


Q ss_pred             EEE--CCCCe-----EEEEeeCC----CCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        612 MWD--LSNGH-----LLTLLTGH----TDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       612 iwD--l~sg~-----~i~~l~~h----~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      -||  ..+|.     .+..++..    .-.--.++...+|++.+++-..|+|...|..+.
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG  243 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG  243 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC
Confidence            787  55553     33333321    111234555668888888888888888887653

>KOG0396|consensus

Probab=94.86  E-value=0.1  Score=54.77  Aligned_cols=135  Identities=18%  Similarity=0.233  Sum_probs=97.5

Q ss_pred             HHHHHHHHhhCCCchhHHHHHhhhccCCCCCCCCCccccccccccccCCChhHHHHH-----------HHHHHHHHhhhc
Q psy14440         92 LITMLKLLRQYNLRGTEEQLKKEINVNDLGIDPNDSEIGDLLSAYESEGDPNLYEDA-----------YQDLKKFIENSL  160 (711)
Q Consensus        92 ~~~v~~yl~k~g~~~~e~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~v~~~l  160 (711)
                      -+.|.+|+.+.||..|...|-+++.+...    .               |-+.|.++           +.-.-.|+...-
T Consensus       119 ~r~vvdhmlr~gy~~~A~~L~K~s~ledl----v---------------D~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk  179 (389)
T KOG0396|consen  119 DRFVVDHMLRNGYFGAAVLLGKKSQLEDL----V---------------DSDVYKRAYGIRDSLLAGELEPALSWCKEHK  179 (389)
T ss_pred             HHHHHHHHHHcCchhHHHHHHHhhhhhhh----H---------------hHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            34799999999999999999999876632    1               22334444           344556766653


Q ss_pred             ccchhhhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcCCCcchHHHHHHHHhcCCCcccccccHHHHHh-hcCccEEE
Q psy14440        161 DVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETF-RSTEFIIR  239 (711)
Q Consensus       161 d~~k~el~~~l~p~f~~~yl~lv~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~k~~v~  239 (711)
                      -..|.+=+.|-|=+=..=|++||..+...+|.+|++||-..+...|.++|+...+...--         .| -..||..-
T Consensus       180 ~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~---------~~t~~sky~~l  250 (389)
T KOG0396|consen  180 VELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFP---------KYTSSSKYLNL  250 (389)
T ss_pred             HHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCc---------cccCcccccCc
Confidence            333434467888999999999999999999999999998888889999999887754321         11 14567777


Q ss_pred             eCHHHHHHHH-HHHhh
Q psy14440        240 MSRDTLSLLK-RHLQE  254 (711)
Q Consensus       240 ~s~~~~~~l~-~~l~~  254 (711)
                      ++.+-++.|- .|+++
T Consensus       251 ~~~~rw~~l~~lF~s~  266 (389)
T KOG0396|consen  251 LTADRWSVLADLFLSE  266 (389)
T ss_pred             ccHHHHHHHHHHhhHH
Confidence            7777776664 25543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.76  E-value=6.2  Score=41.16  Aligned_cols=224  Identities=18%  Similarity=0.252  Sum_probs=122.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee-----cccCCEE
Q psy14440        390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV-----GHEGPVR  464 (711)
Q Consensus       390 V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~-----~h~~~V~  464 (711)
                      -+.++|+|.+.+-++....+...+||..........     +                   .....+-     ...+..+
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~-----~-------------------~L~vtiP~~~~~~~~~~PT   80 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ-----D-------------------PLVVVIPAPPPLAAEGTPT   80 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCc-----c-------------------ceEEEecCCCCCCCCCCcc
Confidence            468899999887777777888999998622100000     0                   0000000     0112334


Q ss_pred             EEEEcCCC------------CEEEEEeCCCeEEEEECCCCeE-----EEEEe-cCCCCEE-EEEEcC--CCCEEEEE-EC
Q psy14440        465 KLSFSPDR------------SLLLSCSQDNTIRLWSLLLWRC-----LVVYK-GHGHPVW-DIKFSP--HGYYFASA-GH  522 (711)
Q Consensus       465 ~l~fspdg------------~~L~s~s~Dg~V~iwdl~t~~~-----~~~~~-~h~~~V~-~v~~sp--~g~~l~sg-s~  522 (711)
                      .+.|+...            ..++.+++||+|.-|.-.....     ...+. +....|+ .+++..  .+.+|..+ -+
T Consensus        81 GiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~  160 (336)
T TIGR03118        81 GQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR  160 (336)
T ss_pred             EEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC
Confidence            44443211            2367889999999998532211     12222 1123332 344443  23444443 46


Q ss_pred             CCeEEEEECCCCcee--EEeecC-----CCC-----------eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee-
Q psy14440        523 DRMARLWATDSYHPL--RLFVGH-----YSD-----------VDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT-  583 (711)
Q Consensus       523 Dg~i~lwd~~~~~~~--~~~~~h-----~~~-----------V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~-  583 (711)
                      .++|.++|-.=.+..  ..|...     ..+           |+-..-.++.+.=+.|..-|.|-+||. .|+.++.+. 
T Consensus       161 ~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as  239 (336)
T TIGR03118       161 QGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVAS  239 (336)
T ss_pred             CCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEecc
Confidence            788888876532211  001100     000           111111222222233344578999996 577888774 


Q ss_pred             -CCCCCeEEEEEec------CCCEEEEEeCCCcEEEEECCCCeEEEEeeCCC------CCEEEEEEeC
Q psy14440        584 -GHKAPVYALSFSV------CGRFLASAGGDGNVHMWDLSNGHLLTLLTGHT------DVVRALCFSR  638 (711)
Q Consensus       584 -~h~~~I~~la~sp------dg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~------~~V~sl~fsp  638 (711)
                       +.-..-+.|+..|      .|.+|+---.||+|..||..+|+.+..+....      ..++.|+|..
T Consensus       240 ~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       240 SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence             2233455676655      46677766689999999999999888876543      3578888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2280|consensus

Probab=94.66  E-value=1.3  Score=50.96  Aligned_cols=162  Identities=15%  Similarity=0.187  Sum_probs=85.4

Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE----EecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV----YKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~----~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      ..+.+-.+.|+.+. .|++...||++++|++.. +.+..    .......|..+.+..+|-.+.+.  +|.+.+-+-...
T Consensus        82 ~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~  157 (829)
T KOG2280|consen   82 KHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEE  157 (829)
T ss_pred             cCCCeeeecccCCc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCc
Confidence            34478899999665 577778999999999852 22222    12223345555555555433333  455544433222


Q ss_pred             ceeEEeec-CCCCeeEEEEc--CCCC---EEEEEE-cCC-cEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeC
Q psy14440        535 HPLRLFVG-HYSDVDCVQFH--PNSN---YVATGS-SDR-TIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       535 ~~~~~~~~-h~~~V~~v~~s--p~~~---~latgs-~Dg-~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~  606 (711)
                      ..++.+.. ......+.+|.  +++.   .++-.. ..+ .+.--+..+.+ ...+....+.+..+.+|+++++|+--..
T Consensus       158 ~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q-~~~~~~~~~~~~ki~VS~n~~~laLyt~  236 (829)
T KOG2280|consen  158 PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQ-LHALSWPNSSVVKISVSPNRRFLALYTE  236 (829)
T ss_pred             chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccc-ccccCCCCceEEEEEEcCCcceEEEEec
Confidence            22222222 11222223332  2211   111110 001 01111111111 2222323466788999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEee
Q psy14440        607 DGNVHMWDLSNGHLLTLLT  625 (711)
Q Consensus       607 Dg~I~iwDl~sg~~i~~l~  625 (711)
                      +|.|.+-+....+.+..+.
T Consensus       237 ~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  237 TGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             CCcEEEEecchhhhhhccC
Confidence            9999999888777766665

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.65  E-value=1.1  Score=43.83  Aligned_cols=172  Identities=15%  Similarity=0.167  Sum_probs=98.4

Q ss_pred             CCCEEEEEeC--CCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEE-EECCCeEEEEECCCCceeEEeecCCCCe
Q psy14440        471 DRSLLLSCSQ--DNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFAS-AGHDRMARLWATDSYHPLRLFVGHYSDV  547 (711)
Q Consensus       471 dg~~L~s~s~--Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~s-gs~Dg~i~lwd~~~~~~~~~~~~h~~~V  547 (711)
                      +|.++.+.+.  ...|++||+.+++.+..-+-....+..=-...-|.+|.. .-.+|....+|.++.+.+..+.- .+.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence            4556666654  346999999999887765533112211111112333332 23688899999998887766542 2223


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEe----eC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy14440        548 DCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLL----TG-HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLT  622 (711)
Q Consensus       548 ~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~----~~-h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~  622 (711)
                      ..++.  ++.-|+.++...+++.-|-.+.....++    .+ .-..++.+.|- +|...|-.-.+..|...|..+|+.+.
T Consensus       134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence            34433  4555776666667777676554333222    21 11223344442 56655555555667777777777766


Q ss_pred             Eee------------CCCCCEEEEEEeCCC-CEEEEE
Q psy14440        623 LLT------------GHTDVVRALCFSRDG-NILASS  646 (711)
Q Consensus       623 ~l~------------~h~~~V~sl~fspdg-~~Lasg  646 (711)
                      .+.            .|.+..+.+++.+++ +++++|
T Consensus       211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            543            344567899999987 455554

>PRK13684 Ycf48-like protein; Provisional

Probab=94.61  E-value=2.7  Score=45.32  Aligned_cols=148  Identities=15%  Similarity=0.145  Sum_probs=87.7

Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEE-EECC--CCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRL-WSLL--LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP  536 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~i-wdl~--t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~  536 (711)
                      .+.++++.+.+++.+++++ ..|.+.. ++-.  +++.+  ...-...++++.+.+++..++++ ..|.+++=+.+.+..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            4678999999988666555 4564443 2221  23322  22345678999999988776665 467665433444433


Q ss_pred             eEEeec----CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee---CCCCCeEEEEEecCCCEEEEEeCCCc
Q psy14440        537 LRLFVG----HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT---GHKAPVYALSFSVCGRFLASAGGDGN  609 (711)
Q Consensus       537 ~~~~~~----h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~---~h~~~I~~la~spdg~~Lasgs~Dg~  609 (711)
                      -.....    ....+..+.+++++..+++| .+|.|. .....|+.-....   +-....+.+.|..+++.+++| ..|.
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~  324 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGV  324 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCce
Confidence            222111    12347788999887766555 466554 4445555444432   222457788887777666554 6688


Q ss_pred             EEEEE
Q psy14440        610 VHMWD  614 (711)
Q Consensus       610 I~iwD  614 (711)
                      |..|+
T Consensus       325 il~~~  329 (334)
T PRK13684        325 LLRYV  329 (334)
T ss_pred             EEEec
Confidence            87776

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.51  E-value=2.6  Score=41.80  Aligned_cols=138  Identities=14%  Similarity=0.167  Sum_probs=81.1

Q ss_pred             EEEEEECCCeEEEEECC--CCceeEEeecCCCCeeEEEEcCCCCEEEEEEcC------CcEEEE---ECC--CCcEEE-E
Q psy14440        516 YFASAGHDRMARLWATD--SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD------RTIRLW---DCV--TGSHVR-L  581 (711)
Q Consensus       516 ~l~sgs~Dg~i~lwd~~--~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D------g~I~iw---D~~--~~~~v~-~  581 (711)
                      .+..+...+.|.+|++.  ....+..|.. -+.|..+.++..|+||+|--.+      ..+|+|   ...  ....++ .
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            44444667889999988  3344555543 4789999999999999996432      256664   222  112222 2


Q ss_pred             eeCC---------------------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE-EE-----Eee----CC-C-
Q psy14440        582 LTGH---------------------KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL-LT-----LLT----GH-T-  628 (711)
Q Consensus       582 ~~~h---------------------~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~-i~-----~l~----~h-~-  628 (711)
                      +.||                     ...+.+++..|-..-|+.|+ ++++.+|.+..+.. ..     .+.    .| . 
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~  187 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN  187 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence            2232                     23566777777433445554 35899998765433 11     111    12 1 


Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        629 DVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       629 ~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      -....+++.  +.++|..+ +-.+++..+.
T Consensus       188 ~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~  214 (215)
T PF14761_consen  188 FKPTQVAIC--EGYIAVMS-DLEVLVLKLE  214 (215)
T ss_pred             ceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence            224556665  67888776 5577777653

>KOG2377|consensus

Probab=94.47  E-value=5.1  Score=43.71  Aligned_cols=117  Identities=13%  Similarity=0.237  Sum_probs=81.2

Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE----EEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC-
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCL----VVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS-  533 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~----~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~-  533 (711)
                      ..|+|.++.||+|++.|++--.|++|.+++....+..    ...+..+..|....|+.. .-+|..+..| +-+|.+.. 
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            4679999999999999999999999999998432221    222334566889999865 5566665444 56665543 


Q ss_pred             CceeEEeecCCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCc
Q psy14440        534 YHPLRLFVGHYSDVDCVQFHPNSNYVATGSS--DRTIRLWDCVTGS  577 (711)
Q Consensus       534 ~~~~~~~~~h~~~V~~v~~sp~~~~latgs~--Dg~I~iwD~~~~~  577 (711)
                      ...+|....|...|.-..|.++.+.+..++.  .+++.=+-++++.
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~  188 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT  188 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence            3567777788899999999998877555443  4444444444443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.45  E-value=7.7  Score=42.29  Aligned_cols=154  Identities=11%  Similarity=-0.030  Sum_probs=88.2

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEEecCC-CCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCC---C
Q psy14440        471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHG-HPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS---D  546 (711)
Q Consensus       471 dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~-~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~---~  546 (711)
                      +|+ |+.++.+|.+..+|..+++.+..+.... ..+..-....++ .+..++.++.+...+.+++...........   .
T Consensus       111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~  188 (370)
T COG1520         111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLS  188 (370)
T ss_pred             CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccc
Confidence            565 8888889999999998899988887665 111111222233 344444778888888888776555332211   1


Q ss_pred             eeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEeeCCC----CCeEEEEEecC-----CCEEEEEeCCCcEEEEEC
Q psy14440        547 VDCVQFHPNSNYVATGSS--DRTIRLWDCVTGSHVRLLTGHK----APVYALSFSVC-----GRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       547 V~~v~~sp~~~~latgs~--Dg~I~iwD~~~~~~v~~~~~h~----~~I~~la~spd-----g~~Lasgs~Dg~I~iwDl  615 (711)
                      +..-.. .....++.++.  ++.+.-.|..+|........+.    ..+........     +.-++.++.+|.+...|.
T Consensus       189 ~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~  267 (370)
T COG1520         189 IYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDA  267 (370)
T ss_pred             cccCce-eecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEc
Confidence            111000 12334444544  5667777888887765532111    11100111111     122356667788999999


Q ss_pred             CCCeEEEEeeCC
Q psy14440        616 SNGHLLTLLTGH  627 (711)
Q Consensus       616 ~sg~~i~~l~~h  627 (711)
                      .+|+.+-.+...
T Consensus       268 ~~G~~~W~~~~~  279 (370)
T COG1520         268 DTGELIWSFPAG  279 (370)
T ss_pred             CCCceEEEEecc
Confidence            999988877753

>KOG4849|consensus

Probab=94.43  E-value=0.15  Score=52.81  Aligned_cols=10  Identities=30%  Similarity=0.355  Sum_probs=4.3

Q ss_pred             cchhhhhhhh
Q psy14440        162 VYKYELGLVL  171 (711)
Q Consensus       162 ~~k~el~~~l  171 (711)
                      -||.-+..||
T Consensus       388 Dy~~AiETll  397 (498)
T KOG4849|consen  388 DYKGAIETLL  397 (498)
T ss_pred             cchhHHHHHH
Confidence            3444444443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.36  E-value=0.11  Score=38.42  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q psy14440        586 KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL  620 (711)
Q Consensus       586 ~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~  620 (711)
                      ...|.+++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456999999999999999999999999998 5554

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=94.20  E-value=10  Score=41.27  Aligned_cols=188  Identities=18%  Similarity=0.190  Sum_probs=110.2

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEc----CCCCE--EEEEE-CC---CeEEEEECCCC-ceeE
Q psy14440        470 PDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFS----PHGYY--FASAG-HD---RMARLWATDSY-HPLR  538 (711)
Q Consensus       470 pdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~s----p~g~~--l~sgs-~D---g~i~lwd~~~~-~~~~  538 (711)
                      |...+++....++-+.+||+. |+.+..+.  .+.+..|..-    -.|+.  |+.++ .+   .+|++|.++.. ..+.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            355677888888889999997 55555554  2333433321    13332  34444 32   47999977531 2233


Q ss_pred             Eeec-------CCCCeeEEEEc--C-CCC-EEEEEEcCCcEEEEECC---CC----cEEEEeeCCCCCeEEEEEecCCCE
Q psy14440        539 LFVG-------HYSDVDCVQFH--P-NSN-YVATGSSDRTIRLWDCV---TG----SHVRLLTGHKAPVYALSFSVCGRF  600 (711)
Q Consensus       539 ~~~~-------h~~~V~~v~~s--p-~~~-~latgs~Dg~I~iwD~~---~~----~~v~~~~~h~~~I~~la~spdg~~  600 (711)
                      .+..       ....+..+|+.  + +|. |++....+|.+.-|-+.   .|    +.+|.|.. .+.+..++......+
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~  221 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGR  221 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCC
Confidence            3321       22346677763  3 344 56667788988777653   33    46788875 447888888888889


Q ss_pred             EEEEeCCCcEEEEECCC-----CeEEEEeeC--CCCCEEEEEEeC--CCC--EEEEEeCCCcEEEEeCCCCC
Q psy14440        601 LASAGGDGNVHMWDLSN-----GHLLTLLTG--HTDVVRALCFSR--DGN--ILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       601 Lasgs~Dg~I~iwDl~s-----g~~i~~l~~--h~~~V~sl~fsp--dg~--~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      |+.|-++.-|.-|+..-     ++.+....+  ....|-.|++-.  +|+  +|+|.-.+++..||+.....
T Consensus       222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~  293 (381)
T PF02333_consen  222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN  293 (381)
T ss_dssp             EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred             EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence            99999998888887752     344444433  346788888753  333  45555568899999987543

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.19  E-value=2.7  Score=41.70  Aligned_cols=138  Identities=14%  Similarity=0.243  Sum_probs=81.8

Q ss_pred             CEEEEEeCCCeEEEEECC--CCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC---C---eEEEE---ECC--CCceeE-
Q psy14440        473 SLLLSCSQDNTIRLWSLL--LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD---R---MARLW---ATD--SYHPLR-  538 (711)
Q Consensus       473 ~~L~s~s~Dg~V~iwdl~--t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D---g---~i~lw---d~~--~~~~~~-  538 (711)
                      ..|+.+...+.|.+|++.  ..+.+..+.. -+.|+.+.++..|+|++|--.+   .   .+|+|   ...  ...+++ 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            456555666789999997  3445566653 4789999999999999997432   2   56665   221  223333 


Q ss_pred             EeecC---------------------CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-E-----EEee----CCCC
Q psy14440        539 LFVGH---------------------YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH-V-----RLLT----GHKA  587 (711)
Q Consensus       539 ~~~~h---------------------~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~-v-----~~~~----~h~~  587 (711)
                      .+.||                     ...+.|++..|...-|+.|+ ++++.+|.+..... .     -.|.    .|..
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~  186 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID  186 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence            22232                     23567888888544555665 66788997754432 1     1111    1222


Q ss_pred             --CeEEEEEecCCCEEEEEeCCCcEEEEEC
Q psy14440        588 --PVYALSFSVCGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       588 --~I~~la~spdg~~Lasgs~Dg~I~iwDl  615 (711)
                        ....+++.  +.|+|..+. -.++++.+
T Consensus       187 ~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl  213 (215)
T PF14761_consen  187 NFKPTQVAIC--EGYIAVMSD-LEVLVLKL  213 (215)
T ss_pred             CceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence              23444443  778877754 45666654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.12  E-value=1.6  Score=48.09  Aligned_cols=142  Identities=12%  Similarity=0.133  Sum_probs=91.6

Q ss_pred             CCCEEE-EEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCC-------EEEEEECCCeEEEEECCC-CceeEEee
Q psy14440        471 DRSLLL-SCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGY-------YFASAGHDRMARLWATDS-YHPLRLFV  541 (711)
Q Consensus       471 dg~~L~-s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~-------~l~sgs~Dg~i~lwd~~~-~~~~~~~~  541 (711)
                      |...|+ .|+....++-.|++.|+.+..+..|...  -+.|.|+.+       .-++|-.+..|.-.|.+- +..+....
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            444443 4555667888899999999999877765  477777432       234444555555556542 22222111


Q ss_pred             c----CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy14440        542 G----HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS  616 (711)
Q Consensus       542 ~----h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~  616 (711)
                      .    ......|..-. .+.|+|+||..|.||+||--..+....+.+-...|..|..+.+|++|++.|. ..+.+-|+.
T Consensus       556 sKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         556 SKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             ehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            0    11223333333 4569999999999999996544444455667788999999999999887765 477787764

>PHA03098 kelch-like protein; Provisional

Probab=94.08  E-value=1.1  Score=51.42  Aligned_cols=143  Identities=9%  Similarity=0.089  Sum_probs=68.5

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCe--EEEEEecCCCCEEEEEEcCCCCEEEEEECC------CeEEEEECCCCc--
Q psy14440        471 DRSLLLSCSQD-----NTIRLWSLLLWR--CLVVYKGHGHPVWDIKFSPHGYYFASAGHD------RMARLWATDSYH--  535 (711)
Q Consensus       471 dg~~L~s~s~D-----g~V~iwdl~t~~--~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D------g~i~lwd~~~~~--  535 (711)
                      ++..++.||.+     .++..||..+.+  ....+....... +++. -+++.++.||.+      ..+..||..+.+  
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            56666777754     347778876532  222221111111 1221 256677777732      457888877542  


Q ss_pred             eeEEeecCCCCeeEEEEcCCCCEEEEEEcC--------CcEEEEECCCCcEEEE--eeCCCCCeEEEEEecCCCEEEEEe
Q psy14440        536 PLRLFVGHYSDVDCVQFHPNSNYVATGSSD--------RTIRLWDCVTGSHVRL--LTGHKAPVYALSFSVCGRFLASAG  605 (711)
Q Consensus       536 ~~~~~~~h~~~V~~v~~sp~~~~latgs~D--------g~I~iwD~~~~~~v~~--~~~h~~~I~~la~spdg~~Lasgs  605 (711)
                      .+..+...... .+++.. ++..++.|+.+        ..+.+||..+++-...  +.........+.  -+++.++.||
T Consensus       420 ~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG  495 (534)
T PHA03098        420 KGSPLPISHYG-GCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGG  495 (534)
T ss_pred             ecCCCCccccC-ceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcC
Confidence            11111111111 122222 45566666542        2388899877643222  111111112222  2677777776


Q ss_pred             CC-----CcEEEEECCCCe
Q psy14440        606 GD-----GNVHMWDLSNGH  619 (711)
Q Consensus       606 ~D-----g~I~iwDl~sg~  619 (711)
                      .+     +.|.+||..+.+
T Consensus       496 ~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        496 DKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CcCCcccceeEEEeCCCCE
Confidence            54     367777776654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.05  E-value=1.4  Score=52.14  Aligned_cols=28  Identities=25%  Similarity=0.334  Sum_probs=22.3

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSL  489 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~V~iwdl  489 (711)
                      -.|..+.++++|++|+..|..| |.|-.+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~L  112 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLEL  112 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence            4689999999999999988876 555444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.94  E-value=1.7  Score=50.30  Aligned_cols=110  Identities=12%  Similarity=0.115  Sum_probs=73.5

Q ss_pred             CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEee-cCCCCeeEEEEc--CCCCEEEEEEcCCcEEEEECC------
Q psy14440        504 PVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFV-GHYSDVDCVQFH--PNSNYVATGSSDRTIRLWDCV------  574 (711)
Q Consensus       504 ~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~-~h~~~V~~v~~s--p~~~~latgs~Dg~I~iwD~~------  574 (711)
                      ...-+.-+..++..++.+...++.|||.+.+.....-. ...+.|.++.|.  |++..+++.+-.+.|.+|--.      
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            44445555556555555566789999999876333221 456789999996  478888888889999988532      


Q ss_pred             ---CCcEEEEe--eCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q psy14440        575 ---TGSHVRLL--TGHK-APVYALSFSVCGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       575 ---~~~~v~~~--~~h~-~~I~~la~spdg~~Lasgs~Dg~I~iwDl  615 (711)
                         +...++.+  ..|+ .+|.+..|..+|.+++.+|  +.+.|+|-
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence               11233333  2344 6789999999997766553  47888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.72  E-value=20  Score=43.26  Aligned_cols=157  Identities=15%  Similarity=0.175  Sum_probs=93.6

Q ss_pred             cCCCCEEEEEEc---C----CCCEEEEEECCCeEEEEECC------C---------CceeEEee---cCCCCeeEEEEcC
Q psy14440        500 GHGHPVWDIKFS---P----HGYYFASAGHDRMARLWATD------S---------YHPLRLFV---GHYSDVDCVQFHP  554 (711)
Q Consensus       500 ~h~~~V~~v~~s---p----~g~~l~sgs~Dg~i~lwd~~------~---------~~~~~~~~---~h~~~V~~v~~sp  554 (711)
                      ....+|..|+|.   .    ..++|++-. ...+.|+...      .         ..++..+.   ........|+|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            356778888887   2    223555554 3445555511      1         01223332   1234567899998


Q ss_pred             -CCCEEEEEEcCCcEEEEECCCCc-----EEEEeeCCCC----------CeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q psy14440        555 -NSNYVATGSSDRTIRLWDCVTGS-----HVRLLTGHKA----------PVYALSFSVCGRFLASAGGDGNVHMWDLSNG  618 (711)
Q Consensus       555 -~~~~latgs~Dg~I~iwD~~~~~-----~v~~~~~h~~----------~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg  618 (711)
                       +...||+....|...|||+..+.     .++....+.+          ....|.|..+.+.|++++. ..+.++|+.+.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence             56689999999999999992111     1222112222          2347889888778877765 57899999887


Q ss_pred             eEEE-Ee-eCCCCCEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCC
Q psy14440        619 HLLT-LL-TGHTDVVRALCFSRD--GNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       619 ~~i~-~l-~~h~~~V~sl~fspd--g~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      .... .. ......|.++.-+++  +..++-.  ...|...|+...
T Consensus       235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~  278 (765)
T PF10214_consen  235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS  278 (765)
T ss_pred             CccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence            6633 22 223467888887776  3333332  246777777763

These proteins are found in fungi.

>PHA02790 Kelch-like protein; Provisional

Probab=93.62  E-value=3.6  Score=46.67  Aligned_cols=140  Identities=8%  Similarity=-0.028  Sum_probs=67.0

Q ss_pred             CCCEEEEEeCC--CeEEEEECCCC--eEEEEEecCCCCEEEEEEcCCCCEEEEEECCC---eEEEEECCCCc--eeEEee
Q psy14440        471 DRSLLLSCSQD--NTIRLWSLLLW--RCLVVYKGHGHPVWDIKFSPHGYYFASAGHDR---MARLWATDSYH--PLRLFV  541 (711)
Q Consensus       471 dg~~L~s~s~D--g~V~iwdl~t~--~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg---~i~lwd~~~~~--~~~~~~  541 (711)
                      +|...+.||.+  .++..||..+.  ..+..+.........+  .-+|+..+.||.++   .+..||.++..  .+..+.
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~  395 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY  395 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence            56666777653  35778887543  2222222111111112  22577778877653   46678876542  111111


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE--EeeCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEE
Q psy14440        542 GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR--LLTGHKAPVYALSFSVCGRFLASAGGD-----GNVHMWD  614 (711)
Q Consensus       542 ~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~--~~~~h~~~I~~la~spdg~~Lasgs~D-----g~I~iwD  614 (711)
                      ...... +++. -++...+.|   |.+.+||..+++=..  .+.........+  .-+|+..+.||.+     ..|..||
T Consensus       396 ~~r~~~-~~~~-~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd  468 (480)
T PHA02790        396 YPHYKS-CALV-FGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYN  468 (480)
T ss_pred             Cccccc-eEEE-ECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEE
Confidence            111111 2222 245566666   357788887654221  121112222222  2357777777754     2456666


Q ss_pred             CCCCe
Q psy14440        615 LSNGH  619 (711)
Q Consensus       615 l~sg~  619 (711)
                      ..+++
T Consensus       469 ~~~~~  473 (480)
T PHA02790        469 NRTYS  473 (480)
T ss_pred             CCCCe
Confidence            65543

>KOG1916|consensus

Probab=93.40  E-value=0.059  Score=62.27  Aligned_cols=178  Identities=20%  Similarity=0.163  Sum_probs=104.3

Q ss_pred             CeEEEEECCCCe-EEEEEecCCCCEEEEEEcCCC-CEEEEEECCCeEEEEECCC--Cce-----eEEeecCCCCeeEEEE
Q psy14440        482 NTIRLWSLLLWR-CLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDS--YHP-----LRLFVGHYSDVDCVQF  552 (711)
Q Consensus       482 g~V~iwdl~t~~-~~~~~~~h~~~V~~v~~sp~g-~~l~sgs~Dg~i~lwd~~~--~~~-----~~~~~~h~~~V~~v~~  552 (711)
                      +.|++-+..+.- .....++..+.|-++.|-... ..+.  -.-|.+.+|+++-  |+.     +........++.-|.|
T Consensus       111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~w  188 (1283)
T KOG1916|consen  111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSW  188 (1283)
T ss_pred             hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeee
Confidence            446666654322 112345666777777774311 1111  2335678888763  322     2222234455666666


Q ss_pred             cC---CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEE-----------EecCCCEEEEEeCCCcEEEEECC--
Q psy14440        553 HP---NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALS-----------FSVCGRFLASAGGDGNVHMWDLS--  616 (711)
Q Consensus       553 sp---~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la-----------~spdg~~Lasgs~Dg~I~iwDl~--  616 (711)
                      .|   +.-++.++-.+++|++....+... ..|.+|...++.++           .||||..+|.++.||.+++|-+.  
T Consensus       189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~  267 (1283)
T KOG1916|consen  189 CPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT  267 (1283)
T ss_pred             cccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee
Confidence            65   677888888899999877654432 44556766655543           58999999999999998888653  


Q ss_pred             ---CCeEEEEeeCCCCC--EEEEEEeCC-------C--CEEEEEeC-CCcEEEEeCCCCCCc
Q psy14440        617 ---NGHLLTLLTGHTDV--VRALCFSRD-------G--NILASSGQ-DCSVKLWDFAKLSDE  663 (711)
Q Consensus       617 ---sg~~i~~l~~h~~~--V~sl~fspd-------g--~~Lasgs~-Dg~V~iWdl~~~~~~  663 (711)
                         .-+++..++.|.+.  |..+ |+.+       |  .++++++. ...+++|.-......
T Consensus       268 g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  268 GKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence               23455566666632  3222 3221       1  24555554 345899986654443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.17  E-value=2.9  Score=48.88  Aligned_cols=102  Identities=13%  Similarity=0.209  Sum_probs=71.0

Q ss_pred             CCCEEEEEeCCCeEEEEECCC-------C----e---------EEEEEecCCCCEEEEEEc--CCCCEEEEEECCCeEEE
Q psy14440        471 DRSLLLSCSQDNTIRLWSLLL-------W----R---------CLVVYKGHGHPVWDIKFS--PHGYYFASAGHDRMARL  528 (711)
Q Consensus       471 dg~~L~s~s~Dg~V~iwdl~t-------~----~---------~~~~~~~h~~~V~~v~~s--p~g~~l~sgs~Dg~i~l  528 (711)
                      +...|+.|..||.|.+|.+++       .    .         +...++ ....+|+++++  ...++||+++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            556899999999999997621       1    0         111222 34579999998  77789999988888888


Q ss_pred             EECCCC---ceeEEeecCCCCeeEEEEcCCC---C---EEEEEEcCCcEEEEEC
Q psy14440        529 WATDSY---HPLRLFVGHYSDVDCVQFHPNS---N---YVATGSSDRTIRLWDC  573 (711)
Q Consensus       529 wd~~~~---~~~~~~~~h~~~V~~v~~sp~~---~---~latgs~Dg~I~iwD~  573 (711)
                      |-....   .....-..|...|-||+|-++.   .   .|++++-.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            865432   1111111356678999997743   2   7888888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.91  E-value=18  Score=39.99  Aligned_cols=137  Identities=12%  Similarity=0.084  Sum_probs=76.1

Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEEECCCCcE--EEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-----E
Q psy14440        548 DCVQFHPNSNYVATGSSDRTIRLWDCVTGSH--VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGH-----L  620 (711)
Q Consensus       548 ~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~--v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~-----~  620 (711)
                      ..+...+++.+++.|.....++-||  .|..  ...-......++++.|.++|..++++ .+|.+. |....|+     .
T Consensus       242 ~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~  317 (398)
T PLN00033        242 STVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFD  317 (398)
T ss_pred             eeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccc
Confidence            3455667777777766443334454  2322  11222345678999999999888766 456543 4444443     2


Q ss_pred             EEEeeCC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEE
Q psy14440        621 LTLLTGH--TDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLH  698 (711)
Q Consensus       621 i~~l~~h--~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~  698 (711)
                      .......  ...+.++.|..++..+++ |.+|.+....-.- + ..                   ..+..-..-..+.+.
T Consensus       318 f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~D~G-~-tW-------------------~~~~~~~~~~~~ly~  375 (398)
T PLN00033        318 FEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRSTDGG-K-SW-------------------KRDKGADNIAANLYS  375 (398)
T ss_pred             eeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeCCCC-c-ce-------------------eEccccCCCCcceeE
Confidence            2332221  235889999988776554 5678776653211 0 00                   000000112357889


Q ss_pred             EEEccCCeeee-C
Q psy14440        699 LIFSRRNILLR-G  710 (711)
Q Consensus       699 v~Fs~~n~lla-G  710 (711)
                      +.|..+|..++ |
T Consensus       376 v~f~~~~~g~~~G  388 (398)
T PLN00033        376 VKFFDDKKGFVLG  388 (398)
T ss_pred             EEEcCCCceEEEe
Confidence            99988777776 5

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.48  E-value=1.6  Score=47.95  Aligned_cols=140  Identities=15%  Similarity=0.189  Sum_probs=91.2

Q ss_pred             EEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCC-------EEEEEEcCCcEEEEECCC-CcEEEEeeC---
Q psy14440        516 YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSN-------YVATGSSDRTIRLWDCVT-GSHVRLLTG---  584 (711)
Q Consensus       516 ~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-------~latgs~Dg~I~iwD~~~-~~~v~~~~~---  584 (711)
                      .+..|+....++--|++.|+.+..+..|..-  .|.|.|...       .-++|-++..|.-.|-+- |+.+.....   
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY  559 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY  559 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence            3445556667777888899988888766543  677777432       234555566666666543 333332221   


Q ss_pred             -CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        585 -HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       585 -h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                       .+....|..- ....|+|+|+..|-|++||--.-+.-..+.+.+..|..+..+.+|+++++.+ ...+.+-|+.-
T Consensus       560 ~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~i  633 (776)
T COG5167         560 KTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVPI  633 (776)
T ss_pred             ccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEeccc
Confidence             1122223322 2345899999999999999544344455667788899999999999888766 45787888753

>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]

Probab=92.38  E-value=0.13  Score=60.61  Aligned_cols=11  Identities=18%  Similarity=0.193  Sum_probs=5.1

Q ss_pred             HHHHHHHHHhh
Q psy14440         91 TLITMLKLLRQ  101 (711)
Q Consensus        91 ~~~~v~~yl~k  101 (711)
                      .+.+|.+.|..
T Consensus        41 ~~~~~g~~~~~   51 (2365)
T COG5178          41 QLSIVGDILGH   51 (2365)
T ss_pred             cHHHhhhhhhh
Confidence            44455554443

>KOG4590|consensus

Probab=92.31  E-value=0.29  Score=53.12  Aligned_cols=12  Identities=25%  Similarity=0.196  Sum_probs=5.4

Q ss_pred             CCCCCCChhHHH
Q psy14440         82 QSGKAPDKNTLI   93 (711)
Q Consensus        82 ~~~~~~~~~~~~   93 (711)
                      +.+-++.+..++
T Consensus       201 ~~~~~~~~~~~~  212 (409)
T KOG4590|consen  201 PLGGARQKQSKQ  212 (409)
T ss_pred             cccccccccccc
Confidence            334455554433

>KOG3616|consensus

Probab=92.00  E-value=4.6  Score=46.40  Aligned_cols=326  Identities=10%  Similarity=0.108  Sum_probs=0.0

Q ss_pred             CCceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccc--------cccccCCcEEEEEe
Q psy14440        375 LPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQD--------IEMECDDILVRIMD  446 (711)
Q Consensus       375 lps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~--------l~~~~~d~~i~i~d  446 (711)
                      +-...+.........++++.-+|.|+-++.|..||.|++|++.......+........        +.+...|..+.-|.
T Consensus         2 ikt~~~s~~~k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~   81 (1636)
T KOG3616|consen    2 IKTFDCSRDPKEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWK   81 (1636)
T ss_pred             CccccccCCccccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheee


Q ss_pred             cCC----------------------CeeEEEeecccCCEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCeEEEEEe
Q psy14440        447 ERN----------------------AETTRTLVGHEGPVRKLSFSP-----DRSLLLSCSQDNTIRLWSLLLWRCLVVYK  499 (711)
Q Consensus       447 ~~~----------------------~~~~~~l~~h~~~V~~l~fsp-----dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~  499 (711)
                      .+.                      ..-......-.|.|..+..+-     .+++=++--.-..|.+-|+.+++......
T Consensus        82 ~dgvvqqqfdyndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s  161 (1636)
T KOG3616|consen   82 EDGVVQQQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLIS  161 (1636)
T ss_pred             ccCcchhhccccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeee


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEE--------
Q psy14440        500 GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLW--------  571 (711)
Q Consensus       500 ~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iw--------  571 (711)
                      ...-.|-.+.+-...+|++.-+ ..++.+-|+++.+....--...+.-...-|.-+...++.....-++.-|        
T Consensus       162 ~~g~aidelkilgkdryli~~t-s~siii~d~es~rfsei~wqgsgg~ekfffd~~n~cli~nageltlveyg~d~slg~  240 (1636)
T KOG3616|consen  162 HKGLAIDELKILGKDRYLIAHT-SESIIIADLESNRFSEIAWQGSGGHEKFFFDFENCCLIFNAGELTLVEYGNDDSLGS  240 (1636)
T ss_pred             cCCcchhhhhhccccceEEeec-cccEEEeecccchhhhhhcccCCCcceeeeecCcEEEEEecCeeEEEEecCCCcchh


Q ss_pred             ---------------------------------------ECCCCcEEEE-------------------------------
Q psy14440        572 ---------------------------------------DCVTGSHVRL-------------------------------  581 (711)
Q Consensus       572 ---------------------------------------D~~~~~~v~~-------------------------------  581 (711)
                                                             |+++|+....                               
T Consensus       241 vrte~~nphlisvqike~~qksygrnfdse~n~~~a~~~di~tgqicvfsdflqrrtssvffiikakakifndlqlphi~  320 (1636)
T KOG3616|consen  241 VRTEFMNPHLISVQIKEACQKSYGRNFDSEDNKKLAEHIDIKTGQICVFSDFLQRRTSSVFFIIKAKAKIFNDLQLPHIA  320 (1636)
T ss_pred             hhhhhcCceeeehHHHHHHHHhhCCCCCcchhhhHHHHhccccCceeeehhhhhhccccceeeehhhhhhcccccCccee


Q ss_pred             ------------eeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC
Q psy14440        582 ------------LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQD  649 (711)
Q Consensus       582 ------------~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D  649 (711)
                                  +..|.+.|.-+..+..+..|.--...-.+.++|+.+.+....+..    .+-+.|-|-+..|+.-+.|
T Consensus       321 ipvdli~g~~~~~inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmilnf----csymqwvp~sdvivaqn~d  396 (1636)
T KOG3616|consen  321 IPVDLIGGQNEGFINHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMILNF----CSYMQWVPGSDVIVAQNGD  396 (1636)
T ss_pred             eeeecccCcccccccccccccceeccchhhhhhcccccceeEEEEcccchHHHHHHH----hhhheeccCcceEEecCCC


Q ss_pred             CcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee-CC
Q psy14440        650 CSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR-GP  711 (711)
Q Consensus       650 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-Ga  711 (711)
                       .++||---...+....-.+...-..-.+.......+.     ..++..|++.-|+.++- |+
T Consensus       397 -nl~iwyn~d~peqvt~~kikgdv~~l~r~~~kteviv-----~e~takvayeld~~~iefga  453 (1636)
T KOG3616|consen  397 -NLCIWYNIDAPEQVTMFKIKGDVEALERDADKTEVIV-----MEGTAKVAYELDEGLIEFGA  453 (1636)
T ss_pred             -ceEEEecCCcchhheeeEecccchhhhcCCCceeEEE-----eecceeEEEEecCcceeccc

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=91.98  E-value=13  Score=42.29  Aligned_cols=173  Identities=14%  Similarity=0.024  Sum_probs=86.8

Q ss_pred             CCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCC---eeEEEEcCCCC
Q psy14440        481 DNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSD---VDCVQFHPNSN  557 (711)
Q Consensus       481 Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~---V~~v~~sp~~~  557 (711)
                      .+.+.++|.. |.....+.........+...++|++++..+  +.++.+|.. |+.+.........   -..+..-|||+
T Consensus       127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn  202 (477)
T PF05935_consen  127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGN  202 (477)
T ss_dssp             EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred             CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCC
Confidence            3445555543 444333332211111156677887776555  788888886 4555544322211   34677789999


Q ss_pred             EEEEEEc-------------CCcEEEEECCCCcEEEEee--CC----C---------------------CCeEEEEEec-
Q psy14440        558 YVATGSS-------------DRTIRLWDCVTGSHVRLLT--GH----K---------------------APVYALSFSV-  596 (711)
Q Consensus       558 ~latgs~-------------Dg~I~iwD~~~~~~v~~~~--~h----~---------------------~~I~~la~sp-  596 (711)
                      +|+.+..             .-.|..+| .+|+.+..+.  .|    .                     ..++++.+.+ 
T Consensus       203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~  281 (477)
T PF05935_consen  203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS  281 (477)
T ss_dssp             EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred             EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence            9998872             12366667 7777766532  11    0                     2488999998 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEE--------E--------------EEEeCCCCEEEEEeCCC---c
Q psy14440        597 CGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVR--------A--------------LCFSRDGNILASSGQDC---S  651 (711)
Q Consensus       597 dg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~--------s--------------l~fspdg~~Lasgs~Dg---~  651 (711)
                      ++.+|+|+-.-..|...|.++++....+..|.+.-.        -              ..|. -|++-+.--.+|   .
T Consensus       282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~-~gQH~~~~~~~g~~~~  360 (477)
T PF05935_consen  282 DDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWF-WGQHTAHLIPDGPQGN  360 (477)
T ss_dssp             TTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS-----SS-EEEEE-TTS---S
T ss_pred             CCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCccc-ccccceEEcCCCCeEE
Confidence            666666665566899999999998888866542110        0              1111 245566666677   8


Q ss_pred             EEEEeCCC
Q psy14440        652 VKLWDFAK  659 (711)
Q Consensus       652 V~iWdl~~  659 (711)
                      |.++|=..
T Consensus       361 l~vFDNg~  368 (477)
T PF05935_consen  361 LLVFDNGN  368 (477)
T ss_dssp             EEEEE--T
T ss_pred             EEEEECCC
Confidence            88888443

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.98  E-value=35  Score=41.23  Aligned_cols=156  Identities=14%  Similarity=0.178  Sum_probs=96.3

Q ss_pred             cccCCEEEEEEc---C----CCCEEEEEeCCCeEEEEECC------C---------CeEEEEEec---CCCCEEEEEEcC
Q psy14440        458 GHEGPVRKLSFS---P----DRSLLLSCSQDNTIRLWSLL------L---------WRCLVVYKG---HGHPVWDIKFSP  512 (711)
Q Consensus       458 ~h~~~V~~l~fs---p----dg~~L~s~s~Dg~V~iwdl~------t---------~~~~~~~~~---h~~~V~~v~~sp  512 (711)
                      .-..+|..|+|.   .    ..++|++= ....+.|+...      .         ...+..+..   .+.+..+|+|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            346788888887   2    22355544 34456666611      1         122333332   245778999999


Q ss_pred             -CCCEEEEEECCCeEEEEECCCC-----ceeEEeecCCC----------CeeEEEEcCCCCEEEEEEcCCcEEEEECCCC
Q psy14440        513 -HGYYFASAGHDRMARLWATDSY-----HPLRLFVGHYS----------DVDCVQFHPNSNYVATGSSDRTIRLWDCVTG  576 (711)
Q Consensus       513 -~g~~l~sgs~Dg~i~lwd~~~~-----~~~~~~~~h~~----------~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~  576 (711)
                       +...||+....|...||++..+     ..++....+.+          .-..|.|..+.+.|++++ ...+.++|+.+.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCC
Confidence             5569999999999999999211     11111111222          234788988888888776 567899999887


Q ss_pred             cEEE-Ee-eCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCC
Q psy14440        577 SHVR-LL-TGHKAPVYALSFSVC--GRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       577 ~~v~-~~-~~h~~~I~~la~spd--g~~Lasgs~Dg~I~iwDl~s  617 (711)
                      .... .. ......|..+.-+++  +..++..+  ..|...|+..
T Consensus       235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~  277 (765)
T PF10214_consen  235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS  277 (765)
T ss_pred             CccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence            6633 22 234567888888876  33333332  4687778776

These proteins are found in fungi.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.71  E-value=5  Score=46.99  Aligned_cols=110  Identities=12%  Similarity=0.155  Sum_probs=73.0

Q ss_pred             eeEEEEcC--CCCEEEEEEcCCcEEEEECCC-------C----c---------EEEEeeCCCCCeEEEEEe--cCCCEEE
Q psy14440        547 VDCVQFHP--NSNYVATGSSDRTIRLWDCVT-------G----S---------HVRLLTGHKAPVYALSFS--VCGRFLA  602 (711)
Q Consensus       547 V~~v~~sp--~~~~latgs~Dg~I~iwD~~~-------~----~---------~v~~~~~h~~~I~~la~s--pdg~~La  602 (711)
                      |+.|....  +...|+.|.+||.|.+|.+.+       .    .         +...+. -....++++++  ...++||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence            44444333  456788999999999997521       0    0         111122 34578899998  7888999


Q ss_pred             EEeCCCcEEEEECCCC--eEEE-EeeCCCCCEEEEEEeCCC---C---EEEEEeCCCcEEEEeC
Q psy14440        603 SAGGDGNVHMWDLSNG--HLLT-LLTGHTDVVRALCFSRDG---N---ILASSGQDCSVKLWDF  657 (711)
Q Consensus       603 sgs~Dg~I~iwDl~sg--~~i~-~l~~h~~~V~sl~fspdg---~---~Lasgs~Dg~V~iWdl  657 (711)
                      +++....|.||-....  +... .-..|...|-+|+|-++.   .   .|++++-.|.|.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            9988888888865432  2111 111245668899997643   2   7888899999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=91.62  E-value=8.4  Score=42.87  Aligned_cols=31  Identities=16%  Similarity=0.383  Sum_probs=25.4

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        629 DVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       629 ~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3488999998889999999999999999986

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.39  E-value=12  Score=40.22  Aligned_cols=155  Identities=15%  Similarity=0.200  Sum_probs=92.4

Q ss_pred             CCEEEEEEcCCCCEEEEEECCCe------EEEEECCC----CceeE-----EeecC--------CCCeeEEEEcCCCCEE
Q psy14440        503 HPVWDIKFSPHGYYFASAGHDRM------ARLWATDS----YHPLR-----LFVGH--------YSDVDCVQFHPNSNYV  559 (711)
Q Consensus       503 ~~V~~v~~sp~g~~l~sgs~Dg~------i~lwd~~~----~~~~~-----~~~~h--------~~~V~~v~~sp~~~~l  559 (711)
                      +.+..+.+.+++..+++.+.+|.      +..+.+..    ...+.     .+...        ..+..+|++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            45677888865666777777777      55554433    11111     11111        1256688887788777


Q ss_pred             EEEEcC------CcEEEEECCCCcEEEEee---------------CCCCCeEEEEEecCCCEEEEEeC-----CC-----
Q psy14440        560 ATGSSD------RTIRLWDCVTGSHVRLLT---------------GHKAPVYALSFSVCGRFLASAGG-----DG-----  608 (711)
Q Consensus       560 atgs~D------g~I~iwD~~~~~~v~~~~---------------~h~~~I~~la~spdg~~Lasgs~-----Dg-----  608 (711)
                      ++.-.+      ..|+.+|.. |+..+.+.               ..+...-+++++++|+.|+++..     |+     
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            776666      778888866 66554441               13456889999999997666543     22     


Q ss_pred             ------cEEEEECCC-CeEEEE----eeC-----CCCCEEEEEEeCCCCEEEEEe-----CCCcEEEEeCC
Q psy14440        609 ------NVHMWDLSN-GHLLTL----LTG-----HTDVVRALCFSRDGNILASSG-----QDCSVKLWDFA  658 (711)
Q Consensus       609 ------~I~iwDl~s-g~~i~~----l~~-----h~~~V~sl~fspdg~~Lasgs-----~Dg~V~iWdl~  658 (711)
                            .|..||..+ ++....    +..     ....|..+.+-+++++|+.==     ....++|+.+.
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence                  244456554 322222    222     346789999999999776522     23455665544

>KOG4672|consensus

Probab=91.36  E-value=0.98  Score=48.05  Aligned_cols=11  Identities=36%  Similarity=0.558  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHH
Q psy14440        144 LYEDAYQDLKK  154 (711)
Q Consensus       144 ~~~~~~~~l~~  154 (711)
                      .-+++|..|-+
T Consensus       471 tkDDaY~~FMk  481 (487)
T KOG4672|consen  471 TKDDAYNAFMK  481 (487)
T ss_pred             cchHHHHHHHH
Confidence            45566665443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.27  E-value=5.5  Score=47.25  Aligned_cols=73  Identities=23%  Similarity=0.292  Sum_probs=48.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEECCCeEEEEECCC---------Cce---eEEe--------ecCCCCeeEEEEcCC---CCE
Q psy14440        502 GHPVWDIKFSPHGYYFASAGHDRMARLWATDS---------YHP---LRLF--------VGHYSDVDCVQFHPN---SNY  558 (711)
Q Consensus       502 ~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~---------~~~---~~~~--------~~h~~~V~~v~~sp~---~~~  558 (711)
                      ...|..|.++++|++++..|..|.+.+.=.+.         ++.   .+++        ..+...|..+.|||.   +.+
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            45688899999999999998877555442221         111   1111        123446778888884   577


Q ss_pred             EEEEEcCCcEEEEECC
Q psy14440        559 VATGSSDRTIRLWDCV  574 (711)
Q Consensus       559 latgs~Dg~I~iwD~~  574 (711)
                      |++-++|+++|+||+.
T Consensus       164 l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEEecCCEEEEEecC
Confidence            7777788888888874

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=91.23  E-value=19  Score=41.91  Aligned_cols=161  Identities=13%  Similarity=0.111  Sum_probs=87.0

Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE--EEEEec-CCC------CEEEEEEcCCCCEEEEEEC-C---CeE
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC--LVVYKG-HGH------PVWDIKFSPHGYYFASAGH-D---RMA  526 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~--~~~~~~-h~~------~V~~v~~sp~g~~l~sgs~-D---g~i  526 (711)
                      .+.|.++.|..+++.+++...+|.|.+||...+..  +...+. +..      -|..........++++.+. +   -..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            56799999999999999999999999999932221  111111 111      1111111111234444433 2   346


Q ss_pred             EEEEC--CCCceeEEee---cCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEeeCC-----C-CCeEEEEE
Q psy14440        527 RLWAT--DSYHPLRLFV---GHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLTGH-----K-APVYALSF  594 (711)
Q Consensus       527 ~lwd~--~~~~~~~~~~---~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h-----~-~~I~~la~  594 (711)
                      +++.+  ++.. +..+.   .+........|.- +|.....  .+++|.+|++-+.+..+++.-.     . ..+.++.-
T Consensus       209 kL~~l~~~~~~-~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~  285 (670)
T PF10395_consen  209 KLISLSNESSS-IFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP  285 (670)
T ss_pred             EEEEeccCCcc-eEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence            67777  2222 22221   2222223333333 3433333  6889999999888766665421     1 23444432


Q ss_pred             ecCCCEEEEEeCCCcEEEEECCCCeEEEEee
Q psy14440        595 SVCGRFLASAGGDGNVHMWDLSNGHLLTLLT  625 (711)
Q Consensus       595 spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~  625 (711)
                      -...+.|.+.  ++.|++.|+.-...+.++.
T Consensus       286 ~s~nRvLLs~--~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  286 PSPNRVLLSV--NNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             CCCCeEEEEc--CCEEEEEeehhhhhhhhhh
Confidence            2233444433  4689999987666655554

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG2280|consensus

Probab=91.05  E-value=18  Score=42.18  Aligned_cols=40  Identities=15%  Similarity=0.111  Sum_probs=34.1

Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee
Q psy14440        544 YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT  583 (711)
Q Consensus       544 ~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~  583 (711)
                      .+.+..+..+++.++|+.-..+|.|.+-++...++...+.
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            4567888999999999999999999999988777766665

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.05  E-value=24  Score=37.57  Aligned_cols=135  Identities=9%  Similarity=0.061  Sum_probs=65.0

Q ss_pred             CCCEEEEEECC-----CeEEEEECCCCce---eEEeecCCCC--eeEEEEcCCCCEEEEEEc-----CCcEEEEECCCCc
Q psy14440        513 HGYYFASAGHD-----RMARLWATDSYHP---LRLFVGHYSD--VDCVQFHPNSNYVATGSS-----DRTIRLWDCVTGS  577 (711)
Q Consensus       513 ~g~~l~sgs~D-----g~i~lwd~~~~~~---~~~~~~h~~~--V~~v~~sp~~~~latgs~-----Dg~I~iwD~~~~~  577 (711)
                      ++..++.|+.+     ..+..||+.+..-   ...+..-...  -.+++.. +++..+.|+.     ...+..||..+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            45566777754     3566677765442   1121111111  1222332 4566666653     2358888987654


Q ss_pred             EEE--EeeCCCCCeEEEEEecCCCEEEEEeCCC----cEEEEECCCCeEEE--Eee-CC-CC---CEEEEEEeCCCCEEE
Q psy14440        578 HVR--LLTGHKAPVYALSFSVCGRFLASAGGDG----NVHMWDLSNGHLLT--LLT-GH-TD---VVRALCFSRDGNILA  644 (711)
Q Consensus       578 ~v~--~~~~h~~~I~~la~spdg~~Lasgs~Dg----~I~iwDl~sg~~i~--~l~-~h-~~---~V~sl~fspdg~~La  644 (711)
                      =..  .+.. .......+..-++++.+.|+.++    .+.+||..+.+-..  .+. ++ ..   ...+++ ..++.+++
T Consensus       151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~-~~~~~iyv  228 (323)
T TIGR03548       151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIK-INESLLLC  228 (323)
T ss_pred             eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEE-ECCCEEEE
Confidence            222  1211 11122233344677777787654    35688987765322  111 00 00   111122 23577888


Q ss_pred             EEeCCC
Q psy14440        645 SSGQDC  650 (711)
Q Consensus       645 sgs~Dg  650 (711)
                      .||.++
T Consensus       229 ~GG~~~  234 (323)
T TIGR03548       229 IGGFNK  234 (323)
T ss_pred             ECCcCH
Confidence            888764

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG2391|consensus

Probab=91.00  E-value=1.5  Score=45.85  Aligned_cols=17  Identities=18%  Similarity=0.192  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHhhhc
Q psy14440        144 LYEDAYQDLKKFIENSL  160 (711)
Q Consensus       144 ~~~~~~~~l~~~v~~~l  160 (711)
                      .....-.-|++|++..|
T Consensus       264 ~L~~niDIL~~k~~eal  280 (365)
T KOG2391|consen  264 SLQKNIDILKSKVREAL  280 (365)
T ss_pred             HHHhhhHHHHHHHHHHH
Confidence            34455667888888744

>KOG4849|consensus

Probab=90.97  E-value=0.97  Score=46.98  Aligned_cols=6  Identities=17%  Similarity=0.556  Sum_probs=2.8

Q ss_pred             hHHHHH
Q psy14440        107 TEEQLK  112 (711)
Q Consensus       107 ~e~~l~  112 (711)
                      +|+-|.
T Consensus       358 SeAEFE  363 (498)
T KOG4849|consen  358 SEAEFE  363 (498)
T ss_pred             hHHHHH
Confidence            444444

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=90.97  E-value=1.2  Score=51.89  Aligned_cols=19  Identities=11%  Similarity=0.085  Sum_probs=11.4

Q ss_pred             HHHHHHhhCCCchhHHHHHhh
Q psy14440         94 TMLKLLRQYNLRGTEEQLKKE  114 (711)
Q Consensus        94 ~v~~yl~k~g~~~~e~~l~~e  114 (711)
                      .|+++++++  .-+.++|..+
T Consensus       473 ~~~~~~~~~--~~~~~~~~~~  491 (585)
T PRK14950        473 QILRDVPPR--SPAVQALLSS  491 (585)
T ss_pred             HHHHHHhhc--CHHHHHHHhC
Confidence            688888865  3444444434

>KOG2659|consensus

Probab=90.84  E-value=0.53  Score=46.89  Aligned_cols=164  Identities=16%  Similarity=0.184  Sum_probs=100.4

Q ss_pred             HHHHHHHhhCCCchhHHHHHhhhccCCCCCCCCCccccccccccccCCChhHHHHHHHHHHHHHhhhcccchhhhhhhhH
Q psy14440         93 ITMLKLLRQYNLRGTEEQLKKEINVNDLGIDPNDSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLY  172 (711)
Q Consensus        93 ~~v~~yl~k~g~~~~e~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~  172 (711)
                      ..|++||--.||..+-+.|..|+++.........-+-...+-....+|   ..+.|...+.+---.-||.-    ..|.|
T Consensus        31 ~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G---~Ie~Aie~in~l~PeiLd~n----~~l~F  103 (228)
T KOG2659|consen   31 RLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEG---QIEEAIEKVNQLNPEILDTN----RELFF  103 (228)
T ss_pred             HHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhc---cHHHHHHHHHHhChHHHccc----hhHHH
Confidence            379999999999999999999998765300000000000000001111   23344444433322222221    12677


Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHhcCCCcc---hHHHHHHHHhcCCCcccccccHHHHHhhcCccEEEeCHHHHHHHH
Q psy14440        173 PVLVHMYIELVYNGHEHQATEMLHKHLMDHEP---HYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLK  249 (711)
Q Consensus       173 p~f~~~yl~lv~~~~~~~a~~f~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~v~~s~~~~~~l~  249 (711)
                      =+-..-.++||..|+.++|-+|+.....-+..   .+.+.+++.-.+.--+.-+..+.+. +-...||-++-...-..++
T Consensus       104 ~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~-l~~~s~R~kvA~~vN~aiL  182 (228)
T KOG2659|consen  104 HLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAE-LLSQSLRQKVASEVNSAIL  182 (228)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHH-HHHHHHHHHHHHHHHHHHH
Confidence            77888899999999999999999986544322   4666676666555555445555555 4456677777777778888


Q ss_pred             HHHhhcChhhHHHHh
Q psy14440        250 RHLQEKKHTVLLNIV  264 (711)
Q Consensus       250 ~~l~~~~~~~~~~i~  264 (711)
                      .+.+.....-+..|+
T Consensus       183 ~~~~~~~~~~l~~ll  197 (228)
T KOG2659|consen  183 ASQEHESEPKLPFLL  197 (228)
T ss_pred             HHhcccccchHHHHH
Confidence            888776666666666

>KOG1830|consensus

Probab=90.78  E-value=0.61  Score=49.70  Aligned_cols=10  Identities=30%  Similarity=0.594  Sum_probs=4.2

Q ss_pred             CCCCCCCCCC
Q psy14440          9 DDPPQESFHS   18 (711)
Q Consensus         9 ~~~~~~~~~~   18 (711)
                      +-+|+.--+.
T Consensus       270 ~~pp~~~~~~  279 (518)
T KOG1830|consen  270 HHPPQPPVMP  279 (518)
T ss_pred             CCCCCCCccc
Confidence            3444444433

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.76  E-value=16  Score=40.39  Aligned_cols=144  Identities=12%  Similarity=0.089  Sum_probs=82.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce----
Q psy14440        463 VRKLSFSPDRSLLLSCSQDNTIRLWSLLL--WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP----  536 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s~Dg~V~iwdl~t--~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~----  536 (711)
                      ...+..++|+.+++.+..-..++-||--.  |+.+.  ......+..+.|.+++..++++ .+|.+ +|..+.++.    
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~--~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN--RASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEec--CCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence            44556677777666655433233344321  22222  2235568899999888777665 45654 344544432    


Q ss_pred             -eEEeec--CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee---CCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy14440        537 -LRLFVG--HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT---GHKAPVYALSFSVCGRFLASAGGDGNV  610 (711)
Q Consensus       537 -~~~~~~--h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~---~h~~~I~~la~spdg~~Lasgs~Dg~I  610 (711)
                       ......  ....+..+.|..++..+++| ..|.+.... ..|+.-....   .-....+.+.|..+++.+++| .+|.|
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i  393 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL  393 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence             222211  12348889998777666555 467665553 4555433322   234578899998777766655 66777


Q ss_pred             EEE
Q psy14440        611 HMW  613 (711)
Q Consensus       611 ~iw  613 (711)
                      .-|
T Consensus       394 l~~  396 (398)
T PLN00033        394 LRY  396 (398)
T ss_pred             EEe
Confidence            655

>KOG2377|consensus

Probab=90.63  E-value=7.8  Score=42.34  Aligned_cols=139  Identities=9%  Similarity=0.028  Sum_probs=88.0

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEE-ecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeE--
Q psy14440        464 RKLSFSPDRSLLLSCSQDNTIRLWSLLLW--RCLVVY-KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLR--  538 (711)
Q Consensus       464 ~~l~fspdg~~L~s~s~Dg~V~iwdl~t~--~~~~~~-~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~--  538 (711)
                      +++-|.. .+.++.|...|.+.=|-+...  .....+ ....++|.++.||+|.+.+|+--.+++|.+++....+...  
T Consensus        26 ngvFfDD-aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDD-ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeecc-CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            4455543 333444444455655654321  111112 2245699999999999999999999999999884333222  


Q ss_pred             --EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-CcEEEEeeCCCCCeEEEEEecCCCEEEEEe
Q psy14440        539 --LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT-GSHVRLLTGHKAPVYALSFSVCGRFLASAG  605 (711)
Q Consensus       539 --~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~-~~~v~~~~~h~~~I~~la~spdg~~Lasgs  605 (711)
                        ........|...+|+.+ .-+|..+..| +.+|-+.. .+.+|..+.|+..|+-..|.++.+.+..++
T Consensus       105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence              22233455889999865 5566666444 66665543 345777788888899999988877654443

>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]

Probab=90.53  E-value=0.19  Score=59.23  Aligned_cols=14  Identities=21%  Similarity=0.332  Sum_probs=8.2

Q ss_pred             hHHHHHHHHHhhCC
Q psy14440         90 NTLITMLKLLRQYN  103 (711)
Q Consensus        90 ~~~~~v~~yl~k~g  103 (711)
                      ..+..-+|||+.++
T Consensus       865 kilvLalE~lk~~y  878 (2365)
T COG5178         865 KILVLALEYLKSKY  878 (2365)
T ss_pred             hhhhhhHHHHHhhc
Confidence            34445667776654

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.21  E-value=27  Score=36.73  Aligned_cols=162  Identities=13%  Similarity=0.190  Sum_probs=94.2

Q ss_pred             eEEEEECCCCeEEEEEecC------CCCEEEEEEcCC------CCEEEEEECCCeEEEEECCCCceeEEeecCC------
Q psy14440        483 TIRLWSLLLWRCLVVYKGH------GHPVWDIKFSPH------GYYFASAGHDRMARLWATDSYHPLRLFVGHY------  544 (711)
Q Consensus       483 ~V~iwdl~t~~~~~~~~~h------~~~V~~v~~sp~------g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~------  544 (711)
                      .|.+||+.+.+.++++.-.      .+.+.++.+...      +..+++-+..+-+.++|+.+++..|.+..+.      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            6899999999988887532      456777877662      2233444455689999999988776654322      


Q ss_pred             -------------CCeeEEEEcC---CCCEEEEEEcCCcEEEEECCC-----C---------cEEEEeeCCC-CCeEEEE
Q psy14440        545 -------------SDVDCVQFHP---NSNYVATGSSDRTIRLWDCVT-----G---------SHVRLLTGHK-APVYALS  593 (711)
Q Consensus       545 -------------~~V~~v~~sp---~~~~latgs~Dg~I~iwD~~~-----~---------~~v~~~~~h~-~~I~~la  593 (711)
                                   ..+..++.++   ++++|..+.-.+. ++|.+.+     .         ..+..+ |.+ +....++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~  192 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMA  192 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceec-cccCCCCceEE
Confidence                         1244555544   4455555443221 2222211     1         112222 222 3566788


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCC----CeEEEEeeCC--CCCEEEEEEeC--CCCEEEEE
Q psy14440        594 FSVCGRFLASAGGDGNVHMWDLSN----GHLLTLLTGH--TDVVRALCFSR--DGNILASS  646 (711)
Q Consensus       594 ~spdg~~Lasgs~Dg~I~iwDl~s----g~~i~~l~~h--~~~V~sl~fsp--dg~~Lasg  646 (711)
                      ++++|.++++--..+.|..||..+    ..........  -..+.++.+..  +|.+.+.+
T Consensus       193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            999999988888999999999876    1221122222  35788999988  77665554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=89.94  E-value=33  Score=37.44  Aligned_cols=38  Identities=18%  Similarity=0.254  Sum_probs=19.3

Q ss_pred             EEEEECCCCeEE--EEeeCCCCCEEEEEEeCCCCEEEEEeCC
Q psy14440        610 VHMWDLSNGHLL--TLLTGHTDVVRALCFSRDGNILASSGQD  649 (711)
Q Consensus       610 I~iwDl~sg~~i--~~l~~h~~~V~sl~fspdg~~Lasgs~D  649 (711)
                      +.+||..+.+-.  ..+..-..  ...+..-++++++.||..
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~r~--~~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQGLA--YGVSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCCcccccCcCCCCcc--ceEEEEeCCEEEEEcCCC
Confidence            457888765432  22211111  122334467788888754

>KOG1922|consensus

Probab=89.94  E-value=0.82  Score=55.70  Aligned_cols=10  Identities=0%  Similarity=-0.104  Sum_probs=4.1

Q ss_pred             HHHHHhhCCC
Q psy14440         95 MLKLLRQYNL  104 (711)
Q Consensus        95 v~~yl~k~g~  104 (711)
                      |..-+..-++
T Consensus       413 ~w~~~~~~~~  422 (833)
T KOG1922|consen  413 VWSEVDSSSS  422 (833)
T ss_pred             CCCccccCCc
Confidence            3333444444

>KOG4460|consensus

Probab=89.78  E-value=4  Score=45.21  Aligned_cols=77  Identities=17%  Similarity=0.210  Sum_probs=52.4

Q ss_pred             CCEEEEEEcCCCCEEEEEECCCeEEEEE---------CCCCceeEEe----------e-cCCCCeeEEEEcCCC---CEE
Q psy14440        503 HPVWDIKFSPHGYYFASAGHDRMARLWA---------TDSYHPLRLF----------V-GHYSDVDCVQFHPNS---NYV  559 (711)
Q Consensus       503 ~~V~~v~~sp~g~~l~sgs~Dg~i~lwd---------~~~~~~~~~~----------~-~h~~~V~~v~~sp~~---~~l  559 (711)
                      ..|..+..++.|..++..|.+|.+.++=         ++.+++..+.          . ...-.+..++|||++   ..|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            3467788899999999999999877653         2233332211          1 111236678999965   678


Q ss_pred             EEEEcCCcEEEEECCCCcEE
Q psy14440        560 ATGSSDRTIRLWDCVTGSHV  579 (711)
Q Consensus       560 atgs~Dg~I~iwD~~~~~~v  579 (711)
                      ..-+.|.+||+||+...+.+
T Consensus       184 ~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEEecCcEEEEEecCCcchh
Confidence            88888999999998654433

>PLN02153 epithiospecifier protein

Probab=89.74  E-value=32  Score=36.94  Aligned_cols=131  Identities=18%  Similarity=0.196  Sum_probs=61.0

Q ss_pred             CCCEEEEEECC-----CeEEEEECCCCc--eeEEeec---CCCC-eeEEEEcCCCCEEEEEEcC-----------CcEEE
Q psy14440        513 HGYYFASAGHD-----RMARLWATDSYH--PLRLFVG---HYSD-VDCVQFHPNSNYVATGSSD-----------RTIRL  570 (711)
Q Consensus       513 ~g~~l~sgs~D-----g~i~lwd~~~~~--~~~~~~~---h~~~-V~~v~~sp~~~~latgs~D-----------g~I~i  570 (711)
                      ++++++.|+.+     ..+.+||..+.+  .+..+..   .... -.+++.. +++.++.|+.+           ..|.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD-ENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE-CCEEEEECCccCCCccCCCcccceEEE
Confidence            45677777753     247778877542  1111100   0111 1222222 45566666643           24778


Q ss_pred             EECCCCcEEEEeeC------CCCCeEEEEEecCCCEEEEEeCC-------------CcEEEEECCCCeEEEEee-C--CC
Q psy14440        571 WDCVTGSHVRLLTG------HKAPVYALSFSVCGRFLASAGGD-------------GNVHMWDLSNGHLLTLLT-G--HT  628 (711)
Q Consensus       571 wD~~~~~~v~~~~~------h~~~I~~la~spdg~~Lasgs~D-------------g~I~iwDl~sg~~i~~l~-~--h~  628 (711)
                      ||..+.+=.. +..      ..... +++ .-++++++.|+.+             ..|.+||+.+.+-...-. +  ..
T Consensus       164 yd~~~~~W~~-l~~~~~~~~~r~~~-~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~  240 (341)
T PLN02153        164 YNIADGKWVQ-LPDPGENFEKRGGA-GFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS  240 (341)
T ss_pred             EECCCCeEee-CCCCCCCCCCCCcc-eEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC
Confidence            8887654221 111      11111 122 2356666655432             468899988765432211 1  11


Q ss_pred             C-CEEEEEEeCCCCEEEEEeC
Q psy14440        629 D-VVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       629 ~-~V~sl~fspdg~~Lasgs~  648 (711)
                      . ...++ ..-++++++.||.
T Consensus       241 ~r~~~~~-~~~~~~iyv~GG~  260 (341)
T PLN02153        241 ARSVFAH-AVVGKYIIIFGGE  260 (341)
T ss_pred             Ccceeee-EEECCEEEEECcc
Confidence            1 11222 2235677888875

>KOG1983|consensus

Probab=89.50  E-value=6  Score=48.80  Aligned_cols=72  Identities=18%  Similarity=0.139  Sum_probs=44.9

Q ss_pred             CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q psy14440        543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL  620 (711)
Q Consensus       543 h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~  620 (711)
                      +...+.|..+...+.. +.+...+.+.+|+.......+.+..     ....++.+|..++++..||.+.+||...|+.
T Consensus       197 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  197 IEYESLQVLYYSPTKI-LIGFNRGLVVIKDRASKYVQSAYLP-----NGQLESRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             cccccceeeeecCCCc-ceeeeeeeeeehhcccccchhhccc-----ccccCccCCceEEEEEecCCEEeeecCCCce
Confidence            4455556555444333 3344466777777544433333322     1112278899999999999999999988755

>PLN02193 nitrile-specifier protein

Probab=89.42  E-value=32  Score=38.96  Aligned_cols=143  Identities=15%  Similarity=0.102  Sum_probs=70.6

Q ss_pred             CCCEEEEEECC-----CeEEEEECCCCceeEEeec-----CCCCeeEEEEcCCCCEEEEEEcCC-----cEEEEECCCCc
Q psy14440        513 HGYYFASAGHD-----RMARLWATDSYHPLRLFVG-----HYSDVDCVQFHPNSNYVATGSSDR-----TIRLWDCVTGS  577 (711)
Q Consensus       513 ~g~~l~sgs~D-----g~i~lwd~~~~~~~~~~~~-----h~~~V~~v~~sp~~~~latgs~Dg-----~I~iwD~~~~~  577 (711)
                      +++.++.|+.+     ..+.+||+.+.+= ..+..     ....-.+++.. +++.++.|+.++     .+..||+.+.+
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W-~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~  305 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEW-KLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKK  305 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEE-EEcCcCCCCCCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCE
Confidence            45566777654     3577788776431 11111     01111222222 455666666443     46778877654


Q ss_pred             EEEEee-----CCCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCeEEEEeeC---CCC-CEEEEEEeCCCCEEE
Q psy14440        578 HVRLLT-----GHKAPVYALSFSVCGRFLASAGGD----GNVHMWDLSNGHLLTLLTG---HTD-VVRALCFSRDGNILA  644 (711)
Q Consensus       578 ~v~~~~-----~h~~~I~~la~spdg~~Lasgs~D----g~I~iwDl~sg~~i~~l~~---h~~-~V~sl~fspdg~~La  644 (711)
                      -...-.     ........+  .-+++.++.|+.+    ..|.+||+.+.+-...-..   ... ...++ ..-++++++
T Consensus       306 W~~~~~~~~~~~~R~~~~~~--~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv  382 (470)
T PLN02193        306 WFHCSTPGDSFSIRGGAGLE--VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVI  382 (470)
T ss_pred             EEeCCCCCCCCCCCCCcEEE--EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEE
Confidence            221110     011111122  2357777777755    4689999988664332110   111 11222 233577888


Q ss_pred             EEeCC--------------CcEEEEeCCCC
Q psy14440        645 SSGQD--------------CSVKLWDFAKL  660 (711)
Q Consensus       645 sgs~D--------------g~V~iWdl~~~  660 (711)
                      .||.+              +.+.+||+.+.
T Consensus       383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~  412 (470)
T PLN02193        383 FGGEIAMDPLAHVGPGQLTDGTFALDTETL  412 (470)
T ss_pred             ECCccCCccccccCccceeccEEEEEcCcC
Confidence            88853              24677777653

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=89.37  E-value=1.3  Score=51.31  Aligned_cols=90  Identities=13%  Similarity=0.136  Sum_probs=0.0

Q ss_pred             CCCcCCCCCCCCCCCCcccC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCC
Q psy14440          5 PSLMDDPPQESFHSVPIIQQ--TLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPSPQPPAQPQQVPSPY-----HTPPPS   77 (711)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~   77 (711)
                      |..+..+|..-+...|+--+  ++.++++.+++|++|...++++++++|+.+..+.++++++++.+.++     |.|++.
T Consensus       398 p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  477 (562)
T TIGR01628       398 PPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDL  477 (562)
T ss_pred             CCccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCcccccccccccCCCcCCCccccCCCCCccc


Q ss_pred             CCCCCCCCCCChhHHHH
Q psy14440         78 QTSKQSGKAPDKNTLIT   94 (711)
Q Consensus        78 ~~~~~~~~~~~~~~~~~   94 (711)
                      |++.++.+++..+.+.+
T Consensus       478 ~~~~~~~~~~~~~~~~~  494 (562)
T TIGR01628       478 PQPQSTASQGGQNKKLA  494 (562)
T ss_pred             ccccCCccccccchhHH

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>PRK10263 DNA translocase FtsK; Provisional

Probab=89.33  E-value=0.87  Score=56.13  Aligned_cols=86  Identities=27%  Similarity=0.329  Sum_probs=0.0

Q ss_pred             CcCCCCCCCCCC-------------CCcccCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------
Q psy14440          7 LMDDPPQESFHS-------------VPIIQQTLSPQQP-PVSPQHQNMMSPIQQHSLSPHTQAPSPQPPAQPQQ------   66 (711)
Q Consensus         7 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   66 (711)
                      |.||+|.+..-+             .|--|+..|.++| |.+..+||.+++.++|.-..|.||..|+|.+++|.      
T Consensus       735 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~yq~P~~~p~~~~~yqqp~q~~ap~p~~~qP~qp~~p~p~y~qp~qP~~~~  814 (1355)
T PRK10263        735 LLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQ  814 (1355)
T ss_pred             hhccCCCCCCcCCCCCccccccccCCcccccCCCCCCCCccccccCccCCCCcccccCCCCCCCCCCcccCCCCCCcCcc


Q ss_pred             -----CCCCCCCCCCCCCCCCCCCCCChhHH
Q psy14440         67 -----VPSPYHTPPPSQTSKQSGKAPDKNTL   92 (711)
Q Consensus        67 -----~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (711)
                           +++|-+++|.+++|+.+.-++..++|
T Consensus       815 ~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~  845 (1355)
T PRK10263        815 PQYQQPQQPVAPQPQYQQPQQPVAPQPQDTL  845 (1355)
T ss_pred             ccccccCCCCCCCcccCCCCCCccccccccc

>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein

Probab=89.33  E-value=1.5  Score=48.54  Aligned_cols=79  Identities=22%  Similarity=0.375  Sum_probs=0.0

Q ss_pred             CCCcccCCCCCCCCCCCCC----CCCCCCCCCCCCCC-----CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy14440         18 SVPIIQQTLSPQQPPVSPQ----HQNMMSPIQQHSLS-----PHTQAPSP-QPPAQPQQVPSPYHTPPPSQTSKQSGKAP   87 (711)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (711)
                      .+|.-..++||++.+-.|+    -+|..+..+.-.++     |..++|+| +|+.|+...|.|+.+|+.++.+.|+.++.
T Consensus       181 ~~P~A~~~~pP~~~~~~p~~~~~~~p~~ss~~~~~~~~~~~~p~~~~p~p~~P~ap~~~~P~p~~~P~iq~~~~pp~p~~  260 (582)
T PF03276_consen  181 NIPGASIPPPPSSSSGLPPAASPSAPSASSTPGWRQPRVSYNPFLPPPSPVQPSAPPASIPAPPVPPPIQYVPPPPVPPP  260 (582)
T ss_pred             CCCCCCCCCCCCCcCCCCCCcCCCCCCcccCccccCCccccCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCc


Q ss_pred             Ch----hHHHHHH
Q psy14440         88 DK----NTLITML   96 (711)
Q Consensus        88 ~~----~~~~~v~   96 (711)
                      ..    +-|++|+
T Consensus       261 ~~ViPI~hIRaVi  273 (582)
T PF03276_consen  261 QPVIPIQHIRAVI  273 (582)
T ss_pred             cccccHHHHHhhh

; GO: 0019028 viral capsid

>KOG2247|consensus

Probab=89.30  E-value=0.046  Score=59.36  Aligned_cols=148  Identities=13%  Similarity=0.155  Sum_probs=0.0

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCCCc
Q psy14440        499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS-DRTIRLWDCVTGS  577 (711)
Q Consensus       499 ~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~-Dg~I~iwD~~~~~  577 (711)
                      ..+...-....|.+.+.-++.++.+..+..||-........-  ..+....++|.-++..++.... .+.+.+||+.+..
T Consensus        31 daalv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n--~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey  108 (615)
T KOG2247|consen   31 DAALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELN--PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY  108 (615)
T ss_pred             hhhccccceeeEecCCCceehhhhhhHHHhhhhhcceecccC--CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh


Q ss_pred             EEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC
Q psy14440        578 HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       578 ~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~  648 (711)
                      .-..-.+.+..-.-+.|++.+..++.|...|.+.|++..+.+.+..+-.|...+..++|...+..+..++.
T Consensus       109 tqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd  179 (615)
T KOG2247|consen  109 TQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCD  179 (615)
T ss_pred             HHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcH

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.88  E-value=3.2  Score=41.80  Aligned_cols=74  Identities=15%  Similarity=0.244  Sum_probs=0.0

Q ss_pred             EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-------ee-------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q psy14440        549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRL-------LT-------GHKAPVYALSFSVCGRFLASAGGDGNVHMWD  614 (711)
Q Consensus       549 ~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~-------~~-------~h~~~I~~la~spdg~~Lasgs~Dg~I~iwD  614 (711)
                      ++.+..++++|++.+.+|.+++||+.+++++..       +.       .....|..+.++.+|.-|++-+. |..+.||
T Consensus        15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~   93 (219)
T PF07569_consen   15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYS   93 (219)
T ss_pred             eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEec


Q ss_pred             CCCCeEEEE
Q psy14440        615 LSNGHLLTL  623 (711)
Q Consensus       615 l~sg~~i~~  623 (711)
                      ..-+.-+..
T Consensus        94 ~~L~~W~~v  102 (219)
T PF07569_consen   94 PDLGCWIRV  102 (219)
T ss_pred             cccceeEEe

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=88.78  E-value=48  Score=37.63  Aligned_cols=217  Identities=18%  Similarity=0.197  Sum_probs=0.0

Q ss_pred             CCCCEEEEE---eCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCC
Q psy14440        397 EDVSILAVG---FSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRS  473 (711)
Q Consensus       397 ~dg~~LatG---~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~  473 (711)
                      .+|=+++.+   ...+.+.+.|.                                .|.....+.........+.+.++|.
T Consensus       113 ~~gl~~~~~~~~~~~~~~~~iD~--------------------------------~G~Vrw~~~~~~~~~~~~~~l~nG~  160 (477)
T PF05935_consen  113 EDGLYFVNGNDWDSSSYTYLIDN--------------------------------NGDVRWYLPLDSGSDNSFKQLPNGN  160 (477)
T ss_dssp             TT-EEEEEETT--BEEEEEEEET--------------------------------TS-EEEEE-GGGT--SSEEE-TTS-
T ss_pred             CCcEEEEeCCCCCCCceEEEECC--------------------------------CccEEEEEccCccccceeeEcCCCC


Q ss_pred             EEEEEeCCCeEEEEECCCCeEEEEEecCCCC---EEEEEEcCCCCEEEEEE--------------CCCeEEEEECCCCce
Q psy14440        474 LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP---VWDIKFSPHGYYFASAG--------------HDRMARLWATDSYHP  536 (711)
Q Consensus       474 ~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~---V~~v~~sp~g~~l~sgs--------------~Dg~i~lwd~~~~~~  536 (711)
                      +++..+  +.++.+|+. |+.+..+......   =.++...++|++|+.+.              .|. |..+| .+++.
T Consensus       161 ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~v  235 (477)
T PF05935_consen  161 LLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEV  235 (477)
T ss_dssp             EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-E
T ss_pred             EEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCE


Q ss_pred             eEEee--cCC-------------------------CCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCC
Q psy14440        537 LRLFV--GHY-------------------------SDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAP  588 (711)
Q Consensus       537 ~~~~~--~h~-------------------------~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~  588 (711)
                      +..+.  .|.                         -.++++.+.+ ++.+|+++-.-..|...|.++++....+..+.+.
T Consensus       236 v~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w  315 (477)
T PF05935_consen  236 VWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGW  315 (477)
T ss_dssp             EEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT-
T ss_pred             EEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCC


Q ss_pred             eE-------------------------------EEEEecCC---CEEEEEeCCCc----------------EEEEECCCC
Q psy14440        589 VY-------------------------------ALSFSVCG---RFLASAGGDGN----------------VHMWDLSNG  618 (711)
Q Consensus       589 I~-------------------------------~la~spdg---~~Lasgs~Dg~----------------I~iwDl~sg  618 (711)
                      -.                               ++.+.++|   .+++--...+.                +..|.+...
T Consensus       316 ~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~r~~~~~~~~~~~~~~Sr~v~Y~Ide~  395 (477)
T PF05935_consen  316 NGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNGRGYGQPAYVSPKDNYSRAVEYRIDEN  395 (477)
T ss_dssp             -TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE--TTGGGS--SSCCG-----EEEEEEEETT
T ss_pred             CcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECCCCCCCCCccccccccccceEEEEEecCC


Q ss_pred             ----eEEEEeeC------CCCCEEEEEEeCC-CCEEEEEeCCC
Q psy14440        619 ----HLLTLLTG------HTDVVRALCFSRD-GNILASSGQDC  650 (711)
Q Consensus       619 ----~~i~~l~~------h~~~V~sl~fspd-g~~Lasgs~Dg  650 (711)
                          +.+..+..      .+..+.++.+-++ |++|++.|..|
T Consensus       396 ~~T~~~vw~y~~~~g~~~yS~~~s~aq~l~n~gn~li~~g~~~  438 (477)
T PF05935_consen  396 KMTVEQVWEYGKPRGNEFYSPIVSSAQYLPNKGNTLITSGMAG  438 (477)
T ss_dssp             TTEEEEEEEESGGGGGGG--SS--EEEEETTTTEEEEEEEEET
T ss_pred             CceEEEEEEeCCCCCCCccCCcceeeEEecCCCCEEEEeCccc

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.77  E-value=37  Score=36.35  Aligned_cols=189  Identities=17%  Similarity=0.214  Sum_probs=0.0

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCe------EEEEECCC----------CeEEEEEecCCCCEE-------EEEEcCCCCEE
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNT------IRLWSLLL----------WRCLVVYKGHGHPVW-------DIKFSPHGYYF  517 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~------V~iwdl~t----------~~~~~~~~~h~~~V~-------~v~~sp~g~~l  517 (711)
                      +.+.++.+.+++..+++.|.+|.      +..+++..          ...+........+..       +|++.++|.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE


Q ss_pred             EEEECC------CeEEEEECCCCceeEEe---------------ecCCCCeeEEEEcCCCCEEEEEEcCC----------
Q psy14440        518 ASAGHD------RMARLWATDSYHPLRLF---------------VGHYSDVDCVQFHPNSNYVATGSSDR----------  566 (711)
Q Consensus       518 ~sgs~D------g~i~lwd~~~~~~~~~~---------------~~h~~~V~~v~~sp~~~~latgs~Dg----------  566 (711)
                      ++.-.+      ..|+.++.+ ++.++.+               ........+++++++|+.|+++....          
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc


Q ss_pred             ------cEEEEECC-----CCcEEEEeeC-----CCCCeEEEEEecCCCEEEEEeC-------CCcEEEEECCCC-----
Q psy14440        567 ------TIRLWDCV-----TGSHVRLLTG-----HKAPVYALSFSVCGRFLASAGG-------DGNVHMWDLSNG-----  618 (711)
Q Consensus       567 ------~I~iwD~~-----~~~~v~~~~~-----h~~~I~~la~spdg~~Lasgs~-------Dg~I~iwDl~sg-----  618 (711)
                            .|..||..     ..+....+..     ....|+.+++-+++++|+.=-.       ...|+..|+...     
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~at~~~~  258 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSDATDVPG  258 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEccccccccc


Q ss_pred             --------------eEEEEeeCC---CCCEEEEEEeC--CCCE-EEEEeCCC
Q psy14440        619 --------------HLLTLLTGH---TDVVRALCFSR--DGNI-LASSGQDC  650 (711)
Q Consensus       619 --------------~~i~~l~~h---~~~V~sl~fsp--dg~~-Lasgs~Dg  650 (711)
                                    +.+..+..-   ...+-.|+|.|  +|.. |+..+.|+
T Consensus       259 ~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnN  310 (326)
T PF13449_consen  259 IESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNN  310 (326)
T ss_pred             ccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCC

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.74  E-value=46  Score=37.36  Aligned_cols=151  Identities=19%  Similarity=0.236  Sum_probs=0.0

Q ss_pred             EEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEe-------ecCCCCeeEEEEcCCC------CEEE
Q psy14440        494 CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF-------VGHYSDVDCVQFHPNS------NYVA  560 (711)
Q Consensus       494 ~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~-------~~h~~~V~~v~~sp~~------~~la  560 (711)
                      .+..+...-..-|.|+|.|+|++|++--..|.|++++..++......       .........|++||+-      .+|.
T Consensus        21 ~~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY  100 (454)
T TIGR03606        21 DKKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY  100 (454)
T ss_pred             EEEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE


Q ss_pred             EEE----------cCCcEEEEECC-----CCcEEEEeeCCCCC----eEEEEEecCCCEEEEEeCCC-------------
Q psy14440        561 TGS----------SDRTIRLWDCV-----TGSHVRLLTGHKAP----VYALSFSVCGRFLASAGGDG-------------  608 (711)
Q Consensus       561 tgs----------~Dg~I~iwD~~-----~~~~v~~~~~h~~~----I~~la~spdg~~Lasgs~Dg-------------  608 (711)
                      +..          ....|.-|.+.     -......+.+....    -..|+|.|||.+.++.++.+             
T Consensus       101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~a  180 (454)
T TIGR03606       101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQA  180 (454)
T ss_pred             EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcchh


Q ss_pred             -------------------cEEEEECCCC-----------eEEEEeeCCCCCEEEEEEeCCCCEEEE
Q psy14440        609 -------------------NVHMWDLSNG-----------HLLTLLTGHTDVVRALCFSRDGNILAS  645 (711)
Q Consensus       609 -------------------~I~iwDl~sg-----------~~i~~l~~h~~~V~sl~fspdg~~Las  645 (711)
                                         +|.=.|....           +...--.||++. ..++|.++|.+.++
T Consensus       181 Q~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp-~Gla~dp~G~Lw~~  246 (454)
T TIGR03606       181 QHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNP-QGLAFTPDGTLYAS  246 (454)
T ss_pred             ccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEecccc-ceeEECCCCCEEEE

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.70  E-value=2.7  Score=42.33  Aligned_cols=67  Identities=10%  Similarity=0.221  Sum_probs=0.0

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEe------e--------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        591 ALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLL------T--------GHTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       591 ~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l------~--------~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      .+.+..++++|++-+.+|.+++||+.+++.+..-      -        .....|.++.++.+|.-|++-+ +|..+.||
T Consensus        15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec


Q ss_pred             CC
Q psy14440        657 FA  658 (711)
Q Consensus       657 l~  658 (711)
                      ..
T Consensus        94 ~~   95 (219)
T PF07569_consen   94 PD   95 (219)
T ss_pred             cc

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1900|consensus

Probab=88.70  E-value=3  Score=50.97  Aligned_cols=136  Identities=18%  Similarity=0.312  Sum_probs=0.0

Q ss_pred             eCCCeEEEEECCCCeEEEEEecCCCCEEEEE--------EcCCCCEEEEEECCCeEEEEEC---CCCceeEEeecC----
Q psy14440        479 SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIK--------FSPHGYYFASAGHDRMARLWAT---DSYHPLRLFVGH----  543 (711)
Q Consensus       479 s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~--------~sp~g~~l~sgs~Dg~i~lwd~---~~~~~~~~~~~h----  543 (711)
                      +.|+.+.+|+.+++.....+.+-...|..|.        |.+.=+++++.+.--.|.++-+   +.......+..+    
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee


Q ss_pred             --CCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-------------------------CCcEEEEeeCCCCCeEEEEEec
Q psy14440        544 --YSDVDCVQFHPNSNYVATGSSDRTIRLWDCV-------------------------TGSHVRLLTGHKAPVYALSFSV  596 (711)
Q Consensus       544 --~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~-------------------------~~~~v~~~~~h~~~I~~la~sp  596 (711)
                        ...|.|+....+|+.+++|-.|   .+|.+.                         -.........+..+|..+++..
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc


Q ss_pred             CCCEEEEEeCCCcEEEEECCC
Q psy14440        597 CGRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       597 dg~~Lasgs~Dg~I~iwDl~s  617 (711)
                      ....+.+-+..|+|.+||+..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=88.55  E-value=39  Score=36.31  Aligned_cols=231  Identities=10%  Similarity=0.042  Sum_probs=0.0

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc-cCCEEEEEEcC
Q psy14440        392 CAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH-EGPVRKLSFSP  470 (711)
Q Consensus       392 ~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h-~~~V~~l~fsp  470 (711)
                      +++...+.-+++.|.....+.++|+                             +....+-...-.-. ..........-
T Consensus        12 ~~~~~~~~vyv~GG~~~~~~~~~d~-----------------------------~~~~~~W~~l~~~p~~~R~~~~~~~~   62 (346)
T TIGR03547        12 TGAIIGDKVYVGLGSAGTSWYKLDL-----------------------------KKPSKGWQKIADFPGGPRNQAVAAAI   62 (346)
T ss_pred             eEEEECCEEEEEccccCCeeEEEEC-----------------------------CCCCCCceECCCCCCCCcccceEEEE


Q ss_pred             CCCEEEEEeCC-----------CeEEEEECCCCeEEEEEecCCCCEEEEEEc--CCCCEEEEEECC--------------
Q psy14440        471 DRSLLLSCSQD-----------NTIRLWSLLLWRCLVVYKGHGHPVWDIKFS--PHGYYFASAGHD--------------  523 (711)
Q Consensus       471 dg~~L~s~s~D-----------g~V~iwdl~t~~~~~~~~~h~~~V~~v~~s--p~g~~l~sgs~D--------------  523 (711)
                      +++..+.|+.+           ..+..||..+.+=...-..........+..  -+++..+.|+.+              
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~  142 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAA  142 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhc


Q ss_pred             -------------------------CeEEEEECCCCceeEEeecCC-CCeeEEEEcCCCCEEEEEEcC------CcEEEE
Q psy14440        524 -------------------------RMARLWATDSYHPLRLFVGHY-SDVDCVQFHPNSNYVATGSSD------RTIRLW  571 (711)
Q Consensus       524 -------------------------g~i~lwd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~latgs~D------g~I~iw  571 (711)
                                               ..+.+||..+.+=...-.-.. .........-++++++.|+.+      ..+.+|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y  222 (346)
T TIGR03547       143 DKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQY  222 (346)
T ss_pred             CccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEE


Q ss_pred             ECCCCcEEEEeeCCCCC---------eEEEEEecCCCEEEEEeCC----------------------CcEEEEECCCCeE
Q psy14440        572 DCVTGSHVRLLTGHKAP---------VYALSFSVCGRFLASAGGD----------------------GNVHMWDLSNGHL  620 (711)
Q Consensus       572 D~~~~~~v~~~~~h~~~---------I~~la~spdg~~Lasgs~D----------------------g~I~iwDl~sg~~  620 (711)
                      |+...+..-.....-..         ....+..-+++..+.|+.+                      ..+.+||..+.+-
T Consensus       223 ~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W  302 (346)
T TIGR03547       223 LFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKW  302 (346)
T ss_pred             EecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcc


Q ss_pred             EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy14440        621 LTLLTGHTDVVRALCFSRDGNILASSGQDCS  651 (711)
Q Consensus       621 i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~  651 (711)
                      ...-.-....-...+..-++++++.||.+..
T Consensus       303 ~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~~  333 (346)
T TIGR03547       303 SKVGKLPQGLAYGVSVSWNNGVLLIGGENSG  333 (346)
T ss_pred             cccCCCCCCceeeEEEEcCCEEEEEeccCCC

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=88.54  E-value=36  Score=35.94  Aligned_cols=233  Identities=12%  Similarity=0.063  Sum_probs=0.0

Q ss_pred             EEEEC--CCCCEEEEEeC-CCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEec---CCCeeEEEeecccCCEEE
Q psy14440        392 CAEIS--EDVSILAVGFS-ESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDE---RNAETTRTLVGHEGPVRK  465 (711)
Q Consensus       392 ~l~fs--~dg~~LatG~~-dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~---~~~~~~~~l~~h~~~V~~  465 (711)
                      +++|+  .-|++++.|.. +|.+.+....-.+.-.+....+.-.+     ...-++|..   .+.-......++-...+-
T Consensus        19 Sla~sTYQagkL~~ig~~~~g~l~~~~r~F~r~MGl~~~~~~l~~-----~t~~qiw~f~~~~n~l~~~~~~~~~D~~yv   93 (335)
T TIGR03032        19 SLAVTTYQAGKLFFIGLQPNGELDVFERTFPRPMGLAVSPQSLTL-----GTRYQLWRFANVDNLLPAGQTHPGYDRLYV   93 (335)
T ss_pred             EEEEEeeecceEEEEEeCCCCcEEEEeeccCccceeeeeCCeEEE-----EEcceeEEcccccccccccccCCCCCeEEe


Q ss_pred             EEEcC-----CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCE-------------------EEEEEcCCCCEEEEE-
Q psy14440        466 LSFSP-----DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV-------------------WDIKFSPHGYYFASA-  520 (711)
Q Consensus       466 l~fsp-----dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V-------------------~~v~~sp~g~~l~sg-  520 (711)
                      -.-+.     |-.-++.  .++.+.+-+.. ..|+.++....+.+                   +.+++....-..+|+ 
T Consensus        94 Pr~~~~TGdidiHdia~--~~~~l~fVNT~-fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~  170 (335)
T TIGR03032        94 PRASYVTGDIDAHDLAL--GAGRLLFVNTL-FSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTAL  170 (335)
T ss_pred             eeeeeeccCcchhheee--cCCcEEEEECc-ceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEe


Q ss_pred             -----------ECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCe
Q psy14440        521 -----------GHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPV  589 (711)
Q Consensus       521 -----------s~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I  589 (711)
                                 ....--.++|+.+++.+..   ...-..+-.|+ +|+..++-+..|.|.-+|..+|+...... -.+..
T Consensus       171 ~~sD~~~gWR~~~~~gG~vidv~s~evl~~---GLsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~-vpG~~  245 (335)
T TIGR03032       171 SQSDVADGWREGRRDGGCVIDIPSGEVVAS---GLSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAF-LPGFT  245 (335)
T ss_pred             eccCCcccccccccCCeEEEEeCCCCEEEc---CccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEE-CCCCC


Q ss_pred             EEEEEecCCCEEEEEeC--------------------CCcEEEEECCCCeEEEEeeCCC--CCEEEEEEeCC
Q psy14440        590 YALSFSVCGRFLASAGG--------------------DGNVHMWDLSNGHLLTLLTGHT--DVVRALCFSRD  639 (711)
Q Consensus       590 ~~la~spdg~~Lasgs~--------------------Dg~I~iwDl~sg~~i~~l~~h~--~~V~sl~fspd  639 (711)
                      ..++|.  |+++++|-+                    .+-|.|.|+++|..+..++-..  ..+.+++.-|.
T Consensus       246 rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg  315 (335)
T TIGR03032       246 RGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG  315 (335)
T ss_pred             ccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecC

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=88.46  E-value=31  Score=36.26  Aligned_cols=155  Identities=13%  Similarity=0.188  Sum_probs=0.0

Q ss_pred             CEEEEEEcCCCCEEEEEECC------------CeEEEEECCCCceeEEee------cCCCCeeEEEEcCCCC------EE
Q psy14440        504 PVWDIKFSPHGYYFASAGHD------------RMARLWATDSYHPLRLFV------GHYSDVDCVQFHPNSN------YV  559 (711)
Q Consensus       504 ~V~~v~~sp~g~~l~sgs~D------------g~i~lwd~~~~~~~~~~~------~h~~~V~~v~~sp~~~------~l  559 (711)
                      .|..+.....++.-+.-+.-            -.+.+||+.+.+.++.+.      ...+.+..+.+.....      ..
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE


Q ss_pred             EEEEcCCcEEEEECCCCcEEEEeeCC-------------------CCCeEEEEEec---CCCEEEEEeCCCcEEEEECCC
Q psy14440        560 ATGSSDRTIRLWDCVTGSHVRLLTGH-------------------KAPVYALSFSV---CGRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       560 atgs~Dg~I~iwD~~~~~~v~~~~~h-------------------~~~I~~la~sp---dg~~Lasgs~Dg~I~iwDl~s  617 (711)
                      ++-+..+-|.|+|+.+++..|....+                   ...+..++.++   +|++|.-+...+ -++|-+.+
T Consensus        82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T  160 (287)
T PF03022_consen   82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPT  160 (287)
T ss_dssp             EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEH
T ss_pred             EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEH


Q ss_pred             --------------CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        618 --------------GHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       618 --------------g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                                    .+.+..+-...+....++++++|.++++--..+.|..|+..+
T Consensus       161 ~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  161 SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred             HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCC

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=87.89  E-value=1.2  Score=43.30  Aligned_cols=56  Identities=25%  Similarity=0.397  Sum_probs=0.0

Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy14440         21 IIQQTLSPQQPPVSPQHQNMMSPIQQHSLSPHTQAPSPQPPAQPQQVPSPYHTPPP   76 (711)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (711)
                      ++.+.++++++..++..+.++.+..++++|.+.++.+|-++..|||.+..+..|||
T Consensus       123 ~~~~~~~~~~~~~~~~yp~~~~~~y~~~pp~~~~~~~~~~~~~Ppp~~~~~~~pp~  178 (179)
T PF13908_consen  123 TVRHQPPPQPPSQPPSYPSPQYQGYQPPPPQPGQPYPPYPPQYPPPYPAQPQGPPP  178 (179)
T ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

>KOG4590|consensus

Probab=87.85  E-value=0.57  Score=50.90  Aligned_cols=72  Identities=15%  Similarity=0.213  Sum_probs=0.0

Q ss_pred             CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHh
Q psy14440         29 QQPP--VSPQHQNMMSPIQQHSLSPHTQAPSPQPPAQPQQVPSPYHTPPPSQTSKQSGKAPDKNTLITMLKLLR  100 (711)
Q Consensus        29 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yl~  100 (711)
                      +.|.  .+|+.+|...+..++++...+.+||.++-+++|+++...--+|++|++++.+-++.+..+++=..|+.
T Consensus       146 ~~~~~~~~p~~pp~~~~~a~~~~~~~~~ppp~p~~~~~p~~p~~~~a~~~~p~~~~~~~~~~~~~~~a~~~g~~  219 (409)
T KOG4590|consen  146 PSPSSGSPPPSPPSANGVAPPGPHYDPGPPPIPPAGPPPPPPGEHGAPPDPPPPPPLGGARQKQSKQATANGSH  219 (409)
T ss_pred             cCCCCCCCCCCCcccCCCCCCCcccCCCCCCccccCCCCCCcccccCCCCCCcccccccccccccccccCCccc

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.71  E-value=1.8  Score=47.02  Aligned_cols=172  Identities=13%  Similarity=0.059  Sum_probs=0.0

Q ss_pred             CCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCC------CCee-EEEEcCCCCEEEEEE
Q psy14440        491 LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHY------SDVD-CVQFHPNSNYVATGS  563 (711)
Q Consensus       491 t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~------~~V~-~v~~sp~~~~latgs  563 (711)
                      .++.+..+..-...|..+-..|+|+.+..-+. .++.++++++......-....      ..|+ .+..-..|..+.+++
T Consensus       209 q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~  287 (733)
T COG4590         209 QQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVH  287 (733)
T ss_pred             hhhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEc


Q ss_pred             cCCcEEEE-ECCCC-----cEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEe
Q psy14440        564 SDRTIRLW-DCVTG-----SHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFS  637 (711)
Q Consensus       564 ~Dg~I~iw-D~~~~-----~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fs  637 (711)
                      .||-|.-| |++.+     ..++.++-....+..+.-..+.+-+++-+..|++.++.....+.+-.-.... .+.-+++|
T Consensus       288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~-~~~~~~~S  366 (733)
T COG4590         288 EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ-APQLVAMS  366 (733)
T ss_pred             CCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc-CcceeeeC


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCccC
Q psy14440        638 RDGNILASSGQDCSVKLWDFAKLSDEVG  665 (711)
Q Consensus       638 pdg~~Lasgs~Dg~V~iWdl~~~~~~~~  665 (711)
                      |.+.+|++-. .|.++++.+++...+..
T Consensus       367 p~~~~Ll~e~-~gki~~~~l~Nr~Peis  393 (733)
T COG4590         367 PNQAYLLSED-QGKIRLAQLENRNPEIS  393 (733)
T ss_pred             cccchheeec-CCceEEEEecCCCCCcc

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=87.57  E-value=26  Score=37.31  Aligned_cols=180  Identities=9%  Similarity=-0.010  Sum_probs=0.0

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCeE----EEEEecCCCCEEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCce
Q psy14440        471 DRSLLLSCSQD-----NTIRLWSLLLWRC----LVVYKGHGHPVWDIKFSPHGYYFASAGH-----DRMARLWATDSYHP  536 (711)
Q Consensus       471 dg~~L~s~s~D-----g~V~iwdl~t~~~----~~~~~~h~~~V~~v~~sp~g~~l~sgs~-----Dg~i~lwd~~~~~~  536 (711)
                      ++..++.|+.+     ..+..||+.+.+-    ...-......-...+..-+++.++.|+.     ...+..||+.+.+=
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W  151 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW  151 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe


Q ss_pred             eEEeecCC-CCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCCcEEEEeeCCCCC------eEEEEEecCCCEEEEEe
Q psy14440        537 LRLFVGHY-SDVDCVQFHPNSNYVATGSSD----RTIRLWDCVTGSHVRLLTGHKAP------VYALSFSVCGRFLASAG  605 (711)
Q Consensus       537 ~~~~~~h~-~~V~~v~~sp~~~~latgs~D----g~I~iwD~~~~~~v~~~~~h~~~------I~~la~spdg~~Lasgs  605 (711)
                      ...-.-.. ......+..-+++..+.|+.+    ..+.+||..+.+-...-......      ..+.+...++++++.|+
T Consensus       152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG  231 (323)
T TIGR03548       152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGG  231 (323)
T ss_pred             eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECC


Q ss_pred             CC-------------------------------------CcEEEEECCCCeEEEEeeCC-CCCEEEEEEeCCCCEEEEEe
Q psy14440        606 GD-------------------------------------GNVHMWDLSNGHLLTLLTGH-TDVVRALCFSRDGNILASSG  647 (711)
Q Consensus       606 ~D-------------------------------------g~I~iwDl~sg~~i~~l~~h-~~~V~sl~fspdg~~Lasgs  647 (711)
                      .+                                     ..|.+||+.+.+-...-... ......-...-++++.+.||
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG  311 (323)
T TIGR03548       232 FNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSING  311 (323)
T ss_pred             cCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEec


Q ss_pred             CCC
Q psy14440        648 QDC  650 (711)
Q Consensus       648 ~Dg  650 (711)
                      ...
T Consensus       312 ~~~  314 (323)
T TIGR03548       312 ELK  314 (323)
T ss_pred             ccc

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	711
2nxp_A	156	Structure Of Ntd2 Domain Of The Human Taf5 Subunit		3e-37
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-33
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		9e-29
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-26
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-23
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-26
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-23
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-26
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-23
2h9l_A	329	Wdr5delta23 Length = 329		6e-26
2h9l_A	329	Wdr5delta23 Length = 329		3e-23
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-26
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-23
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		7e-26
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-23
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-26
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-23
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-26
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-22
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		8e-26
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-23
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		8e-26
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-23
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		9e-26
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-23
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		9e-26
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-23
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		9e-26
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-23
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-25
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-23
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-11
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		8e-25
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		9e-23
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-11
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-24
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-23
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-24
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-23
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-24
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-06
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-19
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-19
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-17
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-19
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-19
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-19
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		3e-19
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-19
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-19
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-10
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		5e-18
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		5e-18
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-18
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		5e-18
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		5e-18
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-18
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-17
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		9e-15
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-17
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-17
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-16
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-12
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		9e-16
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		6e-15
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		7e-15
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		7e-15
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		9e-15
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-14
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-14
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-14
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-14
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-11
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		6e-14
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-07
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		9e-14
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		6e-07
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-13
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-13
2j4b_A	138	Crystal Structure Of Encephalitozoon Cuniculi Taf5		2e-13
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		3e-13
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-13
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-13
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		6e-13
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		7e-13
2j49_A	148	Crystal Structure Of Yeast Taf5 N-Terminal Domain L		9e-13
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-12
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-12
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-11
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-10
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		4e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-10
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-10
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		7e-09
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		1e-08
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-05
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		2e-08
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		2e-08
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		1e-07
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-07
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-07
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		5e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		3e-07
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		3e-07
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		3e-07
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-06
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-06
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		1e-06
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		2e-06
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		2e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-06
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		2e-06
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		2e-06
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		3e-06
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		8e-06
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		1e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		2e-05
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		2e-05
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		2e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-05
3mmy_A	368	Structural And Functional Analysis Of The Interacti		2e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		2e-04

>pdb|2NXP|A Chain A, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of Tfiid Length = 156

Iteration: 1
 Score =  153 bits (387), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/147 (49%), Positives = 104/147 (70%)
Query: 128 EIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGH 187
           ++  +LSAY  +GDP  YE+ Y  LK FIE SLD ++ EL  + YP+ VH Y+ELVYN H
Sbjct: 10  DVSAVLSAYNQQGDPTXYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHXYLELVYNQH 69
Query: 188 EHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSL 247
           E++A     K   D E +YQ+DLR LSS+TK++  + NE    FR+++F++R+SRD+  L
Sbjct: 70  ENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHXKGNETXLDFRTSKFVLRISRDSYQL 129
Query: 248 LKRHLQEKKHTVLLNIVQEHLYFDMYE 274
           LKRHLQEK++  + NIVQEHLY D+++
Sbjct: 130 LKRHLQEKQNNQIWNIVQEHLYIDIFD 156

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 135/285 (47%), Gaps = 15/285 (5%)
Query: 382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKS----------SDQLQ 431
           TL      V     S D   +A    +  +KLW+   Q L+ +            S   Q
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQ 357
Query: 432 DIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL 491
            I    DD  V++ + RN +  +TL GH   VR ++FSPD   + S S D T++LW+   
Sbjct: 358 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 416
Query: 492 WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQ 551
            + L    GH   VW + FSP     ASA  D+  +LW  +    L+   GH S V  V 
Sbjct: 417 -QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVA 474
Query: 552 FHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVH 611
           F P+   +A+ S D+T++LW+   G  ++ LTGH + V  ++FS  G+ +ASA  D  V 
Sbjct: 475 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 533
Query: 612 MWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
           +W+  N             V  + FS DG  +AS+  D +VKLW+
Sbjct: 534 LWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  125 bits (314), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 105/201 (52%), Gaps = 4/201 (1%)
Query: 456 LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGY 515
           L  H   VR ++FSPD   + S S D T++LW+    + L    GH   VW + FSP G 
Sbjct: 12  LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 516 YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT 575
             ASA  D+  +LW  +    L+   GH S V  V F P+   +A+ S D+T++LW+   
Sbjct: 71  TIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N 128
Query: 576 GSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALC 635
           G  ++ LTGH + V+ ++FS  G+ +ASA  D  V +W+  N             V  + 
Sbjct: 129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA 187
Query: 636 FSRDGNILASSGQDCSVKLWD 656
           FS DG  +AS+  D +VKLW+
Sbjct: 188 FSPDGQTIASASDDKTVKLWN 208

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 39  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 98
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 99  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
              +CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 218
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D T++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 219 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 278
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
            D  V++W+L             DVV +       NI+AS+    D ++KLW
Sbjct: 279 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L S S D  I++W     +      GH   + D+ +S   
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 219
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D ++KLWD++K
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSK 245

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 41  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 100
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
              +CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 220
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D T++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 221 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 280
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
            D  V++W+L             DVV +       NI+AS+    D ++KLW
Sbjct: 281 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L S S D  I++W     +      GH   + D+ +S   
Sbjct: 42  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 221
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D ++KLWD++K
Sbjct: 222 VKFSPNGKYILAATLDNTLKLWDYSK 247

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  116 bits (290), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
              +CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D T++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
            D  V++W+L             DVV +       NI+AS+    D ++KLW
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L S S D  I++W     +      GH   + D+ +S   
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D ++KLWD++K
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSK 229

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 34  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 93
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 94  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
              +CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 154 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 213
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D T++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 214 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 273
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
            D  V++W+L             DVV +       NI+AS+    D ++KLW
Sbjct: 274 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L S S D  I++W     +      GH   + D+ +S   
Sbjct: 35  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 95  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 155 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 214
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D ++KLWD++K
Sbjct: 215 VKFSPNGKYILAATLDNTLKLWDYSK 240

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
              +CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D T++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
            D  V++W+L             DVV +       NI+AS+    D ++KLW
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L S S D  I++W     +      GH   + D+ +S   
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D ++KLWD++K
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSK 229

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  115 bits (288), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
              +CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D T++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
            D  V++W+L             DVV +       NI+AS+    D ++KLW
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L S S D  I++W     +      GH   + D+ +S   
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D ++KLWD++K
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSK 223

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  115 bits (288), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 13  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 72
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 73  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
              +CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 133 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 192
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D T++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 193 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 252
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
            D  V++W+L             DVV +       NI+AS+    D ++KLW
Sbjct: 253 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L S S D  I++W     +      GH   + D+ +S   
Sbjct: 14  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 74  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 193
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D ++KLWD++K
Sbjct: 194 VKFSPNGKYILAATLDNTLKLWDYSK 219

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
              +CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D T++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
            D  V++W+L             DVV +       NI+AS+    D ++KLW
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L + S D  I++W     +      GH   + D+ +S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D ++KLWD++K
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSK 226

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
              +CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D T++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
            D  V++W+L             DVV +       NI+AS+    D ++KLW
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L S S D  I++W     +      GH   + D+ +S   
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D ++KLWD++K
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSK 223

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 22  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 81
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 82  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
              +CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 142 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 201
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D T++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 202 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 261
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
            D  V++W+L             DVV +       NI+AS+    D ++KLW
Sbjct: 262 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L S S D  I++W     +      GH   + D+ +S   
Sbjct: 23  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 83  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 143 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 202
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D ++KLWD++K
Sbjct: 203 VKFSPNGKYILAATLDNTLKLWDYSK 228

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
              +CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D T++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
            D  V++W+L             DVV +       NI+AS+    D ++KLW
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L S S D  I++W     +      GH   + D+ +S   
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D ++KLWD++K
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSK 229

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 18  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 77
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 78  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
              +CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 138 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 197
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D T++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 198 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 257
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
            D  V++W+L             DVV +       NI+AS+    D ++KLW
Sbjct: 258 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L S S D  I++W     +      GH   + D+ +S   
Sbjct: 19  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 79  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 139 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 198
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D ++KLWD++K
Sbjct: 199 VKFSPNGKYILAATLDNTLKLWDYSK 224

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 16  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 75
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 76  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
              +CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 136 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 195
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D T++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 196 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 255
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
            D  V++W+L             DVV +       NI+AS+    D ++KLW
Sbjct: 256 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L S S D  I++W     +      GH   + D+ +S   
Sbjct: 17  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 77  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 137 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 196
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D ++KLWD++K
Sbjct: 197 VKFSPNGKYILAATLDNTLKLWDYSK 222

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 135/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
               CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D T++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
            D  V++W+L             DVV +       NI+AS+    D ++KLW
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L S S D  I++W     +      GH   + D+ +S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D ++KLWD++K
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSK 226

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%)
Query: 533 SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL 592
           +Y  +    GH   V  V+F PN  ++A+ S+D+ I++W    G   + ++GHK  +  +
Sbjct: 15  NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 593 SFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSV 652
           ++S     L SA  D  + +WD+S+           + V    F+   N++ S   D SV
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 653 KLWD 656
           ++WD
Sbjct: 135 RIWD 138

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  112 bits (280), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 134/292 (45%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
               CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D  ++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 200 FVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
            D  V++W+L             DVV +       NI+AS+    D ++KLW
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  105 bits (262), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L S S D  I++W     +      GH   + D+ +S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D  +KLWD++K
Sbjct: 201 VKFSPNGKYILAATLDNDLKLWDYSK 226

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%)
Query: 533 SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL 592
           +Y  +    GH   V  V+F PN  ++A+ S+D+ I++W    G   + ++GHK  +  +
Sbjct: 15  NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 593 SFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSV 652
           ++S     L SA  D  + +WD+S+           + V    F+   N++ S   D SV
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 653 KLWD 656
           ++WD
Sbjct: 135 RIWD 138

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
              +CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D T++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
            D  V++W+L             DVV +       NI+AS+    D ++KL+
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L S S D  I++W     +      GH   + D+ +S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D ++KLWD++K
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSK 226

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 135/291 (46%), Gaps = 17/291 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
           +TL    + V+  + S +   LA   ++  IK+W     K +   S  +L   D+    D
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
                    D  ++I D  + +  +TL GH   V   +F+P  +L++S S D ++R+W +
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
              +CL     H  PV  + F+  G    S+ +D + R+W T S   L+  +   +  V 
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
            V+F PN  Y+   + D T++LWD   G  ++  TGHK   Y +  +FSV  G+++ S  
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKL 654
            D  V++W+L             DVV +       NI+AS+    D ++KL
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 310

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V  + FSP+   L S S D  I++W     +      GH   + D+ +S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
               SA  D+  ++W   S   L+   GH + V C  F+P SN + +GS D ++R+WD  
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
           TG  ++ L  H  PV A+ F+  G  + S+  DG   +WD ++           +  V  
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
           + FS +G  + ++  D ++KLWD++K
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSK 226

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 20/240 (8%)
Query: 438 DDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV 497
           +D  +++ D    +  RTL GH   V+ +SF     LL SCS D TI+LW    + C+  
Sbjct: 128 EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT 187
Query: 498 YKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSN 557
             GH H V  +   P+G +  SA  D+  ++W   + + ++ F GH   V  V+ + +  
Sbjct: 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247
Query: 558 YVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFS--------------------VC 597
            +A+ S+D+T+R+W   T      L  H+  V  +S++                      
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307
Query: 598 GRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
           G FL S   D  + MWD+S            + VR + F   G  + S   D ++++WD+
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 582 LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGN 641
           L+GH++PV  + F      + SA  D  + +WD              D V+ + F   G 
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 642 ILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYL 685
           +LAS   D ++KLWDF       G E +   H  D   SS++ +
Sbjct: 164 LLASCSADMTIKLWDFQ------GFECIRTMHGHDHNVSSVSIM 201

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 19/219 (8%)
Query: 455 TLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLL-----LWRCLVVYKGHGHPVWDI 508
           TL GH G V  L+ S  + +LLLS S+D T+  W L          +  +KGH H V D 
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 509 KFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTI 568
             +  G Y  SA  D+  RLW   +    + FVGH SDV  V     ++ + +GS D+TI
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 569 RLWDCVTGSHVRLLTGHKAPVYALSF---------SVCGRFLASAGGDGNVHMWDLSNXX 619
           ++W  + G  +  L GH   V  +           SV    + SAG D  V  W+L+   
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKXVKAWNLNQFQ 187
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
                      +  L  S DG ++AS+G+D  + LW+ A
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLA 226

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 126/278 (45%), Gaps = 20/278 (7%)
Query: 390 VTCAEISEDVSILAVGFSESYIKLWSLVPQK-LKAMKS------SDQLQD--IEMECDDI 440
           +TC +   +   +  G  ++ +K+WS V  K L+ +        S Q++D  I     D 
Sbjct: 122 ITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDR 179
Query: 441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG 500
            +++ +    E   TL GH   VR +     R  ++S S+D T+R+W +   +CL V  G
Sbjct: 180 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMG 237
Query: 501 HGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVA 560
           H   V  +++   G    S  +D M ++W  ++   L    GH + V  +QF  +  +V 
Sbjct: 238 HVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVV 293
Query: 561 TGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXX 620
           +GS D +IR+WD  TG+ +  LTGH++    +        L S   D  V +WD+     
Sbjct: 294 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQC 351
Query: 621 XXXXXXXXDVVRAL-CFSRDGNILASSGQDCSVKLWDF 657
                       A+ C   + N + +S  D +VKLWD 
Sbjct: 352 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 454 RTLVGHEGPV-RKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP 512
           + L GH+  V   L F  +R  ++S S DNT+++WS +  +CL    GH   VW  +   
Sbjct: 112 KVLKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 169
Query: 513 HGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWD 572
           +     S   DR  ++W  ++   +    GH S V C+  H     V +GS D T+R+WD
Sbjct: 170 N--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWD 225
Query: 573 CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVR 632
             TG  + +L GH A V  + +   GR + S   D  V +WD              + V 
Sbjct: 226 IETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 283
Query: 633 ALCFSRDGNILASSGQDCSVKLWD 656
           +L F  DG  + S   D S+++WD
Sbjct: 284 SLQF--DGIHVVSGSLDTSIRVWD 305

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 19/219 (8%)
Query: 455 TLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLL-----LWRCLVVYKGHGHPVWDI 508
           TL GH G V  L+ S  + +LLLS S+D T+  W L          +  +KGH H V D 
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 509 KFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTI 568
             +  G Y  SA  D+  RLW   +    + FVGH SDV  V     ++ + +GS D+TI
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 569 RLWDCVTGSHVRLLTGHKAPVYALSF---------SVCGRFLASAGGDGNVHMWDLSNXX 619
           ++W  + G  +  L GH   V  +           SV    + SAG D  V  W+L+   
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKAWNLNQFQ 187
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
                      +  L  S DG ++AS+G+D  + LW+ A
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 19/219 (8%)
Query: 455 TLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLL-----LWRCLVVYKGHGHPVWDI 508
           TL GH G V  L+ S  + +LLLS S+D T+  W L          +  +KGH H V D 
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 509 KFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTI 568
             +  G Y  SA  D+  RLW   +    + FVGH SDV  V     ++ + +GS D+TI
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 569 RLWDCVTGSHVRLLTGHKAPVYALSF---------SVCGRFLASAGGDGNVHMWDLSNXX 619
           ++W  + G  +  L GH   V  +           SV    + SAG D  V  W+L+   
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKAWNLNQFQ 187
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
                      +  L  S DG ++AS+G+D  + LW+ A
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 19/219 (8%)
Query: 455 TLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLL-----LWRCLVVYKGHGHPVWDI 508
           TL GH G V  L+ S  + +LLLS S+D T+  W L          +  +KGH H V D 
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 509 KFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTI 568
             +  G Y  SA  D+  RLW   +    + FVGH SDV  V     ++ + +GS D+TI
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 569 RLWDCVTGSHVRLLTGHKAPVYALSF---------SVCGRFLASAGGDGNVHMWDLSNXX 619
           ++W  + G  +  L GH   V  +           SV    + SAG D  V  W+L+   
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKAWNLNQFQ 187
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
                      +  L  S DG ++AS+G+D  + LW+ A
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 19/219 (8%)
Query: 455 TLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLL-----LWRCLVVYKGHGHPVWDI 508
           TL GH G V  L+ S  + +LLLS S+D T+  W L          +  +KGH H V D 
Sbjct: 6   TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 509 KFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTI 568
             +  G Y  SA  D+  RLW   +    + FVGH SDV  V     ++ + +GS D+TI
Sbjct: 66  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 569 RLWDCVTGSHVRLLTGHKAPVYALSF---------SVCGRFLASAGGDGNVHMWDLSNXX 619
           ++W  + G  +  L GH   V  +           SV    + SAG D  V  W+L+   
Sbjct: 126 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKAWNLNQFQ 181
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
                      +  L  S DG ++AS+G+D  + LW+ A
Sbjct: 182 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 220

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 19/219 (8%)
Query: 455 TLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLL-----LWRCLVVYKGHGHPVWDI 508
           TL GH G V  L+ S  + +LLLS S+D T+  W L          +  +KGH H V D 
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 509 KFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTI 568
             +  G Y  SA  D+  RLW   +    + FVGH SDV  V     ++ + +GS D+TI
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 569 RLWDCVTGSHVRLLTGHKAPVYALSF---------SVCGRFLASAGGDGNVHMWDLSNXX 619
           ++W  + G  +  L GH   V  +           SV    + SAG D  V  W+L+   
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKAWNLNQFQ 187
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
                      +  L  S DG ++AS+G+D  + LW+ A
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 131/305 (42%), Gaps = 44/305 (14%)
Query: 330 KKTKSDPNAPPVD--RIPLPPL-KDSEKID-KLKALREATKRVTLGPESLPSIACYTLLN 385
           K    D NAPP    R   P + +D E I+   +  R + +R+    E+   + C     
Sbjct: 84  KNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYC----- 138
Query: 386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECD------- 438
                    +  D   +  G  ++ IK+W     + K + +      + ++ D       
Sbjct: 139 ---------LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG 189
Query: 439 --DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL------L 490
             D  VR+ D    E   TL+ H   V  L F  +  ++++CS+D +I +W +       
Sbjct: 190 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDIT 247
Query: 491 LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCV 550
           L R LV   GH   V  + F     Y  SA  DR  ++W T +   +R   GH   + C+
Sbjct: 248 LRRVLV---GHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 302
Query: 551 QFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNV 610
           Q+      V +GSSD TIRLWD   G+ +R+L GH+  V  + F    + + S   DG +
Sbjct: 303 QYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKI 358
Query: 611 HMWDL 615
            +WDL
Sbjct: 359 KVWDL 363

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 27/198 (13%)
Query: 471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA 530
           D   ++S  +DNTI++W      C  +  GH   V  +++        +   D   R+W 
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWD 199
Query: 531 TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV---RLLTGHKA 587
            ++   L   + H   V  ++F  N+  + T S DR+I +WD  + + +   R+L GH+A
Sbjct: 200 VNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257
Query: 588 PVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRAL--------CFSRD 639
            V  + F    +++ SA GD  + +W+ S            + VR L        C    
Sbjct: 258 AVNVVDFD--DKYIVSASGDRTIKVWNTST----------CEFVRTLNGHKRGIACLQYR 305
Query: 640 GNILASSGQDCSVKLWDF 657
             ++ S   D +++LWD 
Sbjct: 306 DRLVVSGSSDNTIRLWDI 323

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 96/216 (44%), Gaps = 11/216 (5%)
Query: 447 ERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVW 506
           E N   +R L GH G +    F  D  ++ S S D T  LW +   +    + GH   V 
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR 566
            +  +P    F S   D  A+LW        + F GH SD++ + F PN N  ATGS D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 567 TIRLWD------CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXX 620
           T RL+D       +T SH  ++ G    + ++SFS  GR L +   D N ++WD      
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 621 XXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
                   + V  L  + DG  +A+   D  +K+W+
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 96/216 (44%), Gaps = 11/216 (5%)
Query: 447 ERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVW 506
           E N   +R L GH G +    F  D  ++ S S D T  LW +   +    + GH   V 
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR 566
            +  +P    F S   D  A+LW        + F GH SD++ + F PN N  ATGS D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 567 TIRLWD------CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXX 620
           T RL+D       +T SH  ++ G    + ++SFS  GR L +   D N ++WD      
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 621 XXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
                   + V  L  + DG  +A+   D  +K+W+
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 96/216 (44%), Gaps = 11/216 (5%)
Query: 447 ERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVW 506
           E N   +R L GH G +    F  D  ++ S S D T  LW +   +    + GH   V 
Sbjct: 141 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVM 199
Query: 507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR 566
            +  +P    F S   D  A+LW        + F GH SD++ + F PN N  ATGS D 
Sbjct: 200 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 259
Query: 567 TIRLWD------CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXX 620
           T RL+D       +T SH  ++ G    + ++SFS  GR L +   D N ++WD      
Sbjct: 260 TCRLFDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 315
Query: 621 XXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
                   + V  L  + DG  +A+   D  +K+W+
Sbjct: 316 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 104/254 (40%), Gaps = 22/254 (8%)
Query: 420 KLKAMKSSDQLQDIEMECDD-ILVRIMDERN------AETTRTLVGHEGPVRKLSFSPDR 472
           + +A +  +Q++D    C D  L +I +  +        T RTL GH   +  + +  D 
Sbjct: 8   RQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDS 67
Query: 473 SLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP-----VWDIKFSPHGYYFASAGHDRMAR 527
            LL+S SQD       L++W      K H  P     V    ++P G Y A  G D +  
Sbjct: 68  RLLVSASQDG-----KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 528 LWATDSYHP----LRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT 583
           ++   +        R   GH   + C +F  + N + T S D T  LWD  TG      T
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 584 GHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNIL 643
           GH   V +LS +   R   S   D +  +WD+               + A+CF  +GN  
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 644 ASSGQDCSVKLWDF 657
           A+   D + +L+D 
Sbjct: 242 ATGSDDATCRLFDL 255

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 96/216 (44%), Gaps = 11/216 (5%)
Query: 447 ERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVW 506
           E N   +R L GH G +    F  D  ++ S S D T  LW +   +    + GH   V 
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR 566
            +  +P    F S   D  A+LW        + F GH SD++ + F PN N  ATGS D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 567 TIRLWD------CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXX 620
           T RL+D       +T SH  ++ G    + ++SFS  GR L +   D N ++WD      
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 621 XXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
                   + V  L  + DG  +A+   D  +K+W+
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 92/217 (42%), Gaps = 7/217 (3%)
Query: 446 DERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV 505
           D+      R L GH   V  +  S D    LS S D  +RLW L        + GH   V
Sbjct: 416 DKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDV 475
Query: 506 WDIKFSPHGYYFASAGHDRMARLWATDS---YHPLRLFVGHYSDVDCVQFHPNS--NYVA 560
             + FS       SA  DR  +LW T     Y       GH   V CV+F PN+    + 
Sbjct: 476 LSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535
Query: 561 TGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXX 620
           + S D+T+++W+         L GH   V  ++ S  G   AS G DG V +WDL+    
Sbjct: 536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595
Query: 621 XXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
                    V+ ALCFS +   L ++  +  +K+WD 
Sbjct: 596 LYSLEANS-VIHALCFSPNRYWLCAA-TEHGIKIWDL 630

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 128/288 (44%), Gaps = 32/288 (11%)
Query: 345 PLPPLK---DSEKI-DKLKALREATKRVTLGPESLP---SIACYTLLNARQQVTCAEISE 397
           P+PP     DS+ + D LK  ++      L   +LP    +  +  L+    V C + S 
Sbjct: 17  PIPPFLLDLDSQSVPDALK--KQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN 74
Query: 398 DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV 457
           D   LA G +++  +++ +    L A  S D   +             D  N  T+ +  
Sbjct: 75  DGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAAN------------KDPENLNTSSS-P 120
Query: 458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYF 517
             +  +R + FSPD   L + ++D  IR+W +   + +++ +GH   ++ + + P G   
Sbjct: 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 180
Query: 518 ASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTG 576
            S   DR  R+W   +     L +     V  V   P +  Y+A GS DR +R+WD  TG
Sbjct: 181 VSGSGDRTVRIWDLRTGQ-CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 577 SHVRLL-------TGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN 617
             V  L       TGHK  VY++ F+  G+ + S   D +V +W+L N
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 7/170 (4%)
Query: 508 IKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRT 567
           + FSP G + A+   DR+ R+W  ++   + +  GH  D+  + + P+ + + +GS DRT
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 568 IRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNX-------XX 620
           +R+WD  TG     L+              G+++A+   D  V +WD             
Sbjct: 189 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 248
Query: 621 XXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVN 670
                   D V ++ F+RDG  + S   D SVKLW+    +++  ++  N
Sbjct: 249 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 97/214 (45%), Gaps = 13/214 (6%)
Query: 455 TLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLLLWRCLVVY-------KGHGHPVW 506
           TL GH G V +++ +P    ++LS S+D TI +W L   R    Y       +GH H V 
Sbjct: 33  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT--RDETNYGIPQRALRGHSHFVS 90
Query: 507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR 566
           D+  S  G +  S   D   RLW   +    R FVGH  DV  V F  ++  + +GS D+
Sbjct: 91  DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 150
Query: 567 TIRLWDCVTGSHVRLL-TGHKAPVYALSFS--VCGRFLASAGGDGNVHMWDLSNXXXXXX 623
           TI+LW+ +      +    H   V  + FS       + S G D  V +W+L+N      
Sbjct: 151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 210
Query: 624 XXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
                  +  +  S DG++ AS G+D    LWD 
Sbjct: 211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 112/241 (46%), Gaps = 16/241 (6%)
Query: 454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH 513
           R L GH   V  +  S D    LS S D T+RLW L        + GH   V  + FS  
Sbjct: 57  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 514 GYYFASAGHDRMARLWATDSYHPLRLFVGHYSD-VDCVQFHPNSN--YVATGSSDRTIRL 570
                S   D+  +LW T       +    +S+ V CV+F PNS+   + +   D+ +++
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176
Query: 571 WDCVTGSHVRLLT---GHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXX 627
           W+    ++ +L T   GH   +  ++ S  G   AS G DG   +WDL N          
Sbjct: 177 WNL---ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL-NEGKHLYTLDG 232
Query: 628 XDVVRALCFSRDGNIL-ASSGQDCSVKLWDFAK--LSDEVGTEEVNLSHSAD-IKNSSLA 683
            D++ ALCFS +   L A++G   S+K+WD     + DE+  E ++ S  A+  + +SLA
Sbjct: 233 GDIINALCFSPNRYWLCAATGP--SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 290
Query: 684 Y 684
           +
Sbjct: 291 W 291

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 14/229 (6%)
Query: 442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH 501
           +R+ + +N +     +GH   V  ++FSPD   ++S  +DN +R+W++    C+      
Sbjct: 91  LRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG-ECMHTLSRG 149
Query: 502 GHPVW--DIKFSPH--GYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSN 557
            H  W   ++FSP        S G D + ++W   +   +    GH + V  V   P+ +
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS 209
Query: 558 YVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN 617
             A+   D   RLWD   G  +  +    AP+  + FS   R+   A  +  + ++DL N
Sbjct: 210 LCASSDKDGVARLWDLTKGEALSEMAA-GAPINQICFSP-NRYWMCAATEKGIRIFDLEN 267
Query: 618 XXXXXXXXXXXDVVR-------ALCFSRDGNILASSGQDCSVKLWDFAK 659
                         +       ++ +S DG+ L S   D  +++W  ++
Sbjct: 268 KDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSE 316

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 5/165 (3%)
Query: 499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNY 558
           +GH   V D+  S +G +  SA  D   RLW   +      F+GH  DV  V F P++  
Sbjct: 64  EGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQ 123
Query: 559 VATGSSDRTIRLWDCVTGSHVRLLT--GHKAPVYALSFS--VCGRFLASAGGDGNVHMWD 614
           + +G  D  +R+W+ V G  +  L+   H   V  + FS  +    + S G D  V +WD
Sbjct: 124 IVSGGRDNALRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 615 LSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAK 659
           L+            + V ++  S DG++ ASS +D   +LWD  K
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK 227

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 91/248 (36%), Gaps = 30/248 (12%)
Query: 429 QLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWS 488
           +L D+E+      V  + +   +T RTL GH   V  + +  D+  ++S SQD  +    
Sbjct: 33  KLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKV---- 88
Query: 489 LLLWRCLVVYKGHGHP-----VWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL---- 539
            ++W      K H        V    ++P G   A  G D         S +PL      
Sbjct: 89  -IVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKC------SVYPLTFDKNE 141
Query: 540 --------FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYA 591
                      H + +    F  +   + T S D T  LWD  +G  ++   GH A V  
Sbjct: 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLC 201
Query: 592 LSF--SVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQD 649
           L    S  G    S G D    +WD+ +             V ++ +   G+  AS   D
Sbjct: 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDD 261
Query: 650 CSVKLWDF 657
            + +L+D 
Sbjct: 262 ATCRLYDL 269

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 5/189 (2%)
Query: 433 IEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL- 491
           I +  DD  +R+ +    E       H   +R ++  P +  +LS S D T++LW+    
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 492 WRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSYHP-LRLFVGHYSDVDC 549
           W     ++GH H V  + F+P     FAS   DR  ++W+     P   L  G    V+ 
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 550 VQFHP--NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD 607
           V ++P  +  Y+ T S D TI++WD  T S V  L GH + V    F      + S   D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 608 GNVHMWDLS 616
           G + +W+ S
Sbjct: 250 GTLKIWNSS 258

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 5/201 (2%)
Query: 421 LKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQ 480
           ++A K   +   I +  DD  +R+ +    E       H   +R ++  P +  +LS S 
Sbjct: 58  VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 481 DNTIRLWSLLL-WRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSYHP-L 537
           D T++LW+    W     ++GH H V  + F+P     FAS   DR  ++W+     P  
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 538 RLFVGHYSDVDCVQFHP--NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFS 595
            L  G    V+ V ++P  +  Y+ T S D TI++WD  T S V  L GH + V    F 
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 596 VCGRFLASAGGDGNVHMWDLS 616
                + S   DG + +W+ S
Sbjct: 238 PTLPIIISGSEDGTLKIWNSS 258

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 5/201 (2%)
Query: 421 LKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQ 480
           ++A K   +   I +  DD  +R+ +    E       H   +R ++  P +  +LS S 
Sbjct: 58  VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 481 DNTIRLWSLLL-WRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSYHP-L 537
           D T++LW+    W     ++GH H V  + F+P     FAS   DR  ++W+     P  
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 538 RLFVGHYSDVDCVQFHP--NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFS 595
            L  G    V+ V ++P  +  Y+ T S D TI++WD  T S V  L GH + V    F 
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 596 VCGRFLASAGGDGNVHMWDLS 616
                + S   DG + +W+ S
Sbjct: 238 PTLPIIISGSEDGTLKIWNSS 258

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 37/225 (16%)
Query: 412 KLWSL-VPQKLKAMKSSD-QLQDIEMECDDI-LVRIMDERNAETTRTLVGHEGPVRKLSF 468
           K+WS    Q + A  S+D +++ + ++ DD  L+ ++DE           H+  +R +++
Sbjct: 16  KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDE---------TAHKKAIRSVAW 66
Query: 469 SPDRSLLLSCSQDNTIRLWS-------LLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG 521
            P  SLL + S D+T+ +W+             L + +GH + V  + +S  GYY A+  
Sbjct: 67  RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS 126
Query: 522 HDRMARLWATD----SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRL------- 570
            D+   +W TD     Y  + +   H  DV  V +HP+   +A+ S D T+R+       
Sbjct: 127 RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD 186
Query: 571 WDCVTGSHVRLLTGHKAPVYALSFSVC-GRF-LASAGGDGNVHMW 613
           W+CV      +L GH+  V++  F    G F L S   D  V +W
Sbjct: 187 WECVA-----VLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 5/189 (2%)
Query: 433 IEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL- 491
           I +  DD  +R+ +    E       H   +R ++  P +  +LS S D T++LW+    
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 492 WRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSYHP-LRLFVGHYSDVDC 549
           W     ++GH H V  + F+P     FAS   DR  ++W+     P   L  G    V+ 
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 550 VQFHP--NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD 607
           V ++P  +  Y+ T S D TI++WD  T S V  L GH + V    F      + S   D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 608 GNVHMWDLS 616
           G + +W+ S
Sbjct: 250 GTLKIWNSS 258

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 125/303 (41%), Gaps = 32/303 (10%)
Query: 397 EDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQD--IEMECDDILVRIMDERNAETTR 454
           E++ IL   ++  ++   + +   + ++ +  Q +D  +    DD ++R+ D  N +   
Sbjct: 97  ENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLL 156
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV--WDIKFSP 512
            L GH+G V  L ++    +L+S S D T+R+W +    C  V++GH   V   DI    
Sbjct: 157 QLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 513 HGYYFASAGHDRMARLW-----------ATDSYHPLRL--------FVG----HYSDVDC 549
           +  Y  +   D    +W             +  +PL          FVG    H + V  
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 275
Query: 550 VQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGN 609
           V  H   N V +GS D T+ +WD      + +L+GH   +Y+  +    +   SA  D  
Sbjct: 276 VSGH--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 333
Query: 610 VHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEV 669
           + +WDL N            +V  L  S     L S+  D S++ WD    S +      
Sbjct: 334 IRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT 391
Query: 670 NLS 672
           NLS
Sbjct: 392 NLS 394

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 23/233 (9%)
Query: 447 ERNAETTRTLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLLLWRCLVVY-----KG 500
           + N   +R L GH+G      + PD+ + L++ S D T  LW +   + + ++      G
Sbjct: 144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203
Query: 501 HGHPVWDIKF-SPHGYYFASAGHDRMARLWATD-SYHPLRLFVGHYSDVDCVQFHPNSNY 558
           H   V  +   S +   F S   D   RLW    +   +R + GH  D++ V+F P+   
Sbjct: 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR 263
Query: 559 VATGSSDRTIRLWDCVTGSHVRLLTGHKAP---------VYALSFSVCGRFLASAGGDGN 609
             TGS D T RL+D  TG  +++   ++ P         V +++FS+ GR L +   +G+
Sbjct: 264 FGTGSDDGTCRLFDMRTGHQLQVY--NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321
Query: 610 VHMWD--LSNXXXXXXXXXXXDVVRALC--FSRDGNILASSGQDCSVKLWDFA 658
            ++WD  L+               R  C   S DG+ L +   D ++K+W F+
Sbjct: 322 CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 13/148 (8%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
           D  +R+ D R   T +  VGH+  V  ++FSPD   +LS   +  I+LW++L        
Sbjct: 97  DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
Query: 499 KGHGHPVW------------DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSD 546
           +   H  W              K  P   YFAS G D   ++W T+ +     F  H S+
Sbjct: 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESN 215
Query: 547 VDCVQFHPNSNYVATGSSDRTIRLWDCV 574
           V+ +   PN  Y+ATG  D+ + +WD +
Sbjct: 216 VNHLSISPNGKYIATGGKDKKLLIWDIL 243

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 91/216 (42%), Gaps = 16/216 (7%)
Query: 454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH 513
           + L GH   V  L+ S +    +S S D T+RLW L        + GH   V+ + FSP 
Sbjct: 70  KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 514 GYYFASAGHDRMARLWAT--DSYHPLRLFVGHYSDVDCVQF----------HPNSNYVAT 561
                SAG +R  +LW    +          H   V CV++           P + Y A+
Sbjct: 130 NRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS 189
Query: 562 GSSDRTIRLWDCVTGSHVRL-LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXX 620
              D  +++W+  T   +R     H++ V  LS S  G+++A+ G D  + +WD+ N   
Sbjct: 190 VGWDGRLKVWN--TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY 247
Query: 621 XXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
                     +  + F+     +A  G D  VK+++
Sbjct: 248 PQREFDAGSTINQIAFNPKLQWVA-VGTDQGVKIFN 282

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 106/261 (40%), Gaps = 30/261 (11%)
Query: 437 CDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV 496
            DD  +R+ D  N +    L GH+G V  L ++    +L+S S D T+R+W +    C  
Sbjct: 139 ADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTH 197
Query: 497 VYKGHGHPV--WDIKFSPHGYYFASAGHDRMARLW-----------ATDSYHPLRL---- 539
           V++GH   V   DI    +  Y  +   D    +W             +  +PL      
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 540 ----FVG----HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYA 591
               FVG    H + V  V  H   N V +GS D T+ +WD      + +L+GH   +Y+
Sbjct: 258 ENPYFVGVLRGHXASVRTVSGH--GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYS 315
Query: 592 LSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCS 651
             +    +   SA  D  + +WDL N            +V  L  S     L S+  D S
Sbjct: 316 TIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS--DKFLVSAAADGS 373
Query: 652 VKLWDFAKLSDEVGTEEVNLS 672
           ++ WD    S +      NLS
Sbjct: 374 IRGWDANDYSRKFSYHHTNLS 394

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 7/137 (5%)
Query: 529 WATDSYHPLRLFV-GHYSDV-DCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHK 586
           W    + P R  + GH + V  C+QF    NYV TG+ D+ IR++D +    +  L+GH 
Sbjct: 105 WYNPKFVPQRTTLRGHXTSVITCLQFE--DNYVITGADDKXIRVYDSINKKFLLQLSGHD 162
Query: 587 APVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNI--LA 644
             V+AL ++  G  L S   D  V +WD+               VR L      NI  + 
Sbjct: 163 GGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 221
Query: 645 SSGQDCSVKLWDFAKLS 661
           +  +D ++ +W   K S
Sbjct: 222 TGSRDNTLHVWKLPKES 238

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL--WRCLVVYKGHGHPVWDIKFSPHGY 515
           GH+  VRK+++SP  + L S S D T  +W      + C+   +GH + V  + ++P G 
Sbjct: 59  GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 516 YFASAGHDRMARLWAT---DSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRL-- 570
             A+   D+   +W     D Y  + +   H  DV  V +HP+   +A+ S D T++L  
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178
Query: 571 -----WDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW 613
                W C        L GH++ V++L+F   G+ LAS   D  V +W
Sbjct: 179 EEEDDWVCCA-----TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 550 VQFHPNSNYVATGSSDRTIRLWDCVTGSHVR---LLTGHKAPVYALSFSVCGRFLASAGG 606
           + ++P    +A+   DR IR+W     S +    L  GH+  V  +++S CG +LASA  
Sbjct: 22  LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 607 DGNVHMW--DLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEV 664
           D    +W  +  +           + V+++ ++  GN+LA+  +D SV +W+  +  DE 
Sbjct: 82  DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE-EDEY 140
Query: 665 GTEEVNLSHSADIKN 679
               V  SH+ D+K+
Sbjct: 141 ECVSVLNSHTQDVKH 155

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 32/235 (13%)
Query: 456 LVGHEGPVRKLSFSPD-RSLLLSCSQDNTIRLWSL-------LLWRCLVVYKGHGHPVWD 507
           L GH+     LS++P+    LLS S D+TI LW +        +     ++ GH   V D
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 508 IKFS-PHGYYFASAGHDRMARLWAT---DSYHPLRLFVGHYSDVDCVQFHPNSNYV-ATG 562
           + +   H   F S   D+   +W T   ++  P      H ++V+C+ F+P S ++ ATG
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 563 SSDRTIRLWDCVTGSHVRL--LTGHKAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNXX 619
           S+D+T+ LWD +    ++L     HK  ++ + +S      LAS+G D  +H+WDLS   
Sbjct: 297 SADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355
Query: 620 XXXXXXXXXDVVRALCFSRDGN---------------ILASSGQDCSVKLWDFAK 659
                    D    L F   G+               I+ S  +D  +++W  A+
Sbjct: 356 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 32/235 (13%)
Query: 456 LVGHEGPVRKLSFSPD-RSLLLSCSQDNTIRLWSL-------LLWRCLVVYKGHGHPVWD 507
           L GH+     LS++P+    LLS S D+TI LW +        +     ++ GH   V D
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 508 IKFS-PHGYYFASAGHDRMARLWAT---DSYHPLRLFVGHYSDVDCVQFHPNSNYV-ATG 562
           + +   H   F S   D+   +W T   ++  P      H ++V+C+ F+P S ++ ATG
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 563 SSDRTIRLWDCVTGSHVRL--LTGHKAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNXX 619
           S+D+T+ LWD +    ++L     HK  ++ + +S      LAS+G D  +H+WDLS   
Sbjct: 299 SADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 357
Query: 620 XXXXXXXXXDVVRALCFSRDGN---------------ILASSGQDCSVKLWDFAK 659
                    D    L F   G+               I+ S  +D  +++W  A+
Sbjct: 358 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 412

>pdb|2J4B|A Chain A, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N- Terminal Domain Length = 138

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 146 EDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPH 205
           E +Y  LK +IE+SLD++K +L  +LYP+ +H+Y +L+      +A E   K+  DH   
Sbjct: 9   ETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK 68
Query: 206 YQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQ 265
             E++++  S+     I  N  A TF+++++ + M R    LL   L+E+  T +L I+ 
Sbjct: 69  -SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILN 127
Query: 266 EHLYFDMYEG 275
           +HL   +Y G
Sbjct: 128 QHLDIKVYVG 137

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 32/235 (13%)
Query: 456 LVGHEGPVRKLSFSPD-RSLLLSCSQDNTIRLWSL-------LLWRCLVVYKGHGHPVWD 507
           L GH+     LS++P+    LLS S D+TI LW +        +     ++ GH   V D
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 508 IKFS-PHGYYFASAGHDRMARLWAT---DSYHPLRLFVGHYSDVDCVQFHPNSNYV-ATG 562
           + +   H   F S   D+   +W T   ++  P      H ++V+C+ F+P S ++ ATG
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 563 SSDRTIRLWDCVTGSHVRL--LTGHKAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNXX 619
           S+D+T+ LWD +    ++L     HK  ++ + +S      LAS+G D  +H+WDLS   
Sbjct: 301 SADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 359
Query: 620 XXXXXXXXXDVVRALCFSRDGN---------------ILASSGQDCSVKLWDFAK 659
                    D    L F   G+               I+ S  +D  +++W  A+
Sbjct: 360 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 414

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 17/232 (7%)
Query: 438  DDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC--L 495
            +D  ++I++  N     + VGH+  VR + F+ D   L+S S+D+ I++W+   W+    
Sbjct: 988  EDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---WQTGDY 1044
Query: 496  VVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN 555
            V  + H   V D +         S   D   ++W   +    R F  H   V       +
Sbjct: 1045 VFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1103
Query: 556  SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL 615
            +   ++ S+D+T ++W     S +  L GH   V   +FS+ G  LA+   +G + +W++
Sbjct: 1104 ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1163
Query: 616  SN---------XXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
            S+                      V  +CFS D   L S+G    +K W+ A
Sbjct: 1164 SDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVA 1213

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 17/232 (7%)
Query: 438  DDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC--L 495
            +D  ++I++  N     + VGH+  VR + F+ D   L+S S+D+ I++W+   W+    
Sbjct: 981  EDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---WQTGDY 1037
Query: 496  VVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN 555
            V  + H   V D +         S   D   ++W   +    R F  H   V       +
Sbjct: 1038 VFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1096
Query: 556  SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL 615
            +   ++ S+D+T ++W     S +  L GH   V   +FS+ G  LA+   +G + +W++
Sbjct: 1097 ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
Query: 616  SN---------XXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
            S+                      V  +CFS D   L S+G    +K W+ A
Sbjct: 1157 SDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVA 1206

>pdb|2J49|A Chain A, Crystal Structure Of Yeast Taf5 N-Terminal Domain Length = 148

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 81/142 (57%), Gaps = 4/142 (2%)
Query: 142 PNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMD 201
           P  Y  AY  LK ++++SL++YK EL  ++YP+ +++++ LV     + A     +   D
Sbjct: 7   PENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVY-ARRFFDRFSPD 65
Query: 202 HEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKH---T 258
            +  +  ++ +L SV   D I+ NE+A  F+S ++ I MS+ TL+LL   L E +    +
Sbjct: 66  FKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGS 125
Query: 259 VLLNIVQEHLYFDMYEGEATRQ 280
           ++++++ +HL  ++ E    R+
Sbjct: 126 LIISVINQHLDPNIVESVTARE 147

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 32/235 (13%)
Query: 456 LVGHEGPVRKLSFSPDRSL-LLSCSQDNTIRLWSL-------LLWRCLVVYKGHGHPVWD 507
           L GH+     LS++P+ S  LLS S D+TI LW +        +     ++ GH   V D
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 508 IKFS-PHGYYFASAGHDRMARLWATDSYH---PLRLFVGHYSDVDCVQFHPNSNYV-ATG 562
           + +   H   F S   D+   +W T S +   P      H ++V+C+ F+P S ++ ATG
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 563 SSDRTIRLWDCVTGSHVRL--LTGHKAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNXX 619
           S+D+T+ LWD +    ++L     HK  ++ + +S      LAS+G D  +++WDLS   
Sbjct: 293 SADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIG 351
Query: 620 XXXXXXXXXDVVRALCFSRDGN---------------ILASSGQDCSVKLWDFAK 659
                    D    L F   G+               ++ S  +D  +++W  A+
Sbjct: 352 EEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAE 406

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 32/235 (13%)
Query: 456 LVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSL-------LLWRCLVVYKGHGHPVWD 507
           L GH+     LS++ + S  LLS S D+T+ LW +        +     ++ GH   V D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 508 IKFS-PHGYYFASAGHDRMARLWATDS---YHPLRLFVGHYSDVDCVQFHPNSNYV-ATG 562
           + +   H   F S   D+   +W T S     P  L   H ++V+C+ F+P S ++ ATG
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 563 SSDRTIRLWDCVTGSHVRLLT--GHKAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNXX 619
           S+D+T+ LWD +    ++L T   HK  ++ + +S      LAS+G D  +++WDLS   
Sbjct: 295 SADKTVALWD-LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
Query: 620 XXXXXXXXXDVVRALCFSRDGN---------------ILASSGQDCSVKLWDFAK 659
                    D    L F   G+               ++ S  +D  +++W  A+
Sbjct: 354 EEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAE 408

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 17/202 (8%)
Query: 456 LVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSL-------LLWRCLVVYKGHGHPVWD 507
           L GH+     LS++ + S  LLS S D+T+ LW +        +     ++ GH   V D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 508 IKFS-PHGYYFASAGHDRMARLWATDS---YHPLRLFVGHYSDVDCVQFHPNSNYV-ATG 562
           + +   H   F S   D+   +W T S     P  L   H ++V+C+ F+P S ++ ATG
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 563 SSDRTIRLWDCVTGSHVRLLT--GHKAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNXX 619
           S+D+T+ LWD +    ++L T   HK  ++ + +S      LAS+G D  +++WDLS   
Sbjct: 295 SADKTVALWD-LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
Query: 620 XXXXXXXXXDVVRALCFSRDGN 641
                    D    L F   G+
Sbjct: 354 EEQSAEDAEDGPPELLFIHGGH 375

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 11/223 (4%)
Query: 441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV-VYK 499
           LV I D  +    RT+ GH+  V  LS+  +R +L S S+   I    + +    +   +
Sbjct: 157 LVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ 214
Query: 500 GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP-NSNY 558
           GH   V  + +   G   AS G+D + ++W   S  P      H + V  V + P  SN 
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 274
Query: 559 VATGSS--DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG--DGNVHMWD 614
           +ATG    D+ I  W+  TG+ V  +    + V +L +S   + + S  G  D N+ +W 
Sbjct: 275 LATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 333
Query: 615 LSNXXXXXXXXXXXDVVRAL--CFSRDGNILASSGQDCSVKLW 655
            S+              R L    S DG IL+++  D ++K W
Sbjct: 334 YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 6/155 (3%)
Query: 508 IKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRT 567
           +K+S  G + +    + +  ++  +S   LR   GH + V C+ +  N + +++GS    
Sbjct: 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGA 197
Query: 568 IRLWDCVTGSH-VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXX 626
           I   D    +H +  L GH + V  L++   G  LAS G D  V +WD  +         
Sbjct: 198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN 257
Query: 627 XXDVVRALCFS-RDGNILASSG--QDCSVKLWDFA 658
               V+A+ +     N+LA+ G   D  +  W+ A
Sbjct: 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 15/247 (6%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSD------------ 428
           ++L   +  V   +IS  + I A    +++I+LW L  +  K +KS D            
Sbjct: 74  WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL--ENGKQIKSIDAGPVDAWTLAFS 131
Query: 429 -QLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLW 487
              Q +        V I    + +   +L      +  +++SPD   L S + D  I ++
Sbjct: 132 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 191
Query: 488 SLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDV 547
            +   + L   +GH  P+  + FSP      +A  D   +++     +      GH S V
Sbjct: 192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 251
Query: 548 DCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD 607
             V F P+  +  + SSD+++++WD  T + V     H+  V+ + ++  G  + S G D
Sbjct: 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD 311
Query: 608 GNVHMWD 614
             +H++D
Sbjct: 312 QEIHIYD 318

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 2/222 (0%)
Query: 439 DILVRIMDERNA--ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV 496
           D LV++   R+   +   +L GH+  V  +  S    +  S S D  IRLW L   + + 
Sbjct: 57  DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK 116
Query: 497 VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNS 556
                    W + FSP   Y A+  H     ++  +S             +  + + P+ 
Sbjct: 117 SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG 176
Query: 557 NYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS 616
            Y+A+G+ D  I ++D  TG  +  L GH  P+ +L+FS   + L +A  DG + ++D+ 
Sbjct: 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Query: 617 NXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
           +             V  + F  D     SS  D SVK+WD  
Sbjct: 237 HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY--KGHGHPVWDIK--- 509
           TL+GH+G V  LSF     +++S S D T ++W        +VY  + H   VWD K   
Sbjct: 99  TLIGHQGNVCSLSFQD--GVVISGSWDKTAKVWK----EGSLVYNLQAHNASVWDAKVVS 152
Query: 510 FSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIR 569
           FS + +  ASA  D+  +LW  D    ++ F G ++DV       +  +  + S+D  I+
Sbjct: 153 FSENKFLTASA--DKTIKLWQNDKV--IKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIK 208
Query: 570 LWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN 617
           L D  TG  +R   GH++ VY +     G  + S G D  V +W   N
Sbjct: 209 LVDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKEN 255

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 127/348 (36%), Gaps = 71/348 (20%)
Query: 336 PNAPPVDRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEI 395
           P+ P   R     L ++   DK++     T   T+   SL     YT      Q T A+ 
Sbjct: 11  PSLPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT--EHSHQTTVAKT 67
Query: 396 SEDVSILAVGFSESYIKLWSLVPQKLKAMKS-----SDQLQDIEMECDDILVRIMDER-- 448
           S      A G     +++W    Q    +K+     S  ++DI  + +   +  + E   
Sbjct: 68  SPSGYYCASGDVHGNVRIWDTT-QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE 126
Query: 449 ---------NAETTRTLVGHEGPVRKLSFSPDRSL-LLSCSQDNTIRLWSLLLWRCLVVY 498
                       +   L G    +  + F P R   ++S S DNT+ ++    ++    +
Sbjct: 127 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 186
Query: 499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF-------VGHYSDVDCVQ 551
             H   V  ++++P G  FAS G D    L+         +F       V H   V  + 
Sbjct: 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 246
Query: 552 FHPNSNYVATGSSDRTIRLWDCVT------------------------------------ 575
           + P+   +A+ S+D+TI++W+  T                                    
Sbjct: 247 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 306
Query: 576 -------GSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS 616
                  GS  ++  GH   + ALS S  G+ L SA  +G+++ WD+S
Sbjct: 307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 20/220 (9%)
Query: 459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL-----LLWRCLVVYKGHGHPVWDIKFSPH 513
           H+  V K S  P      S      +R+W       +L   + V+ G   PV DI +   
Sbjct: 60  HQTTVAKTS--PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG---PVKDISWDSE 114
Query: 514 GYYFASAGH--DRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNY-VATGSSDRTIRL 570
               A+ G   +R   ++  D+        G    ++ V F P+  + + +GS D T+ +
Sbjct: 115 SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174
Query: 571 WDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXX------- 623
           ++            H   V+++ ++  G   AS GGDG + +++  +             
Sbjct: 175 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234
Query: 624 XXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDE 663
                  V  L +S DG  +AS+  D ++K+W+ A L  E
Sbjct: 235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 274

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 43/146 (29%)
Query: 456 LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGY 515
           L GHE P+ ++ ++ +  LL SCS+D++  +W  L    L    GH   +W I       
Sbjct: 28  LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSI------- 80
Query: 516 YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT 575
                                         DVDC      + Y  TGS+D +I+LWD   
Sbjct: 81  ------------------------------DVDCF-----TKYCVTGSADYSIKLWDVSN 105
Query: 576 GSHVRLLTGHKAPVYALSFSVCGRFL 601
           G  V        PV  + FS CG + 
Sbjct: 106 GQCVATWKS-PVPVKRVEFSPCGNYF 130

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 93/235 (39%), Gaps = 35/235 (14%)
Query: 455 TLVGHEGPVRKLSFSPDR--SLLLSCSQDNTIRLWSLL--LWRCLVVYKGHGHPVWDIKF 510
           TL GHEGPV ++ ++  +  ++L SCS D  + +W      W  + V+  H   V  +++
Sbjct: 48  TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 511 SPHGY-----YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP----------- 554
           +PH Y       +S G   +       +  P+ +   H   V+   + P           
Sbjct: 108 APHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 555 --NSNYVATGSSDRTIRLW----DCVTGSHVRLLTGHKAPVYALSFS---VCGRFLASAG 605
              S    TG +D  +++W    D  T      L GH   V  +++S   +   +LAS  
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 606 GDGNVHMWDLSN-----XXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLW 655
            D    +W   N                DV+    +S  GN+LA SG D  V LW
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 93/235 (39%), Gaps = 35/235 (14%)
Query: 455 TLVGHEGPVRKLSFSPDR--SLLLSCSQDNTIRLWSL--LLWRCLVVYKGHGHPVWDIKF 510
           TL GHEGPV ++ ++  +  ++L SCS D  + +W      W  + V+  H   V  +++
Sbjct: 50  TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 109
Query: 511 SPHGY-----YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP----------- 554
           +PH Y       +S G   +       +  P+ +   H   V+   + P           
Sbjct: 110 APHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 168
Query: 555 --NSNYVATGSSDRTIRLW----DCVTGSHVRLLTGHKAPVYALSFS---VCGRFLASAG 605
              S    TG +D  +++W    D  T      L GH   V  +++S   +   +LAS  
Sbjct: 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228
Query: 606 GDGNVHMWDLSNXXXXXXXXXXX-----DVVRALCFSRDGNILASSGQDCSVKLW 655
            D    +W   N                DV+    +S  GN+LA SG D  V LW
Sbjct: 229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 89/223 (39%), Gaps = 53/223 (23%)
Query: 442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC-LVVYKG 500
           V++ D +  +  R +  H   V  LS+  +  +L S S+   I    + +    +    G
Sbjct: 171 VQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG 228
Query: 501 HGHPVWDIKFSPHGYYFASAGHDRMARLWAT----DSYHPLRLFVGHYSDVDCVQFHP-N 555
           H   V  ++++P G + AS G+D +  +W +      + PL+ F  H   V  V + P  
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288
Query: 556 SNYVATG--SSDRTIRLWDCVTGS------------------------------------ 577
           SN +ATG  +SDR IR+W+  +G+                                    
Sbjct: 289 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI 348
Query: 578 -------HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW 613
                   V  L GH + V +L+ S  G  +ASA  D  + +W
Sbjct: 349 WKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 523 DRMARLWATDSYHPLRLFV----GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH 578
           D    LW+  S   L+L      G Y  +  V +    NY+A G+S   ++LWD      
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEY--ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 181
Query: 579 VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS-NXXXXXXXXXXXDVVRALCFS 637
           +R +T H A V +LS++     L+S    G++H  D+                V  L ++
Sbjct: 182 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239
Query: 638 RDGNILASSGQDCSVKLWDFA 658
            DG  LAS G D  V +W  A
Sbjct: 240 PDGRHLASGGNDNLVNVWPSA 260

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 89/223 (39%), Gaps = 53/223 (23%)
Query: 442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC-LVVYKG 500
           V++ D +  +  R +  H   V  LS+  +  +L S S+   I    + +    +    G
Sbjct: 182 VQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG 239
Query: 501 HGHPVWDIKFSPHGYYFASAGHDRMARLWAT----DSYHPLRLFVGHYSDVDCVQFHP-N 555
           H   V  ++++P G + AS G+D +  +W +      + PL+ F  H   V  V + P  
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 299
Query: 556 SNYVATG--SSDRTIRLWDCVTGS------------------------------------ 577
           SN +ATG  +SDR IR+W+  +G+                                    
Sbjct: 300 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI 359
Query: 578 -------HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW 613
                   V  L GH + V +L+ S  G  +ASA  D  + +W
Sbjct: 360 WKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 523 DRMARLWATDSYHPLRLFV----GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH 578
           D    LW+  S   L+L      G Y  +  V +    NY+A G+S   ++LWD      
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEY--ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 192
Query: 579 VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS-NXXXXXXXXXXXDVVRALCFS 637
           +R +T H A V +LS++     L+S    G++H  D+                V  L ++
Sbjct: 193 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 250
Query: 638 RDGNILASSGQDCSVKLWDFA 658
            DG  LAS G D  V +W  A
Sbjct: 251 PDGRHLASGGNDNLVNVWPSA 271

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 93/235 (39%), Gaps = 35/235 (14%)
Query: 455 TLVGHEGPVRKLSFSPDR--SLLLSCSQDNTIRLWSL--LLWRCLVVYKGHGHPVWDIKF 510
           TL GHEGPV ++ ++  +  ++L SCS D  + +W      W  + V+  H   V  +++
Sbjct: 48  TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 511 SPHGY-----YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP----------- 554
           +PH Y       +S G   +       +  P+ +   H   V+   + P           
Sbjct: 108 APHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 555 --NSNYVATGSSDRTIRLW----DCVTGSHVRLLTGHKAPVYALSFS---VCGRFLASAG 605
              S    TG +D  +++W    D  T      L GH   V  +++S   +   +LAS  
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 606 GDGNVHMWDLSNXXXXXXXXXXX-----DVVRALCFSRDGNILASSGQDCSVKLW 655
            D    +W   N                DV+    +S  GN+LA SG D  V LW
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 93/235 (39%), Gaps = 35/235 (14%)
Query: 455 TLVGHEGPVRKLSFSPDR--SLLLSCSQDNTIRLWSL--LLWRCLVVYKGHGHPVWDIKF 510
           TL GHEGPV ++ ++  +  ++L SCS D  + +W      W  + V+  H   V  +++
Sbjct: 48  TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 511 SPHGY-----YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP----------- 554
           +PH Y       +S G   +       +  P+ +   H   V+   + P           
Sbjct: 108 APHEYGPMLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 555 --NSNYVATGSSDRTIRLW----DCVTGSHVRLLTGHKAPVYALSFS---VCGRFLASAG 605
              S    TG +D  +++W    D  T      L GH   V  +++S   +   ++AS  
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS 226
Query: 606 GDGNVHMWDLSNXXXXXXXXXXX-----DVVRALCFSRDGNILASSGQDCSVKLW 655
            D    +W   N                DV+    +S  GN+LA SG D  V LW
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 102/258 (39%), Gaps = 52/258 (20%)
Query: 448 RNAETTRTLVG------------HEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSL----- 489
           R AE+TR ++G            H G +  L   P +   +LS   D  I L+ L     
Sbjct: 19  RRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSR 78
Query: 490 -LLWRCLVVYK-GHGHP------VWDIKFSPHGY-YFASAGHDRMARLWATDSYHPLRLF 540
              + C  V   G  HP      V  +++ PH    F S+  D+  ++W T++     +F
Sbjct: 79  QSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF 138
Query: 541 VGHYSDVDCVQFHPNSN---YVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVC 597
                 V      P S     VA G+    ++L D  +GS   +L GH+  + A+S+S  
Sbjct: 139 -NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP- 196
Query: 598 GRF---LASAGGDGNVHMWDL----------------SNXXXXXXXXXXXDVVRALCFSR 638
            R+   LA+A  D  V +WD+                 +             V  LCF+ 
Sbjct: 197 -RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255
Query: 639 DGNILASSGQDCSVKLWD 656
           DG  L + G D  ++LW+
Sbjct: 256 DGLHLLTVGTDNRMRLWN 273

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 92/235 (39%), Gaps = 35/235 (14%)
Query: 455 TLVGHEGPVRKLSFSPDR--SLLLSCSQDNTIRLWSL--LLWRCLVVYKGHGHPVWDIKF 510
           TL GHEGPV ++ ++  +  ++L SCS D  + +W      W  + V+  H   V  +++
Sbjct: 48  TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 511 SPHGY-----YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP----------- 554
           +PH Y       +S G   +       +  P+ +   H   V+   + P           
Sbjct: 108 APHEYGPXLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 555 --NSNYVATGSSDRTIRLW----DCVTGSHVRLLTGHKAPVYALSFS---VCGRFLASAG 605
              S    TG +D  +++W    D  T      L GH   V  +++S   +   + AS  
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVS 226
Query: 606 GDGNVHMWDLSNXXXXXXXXXXX-----DVVRALCFSRDGNILASSGQDCSVKLW 655
            D    +W   N                DV+    +S  GN+LA SG D  V LW
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 50/169 (29%)
Query: 495 LVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWAT----DSYHPLRLFVGHYSDVDCV 550
           +    GH   V  ++++P G + AS G+D +  +W +      + PL+ F  H   V  V
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 551 QFHP-NSNYVATG--SSDRTIRLWDCVTGS------------------------------ 577
            + P  SN +ATG  +SDR IR+W+  +G+                              
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 262
Query: 578 -------------HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW 613
                         V  L GH + V +L+ S  G  +ASA  D  + +W
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 523 DRMARLWATDSYHPLRLFV----GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH 578
           D    LW+  S   L+L      G Y  +  V +    NY+A G+S   ++LWD      
Sbjct: 44  DNSVYLWSASSGDILQLLQMEQPGEY--ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101
Query: 579 VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS-NXXXXXXXXXXXDVVRALCFS 637
           +R +T H A V +LS++     L+S    G++H  D+                V  L ++
Sbjct: 102 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159
Query: 638 RDGNILASSGQDCSVKLWDFA 658
            DG  LAS G D  V +W  A
Sbjct: 160 PDGRHLASGGNDNLVNVWPSA 180

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 56/270 (20%)
Query: 441 LVRIMDERNAETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVY- 498
           ++RI++    +  +  VGH   + +L F P D +LLLS S+D+ +RLW++     + ++ 
Sbjct: 132 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 191
Query: 499 --KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS------------YHP---LRLFV 541
             +GH   V    +   G    S G D   +LW  +S            Y+P    R F+
Sbjct: 192 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 251
Query: 542 G---HYSD----------VDCVQFHPNSNYVATGSSDRTIRLW---------DCV--TGS 577
               H+ D          VDCV++    + + + S +  I  W         D +  + S
Sbjct: 252 SQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 309
Query: 578 HVRLLTGH---KAPVYALSFSV--CGRFLASAGGDGNVHMWDL------SNXXXXXXXXX 626
           +V +L      +  ++ + FS+    + LA     G +++WDL                 
Sbjct: 310 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 369
Query: 627 XXDVVRALCFSRDGNILASSGQDCSVKLWD 656
               +R   FSRD +IL +   D S+  WD
Sbjct: 370 CGAAIRQTSFSRDSSILIAVCDDASIWRWD 399

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 56/270 (20%)
Query: 441 LVRIMDERNAETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVY- 498
           ++RI++    +  +  VGH   + +L F P D +LLLS S+D+ +RLW++     + ++ 
Sbjct: 96  IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 155
Query: 499 --KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS------------YHP---LRLFV 541
             +GH   V    +   G    S G D   +LW  +S            Y+P    R F+
Sbjct: 156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 215
Query: 542 G---HYSD----------VDCVQFHPNSNYVATGSSDRTIRLW---------DCV--TGS 577
               H+ D          VDCV++    + + + S +  I  W         D +  + S
Sbjct: 216 SQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 273
Query: 578 HVRLLTGH---KAPVYALSFSV--CGRFLASAGGDGNVHMWDL------SNXXXXXXXXX 626
           +V +L      +  ++ + FS+    + LA     G +++WDL                 
Sbjct: 274 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333
Query: 627 XXDVVRALCFSRDGNILASSGQDCSVKLWD 656
               +R   FSRD +IL +   D S+  WD
Sbjct: 334 CGAAIRQTSFSRDSSILIAVCDDASIWRWD 363

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 56/270 (20%)
Query: 441 LVRIMDERNAETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVY- 498
           ++RI++    +  +  VGH   + +L F P D +LLLS S+D+ +RLW++     + ++ 
Sbjct: 91  IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 150
Query: 499 --KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS------------YHP---LRLFV 541
             +GH   V    +   G    S G D   +LW  +S            Y+P    R F+
Sbjct: 151 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 210
Query: 542 G---HYSD----------VDCVQFHPNSNYVATGSSDRTIRLW---------DCV--TGS 577
               H+ D          VDCV++    + + + S +  I  W         D +  + S
Sbjct: 211 SQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 268
Query: 578 HVRLLTGH---KAPVYALSFSV--CGRFLASAGGDGNVHMWDL------SNXXXXXXXXX 626
           +V +L      +  ++ + FS+    + LA     G +++WDL                 
Sbjct: 269 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 328
Query: 627 XXDVVRALCFSRDGNILASSGQDCSVKLWD 656
               +R   FSRD +IL +   D S+  WD
Sbjct: 329 CGAAIRQTSFSRDSSILIAVCDDASIWRWD 358

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 28/229 (12%)
Query: 500 GHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDS-------YHPLRLFVGHYSDVDCVQ 551
           GH  PV DI + PH     AS   D    +W             P+    GH   V  V 
Sbjct: 79  GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 552 FHPNS-NYVATGSSDRTIRLWDCVTGSHVRLLTG--HKAPVYALSFSVCGRFLASAGGDG 608
           +HP + N + +   D  I +WD  TG+ V  L    H   +Y++ +S  G  + ++  D 
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 609 NVHMWDLSNXXXXXXXXXXXDVVRAL--CFSRDGNILASSGQDCS---VKLWDFAKLSDE 663
            V + +              +  R +   F  +G IL +     S   V LWD   L + 
Sbjct: 199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP 258
Query: 664 VGTEEVNLSHSADI----KNSSLAYL-------VRSYK-TKASPLLHLI 700
           +  +E++ S    +     ++++ YL       +R ++ T  +P LH +
Sbjct: 259 LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYL 307

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 56/270 (20%)
Query: 441 LVRIMDERNAETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVY- 498
           ++RI++    +  +  VGH   + +L F P D +LLLS S+D+ +RLW++     + ++ 
Sbjct: 95  IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 154
Query: 499 --KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS------------YHP---LRLFV 541
             +GH   V    +   G    S G D   +LW  +S            Y+P    R F+
Sbjct: 155 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 214
Query: 542 G---HYSD----------VDCVQFHPNSNYVATGSSDRTIRLW---------DCV--TGS 577
               H+ D          VDCV++    + + + S +  I  W         D +  + S
Sbjct: 215 SQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 272
Query: 578 HVRLLTGH---KAPVYALSFSV--CGRFLASAGGDGNVHMWDL------SNXXXXXXXXX 626
           +V +L      +  ++ + FS+    + LA     G +++WDL                 
Sbjct: 273 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 332
Query: 627 XXDVVRALCFSRDGNILASSGQDCSVKLWD 656
               +R   FSRD +IL +   D S+  WD
Sbjct: 333 CGAAIRQTSFSRDSSILIAVCDDASIWRWD 362

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 110/270 (40%), Gaps = 56/270 (20%)
Query: 441 LVRIMDERNAETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVY- 498
           ++RI++    +  +  VGH   + +L F P D +LLLS S+D+ +RLW++     + ++ 
Sbjct: 95  IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 154
Query: 499 --KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS------------YHP---LRLFV 541
             +GH   V    +   G    S G D   +LW  +S            Y+P    R F+
Sbjct: 155 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 214
Query: 542 G---HYSD----------VDCVQFHPNSNYVATGSSDRTIRLW---------DCV--TGS 577
               H+ D          VDCV++    + + + S +  I  W         D +  + S
Sbjct: 215 SQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 272
Query: 578 HVRLLTGH---KAPVYALSFSV--CGRFLASAGGDGNVHMWDL------SNXXXXXXXXX 626
           +V +L      +  ++ + FS     + LA     G +++WDL                 
Sbjct: 273 NVTILGRFDYSQCDIWYMRFSTDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 332
Query: 627 XXDVVRALCFSRDGNILASSGQDCSVKLWD 656
               +R   FSRD +IL +   D S+  WD
Sbjct: 333 CGAAIRQTSFSRDSSILIAVCDDASIWRWD 362

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 28/229 (12%)
Query: 500 GHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDS-------YHPLRLFVGHYSDVDCVQ 551
           GH  PV DI + PH     AS   D    +W             P+    GH   V  V 
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 552 FHPNS-NYVATGSSDRTIRLWDCVTGSHVRLLTG--HKAPVYALSFSVCGRFLASAGGDG 608
           +HP + N + +   D  I +WD  TG+ V  L    H   +Y++ +S  G  + ++  D 
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 609 NVHMWDLSNXXXXXXXXXXXDVVRAL--CFSRDGNILASSGQDCS---VKLWDFAKLSDE 663
            V + +              +  R +   F  +G IL +     S   V LWD   L + 
Sbjct: 199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP 258
Query: 664 VGTEEVNLSHSADI----KNSSLAYL-------VRSYK-TKASPLLHLI 700
           +  +E++ S    +     ++++ YL       +R ++ T  +P LH +
Sbjct: 259 LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYL 307

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 104/271 (38%), Gaps = 39/271 (14%)
Query: 439 DILVRIMDERNAETT--RTLVGHEGPVRKLSFSPD--RSLLLSCSQDNTIRLW--SLLLW 492
           D  V+I D RN        L GHEGPV +++++     ++L SCS D  + +W      W
Sbjct: 34  DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW 93
Query: 493 RCLVVYKGHGHPVWDIKFSPHGYYF-----ASAGHDRMARLWATDSYHPLRLFVGHYSDV 547
                + GH   V  + ++PH Y       +S G   +        +   ++   H    
Sbjct: 94  EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGC 153
Query: 548 DCVQF-----------HPNS---NYV---ATGSSDRTIRLWDCVTGSHVR---LLTGHKA 587
           + V +           HP+    NY+   A+G  D  I+LW        +    L  H  
Sbjct: 154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD 213
Query: 588 PV----YALSFSVCGRFLASAGGDGNVHMWDL----SNXXXXXXXXXXXDVVRALCFSRD 639
            V    +A S  +    +AS   DG V +W      SN           DVV  + +S  
Sbjct: 214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT 273
Query: 640 GNILASSGQDCSVKLWDFAKLSDEVGTEEVN 670
            NILA SG D  V LW  +     V   +VN
Sbjct: 274 ANILAVSGGDNKVTLWKESVDGQWVCISDVN 304

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 39/90 (43%)
Query: 499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNY 558
           + H   +  +KF P G    S+  D   ++W+       R  +GH + V  +        
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 559 VATGSSDRTIRLWDCVTGSHVRLLTGHKAP 588
           V + S D TIRLW+C TG+ +      + P
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENP 222

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLA 602
           H S++  ++F P+   + + S D  +++W    GS+ R L GH+A V  ++    GR + 
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 194
Query: 603 SAGGDGNVHMWD 614
           SA  DG + +W+
Sbjct: 195 SASLDGTIRLWE 206

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 39/90 (43%)
Query: 499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNY 558
           + H   +  +KF P G    S+  D   ++W+       R  +GH + V  +        
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 559 VATGSSDRTIRLWDCVTGSHVRLLTGHKAP 588
           V + S D TIRLW+C TG+ +      + P
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENP 225

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLA 602
           H S++  ++F P+   + + S D  +++W    GS+ R L GH+A V  ++    GR + 
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197
Query: 603 SAGGDGNVHMWD 614
           SA  DG + +W+
Sbjct: 198 SASLDGTIRLWE 209

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/289 (17%), Positives = 101/289 (34%), Gaps = 49/289 (16%)
Query: 388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDE 447
            QVTC   S D + +  G     ++LW+     L  +                       
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNF--------------------- 147
Query: 448 RNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK-------- 499
                      H  P+  + ++ D + ++S   +N   LW+++    +  ++        
Sbjct: 148 -----------HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196
Query: 500 -------GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQF 552
                  G G    D+++      F   G      ++      P    +GH+  +  ++F
Sbjct: 197 INAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEF 255
Query: 553 HPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHM 612
           +  +  + + S D T+R+W    G+      GH   + + S+ V    + S   DG+V +
Sbjct: 256 NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW-VGDDKVISCSMDGSVRL 314
Query: 613 WDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS 661
           W L               + A   S+DG   A +  D  V ++D  KL+
Sbjct: 315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 466 LSFSPDR---SLLLSCSQDNTIRLWSLLLWRCLV--VYKGHGHPVWDIKFSPHGYYFASA 520
           LSFSP     + L++ S  N +R W +      +    + H  PV D+ +S  G    +A
Sbjct: 45  LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104
Query: 521 GHDRMARLWATDSYHPLRLFVGHYSDVDCVQF--HPNSNYVATGSSDRTIRLWD 572
             D+ A++W   S   +++   H + V  + +   PN + V TGS D+T++ WD
Sbjct: 105 SCDKTAKMWDLSSNQAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 89/243 (36%), Gaps = 9/243 (3%)
Query: 463 VRKLSFSPDRSLLLSCSQDNTIRLWSLL--LWRCLVVYKGHGHPVWDIKFSPHGYYFASA 520
           +R     PD   L+   + +T+ +W L     R            + +  SP      S 
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 521 GHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR 580
             D    +W   +   +R F GH     C+    +   + TG  D T+R WD   G   R
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---R 216
Query: 581 LLTGH--KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSR 638
            L  H   + +++L +   G +LA      NV +  + N             V +L F+ 
Sbjct: 217 QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV-NKPDKYQLHLHESCVLSLKFAY 275
Query: 639 DGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLH 698
            G    S+G+D  +  W     +    ++E +   S DI      Y+V     K + +  
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD-KYIVTGSGDKKATVYE 334
Query: 699 LIF 701
           +I+
Sbjct: 335 VIY 337

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	711
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2j49_A	148	Transcription initiation factor TFIID subunit 5; n	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2j4b_A	138	TAF5, transcription initiation factor TFIID subuni	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.98
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.98
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.98
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.98
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.79
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.78
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.73
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.73
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.7
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.7
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.69
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.68
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.68
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.68
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.66
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.66
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.62
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.62
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.6
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.58
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.58
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.58
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.57
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.55
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.55
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.55
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.54
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.54
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.51
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.51
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.5
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.47
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.46
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.45
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.45
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.45
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.44
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.43
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.41
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.4
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.37
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.35
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.33
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.32
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.3
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.26
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.24
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.24
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.24
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.22
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.2
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.2
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.2
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.19
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.18
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.16
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.14
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.14
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.13
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.07
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.04
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.03
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.01
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.0
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.99
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.92
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.89
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.88
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.86
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.83
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.8
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.77
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.76
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.75
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.73
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.72
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.72
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.7
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.7
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.7
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.61
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.59
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.57
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.57
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.57
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.56
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.55
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.53
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.51
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.51
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.51
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.51
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.48
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.48
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.45
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.45
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.44
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.4
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.39
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.37
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.35
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.33
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.3
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.28
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.25
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.25
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.23
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.22
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.17
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.1
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.08
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.07
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.02
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.01
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.97
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.97
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.92
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.85
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.84
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.8
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.75
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.75
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.72
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.67
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.64
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.63
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.61
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.6
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.52
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.52
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.47
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.47
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.44
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.41
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.4
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.38
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.38
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.34
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.33
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.31
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.28
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.23
3ott_A	758	Two-component system sensor histidine kinase; beta	97.2
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.2
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.08
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.07
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.92
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.88
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.76
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.75
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.72
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.69
3ott_A	758	Two-component system sensor histidine kinase; beta	96.64
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.62
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.61
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.59
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.51
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.46
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.41
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.16
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.92
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.91
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.8
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.74
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.58
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.49
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.42
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.22
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.18
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.17
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.99
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.79
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.71
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.37
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.33
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	93.04
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.85
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.48
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	90.81
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.71
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	88.8
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	85.59
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	84.3
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	83.77
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	82.93

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-43  Score=391.02  Aligned_cols=279  Identities=25%  Similarity=0.469  Sum_probs=262.7

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------eeeeccCccccccccccCCcEEEEEecC
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-----------LKAMKSSDQLQDIEMECDDILVRIMDER  448 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-----------~~~~~~~~~~~~l~~~~~d~~i~i~d~~  448 (711)
                      .+++.+|.+.|+|++|+|++++||+|+.||+|+|||+.+++           +..+.++.+...++.++.|+.|++||..
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            34678999999999999999999999999999999997654           3334555667788899999999999999


Q ss_pred             CCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEE
Q psy14440        449 NAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARL  528 (711)
Q Consensus       449 ~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~l  528 (711)
                      +++.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+.++.++..+.+|...|.++.|++++.+|++|+.|++|++
T Consensus       181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~v  260 (410)
T 1vyh_C          181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV  260 (410)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCceeEEeecCCCCeeEEEEcCC--------------------CCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCC
Q psy14440        529 WATDSYHPLRLFVGHYSDVDCVQFHPN--------------------SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAP  588 (711)
Q Consensus       529 wd~~~~~~~~~~~~h~~~V~~v~~sp~--------------------~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~  588 (711)
                      ||+.++.....+.+|...|.+++|+|+                    +.+|++|+.|++|++||++++.++..+.+|...
T Consensus       261 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~  340 (410)
T 1vyh_C          261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW  340 (410)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             EECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCc
Confidence            999999999999999999999999996                    678999999999999999999999999999999


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        589 VYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       589 I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      |++++|+++|++|++|+.||.|++||+.+++++..+.+|.+.|++++|++++.+|++|+.||+|+||+++
T Consensus       341 v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999963

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.7e-43  Score=372.34  Aligned_cols=281  Identities=20%  Similarity=0.340  Sum_probs=260.2

Q ss_pred             eEEEEEecCCCceEEEEECCC----CCEEEEEeCCCeEEEEeCCCCce-------------eeeccCccccccccccCCc
Q psy14440        378 IACYTLLNARQQVTCAEISED----VSILAVGFSESYIKLWSLVPQKL-------------KAMKSSDQLQDIEMECDDI  440 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~d----g~~LatG~~dg~I~vWdl~~~~~-------------~~~~~~~~~~~l~~~~~d~  440 (711)
                      +.+..+.+|.+.|++++|+++    +.+||+|+.|++|+||++.....             ..+..+.+...++.++.|+
T Consensus        23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~  102 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA  102 (321)
T ss_dssp             EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence            445567799999999999974    67999999999999999865432             2233445566778889999


Q ss_pred             EEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEE
Q psy14440        441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASA  520 (711)
Q Consensus       441 ~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sg  520 (711)
                      .|++||..+++.+..+..|...+.+++|+|++++|++|+.||+|++|++.+++....+..|...|.+++|+|+|++|++|
T Consensus       103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG  182 (321)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCE
Q psy14440        521 GHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRF  600 (711)
Q Consensus       521 s~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~  600 (711)
                      +.||.|++||+++++.+..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+.+|...|.+++|+|+|++
T Consensus       183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~  262 (321)
T 3ow8_A          183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH  262 (321)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE
T ss_pred             cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        601 LASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       601 Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      |++|+.||+|+|||+.+++++..+.+|.+.|++++|+++|++|++++.||+|+|||+.
T Consensus       263 l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          263 FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999999999999999999999999999999999999963

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.2e-42  Score=368.58  Aligned_cols=279  Identities=24%  Similarity=0.379  Sum_probs=256.8

Q ss_pred             ceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------eeeeccCccccccccccCCcEEEEE
Q psy14440        377 SIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-----------LKAMKSSDQLQDIEMECDDILVRIM  445 (711)
Q Consensus       377 s~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-----------~~~~~~~~~~~~l~~~~~d~~i~i~  445 (711)
                      ..+..++.+|.+.|++++|++|+++||+|+.||.|+|||+.+.+           +..+.++++...++.++.++.+++|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            34567899999999999999999999999999999999987654           2334456677788899999999999


Q ss_pred             ecCCC----eeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE
Q psy14440        446 DERNA----ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG  521 (711)
Q Consensus       446 d~~~~----~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs  521 (711)
                      +..+.    .....+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+|...|++++|+|++.+|++|+
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~  203 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe
Confidence            98764    45678889999999999998775 89999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC--CCCCeEEEEEecCCC
Q psy14440        522 HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG--HKAPVYALSFSVCGR  599 (711)
Q Consensus       522 ~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~--h~~~I~~la~spdg~  599 (711)
                      .|++|++||++++..+..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+..  +...|++++|+|+|+
T Consensus       204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  283 (340)
T 1got_B          204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred             CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence            999999999999999999999999999999999999999999999999999999988877753  335799999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        600 FLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       600 ~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      +|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+++|.+|++|+.||+|+|||
T Consensus       284 ~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999999999999999999999999999999999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.7e-42  Score=362.25  Aligned_cols=276  Identities=20%  Similarity=0.331  Sum_probs=249.7

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      ..++.+|.+.|++++|+||+++||+|+.||.|+|||+.                               ++...+.+.+|
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~-------------------------------~~~~~~~~~~~   54 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE-------------------------------TQVEVRSIQVT   54 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETT-------------------------------TTEEEEEEECC
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECC-------------------------------CCceeEEeecc
Confidence            45789999999999999999999999999999999984                               34456778889


Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-ceeE
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY-HPLR  538 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~-~~~~  538 (711)
                      ..+|.+++|++++++|++|+.|++|++||+.+++++..+.+|...|++++|+|++.+|++|+.||+|++||++++ ....
T Consensus        55 ~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~  134 (304)
T 2ynn_A           55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ  134 (304)
T ss_dssp             SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE
T ss_pred             CCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999877 4556


Q ss_pred             EeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEee-CCCCCeEEEEEec--CCCEEEEEeCCCcEEEEE
Q psy14440        539 LFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLT-GHKAPVYALSFSV--CGRFLASAGGDGNVHMWD  614 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~-~h~~~I~~la~sp--dg~~Lasgs~Dg~I~iwD  614 (711)
                      .+.+|...|.+++|+| ++.+|++|+.|++|++||++++.....+. +|...+..++|++  ++.+|++|+.||+|++||
T Consensus       135 ~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd  214 (304)
T 2ynn_A          135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD  214 (304)
T ss_dssp             EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEE
T ss_pred             hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEe
Confidence            7889999999999999 67899999999999999998887665554 5668899999987  788999999999999999


Q ss_pred             CCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCc
Q psy14440        615 LSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKAS  694 (711)
Q Consensus       615 l~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~  694 (711)
                      +++++++..+.+|...|.+++|+|++.+|++|+.||+|+|||+.+.                       .++.++..+..
T Consensus       215 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~-----------------------~~~~~~~~~~~  271 (304)
T 2ynn_A          215 YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-----------------------KVEKTLNVGLE  271 (304)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-----------------------CEEEEECCSSS
T ss_pred             CCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC-----------------------ceeeeccCCCc
Confidence            9999999999999999999999999999999999999999998652                       34456777788


Q ss_pred             ceEEEEEccCCe--eee
Q psy14440        695 PLLHLIFSRRNI--LLR  709 (711)
Q Consensus       695 pV~~v~Fs~~n~--lla  709 (711)
                      .|.+++|++++.  ++|
T Consensus       272 ~~~~~~~~~~~~~~~~a  288 (304)
T 2ynn_A          272 RSWCIATHPTGRKNYIA  288 (304)
T ss_dssp             SEEEEEECTTCGGGCEE
T ss_pred             cEEEEEECCCCCceEEE
Confidence            999999988764  455

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2e-41  Score=365.77  Aligned_cols=280  Identities=24%  Similarity=0.385  Sum_probs=256.7

Q ss_pred             ceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-----------eeeccCccccccccccCCcEEEEE
Q psy14440        377 SIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKL-----------KAMKSSDQLQDIEMECDDILVRIM  445 (711)
Q Consensus       377 s~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~-----------~~~~~~~~~~~l~~~~~d~~i~i~  445 (711)
                      .....++.+|.+.|+|++|++|+++||+|+.||+|+|||..+.+.           ..+.++++...++.++.++.+++|
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            345678999999999999999999999999999999999866542           334566777888999999999999


Q ss_pred             ecCCC------eeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcC--CCCEE
Q psy14440        446 DERNA------ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP--HGYYF  517 (711)
Q Consensus       446 d~~~~------~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp--~g~~l  517 (711)
                      +....      .....+.+|.+.|.+++|++++..|++|+.|++|++||+.+++++..+.+|...|.+++|++  +|++|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence            86532      34567789999999999999999999999999999999999999999999999999999987  57899


Q ss_pred             EEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC--CCCeEEEEEe
Q psy14440        518 ASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH--KAPVYALSFS  595 (711)
Q Consensus       518 ~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h--~~~I~~la~s  595 (711)
                      ++|+.||+|++||+++++.+..+.+|...|.+++|+|++++|++|+.|++|++||+++++.+..+..+  ...+++++|+
T Consensus       214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s  293 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS  293 (354)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999888777644  3578999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        596 VCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       596 pdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      ++|++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|+|++|++|+.||+|+||+
T Consensus       294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          294 LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999999999999999999999999999999999999999999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.6e-41  Score=363.91  Aligned_cols=272  Identities=24%  Similarity=0.248  Sum_probs=234.6

Q ss_pred             cCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCC----------------------CceeeeccCccccccccccCCcEE
Q psy14440        385 NARQQVTCAEISEDVSILAVGFSESYIKLWSLVP----------------------QKLKAMKSSDQLQDIEMECDDILV  442 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~----------------------~~~~~~~~~~~~~~l~~~~~d~~i  442 (711)
                      .|...|.+++|++||++|++|+ |+++++|+...                      ..+..+.++.+ ..++.++.++.|
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s~dg~v  105 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVASDSGAV  105 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEETTSEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEECCCEE
Confidence            4667899999999999999887 66788886311                      01223444444 457788999999


Q ss_pred             EEEecCCCeeEE----EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCC-CEE
Q psy14440        443 RIMDERNAETTR----TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG-YYF  517 (711)
Q Consensus       443 ~i~d~~~~~~~~----~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g-~~l  517 (711)
                      ++||..+++...    .+.+|.+.|++++|+++|++|++|+.||+|++||+.+++++..+.+|...|++++|++++ .+|
T Consensus       106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  185 (344)
T 4gqb_B          106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF  185 (344)
T ss_dssp             EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred             EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence            999998876543    345899999999999999999999999999999999999999999999999999999987 588


Q ss_pred             EEEECCCeEEEEECCCCceeEEee--cCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEE
Q psy14440        518 ASAGHDRMARLWATDSYHPLRLFV--GHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSF  594 (711)
Q Consensus       518 ~sgs~Dg~i~lwd~~~~~~~~~~~--~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~  594 (711)
                      ++|+.|++|++||+++++....+.  .|...+.+++|+| ++++|++|+.||+|++||++++++++.+.+|...|++++|
T Consensus       186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f  265 (344)
T 4gqb_B          186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF  265 (344)
T ss_dssp             EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred             eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            999999999999999999888764  4566799999999 5678999999999999999999999999999999999999


Q ss_pred             ecCC-CEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEeCCC
Q psy14440        595 SVCG-RFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGN-ILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       595 spdg-~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~-~Lasgs~Dg~V~iWdl~~  659 (711)
                      +|+| ++|++|+.||+|+|||+.+++++ .+.+|.+.|++++|+|++. +|++||.||+|++|++..
T Consensus       266 sp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          266 SPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             CSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             ccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            9998 58999999999999999998865 5789999999999999886 678999999999999975

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1e-40  Score=386.74  Aligned_cols=277  Identities=22%  Similarity=0.347  Sum_probs=236.6

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-------------eeeeccCccccccccccCC----cEE
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-------------LKAMKSSDQLQDIEMECDD----ILV  442 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-------------~~~~~~~~~~~~l~~~~~d----~~i  442 (711)
                      ..++.+|.+.|++++|||||++||+|+.||+|+|||+.+..             +..+.++++...++.++.+    +.+
T Consensus        52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v  131 (611)
T 1nr0_A           52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV  131 (611)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred             CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence            45678999999999999999999999999999999985321             3345566666667665543    578


Q ss_pred             EEEecCCCeeEEEeecccCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE
Q psy14440        443 RIMDERNAETTRTLVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG  521 (711)
Q Consensus       443 ~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~-~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs  521 (711)
                      ++||  .+.....+.+|.+.|++++|+|++. .|++|+.|++|++||..++++...+.+|...|++++|+|+|++|++|+
T Consensus       132 ~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s  209 (611)
T 1nr0_A          132 FLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG  209 (611)
T ss_dssp             EETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE
Confidence            8887  4556678899999999999999987 599999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEECCCCceeEEee-------cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-------------
Q psy14440        522 HDRMARLWATDSYHPLRLFV-------GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRL-------------  581 (711)
Q Consensus       522 ~Dg~i~lwd~~~~~~~~~~~-------~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~-------------  581 (711)
                      .|++|++||..+++.+..+.       +|...|.+++|+|++++|++|+.|++|++||+.+++++..             
T Consensus       210 ~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~  289 (611)
T 1nr0_A          210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG  289 (611)
T ss_dssp             TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred             CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence            99999999999999888874       7999999999999999999999999999999998765543             


Q ss_pred             ------------------------------eeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEe-eCCCCC
Q psy14440        582 ------------------------------LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLL-TGHTDV  630 (711)
Q Consensus       582 ------------------------------~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l-~~h~~~  630 (711)
                                                    +.+|...|++++|+|+|++|++|+.||+|++||+.+++....+ .+|...
T Consensus       290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~  369 (611)
T 1nr0_A          290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM  369 (611)
T ss_dssp             EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSC
T ss_pred             EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcce
Confidence                                          3579999999999999999999999999999999998876655 457777


Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        631 VRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       631 V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      |.+++|++++ .|++++.|++|++|++..
T Consensus       370 v~~~~~s~~~-~l~s~s~d~~v~~w~~~~  397 (611)
T 1nr0_A          370 ITGIKTTSKG-DLFTVSWDDHLKVVPAGG  397 (611)
T ss_dssp             EEEEEECTTS-CEEEEETTTEEEEECSSS
T ss_pred             EEEEEECCCC-cEEEEEcCCceEEeecCC
Confidence            7777777544 456666777777776543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.3e-41  Score=368.60  Aligned_cols=285  Identities=24%  Similarity=0.441  Sum_probs=255.5

Q ss_pred             CceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-----------eeeccCccccccccccCCcEEEE
Q psy14440        376 PSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKL-----------KAMKSSDQLQDIEMECDDILVRI  444 (711)
Q Consensus       376 ps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~-----------~~~~~~~~~~~l~~~~~d~~i~i  444 (711)
                      ...+..++.+|.+.|+|++|+|++++||+|+.||+|+|||+.+.+.           ..+.++++...++.++.|+.+++
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i  134 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI  134 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence            3567889999999999999999999999999999999999876542           23445667788899999999999


Q ss_pred             EecCCC-------eeEEEeecccCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEE-----ecCCCCEEEEEEc
Q psy14440        445 MDERNA-------ETTRTLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLLLWRCLVVY-----KGHGHPVWDIKFS  511 (711)
Q Consensus       445 ~d~~~~-------~~~~~l~~h~~~V~~l~fspdg-~~L~s~s~Dg~V~iwdl~t~~~~~~~-----~~h~~~V~~v~~s  511 (711)
                      |+..+.       .....+.+|.+.|.++.|++++ ..|++|+.|++|++||+.+++.+..+     .+|...|.+++|+
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            997543       2345688999999999999974 57999999999999999999999888     6799999999998


Q ss_pred             C-CCCEEEEEECCCeEEEEECC-CCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCC---
Q psy14440        512 P-HGYYFASAGHDRMARLWATD-SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHK---  586 (711)
Q Consensus       512 p-~g~~l~sgs~Dg~i~lwd~~-~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~---  586 (711)
                      + ++++|++|+.|++|++||++ ....+..+.+|...|.+++|+|++++|++|+.||+|++||+++++++..+..+.   
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence            7 88999999999999999998 557888999999999999999999999999999999999999999998886543   


Q ss_pred             ----CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEe----eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        587 ----APVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLL----TGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       587 ----~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l----~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                          ..|++++|+++|++|++|+.||.|++||+.+++.+..+    .+|.+.|++++|+++|++|++||.||+|+||++.
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence                24899999999999999999999999999999988877    6899999999999999999999999999999987


Q ss_pred             CC
Q psy14440        659 KL  660 (711)
Q Consensus       659 ~~  660 (711)
                      ..
T Consensus       375 ~~  376 (380)
T 3iz6_a          375 GH  376 (380)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.9e-40  Score=359.84  Aligned_cols=278  Identities=27%  Similarity=0.483  Sum_probs=251.1

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------------------------eeeeccCccc
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-----------------------------LKAMKSSDQL  430 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-----------------------------~~~~~~~~~~  430 (711)
                      +....+|.+.|+|++|||||++||+|+ ++.|+||++.+++                             +..+.++.+.
T Consensus        57 ~~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg  135 (393)
T 1erj_A           57 LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG  135 (393)
T ss_dssp             EEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred             eEEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC
Confidence            444567999999999999999999987 6889999986643                             2344556677


Q ss_pred             cccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEE
Q psy14440        431 QDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKF  510 (711)
Q Consensus       431 ~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~  510 (711)
                      ..++.++.|+.|++||..+++....+.+|.+.|++++|++++++|++|+.|++|++||+.++++...+. +...+.+++|
T Consensus       136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~  214 (393)
T 1erj_A          136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAV  214 (393)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEE
Confidence            788889999999999999999999999999999999999999999999999999999999999888876 5678999999


Q ss_pred             cC-CCCEEEEEECCCeEEEEECCCCceeEEe-------ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-------
Q psy14440        511 SP-HGYYFASAGHDRMARLWATDSYHPLRLF-------VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT-------  575 (711)
Q Consensus       511 sp-~g~~l~sgs~Dg~i~lwd~~~~~~~~~~-------~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~-------  575 (711)
                      +| ++++|++|+.||+|++||++++..+..+       .+|...|.+++|+|++++|++|+.||+|++||+++       
T Consensus       215 ~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~  294 (393)
T 1erj_A          215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS  294 (393)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccc
Confidence            99 8999999999999999999998887766       57999999999999999999999999999999975       


Q ss_pred             -----CcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeC------CCCEEE
Q psy14440        576 -----GSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSR------DGNILA  644 (711)
Q Consensus       576 -----~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fsp------dg~~La  644 (711)
                           +.+...+.+|...|.+++|++++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++      ++++|+
T Consensus       295 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~  374 (393)
T 1erj_A          295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA  374 (393)
T ss_dssp             ------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred             cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEE
Confidence                 345677889999999999999999999999999999999999999999999999999999986      688999


Q ss_pred             EEeCCCcEEEEeCCC
Q psy14440        645 SSGQDCSVKLWDFAK  659 (711)
Q Consensus       645 sgs~Dg~V~iWdl~~  659 (711)
                      +|+.||+|+||++..
T Consensus       375 sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          375 TGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEETTSEEEEEEEEE
T ss_pred             EECCCCcEEECcccc
Confidence            999999999999865

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.4e-40  Score=351.55  Aligned_cols=290  Identities=21%  Similarity=0.348  Sum_probs=244.5

Q ss_pred             eEEEEEecCCC-ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        378 IACYTLLNARQ-QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       378 ~~~~tl~~h~~-~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      .++.++.+|.+ .|++++|+|||++||+|+.|+.|+||++.+....                            ......
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~----------------------------~~~~~~   57 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI----------------------------CKSVLS   57 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE----------------------------EEEEEC
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce----------------------------eeeeec
Confidence            35678889988 9999999999999999999999999997543211                            011223


Q ss_pred             ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW--RCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~--~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      .+|.+.|.+++|+|++++|++|+.|++|++|++.+.  +++..+.+|...|++++|+|++++|++|+.|++|++||++++
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence            589999999999999999999999999999999766  567889999999999999999999999999999999999876


Q ss_pred             c---eeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc--EEEEeeCCCCCeEEEEEecCCCEEEEEeCCCc
Q psy14440        535 H---PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS--HVRLLTGHKAPVYALSFSVCGRFLASAGGDGN  609 (711)
Q Consensus       535 ~---~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~--~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~  609 (711)
                      .   .+..+.+|...|.+++|+|++++|++|+.|++|++||+.+++  +...+.+|...|++++|+|+|++|++|+.||+
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~  217 (345)
T 3fm0_A          138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT  217 (345)
T ss_dssp             SCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe
Confidence            4   456778999999999999999999999999999999998875  45788899999999999999999999999999


Q ss_pred             EEEEECCC---------------CeEEEEeeC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcccccccc
Q psy14440        610 VHMWDLSN---------------GHLLTLLTG-HTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSH  673 (711)
Q Consensus       610 I~iwDl~s---------------g~~i~~l~~-h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~  673 (711)
                      |+|||...               .+++..+.+ |...|++++|++++..|++++.|+.|++|++.........       
T Consensus       218 v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-------  290 (345)
T 3fm0_A          218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP-------  290 (345)
T ss_dssp             EEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC-------
T ss_pred             EEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee-------
Confidence            99999632               234555655 8889999999999999999999999999998753321110       


Q ss_pred             ccccccccccceeeecccCCcceEEEEEccCCe-eee
Q psy14440        674 SADIKNSSLAYLVRSYKTKASPLLHLIFSRRNI-LLR  709 (711)
Q Consensus       674 ~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~-lla  709 (711)
                             ........+..|...|.+|+|++++. +||
T Consensus       291 -------~~~~~~~~~~~h~~~V~~v~~~p~~~~~la  320 (345)
T 3fm0_A          291 -------TFSLTAHLHQAHSQDVNCVAWNPKEPGLLA  320 (345)
T ss_dssp             -------CEEEEEEETTSSSSCEEEEEECSSSTTEEE
T ss_pred             -------eEEEEeeecccccCcEeEeEEeCCCceEEE
Confidence                   01122234567889999999999873 676

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.7e-40  Score=359.00  Aligned_cols=275  Identities=20%  Similarity=0.243  Sum_probs=234.3

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeC------CCeEEEEeCCCCc---------------eeeeccCccccccccccCCcEE
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFS------ESYIKLWSLVPQK---------------LKAMKSSDQLQDIEMECDDILV  442 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~------dg~I~vWdl~~~~---------------~~~~~~~~~~~~l~~~~~d~~i  442 (711)
                      ..|...|++++|||||++||+|+.      |+.|++|+..+..               +..+.++++. .+++++.++.|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-GILVASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-EEEEEETTSCE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-CEEEEECCCEE
Confidence            468999999999999999999998      7789999875432               2233444443 35567789999


Q ss_pred             EEEecCCCeeE----EEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCC-EE
Q psy14440        443 RIMDERNAETT----RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGY-YF  517 (711)
Q Consensus       443 ~i~d~~~~~~~----~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~-~l  517 (711)
                      ++||..+++..    ....+|.+.|++++|+|++++|++|+.||+|++||+.+++++..+.+|...|++++|++++. ++
T Consensus       118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~  197 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF  197 (357)
T ss_dssp             EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred             EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence            99998776643    34558999999999999999999999999999999999999999999999999999999874 89


Q ss_pred             EEEECCCeEEEEECCCCceeEEee--cCCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEE
Q psy14440        518 ASAGHDRMARLWATDSYHPLRLFV--GHYSDVDCVQFHPN-SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSF  594 (711)
Q Consensus       518 ~sgs~Dg~i~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~-~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~  594 (711)
                      ++++.||+|++||+++++.+..+.  .|...+.+++|+|+ +.+|++|+.|+.|++||++++++++.+.+|...|++++|
T Consensus       198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~  277 (357)
T 4g56_B          198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY  277 (357)
T ss_dssp             EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEE
T ss_pred             eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEE
Confidence            999999999999999988776554  46778999999996 578999999999999999999999999999999999999


Q ss_pred             ecCC-CEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCC
Q psy14440        595 SVCG-RFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSR-DGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       595 spdg-~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fsp-dg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      +|++ ++|++|+.||+|+|||+.+++++..+ +|.+.|++++|+| ++++|++||.||+|++||+...
T Consensus       278 sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          278 SYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             CSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             cCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            9987 58999999999999999999887655 7999999999998 8999999999999999999764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3e-39  Score=340.75  Aligned_cols=281  Identities=29%  Similarity=0.520  Sum_probs=255.8

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-----------eeeccCccccccccccCCcEEEEEe
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKL-----------KAMKSSDQLQDIEMECDDILVRIMD  446 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~-----------~~~~~~~~~~~l~~~~~d~~i~i~d  446 (711)
                      ...+++.+|.+.|++++|++++++||+|+.||.|++|++.+.+.           ..+.++.+...++.++.++.+++||
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD   93 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence            34567899999999999999999999999999999999866543           3345566777888999999999999


Q ss_pred             cCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeE
Q psy14440        447 ERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMA  526 (711)
Q Consensus       447 ~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i  526 (711)
                      ..+++....+.+|.+.|.+++|++++++|++|+.||+|++||+.+++++..+..|...|.+++|++++.+|++|+.||.|
T Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
T 4ery_A           94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  173 (312)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCceeEEee-cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEE--EE-ecCCCEEE
Q psy14440        527 RLWATDSYHPLRLFV-GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SF-SVCGRFLA  602 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~l--a~-spdg~~La  602 (711)
                      ++||+++++.+..+. .+...+.+++|+|++++|++++.||.|++||+++++++..+.+|...+.++  .+ .+++.+|+
T Consensus       174 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
T 4ery_A          174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV  253 (312)
T ss_dssp             EEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEE
T ss_pred             EEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEE
Confidence            999999998877664 466789999999999999999999999999999999999999887654332  33 36789999


Q ss_pred             EEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEe--CCCcEEEEeCC
Q psy14440        603 SAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSG--QDCSVKLWDFA  658 (711)
Q Consensus       603 sgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs--~Dg~V~iWdl~  658 (711)
                      +|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++  .||+|++|+..
T Consensus       254 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          254 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            999999999999999999999999999999999999999999997  69999999964

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.4e-39  Score=342.08  Aligned_cols=278  Identities=23%  Similarity=0.385  Sum_probs=250.0

Q ss_pred             EEEEEecCCCceEEEEECCCC-CEEEEEeCCCeEEEEeCCCC----------------ceeeeccCccccccccccCCcE
Q psy14440        379 ACYTLLNARQQVTCAEISEDV-SILAVGFSESYIKLWSLVPQ----------------KLKAMKSSDQLQDIEMECDDIL  441 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg-~~LatG~~dg~I~vWdl~~~----------------~~~~~~~~~~~~~l~~~~~d~~  441 (711)
                      ...++.+|.+.|++++|++++ ++|++|+.|++|++|++.+.                .+..+..+.+...++.++.|+.
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~   88 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT   88 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence            455789999999999999965 89999999999999997532                1233455667778889999999


Q ss_pred             EEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCC------CC
Q psy14440        442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH------GY  515 (711)
Q Consensus       442 i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~------g~  515 (711)
                      |++||..+++....+.+|.+.|.+++|++++.+|++|+.|++|++||+. +.++..+.+|...|.++.|+|.      +.
T Consensus        89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  167 (319)
T 3frx_A           89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSV  167 (319)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CC
T ss_pred             EEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence            9999999999999999999999999999999999999999999999996 5678888999999999999984      45


Q ss_pred             EEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEe
Q psy14440        516 YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFS  595 (711)
Q Consensus       516 ~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~s  595 (711)
                      ++++++.|++|++||+++.+....+.+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+.. ...|.+++|+
T Consensus       168 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~s  246 (319)
T 3frx_A          168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFS  246 (319)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEEC
T ss_pred             EEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEc
Confidence            899999999999999999999999999999999999999999999999999999999999999998885 4689999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCeEEEEeeC--------CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        596 VCGRFLASAGGDGNVHMWDLSNGHLLTLLTG--------HTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       596 pdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~--------h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      |+|.+|++++.+ .|++|++..+..+..+..        |...+.+++|+|||++|++|+.||+|+|||+.+
T Consensus       247 p~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          247 PNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             SSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             CCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            999999988765 599999998888777653        456799999999999999999999999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.3e-39  Score=377.50  Aligned_cols=305  Identities=21%  Similarity=0.304  Sum_probs=259.5

Q ss_pred             EEecCCCceEEEEECCCCC-EEEEEeCCCeEEEEeCCCCc-----------eeeeccCccccccccccCCcEEEEEecCC
Q psy14440        382 TLLNARQQVTCAEISEDVS-ILAVGFSESYIKLWSLVPQK-----------LKAMKSSDQLQDIEMECDDILVRIMDERN  449 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~-~LatG~~dg~I~vWdl~~~~-----------~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  449 (711)
                      ++.+|.+.|++++|+|++. .||+|+.|++|++|+..+.+           +..+.++++...++.++.|+.|++||..+
T Consensus       142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~  221 (611)
T 1nr0_A          142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  221 (611)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC
Confidence            5678999999999999997 69999999999999986543           34566677788899999999999999999


Q ss_pred             CeeEEEee-------cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE--------------------------
Q psy14440        450 AETTRTLV-------GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV--------------------------  496 (711)
Q Consensus       450 ~~~~~~l~-------~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~--------------------------  496 (711)
                      ++....+.       +|.+.|++++|+|++++|++|+.|++|++||+.+++++.                          
T Consensus       222 g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s  301 (611)
T 1nr0_A          222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS  301 (611)
T ss_dssp             CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred             CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEe
Confidence            98888884       899999999999999999999999999999998876554                          


Q ss_pred             -----------------EEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEe-e-----------------
Q psy14440        497 -----------------VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF-V-----------------  541 (711)
Q Consensus       497 -----------------~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~-~-----------------  541 (711)
                                       .+.+|...|++++|+|+|++|++++.|++|++||+.++...+.+ .                 
T Consensus       302 ~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l  381 (611)
T 1nr0_A          302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL  381 (611)
T ss_dssp             TTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred             CCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence                             34578999999999999999999999999999998876443221 0                 


Q ss_pred             ----------------------------------------------------------------cCCCCeeEEEEcCCCC
Q psy14440        542 ----------------------------------------------------------------GHYSDVDCVQFHPNSN  557 (711)
Q Consensus       542 ----------------------------------------------------------------~h~~~V~~v~~sp~~~  557 (711)
                                                                                      .|...+.+++|+|+|+
T Consensus       382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~  461 (611)
T 1nr0_A          382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ  461 (611)
T ss_dssp             EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred             EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence                                                                            1234577899999999


Q ss_pred             EEEEEEcCCcEEEEECCCCcE--EEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeEEEE--eeCCCCCEE
Q psy14440        558 YVATGSSDRTIRLWDCVTGSH--VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN-GHLLTL--LTGHTDVVR  632 (711)
Q Consensus       558 ~latgs~Dg~I~iwD~~~~~~--v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s-g~~i~~--l~~h~~~V~  632 (711)
                      +||+|+.|++|++||+.++..  +.. .+|...|++++|+|||++|++++.|++|++||+.+ ++.+..  +.+|.+.|+
T Consensus       462 ~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~  540 (611)
T 1nr0_A          462 FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA  540 (611)
T ss_dssp             EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEE
T ss_pred             EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeeccccee
Confidence            999999999999999987653  334 67999999999999999999999999999999987 666543  345999999


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccC-CcceEEEEEccCCeeee
Q psy14440        633 ALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTK-ASPLLHLIFSRRNILLR  709 (711)
Q Consensus       633 sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~-~~pV~~v~Fs~~n~lla  709 (711)
                      +++|+|||++|++|+.|++|+|||+.....                     ..+..+..| ...|.+|+|++++. |+
T Consensus       541 ~v~fspdg~~lasgs~D~~v~lW~~~~~~~---------------------~~~~~~~~h~~~~v~~v~fs~d~~-l~  596 (611)
T 1nr0_A          541 CVSWSPDNVRLATGSLDNSVIVWNMNKPSD---------------------HPIIIKGAHAMSSVNSVIWLNETT-IV  596 (611)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTCTTS---------------------CCEEETTSSTTSCEEEEEEEETTE-EE
T ss_pred             EEEECCCCCEEEEEECCCcEEEEECCCccc---------------------ccchhhccCcccCeeEEEEcCCCE-EE
Confidence            999999999999999999999999975321                     112345667 78999999999998 54

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.1e-39  Score=366.85  Aligned_cols=303  Identities=33%  Similarity=0.524  Sum_probs=274.1

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce----------eeeccCccccccccccCCcEEEEEec
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKL----------KAMKSSDQLQDIEMECDDILVRIMDE  447 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~----------~~~~~~~~~~~l~~~~~d~~i~i~d~  447 (711)
                      -++.++.+|...|++++|++|+++|++|+.|+.|++|+..+..+          ..+..+++...++.++.++.+++||.
T Consensus       253 ~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~  332 (577)
T 2ymu_A          253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR  332 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            35567889999999999999999999999999999999865433          33445566777888899999999996


Q ss_pred             CCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEE
Q psy14440        448 RNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMAR  527 (711)
Q Consensus       448 ~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~  527 (711)
                      . ......+.+|...|.+++|+|++++|++++.||+|++||. +++.+..+.+|...|.+++|+|+|++|++++.|+.|+
T Consensus       333 ~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~  410 (577)
T 2ymu_A          333 N-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK  410 (577)
T ss_dssp             T-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             C-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEE
Confidence            5 4556788899999999999999999999999999999995 5788889999999999999999999999999999999


Q ss_pred             EEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC
Q psy14440        528 LWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       528 lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D  607 (711)
                      +||. +++.+..+.+|...|.+++|+|++++|++++.|++|++||. +++.+..+.+|...|++++|+|+|++|++++.|
T Consensus       411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d  488 (577)
T 2ymu_A          411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD  488 (577)
T ss_dssp             EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETT
T ss_pred             EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            9995 56788889999999999999999999999999999999996 678889999999999999999999999999999


Q ss_pred             CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceee
Q psy14440        608 GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVR  687 (711)
Q Consensus       608 g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  687 (711)
                      +.|++||. +++.+..+.+|.+.|++++|+|+|++|++|+.||+|+|||+.                        ..++.
T Consensus       489 ~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~------------------------~~~~~  543 (577)
T 2ymu_A          489 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------------------------GQLLQ  543 (577)
T ss_dssp             SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT------------------------SCEEE
T ss_pred             CEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC------------------------CCEEE
Confidence            99999995 789999999999999999999999999999999999999953                        12456


Q ss_pred             ecccCCcceEEEEEccCCeeee
Q psy14440        688 SYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       688 ~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      ++..|..+|.+|+|++|+.+|+
T Consensus       544 ~~~~h~~~v~~~~fs~dg~~l~  565 (577)
T 2ymu_A          544 TLTGHSSSVWGVAFSPDGQTIA  565 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSCEE
T ss_pred             EEcCCCCCEEEEEEcCCCCEEE
Confidence            7888999999999999999887

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=100.00  E-value=2.8e-42  Score=324.18  Aligned_cols=152  Identities=49%  Similarity=0.855  Sum_probs=146.5

Q ss_pred             CCCCccccccccccccCCChhHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcCCC
Q psy14440        123 DPNDSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDH  202 (711)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~yl~lv~~~~~~~a~~f~~~~~~~~  202 (711)
                      +.+|+++++.+.++.+++||+.|+++|.+||+||++|||+||+||++||||||||+||+||++|+.++|++||+||+++|
T Consensus         5 ~~~e~~~~~~~~~~~~~~dp~~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~   84 (156)
T 2nxp_A            5 VEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQ   84 (156)
T ss_dssp             ---CCCHHHHHGGGSSCCCTTSHHHHHHHHHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGS
T ss_pred             ccCCchHHHHHHHhhccCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHh
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHhcCCCcccccccHHHHHhhcCccEEEeCHHHHHHHHHHHhhcChhhHHHHhhcceEEEEcc
Q psy14440        203 EPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYE  274 (711)
Q Consensus       203 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~v~~s~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~  274 (711)
                      +.+|+++|++|++|++++|+++|+++++||+|||+|+||++++++|++||+++++++|++|||+||+|++++
T Consensus        85 ~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~~fL~~~~~~~ll~Iin~~i~i~v~~  156 (156)
T 2nxp_A           85 ECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFD  156 (156)
T ss_dssp             CGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHHHHTCEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHHHHHHHcCChHHHHHHHHheeeeeeC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999863

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2e-39  Score=357.23  Aligned_cols=267  Identities=27%  Similarity=0.485  Sum_probs=251.2

Q ss_pred             ceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe
Q psy14440        420 KLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK  499 (711)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~  499 (711)
                      .+..+.++++...++.++.|+.|++||..+++....+.+|.+.|++++|++++++|++|+.||+|++||+.+++++..+.
T Consensus       110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~  189 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH  189 (410)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc
Confidence            44555666777788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE
Q psy14440        500 GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV  579 (711)
Q Consensus       500 ~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v  579 (711)
                      +|...|++++|+|++.+|++|+.|++|++||++++.++..+.+|...|.+++|++++.+|++|+.|++|++||+.++++.
T Consensus       190 ~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~  269 (410)
T 1vyh_C          190 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK  269 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCeEEEEEecC--------------------CCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCC
Q psy14440        580 RLLTGHKAPVYALSFSVC--------------------GRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRD  639 (711)
Q Consensus       580 ~~~~~h~~~I~~la~spd--------------------g~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspd  639 (711)
                      ..+.+|...|.+++|+|+                    |.+|++|+.||.|++||+++++++..+.+|.+.|++++|+++
T Consensus       270 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~  349 (410)
T 1vyh_C          270 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG  349 (410)
T ss_dssp             EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred             eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCC
Confidence            999999999999999996                    679999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        640 GNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       640 g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      |++|++|+.||+|++||+.+.                       .++..+..|...|.+|+|++++.+||
T Consensus       350 g~~l~s~s~D~~i~vwd~~~~-----------------------~~~~~~~~h~~~v~~l~~~~~~~~l~  396 (410)
T 1vyh_C          350 GKFILSCADDKTLRVWDYKNK-----------------------RCMKTLNAHEHFVTSLDFHKTAPYVV  396 (410)
T ss_dssp             SSCEEEEETTTEEEEECCTTS-----------------------CCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred             CCEEEEEeCCCeEEEEECCCC-----------------------ceEEEEcCCCCcEEEEEEcCCCCEEE
Confidence            999999999999999998642                       23456778899999999999998887

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.8e-38  Score=340.53  Aligned_cols=294  Identities=22%  Similarity=0.325  Sum_probs=239.8

Q ss_pred             eEEEEEecCCCceEEEEE-----CC-CCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCe
Q psy14440        378 IACYTLLNARQQVTCAEI-----SE-DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAE  451 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~f-----s~-dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  451 (711)
                      .+..++.+|.+.|++++|     ++ |+++||+|+.|++|+||++.......                        ..+.
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~------------------------~~~~   67 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG------------------------YFGI   67 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS------------------------BSEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc------------------------cccc
Confidence            355678999999999999     76 99999999999999999986432110                        1234


Q ss_pred             eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy14440        452 TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWAT  531 (711)
Q Consensus       452 ~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~  531 (711)
                      ....+.+|.+.|++++|++++.+|++|+.|++|++||+.+++.+..+.+|...|++++|+|++++|++|+.|++|++||+
T Consensus        68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI  147 (343)
T ss_dssp             EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred             ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEee---cCCCCeeEEEEcCCC----------CEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCC
Q psy14440        532 DSYHPLRLFV---GHYSDVDCVQFHPNS----------NYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCG  598 (711)
Q Consensus       532 ~~~~~~~~~~---~h~~~V~~v~~sp~~----------~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg  598 (711)
                      ... ......   +|...|.+++|+|++          .+|++|+.||+|++|| .++.....+.+|...|++++|+|+|
T Consensus       148 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g  225 (343)
T 2xzm_R          148 LGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNG  225 (343)
T ss_dssp             SSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             cCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCC
Confidence            843 333333   688899999999986          7999999999999999 5667788899999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCC-CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcccccccccccc
Q psy14440        599 RFLASAGGDGNVHMWDLSN-GHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADI  677 (711)
Q Consensus       599 ~~Lasgs~Dg~I~iwDl~s-g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~  677 (711)
                      ++|++|+.||.|++||+.+ +.....+. +...|.+++|+|++.+|++| .|+.|++||+.+....... ..  ..    
T Consensus       226 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~-~~--~~----  296 (343)
T 2xzm_R          226 KYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVC-TI--EA----  296 (343)
T ss_dssp             SEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEE-EC--CC----
T ss_pred             CEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceE-Ee--ec----
Confidence            9999999999999999954 43444443 45679999999999888755 5889999999764321100 00  00    


Q ss_pred             ccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        678 KNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       678 ~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                         ...........+...|.+|+|++++.+||
T Consensus       297 ---~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  325 (343)
T 2xzm_R          297 ---EPITKAEGQKGKNPQCTSLAWNALGKKLF  325 (343)
T ss_dssp             ---CSGGGBTTBCCSCCCEEEEEECSSSCCEE
T ss_pred             ---CcchhhhhhcCCCCceEEEEECCCCCeEE
Confidence               00001112345778899999999999888

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-39  Score=342.45  Aligned_cols=278  Identities=23%  Similarity=0.414  Sum_probs=233.1

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc---------------eeeeccCccccccccccCCcEEE
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK---------------LKAMKSSDQLQDIEMECDDILVR  443 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~---------------~~~~~~~~~~~~l~~~~~d~~i~  443 (711)
                      +..++.+|.+.|++++|+++  +||+|+.|+.|++|++....               +..+.++++...++.++.|+.|+
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~   83 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS   83 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            56778999999999999988  99999999999999987532               22234455667788899999999


Q ss_pred             EEecC-------CCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeEEEEEecCCCCEEEEEEcC
Q psy14440        444 IMDER-------NAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL----WRCLVVYKGHGHPVWDIKFSP  512 (711)
Q Consensus       444 i~d~~-------~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t----~~~~~~~~~h~~~V~~v~~sp  512 (711)
                      +|+..       .......+.+|.+.|++++|+|++++|++|+.|++|++||+..    .+++..+.+|...|.+++|+|
T Consensus        84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p  163 (330)
T 2hes_X           84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP  163 (330)
T ss_dssp             EEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred             EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence            99974       2456778899999999999999999999999999999999942    367888999999999999999


Q ss_pred             CCCEEEEEECCCeEEEEECCCC--ceeEEeecCCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCC--------cEEE
Q psy14440        513 HGYYFASAGHDRMARLWATDSY--HPLRLFVGHYSDVDCVQFHPN--SNYVATGSSDRTIRLWDCVTG--------SHVR  580 (711)
Q Consensus       513 ~g~~l~sgs~Dg~i~lwd~~~~--~~~~~~~~h~~~V~~v~~sp~--~~~latgs~Dg~I~iwD~~~~--------~~v~  580 (711)
                      ++.+|++|+.|++|++||..++  +++..+.+|...|.+++|+|+  +.+|++|+.|++|++||+.++        .+..
T Consensus       164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~  243 (330)
T 2hes_X          164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA  243 (330)
T ss_dssp             SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEee
Confidence            9999999999999999998766  678889999999999999998  779999999999999998765        4455


Q ss_pred             EeeC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe--EEEE-eeCCCC-CEEEEEEeC--CCCEEEEEeCCCcEE
Q psy14440        581 LLTG-HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGH--LLTL-LTGHTD-VVRALCFSR--DGNILASSGQDCSVK  653 (711)
Q Consensus       581 ~~~~-h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~--~i~~-l~~h~~-~V~sl~fsp--dg~~Lasgs~Dg~V~  653 (711)
                      .+.+ |...|++++|++++ +|++|+.||.|+|||..+++  .+.. ..+|.. .|++++|++  ++++|++|+.||+|+
T Consensus       244 ~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~  322 (330)
T 2hes_X          244 ILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVN  322 (330)
T ss_dssp             ECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEE
T ss_pred             ecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEE
Confidence            5655 99999999999655 89999999999999998874  3333 367887 899999999  789999999999999


Q ss_pred             EEeCCC
Q psy14440        654 LWDFAK  659 (711)
Q Consensus       654 iWdl~~  659 (711)
                      |||+..
T Consensus       323 ~W~~~~  328 (330)
T 2hes_X          323 FWSLEK  328 (330)
T ss_dssp             EEEC--
T ss_pred             EEEecc
Confidence            999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-39  Score=349.09  Aligned_cols=324  Identities=18%  Similarity=0.262  Sum_probs=276.4

Q ss_pred             EEEEecCCCceEEEEECCCCC-EEEEEeCCCeEEEEeC----CCCc---------------------------eeeeccC
Q psy14440        380 CYTLLNARQQVTCAEISEDVS-ILAVGFSESYIKLWSL----VPQK---------------------------LKAMKSS  427 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~-~LatG~~dg~I~vWdl----~~~~---------------------------~~~~~~~  427 (711)
                      ....+.|.+.|+|++|+++|+ +||+|+.||.|++|++    .+.+                           +..+.++
T Consensus        38 ~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  117 (425)
T 1r5m_A           38 ILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS  117 (425)
T ss_dssp             ECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred             heeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc
Confidence            345577789999999999999 9999999999999999    5544                           3334455


Q ss_pred             ccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC---
Q psy14440        428 DQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP---  504 (711)
Q Consensus       428 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~---  504 (711)
                      .+...+++++.++.|++|+ .++.....+.+|.+.|++++|++++++|++++.||.|++||+.+++.+..+..+...   
T Consensus       118 ~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  196 (425)
T 1r5m_A          118 HDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS  196 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred             CCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence            6677788889999999999 778888999999999999999999999999999999999999999999999888777   


Q ss_pred             ------------EEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEE
Q psy14440        505 ------------VWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWD  572 (711)
Q Consensus       505 ------------V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD  572 (711)
                                  +.+++|++++ .+++++.||.|++||+.+++.+..+.+|...|.+++|++++++|++++.||.|++||
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  275 (425)
T 1r5m_A          197 INAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH  275 (425)
T ss_dssp             ---------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred             eeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence                        9999999875 689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcE
Q psy14440        573 CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSV  652 (711)
Q Consensus       573 ~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V  652 (711)
                      +.+++.+..+.+|...|.+++|++++ +|++++.||.|++||+.+++.+..+..|...|.+++|++++++|++|+.||.|
T Consensus       276 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  354 (425)
T 1r5m_A          276 GGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQV  354 (425)
T ss_dssp             SSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeE
Confidence            99999999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCccCccccccccccccccccccceeeecccCCc--ceEEEEEccCCeeee
Q psy14440        653 KLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKAS--PLLHLIFSRRNILLR  709 (711)
Q Consensus       653 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~--pV~~v~Fs~~n~lla  709 (711)
                      ++||+...........   ..............+..+..+..  +|.+++|++++.+|+
T Consensus       355 ~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  410 (425)
T 1r5m_A          355 NVYDLKKLNSKSRSLY---GNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKIS  410 (425)
T ss_dssp             EEEECHHHHC-----------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEE
T ss_pred             EEEECCCCccceeeee---cccccccCcccchhhhhhcCcccCCceEEEEccCCCceEE
Confidence            9999975432111100   00000111122336778888876  999999999998886

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.4e-38  Score=335.97  Aligned_cols=257  Identities=24%  Similarity=0.394  Sum_probs=241.9

Q ss_pred             ccccccccCCcEEEEEecCCCee--EEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEE
Q psy14440        430 LQDIEMECDDILVRIMDERNAET--TRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWD  507 (711)
Q Consensus       430 ~~~l~~~~~d~~i~i~d~~~~~~--~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~  507 (711)
                      ...++.++.|+.|++|+......  ...+.+|...|.+++|++++.++++++.|++|++||+.+++.+..+..|...+++
T Consensus        48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~  127 (321)
T 3ow8_A           48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT  127 (321)
T ss_dssp             -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCC
T ss_pred             CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEE
Confidence            45688899999999999876653  4578899999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCC
Q psy14440        508 IKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKA  587 (711)
Q Consensus       508 v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~  587 (711)
                      ++|+|++++|++|+.||.|++|++++++....+..|...|.+++|+|++++|++|+.||+|++||+++++.+..+.+|..
T Consensus       128 ~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~  207 (321)
T 3ow8_A          128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM  207 (321)
T ss_dssp             EEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcc
Q psy14440        588 PVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTE  667 (711)
Q Consensus       588 ~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~  667 (711)
                      .|++++|+|+|++|++|+.||.|+|||+++++.+..+.+|.+.|.+++|+|++++|++|+.||+|+|||+.+        
T Consensus       208 ~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~--------  279 (321)
T 3ow8_A          208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT--------  279 (321)
T ss_dssp             CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred             ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC--------
Confidence            999999999999999999999999999999999999999999999999999999999999999999999864        


Q ss_pred             ccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        668 EVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                                     ..++.++..|...|.+|+|++++.+|+
T Consensus       280 ---------------~~~~~~~~~h~~~v~~v~~s~~g~~l~  306 (321)
T 3ow8_A          280 ---------------RTCVHTFFDHQDQVWGVKYNGNGSKIV  306 (321)
T ss_dssp             ---------------TEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ---------------CEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence                           345667888999999999999998877

>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1

Probab=100.00  E-value=1.4e-41  Score=314.33  Aligned_cols=137  Identities=29%  Similarity=0.549  Sum_probs=129.9

Q ss_pred             cCCChhHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcCCCcchHHHHHHHHhcCC
Q psy14440        138 SEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVT  217 (711)
Q Consensus       138 ~~~~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~yl~lv~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~  217 (711)
                      .++||+.|+++|.+||+||++|||+||+||++|||||||||||+||++| .++|++||++|+++|+.+|.++|++|++|+
T Consensus         3 ~~~dp~~y~~~y~~Lr~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~   81 (148)
T 2j49_A            3 HMNAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVN   81 (148)
T ss_dssp             ----CTTHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCC
T ss_pred             cccCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCC
Confidence            3668999999999999999999999999999999999999999999999 999999999999999999999999999999


Q ss_pred             CcccccccHHHHHhhcCccEEEeCHHHHHHHHHHHhhcChh---hHHHHhhcceEEEEccC
Q psy14440        218 KRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHT---VLLNIVQEHLYFDMYEG  275 (711)
Q Consensus       218 ~~~~~~~~~~~~~~~~~k~~v~~s~~~~~~l~~~l~~~~~~---~~~~i~~~~~~~~~~~~  275 (711)
                      +++||++|+++++||+|||+|+||++++++|++||+++++.   +|++|||+||+|++++|
T Consensus        82 ~p~hl~~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~~~~~gg~~ll~Iin~~i~i~v~~~  142 (148)
T 2j49_A           82 SIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIVES  142 (148)
T ss_dssp             SHHHHHHCHHHHHHHSSCEEEEECHHHHHHHHHHHHHTGGGTHHHHHHHHHHHEEEEEC--
T ss_pred             CHHHHhhCHHHHHHHhCCeEEEECHHHHHHHHHHHHHcCcccHHHHHHHHHHheeEeeeCC
Confidence            99999999999999999999999999999999999999888   99999999999999876

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.1e-37  Score=356.37  Aligned_cols=303  Identities=33%  Similarity=0.551  Sum_probs=273.0

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce----------eeeccCccccccccccCCcEEEEEec
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKL----------KAMKSSDQLQDIEMECDDILVRIMDE  447 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~----------~~~~~~~~~~~l~~~~~d~~i~i~d~  447 (711)
                      ..+.++.+|...|.+++|++|+++|++|+.|+.|++|+..+..+          ..+.+.++...++.++.++.+++|+.
T Consensus       212 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~  291 (577)
T 2ymu_A          212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR  291 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC
Confidence            35667889999999999999999999999999999999865443          23445566677888889999999995


Q ss_pred             CCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEE
Q psy14440        448 RNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMAR  527 (711)
Q Consensus       448 ~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~  527 (711)
                       +++....+.+|.+.|++++|+|++++|++++.|++|++||+.. ..+..+.+|...|++++|+|+|+++++|+.||.++
T Consensus       292 -~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~  369 (577)
T 2ymu_A          292 -NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK  369 (577)
T ss_dssp             -TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             -CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence             5677888999999999999999999999999999999999864 55677889999999999999999999999999999


Q ss_pred             EEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC
Q psy14440        528 LWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       528 lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D  607 (711)
                      +|+. +++.+..+.+|...|.+++|+|++++|++++.|++|++||. +++.+..+.+|...|++++|+|++++|++++.|
T Consensus       370 ~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d  447 (577)
T 2ymu_A          370 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD  447 (577)
T ss_dssp             EEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence            9995 56788889999999999999999999999999999999995 678889999999999999999999999999999


Q ss_pred             CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceee
Q psy14440        608 GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVR  687 (711)
Q Consensus       608 g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  687 (711)
                      +.|++||. +++.+..+.+|...|++++|+|+|++|++++.|++|++||..                        ..++.
T Consensus       448 ~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~------------------------~~~~~  502 (577)
T 2ymu_A          448 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------------------------GQLLQ  502 (577)
T ss_dssp             SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT------------------------SCEEE
T ss_pred             CEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC------------------------CCEEE
Confidence            99999996 678889999999999999999999999999999999999953                        12455


Q ss_pred             ecccCCcceEEEEEccCCeeee
Q psy14440        688 SYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       688 ~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      .+..|..+|.+|+|++++.+||
T Consensus       503 ~~~~h~~~v~~l~~s~dg~~l~  524 (577)
T 2ymu_A          503 TLTGHSSSVRGVAFSPDGQTIA  524 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSCEE
T ss_pred             EEeCCCCCEEEEEEcCCCCEEE
Confidence            6788999999999999999988

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.4e-37  Score=330.37  Aligned_cols=269  Identities=19%  Similarity=0.286  Sum_probs=245.6

Q ss_pred             CCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----
Q psy14440        417 VPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW----  492 (711)
Q Consensus       417 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~----  492 (711)
                      ....+..+.++.+...++.++.|+.|++||..++.....+..|...|.+++|+|++++|++|+.|+.|++|++.+.    
T Consensus        54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~  133 (340)
T 1got_B           54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV  133 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc
Confidence            3445566667777888999999999999999999999999999999999999999999999999999999999765    


Q ss_pred             eEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEE
Q psy14440        493 RCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWD  572 (711)
Q Consensus       493 ~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD  572 (711)
                      .....+.+|...|.++.|++++ .+++++.|++|++||+++++.+..+.+|...|.+++|+|++++|++|+.||+|++||
T Consensus       134 ~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd  212 (340)
T 1got_B          134 RVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             EEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            4667788999999999999877 589999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC--CCCCEEEEEEeCCCCEEEEEeCCC
Q psy14440        573 CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG--HTDVVRALCFSRDGNILASSGQDC  650 (711)
Q Consensus       573 ~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~--h~~~V~sl~fspdg~~Lasgs~Dg  650 (711)
                      ++++.++..+.+|...|++++|+|+|++|++|+.||+|++||+++++.+..+..  +...|.+++|+++|++|++|+.||
T Consensus       213 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~  292 (340)
T 1got_B          213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF  292 (340)
T ss_dssp             TTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCC
Confidence            999999999999999999999999999999999999999999999998877753  335799999999999999999999


Q ss_pred             cEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        651 SVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       651 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      .|++||+.+.                       ..+..+.+|..+|.+|+|++++.+||
T Consensus       293 ~i~vwd~~~~-----------------------~~~~~~~~h~~~v~~~~~s~dg~~l~  328 (340)
T 1got_B          293 NCNVWDALKA-----------------------DRAGVLAGHDNRVSCLGVTDDGMAVA  328 (340)
T ss_dssp             EEEEEETTTC-----------------------CEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred             eEEEEEcccC-----------------------cEeeEeecCCCcEEEEEEcCCCCEEE
Confidence            9999998642                       23456788999999999999999888

>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1

Probab=100.00  E-value=1.4e-40  Score=305.19  Aligned_cols=134  Identities=31%  Similarity=0.588  Sum_probs=127.6

Q ss_pred             ChhHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcCCCcchHHHHHHHHhcCCCcc
Q psy14440        141 DPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRD  220 (711)
Q Consensus       141 ~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~yl~lv~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~  220 (711)
                      -|+.|+++|.+||+||++|||+||+||++|||||||||||+||++|+.++|++||+||+++|+.+ .++|++|++|++++
T Consensus         4 ~~~~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e   82 (138)
T 2j4b_A            4 MKDQMETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQ   82 (138)
T ss_dssp             ---CHHHHHHHHHHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHH
T ss_pred             hHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             cccccHHHHHhhcCccEEEeCHHHHHHHHHHHhhcChhhHHHHhhcceEEEEccC
Q psy14440        221 QIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYEG  275 (711)
Q Consensus       221 ~~~~~~~~~~~~~~k~~v~~s~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~  275 (711)
                      |+++|+++++||+|||+|+||++++++|++||+++++++|++|||+||+|++++|
T Consensus        83 ~l~~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~~~~~~ll~Iin~~i~i~v~~g  137 (138)
T 2j4b_A           83 HIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHLDIKVYVG  137 (138)
T ss_dssp             HHHHCHHHHHHHHSCEEEEEEHHHHHHHHHHHHHTTCHHHHHHHHHHEEEEEECC
T ss_pred             HHhhCHHHHHHHhCCeEEEECHHHHHHHHHHHHHCCChHHHHHHHHheeeEeeCC
Confidence            9999999999999999999999999999999999999999999999999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.4e-38  Score=329.47  Aligned_cols=250  Identities=25%  Similarity=0.365  Sum_probs=219.2

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      ..+.+|.+.|++++|+++|++||+|+.|++|+||++.+.                             +.+....+.+|.
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~-----------------------------~~~~~~~l~gH~   53 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE-----------------------------THKLIDTLTGHE   53 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS-----------------------------CBCCCEEECCCS
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC-----------------------------CcEEEEEEcccc
Confidence            356789999999999999999999999999999998532                             223456788999


Q ss_pred             CCEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCEEEEEEcCC--CCEEEEEECCCeEEEEECCCC
Q psy14440        461 GPVRKLSFSPD--RSLLLSCSQDNTIRLWSLLLWR--CLVVYKGHGHPVWDIKFSPH--GYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       461 ~~V~~l~fspd--g~~L~s~s~Dg~V~iwdl~t~~--~~~~~~~h~~~V~~v~~sp~--g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      +.|++++|+++  +++|++|+.||+|++||+.+++  .+..+.+|...|.+++|+|+  |.+|++|+.|++|++||+++.
T Consensus        54 ~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~  133 (297)
T 2pm7_B           54 GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN  133 (297)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred             CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence            99999999864  8999999999999999998763  56678889999999999997  889999999999999999876


Q ss_pred             c--eeEEeecCCCCeeEEEEcCC-------------CCEEEEEEcCCcEEEEECCCCc----EEEEeeCCCCCeEEEEEe
Q psy14440        535 H--PLRLFVGHYSDVDCVQFHPN-------------SNYVATGSSDRTIRLWDCVTGS----HVRLLTGHKAPVYALSFS  595 (711)
Q Consensus       535 ~--~~~~~~~h~~~V~~v~~sp~-------------~~~latgs~Dg~I~iwD~~~~~----~v~~~~~h~~~I~~la~s  595 (711)
                      .  ....+.+|...|.+++|+|+             +++|++|+.|++|++||+++++    ....+.+|...|.+++|+
T Consensus       134 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~s  213 (297)
T 2pm7_B          134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS  213 (297)
T ss_dssp             SCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred             CceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEEC
Confidence            3  24567899999999999996             5799999999999999998876    667888999999999999


Q ss_pred             cCC---CEEEEEeCCCcEEEEECCCCe---EEEEe--eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        596 VCG---RFLASAGGDGNVHMWDLSNGH---LLTLL--TGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       596 pdg---~~Lasgs~Dg~I~iwDl~sg~---~i~~l--~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      |++   .+|++|+.||+|+|||+.++.   ....+  .+|.+.|++++|+++|++||+|+.||+|+||+...
T Consensus       214 p~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          214 PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             CCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            985   899999999999999997743   22333  46788999999999999999999999999999763

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=7.3e-39  Score=351.02  Aligned_cols=307  Identities=18%  Similarity=0.200  Sum_probs=260.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee----------eccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKA----------MKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~----------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      .+++++|+++|++|++|+.||.|++|++.+.+...          ...+.+...+++++.++.|++||..+++....+.+
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  137 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA  137 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence            35578999999999999999999999997654221          13455667788899999999999999999888899


Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeE
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLR  538 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~  538 (711)
                      |.+.|++++|++++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|++.+|++++.||+|++||+++++.+.
T Consensus       138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~  217 (420)
T 3vl1_A          138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH  217 (420)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             Eeec---CC---------------------CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee-CCCCCeEEEE
Q psy14440        539 LFVG---HY---------------------SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT-GHKAPVYALS  593 (711)
Q Consensus       539 ~~~~---h~---------------------~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~-~h~~~I~~la  593 (711)
                      .+..   |.                     ..+.+++|+|++++|++|+.||.|++||+++++.+..+. +|...|++++
T Consensus       218 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  297 (420)
T 3vl1_A          218 TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLT  297 (420)
T ss_dssp             EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEE
T ss_pred             EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEE
Confidence            8875   33                     444455567899999999999999999999998877765 5889999999


Q ss_pred             EecCCC-EEEEEeCCCcEEEEECCCCeE-EEEeeC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccc
Q psy14440        594 FSVCGR-FLASAGGDGNVHMWDLSNGHL-LTLLTG-HTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVN  670 (711)
Q Consensus       594 ~spdg~-~Lasgs~Dg~I~iwDl~sg~~-i~~l~~-h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~  670 (711)
                      |+|+++ +|++|+.||.|++||+++++. +..+.+ |...|+++.|. ++++|++|+.||+|++||+..........   
T Consensus       298 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~---  373 (420)
T 3vl1_A          298 VDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSSGFDTSIKLDIISDPESERPAI---  373 (420)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTEEEEEETTTEEEEEEEECCTTCCSCEE---
T ss_pred             EeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCCEEEEecCCccEEEEeccCCCCCccce---
Confidence            999999 999999999999999998754 677776 66788888654 78899999999999999998743221110   


Q ss_pred             cccccccccccccceeeecccCCcceEEEEEccCCe----eee-C
Q psy14440        671 LSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNI----LLR-G  710 (711)
Q Consensus       671 ~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~----lla-G  710 (711)
                                 .......+..+...|.+++|++++.    ++| |
T Consensus       374 -----------~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g  407 (420)
T 3vl1_A          374 -----------EFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVG  407 (420)
T ss_dssp             -----------CTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEE
T ss_pred             -----------eccCccEEccCCcceEEEEEccCCCCcceEEEEc
Confidence                       0111123567788999999999988    777 5

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-39  Score=349.46  Aligned_cols=323  Identities=17%  Similarity=0.309  Sum_probs=268.4

Q ss_pred             CceEEEEECCCCC-EEEEE----------eCCCeEEEEeCCCCc-------------eeeeccCccccccccccCCcEEE
Q psy14440        388 QQVTCAEISEDVS-ILAVG----------FSESYIKLWSLVPQK-------------LKAMKSSDQLQDIEMECDDILVR  443 (711)
Q Consensus       388 ~~V~~l~fs~dg~-~LatG----------~~dg~I~vWdl~~~~-------------~~~~~~~~~~~~l~~~~~d~~i~  443 (711)
                      ..|.|++|+|+|+ +||+|          +.|+.|+||++.+..             +..+.++.+...++.++.++.|+
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence            5789999999997 99999          889999999997643             23345566777888888999999


Q ss_pred             EEecCC----CeeEEEeecccCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe------EEEE---EecCCCCEEEEE
Q psy14440        444 IMDERN----AETTRTLVGHEGPVRKLSFSPD-RSLLLSCSQDNTIRLWSLLLWR------CLVV---YKGHGHPVWDIK  509 (711)
Q Consensus       444 i~d~~~----~~~~~~l~~h~~~V~~l~fspd-g~~L~s~s~Dg~V~iwdl~t~~------~~~~---~~~h~~~V~~v~  509 (711)
                      +|+..+    ......+.+|.+.|++++|+++ +++|++++.||+|++||+.+++      ....   +.+|...|.+++
T Consensus        93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  172 (416)
T 2pm9_A           93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA  172 (416)
T ss_dssp             EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred             EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence            999887    4578899999999999999998 8999999999999999998876      3322   367899999999


Q ss_pred             EcCC-CCEEEEEECCCeEEEEECCCCceeEEeecC------CCCeeEEEEcCCC-CEEEEEEcCC---cEEEEECCCC-c
Q psy14440        510 FSPH-GYYFASAGHDRMARLWATDSYHPLRLFVGH------YSDVDCVQFHPNS-NYVATGSSDR---TIRLWDCVTG-S  577 (711)
Q Consensus       510 ~sp~-g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h------~~~V~~v~~sp~~-~~latgs~Dg---~I~iwD~~~~-~  577 (711)
                      |+++ +.+|++++.||.|++||+++++.+..+..+      ...|.+++|+|++ .++++++.|+   .|++||++++ .
T Consensus       173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~  252 (416)
T 2pm9_A          173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT  252 (416)
T ss_dssp             ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS
T ss_pred             eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC
Confidence            9998 789999999999999999999998888876      7889999999987 6899999998   9999999987 6


Q ss_pred             EEEEee-CCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEE
Q psy14440        578 HVRLLT-GHKAPVYALSFSV-CGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDG-NILASSGQDCSVKL  654 (711)
Q Consensus       578 ~v~~~~-~h~~~I~~la~sp-dg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg-~~Lasgs~Dg~V~i  654 (711)
                      .+..+. +|...|++++|+| ++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|++++ .+|++++.||+|+|
T Consensus       253 ~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~i  332 (416)
T 2pm9_A          253 PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV  332 (416)
T ss_dssp             CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEE
T ss_pred             CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEE
Confidence            777888 8999999999999 99999999999999999999999999999999999999999999 89999999999999


Q ss_pred             EeCCCCCCccCccccccccc--cc-cc---------cccccceeeecccCCcceEEEEEccCCeeee-C
Q psy14440        655 WDFAKLSDEVGTEEVNLSHS--AD-IK---------NSSLAYLVRSYKTKASPLLHLIFSRRNILLR-G  710 (711)
Q Consensus       655 Wdl~~~~~~~~~~~~~~~~~--~~-~~---------~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-G  710 (711)
                      ||+.........+.......  .. ..         .......+.....+..+|.+++|+++|.+|| |
T Consensus       333 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~  401 (416)
T 2pm9_A          333 QTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQIT  401 (416)
T ss_dssp             EESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBC
T ss_pred             EEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEe
Confidence            99988665433221000000  00 00         0000001122334677899999999999999 6

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=325.24  Aligned_cols=283  Identities=17%  Similarity=0.238  Sum_probs=257.5

Q ss_pred             CceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------eeeeccCccccccccccCCcEEEE
Q psy14440        376 PSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-----------LKAMKSSDQLQDIEMECDDILVRI  444 (711)
Q Consensus       376 ps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-----------~~~~~~~~~~~~l~~~~~d~~i~i  444 (711)
                      ......++.+|.+.|+|++|++++++||+|+.||.|+||++.+.+           +..+.++.+...++.++.++.|++
T Consensus        21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL  100 (369)
T ss_dssp             CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            356778899999999999999999999999999999999987654           233455566777888899999999


Q ss_pred             EecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCe-----------EEEEEecCCC--CEE
Q psy14440        445 MDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQD-----NTIRLWSLLLWR-----------CLVVYKGHGH--PVW  506 (711)
Q Consensus       445 ~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~D-----g~V~iwdl~t~~-----------~~~~~~~h~~--~V~  506 (711)
                      ||..+++....+. |...|.+++|++++++|++++.+     |.|++||+....           .+..+..|..  .+.
T Consensus       101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          101 WDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             EETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             EECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence            9999999888887 88999999999999999999999     999999986542           3445556666  999


Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCC-CceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC
Q psy14440        507 DIKFSPHGYYFASAGHDRMARLWATDS-YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH  585 (711)
Q Consensus       507 ~v~~sp~g~~l~sgs~Dg~i~lwd~~~-~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h  585 (711)
                      +++|++++++|++++.||.|++||+++ ...+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+. +
T Consensus       180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~  258 (369)
T 3zwl_B          180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-T  258 (369)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-C
Confidence            999999999999999999999999998 78888999999999999999999999999999999999999999998888 7


Q ss_pred             CCCeEEEEEecCCCEEEEEeCCC--------------cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy14440        586 KAPVYALSFSVCGRFLASAGGDG--------------NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCS  651 (711)
Q Consensus       586 ~~~I~~la~spdg~~Lasgs~Dg--------------~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~  651 (711)
                      ...+.+++|+++++++++++.++              .|++||+.+++.+..+.+|.+.|++++|+++|++|++|+.||+
T Consensus       259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  338 (369)
T 3zwl_B          259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGF  338 (369)
T ss_dssp             SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCe
Confidence            88999999999999999999988              8999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCC
Q psy14440        652 VKLWDFAKL  660 (711)
Q Consensus       652 V~iWdl~~~  660 (711)
                      |+||++...
T Consensus       339 v~iw~~~~~  347 (369)
T 3zwl_B          339 IRLHHFEKS  347 (369)
T ss_dssp             EEEEEECHH
T ss_pred             EEEEECccc
Confidence            999999763

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.2e-36  Score=320.49  Aligned_cols=280  Identities=26%  Similarity=0.375  Sum_probs=247.9

Q ss_pred             EEEEecCCCceEEEEECCC-CCEEEEEeCCCeEEEEeCCCCc----------------eeeeccCccccccccccCCcEE
Q psy14440        380 CYTLLNARQQVTCAEISED-VSILAVGFSESYIKLWSLVPQK----------------LKAMKSSDQLQDIEMECDDILV  442 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~d-g~~LatG~~dg~I~vWdl~~~~----------------~~~~~~~~~~~~l~~~~~d~~i  442 (711)
                      ..+|.+|.+.|+|++|+|+ +++||+|+.||+|+|||+...+                +..+.++.+...++.++.|+.+
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            4579999999999999997 6899999999999999986532                2344556677788899999999


Q ss_pred             EEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE-EEEecCCCCEEEEEEcCCC--CEEEE
Q psy14440        443 RIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCL-VVYKGHGHPVWDIKFSPHG--YYFAS  519 (711)
Q Consensus       443 ~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~-~~~~~h~~~V~~v~~sp~g--~~l~s  519 (711)
                      ++|+............+...+..+.+++++.+|++|+.|+.+++||+...... ....+|...+.+++|++++  .++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence            99999999999999999999999999999999999999999999999765543 3456789999999998864  58899


Q ss_pred             EECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCC
Q psy14440        520 AGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGR  599 (711)
Q Consensus       520 gs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~  599 (711)
                      ++.|++|++||+++++.+..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+.++ ..|.+++|++++.
T Consensus       191 ~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~  269 (340)
T 4aow_A          191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRY  269 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSS
T ss_pred             EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999888754 6799999999887


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEee---------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        600 FLASAGGDGNVHMWDLSNGHLLTLLT---------GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       600 ~Lasgs~Dg~I~iwDl~sg~~i~~l~---------~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      ++ +++.|+.|++||++++..+..+.         +|...|++++|+++|++|++|+.||+|+|||+++++
T Consensus       270 ~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          270 WL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             ee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            65 55678999999999988776654         678899999999999999999999999999998643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.1e-36  Score=318.22  Aligned_cols=275  Identities=19%  Similarity=0.305  Sum_probs=248.3

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc----------------eeeeccCccccccccccCCcEE
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK----------------LKAMKSSDQLQDIEMECDDILV  442 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~----------------~~~~~~~~~~~~l~~~~~d~~i  442 (711)
                      ......+|.+.|++++|++++++|++|+ ||.|++|++.+..                +..+..+++...++.++.++.+
T Consensus        43 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  121 (337)
T 1gxr_A           43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL  121 (337)
T ss_dssp             EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred             ccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence            3445568999999999999999999999 9999999996543                2234455566778888999999


Q ss_pred             EEEecCCCe--eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEE
Q psy14440        443 RIMDERNAE--TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASA  520 (711)
Q Consensus       443 ~i~d~~~~~--~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sg  520 (711)
                      ++||..+++  ....+.+|...|++++|++++++|++++.||.|++||+.+++.+..+.+|...|.+++|++++++|+++
T Consensus       122 ~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  201 (337)
T 1gxr_A          122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG  201 (337)
T ss_dssp             EEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEE
Confidence            999998877  667788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCE
Q psy14440        521 GHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRF  600 (711)
Q Consensus       521 s~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~  600 (711)
                      +.||.|++||+++++.+..+. +...+.+++|+|++++|++++.|+.|++||+.+++. ..+..|...|.+++|+++|++
T Consensus       202 ~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~  279 (337)
T 1gxr_A          202 GLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKW  279 (337)
T ss_dssp             ETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSE
T ss_pred             ecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCE
Confidence            999999999999998877764 778899999999999999999999999999998875 466789999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        601 LASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       601 Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      |++++.||.|++||+.+++.+... .|...|.+++|++++++|++++.||.|++||+
T Consensus       280 l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          280 FVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            999999999999999999888554 47889999999999999999999999999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.9e-37  Score=336.87  Aligned_cols=278  Identities=17%  Similarity=0.199  Sum_probs=249.9

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-------ee----------eeccCcc----c---cccc
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-------LK----------AMKSSDQ----L---QDIE  434 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-------~~----------~~~~~~~----~---~~l~  434 (711)
                      ...++.+|.+.|+|++|++  ++||+|+.||.|+||++.+.+       +.          .+.+..+    .   ..++
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            3456788999999999999  899999999999999998765       22          2334445    5   6788


Q ss_pred             cccCCcEEEEEecCCCee-----EEEeecc-----cCCEEEEEEc----CCCCE-EEEEeCCCeEEEEECCC------Ce
Q psy14440        435 MECDDILVRIMDERNAET-----TRTLVGH-----EGPVRKLSFS----PDRSL-LLSCSQDNTIRLWSLLL------WR  493 (711)
Q Consensus       435 ~~~~d~~i~i~d~~~~~~-----~~~l~~h-----~~~V~~l~fs----pdg~~-L~s~s~Dg~V~iwdl~t------~~  493 (711)
                      .++.++.|++|+..+++.     ...+.+|     .+.|.+++|+    +++++ |++|+.||.|++||+.+      ++
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence            888999999999988876     8888899     5999999999    99999 99999999999999988      66


Q ss_pred             EEE-----EEe-------cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeec---C---CCCeeEEEEcCC
Q psy14440        494 CLV-----VYK-------GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG---H---YSDVDCVQFHPN  555 (711)
Q Consensus       494 ~~~-----~~~-------~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~---h---~~~V~~v~~sp~  555 (711)
                      .+.     .+.       .|...|++++|++++ +|++++.||.|++||+++++.+..+..   |   ...|.+++|+|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~  244 (397)
T 1sq9_A          166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ  244 (397)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred             eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence            555     664       489999999999999 999999999999999999999999998   9   999999999999


Q ss_pred             CCEEEEEEcC---CcEEEEECCCCcEEEEeeC-------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q psy14440        556 SNYVATGSSD---RTIRLWDCVTGSHVRLLTG-------------HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGH  619 (711)
Q Consensus       556 ~~~latgs~D---g~I~iwD~~~~~~v~~~~~-------------h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~  619 (711)
                      +++|++|+.|   |.|++||+++++.+..+.+             |...|.+++|+++|++|++|+.||.|+|||+.+++
T Consensus       245 ~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          245 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  324 (397)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            9999999999   9999999999999999998             99999999999999999999999999999999999


Q ss_pred             EEEEee------CC---------------CCCEEEEEEeCCC----------CEEEEEeCCCcEEEEeCCC
Q psy14440        620 LLTLLT------GH---------------TDVVRALCFSRDG----------NILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       620 ~i~~l~------~h---------------~~~V~sl~fspdg----------~~Lasgs~Dg~V~iWdl~~  659 (711)
                      .+..+.      +|               ...|++++|+++|          ++|++|+.||.|++||+.+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          325 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence            999999      88               9999999999998          7999999999999999875

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.8e-36  Score=356.16  Aligned_cols=278  Identities=26%  Similarity=0.375  Sum_probs=243.9

Q ss_pred             EEEEecCCCceEEEEECCCC-CEEEEEeCCCeEEEEeCCCCc----------------eeeeccCccccccccccCCcEE
Q psy14440        380 CYTLLNARQQVTCAEISEDV-SILAVGFSESYIKLWSLVPQK----------------LKAMKSSDQLQDIEMECDDILV  442 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg-~~LatG~~dg~I~vWdl~~~~----------------~~~~~~~~~~~~l~~~~~d~~i  442 (711)
                      ...+.+|.+.|+|++|++++ ++|++|+.||+|+||++....                +..+..+.+...++.++.|+.|
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence            34688999999999999865 799999999999999986421                2334556677788899999999


Q ss_pred             EEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE---ecCCCCEEEEEEcCCC--CEE
Q psy14440        443 RIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY---KGHGHPVWDIKFSPHG--YYF  517 (711)
Q Consensus       443 ~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~---~~h~~~V~~v~~sp~g--~~l  517 (711)
                      ++||..++...+.+.+|.+.|++++|++++++|++|+.|++|++||+.........   .+|...|.+++|++++  ..+
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  534 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI  534 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence            99999999999999999999999999999999999999999999998755433332   3688899999999986  689


Q ss_pred             EEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecC
Q psy14440        518 ASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVC  597 (711)
Q Consensus       518 ~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spd  597 (711)
                      ++|+.|++|++||+++++....+.+|.+.|.+++|+|++++|++|+.||+|++||+++++++..+. +...|.+++|+|+
T Consensus       535 ~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~  613 (694)
T 3dm0_A          535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPN  613 (694)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSS
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCC
Confidence            999999999999999999999999999999999999999999999999999999999999888776 4567999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeeCCC-------------------CCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        598 GRFLASAGGDGNVHMWDLSNGHLLTLLTGHT-------------------DVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       598 g~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~-------------------~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      +.+|++++ ++.|+|||+.+++.+..+..+.                   ..+++++|+++|++|++|+.||+|+|||+.
T Consensus       614 ~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          614 RYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             SSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            99888776 4569999999999888775432                   137899999999999999999999999986


Q ss_pred             C
Q psy14440        659 K  659 (711)
Q Consensus       659 ~  659 (711)
                      +
T Consensus       693 ~  693 (694)
T 3dm0_A          693 R  693 (694)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.7e-36  Score=324.60  Aligned_cols=273  Identities=19%  Similarity=0.254  Sum_probs=246.4

Q ss_pred             EeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-
Q psy14440        414 WSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW-  492 (711)
Q Consensus       414 Wdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~-  492 (711)
                      ..-....+..+.++++...++.++.|+.+++||..+++....+..|...|.+++|+|+|.+|++|+.|+.+++|++... 
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~  139 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK  139 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence            3334455666777777888999999999999999999999999999999999999999999999999999999998543 


Q ss_pred             -----eEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcC--CCCEEEEEEcC
Q psy14440        493 -----RCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP--NSNYVATGSSD  565 (711)
Q Consensus       493 -----~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp--~~~~latgs~D  565 (711)
                           .....+.+|...|.+++|++++..|++++.|++|++||+++++.+..+.+|...|.+++|++  ++++|++|+.|
T Consensus       140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~D  219 (354)
T 2pbi_B          140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD  219 (354)
T ss_dssp             TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETT
T ss_pred             cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCC
Confidence                 34556778999999999999999999999999999999999999999999999999999988  57899999999


Q ss_pred             CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCC--CCCEEEEEEeCCCCEE
Q psy14440        566 RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGH--TDVVRALCFSRDGNIL  643 (711)
Q Consensus       566 g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h--~~~V~sl~fspdg~~L  643 (711)
                      |+|++||+++++++..+.+|...|++++|+|+|++|++|+.||+|++||+++++.+..+..+  ...+.+++|+++|++|
T Consensus       220 g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  299 (354)
T 2pbi_B          220 KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL  299 (354)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999888777644  3578999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        644 ASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       644 asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      ++|+.||+|++||+.+.                       ..+..+..|..+|.+|+|++++.+||
T Consensus       300 ~~g~~d~~i~vwd~~~~-----------------------~~~~~l~~h~~~v~~l~~spdg~~l~  342 (354)
T 2pbi_B          300 FAGYNDYTINVWDVLKG-----------------------SRVSILFGHENRVSTLRVSPDGTAFC  342 (354)
T ss_dssp             EEEETTSCEEEEETTTC-----------------------SEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             EEEECCCcEEEEECCCC-----------------------ceEEEEECCCCcEEEEEECCCCCEEE
Confidence            99999999999998642                       23456778999999999999999988

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.6e-37  Score=328.53  Aligned_cols=275  Identities=23%  Similarity=0.367  Sum_probs=241.5

Q ss_pred             EEecCCCceEEEEECCC----CCEEEEEeCCCeEEEEeCCCCce----------------eeeccCcc----cccccccc
Q psy14440        382 TLLNARQQVTCAEISED----VSILAVGFSESYIKLWSLVPQKL----------------KAMKSSDQ----LQDIEMEC  437 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~d----g~~LatG~~dg~I~vWdl~~~~~----------------~~~~~~~~----~~~l~~~~  437 (711)
                      ...+|.+.|++++|+|+    ...+++++.++.|+||++.+.+.                ..+.++.+    ...++.++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34589999999999984    45666666777999999975432                22233333    34688899


Q ss_pred             CCcEEEEEecCCCeeEEEeecccCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEE---ecCCCCEEEEEEcCC
Q psy14440        438 DDILVRIMDERNAETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVY---KGHGHPVWDIKFSPH  513 (711)
Q Consensus       438 ~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t~~~~~~~---~~h~~~V~~v~~sp~  513 (711)
                      .++.|++||..+++....+.+|.+.|++++|++ ++++|++|+.||+|++||+.+++.+..+   .+|...|.+++|+++
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence            999999999999999999999999999999999 9999999999999999999999999998   689999999999999


Q ss_pred             CCEEEEEECCCeEEEEECCCCceeEEee----------------------------cCCCCeeEEEEcCCCCEEEEEEcC
Q psy14440        514 GYYFASAGHDRMARLWATDSYHPLRLFV----------------------------GHYSDVDCVQFHPNSNYVATGSSD  565 (711)
Q Consensus       514 g~~l~sgs~Dg~i~lwd~~~~~~~~~~~----------------------------~h~~~V~~v~~sp~~~~latgs~D  565 (711)
                      +.+|++++.||.|++||+++++.+..+.                            +|...|.+++|+  +++|++++.|
T Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d  250 (366)
T 3k26_A          173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE  250 (366)
T ss_dssp             SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred             CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence            9999999999999999999876544333                            399999999998  7899999999


Q ss_pred             CcEEEEECCCCcE--------------EEEeeCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCe----EEEEee
Q psy14440        566 RTIRLWDCVTGSH--------------VRLLTGHKAPVYALSFSVC--GRFLASAGGDGNVHMWDLSNGH----LLTLLT  625 (711)
Q Consensus       566 g~I~iwD~~~~~~--------------v~~~~~h~~~I~~la~spd--g~~Lasgs~Dg~I~iwDl~sg~----~i~~l~  625 (711)
                      |.|++||+.++..              +..+.+|...|++++|+++  |++|++|+.||.|++||+.+++    .+..+.
T Consensus       251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  330 (366)
T 3k26_A          251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT  330 (366)
T ss_dssp             SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC
T ss_pred             CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc
Confidence            9999999988754              7888899999999999999  9999999999999999999875    556788


Q ss_pred             CC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        626 GH--TDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       626 ~h--~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      +|  .+.|++++|++++++|++|+.||.|++||+.
T Consensus       331 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          331 HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            87  6899999999999999999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.2e-37  Score=328.94  Aligned_cols=285  Identities=16%  Similarity=0.204  Sum_probs=244.3

Q ss_pred             CceEEEEEecCCCceEEEEECCCCC-EEEEEeC---CCeEEEEeCCCCcee------------eeccCcc---ccccccc
Q psy14440        376 PSIACYTLLNARQQVTCAEISEDVS-ILAVGFS---ESYIKLWSLVPQKLK------------AMKSSDQ---LQDIEME  436 (711)
Q Consensus       376 ps~~~~tl~~h~~~V~~l~fs~dg~-~LatG~~---dg~I~vWdl~~~~~~------------~~~~~~~---~~~l~~~  436 (711)
                      |.+..+.+.+|.+.|++++|+|++. ++++|+.   ||.|+||++.+.+..            .+.++.+   ...++.+
T Consensus         7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~   86 (357)
T 3i2n_A            7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG   86 (357)
T ss_dssp             CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred             hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence            5566777889999999999999995 5566766   999999999876532            2334444   4778888


Q ss_pred             cCCcEEEEEecCCCe-eEEEeecccCCEEEEEE------cCCCCEEEEEeCCCeEEEEECCCCe-EEEEEecCCC----C
Q psy14440        437 CDDILVRIMDERNAE-TTRTLVGHEGPVRKLSF------SPDRSLLLSCSQDNTIRLWSLLLWR-CLVVYKGHGH----P  504 (711)
Q Consensus       437 ~~d~~i~i~d~~~~~-~~~~l~~h~~~V~~l~f------spdg~~L~s~s~Dg~V~iwdl~t~~-~~~~~~~h~~----~  504 (711)
                      +.++.|++||..+++ ....+.+|.+.|.+++|      ++++++|++|+.||+|++||+.+++ .+..+..|..    .
T Consensus        87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (357)
T 3i2n_A           87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD  166 (357)
T ss_dssp             ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred             cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence            999999999999888 88899999999999955      6799999999999999999999886 6777776654    8


Q ss_pred             EEEEE----EcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcC---CCCEEEEEEcCCcEEEEECCCCc
Q psy14440        505 VWDIK----FSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP---NSNYVATGSSDRTIRLWDCVTGS  577 (711)
Q Consensus       505 V~~v~----~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp---~~~~latgs~Dg~I~iwD~~~~~  577 (711)
                      |++++    |++++.++++++.||.|++||+++++... ...|...|.+++|+|   ++++|++|+.||.|++||+++++
T Consensus       167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred             eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence            99998    78899999999999999999999987644 457889999999999   99999999999999999998876


Q ss_pred             EEEEee-----CCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCC-------------------eEEEEeeCCCCCEE
Q psy14440        578 HVRLLT-----GHKAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNG-------------------HLLTLLTGHTDVVR  632 (711)
Q Consensus       578 ~v~~~~-----~h~~~I~~la~spdg~-~Lasgs~Dg~I~iwDl~sg-------------------~~i~~l~~h~~~V~  632 (711)
                      .+..+.     +|...|++++|+|+++ +|++|+.||.|++||++++                   +.+..+.+|.+.|+
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~  325 (357)
T 3i2n_A          246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS  325 (357)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred             cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence            654444     8999999999999998 8999999999999998754                   46788899999999


Q ss_pred             EEEEeCCCCEEE-EEeCCCcEEEEeCCCCC
Q psy14440        633 ALCFSRDGNILA-SSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       633 sl~fspdg~~La-sgs~Dg~V~iWdl~~~~  661 (711)
                      +++|+++|++|+ +|+.||.|+|||+.++.
T Consensus       326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          326 SLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             EEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            999999999888 89999999999998753

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-36  Score=329.30  Aligned_cols=275  Identities=18%  Similarity=0.199  Sum_probs=237.0

Q ss_pred             EEEEEecCCCceEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcee-------------eeccCc-cccccccccCCcEEE
Q psy14440        379 ACYTLLNARQQVTCAEISEDV-SILAVGFSESYIKLWSLVPQKLK-------------AMKSSD-QLQDIEMECDDILVR  443 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg-~~LatG~~dg~I~vWdl~~~~~~-------------~~~~~~-~~~~l~~~~~d~~i~  443 (711)
                      ...++.+|.+.|+|++|++++ ++||+|+.||.|+||++.+.+..             .+.+++ +...++.++.++.|+
T Consensus        65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~  144 (383)
T 3ei3_B           65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT  144 (383)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred             eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence            455788999999999999999 99999999999999999765432             233444 456788888999999


Q ss_pred             EEecCCCeeEEEeecc---cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCC-EEEE
Q psy14440        444 IMDERNAETTRTLVGH---EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGY-YFAS  519 (711)
Q Consensus       444 i~d~~~~~~~~~l~~h---~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~-~l~s  519 (711)
                      +||..+ .....+..|   ...|.+++|++++++|++|+.||.|++||+ +++.+..+.+|...|.+++|+|++. +|++
T Consensus       145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  222 (383)
T 3ei3_B          145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMAT  222 (383)
T ss_dssp             EEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEE
T ss_pred             EEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEE
Confidence            999885 555555544   488999999999999999999999999999 5788899999999999999999998 9999


Q ss_pred             EECCCeEEEEECCC----CceeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCC--------
Q psy14440        520 AGHDRMARLWATDS----YHPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHK--------  586 (711)
Q Consensus       520 gs~Dg~i~lwd~~~----~~~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~--------  586 (711)
                      |+.|++|++||+++    +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.+|.        
T Consensus       223 ~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  301 (383)
T 3ei3_B          223 SSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT  301 (383)
T ss_dssp             EETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred             EeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence            99999999999987    5566666 7999999999999 99999999999999999999988877776543        


Q ss_pred             ---------CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC--CCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy14440        587 ---------APVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG--HTDVVRALCFSRDGNILASSGQDCSVKLW  655 (711)
Q Consensus       587 ---------~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~--h~~~V~sl~fspdg~~Lasgs~Dg~V~iW  655 (711)
                               +.+..++|+++|++  +|+.||.|+|||+.+++.+..+.+  |.+.+..++|+++|++|++|+ ||+|+||
T Consensus       302 ~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw  378 (383)
T 3ei3_B          302 PIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIW  378 (383)
T ss_dssp             CCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEE
T ss_pred             ceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEE
Confidence                     34455677777776  778999999999999999999987  457788889999999999997 9999999


Q ss_pred             eCCC
Q psy14440        656 DFAK  659 (711)
Q Consensus       656 dl~~  659 (711)
                      |+++
T Consensus       379 ~~~~  382 (383)
T 3ei3_B          379 NRED  382 (383)
T ss_dssp             ECC-
T ss_pred             ecCC
Confidence            9874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=325.54  Aligned_cols=250  Identities=24%  Similarity=0.415  Sum_probs=217.4

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCE
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV  463 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V  463 (711)
                      .+|...|++++|+|+|++||+|+.|+.|+||++...                             ..+....+.+|.+.|
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~-----------------------------~~~~~~~~~~h~~~v  108 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-----------------------------DFECVTTLEGHENEV  108 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC------------------------------EEEEEEECCCSSCE
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC-----------------------------CeEEEEEccCCCCCc
Confidence            579999999999999999999999999999997532                             123456788999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc--eeE
Q psy14440        464 RKLSFSPDRSLLLSCSQDNTIRLWSLLLW---RCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH--PLR  538 (711)
Q Consensus       464 ~~l~fspdg~~L~s~s~Dg~V~iwdl~t~---~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~--~~~  538 (711)
                      ++++|+|++++|++|+.|++|++||+.++   .++..+.+|...|.+++|+|++.+|++|+.|++|++||.+++.  ...
T Consensus       109 ~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~  188 (345)
T 3fm0_A          109 KSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA  188 (345)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             eEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE
Confidence            99999999999999999999999999765   4567788999999999999999999999999999999998775  456


Q ss_pred             EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC---------------cEEEEeeC-CCCCeEEEEEecCCCEEE
Q psy14440        539 LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG---------------SHVRLLTG-HKAPVYALSFSVCGRFLA  602 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~---------------~~v~~~~~-h~~~I~~la~spdg~~La  602 (711)
                      .+.+|...|.+++|+|++++|++|+.|++|+|||....               +++..+.+ |...|++++|++++..|+
T Consensus       189 ~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~  268 (345)
T 3fm0_A          189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALA  268 (345)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEE
T ss_pred             EecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEE
Confidence            78899999999999999999999999999999996321               34555555 889999999999999999


Q ss_pred             EEeCCCcEEEEECCCCe---------EEEEeeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCCC
Q psy14440        603 SAGGDGNVHMWDLSNGH---------LLTLLTGHTDVVRALCFSRDG-NILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       603 sgs~Dg~I~iwDl~sg~---------~i~~l~~h~~~V~sl~fspdg-~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      +++.|+.|++|+...+.         ......+|.+.|++++|+|++ .+||+||.||+|++|++.....
T Consensus       269 s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          269 TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             EEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred             EEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence            99999999999987542         122346899999999999987 5999999999999999987543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.5e-36  Score=316.46  Aligned_cols=250  Identities=23%  Similarity=0.370  Sum_probs=225.4

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      .+..++..|...|.+++|++++++|++|+.|+.|++||+.                               +++.+..+.
T Consensus        46 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~-------------------------------~~~~~~~~~   94 (304)
T 2ynn_A           46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-------------------------------TGEKVVDFE   94 (304)
T ss_dssp             EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT-------------------------------TCCEEEEEE
T ss_pred             ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC-------------------------------CCcEEEEEe
Confidence            3566788999999999999999999999999999999984                               345567788


Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCc
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW-RCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMARLWATDSYH  535 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~-~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~~~~~  535 (711)
                      +|.+.|++++|+|++.+|++|+.||+|++||+.++ .....+.+|...|.+++|+| ++.+|++|+.|++|++||+++..
T Consensus        95 ~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~  174 (304)
T 2ynn_A           95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST  174 (304)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS
T ss_pred             CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            99999999999999999999999999999999876 56678899999999999999 67899999999999999998877


Q ss_pred             eeEEee-cCCCCeeEEEEcC--CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q psy14440        536 PLRLFV-GHYSDVDCVQFHP--NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHM  612 (711)
Q Consensus       536 ~~~~~~-~h~~~V~~v~~sp--~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~i  612 (711)
                      ....+. +|...+.+++|++  ++.+|++|+.|++|++||+++++++..+.+|...|.+++|+|++.+|++|+.||+|++
T Consensus       175 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~i  254 (304)
T 2ynn_A          175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI  254 (304)
T ss_dssp             CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEE
Confidence            665554 5668899999987  7789999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCeEEEEeeCCCCCEEEEEEeCCCC--EEEEEeCCCcEEEEeCCC
Q psy14440        613 WDLSNGHLLTLLTGHTDVVRALCFSRDGN--ILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       613 wDl~sg~~i~~l~~h~~~V~sl~fspdg~--~Lasgs~Dg~V~iWdl~~  659 (711)
                      ||+.+++.+..+..|...+++++|++++.  ++++|+ |+.+.+|++.+
T Consensus       255 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~  302 (304)
T 2ynn_A          255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN  302 (304)
T ss_dssp             EETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred             EECCCCceeeeccCCCccEEEEEECCCCCceEEEEec-CCceEEEEecc
Confidence            99999999999999999999999999875  577766 55678888764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.8e-36  Score=316.79  Aligned_cols=298  Identities=17%  Similarity=0.268  Sum_probs=258.1

Q ss_pred             cCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCC-----------CceeeeccCccccccccccCCcEEEEEecCCCee-
Q psy14440        385 NARQQVTCAEISEDVSILAVGFSESYIKLWSLVP-----------QKLKAMKSSDQLQDIEMECDDILVRIMDERNAET-  452 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~-----------~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-  452 (711)
                      .+.+.|.+++|++||++++++..++.+.+|....           ..+..+..+++...++.++ ++.+++|+..++.. 
T Consensus         7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~   85 (337)
T 1gxr_A            7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK   85 (337)
T ss_dssp             EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred             ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence            4567899999999999999998777666654432           2344556666777777777 99999999876543 


Q ss_pred             --EEEee--cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCEEEEEEcCCCCEEEEEECCCeE
Q psy14440        453 --TRTLV--GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR--CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMA  526 (711)
Q Consensus       453 --~~~l~--~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~--~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i  526 (711)
                        ...+.  +|.+.|.+++|++++++|++++.||.|++||+.+++  ....+..|...|++++|+++++++++++.||.|
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v  165 (337)
T 1gxr_A           86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI  165 (337)
T ss_dssp             SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence              23333  799999999999999999999999999999999877  667788899999999999999999999999999


Q ss_pred             EEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeC
Q psy14440        527 RLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~  606 (711)
                      ++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+. +...+.+++|+++|++|++++.
T Consensus       166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~  244 (337)
T 1gxr_A          166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME  244 (337)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcC
Confidence            999999999999999999999999999999999999999999999999999888775 7888999999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcccccccccccccccccccee
Q psy14440        607 DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLV  686 (711)
Q Consensus       607 Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  686 (711)
                      ||.|++||+.+++.. .+..|.+.|.+++|++++++|++++.||.|++||+.....                       +
T Consensus       245 ~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-----------------------~  300 (337)
T 1gxr_A          245 SSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-----------------------I  300 (337)
T ss_dssp             TSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------E
T ss_pred             CCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE-----------------------E
Confidence            999999999988764 6778999999999999999999999999999999875321                       1


Q ss_pred             eecccCCcceEEEEEccCCeeee
Q psy14440        687 RSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       687 ~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                       ....+..+|.+++|++++.+|+
T Consensus       301 -~~~~~~~~v~~~~~s~~~~~l~  322 (337)
T 1gxr_A          301 -FQSKESSSVLSCDISVDDKYIV  322 (337)
T ss_dssp             -EEEECSSCEEEEEECTTSCEEE
T ss_pred             -EEecCCCcEEEEEECCCCCEEE
Confidence             1123578899999999998887

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-35  Score=311.26  Aligned_cols=273  Identities=25%  Similarity=0.355  Sum_probs=246.0

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------eeeeccCccccccccccCCcEEEEEe
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-----------LKAMKSSDQLQDIEMECDDILVRIMD  446 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-----------~~~~~~~~~~~~l~~~~~d~~i~i~d  446 (711)
                      ....++.+|.+.|+|++| +++++||+|+.||.|++|++.+.+           +..+..+++...++.++.++.+++|+
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            456778999999999999 999999999999999999997654           23345566677888999999999998


Q ss_pred             cCCC---eeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcC-CCCEEEEEEC
Q psy14440        447 ERNA---ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP-HGYYFASAGH  522 (711)
Q Consensus       447 ~~~~---~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~  522 (711)
                      ....   +....+.+|.+.|.+++|  ++++|++++.||.|++||  .++....+..|...|.+++|++ ++.++++++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  163 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA  163 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred             eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence            7543   567788999999999999  678999999999999999  6788889999999999999998 8999999999


Q ss_pred             CCeEEEEECCCCceeEEeec-CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEE
Q psy14440        523 DRMARLWATDSYHPLRLFVG-HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFL  601 (711)
Q Consensus       523 Dg~i~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~L  601 (711)
                      ||.|++||  ..+....+.. |...|.+++|++++. +++|+.||.|++||+++++.+..+.+|.+.|++++|+++| .|
T Consensus       164 d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l  239 (313)
T 3odt_A          164 DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DI  239 (313)
T ss_dssp             TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CE
T ss_pred             CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CE
Confidence            99999999  4566777777 899999999999988 9999999999999999999999999999999999999999 58


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        602 ASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       602 asgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      ++|+.||.|++||+.+++.+..+..|...|.+++|+++++ +++++.||.|++||+.+.
T Consensus       240 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          240 VSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             EEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             EEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence            8999999999999999999999999999999999999998 667999999999999764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.4e-36  Score=315.57  Aligned_cols=252  Identities=21%  Similarity=0.334  Sum_probs=225.8

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccC
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEG  461 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~  461 (711)
                      .+.+|.+.|+|++|++++++||+|+.||.|+||++.+..                           ...+....+.+|.+
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------------------------~~~~~~~~~~~~~~   58 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT---------------------------SNWELSDSWRAHDS   58 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS---------------------------CCEEEEEEEECCSS
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC---------------------------CcceecceeccCCC
Confidence            357899999999999999999999999999999986422                           11234567789999


Q ss_pred             CEEEEEEcC--CCCEEEEEeCCCeEEEEECCCC---------eEEEEEecCCCCEEEEEEcCC--CCEEEEEECCCeEEE
Q psy14440        462 PVRKLSFSP--DRSLLLSCSQDNTIRLWSLLLW---------RCLVVYKGHGHPVWDIKFSPH--GYYFASAGHDRMARL  528 (711)
Q Consensus       462 ~V~~l~fsp--dg~~L~s~s~Dg~V~iwdl~t~---------~~~~~~~~h~~~V~~v~~sp~--g~~l~sgs~Dg~i~l  528 (711)
                      .|++++|++  ++++|++|+.||+|++||+.++         +.+..+.+|...|++++|+++  +.+|++++.||.|++
T Consensus        59 ~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i  138 (351)
T 3f3f_A           59 SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRL  138 (351)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEE
T ss_pred             cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEE
Confidence            999999999  6999999999999999999876         678889999999999999999  999999999999999


Q ss_pred             EECCCCceeEEee-------------cCCCCeeEEEEcCC---CCEEEEEEcCCcEEEEECCCCcE--EEEeeCCCCCeE
Q psy14440        529 WATDSYHPLRLFV-------------GHYSDVDCVQFHPN---SNYVATGSSDRTIRLWDCVTGSH--VRLLTGHKAPVY  590 (711)
Q Consensus       529 wd~~~~~~~~~~~-------------~h~~~V~~v~~sp~---~~~latgs~Dg~I~iwD~~~~~~--v~~~~~h~~~I~  590 (711)
                      ||+++++.+..+.             +|...+.+++|+|+   +.++++++.|+.+.+|+...++.  +..+.+|...|+
T Consensus       139 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  218 (351)
T 3f3f_A          139 YDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIR  218 (351)
T ss_dssp             EECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEE
T ss_pred             ecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCccee
Confidence            9999877554433             68889999999997   99999999999999998888765  677889999999


Q ss_pred             EEEEecCC----CEEEEEeCCCcEEEEECCCC----------------------------------------------eE
Q psy14440        591 ALSFSVCG----RFLASAGGDGNVHMWDLSNG----------------------------------------------HL  620 (711)
Q Consensus       591 ~la~spdg----~~Lasgs~Dg~I~iwDl~sg----------------------------------------------~~  620 (711)
                      +++|+|++    ++|++|+.||.|++||++++                                              +.
T Consensus       219 ~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (351)
T 3f3f_A          219 SISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL  298 (351)
T ss_dssp             EEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEE
T ss_pred             EEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccE
Confidence            99999998    89999999999999999875                                              67


Q ss_pred             EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        621 LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       621 i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      +..+.+|.+.|++++|++++++|++|+.||.|+|||+...
T Consensus       299 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          299 LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             EEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             EEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence            7888899999999999999999999999999999999863

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.4e-35  Score=312.69  Aligned_cols=268  Identities=24%  Similarity=0.468  Sum_probs=243.4

Q ss_pred             CceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Q psy14440        419 QKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY  498 (711)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~  498 (711)
                      ..+..+.++++...++.++.++.+++|+..+++....+.+|...|.+++|++++++|++|+.||+|++||+.+++++..+
T Consensus        24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  103 (312)
T 4ery_A           24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL  103 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence            34555666777788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE
Q psy14440        499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH  578 (711)
Q Consensus       499 ~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~  578 (711)
                      .+|...|.+++|+|++++|++|+.|++|++||+++++.+..+..|...|.+++|++++++|++|+.||.|++||+++++.
T Consensus       104 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~  183 (312)
T 4ery_A          104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC  183 (312)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EEEee-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEE--EEEe-CCCCEEEEEeCCCcEEE
Q psy14440        579 VRLLT-GHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRA--LCFS-RDGNILASSGQDCSVKL  654 (711)
Q Consensus       579 v~~~~-~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~s--l~fs-pdg~~Lasgs~Dg~V~i  654 (711)
                      +..+. .+...+.+++|+|+|++|++++.||.|++||+.+++.+..+.+|...+..  ..|+ +++.+|++|+.||.|++
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~v  263 (312)
T 4ery_A          184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI  263 (312)
T ss_dssp             EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEE
T ss_pred             eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEE
Confidence            87764 56678999999999999999999999999999999999999988764322  2344 67889999999999999


Q ss_pred             EeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        655 WDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       655 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      ||+.+                       ..++..+..|...|.+++|++++.+||
T Consensus       264 wd~~~-----------------------~~~~~~~~~h~~~v~~~~~~p~~~~l~  295 (312)
T 4ery_A          264 WNLQT-----------------------KEIVQKLQGHTDVVISTACHPTENIIA  295 (312)
T ss_dssp             EETTT-----------------------CCEEEEECCCSSCEEEEEECSSSSEEE
T ss_pred             EECCC-----------------------chhhhhhhccCCcEEEEeecCcCCceE
Confidence            99864                       234566888999999999999999887

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.1e-37  Score=327.41  Aligned_cols=249  Identities=24%  Similarity=0.343  Sum_probs=211.9

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      ..+.+|.+.|++++|+++|++||+|+.|++|+|||+.+..                             ......+.+|.
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-----------------------------~~~~~~l~gH~   57 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-----------------------------QILIADLRGHE   57 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-----------------------------EEEEEEEECCS
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-----------------------------cEEEEEEcCCC
Confidence            3467899999999999999999999999999999974321                             12356788999


Q ss_pred             CCEEEEEEcC--CCCEEEEEeCCCeEEEEECCCC--eEEEEEecCCCCEEEEEEcCC--CCEEEEEECCCeEEEEECCCC
Q psy14440        461 GPVRKLSFSP--DRSLLLSCSQDNTIRLWSLLLW--RCLVVYKGHGHPVWDIKFSPH--GYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       461 ~~V~~l~fsp--dg~~L~s~s~Dg~V~iwdl~t~--~~~~~~~~h~~~V~~v~~sp~--g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      +.|++++|++  ++++|++|+.|++|++||+.++  .....+.+|...|++++|+|+  +.+|++|+.|++|++||++..
T Consensus        58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            9999999986  4899999999999999999876  466778899999999999997  789999999999999999876


Q ss_pred             ce---eEEeecCCCCeeEEEEcCC-----------------CCEEEEEEcCCcEEEEECCCC---cEEEEeeCCCCCeEE
Q psy14440        535 HP---LRLFVGHYSDVDCVQFHPN-----------------SNYVATGSSDRTIRLWDCVTG---SHVRLLTGHKAPVYA  591 (711)
Q Consensus       535 ~~---~~~~~~h~~~V~~v~~sp~-----------------~~~latgs~Dg~I~iwD~~~~---~~v~~~~~h~~~I~~  591 (711)
                      ..   ...+.+|...|.+++|+|+                 +++|++|+.|++|++||++.+   +.+..+.+|...|.+
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~  217 (316)
T 3bg1_A          138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD  217 (316)
T ss_dssp             SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEE
T ss_pred             CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEE
Confidence            32   3456789999999999997                 478999999999999999765   467788899999999


Q ss_pred             EEEecCC----CEEEEEeCCCcEEEEECCCC---e-EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        592 LSFSVCG----RFLASAGGDGNVHMWDLSNG---H-LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       592 la~spdg----~~Lasgs~Dg~I~iwDl~sg---~-~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      ++|+|++    ++|++|+.||+|+|||+.++   + ....+..|.+.|++++|+|+|++|++|+.||+|+||+..
T Consensus       218 v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          218 VAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            9999987    89999999999999998762   1 223456788999999999999999999999999999975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-36  Score=321.10  Aligned_cols=251  Identities=25%  Similarity=0.369  Sum_probs=223.2

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      ..++.+|.+.|++++|++++++||+|+.||.|+||++..                             .+......+.+|
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-----------------------------~~~~~~~~~~~h   54 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-----------------------------ETHKLIDTLTGH   54 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEET-----------------------------TEEEEEEEECCC
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCC-----------------------------CcceeeeEecCC
Confidence            345789999999999999999999999999999999842                             233456778899


Q ss_pred             cCCEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCEEEEEEcCC--CCEEEEEECCCeEEEEECCC
Q psy14440        460 EGPVRKLSFSPD--RSLLLSCSQDNTIRLWSLLLWR--CLVVYKGHGHPVWDIKFSPH--GYYFASAGHDRMARLWATDS  533 (711)
Q Consensus       460 ~~~V~~l~fspd--g~~L~s~s~Dg~V~iwdl~t~~--~~~~~~~h~~~V~~v~~sp~--g~~l~sgs~Dg~i~lwd~~~  533 (711)
                      .+.|++++|+++  +++|++|+.||+|++||+.+++  .+..+.+|...|++++|+++  +.+|++++.||.|++||++.
T Consensus        55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~  134 (379)
T 3jrp_A           55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE  134 (379)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT
T ss_pred             CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC
Confidence            999999999987  9999999999999999999887  77888889999999999999  99999999999999999988


Q ss_pred             Cc--eeEEeecCCCCeeEEEEcC-------------CCCEEEEEEcCCcEEEEECCCCc----EEEEeeCCCCCeEEEEE
Q psy14440        534 YH--PLRLFVGHYSDVDCVQFHP-------------NSNYVATGSSDRTIRLWDCVTGS----HVRLLTGHKAPVYALSF  594 (711)
Q Consensus       534 ~~--~~~~~~~h~~~V~~v~~sp-------------~~~~latgs~Dg~I~iwD~~~~~----~v~~~~~h~~~I~~la~  594 (711)
                      ..  ....+.+|...|.+++|+|             ++.+|++|+.||.|++||++++.    .+..+.+|...|++++|
T Consensus       135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~  214 (379)
T 3jrp_A          135 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW  214 (379)
T ss_dssp             TSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred             CCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE
Confidence            73  4456778999999999999             69999999999999999998764    45677889999999999


Q ss_pred             ecC---CCEEEEEeCCCcEEEEECCCCe---EEEEe--eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        595 SVC---GRFLASAGGDGNVHMWDLSNGH---LLTLL--TGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       595 spd---g~~Lasgs~Dg~I~iwDl~sg~---~i~~l--~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      +|+   +++|++|+.||.|++||+.++.   ....+  ..|...|++++|+++|++|++++.||.|++||+..
T Consensus       215 sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          215 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            999   8999999999999999998864   22333  34888999999999999999999999999999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.7e-36  Score=319.70  Aligned_cols=246  Identities=19%  Similarity=0.272  Sum_probs=222.8

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCE
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV  463 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V  463 (711)
                      ..|.+.|++++|++++++||+|+.|+.|++|++.+.+                             .+....+.+|.+.|
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-----------------------------~~~~~~~~~h~~~v   55 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----------------------------WVQVHELKEHNGQV   55 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----------------------------EEEEEEEECCSSCE
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-----------------------------EEeeeeecCCCCcc
Confidence            3488999999999999999999999999999975321                             12566778999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE--ecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce----e
Q psy14440        464 RKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY--KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP----L  537 (711)
Q Consensus       464 ~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~--~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~----~  537 (711)
                      ++++|++++++|++++.||+|++||+.+++....+  ..|...|.+++|++++++|++++.|+.|++||++....    .
T Consensus        56 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~  135 (372)
T 1k8k_C           56 TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK  135 (372)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred             cEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee
Confidence            99999999999999999999999999888765544  56899999999999999999999999999999988763    2


Q ss_pred             EEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC------------------CCCcEEEEeeCCCCCeEEEEEecCCC
Q psy14440        538 RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDC------------------VTGSHVRLLTGHKAPVYALSFSVCGR  599 (711)
Q Consensus       538 ~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~------------------~~~~~v~~~~~h~~~I~~la~spdg~  599 (711)
                      ....+|...|.+++|+|++++|++|+.||.|++||+                  .+++.+..+.+|...|.+++|+++|+
T Consensus       136 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  215 (372)
T 1k8k_C          136 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS  215 (372)
T ss_dssp             EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred             eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC
Confidence            333578999999999999999999999999999995                  46888999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        600 FLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       600 ~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      +|++++.||.|++||+++++.+..+..|...|.+++|++++.+|++| .||.|++||+..
T Consensus       216 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          216 RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            99999999999999999999999999999999999999999988877 899999999976

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6e-35  Score=335.19  Aligned_cols=306  Identities=16%  Similarity=0.247  Sum_probs=269.3

Q ss_pred             eEEEEEecCCCc-eEEEEECC--CCCEEEEEeCCCeEEEEeCCCC-------------------ceeeeccCcccccccc
Q psy14440        378 IACYTLLNARQQ-VTCAEISE--DVSILAVGFSESYIKLWSLVPQ-------------------KLKAMKSSDQLQDIEM  435 (711)
Q Consensus       378 ~~~~tl~~h~~~-V~~l~fs~--dg~~LatG~~dg~I~vWdl~~~-------------------~~~~~~~~~~~~~l~~  435 (711)
                      .....+.+|.+. |++++|+|  |+++||+|+.||.|+||++.+.                   .+..+.++++...++.
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            356778899999 99999999  9999999999999999999532                   1233445566666777


Q ss_pred             ccCC----cEEEEEecCCCeeEEEeecccCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCCC---CEEE
Q psy14440        436 ECDD----ILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSLLLWRCLVVYKGHGH---PVWD  507 (711)
Q Consensus       436 ~~~d----~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~-~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~---~V~~  507 (711)
                      ++.+    +.+.+||  .++....+.+|.+.|++++|+++++ .|++++.|+.|++||+.+++.+..+.+|..   .|++
T Consensus       134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~  211 (615)
T 1pgu_A          134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD  211 (615)
T ss_dssp             EECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred             eccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEE
Confidence            6665    7888888  6678889999999999999999998 899999999999999999999999999999   9999


Q ss_pred             EEEcCC-CCEEEEEECCCeEEEEECCCCceeEEe-e---cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-
Q psy14440        508 IKFSPH-GYYFASAGHDRMARLWATDSYHPLRLF-V---GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRL-  581 (711)
Q Consensus       508 v~~sp~-g~~l~sgs~Dg~i~lwd~~~~~~~~~~-~---~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~-  581 (711)
                      ++|+|+ +++|++++.||.|++||+++++.+..+ .   +|...|.+++|+ ++++|++++.||.|++||+.+++.+.. 
T Consensus       212 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~  290 (615)
T 1pgu_A          212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKW  290 (615)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence            999999 999999999999999999999999988 6   899999999999 999999999999999999875432221 


Q ss_pred             --------------------------------------------------------------------------------
Q psy14440        582 --------------------------------------------------------------------------------  581 (711)
Q Consensus       582 --------------------------------------------------------------------------------  581 (711)
                                                                                                      
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~  370 (615)
T 1pgu_A          291 TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQD  370 (615)
T ss_dssp             ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECC
T ss_pred             cCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCc
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy14440        582 --------------------------------------------------------------------------------  581 (711)
Q Consensus       582 --------------------------------------------------------------------------------  581 (711)
                                                                                                      
T Consensus       371 ~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (615)
T 1pgu_A          371 HSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS  450 (615)
T ss_dssp             CCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred             ccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence                                                                                            


Q ss_pred             ---------------------------------eeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC-C
Q psy14440        582 ---------------------------------LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG-H  627 (711)
Q Consensus       582 ---------------------------------~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~-h  627 (711)
                                                       +.+|...|++++|+|+|++|++|+.||.|++||+.+++.+..+.+ |
T Consensus       451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h  530 (615)
T 1pgu_A          451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR  530 (615)
T ss_dssp             EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC
T ss_pred             EEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCC
Confidence                                             123556788999999999999999999999999999999999988 9


Q ss_pred             CCCEEEEEEeC----------CCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceE
Q psy14440        628 TDVVRALCFSR----------DGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLL  697 (711)
Q Consensus       628 ~~~V~sl~fsp----------dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~  697 (711)
                      ...|++++|++          ++++|++|+.||+|++||+....                      .++..+..|..+|.
T Consensus       531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------------------~~~~~~~~h~~~v~  588 (615)
T 1pgu_A          531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM----------------------KIIKALNAHKDGVN  588 (615)
T ss_dssp             SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT----------------------CCEEETTSSTTCEE
T ss_pred             CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc----------------------eechhhhcCccceE
Confidence            99999999999          99999999999999999996521                      34556888999999


Q ss_pred             EEEEccCCeeee
Q psy14440        698 HLIFSRRNILLR  709 (711)
Q Consensus       698 ~v~Fs~~n~lla  709 (711)
                      +|+|++++. |+
T Consensus       589 ~l~~s~~~~-l~  599 (615)
T 1pgu_A          589 NLLWETPST-LV  599 (615)
T ss_dssp             EEEEEETTE-EE
T ss_pred             EEEEcCCCC-eE
Confidence            999999998 65

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.6e-35  Score=324.85  Aligned_cols=294  Identities=27%  Similarity=0.458  Sum_probs=259.2

Q ss_pred             EEEecCCCce-EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccC---------ccccccccccCCcEEEEEecCCC
Q psy14440        381 YTLLNARQQV-TCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSS---------DQLQDIEMECDDILVRIMDERNA  450 (711)
Q Consensus       381 ~tl~~h~~~V-~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~---------~~~~~l~~~~~d~~i~i~d~~~~  450 (711)
                      ..+.+|.+.| +|+.  .+|++||+|+.||.|++||+.+.+.......         .....++.++.++.|++||..++
T Consensus       112 ~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  189 (445)
T 2ovr_B          112 KVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG  189 (445)
T ss_dssp             EEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred             EEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC
Confidence            4578898875 5544  4689999999999999999987654322111         12346778889999999999999


Q ss_pred             eeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q psy14440        451 ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA  530 (711)
Q Consensus       451 ~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd  530 (711)
                      +....+.+|.+.|.+++|+  ++.|++|+.||+|++||+.+++.+..+.+|...|.+++|  ++.++++|+.||.|++||
T Consensus       190 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd  265 (445)
T 2ovr_B          190 ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWD  265 (445)
T ss_dssp             EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEE
T ss_pred             cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEE
Confidence            9999999999999999995  678999999999999999999999999999999999999  688999999999999999


Q ss_pred             CCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy14440        531 TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNV  610 (711)
Q Consensus       531 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I  610 (711)
                      +++++.+..+.+|...|.+++|  ++.++++|+.||+|++||+++++.+..+.+|...+.+++++  +++|++|+.||.|
T Consensus       266 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i  341 (445)
T 2ovr_B          266 PETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTV  341 (445)
T ss_dssp             GGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCE
T ss_pred             CCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeE
Confidence            9999999999999999999999  78999999999999999999999999999999999988875  7799999999999


Q ss_pred             EEEECCCCeEEEEeeC---CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceee
Q psy14440        611 HMWDLSNGHLLTLLTG---HTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVR  687 (711)
Q Consensus       611 ~iwDl~sg~~i~~l~~---h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  687 (711)
                      ++||+.+++.+..+.+   |...|++++|+  +++|++|+.||+|++||+.+..                       .+.
T Consensus       342 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~-----------------------~~~  396 (445)
T 2ovr_B          342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE-----------------------FIR  396 (445)
T ss_dssp             EEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC-----------------------EEE
T ss_pred             EEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc-----------------------eee
Confidence            9999999999999986   88899999995  7899999999999999987532                       122


Q ss_pred             ec-----ccCCcceEEEEEccCCeeee
Q psy14440        688 SY-----KTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       688 ~~-----~t~~~pV~~v~Fs~~n~lla  709 (711)
                      .+     ..+..+|.+++|++++.++|
T Consensus       397 ~~~~~~~~~~~~~v~~~~~s~~~~~la  423 (445)
T 2ovr_B          397 NLVTLESGGSGGVVWRIRASNTKLVCA  423 (445)
T ss_dssp             EEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred             eeeccccCCCCceEEEEEecCCEEEEE
Confidence            22     45678999999999999988

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.4e-36  Score=325.23  Aligned_cols=229  Identities=22%  Similarity=0.274  Sum_probs=200.2

Q ss_pred             eecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE----EecCCCCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy14440        456 LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV----YKGHGHPVWDIKFSPHGYYFASAGHDRMARLWAT  531 (711)
Q Consensus       456 l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~----~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~  531 (711)
                      ...|...|++++|++++ .|++|+.||+|+|||+.+++.+..    ..+|...|++++|+|+|++|++|+.|++|++||+
T Consensus        78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~  156 (344)
T 4gqb_B           78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL  156 (344)
T ss_dssp             EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            34467789999999985 788999999999999998765443    4589999999999999999999999999999999


Q ss_pred             CCCceeEEeecCCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEee--CCCCCeEEEEEec-CCCEEEEEeCC
Q psy14440        532 DSYHPLRLFVGHYSDVDCVQFHPNS-NYVATGSSDRTIRLWDCVTGSHVRLLT--GHKAPVYALSFSV-CGRFLASAGGD  607 (711)
Q Consensus       532 ~~~~~~~~~~~h~~~V~~v~~sp~~-~~latgs~Dg~I~iwD~~~~~~v~~~~--~h~~~I~~la~sp-dg~~Lasgs~D  607 (711)
                      ++++.+..+.+|...|.+++|++++ .+|++|+.|++|++||+++++.+..+.  .|...+++++|+| ++++|++|+.|
T Consensus       157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d  236 (344)
T 4gqb_B          157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN  236 (344)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred             CCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence            9999999999999999999999987 478999999999999999999988875  4566799999998 46789999999


Q ss_pred             CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCCCccCcccccccccccccccccccee
Q psy14440        608 GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDG-NILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLV  686 (711)
Q Consensus       608 g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg-~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  686 (711)
                      |.|+|||+++++.+..+.+|.+.|++++|+|+| ++|++|+.||+|+|||+...                       . +
T Consensus       237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-----------------------~-~  292 (344)
T 4gqb_B          237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS-----------------------E-L  292 (344)
T ss_dssp             SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC-----------------------E-E
T ss_pred             CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-----------------------c-E
Confidence            999999999999999999999999999999998 58999999999999998641                       1 2


Q ss_pred             eecccCCcceEEEEEccCCe-eee
Q psy14440        687 RSYKTKASPLLHLIFSRRNI-LLR  709 (711)
Q Consensus       687 ~~~~t~~~pV~~v~Fs~~n~-lla  709 (711)
                      ..+..|...|.+|+|++++. +||
T Consensus       293 ~~~~~H~~~V~~v~~sp~~~~lla  316 (344)
T 4gqb_B          293 FRSQAHRDFVRDATWSPLNHSLLT  316 (344)
T ss_dssp             EEECCCSSCEEEEEECSSSTTEEE
T ss_pred             EEEcCCCCCEEEEEEeCCCCeEEE
Confidence            23567899999999999875 555

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.3e-35  Score=351.25  Aligned_cols=281  Identities=23%  Similarity=0.347  Sum_probs=257.5

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------eeeeccCccccccccccCCcEEEEEecC
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-----------LKAMKSSDQLQDIEMECDDILVRIMDER  448 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-----------~~~~~~~~~~~~l~~~~~d~~i~i~d~~  448 (711)
                      ..++.+|.+.|+|++|||||++||+|+.||.|+||++.+++           +..+.++++...+++++.++.|++||..
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~   85 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            45788999999999999999999999999999999987653           3345566777889999999999999999


Q ss_pred             CCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCeE
Q psy14440        449 NAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW-RCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMA  526 (711)
Q Consensus       449 ~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~-~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i  526 (711)
                      +++....+.+|.+.|++++|++++++|++|+.||+|++||+.++ .....+.+|...|.+++|+| ++..|++++.||+|
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v  165 (814)
T 3mkq_A           86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (814)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence            99999999999999999999999999999999999999999886 77888999999999999999 88999999999999


Q ss_pred             EEEECCCCceeEEeecCC-CCeeEEEEcC--CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEE
Q psy14440        527 RLWATDSYHPLRLFVGHY-SDVDCVQFHP--NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~~h~-~~V~~v~~sp--~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Las  603 (711)
                      ++||+.++.....+..+. ..+.+++|+|  ++.+|++|+.||+|++||+.+++.+..+.+|...|.+++|+|+|++|++
T Consensus       166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  245 (814)
T 3mkq_A          166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS  245 (814)
T ss_dssp             EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            999999888877777655 8899999999  9999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCC
Q psy14440        604 AGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGN--ILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       604 gs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~--~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      |+.||.|++||+.+++.+..+..|...|++++|+++|.  ++++ +.|+.+.+|++....
T Consensus       246 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS-GFDNGFTVLSLGNDE  304 (814)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEE-EETTEEEEEECSCCS
T ss_pred             EeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEE-EeCCCEEEEEcCCCC
Confidence            99999999999999999999999999999999999987  4554 457789999987643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.1e-35  Score=371.13  Aligned_cols=334  Identities=21%  Similarity=0.306  Sum_probs=281.9

Q ss_pred             CceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------eeeeccCccccccccccCCcEEEE
Q psy14440        376 PSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-----------LKAMKSSDQLQDIEMECDDILVRI  444 (711)
Q Consensus       376 ps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-----------~~~~~~~~~~~~l~~~~~d~~i~i  444 (711)
                      .......+.+|.+.|+|++||+||++||+|+.||.|+||++.+.+           +..+.++++...+++++.++.|++
T Consensus       604 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v  683 (1249)
T 3sfz_A          604 KNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI  683 (1249)
T ss_dssp             SCCCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cccceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence            345566789999999999999999999999999999999997654           334556677788899999999999


Q ss_pred             EecCCCeeEEEeecccCCEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEEC
Q psy14440        445 MDERNAETTRTLVGHEGPVRKLSFSP--DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH  522 (711)
Q Consensus       445 ~d~~~~~~~~~l~~h~~~V~~l~fsp--dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~  522 (711)
                      ||..+++....+.+|.+.|.+++|++  ++.++++|+.||+|++||+.+++++..+.+|...|++++|+|++.++++|+.
T Consensus       684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  763 (1249)
T 3sfz_A          684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA  763 (1249)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred             EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence            99999999999999999999999999  5568999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEECCCCceeEEe-------------------------------------------------------ecCCCCe
Q psy14440        523 DRMARLWATDSYHPLRLF-------------------------------------------------------VGHYSDV  547 (711)
Q Consensus       523 Dg~i~lwd~~~~~~~~~~-------------------------------------------------------~~h~~~V  547 (711)
                      ||+|++||+.++.....+                                                       .+|...|
T Consensus       764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v  843 (1249)
T 3sfz_A          764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI  843 (1249)
T ss_dssp             SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred             CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence            999999998765433222                                                       1678889


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-----------
Q psy14440        548 DCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS-----------  616 (711)
Q Consensus       548 ~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~-----------  616 (711)
                      .+++|+|+++++++|+.||+|++||+.++..+..+.+|.+.|++++|+++|++|++++.||.|++||+.           
T Consensus       844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~  923 (1249)
T 3sfz_A          844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK  923 (1249)
T ss_dssp             CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Confidence            999999999999999999999999999999999999999999999999999999999999888888742           


Q ss_pred             --------------------------------------------------------------------CCeEEEEeeCCC
Q psy14440        617 --------------------------------------------------------------------NGHLLTLLTGHT  628 (711)
Q Consensus       617 --------------------------------------------------------------------sg~~i~~l~~h~  628 (711)
                                                                                          +++.+..+.+|.
T Consensus       924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~ 1003 (1249)
T 3sfz_A          924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK 1003 (1249)
T ss_dssp             EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS
T ss_pred             ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC
Confidence                                                                                234445566788


Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcccc------c-----------cccccccccccccceeeeccc
Q psy14440        629 DVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEV------N-----------LSHSADIKNSSLAYLVRSYKT  691 (711)
Q Consensus       629 ~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~------~-----------~~~~~~~~~~~~~~~l~~~~t  691 (711)
                      +.|++++|+++|++|++|+.||+|++||+.+..........      .           ......++.......+..+..
T Consensus      1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 1083 (1249)
T 3sfz_A         1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC 1083 (1249)
T ss_dssp             SCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC
T ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc
Confidence            99999999999999999999999999999874332111000      0           000111222334556677888


Q ss_pred             CCcceEEEEEccCCeeee
Q psy14440        692 KASPLLHLIFSRRNILLR  709 (711)
Q Consensus       692 ~~~pV~~v~Fs~~n~lla  709 (711)
                      |...|.+++|++++.+|+
T Consensus      1084 ~~~~v~~~~~s~d~~~l~ 1101 (1249)
T 3sfz_A         1084 HQGTVLSCAISSDATKFS 1101 (1249)
T ss_dssp             CSSCCCCEEECSSSSSCE
T ss_pred             cCCcEEEEEECCCCCEEE
Confidence            999999999999999887

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.3e-35  Score=321.96  Aligned_cols=272  Identities=11%  Similarity=0.124  Sum_probs=218.7

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCC-------eEEEEeCCCCcee---------------------eeccC---------c
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSES-------YIKLWSLVPQKLK---------------------AMKSS---------D  428 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg-------~I~vWdl~~~~~~---------------------~~~~~---------~  428 (711)
                      ..-+|+|++|++||++||+|+.+.       .|++|++......                     .+...         .
T Consensus        13 ~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~   92 (365)
T 4h5i_A           13 VGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNE   92 (365)
T ss_dssp             CSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCC
T ss_pred             CCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECC
Confidence            345799999999999999998654       5999998654311                     00000         1


Q ss_pred             cccccccccCCcEEEEEecCCCeeEE----Ee-----ecccCCEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCeEEEE
Q psy14440        429 QLQDIEMECDDILVRIMDERNAETTR----TL-----VGHEGPVRKLSFSPDRSLLLSC--SQDNTIRLWSLLLWRCLVV  497 (711)
Q Consensus       429 ~~~~l~~~~~d~~i~i~d~~~~~~~~----~l-----~~h~~~V~~l~fspdg~~L~s~--s~Dg~V~iwdl~t~~~~~~  497 (711)
                      ....+..+..++.+++|+........    ..     ..+...+.+++|||||++|+++  +.|++|+|||+.+++++..
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~  172 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE  172 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred             CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence            11223445567889999865433211    11     2344568999999999998754  4789999999999999988


Q ss_pred             EecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeE--EeecCCCCeeEEEEcCCCCEEEEEEcCC----cEEEE
Q psy14440        498 YKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLR--LFVGHYSDVDCVQFHPNSNYVATGSSDR----TIRLW  571 (711)
Q Consensus       498 ~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~latgs~Dg----~I~iw  571 (711)
                      +. |...|++++|+|+|+++++++.+ .+++|+..++..+.  ...+|...|.+++|+|++.++++++.|+    ++++|
T Consensus       173 ~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~  250 (365)
T 4h5i_A          173 IE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI  250 (365)
T ss_dssp             EE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred             eC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence            86 77889999999999999999855 56666666666543  3456888999999999999999999887    68899


Q ss_pred             ECCCCcE----EEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEe-eCCCCCEEEEEEeCCCCEEEEE
Q psy14440        572 DCVTGSH----VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLL-TGHTDVVRALCFSRDGNILASS  646 (711)
Q Consensus       572 D~~~~~~----v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l-~~h~~~V~sl~fspdg~~Lasg  646 (711)
                      |+..+..    .+.+.+|...|++++|+|||++||+|+.||+|+|||+.+++++..+ .+|.+.|++++|+|||++||||
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~  330 (365)
T 4h5i_A          251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV  330 (365)
T ss_dssp             EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred             ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence            9877654    3567789999999999999999999999999999999999999875 7999999999999999999999


Q ss_pred             eCCCcEEEEeCCC
Q psy14440        647 GQDCSVKLWDFAK  659 (711)
Q Consensus       647 s~Dg~V~iWdl~~  659 (711)
                      |.|++|||||+..
T Consensus       331 S~D~tvrvw~ip~  343 (365)
T 4h5i_A          331 SAANTIHIIKLPL  343 (365)
T ss_dssp             ETTSEEEEEECCT
T ss_pred             eCCCeEEEEEcCC
Confidence            9999999999964

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-36  Score=327.05  Aligned_cols=271  Identities=18%  Similarity=0.224  Sum_probs=248.9

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc----------eeeeccCccccccccccCCcEEEEEecCCCeeEEE
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK----------LKAMKSSDQLQDIEMECDDILVRIMDERNAETTRT  455 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~----------~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  455 (711)
                      |.+.|++++|++++++||+|+.||.|++|+..+..          +..+.++.+...++.++.++.+++||..+++....
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence            67899999999999999999999999999965443          33345556677788888999999999999999999


Q ss_pred             eecccCC---------------EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEE
Q psy14440        456 LVGHEGP---------------VRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASA  520 (711)
Q Consensus       456 l~~h~~~---------------V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sg  520 (711)
                      +..|...               |.+++|++++ .+++++.||.|++||+.+++.+..+.+|...|.+++|++++.+|+++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  265 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA  265 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence            9988887               9999999875 58899999999999999999999999999999999999999999999


Q ss_pred             ECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCE
Q psy14440        521 GHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRF  600 (711)
Q Consensus       521 s~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~  600 (711)
                      +.||.|++||+++++.+..+.+|...|.+++|+|++ ++++++.||.|++||+++++.+..+..|...|.+++|+++|++
T Consensus       266 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~  344 (425)
T 1r5m_A          266 SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQK  344 (425)
T ss_dssp             ETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSE
T ss_pred             cCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCE
Confidence            999999999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCe--------------------EEEEeeCCCC--CEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        601 LASAGGDGNVHMWDLSNGH--------------------LLTLLTGHTD--VVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       601 Lasgs~Dg~I~iwDl~sg~--------------------~i~~l~~h~~--~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      |++|+.||.|++||+.+++                    .+..+.+|..  .|++++|++++++|++|+.||.|++||+.
T Consensus       345 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          345 YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            9999999999999999888                    8999999976  99999999999999999999999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.1e-35  Score=318.78  Aligned_cols=247  Identities=24%  Similarity=0.442  Sum_probs=212.6

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      .+..++.+|...|++++|++++.+|++|+.|++|++||+.+                               ++....+.
T Consensus        67 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~-------------------------------~~~~~~~~  115 (343)
T 2xzm_R           67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT-------------------------------GTTYKRFV  115 (343)
T ss_dssp             EEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS-------------------------------SCEEEEEE
T ss_pred             cccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC-------------------------------CcEEEEEc
Confidence            34567889999999999999999999999999999999843                               44566788


Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe---cCCCCEEEEEEcCCC----------CEEEEEECCC
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK---GHGHPVWDIKFSPHG----------YYFASAGHDR  524 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~---~h~~~V~~v~~sp~g----------~~l~sgs~Dg  524 (711)
                      +|.+.|++++|+|++++|++|+.|++|++||+.. .......   +|...|.+++|+|++          .+|++++.||
T Consensus       116 ~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  194 (343)
T 2xzm_R          116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG  194 (343)
T ss_dssp             CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS
T ss_pred             CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC
Confidence            9999999999999999999999999999999984 3333333   688999999999986          7999999999


Q ss_pred             eEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-CcEEEEeeCCCCCeEEEEEecCCCEEEE
Q psy14440        525 MARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT-GSHVRLLTGHKAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       525 ~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~-~~~v~~~~~h~~~I~~la~spdg~~Las  603 (711)
                      +|++||. .......+.+|...|.+++|+|++++|++|+.||+|++||+.+ +.....+. +...|.+++|+|++.++++
T Consensus       195 ~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~  272 (343)
T 2xzm_R          195 RLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAV  272 (343)
T ss_dssp             EEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEE
T ss_pred             EEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEE
Confidence            9999994 4567778889999999999999999999999999999999954 44444443 5567999999999998875


Q ss_pred             EeCCCcEEEEECCCCeEEE--Eee-----------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        604 AGGDGNVHMWDLSNGHLLT--LLT-----------GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       604 gs~Dg~I~iwDl~sg~~i~--~l~-----------~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      | .|+.|++||+.+++...  .+.           +|...|++++|+|+|++|++|+.||+|++|++.+
T Consensus       273 ~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          273 G-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             E-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             E-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence            5 57889999998876433  443           6888999999999999999999999999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9.4e-35  Score=308.66  Aligned_cols=273  Identities=21%  Similarity=0.314  Sum_probs=233.0

Q ss_pred             ceeeeccCcc-ccccccccCCcEEEEEecCC-----CeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q psy14440        420 KLKAMKSSDQ-LQDIEMECDDILVRIMDERN-----AETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR  493 (711)
Q Consensus       420 ~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~-----~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~  493 (711)
                      .+..+..+.. ...++.++.|+.|++|+...     +.....+.+|...|.+++|++++++|++|+.|++|++||+.+++
T Consensus        19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~   98 (319)
T 3frx_A           19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE   98 (319)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence            3444555543 35788899999999998753     34567899999999999999999999999999999999999999


Q ss_pred             EEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCC------CCEEEEEEcCCc
Q psy14440        494 CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN------SNYVATGSSDRT  567 (711)
Q Consensus       494 ~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~------~~~latgs~Dg~  567 (711)
                      .+..+.+|...|.+++|++++.+|++|+.|++|++||++ +..+..+.+|...|.+++|+|+      +.+|++|+.|++
T Consensus        99 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~  177 (319)
T 3frx_A           99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM  177 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSC
T ss_pred             eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCE
Confidence            999999999999999999999999999999999999997 4677888899999999999985      458999999999


Q ss_pred             EEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEe
Q psy14440        568 IRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSG  647 (711)
Q Consensus       568 I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs  647 (711)
                      |++||+++++....+.+|...|++++|+|+|++|++|+.||.|+|||+.+++.+..+..+ ..|.+++|+|++.+|++++
T Consensus       178 i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~  256 (319)
T 3frx_A          178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAAT  256 (319)
T ss_dssp             EEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEE
T ss_pred             EEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEc
Confidence            999999999999999999999999999999999999999999999999999999988865 5799999999999999887


Q ss_pred             CCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee-C
Q psy14440        648 QDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR-G  710 (711)
Q Consensus       648 ~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-G  710 (711)
                      . +.+++|++........   .            ..........+...|.+++|+++|.+|+ |
T Consensus       257 ~-~~i~v~~~~~~~~~~~---~------------~~~~~~~~~~~~~~v~~~~~spdg~~l~sg  304 (319)
T 3frx_A          257 A-TGIKVFSLDPQYLVDD---L------------RPEFAGYSKAAEPHAVSLAWSADGQTLFAG  304 (319)
T ss_dssp             T-TEEEEEEETTEEEEEE---E------------CCCCTTCCGGGCCCEEEEEECTTSSEEEEE
T ss_pred             C-CCcEEEEeCcCeeeec---c------------CccccccccCcCcceeEEEECCCCCEEEEe
Confidence            5 4699999864211000   0            0000011233456799999999999998 5

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9.1e-35  Score=323.57  Aligned_cols=300  Identities=24%  Similarity=0.373  Sum_probs=257.4

Q ss_pred             eEEEEEecCCCce-EEEEECCCCCEEEEEeCCCeEEEEeCCCCcee-----------eeccCccccccccccCCcEEEEE
Q psy14440        378 IACYTLLNARQQV-TCAEISEDVSILAVGFSESYIKLWSLVPQKLK-----------AMKSSDQLQDIEMECDDILVRIM  445 (711)
Q Consensus       378 ~~~~tl~~h~~~V-~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~-----------~~~~~~~~~~l~~~~~d~~i~i~  445 (711)
                      .+..++.+|.+.| +|+.+  ++++|++|+.||.|++||+.+.+..           .+....+. .++.++.|+.|++|
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw  188 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW  188 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence            3566888998885 66666  5679999999999999998775532           23333333 77888999999999


Q ss_pred             ecCCCeeEEEeecccCCEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCe-----------------------EEEEEec
Q psy14440        446 DERNAETTRTLVGHEGPVRKLSFS--PDRSLLLSCSQDNTIRLWSLLLWR-----------------------CLVVYKG  500 (711)
Q Consensus       446 d~~~~~~~~~l~~h~~~V~~l~fs--pdg~~L~s~s~Dg~V~iwdl~t~~-----------------------~~~~~~~  500 (711)
                      |..+++....+.+|.+.|.+++|+  +++.+|++|+.||+|++||+.+..                       .+..+.+
T Consensus       189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (464)
T 3v7d_B          189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  268 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred             ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence            999999999999999999999998  578899999999999999998765                       3567788


Q ss_pred             CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE
Q psy14440        501 HGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR  580 (711)
Q Consensus       501 h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~  580 (711)
                      |...|.++  ++++.++++|+.||+|++||+++++.+..+.+|...|.+++|+++++++++|+.||+|++||+++++++.
T Consensus       269 ~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  346 (464)
T 3v7d_B          269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY  346 (464)
T ss_dssp             CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence            99999887  5678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        581 LLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       581 ~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      .+.+|...|.+++|+  +++|++|+.||.|++||+.++....... |...+..++|++++++|++|+ ||.|++||+.+.
T Consensus       347 ~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g  422 (464)
T 3v7d_B          347 TLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG  422 (464)
T ss_dssp             EECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             EEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence            999999999999997  6899999999999999999988766654 566778899999999999998 999999999763


Q ss_pred             CCccCccccccccccccccccccceeee-cccCCcceEEEEEccCCeeee
Q psy14440        661 SDEVGTEEVNLSHSADIKNSSLAYLVRS-YKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      .                       ++.. +..+..+|.+|+|+.+.++.+
T Consensus       423 ~-----------------------~~~~~~~~~~~~v~~v~~~~~~l~~~  449 (464)
T 3v7d_B          423 K-----------------------LVHANILKDADQIWSVNFKGKTLVAA  449 (464)
T ss_dssp             C-----------------------EEESCTTTTCSEEEEEEEETTEEEEE
T ss_pred             c-----------------------EEehhhccCCCcEEEEEecCCEEEEE
Confidence            2                       2222 445678899999985444443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=358.90  Aligned_cols=198  Identities=13%  Similarity=0.116  Sum_probs=171.5

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce----------eeeccCccccccccccCCcEEEEEecC
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKL----------KAMKSSDQLQDIEMECDDILVRIMDER  448 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~----------~~~~~~~~~~~l~~~~~d~~i~i~d~~  448 (711)
                      ......+|.+.|+|++|+|++++||+|+.||.|+||+..+.+.          ..+.++. ...++.++.|+.|++||..
T Consensus         9 ~~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~   87 (902)
T 2oaj_A            9 AETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY   87 (902)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred             ccccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence            3445678999999999999999999999999999999876442          3344444 4468888899999999999


Q ss_pred             CCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE-----------EEEecCCCCEEEEEEcCC-CCE
Q psy14440        449 NAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCL-----------VVYKGHGHPVWDIKFSPH-GYY  516 (711)
Q Consensus       449 ~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~-----------~~~~~h~~~V~~v~~sp~-g~~  516 (711)
                      +++.+..+. |.+.|++++|+|++++|++|+.||+|++||+.++++.           ..+.+|...|++++|+|+ +..
T Consensus        88 ~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~  166 (902)
T 2oaj_A           88 SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT  166 (902)
T ss_dssp             TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred             CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCE
Confidence            998888886 7789999999999999999999999999999988764           123568999999999996 579


Q ss_pred             EEEEECCCeEEEEECCCCceeEEeecC------------------CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE
Q psy14440        517 FASAGHDRMARLWATDSYHPLRLFVGH------------------YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH  578 (711)
Q Consensus       517 l~sgs~Dg~i~lwd~~~~~~~~~~~~h------------------~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~  578 (711)
                      +++|+.||+| +||+++++.++.+.+|                  ...|.+++|+|+|++|++|+.||+|++||++++++
T Consensus       167 l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          167 VLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             EEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred             EEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence            9999999999 9999999988888766                  47799999999999999999999999999977665


Q ss_pred             E
Q psy14440        579 V  579 (711)
Q Consensus       579 v  579 (711)
                      +
T Consensus       246 ~  246 (902)
T 2oaj_A          246 I  246 (902)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-35  Score=312.25  Aligned_cols=267  Identities=22%  Similarity=0.408  Sum_probs=216.0

Q ss_pred             ceeeeccCccccccccccCCcEEEEEecCCC--eeEEEe-ec-ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-----
Q psy14440        420 KLKAMKSSDQLQDIEMECDDILVRIMDERNA--ETTRTL-VG-HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL-----  490 (711)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~l-~~-h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~-----  490 (711)
                      .+..+..+.+  .++.++.|+.|++|+...+  .....+ .+ |.+.|++++|+|++++|++|+.|++|++||+.     
T Consensus        16 ~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~   93 (330)
T 2hes_X           16 KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR   93 (330)
T ss_dssp             CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC------
T ss_pred             ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc
Confidence            3344444433  6788899999999998764  445555 44 99999999999999999999999999999984     


Q ss_pred             --CCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC----CceeEEeecCCCCeeEEEEcCCCCEEEEEEc
Q psy14440        491 --LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS----YHPLRLFVGHYSDVDCVQFHPNSNYVATGSS  564 (711)
Q Consensus       491 --t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~----~~~~~~~~~h~~~V~~v~~sp~~~~latgs~  564 (711)
                        ..+.+..+.+|...|++++|+|+|++|++|+.|++|++||++.    .+.+..+.+|...|.+++|+|++++|++|+.
T Consensus        94 ~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~  173 (330)
T 2hes_X           94 TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY  173 (330)
T ss_dssp             -CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred             cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC
Confidence              3467788899999999999999999999999999999999953    2467788899999999999999999999999


Q ss_pred             CCcEEEEECCCC--cEEEEeeCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCC--------eEEEEeeC-CCCCE
Q psy14440        565 DRTIRLWDCVTG--SHVRLLTGHKAPVYALSFSVC--GRFLASAGGDGNVHMWDLSNG--------HLLTLLTG-HTDVV  631 (711)
Q Consensus       565 Dg~I~iwD~~~~--~~v~~~~~h~~~I~~la~spd--g~~Lasgs~Dg~I~iwDl~sg--------~~i~~l~~-h~~~V  631 (711)
                      |++|++||..++  +++..+.+|.+.|.+++|+++  +.+|++|+.||+|++||+.++        .....+.+ |...|
T Consensus       174 D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v  253 (330)
T 2hes_X          174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQV  253 (330)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCE
T ss_pred             CCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccce
Confidence            999999999876  678899999999999999998  779999999999999998764        45555655 89999


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCc-ceEEEEEcc--CCeee
Q psy14440        632 RALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKAS-PLLHLIFSR--RNILL  708 (711)
Q Consensus       632 ~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~-pV~~v~Fs~--~n~ll  708 (711)
                      ++++|++++ +|++|+.||+|+|||+....                    .......+..|.. .|.+++|++  ++.+|
T Consensus       254 ~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~--------------------~~~~~~~~~~h~~~~v~~v~~~~~~~~~~l  312 (330)
T 2hes_X          254 YNVAWGFNG-LIASVGADGVLAVYEEVDGE--------------------WKVFAKRALCHGVYEINVVKWLELNGKTIL  312 (330)
T ss_dssp             EEEEECTTS-CEEEEETTSCEEEEEEETTE--------------------EEEEEEESCTTTTSCEEEEEEC-----CCE
T ss_pred             EEEEEcCCC-EEEEEeCCCEEEEEEcCCCc--------------------eEEEeccccccccceEEEEEEecCCCceEE
Confidence            999999654 89999999999999975311                    0111122345665 899999999  67777


Q ss_pred             e
Q psy14440        709 R  709 (711)
Q Consensus       709 a  709 (711)
                      |
T Consensus       313 a  313 (330)
T 2hes_X          313 A  313 (330)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-37  Score=346.39  Aligned_cols=313  Identities=12%  Similarity=0.024  Sum_probs=233.1

Q ss_pred             cCCCceEEEEECCCC---------CEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCee---
Q psy14440        385 NARQQVTCAEISEDV---------SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAET---  452 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg---------~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---  452 (711)
                      .+.+.|.|++|+|++         ++||+|+.++..            ...+++...++.++.|+.|++|+..+++.   
T Consensus       131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~  198 (524)
T 2j04_B          131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV  198 (524)
T ss_dssp             ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------------------CEEEEEEEEETTTCCEE
T ss_pred             ECCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------CccchhhhhhccCCCCceEEEEEccCCCCCce
Confidence            368899999999987         899999876531            01235566678888999999999876653   


Q ss_pred             -EEEeecccCCEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCeE-----------EEEEecCCCCEEEEEEcCCC
Q psy14440        453 -TRTLVGHEGPVRKLSFSPD------RSLLLSCSQDNTIRLWSLLLWRC-----------LVVYKGHGHPVWDIKFSPHG  514 (711)
Q Consensus       453 -~~~l~~h~~~V~~l~fspd------g~~L~s~s~Dg~V~iwdl~t~~~-----------~~~~~~h~~~V~~v~~sp~g  514 (711)
                       ...+.+|.+.|.+++|+|+      +.+|++|+.||+|++||+.++..           ...+.+|...|++++|++++
T Consensus       199 ~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~  278 (524)
T 2j04_B          199 KVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT  278 (524)
T ss_dssp             EEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS
T ss_pred             EEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC
Confidence             2446778899999999996      57999999999999999976532           24678899999999999864


Q ss_pred             CEEEEEECCCeEEEEECCCC-ceeEEeecCCCCeeEE--EEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEeeCCCC--C
Q psy14440        515 YYFASAGHDRMARLWATDSY-HPLRLFVGHYSDVDCV--QFHPNS-NYVATGSSDRTIRLWDCVTGSHVRLLTGHKA--P  588 (711)
Q Consensus       515 ~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~h~~~V~~v--~~sp~~-~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~--~  588 (711)
                       .|++|+.||+|++||++++ .+...+.+|...|.+|  +|++++ ++||+|+.|++|+|||+++++++..+.+|..  .
T Consensus       279 -~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~  357 (524)
T 2j04_B          279 -TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN  357 (524)
T ss_dssp             -EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS
T ss_pred             -eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCc
Confidence             8999999999999999976 4556788999999999  567887 8999999999999999999988877777753  5


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcc-
Q psy14440        589 VYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTE-  667 (711)
Q Consensus       589 I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~-  667 (711)
                      |.+++|+|+++.|++++.|++|++||++++.++..+.+|.+.|++++|+|+|++|++|+.||+|++||+....-..... 
T Consensus       358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~  437 (524)
T 2j04_B          358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNS  437 (524)
T ss_dssp             CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC---
T ss_pred             ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccC
Confidence            8899999999999999999999999999999888899999999999999999999999999999999986531111000 


Q ss_pred             -------cc-cccccccc-----------cc-ccccceeeecccCCcceEEEEEccCC---eeee-C
Q psy14440        668 -------EV-NLSHSADI-----------KN-SSLAYLVRSYKTKASPLLHLIFSRRN---ILLR-G  710 (711)
Q Consensus       668 -------~~-~~~~~~~~-----------~~-~~~~~~l~~~~t~~~pV~~v~Fs~~n---~lla-G  710 (711)
                             .+ ....+++.           .. ...+.++..+.+|..+|.+|+|++++   .++| |
T Consensus       438 ~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg  504 (524)
T 2j04_B          438 SATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFS  504 (524)
T ss_dssp             ---CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred             ccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence                   00 11111110           00 01245667788999999999999995   4787 5

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1e-34  Score=317.53  Aligned_cols=267  Identities=24%  Similarity=0.443  Sum_probs=233.7

Q ss_pred             CCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccC------------------CEEEEEEcCCCCEEEEEe
Q psy14440        418 PQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEG------------------PVRKLSFSPDRSLLLSCS  479 (711)
Q Consensus       418 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~------------------~V~~l~fspdg~~L~s~s  479 (711)
                      ...+..+.++++...++.++ ++.+++|+..+++....+.+|..                  .|.+++|+++|++|++|+
T Consensus        64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~  142 (393)
T 1erj_A           64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA  142 (393)
T ss_dssp             SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred             CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence            34556677777878787765 67899999999998888876643                  399999999999999999


Q ss_pred             CCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcC-CCCE
Q psy14440        480 QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP-NSNY  558 (711)
Q Consensus       480 ~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~  558 (711)
                      .|++|++||+.+++.+..+.+|...|++++|+|++.+|++|+.|++|++||+++++....+. +...+.+++|+| ++++
T Consensus       143 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~  221 (393)
T 1erj_A          143 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKY  221 (393)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCE
T ss_pred             CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCE
Confidence            99999999999999999999999999999999999999999999999999999998877765 567799999999 8999


Q ss_pred             EEEEEcCCcEEEEECCCCcEEEEe-------eCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC------------Ce
Q psy14440        559 VATGSSDRTIRLWDCVTGSHVRLL-------TGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN------------GH  619 (711)
Q Consensus       559 latgs~Dg~I~iwD~~~~~~v~~~-------~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s------------g~  619 (711)
                      |++|+.||+|++||++++..+..+       .+|...|++++|+++|++|++|+.||.|++||+.+            +.
T Consensus       222 l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~  301 (393)
T 1erj_A          222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT  301 (393)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C
T ss_pred             EEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCc
Confidence            999999999999999999988776       57999999999999999999999999999999975            34


Q ss_pred             EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEE
Q psy14440        620 LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHL  699 (711)
Q Consensus       620 ~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v  699 (711)
                      +...+.+|...|.+++|++++.+|++|+.||+|++||+.+.                       ..+..+..|...|.++
T Consensus       302 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-----------------------~~~~~l~~h~~~v~~v  358 (393)
T 1erj_A          302 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-----------------------NPLLMLQGHRNSVISV  358 (393)
T ss_dssp             EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-----------------------CEEEEEECCSSCEEEE
T ss_pred             ceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-----------------------eEEEEECCCCCCEEEE
Confidence            56678899999999999999999999999999999998642                       2355678899999999


Q ss_pred             EEcc------CCeeee
Q psy14440        700 IFSR------RNILLR  709 (711)
Q Consensus       700 ~Fs~------~n~lla  709 (711)
                      +|++      ++.+||
T Consensus       359 ~~~~~~~~~p~~~~l~  374 (393)
T 1erj_A          359 AVANGSSLGPEYNVFA  374 (393)
T ss_dssp             EECSSCTTCTTCEEEE
T ss_pred             EecCCcCcCCCCCEEE
Confidence            9986      567776

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.3e-36  Score=326.26  Aligned_cols=275  Identities=21%  Similarity=0.318  Sum_probs=240.2

Q ss_pred             CCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---
Q psy14440        417 VPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR---  493 (711)
Q Consensus       417 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~---  493 (711)
                      ....+..+.++++...++.++.|+.|++||..+++....+.+|...|.+++|+|++++|++|+.|++|++||+.+..   
T Consensus        65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~  144 (380)
T 3iz6_a           65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD  144 (380)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC
T ss_pred             cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc
Confidence            44556667777888889999999999999999999999999999999999999999999999999999999986432   


Q ss_pred             ----EEEEEecCCCCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCceeEEe-----ecCCCCeeEEEEcC-CCCEEEEE
Q psy14440        494 ----CLVVYKGHGHPVWDIKFSPH-GYYFASAGHDRMARLWATDSYHPLRLF-----VGHYSDVDCVQFHP-NSNYVATG  562 (711)
Q Consensus       494 ----~~~~~~~h~~~V~~v~~sp~-g~~l~sgs~Dg~i~lwd~~~~~~~~~~-----~~h~~~V~~v~~sp-~~~~latg  562 (711)
                          ....+.+|...|.++.|+|+ +..|++|+.|++|++||+.+++.+..+     .+|...|.+++|++ ++++|++|
T Consensus       145 ~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg  224 (380)
T 3iz6_a          145 GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG  224 (380)
T ss_dssp             CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE
T ss_pred             CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEE
Confidence                34567899999999999996 457999999999999999999988877     67999999999987 88999999


Q ss_pred             EcCCcEEEEECC-CCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCC-------CCEEEE
Q psy14440        563 SSDRTIRLWDCV-TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHT-------DVVRAL  634 (711)
Q Consensus       563 s~Dg~I~iwD~~-~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~-------~~V~sl  634 (711)
                      +.||+|++||++ .+..++.+.+|.+.|++++|+|+|++|++|+.||+|++||+++++.+..+..+.       ..|+++
T Consensus       225 s~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  304 (380)
T 3iz6_a          225 SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV  304 (380)
T ss_dssp             ETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE
T ss_pred             ECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEE
Confidence            999999999998 557889999999999999999999999999999999999999999998887553       248999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee-C
Q psy14440        635 CFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR-G  710 (711)
Q Consensus       635 ~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-G  710 (711)
                      +|+++|++|++|+.||.|++||+.......                   .+-.....|...|.+++|++++.+|| |
T Consensus       305 ~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~-------------------~~~~~~~~h~~~v~~l~~s~dg~~l~sg  362 (380)
T 3iz6_a          305 AFSISGRLLFAGYSNGDCYVWDTLLAEMVL-------------------NLGTLQNSHEGRISCLGLSSDGSALCTG  362 (380)
T ss_dssp             EECSSSSEEEEECTTSCEEEEETTTCCEEE-------------------EECCSCSSCCCCCCEEEECSSSSEEEEE
T ss_pred             EECCCCCEEEEEECCCCEEEEECCCCceEE-------------------EEecccCCCCCceEEEEECCCCCEEEEe
Confidence            999999999999999999999986422100                   00011256888999999999999998 5

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.7e-36  Score=322.53  Aligned_cols=293  Identities=16%  Similarity=0.243  Sum_probs=221.9

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCC-------CceeeeccCccccccccccC------CcEEEEEecCCCee----E
Q psy14440        391 TCAEISEDVSILAVGFSESYIKLWSLVP-------QKLKAMKSSDQLQDIEMECD------DILVRIMDERNAET----T  453 (711)
Q Consensus       391 ~~l~fs~dg~~LatG~~dg~I~vWdl~~-------~~~~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~----~  453 (711)
                      ..+.+..++.++.+ ..+.....|++..       ..+..+.+++++..++.++.      ++.+++|+..++..    .
T Consensus         9 sg~d~g~~~~~~~~-~g~~~~~~w~~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~   87 (357)
T 4g56_B            9 SGVDLGTENLYFQS-NGSSKGSAWGRPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLC   87 (357)
T ss_dssp             --------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGC
T ss_pred             cCCCCCccceEEec-CCCccccccCCCCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEe
Confidence            34455666655444 4467789999743       34677889999999988876      78899998766543    3


Q ss_pred             EEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE----EEecCCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q psy14440        454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV----VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLW  529 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~----~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lw  529 (711)
                      ....+|...|++++|++++. +++++.||+|+|||+.+++...    ...+|...|++++|+|++++|++|+.|++|++|
T Consensus        88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw  166 (357)
T 4g56_B           88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW  166 (357)
T ss_dssp             SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            34567899999999999985 5677889999999998876543    345799999999999999999999999999999


Q ss_pred             ECCCCceeEEeecCCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEEEee--CCCCCeEEEEEecC-CCEEEEEe
Q psy14440        530 ATDSYHPLRLFVGHYSDVDCVQFHPNSN-YVATGSSDRTIRLWDCVTGSHVRLLT--GHKAPVYALSFSVC-GRFLASAG  605 (711)
Q Consensus       530 d~~~~~~~~~~~~h~~~V~~v~~sp~~~-~latgs~Dg~I~iwD~~~~~~v~~~~--~h~~~I~~la~spd-g~~Lasgs  605 (711)
                      |+++++.+..+.+|...|.+++|++++. ++++++.||+|++||+++++.+..+.  .|...+++++|+|+ +.+|++|+
T Consensus       167 d~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~  246 (357)
T 4g56_B          167 DLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD  246 (357)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee
Confidence            9999999999999999999999999874 78999999999999999998776554  56788999999997 56899999


Q ss_pred             CCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccc
Q psy14440        606 GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDG-NILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAY  684 (711)
Q Consensus       606 ~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg-~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (711)
                      .|+.|++||+++++.+..+.+|...|++++|++++ ++|++|+.||+|+|||+...                       .
T Consensus       247 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~-----------------------~  303 (357)
T 4g56_B          247 ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS-----------------------E  303 (357)
T ss_dssp             SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC-----------------------E
T ss_pred             cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC-----------------------c
Confidence            99999999999999999999999999999999987 58999999999999998641                       1


Q ss_pred             eeeecccCCcceEEEEEcc-CCeeee
Q psy14440        685 LVRSYKTKASPLLHLIFSR-RNILLR  709 (711)
Q Consensus       685 ~l~~~~t~~~pV~~v~Fs~-~n~lla  709 (711)
                      ++. ...|...|.+|+|+| ++.+||
T Consensus       304 ~~~-~~~H~~~V~~vafsP~d~~~l~  328 (357)
T 4g56_B          304 VFR-DLSHRDFVTGVAWSPLDHSKFT  328 (357)
T ss_dssp             EEE-ECCCSSCEEEEEECSSSTTEEE
T ss_pred             EeE-ECCCCCCEEEEEEeCCCCCEEE
Confidence            222 336888999999998 777777

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=8.9e-36  Score=328.90  Aligned_cols=303  Identities=17%  Similarity=0.251  Sum_probs=232.3

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc-----
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE-----  460 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-----  460 (711)
                      +.+.|+|++|+++|++||+|+.||.|+||++.+.......                    .....+....+.+|.     
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~--------------------~~~~~~~~~~~~~h~~~~~~   86 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH--------------------SRGEYNVYSTFQSHEPEFDY   86 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC--------------------CCCCEEEEEEEECCCCEEEG
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc--------------------cccceeEecccccccccccc
Confidence            4689999999999999999999999999998754321100                    001223456778898     


Q ss_pred             -------CCEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeEE------------------------------------
Q psy14440        461 -------GPVRKLSFSPDR--SLLLSCSQDNTIRLWSLLLWRCL------------------------------------  495 (711)
Q Consensus       461 -------~~V~~l~fspdg--~~L~s~s~Dg~V~iwdl~t~~~~------------------------------------  495 (711)
                             +.|++++|++++  ..|++++.||+|++||+.++...                                    
T Consensus        87 ~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  166 (447)
T 3dw8_B           87 LKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA  166 (447)
T ss_dssp             GGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE
T ss_pred             cccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec
Confidence                   889999999998  79999999999999999764432                                    


Q ss_pred             ---EE-EecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC-CceeE-------EeecCCCCeeEEEEcCCC-CEEEEE
Q psy14440        496 ---VV-YKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS-YHPLR-------LFVGHYSDVDCVQFHPNS-NYVATG  562 (711)
Q Consensus       496 ---~~-~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~-~~~~~-------~~~~h~~~V~~v~~sp~~-~~latg  562 (711)
                         .. ..+|...|++++|++++++|++| .|++|++||+++ +..+.       .+.+|...|.+++|+|++ ++|++|
T Consensus       167 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  245 (447)
T 3dw8_B          167 SPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS  245 (447)
T ss_dssp             EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred             cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE
Confidence               12 36799999999999999999998 799999999984 44444       255899999999999998 999999


Q ss_pred             EcCCcEEEEECCCCcE----EEEeeCCCC------------CeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeEEEEee
Q psy14440        563 SSDRTIRLWDCVTGSH----VRLLTGHKA------------PVYALSFSVCGRFLASAGGDGNVHMWDLSN-GHLLTLLT  625 (711)
Q Consensus       563 s~Dg~I~iwD~~~~~~----v~~~~~h~~------------~I~~la~spdg~~Lasgs~Dg~I~iwDl~s-g~~i~~l~  625 (711)
                      +.||+|++||+++++.    +..+.+|..            .|++++|+|+|++|++++. |.|+|||+++ ++.+..+.
T Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~  324 (447)
T 3dw8_B          246 SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ  324 (447)
T ss_dssp             ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE
T ss_pred             eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee
Confidence            9999999999999987    788888876            8999999999999999999 9999999997 88888888


Q ss_pred             CCCCC---------------EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccc------cc---ccc
Q psy14440        626 GHTDV---------------VRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSAD------IK---NSS  681 (711)
Q Consensus       626 ~h~~~---------------V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~------~~---~~~  681 (711)
                      +|...               +..++|+++|++|++|+.||.|+|||+.+.....-...........      +.   ...
T Consensus       325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (447)
T 3dw8_B          325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRK  404 (447)
T ss_dssp             SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCC
T ss_pred             ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcc
Confidence            88632               3349999999999999999999999998754321000000000000      00   000


Q ss_pred             ccceeeecccCCcceEEEEEccCCeeee-C
Q psy14440        682 LAYLVRSYKTKASPLLHLIFSRRNILLR-G  710 (711)
Q Consensus       682 ~~~~l~~~~t~~~pV~~v~Fs~~n~lla-G  710 (711)
                      ..............|.+++|+|++.+|| |
T Consensus       405 ~~~~~~~~~~~~~~i~~~~~~p~~~~la~~  434 (447)
T 3dw8_B          405 KDEISVDSLDFNKKILHTAWHPKENIIAVA  434 (447)
T ss_dssp             TTCEEGGGCCTTSCCCEEEECSSSSEEEEE
T ss_pred             cccccccccccCCceeEEEECCCCCEEEEE
Confidence            0001111122356899999999999998 5

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-36  Score=331.21  Aligned_cols=276  Identities=14%  Similarity=0.180  Sum_probs=242.3

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCC----C-c----------eeeeccCcc-ccccccccCCcEEEEEec
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFSESYIKLWSLVP----Q-K----------LKAMKSSDQ-LQDIEMECDDILVRIMDE  447 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~----~-~----------~~~~~~~~~-~~~l~~~~~d~~i~i~d~  447 (711)
                      ..|...|++++|++++++||+|+.||.|++|++..    . .          +..+.++++ ...++.++.++.|++||.
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            35788999999999999999999999999999976    2 2          222344454 667888889999999999


Q ss_pred             CCCe------eEE---EeecccCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEEecC------CCCEEEEEEc
Q psy14440        448 RNAE------TTR---TLVGHEGPVRKLSFSPD-RSLLLSCSQDNTIRLWSLLLWRCLVVYKGH------GHPVWDIKFS  511 (711)
Q Consensus       448 ~~~~------~~~---~l~~h~~~V~~l~fspd-g~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h------~~~V~~v~~s  511 (711)
                      .+.+      ...   .+.+|.+.|++++|+++ +.+|++++.||.|++||+.+++.+..+..|      ...|.+++|+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH  223 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence            8776      332   34689999999999999 789999999999999999999999999877      7899999999


Q ss_pred             CCC-CEEEEEECCC---eEEEEECCCC-ceeEEee-cCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEeeC
Q psy14440        512 PHG-YYFASAGHDR---MARLWATDSY-HPLRLFV-GHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLTG  584 (711)
Q Consensus       512 p~g-~~l~sgs~Dg---~i~lwd~~~~-~~~~~~~-~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~~  584 (711)
                      |++ .++++++.|+   .|++||++++ .++..+. +|...|.+++|+| ++++|++|+.||+|++||+++++.+..+.+
T Consensus       224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~  303 (416)
T 2pm9_A          224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA  303 (416)
T ss_dssp             SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred             CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence            987 6999999999   9999999986 6777888 8999999999999 999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEEEe-----------------------------------eCCC
Q psy14440        585 HKAPVYALSFSVCG-RFLASAGGDGNVHMWDLSNGHLLTLL-----------------------------------TGHT  628 (711)
Q Consensus       585 h~~~I~~la~spdg-~~Lasgs~Dg~I~iwDl~sg~~i~~l-----------------------------------~~h~  628 (711)
                      |...|++++|+|++ .+|++++.||.|+|||+.+++.....                                   ..|.
T Consensus       304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (416)
T 2pm9_A          304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG  383 (416)
T ss_dssp             SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC
T ss_pred             CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc
Confidence            99999999999999 89999999999999999876532211                                   1156


Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        629 DVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       629 ~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ..+.+++|+++|++|++|+.||+|+||++.+
T Consensus       384 ~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          384 EPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             CCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             CCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence            7788999999999999999999999999875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-36  Score=328.73  Aligned_cols=278  Identities=14%  Similarity=0.244  Sum_probs=238.3

Q ss_pred             eEEEEE-ecCCCceEEEEECC-CCCEEEEEeCCCeEEEEeCCC---C-------------ceeeeccCccccccccccCC
Q psy14440        378 IACYTL-LNARQQVTCAEISE-DVSILAVGFSESYIKLWSLVP---Q-------------KLKAMKSSDQLQDIEMECDD  439 (711)
Q Consensus       378 ~~~~tl-~~h~~~V~~l~fs~-dg~~LatG~~dg~I~vWdl~~---~-------------~~~~~~~~~~~~~l~~~~~d  439 (711)
                      ..+.++ .+|.+.|+|++|++ ++++||+|+.||.|+||++.+   .             .+..+.+..+...++.++.|
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d  132 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKD  132 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCC
Confidence            345677 78899999999999 999999999999999999854   2             12334555667778899999


Q ss_pred             cEEEEEecC---CCeeEEEeec------------ccCCEEEEE--EcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec--
Q psy14440        440 ILVRIMDER---NAETTRTLVG------------HEGPVRKLS--FSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG--  500 (711)
Q Consensus       440 ~~i~i~d~~---~~~~~~~l~~------------h~~~V~~l~--fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~--  500 (711)
                      +.|++||..   +++....+.+            +...+.++.  +++++.+|++|+.||+|++||+.+++++..+.+  
T Consensus       133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  212 (437)
T 3gre_A          133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP  212 (437)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred             CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence            999999984   4444443332            455666766  567899999999999999999999999999998  


Q ss_pred             CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEee-cCCCCeeEEEEcC----CCCEEEEEEcCCcEEEEECCC
Q psy14440        501 HGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFV-GHYSDVDCVQFHP----NSNYVATGSSDRTIRLWDCVT  575 (711)
Q Consensus       501 h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~-~h~~~V~~v~~sp----~~~~latgs~Dg~I~iwD~~~  575 (711)
                      |...|++++|+|++.+|++|+.||+|++||+++++.+..+. .|...|.+++|+|    ++.+|++|+.||+|++||+++
T Consensus       213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~  292 (437)
T 3gre_A          213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK  292 (437)
T ss_dssp             GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence            88999999999999999999999999999999999988886 7888999997665    577999999999999999999


Q ss_pred             CcEEEEeeCC--------------------------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC---
Q psy14440        576 GSHVRLLTGH--------------------------KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG---  626 (711)
Q Consensus       576 ~~~v~~~~~h--------------------------~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~---  626 (711)
                      ++++..+.+|                          ...|++++|+ ++++|++|+.||.|++||+.+++.+..+.+   
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~  371 (437)
T 3gre_A          293 GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSR  371 (437)
T ss_dssp             TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--
T ss_pred             CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccc
Confidence            9998887754                          4568889999 889999999999999999999887666665   


Q ss_pred             ----------------------------------CCCCEEEEEEeCC--CCEEEEEeCCCcEEEEe
Q psy14440        627 ----------------------------------HTDVVRALCFSRD--GNILASSGQDCSVKLWD  656 (711)
Q Consensus       627 ----------------------------------h~~~V~sl~fspd--g~~Lasgs~Dg~V~iWd  656 (711)
                                                        |.+.|++++|+++  +.+|++|+.||.|+||+
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          372 FSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                                              8899999999998  77999999999999995

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.7e-35  Score=328.15  Aligned_cols=277  Identities=19%  Similarity=0.195  Sum_probs=226.4

Q ss_pred             EEEecCCCceEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        381 YTLLNARQQVTCAEISE-DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~-dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      .+...|...|+|++|+| ++++||+|+.||.|+|||+.+..                             ......+.+|
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-----------------------------~~~~~~~~gH  163 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-----------------------------KPTFIKGIGA  163 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS-----------------------------CCEEECCCSS
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-----------------------------ceeEEEccCC
Confidence            35678899999999998 56899999999999999986432                             2233456789


Q ss_pred             cCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecC--CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q psy14440        460 EGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH--GHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP  536 (711)
Q Consensus       460 ~~~V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h--~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~  536 (711)
                      .+.|++|+|+| ++++|++|+.||+|++||+++.........|  ...+.+++|++++.+|++|+.||+|++||++. +.
T Consensus       164 ~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~  242 (435)
T 4e54_B          164 GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KE  242 (435)
T ss_dssp             SCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CB
T ss_pred             CCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ce
Confidence            99999999998 7889999999999999999876655444433  44578999999999999999999999999974 56


Q ss_pred             eEEeecCCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEEE---eeCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q psy14440        537 LRLFVGHYSDVDCVQFHPNSN-YVATGSSDRTIRLWDCVTGSHVRL---LTGHKAPVYALSFSVCGRFLASAGGDGNVHM  612 (711)
Q Consensus       537 ~~~~~~h~~~V~~v~~sp~~~-~latgs~Dg~I~iwD~~~~~~v~~---~~~h~~~I~~la~spdg~~Lasgs~Dg~I~i  612 (711)
                      +..+.+|...|.+++|+|++. +|++|+.|++|+|||+++++....   ..+|...|++++|+|+|++|++|+.||.|+|
T Consensus       243 ~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~i  322 (435)
T 4e54_B          243 LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRV  322 (435)
T ss_dssp             CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEE
T ss_pred             eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEE
Confidence            778889999999999999875 788999999999999998765443   3579999999999999999999999999999


Q ss_pred             EECCCCeEEEEeeCCCC------CEEEEEEeCCCCEEEEEeC------------CCcEEEEeCCCCCCccCccccccccc
Q psy14440        613 WDLSNGHLLTLLTGHTD------VVRALCFSRDGNILASSGQ------------DCSVKLWDFAKLSDEVGTEEVNLSHS  674 (711)
Q Consensus       613 wDl~sg~~i~~l~~h~~------~V~sl~fspdg~~Lasgs~------------Dg~V~iWdl~~~~~~~~~~~~~~~~~  674 (711)
                      ||+.+++....+..|..      .+....|++++.++++++.            +++|++||+.+.              
T Consensus       323 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g--------------  388 (435)
T 4e54_B          323 YSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG--------------  388 (435)
T ss_dssp             EESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC--------------
T ss_pred             EECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC--------------
Confidence            99999988887776643      2345678888877777653            357999987642              


Q ss_pred             cccccccccceeee-cccCCcceEEE-EEccCCeeee-C
Q psy14440        675 ADIKNSSLAYLVRS-YKTKASPLLHL-IFSRRNILLR-G  710 (711)
Q Consensus       675 ~~~~~~~~~~~l~~-~~t~~~pV~~v-~Fs~~n~lla-G  710 (711)
                               .++.. +..+...|.++ +|++++.+|| |
T Consensus       389 ---------~~~~~l~~~~~~~v~s~~~fspdg~~lasg  418 (435)
T 4e54_B          389 ---------KMMCQLYDPESSGISSLNEFNPMGDTLASA  418 (435)
T ss_dssp             ---------CEEEEECCSSCCCCCCEEEECTTSSCEEEE
T ss_pred             ---------cEEEEEeCCCCCcEEEEEEECCCCCEEEEE
Confidence                     12222 44577788887 6999999998 5

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-36  Score=326.62  Aligned_cols=272  Identities=14%  Similarity=0.122  Sum_probs=222.4

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCC--c-----------eeeeccCccccccccccCCcEEEEEecCCC
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQ--K-----------LKAMKSSDQLQDIEMECDDILVRIMDERNA  450 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~--~-----------~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  450 (711)
                      ..+.+.|+|++|++||++||+|+.||.|+||++.+.  +           +..+.++++...++.++.|+.|++||..++
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~   87 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD   87 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence            446679999999999999999999999999999765  2           223445566778888999999999999887


Q ss_pred             e---eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---EEEEEec-CCCCEEEEEEcCCCCEEEEEECC
Q psy14440        451 E---TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR---CLVVYKG-HGHPVWDIKFSPHGYYFASAGHD  523 (711)
Q Consensus       451 ~---~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~---~~~~~~~-h~~~V~~v~~sp~g~~l~sgs~D  523 (711)
                      .   ....+.+|.+.|++++|++++++|++|+.|++|++||+.+++   ....+.+ |...|++++|+|++++|++|+.|
T Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d  167 (377)
T 3dwl_C           88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD  167 (377)
T ss_dssp             -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred             CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence            6   677888999999999999999999999999999999998877   4677877 99999999999999999999999


Q ss_pred             CeEEEEECC------------------CCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE----EEE
Q psy14440        524 RMARLWATD------------------SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH----VRL  581 (711)
Q Consensus       524 g~i~lwd~~------------------~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~----v~~  581 (711)
                      ++|++||++                  .++.+..+ +|...|.+++|+|++++|++|+.||+|++||+.+++.    +..
T Consensus       168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  246 (377)
T 3dwl_C          168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT  246 (377)
T ss_dssp             SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred             CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence            999999985                  24455666 8999999999999999999999999999999999987    788


Q ss_pred             eeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---------------------------------------EEE
Q psy14440        582 LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGH---------------------------------------LLT  622 (711)
Q Consensus       582 ~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~---------------------------------------~i~  622 (711)
                      +.+|...|.+++|+++|++|++|+.++.+ +|+...+.                                       ...
T Consensus       247 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (377)
T 3dwl_C          247 VKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFR  325 (377)
T ss_dssp             EECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------------
T ss_pred             ecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999876655 66654211                                       011


Q ss_pred             E-------------eeCCCCCEEEEEEeCC-CC---EEEEEeCCCcEEEEeC
Q psy14440        623 L-------------LTGHTDVVRALCFSRD-GN---ILASSGQDCSVKLWDF  657 (711)
Q Consensus       623 ~-------------l~~h~~~V~sl~fspd-g~---~Lasgs~Dg~V~iWdl  657 (711)
                      .             ...|.+.|+++++.+. +.   .|+|||.||+|+|||+
T Consensus       326 ~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          326 NMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             -----------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             chhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            1             0138999999997654 33   6999999999999996

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-34  Score=315.74  Aligned_cols=278  Identities=23%  Similarity=0.348  Sum_probs=240.8

Q ss_pred             EEEEecCCCc--eEEEEECCCCCEEEEEeCCCeEEEEeCCCCce------------eeeccCccccccccccCCcEEEEE
Q psy14440        380 CYTLLNARQQ--VTCAEISEDVSILAVGFSESYIKLWSLVPQKL------------KAMKSSDQLQDIEMECDDILVRIM  445 (711)
Q Consensus       380 ~~tl~~h~~~--V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~------------~~~~~~~~~~~l~~~~~d~~i~i~  445 (711)
                      .+...+|...  +.+++|++  ..+++|+.||.|++|++.+++.            ..+.++.+...+++++.++.+++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  161 (401)
T 4aez_A           84 VLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY  161 (401)
T ss_dssp             EEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence            4445566665  45566665  4577888999999999976553            334455667778889999999999


Q ss_pred             ecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Q psy14440        446 DERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL-LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDR  524 (711)
Q Consensus       446 d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~-t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg  524 (711)
                      |..+++....+.+|.+.|.+++|  ++++|++|+.||.|++||+. ....+..+.+|...|.+++|++++.+|++|+.||
T Consensus       162 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~  239 (401)
T 4aez_A          162 DVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN  239 (401)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence            99999999999999999999999  56799999999999999998 5677888999999999999999999999999999


Q ss_pred             eEEEEECCCCceeEEeecCCCCeeEEEEcCCC-CEEEEEE--cCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEE
Q psy14440        525 MARLWATDSYHPLRLFVGHYSDVDCVQFHPNS-NYVATGS--SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFL  601 (711)
Q Consensus       525 ~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~latgs--~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~L  601 (711)
                      .|++||+++++.+..+.+|...|.+++|+|++ .++++|+  .|+.|++||+.+++.+..+. +...|.+++|+++|++|
T Consensus       240 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l  318 (401)
T 4aez_A          240 VVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEI  318 (401)
T ss_dssp             CEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEE
T ss_pred             eEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeE
Confidence            99999999999999999999999999999976 4566654  69999999999999998886 66789999999999999


Q ss_pred             EEE--eCCCcEEEEECCCCeEEE--EeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        602 ASA--GGDGNVHMWDLSNGHLLT--LLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       602 asg--s~Dg~I~iwDl~sg~~i~--~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      +++  +.||.|++||+.+++...  .+.+|.+.|.+++|+++|++|++|+.||+|++||+.....
T Consensus       319 ~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          319 MSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             EEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred             EEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence            995  489999999999976554  4679999999999999999999999999999999986543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.3e-34  Score=307.47  Aligned_cols=268  Identities=10%  Similarity=0.064  Sum_probs=234.1

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCE
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV  463 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V  463 (711)
                      .+|.+.|++++|++++++|++|+.||.|+||++.+..                            .......+.+|.+.|
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~----------------------------~~~~~~~~~~~~~~v   59 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA----------------------------KNVDLLQSLRYKHPL   59 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT----------------------------TEEEEEEEEECSSCE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC----------------------------ccccceeeeecCCce
Confidence            5789999999999999999999999999999985432                            111234455899999


Q ss_pred             EEEEEcCCCC-EEEEEeCCCeEEEEEC-CCCeEEEEEec--CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC------
Q psy14440        464 RKLSFSPDRS-LLLSCSQDNTIRLWSL-LLWRCLVVYKG--HGHPVWDIKFSPHGYYFASAGHDRMARLWATDS------  533 (711)
Q Consensus       464 ~~l~fspdg~-~L~s~s~Dg~V~iwdl-~t~~~~~~~~~--h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~------  533 (711)
                      ++++|+++++ +|++|+.||.|++||+ .+++. ..+.+  |...|++++|++ +.+|++++.|+.|++||+++      
T Consensus        60 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~  137 (342)
T 1yfq_A           60 LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI  137 (342)
T ss_dssp             EEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred             EEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc
Confidence            9999999999 9999999999999999 87755 67788  999999999999 99999999999999999987      


Q ss_pred             ---CceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-Cc--EEEEeeCCCCCeEEEEEec-CCCEEEEEeC
Q psy14440        534 ---YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT-GS--HVRLLTGHKAPVYALSFSV-CGRFLASAGG  606 (711)
Q Consensus       534 ---~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~-~~--~v~~~~~h~~~I~~la~sp-dg~~Lasgs~  606 (711)
                         ++++..+. |...|.+++|++++  +++|+.|+.|++||+++ +.  .......|...|.+++|++ ++++|++|+.
T Consensus       138 ~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~  214 (342)
T 1yfq_A          138 AVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI  214 (342)
T ss_dssp             EEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred             cccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec
Confidence               77676666 88999999999887  99999999999999998 54  3345567889999999999 9999999999


Q ss_pred             CCcEEEEECCCC------eEEEEeeCCCC---------CEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcccccc
Q psy14440        607 DGNVHMWDLSNG------HLLTLLTGHTD---------VVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNL  671 (711)
Q Consensus       607 Dg~I~iwDl~sg------~~i~~l~~h~~---------~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~  671 (711)
                      ||.|++||+..+      +.+..+.+|..         .|++++|++++++|++|+.||.|++||+.+            
T Consensus       215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~------------  282 (342)
T 1yfq_A          215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT------------  282 (342)
T ss_dssp             TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT------------
T ss_pred             CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc------------
Confidence            999999999887      77788888865         999999999999999999999999999864            


Q ss_pred             ccccccccccccceeeecccC-CcceEEEEEccCCeeee
Q psy14440        672 SHSADIKNSSLAYLVRSYKTK-ASPLLHLIFSRRNILLR  709 (711)
Q Consensus       672 ~~~~~~~~~~~~~~l~~~~t~-~~pV~~v~Fs~~n~lla  709 (711)
                                 ...+..+..+ ..+|.+++  +++.+|+
T Consensus       283 -----------~~~~~~~~~~h~~~v~~~~--~~~~~l~  308 (342)
T 1yfq_A          283 -----------RKKIKNFAKFNEDSVVKIA--CSDNILC  308 (342)
T ss_dssp             -----------TEEEEECCCCSSSEEEEEE--ECSSEEE
T ss_pred             -----------HhHhhhhhcccCCCceEec--CCCCeEE
Confidence                       2335567777 88999999  8888877

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.1e-33  Score=353.03  Aligned_cols=330  Identities=26%  Similarity=0.372  Sum_probs=272.9

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee-----------eccCc--cccccccccCCcEEEE
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKA-----------MKSSD--QLQDIEMECDDILVRI  444 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~-----------~~~~~--~~~~l~~~~~d~~i~i  444 (711)
                      .+..++.+|.+.|+|++|++||++||+|+.||.|+|||+.+++...           +.++.  +...++.++.++.|++
T Consensus       648 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~v  727 (1249)
T 3sfz_A          648 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL  727 (1249)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEE
T ss_pred             CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEE
Confidence            3456778899999999999999999999999999999998765322           22333  3345677888999999


Q ss_pred             EecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-------------------------
Q psy14440        445 MDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK-------------------------  499 (711)
Q Consensus       445 ~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~-------------------------  499 (711)
                      ||..+++....+.+|.+.|++++|+|++++|++|+.||+|++||+.++.....+.                         
T Consensus       728 wd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  807 (1249)
T 3sfz_A          728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS  807 (1249)
T ss_dssp             EETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBC
T ss_pred             EECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEEC
Confidence            9999999999999999999999999999999999999999999997765544332                         


Q ss_pred             ------------------------------cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeE
Q psy14440        500 ------------------------------GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDC  549 (711)
Q Consensus       500 ------------------------------~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~  549 (711)
                                                    +|...|.+++|+|++.++++++.||.|++||+.++..+..+.+|...|.+
T Consensus       808 ~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~  887 (1249)
T 3sfz_A          808 ADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHG  887 (1249)
T ss_dssp             TTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEE
Confidence                                          67888999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEEcCCcEEEEECC-------------------------------------------------------
Q psy14440        550 VQFHPNSNYVATGSSDRTIRLWDCV-------------------------------------------------------  574 (711)
Q Consensus       550 v~~sp~~~~latgs~Dg~I~iwD~~-------------------------------------------------------  574 (711)
                      ++|+|++++|++++.||+|++||+.                                                       
T Consensus       888 v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  967 (1249)
T 3sfz_A          888 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCC  967 (1249)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEE
Confidence            9999999999999999888888742                                                       


Q ss_pred             ------------------------CCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCC
Q psy14440        575 ------------------------TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDV  630 (711)
Q Consensus       575 ------------------------~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~  630 (711)
                                              +++.+..+.+|...|++++|+++|++|++|+.||.|++||+.+++.+. +.+|...
T Consensus       968 ~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~ 1046 (1249)
T 3sfz_A          968 CLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQET 1046 (1249)
T ss_dssp             EECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSC
T ss_pred             EEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCc
Confidence                                    334445566799999999999999999999999999999999998764 5679999


Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccc----c---c------------cccccccccccccceeeeccc
Q psy14440        631 VRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEE----V---N------------LSHSADIKNSSLAYLVRSYKT  691 (711)
Q Consensus       631 V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~----~---~------------~~~~~~~~~~~~~~~l~~~~t  691 (711)
                      |.+++|++++ .+++++.||+|++||+.+.........    +   .            ......++.......+..+..
T Consensus      1047 v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~ 1125 (1249)
T 3sfz_A         1047 VKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG 1125 (1249)
T ss_dssp             EEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCC
T ss_pred             EEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeecc
Confidence            9999999965 578899999999999987543211100    0   0            001111223334556677888


Q ss_pred             CCcceEEEEEccCCeeee
Q psy14440        692 KASPLLHLIFSRRNILLR  709 (711)
Q Consensus       692 ~~~pV~~v~Fs~~n~lla  709 (711)
                      |..+|.+++|++++.+||
T Consensus      1126 h~~~v~~~~~s~dg~~la 1143 (1249)
T 3sfz_A         1126 HNGCVRCSAFSLDGILLA 1143 (1249)
T ss_dssp             CSSCEEEEEECSSSSEEE
T ss_pred             CCCcEEEEEECCCCCEEE
Confidence            999999999999999988

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-34  Score=345.91  Aligned_cols=309  Identities=12%  Similarity=0.112  Sum_probs=234.9

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee----------------------eeccCc-cccccccc
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLK----------------------AMKSSD-QLQDIEME  436 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~----------------------~~~~~~-~~~~l~~~  436 (711)
                      +.++ .|.+.|++++|++++++||+|+.||.|++||+.+.++.                      .+.+++ +...++++
T Consensus        92 ~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g  170 (902)
T 2oaj_A           92 LTTV-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS  170 (902)
T ss_dssp             EEEE-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred             EEEE-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence            3344 36789999999999999999999999999999876542                      122233 34567888


Q ss_pred             cCCcEEEEEecCCCeeEEEeecc------------------cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Q psy14440        437 CDDILVRIMDERNAETTRTLVGH------------------EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY  498 (711)
Q Consensus       437 ~~d~~i~i~d~~~~~~~~~l~~h------------------~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~  498 (711)
                      +.++.+ +||..+++....+.+|                  .+.|++++|+|+|++|++|+.||+|++||+.+++++...
T Consensus       171 ~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r  249 (902)
T 2oaj_A          171 YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMAR  249 (902)
T ss_dssp             CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence            899999 9999999988888766                  578999999999999999999999999999998877542


Q ss_pred             e-----c-------------CCCCEEEEEEcC----CC-CEEEEEECC--------------------------------
Q psy14440        499 K-----G-------------HGHPVWDIKFSP----HG-YYFASAGHD--------------------------------  523 (711)
Q Consensus       499 ~-----~-------------h~~~V~~v~~sp----~g-~~l~sgs~D--------------------------------  523 (711)
                      .     +             |...|++++|++    ++ ..+++|+.|                                
T Consensus       250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~  329 (902)
T 2oaj_A          250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYA  329 (902)
T ss_dssp             CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHH
T ss_pred             eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhc
Confidence            1     1             244789999953    32 345555433                                


Q ss_pred             --------------------------------------------CeEEEEECCCCceeEE--------------------
Q psy14440        524 --------------------------------------------RMARLWATDSYHPLRL--------------------  539 (711)
Q Consensus       524 --------------------------------------------g~i~lwd~~~~~~~~~--------------------  539 (711)
                                                                  |+|++|++.++.....                    
T Consensus       330 ~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~  409 (902)
T 2oaj_A          330 NPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMA  409 (902)
T ss_dssp             SCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEE
T ss_pred             CccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEE
Confidence                                                        4445555433322111                    


Q ss_pred             ---------------------eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE----EE--ee-----CCCC
Q psy14440        540 ---------------------FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV----RL--LT-----GHKA  587 (711)
Q Consensus       540 ---------------------~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v----~~--~~-----~h~~  587 (711)
                                           +.+|...+.+++|+|++++|++|+.|++|++||+.++...    ..  +.     +|..
T Consensus       410 s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~  489 (902)
T 2oaj_A          410 ASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKEL  489 (902)
T ss_dssp             EEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSC
T ss_pred             EEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCC
Confidence                                 1223333444556788999999999999999999887421    11  11     7999


Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEECCCC---------------------------------------------eEEE
Q psy14440        588 PVYALSFSVCGRFLASAGGDGNVHMWDLSNG---------------------------------------------HLLT  622 (711)
Q Consensus       588 ~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg---------------------------------------------~~i~  622 (711)
                      .|++++|+|||++||+|+.||+|+|||+.++                                             +++.
T Consensus       490 ~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  569 (902)
T 2oaj_A          490 AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPST  569 (902)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEE
T ss_pred             ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeE
Confidence            9999999999999999999999999999766                                             3477


Q ss_pred             EeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecc-cCCcceEEEEE
Q psy14440        623 LLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYK-TKASPLLHLIF  701 (711)
Q Consensus       623 ~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-t~~~pV~~v~F  701 (711)
                      .+.+|.+.|++++||||| +||+|+.||+|+|||+......                  ....++.+. +|...|.+|+|
T Consensus       570 ~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~------------------~~~~~~~~~~gh~~~V~sv~F  630 (902)
T 2oaj_A          570 AVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAII------------------YMENIREISGAQSACVTCIEF  630 (902)
T ss_dssp             EECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEE------------------EEEEGGGTCSSCCCCEEEEEE
T ss_pred             EEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEE------------------EEeehhHhccccccceEEEEE
Confidence            888999999999999999 9999999999999997642110                  000113454 88899999999


Q ss_pred             c-----cCC---eeee
Q psy14440        702 S-----RRN---ILLR  709 (711)
Q Consensus       702 s-----~~n---~lla  709 (711)
                      +     +||   .+|+
T Consensus       631 s~~~~~~Dg~~~~~l~  646 (902)
T 2oaj_A          631 VIMEYGDDGYSSILMV  646 (902)
T ss_dssp             EEEECTTSSSEEEEEE
T ss_pred             EEEecCCCCCcceEEE
Confidence            9     885   7777

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.2e-34  Score=299.63  Aligned_cols=238  Identities=20%  Similarity=0.335  Sum_probs=205.0

Q ss_pred             EEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEEecCCCCEEEEEEcC--CCCEEEEEECCCeEEEE
Q psy14440        454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL--WRCLVVYKGHGHPVWDIKFSP--HGYYFASAGHDRMARLW  529 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t--~~~~~~~~~h~~~V~~v~~sp--~g~~l~sgs~Dg~i~lw  529 (711)
                      ..+.+|.+.|++++|+++|++|++|+.|++|+|||+..  .+.+..+.+|...|++++|++  ++++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            35678999999999999999999999999999999974  467889999999999999986  48999999999999999


Q ss_pred             ECCCCc--eeEEeecCCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCc--EEEEeeCCCCCeEEEEEecC------
Q psy14440        530 ATDSYH--PLRLFVGHYSDVDCVQFHPN--SNYVATGSSDRTIRLWDCVTGS--HVRLLTGHKAPVYALSFSVC------  597 (711)
Q Consensus       530 d~~~~~--~~~~~~~h~~~V~~v~~sp~--~~~latgs~Dg~I~iwD~~~~~--~v~~~~~h~~~I~~la~spd------  597 (711)
                      |+++++  .+..+.+|...|.+++|+|+  +.+|++|+.|++|++||++++.  ....+.+|...|.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998763  56678889999999999997  8999999999999999998763  24667899999999999997      


Q ss_pred             -------CCEEEEEeCCCcEEEEECCCCe----EEEEeeCCCCCEEEEEEeCCC---CEEEEEeCCCcEEEEeCCCCCCc
Q psy14440        598 -------GRFLASAGGDGNVHMWDLSNGH----LLTLLTGHTDVVRALCFSRDG---NILASSGQDCSVKLWDFAKLSDE  663 (711)
Q Consensus       598 -------g~~Lasgs~Dg~I~iwDl~sg~----~i~~l~~h~~~V~sl~fspdg---~~Lasgs~Dg~V~iWdl~~~~~~  663 (711)
                             +++|++|+.||+|+|||+++++    .+..+.+|.+.|++++|+|++   ++|++|+.||+|+|||+......
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~  242 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP  242 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence                   5799999999999999998765    677889999999999999985   89999999999999998752210


Q ss_pred             cCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        664 VGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      .                  ...+.....+...|.+++|++++.+||
T Consensus       243 ~------------------~~~~~~~~~~~~~v~~~~~s~~g~~la  270 (297)
T 2pm7_B          243 W------------------KKTLLKEEKFPDVLWRASWSLSGNVLA  270 (297)
T ss_dssp             C------------------EEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred             c------------------ceeeeecccCCCcEEEEEECCCCCEEE
Confidence            0                  000111234567899999999999888

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.1e-33  Score=308.28  Aligned_cols=268  Identities=25%  Similarity=0.449  Sum_probs=236.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-------------eeeccCccccccccccCCcEEEEEecCCCeeEEE
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKL-------------KAMKSSDQLQDIEMECDDILVRIMDERNAETTRT  455 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~-------------~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  455 (711)
                      -+++++||.+ ++||+|. |++|+|||..++++             ..+.+++++..+++++.|+.|++||..+++.++.
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            3788999975 5888886 89999999987653             3455667778899999999999999999999999


Q ss_pred             eecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        456 LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL-WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       456 l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t-~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      +.+|...|.+++|+  +..|++|+.|+.+++||... ...+..+.+|...+..+.|++++.++++++.|+.+++|+..++
T Consensus       185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            99999999999885  67999999999999999976 4566788999999999999999999999999999999999876


Q ss_pred             c----eeEEeecCCCCeeEEEEcCCC-CEEEEE--EcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEe--
Q psy14440        535 H----PLRLFVGHYSDVDCVQFHPNS-NYVATG--SSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAG--  605 (711)
Q Consensus       535 ~----~~~~~~~h~~~V~~v~~sp~~-~~latg--s~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs--  605 (711)
                      +    .+.....|...|.+++|+|++ +.++++  +.|++|++||+.+++++..+..| ..+.++.|+++++.|++++  
T Consensus       263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~  341 (420)
T 4gga_A          263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGF  341 (420)
T ss_dssp             SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECT
T ss_pred             cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEec
Confidence            4    456777899999999999965 555554  46999999999999999888754 5689999999999998765  


Q ss_pred             CCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        606 GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       606 ~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      .||.|+|||+.+++.+..+.+|.+.|++++|+|||++|+|||.||+|+|||+....
T Consensus       342 ~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          342 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            78999999999999999999999999999999999999999999999999997644

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.9e-33  Score=303.59  Aligned_cols=282  Identities=18%  Similarity=0.252  Sum_probs=237.2

Q ss_pred             EEEEecCCCceEEEEECC-CCCEEEEEeCCCeEEEEeCCCCce------------------------eeeccCc-ccccc
Q psy14440        380 CYTLLNARQQVTCAEISE-DVSILAVGFSESYIKLWSLVPQKL------------------------KAMKSSD-QLQDI  433 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~-dg~~LatG~~dg~I~vWdl~~~~~------------------------~~~~~~~-~~~~l  433 (711)
                      ...+.+|.+.|+|++|++ ++++||+|+.||.|++|++.+...                        ..+.+.. +...+
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            345677999999999999 999999999999999999976432                        2233344 44567


Q ss_pred             ccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCC---CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEE
Q psy14440        434 EMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPD---RSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKF  510 (711)
Q Consensus       434 ~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspd---g~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~  510 (711)
                      +.++.++.+++||..+++....+. +...+.++.|++.   +.++++++.||.|++||+.+++.+..+.+|...|.+++|
T Consensus       116 ~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~  194 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSW  194 (408)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEE
T ss_pred             EEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEE
Confidence            788889999999999998887776 7888999999984   459999999999999999999999999999999999999


Q ss_pred             cCCCC-EEEEEECCCeEEEEECCCCc-eeEEe---------------ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC
Q psy14440        511 SPHGY-YFASAGHDRMARLWATDSYH-PLRLF---------------VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDC  573 (711)
Q Consensus       511 sp~g~-~l~sgs~Dg~i~lwd~~~~~-~~~~~---------------~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~  573 (711)
                      +|++. .|++|+.||.|++||++++. .+..+               .+|...|.+++|+|++++|++|+.||.|++||+
T Consensus       195 ~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (408)
T 4a11_B          195 SPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS  274 (408)
T ss_dssp             CSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEEC
Confidence            99998 59999999999999998765 34443               578899999999999999999999999999999


Q ss_pred             CCCcEEEEeeCCC-----CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC
Q psy14440        574 VTGSHVRLLTGHK-----APVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       574 ~~~~~v~~~~~h~-----~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~  648 (711)
                      .+++....+.++.     ..+........+..+++++.||.|++||+.+++.+..+.+|.+.|++++|++++++|++|+.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  354 (408)
T 4a11_B          275 SNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR  354 (408)
T ss_dssp             TTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECC
Confidence            9988765554321     12222222334566777788999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCCCCCC
Q psy14440        649 DCSVKLWDFAKLSD  662 (711)
Q Consensus       649 Dg~V~iWdl~~~~~  662 (711)
                      ||.|++||+.....
T Consensus       355 dg~i~iw~~~~~~~  368 (408)
T 4a11_B          355 DCNILAWVPSLYEP  368 (408)
T ss_dssp             TSCEEEEEECC---
T ss_pred             CCeEEEEeCCCCCc
Confidence            99999999987654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.9e-33  Score=322.76  Aligned_cols=270  Identities=16%  Similarity=0.190  Sum_probs=247.2

Q ss_pred             cCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCC----c------------eeeeccCc--cccccccccCCcEEEEEe
Q psy14440        385 NARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQ----K------------LKAMKSSD--QLQDIEMECDDILVRIMD  446 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~----~------------~~~~~~~~--~~~~l~~~~~d~~i~i~d  446 (711)
                      .|.+.|++++|++||++||+|+ ++.|+||++.+.    +            +..+..++  +...+++++.++.|++||
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~   94 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   94 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence            5789999999999999999998 789999999765    2            34455667  778888899999999999


Q ss_pred             cCCC--------eeEEEeecccCCEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCC
Q psy14440        447 ERNA--------ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQD----NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG  514 (711)
Q Consensus       447 ~~~~--------~~~~~l~~h~~~V~~l~fspdg~~L~s~s~D----g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g  514 (711)
                      ..++        .....+.+|.+.|.+++|++++++|++++.+    +.|++||  +++.+..+.+|...|++++|+|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~  172 (615)
T 1pgu_A           95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR  172 (615)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSS
T ss_pred             CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCC
Confidence            8744        6778888999999999999999999999988    6888888  677888999999999999999999


Q ss_pred             C-EEEEEECCCeEEEEECCCCceeEEeecCCC---CeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEe-e---CC
Q psy14440        515 Y-YFASAGHDRMARLWATDSYHPLRLFVGHYS---DVDCVQFHPN-SNYVATGSSDRTIRLWDCVTGSHVRLL-T---GH  585 (711)
Q Consensus       515 ~-~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~---~V~~v~~sp~-~~~latgs~Dg~I~iwD~~~~~~v~~~-~---~h  585 (711)
                      . .+++++.|+.|++||..+++.+..+.+|..   .|.+++|+|+ +++|++|+.||.|++||+.+++.+..+ .   +|
T Consensus       173 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  252 (615)
T 1pgu_A          173 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV  252 (615)
T ss_dssp             SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC
T ss_pred             CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc
Confidence            7 899999999999999999999999999999   9999999999 999999999999999999999999999 6   89


Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCC----CCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        586 KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGH----TDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       586 ~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h----~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ...|.+++|+ ++++|++++.||.|++||+.+++.+..+..+    ...+.++.|+ +++++++|+.||.|++||+..
T Consensus       253 ~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~  328 (615)
T 1pgu_A          253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH  328 (615)
T ss_dssp             CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE
T ss_pred             CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC
Confidence            9999999999 9999999999999999999999999999877    3678889987 899999999999999999875

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-35  Score=326.96  Aligned_cols=306  Identities=13%  Similarity=0.103  Sum_probs=231.5

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCc-cccccccccCCcEEEEEecCCCeeEEEee-cccCCE
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSD-QLQDIEMECDDILVRIMDERNAETTRTLV-GHEGPV  463 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~V  463 (711)
                      -...|.+++|||||+++|+|+.|++|+  +....+  .+..+. ....+.. .-+|.+..|+..+++....+. .|...|
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~--~l~gh~~~v~~V~F-sPdg~~~~~~~~~~~~~~~~~~~~~~~V   88 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK--DINCNSKNLFHVKE-FPLEFENKLDFELAQQNGLLNSQPVCYP   88 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS--CCSSBGGGTEEEEE-ECCCCCCTTTTSCCCSSCSSTTSCSCCE
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--cccccc--eecCCCccEEEEEE-CCCCCcceEEEEeCCCceEeecCCCCcE
Confidence            347899999999999999999999999  543322  221111 1111212 223345555555444333333 668899


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC-----CEEEEEEcCCCCEEEEEECCCeEEEEECCCCce--
Q psy14440        464 RKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGH-----PVWDIKFSPHGYYFASAGHDRMARLWATDSYHP--  536 (711)
Q Consensus       464 ~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~-----~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~--  536 (711)
                      ++++|||||..|++++.||+|++||..+  ++..+. |..     .|.+++|||+|++|++|+.||+|++||+.++..  
T Consensus        89 ~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~  165 (588)
T 2j04_A           89 RVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENT  165 (588)
T ss_dssp             EEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccc
Confidence            9999999999999999999999999654  666667 665     499999999999999999999999999998752  


Q ss_pred             -----eEEe----ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE---EEEe-eCCCCCeEEEEEecCCCEEEE
Q psy14440        537 -----LRLF----VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH---VRLL-TGHKAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       537 -----~~~~----~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~---v~~~-~~h~~~I~~la~spdg~~Las  603 (711)
                           +..+    .+|...|.+++|+|+|  +++++.|++|++||+.++..   .+++ .+|...|.+++|+  |++||+
T Consensus       166 ~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LAS  241 (588)
T 2j04_A          166 PEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVL  241 (588)
T ss_dssp             CCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEE
T ss_pred             ccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEE
Confidence                 5666    6778899999999999  88899999999999988773   3566 4788999999999  689999


Q ss_pred             EeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEE--eCCCCEEEEEeCCCcEEEEeCCCCCCccCcccccc---ccccccc
Q psy14440        604 AGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCF--SRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNL---SHSADIK  678 (711)
Q Consensus       604 gs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~f--spdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~---~~~~~~~  678 (711)
                      ++ +|+|++||+.+++......+|.+.|++++|  ++++..|++++.||+ ++|.+....  ......-.   .....++
T Consensus       242 a~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~--~spd~~l~a~~d~~v~lW  317 (588)
T 2j04_A          242 TC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELH--VTADNIIAPYLEKKFKKW  317 (588)
T ss_dssp             EC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEE--EECCCSSHHHHHHHHHHT
T ss_pred             Ee-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEE--ECCCceEEEEcCCEEEEE
Confidence            97 699999999988875545489999999999  999999999999999 999987422  11110000   0001111


Q ss_pred             cccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        679 NSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       679 ~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                       ......+..+.+ ...|++|+|||||.++|
T Consensus       318 -~~~g~~l~~~~~-~~~I~~va~SPdG~~lA  346 (588)
T 2j04_A          318 -STIWNEFNNYET-TLVIHGISLSPDGYSIA  346 (588)
T ss_dssp             -TTTTTSSSSSCC-EEEEEEEEECTTSSEEE
T ss_pred             -ECCCCceeeecc-ceEEEEEEECCCCCEEE
Confidence             112222444544 66799999999999998

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.4e-33  Score=307.58  Aligned_cols=271  Identities=23%  Similarity=0.436  Sum_probs=245.7

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccC---------ccccccccccCCcEEEEEecCC
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSS---------DQLQDIEMECDDILVRIMDERN  449 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~---------~~~~~l~~~~~d~~i~i~d~~~  449 (711)
                      +..++.+|.+.|++++|+  +++|++|+.||.|++||+.+++.......         .+...+++++.++.+++||..+
T Consensus       151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~  228 (445)
T 2ovr_B          151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET  228 (445)
T ss_dssp             EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSS
T ss_pred             EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCC
Confidence            456778999999999998  67999999999999999987653322111         1234578888999999999999


Q ss_pred             CeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q psy14440        450 AETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLW  529 (711)
Q Consensus       450 ~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lw  529 (711)
                      ++....+.+|.+.|.+++|  ++++|++|+.||.|++||+.+++.+..+.+|...|.++.|  ++.++++|+.||.|++|
T Consensus       229 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~  304 (445)
T 2ovr_B          229 GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVW  304 (445)
T ss_dssp             CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred             CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEE
Confidence            9999999999999999999  7889999999999999999999999999999999999999  78899999999999999


Q ss_pred             ECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC---CCCCeEEEEEecCCCEEEEEeC
Q psy14440        530 ATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG---HKAPVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       530 d~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~---h~~~I~~la~spdg~~Lasgs~  606 (711)
                      |+++++.+..+.+|...+.++.++  ++++++|+.||.|++||+++++.+..+.+   |...|++++|+  +++|++|+.
T Consensus       305 d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~  380 (445)
T 2ovr_B          305 DVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD  380 (445)
T ss_dssp             ETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEET
T ss_pred             ECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeC
Confidence            999999999999999999998885  67999999999999999999999999986   88899999995  789999999


Q ss_pred             CCcEEEEECCCCeEEEEe-----eCCCCCEEEEEEeCCCCEEEEEeCCCc----EEEEeCCC
Q psy14440        607 DGNVHMWDLSNGHLLTLL-----TGHTDVVRALCFSRDGNILASSGQDCS----VKLWDFAK  659 (711)
Q Consensus       607 Dg~I~iwDl~sg~~i~~l-----~~h~~~V~sl~fspdg~~Lasgs~Dg~----V~iWdl~~  659 (711)
                      ||.|++||+.+++.+..+     .+|.+.|++++|++++.+|++|+.||+    |.|||+..
T Consensus       381 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          381 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            999999999999999888     478889999999999999999999998    99999975

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.6e-33  Score=310.24  Aligned_cols=268  Identities=28%  Similarity=0.550  Sum_probs=236.6

Q ss_pred             EecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCC
Q psy14440        383 LLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGP  462 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~  462 (711)
                      ..+|...|+|++|  |+++|++|+.||.|++||+.                               +++....+.+|.+.
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~-------------------------------~~~~~~~~~~h~~~  175 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKN-------------------------------TLECKRILTGHTGS  175 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESS-------------------------------SCCEEEEECCCSSC
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCC-------------------------------CCeEEEEEcCCCCc
Confidence            4567788999988  78999999999999999984                               34456678899999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee---EE
Q psy14440        463 VRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL---RL  539 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~---~~  539 (711)
                      |.+++|  ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+  +.++++|+.||+|++||++++...   ..
T Consensus       176 v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  251 (435)
T 1p22_A          176 VLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRV  251 (435)
T ss_dssp             EEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEE
T ss_pred             EEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeE
Confidence            999999  78899999999999999999999999999999999999997  459999999999999999987765   67


Q ss_pred             eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q psy14440        540 FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGH  619 (711)
Q Consensus       540 ~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~  619 (711)
                      +.+|...|.+++|  ++++|++|+.||+|++||+++++.+..+.+|...|.+++|+  +++|++|+.||.|++||+++++
T Consensus       252 ~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~  327 (435)
T 1p22_A          252 LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA  327 (435)
T ss_dssp             ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC
T ss_pred             ecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCC
Confidence            7899999999999  68899999999999999999999999999999999999994  7899999999999999999999


Q ss_pred             EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEE
Q psy14440        620 LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHL  699 (711)
Q Consensus       620 ~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v  699 (711)
                      .+..+.+|.+.|.+++|  ++++|++|+.||+|++||+........              ......+..+..|..+|.++
T Consensus       328 ~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~--------------~~~~~~~~~~~~h~~~v~~l  391 (435)
T 1p22_A          328 CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA--------------PAGTLCLRTLVEHSGRVFRL  391 (435)
T ss_dssp             EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS--------------CTTTTEEEEECCCSSCCCCE
T ss_pred             EEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc--------------cccchheeeccCCCCCeEEE
Confidence            99999999999999999  789999999999999999865332111              11233667788999999999


Q ss_pred             EEccCCeeee
Q psy14440        700 IFSRRNILLR  709 (711)
Q Consensus       700 ~Fs~~n~lla  709 (711)
                      +|  ++.+|+
T Consensus       392 ~~--~~~~l~  399 (435)
T 1p22_A          392 QF--DEFQIV  399 (435)
T ss_dssp             EE--CSSCEE
T ss_pred             Ee--CCCEEE
Confidence            99  455555

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3e-33  Score=298.67  Aligned_cols=278  Identities=16%  Similarity=0.253  Sum_probs=235.5

Q ss_pred             CceEEEEEecCCCceEEEEECCC---CCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCee
Q psy14440        376 PSIACYTLLNARQQVTCAEISED---VSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAET  452 (711)
Q Consensus       376 ps~~~~tl~~h~~~V~~l~fs~d---g~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  452 (711)
                      |...+..+.+|.+.|+|++|+++   |++||+|+.||.|+||++.+.                             ....
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~-----------------------------~~~~   78 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS-----------------------------GQTI   78 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT-----------------------------SCEE
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC-----------------------------Ccee
Confidence            44455677899999999999999   699999999999999998531                             1122


Q ss_pred             EEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEE--cCCCCEEEEEECCCeEEEEE
Q psy14440        453 TRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKF--SPHGYYFASAGHDRMARLWA  530 (711)
Q Consensus       453 ~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~--sp~g~~l~sgs~Dg~i~lwd  530 (711)
                      ...+.+|.+.|++++|++++++|++|+.||+|++||+.+++.+. +.+|...|++++|  ++++.+|++++.||.|++||
T Consensus        79 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd  157 (368)
T 3mmy_A           79 PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD  157 (368)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEEC
T ss_pred             EEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEE
Confidence            36677899999999999999999999999999999999998776 5569999999999  88999999999999999999


Q ss_pred             CCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEe--eCCCCCeEEEEEecCCCE----EEEE
Q psy14440        531 TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLL--TGHKAPVYALSFSVCGRF----LASA  604 (711)
Q Consensus       531 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~--~~h~~~I~~la~spdg~~----Lasg  604 (711)
                      +++++.+..+..+. .+.++.+.  +..+++++.++.+++||+.........  ..+...+.++++.+++..    +++|
T Consensus       158 ~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (368)
T 3mmy_A          158 TRSSNPMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG  234 (368)
T ss_dssp             SSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred             CCCCcEEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe
Confidence            99999998888765 56666665  458999999999999999877544332  234566777777776655    9999


Q ss_pred             eCCCcEEEEECCCC---eEEEEeeCCCC------------CEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcccc
Q psy14440        605 GGDGNVHMWDLSNG---HLLTLLTGHTD------------VVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEV  669 (711)
Q Consensus       605 s~Dg~I~iwDl~sg---~~i~~l~~h~~------------~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~  669 (711)
                      +.||.|++||+..+   ..+..+.+|..            .|++++|++++++|++|+.||.|++||+.+          
T Consensus       235 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~----------  304 (368)
T 3mmy_A          235 SIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA----------  304 (368)
T ss_dssp             ETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT----------
T ss_pred             cCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC----------
Confidence            99999999999987   56777787775            799999999999999999999999999864          


Q ss_pred             ccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        670 NLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       670 ~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                                   ..++..+..+..+|.+++|++++.+||
T Consensus       305 -------------~~~~~~~~~~~~~v~~~~~s~~g~~l~  331 (368)
T 3mmy_A          305 -------------RTKLKTSEQLDQPISACCFNHNGNIFA  331 (368)
T ss_dssp             -------------TEEEEECCCCSSCEEEEEECTTSSCEE
T ss_pred             -------------CcEEEEecCCCCCceEEEECCCCCeEE
Confidence                         234566788899999999999999988

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-34  Score=342.57  Aligned_cols=251  Identities=25%  Similarity=0.351  Sum_probs=221.8

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      ..+.+|.+.|+|++|+++|++||+|+.||.|+||++.+                             .++.....+.+|.
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~-----------------------------~~~~~~~~l~~h~   53 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-----------------------------ETHKLIDTLTGHE   53 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEET-----------------------------TEEEEEEEECCCS
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCC-----------------------------CCCccceeccCCc
Confidence            45789999999999999999999999999999999742                             1334567788999


Q ss_pred             CCEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCEEEEEEcCC--CCEEEEEECCCeEEEEECCCC
Q psy14440        461 GPVRKLSFSPD--RSLLLSCSQDNTIRLWSLLLWR--CLVVYKGHGHPVWDIKFSPH--GYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       461 ~~V~~l~fspd--g~~L~s~s~Dg~V~iwdl~t~~--~~~~~~~h~~~V~~v~~sp~--g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      +.|++++|+++  +++|++|+.||+|++||+.+++  .+..+.+|...|++++|+|+  +.++++|+.||+|++||++++
T Consensus        54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~  133 (753)
T 3jro_A           54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  133 (753)
T ss_dssp             SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred             CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence            99999999988  9999999999999999999887  77788899999999999999  999999999999999999877


Q ss_pred             --ceeEEeecCCCCeeEEEEcC-------------CCCEEEEEEcCCcEEEEECCCC----cEEEEeeCCCCCeEEEEEe
Q psy14440        535 --HPLRLFVGHYSDVDCVQFHP-------------NSNYVATGSSDRTIRLWDCVTG----SHVRLLTGHKAPVYALSFS  595 (711)
Q Consensus       535 --~~~~~~~~h~~~V~~v~~sp-------------~~~~latgs~Dg~I~iwD~~~~----~~v~~~~~h~~~I~~la~s  595 (711)
                        .....+.+|...|.+++|+|             ++.+|++|+.||+|++||++++    ..+..+.+|.+.|++++|+
T Consensus       134 ~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s  213 (753)
T 3jro_A          134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS  213 (753)
T ss_dssp             SCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred             CCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec
Confidence              34556778999999999999             5899999999999999999887    5667788999999999999


Q ss_pred             cC---CCEEEEEeCCCcEEEEECCCCe-----EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        596 VC---GRFLASAGGDGNVHMWDLSNGH-----LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       596 pd---g~~Lasgs~Dg~I~iwDl~sg~-----~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      |+   |++|++|+.||.|++||+.+++     .+....+|.+.|++++|+++|++|++|+.||.|++||+...
T Consensus       214 p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          214 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             cCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            99   9999999999999999998864     33334568889999999999999999999999999999853

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2e-33  Score=301.61  Aligned_cols=253  Identities=18%  Similarity=0.212  Sum_probs=221.2

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      +..++.+|...|++++|++++++|++|+.||.|++|++.+.+.                             .....+.+
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------------------------~~~~~~~~   94 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW-----------------------------KPTLVILR   94 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE-----------------------------EEEEECCC
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee-----------------------------eeeEEeec
Confidence            5667889999999999999999999999999999999854321                             12334567


Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---EEE-EEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECC--
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR---CLV-VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATD--  532 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~---~~~-~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~--  532 (711)
                      |.+.|.+++|++++++|++|+.||.|++||+....   ... ...+|...|.+++|++++++|++++.||.|++||++  
T Consensus        95 ~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  174 (372)
T 1k8k_C           95 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  174 (372)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccc
Confidence            89999999999999999999999999999998765   233 336789999999999999999999999999999953  


Q ss_pred             ----------------CCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEec
Q psy14440        533 ----------------SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSV  596 (711)
Q Consensus       533 ----------------~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~sp  596 (711)
                                      .++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.+|...|.+++|++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  254 (372)
T 1k8k_C          175 EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT  254 (372)
T ss_dssp             TTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE
T ss_pred             cccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEec
Confidence                            6778888889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCC--CeE--------------------------------E------EEe-eCCCCCEEEEE
Q psy14440        597 CGRFLASAGGDGNVHMWDLSN--GHL--------------------------------L------TLL-TGHTDVVRALC  635 (711)
Q Consensus       597 dg~~Lasgs~Dg~I~iwDl~s--g~~--------------------------------i------~~l-~~h~~~V~sl~  635 (711)
                      +|++|++| .||.|++||+.+  ++.                                .      ..+ .+|.+.|++++
T Consensus       255 ~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  333 (372)
T 1k8k_C          255 ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQIS  333 (372)
T ss_dssp             TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEE
T ss_pred             CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeE
Confidence            99998888 899999999987  531                                1      223 48999999999


Q ss_pred             Ee-CCC---CEEEEEeCCCcEEEEeCCCCC
Q psy14440        636 FS-RDG---NILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       636 fs-pdg---~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      |+ ++|   ++|++|+.||+|++||+.+..
T Consensus       334 ~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          334 VLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             EEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             EecCCCcceeeEEEecCCCceEEEEecChh
Confidence            76 676   999999999999999987543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-32  Score=292.31  Aligned_cols=267  Identities=17%  Similarity=0.248  Sum_probs=240.6

Q ss_pred             CCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q psy14440        418 PQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV  497 (711)
Q Consensus       418 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~  497 (711)
                      ...+..+.++.+...+++++.++.|++||..+++....+.+|.+.|++++|++++++|++++.||+|++||+.+++.+..
T Consensus        32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  111 (369)
T 3zwl_B           32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT  111 (369)
T ss_dssp             SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            34455566667777888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCEEEEEEcCCCCEEEEEECC-----CeEEEEECCCCc-----------eeEEeecCCC--CeeEEEEcCCCCEE
Q psy14440        498 YKGHGHPVWDIKFSPHGYYFASAGHD-----RMARLWATDSYH-----------PLRLFVGHYS--DVDCVQFHPNSNYV  559 (711)
Q Consensus       498 ~~~h~~~V~~v~~sp~g~~l~sgs~D-----g~i~lwd~~~~~-----------~~~~~~~h~~--~V~~v~~sp~~~~l  559 (711)
                      +. +...|.+++|++++.++++++.+     +.|++||+....           .+..+..|..  .+.+++|++++++|
T Consensus       112 ~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  190 (369)
T 3zwl_B          112 WK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI  190 (369)
T ss_dssp             EE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEE
T ss_pred             ee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEE
Confidence            88 89999999999999999999999     999999987653           3445556666  89999999999999


Q ss_pred             EEEEcCCcEEEEECCC-CcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeC
Q psy14440        560 ATGSSDRTIRLWDCVT-GSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSR  638 (711)
Q Consensus       560 atgs~Dg~I~iwD~~~-~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fsp  638 (711)
                      ++|+.||.|++||+++ ++.+..+..|...|.+++|++++++|++++.||.|++||+.+++.+..+. +...+.+++|++
T Consensus       191 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~  269 (369)
T 3zwl_B          191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP  269 (369)
T ss_dssp             EEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS
T ss_pred             EEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC
Confidence            9999999999999999 78889999999999999999999999999999999999999999998888 778899999999


Q ss_pred             CCCEEEEEeCCC--------------cEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccC
Q psy14440        639 DGNILASSGQDC--------------SVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRR  704 (711)
Q Consensus       639 dg~~Lasgs~Dg--------------~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~  704 (711)
                      +++++++++.++              .|++||+..                       ...+..+..|...|.+++|+++
T Consensus       270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-----------------------~~~~~~~~~~~~~v~~~~~s~~  326 (369)
T 3zwl_B          270 LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-----------------------EEEIGRVQGHFGPLNTVAISPQ  326 (369)
T ss_dssp             SSSEEEEEECCC-------------CEEEEEETTT-----------------------CCEEEEEECCSSCEEEEEECTT
T ss_pred             CCceEEEeecCCCceEEEEecCCCcceeEEEecCC-----------------------CcchhheecccCcEEEEEECCC
Confidence            999999999998              677777643                       3445667889999999999999


Q ss_pred             Ceeee
Q psy14440        705 NILLR  709 (711)
Q Consensus       705 n~lla  709 (711)
                      +.+|+
T Consensus       327 ~~~l~  331 (369)
T 3zwl_B          327 GTSYA  331 (369)
T ss_dssp             SSEEE
T ss_pred             CCEEE
Confidence            99887

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.8e-33  Score=308.05  Aligned_cols=271  Identities=18%  Similarity=0.270  Sum_probs=232.6

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee-----------eeccCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLK-----------AMKSSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~-----------~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      ..+.+..|++++++||+|+.||.|++|++.+.+..           .+.++++...++.++.++.|++||..+++....+
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  177 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL  177 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence            44566688999999999999999999998765433           3445566777888999999999999999999999


Q ss_pred             ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec---CCCCEEEEE---------------------EcC
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG---HGHPVWDIK---------------------FSP  512 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~---h~~~V~~v~---------------------~sp  512 (711)
                      .+|.+.|++++|++++++|++|+.||+|++||+.+++.+..+..   |...|.+++                     |++
T Consensus       178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~  257 (420)
T 3vl1_A          178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT  257 (420)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence            99999999999999999999999999999999999999999875   344455554                     578


Q ss_pred             CCCEEEEEECCCeEEEEECCCCceeEEee-cCCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCcE-EEEeeC-CCCC
Q psy14440        513 HGYYFASAGHDRMARLWATDSYHPLRLFV-GHYSDVDCVQFHPNSN-YVATGSSDRTIRLWDCVTGSH-VRLLTG-HKAP  588 (711)
Q Consensus       513 ~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~-~latgs~Dg~I~iwD~~~~~~-v~~~~~-h~~~  588 (711)
                      ++++|++|+.||.|++||+++++.+..+. +|...|.+++|+|++. +|++|+.||.|++||+++++. +..+.+ |...
T Consensus       258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~  337 (420)
T 3vl1_A          258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP  337 (420)
T ss_dssp             TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC
Confidence            89999999999999999999988777664 5888999999999998 999999999999999998854 677766 6777


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEECCCC---------eEEEEeeCCCCCEEEEEEeCCCC---EEEEEeCCCcEEEEe
Q psy14440        589 VYALSFSVCGRFLASAGGDGNVHMWDLSNG---------HLLTLLTGHTDVVRALCFSRDGN---ILASSGQDCSVKLWD  656 (711)
Q Consensus       589 I~~la~spdg~~Lasgs~Dg~I~iwDl~sg---------~~i~~l~~h~~~V~sl~fspdg~---~Lasgs~Dg~V~iWd  656 (711)
                      |+++.+ +++++|++|+.||.|++||+...         .....+.+|.+.|.+++|++++.   .|+++|.+|.+.+|+
T Consensus       338 v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~  416 (420)
T 3vl1_A          338 INNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN  416 (420)
T ss_dssp             EEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred             ceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence            888855 57899999999999999998763         12234567888999999999999   788888899999999


Q ss_pred             CCC
Q psy14440        657 FAK  659 (711)
Q Consensus       657 l~~  659 (711)
                      +.+
T Consensus       417 ~~~  419 (420)
T 3vl1_A          417 LSN  419 (420)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=287.96  Aligned_cols=266  Identities=24%  Similarity=0.421  Sum_probs=230.6

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee-------------eeccCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKLK-------------AMKSSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       390 V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~-------------~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      +++++||+++ +||+|. |++|+|||+.++++.             .+.++.+...++.++.|+.|++|+..+++.+..+
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            5789999886 888875 899999999876532             3445566778889999999999999999999999


Q ss_pred             ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW-RCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH  535 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~-~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~  535 (711)
                      .+|...+.++++  ++..+++++.++.+++|+.... ..+..+.+|...+.++.|+++++++++++.||+|++||+++++
T Consensus       106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred             cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence            999999887766  5679999999999999999765 5567788999999999999999999999999999999998765


Q ss_pred             e----eEEeecCCCCeeEEEEcCCCCEE---EEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEe--C
Q psy14440        536 P----LRLFVGHYSDVDCVQFHPNSNYV---ATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAG--G  606 (711)
Q Consensus       536 ~----~~~~~~h~~~V~~v~~sp~~~~l---atgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs--~  606 (711)
                      .    ......+.+.|.++++++++..+   ++++.+++|++||...+....... +...+..++|+++++.+++++  .
T Consensus       184 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~  262 (318)
T 4ggc_A          184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFA  262 (318)
T ss_dssp             TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTT
T ss_pred             ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcC
Confidence            3    44556788899999999976533   356678999999999888766654 777899999999999888765  7


Q ss_pred             CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        607 DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       607 Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      ||.|+|||+.+++.+..+.+|.+.|++++|+++|++|+|||.||+|+|||+..+
T Consensus       263 d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             TCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            899999999999999999999999999999999999999999999999999753

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.1e-33  Score=304.91  Aligned_cols=279  Identities=14%  Similarity=0.205  Sum_probs=230.5

Q ss_pred             ceeeeccCccccccccccCCcEEEEEecCCCe------eEEEeecccCCEEEEEEcCC----C---CEEEEEeCCCeEEE
Q psy14440        420 KLKAMKSSDQLQDIEMECDDILVRIMDERNAE------TTRTLVGHEGPVRKLSFSPD----R---SLLLSCSQDNTIRL  486 (711)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~l~~h~~~V~~l~fspd----g---~~L~s~s~Dg~V~i  486 (711)
                      .+..+.+++  ..++.++.++.|++|+..+++      ....+.+|...|++++|+++    +   ++|++++.||+|++
T Consensus        18 ~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i   95 (397)
T 1sq9_A           18 DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF   95 (397)
T ss_dssp             CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred             CeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence            344444444  678888999999999998887      78889999999999999999    9   99999999999999


Q ss_pred             EECCCCeE-----EEEEecC-----CCCEEEEEEc----CCCCE-EEEEECCCeEEEEECCC------CceeE-----Ee
Q psy14440        487 WSLLLWRC-----LVVYKGH-----GHPVWDIKFS----PHGYY-FASAGHDRMARLWATDS------YHPLR-----LF  540 (711)
Q Consensus       487 wdl~t~~~-----~~~~~~h-----~~~V~~v~~s----p~g~~-l~sgs~Dg~i~lwd~~~------~~~~~-----~~  540 (711)
                      ||+.+++.     +..+..|     ...|++++|+    +++.+ |++++.||.|++||+++      ++.+.     .+
T Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (397)
T 1sq9_A           96 YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL  175 (397)
T ss_dssp             EEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEE
T ss_pred             EEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCccee
Confidence            99988876     8888888     5999999999    99999 99999999999999998      66665     66


Q ss_pred             e-------cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC---C---CCCeEEEEEecCCCEEEEEeCC
Q psy14440        541 V-------GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG---H---KAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       541 ~-------~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~---h---~~~I~~la~spdg~~Lasgs~D  607 (711)
                      .       .|...|.+++|+|++ +|++|+.||.|++||+++++.+..+.+   |   ...|.+++|++++++|++|+.|
T Consensus       176 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d  254 (397)
T 1sq9_A          176 QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS  254 (397)
T ss_dssp             EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred             eeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecC
Confidence            4       488999999999999 999999999999999999999999998   9   9999999999999999999999


Q ss_pred             ---CcEEEEECCCCeEEEEeeC-------------CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcccc--
Q psy14440        608 ---GNVHMWDLSNGHLLTLLTG-------------HTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEV--  669 (711)
Q Consensus       608 ---g~I~iwDl~sg~~i~~l~~-------------h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~--  669 (711)
                         |.|++||+.+++.+..+.+             |...|.+++|++++++|++|+.||.|+|||+............  
T Consensus       255 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  334 (397)
T 1sq9_A          255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD  334 (397)
T ss_dssp             TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG
T ss_pred             CCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccC
Confidence               9999999999999999998             9999999999999999999999999999999764321110000  


Q ss_pred             ccccccccccccccceeeecccCCcceEEEEEccCC
Q psy14440        670 NLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRN  705 (711)
Q Consensus       670 ~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n  705 (711)
                      ...+..+    ...........|..+|.+++|++++
T Consensus       335 ~~~~~~~----~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          335 DIEIEED----ILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             GCSSGGG----CCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             cccchhh----hhccccccccccCCceeEEEecccc
Confidence            0000000    0000001122348899999999997

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.2e-33  Score=310.72  Aligned_cols=263  Identities=27%  Similarity=0.469  Sum_probs=228.4

Q ss_pred             CceEEEEEecCCCceEEEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEE
Q psy14440        376 PSIACYTLLNARQQVTCAEISED-VSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTR  454 (711)
Q Consensus       376 ps~~~~tl~~h~~~V~~l~fs~d-g~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  454 (711)
                      +.+......+|.+.|++++|+++ +.+||+|+.||.|+||++........                     .........
T Consensus       117 ~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------------------~~~~~~~~~  175 (430)
T 2xyi_A          117 GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------------------PSGECQPDL  175 (430)
T ss_dssp             -CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------------------TTCCCCCSE
T ss_pred             CceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------------------ccccCCCcE
Confidence            44556778899999999999997 78999999999999999864211100                     001234566


Q ss_pred             EeecccCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeE-------EEEEecCCCCEEEEEEcC-CCCEEEEEECCCe
Q psy14440        455 TLVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSLLLWRC-------LVVYKGHGHPVWDIKFSP-HGYYFASAGHDRM  525 (711)
Q Consensus       455 ~l~~h~~~V~~l~fspdg~-~L~s~s~Dg~V~iwdl~t~~~-------~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~  525 (711)
                      .+.+|.+.|++++|++++. +|++|+.||+|++|++.++..       ...+.+|...|.+++|+| ++.+|++++.||.
T Consensus       176 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~  255 (430)
T 2xyi_A          176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK  255 (430)
T ss_dssp             EEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             EecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence            7889999999999999998 999999999999999987322       456778999999999999 7789999999999


Q ss_pred             EEEEECCCC---ceeEEeecCCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCC-CcEEEEeeCCCCCeEEEEEecCCC-
Q psy14440        526 ARLWATDSY---HPLRLFVGHYSDVDCVQFHPNSN-YVATGSSDRTIRLWDCVT-GSHVRLLTGHKAPVYALSFSVCGR-  599 (711)
Q Consensus       526 i~lwd~~~~---~~~~~~~~h~~~V~~v~~sp~~~-~latgs~Dg~I~iwD~~~-~~~v~~~~~h~~~I~~la~spdg~-  599 (711)
                      |++||+++.   +.+..+..|...|++++|+|++. +|++|+.||+|++||+++ +..+..+.+|...|++++|+|+++ 
T Consensus       256 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~  335 (430)
T 2xyi_A          256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET  335 (430)
T ss_dssp             EEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTT
T ss_pred             EEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCC
Confidence            999999987   57778889999999999999887 688999999999999998 567889999999999999999985 


Q ss_pred             EEEEEeCCCcEEEEECCC--------------CeEEEEeeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEeCCC
Q psy14440        600 FLASAGGDGNVHMWDLSN--------------GHLLTLLTGHTDVVRALCFSRDGN-ILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       600 ~Lasgs~Dg~I~iwDl~s--------------g~~i~~l~~h~~~V~sl~fspdg~-~Lasgs~Dg~V~iWdl~~  659 (711)
                      +|++|+.||.|+|||+..              .+.+..+.+|.+.|++++|++++. +|++++.||.|+||++..
T Consensus       336 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            799999999999999987              367888889999999999999999 999999999999999975

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.4e-33  Score=308.53  Aligned_cols=274  Identities=16%  Similarity=0.252  Sum_probs=229.7

Q ss_pred             ceEEEEECCCCCEE-EEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEE
Q psy14440        389 QVTCAEISEDVSIL-AVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLS  467 (711)
Q Consensus       389 ~V~~l~fs~dg~~L-atG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~  467 (711)
                      ...+++++++...+ ++|+.||.|+||++.....                           .......+.+|.+.|++++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~---------------------------~~~~~~~~~~h~~~V~~~~   88 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGR---------------------------VDKNVPLVCGHTAPVLDIA   88 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEE---------------------------CCTTCCCBCCCSSCEEEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCC---------------------------CCCCCceEecCCCCEEEEE
Confidence            45568888887544 4578899999999853210                           0112345678999999999


Q ss_pred             EcC-CCCEEEEEeCCCeEEEEECCCC-------eEEEEEecCCCCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceeE
Q psy14440        468 FSP-DRSLLLSCSQDNTIRLWSLLLW-------RCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSYHPLR  538 (711)
Q Consensus       468 fsp-dg~~L~s~s~Dg~V~iwdl~t~-------~~~~~~~~h~~~V~~v~~sp~g-~~l~sgs~Dg~i~lwd~~~~~~~~  538 (711)
                      |++ ++++|++|+.||+|++||+.++       +.+..+.+|...|++++|+|++ ++|++|+.||+|++||+++++.+.
T Consensus        89 ~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  168 (402)
T 2aq5_A           89 WCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL  168 (402)
T ss_dssp             ECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             eCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE
Confidence            999 9999999999999999999887       6678899999999999999998 699999999999999999999999


Q ss_pred             Ee--ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEe-eCCCCC-eEEEEEecCCCEEEEE---eCCCcEE
Q psy14440        539 LF--VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLL-TGHKAP-VYALSFSVCGRFLASA---GGDGNVH  611 (711)
Q Consensus       539 ~~--~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~-~~h~~~-I~~la~spdg~~Lasg---s~Dg~I~  611 (711)
                      .+  .+|...|.+++|+|++++|++|+.||+|++||+++++.+..+ .+|.+. +.+++|+++|++|++|   +.||.|+
T Consensus       169 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~  248 (402)
T 2aq5_A          169 TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVA  248 (402)
T ss_dssp             EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred             EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEE
Confidence            98  789999999999999999999999999999999999999998 788776 8999999999999999   7999999


Q ss_pred             EEECCCCeE-EEEee-CCCCCEEEEEEeCCCCEEEE-EeCCCcEEEEeCCCCCCccCccccccccccccccccccceeee
Q psy14440        612 MWDLSNGHL-LTLLT-GHTDVVRALCFSRDGNILAS-SGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRS  688 (711)
Q Consensus       612 iwDl~sg~~-i~~l~-~h~~~V~sl~fspdg~~Las-gs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  688 (711)
                      +||+++++. +.... .|...|.+++|++++++|++ |+.||.|++||+.....                   ....+..
T Consensus       249 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~-------------------~~~~l~~  309 (402)
T 2aq5_A          249 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP-------------------FLHYLSM  309 (402)
T ss_dssp             EEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT-------------------CEEEEEE
T ss_pred             EEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc-------------------ceEeecc
Confidence            999998754 33333 56778999999999999875 55799999999975321                   0112233


Q ss_pred             cccCCcceEEEEEccCCeeee
Q psy14440        689 YKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       689 ~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      +. +..+|.+++|++++.+++
T Consensus       310 ~~-~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          310 FS-SKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             EC-CSSCCSEEEECCGGGSCG
T ss_pred             cc-cCCcccceEEecccccce
Confidence            33 567899999999988876

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-34  Score=323.93  Aligned_cols=259  Identities=11%  Similarity=0.090  Sum_probs=214.0

Q ss_pred             EEEEecCCCceEEEEECCC------CCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeE
Q psy14440        380 CYTLLNARQQVTCAEISED------VSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETT  453 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~d------g~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  453 (711)
                      ..++.+|.+.|++++|+|+      +.+||+|+.||+|+||++........                ..  .  ......
T Consensus       200 ~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~----------------~~--~--~~~~p~  259 (524)
T 2j04_B          200 VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH----------------VF--K--MCEKPS  259 (524)
T ss_dssp             EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS----------------EE--E--CCCSCS
T ss_pred             EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc----------------cc--e--eecCce
Confidence            4567788899999999997      57999999999999999965431100                00  0  011223


Q ss_pred             EEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEEecCCCCEEEE--EEcCCC-CEEEEEECCCeEEEE
Q psy14440        454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR-CLVVYKGHGHPVWDI--KFSPHG-YYFASAGHDRMARLW  529 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~-~~~~~~~h~~~V~~v--~~sp~g-~~l~sgs~Dg~i~lw  529 (711)
                      ..+.+|.+.|++++|++++ .|++|+.||+|++||+.++. ....+.+|...|++|  +|+++| ++|++|+.|++|++|
T Consensus       260 ~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklW  338 (524)
T 2j04_B          260 LTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF  338 (524)
T ss_dssp             EEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEE
T ss_pred             EEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEE
Confidence            5678999999999999864 89999999999999998764 445688999999999  578887 899999999999999


Q ss_pred             ECCCCceeEEeecCCC--CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC
Q psy14440        530 ATDSYHPLRLFVGHYS--DVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       530 d~~~~~~~~~~~~h~~--~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D  607 (711)
                      |+++++.+..+.+|..  .|.+++|+|++..+++++.|++|++||++++.++..+.+|.+.|++++|+|+|++|++|+.|
T Consensus       339 D~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D  418 (524)
T 2j04_B          339 NPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD  418 (524)
T ss_dssp             CGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETT
T ss_pred             ECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECC
Confidence            9998888777777764  58899999999999999999999999999999989999999999999999999999999999


Q ss_pred             CcEEEEECCC--------------------------------------------CeEEEEeeCCCCCEEEEEEeCCC---
Q psy14440        608 GNVHMWDLSN--------------------------------------------GHLLTLLTGHTDVVRALCFSRDG---  640 (711)
Q Consensus       608 g~I~iwDl~s--------------------------------------------g~~i~~l~~h~~~V~sl~fspdg---  640 (711)
                      |+|++||+..                                            |..+..+.+|.+.|++++|+|++   
T Consensus       419 gtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~  498 (524)
T 2j04_B          419 GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGG  498 (524)
T ss_dssp             TEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTT
T ss_pred             CEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCcc
Confidence            9999997421                                            12233455788899999999995   


Q ss_pred             CEEEEEeCCCcEEEEeCCC
Q psy14440        641 NILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       641 ~~Lasgs~Dg~V~iWdl~~  659 (711)
                      .+||+|+.||+||||++..
T Consensus       499 ~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          499 KCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             TEEEEECTTSEEEEEECSC
T ss_pred             HHHHhhccCceEEEEEccc
Confidence            4999999999999999875

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.5e-32  Score=320.79  Aligned_cols=285  Identities=27%  Similarity=0.379  Sum_probs=227.4

Q ss_pred             CceeeeccCcc-ccccccccCCcEEEEEecCC-----CeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q psy14440        419 QKLKAMKSSDQ-LQDIEMECDDILVRIMDERN-----AETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW  492 (711)
Q Consensus       419 ~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~-----~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~  492 (711)
                      ..+..+..+.+ ...++.++.|+.|++|+..+     +...+.+.+|.+.|.+++|++++++|++|+.||+|+|||+.++
T Consensus       383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~  462 (694)
T 3dm0_A          383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG  462 (694)
T ss_dssp             SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            33444444433 35678899999999999764     3456788999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEe---ecCCCCeeEEEEcCCC--CEEEEEEcCCc
Q psy14440        493 RCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF---VGHYSDVDCVQFHPNS--NYVATGSSDRT  567 (711)
Q Consensus       493 ~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~---~~h~~~V~~v~~sp~~--~~latgs~Dg~  567 (711)
                      .++..+.+|...|++++|++++++|++|+.|++|++||..........   .+|...|.|++|+|++  .+|++|+.|++
T Consensus       463 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~  542 (694)
T 3dm0_A          463 VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT  542 (694)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred             cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCe
Confidence            999999999999999999999999999999999999998765433332   3688899999999986  68999999999


Q ss_pred             EEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEe
Q psy14440        568 IRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSG  647 (711)
Q Consensus       568 I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs  647 (711)
                      |++||++++++...+.+|.+.|++++|+|+|++|++|+.||+|+|||+.+++.+..+.. ...|.+++|++++.+|++++
T Consensus       543 v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~  621 (694)
T 3dm0_A          543 VKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAAT  621 (694)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEE
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999888765 46799999999999888766


Q ss_pred             CCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        648 QDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       648 ~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                       |+.|+|||+.+........   ......... ...........+...|.+++|++++.+|+
T Consensus       622 -~~~i~iwd~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~spdg~~l~  678 (694)
T 3dm0_A          622 -EHGIKIWDLESKSIVEDLK---VDLKAEAEK-ADNSGPAATKRKVIYCTSLNWSADGSTLF  678 (694)
T ss_dssp             -TTEEEEEETTTTEEEEEEC---CCCC-----------------CCCCEEEEEECTTSSEEE
T ss_pred             -CCCEEEEECCCCCChhhhc---ccccccccc-ccccccccCCceeEEeeeEEEcCCCCEEE
Confidence             6679999998643211100   000000000 00000001122233578999999999998

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.2e-33  Score=299.82  Aligned_cols=270  Identities=18%  Similarity=0.282  Sum_probs=231.8

Q ss_pred             CceeeeccCc----cccccccccCCcEEEEEecCCCeeEEEeec-----ccCCEEEEEEcCC----CCEEEEEeCCCeEE
Q psy14440        419 QKLKAMKSSD----QLQDIEMECDDILVRIMDERNAETTRTLVG-----HEGPVRKLSFSPD----RSLLLSCSQDNTIR  485 (711)
Q Consensus       419 ~~~~~~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~-----h~~~V~~l~fspd----g~~L~s~s~Dg~V~  485 (711)
                      ..+..+.+++    ....+..++.++.|++|+..+++....+..     |.+.|++++|+++    +.+|++|+.||+|+
T Consensus        19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~   98 (366)
T 3k26_A           19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR   98 (366)
T ss_dssp             SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred             CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence            3444444543    233456666677999999988877777664     5578999999998    67999999999999


Q ss_pred             EEECCCCeEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCceeEEe---ecCCCCeeEEEEcCCCCEEEE
Q psy14440        486 LWSLLLWRCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMARLWATDSYHPLRLF---VGHYSDVDCVQFHPNSNYVAT  561 (711)
Q Consensus       486 iwdl~t~~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~~~~~~~~~~---~~h~~~V~~v~~sp~~~~lat  561 (711)
                      +||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||+|++||+++++.+..+   .+|...|.+++|+|++++|++
T Consensus        99 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  178 (366)
T 3k26_A           99 IINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMS  178 (366)
T ss_dssp             EECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEE
T ss_pred             EEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEE
Confidence            999999999999999999999999999 8999999999999999999999988888   689999999999999999999


Q ss_pred             EEcCCcEEEEECCCCcEEEEee----------------------------CCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy14440        562 GSSDRTIRLWDCVTGSHVRLLT----------------------------GHKAPVYALSFSVCGRFLASAGGDGNVHMW  613 (711)
Q Consensus       562 gs~Dg~I~iwD~~~~~~v~~~~----------------------------~h~~~I~~la~spdg~~Lasgs~Dg~I~iw  613 (711)
                      |+.||.|++||+++++.+..+.                            +|...|.+++|+  +++|++++.||.|++|
T Consensus       179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~w  256 (366)
T 3k26_A          179 CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCW  256 (366)
T ss_dssp             EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEE
T ss_pred             ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEE
Confidence            9999999999999876544333                            499999999999  7899999999999999


Q ss_pred             ECCCCe--------------EEEEeeCCCCCEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCCCccCcccccccccccc
Q psy14440        614 DLSNGH--------------LLTLLTGHTDVVRALCFSRD--GNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADI  677 (711)
Q Consensus       614 Dl~sg~--------------~i~~l~~h~~~V~sl~fspd--g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~  677 (711)
                      |+.+++              .+..+.+|...|++++|+++  +++|++|+.||.|++||+.....               
T Consensus       257 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~---------------  321 (366)
T 3k26_A          257 KPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP---------------  321 (366)
T ss_dssp             EESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG---------------
T ss_pred             eCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC---------------
Confidence            998763              48888999999999999999  99999999999999999976321               


Q ss_pred             ccccccceeeecccC--CcceEEEEEccCCeeee
Q psy14440        678 KNSSLAYLVRSYKTK--ASPLLHLIFSRRNILLR  709 (711)
Q Consensus       678 ~~~~~~~~l~~~~t~--~~pV~~v~Fs~~n~lla  709 (711)
                          ....+..+..+  ..+|.+++|++++.+|+
T Consensus       322 ----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  351 (366)
T 3k26_A          322 ----HKAKCTTLTHHKCGAAIRQTSFSRDSSILI  351 (366)
T ss_dssp             ----GGCEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred             ----ccccceEEcccccCCceEEEEeCCCCCeEE
Confidence                11233456666  78999999999999887

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=8.8e-34  Score=300.76  Aligned_cols=236  Identities=22%  Similarity=0.359  Sum_probs=198.6

Q ss_pred             EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCEEEEEEcC--CCCEEEEEECCCeEEEEE
Q psy14440        455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR--CLVVYKGHGHPVWDIKFSP--HGYYFASAGHDRMARLWA  530 (711)
Q Consensus       455 ~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~--~~~~~~~h~~~V~~v~~sp--~g~~l~sgs~Dg~i~lwd  530 (711)
                      .+.+|.+.|++++|+++|++|++|+.|++|++||+.++.  .+..+.+|...|++++|++  ++++|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            456899999999999999999999999999999998765  4678899999999999986  489999999999999999


Q ss_pred             CCCC--ceeEEeecCCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCcE---EEEeeCCCCCeEEEEEecC------
Q psy14440        531 TDSY--HPLRLFVGHYSDVDCVQFHPN--SNYVATGSSDRTIRLWDCVTGSH---VRLLTGHKAPVYALSFSVC------  597 (711)
Q Consensus       531 ~~~~--~~~~~~~~h~~~V~~v~~sp~--~~~latgs~Dg~I~iwD~~~~~~---v~~~~~h~~~I~~la~spd------  597 (711)
                      ++++  ..+..+.+|...|.+++|+|+  +.+|++|+.|++|++||++++..   ...+.+|...|.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            9876  456678899999999999997  78999999999999999987642   3456789999999999997      


Q ss_pred             -----------CCEEEEEeCCCcEEEEECCCC---eEEEEeeCCCCCEEEEEEeCCC----CEEEEEeCCCcEEEEeCCC
Q psy14440        598 -----------GRFLASAGGDGNVHMWDLSNG---HLLTLLTGHTDVVRALCFSRDG----NILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       598 -----------g~~Lasgs~Dg~I~iwDl~sg---~~i~~l~~h~~~V~sl~fspdg----~~Lasgs~Dg~V~iWdl~~  659 (711)
                                 +++|++|+.||+|++||+..+   +.+..+.+|.+.|++++|+|++    ++|++|+.||+|+|||+..
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence                       478999999999999999765   5677889999999999999986    8999999999999999875


Q ss_pred             CCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        660 LSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      .....                   .....+..+...|.+|+|++++.+||
T Consensus       248 ~~~~~-------------------~~~~~~~~~~~~v~~v~~sp~g~~la  278 (316)
T 3bg1_A          248 ASSNT-------------------WSPKLLHKFNDVVWHVSWSITANILA  278 (316)
T ss_dssp             TTCCC-------------------CBCCEEEECSSCEEEEEECTTTCCEE
T ss_pred             ccccc-------------------hhhhhhhcCCCcEEEEEEcCCCCEEE
Confidence            32100                   00112344678999999999999887

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-32  Score=303.41  Aligned_cols=301  Identities=14%  Similarity=0.108  Sum_probs=230.6

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc---eeee-ccCcc-------------ccccccccCCcE---------
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQK---LKAM-KSSDQ-------------LQDIEMECDDIL---------  441 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~---~~~~-~~~~~-------------~~~l~~~~~d~~---------  441 (711)
                      ..++|++|++||++|+++ .++.|++|++.+++   .... .....             ...+.....+..         
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            578999999999977666 57899999987766   2211 11100             000000000000         


Q ss_pred             EEEEecCCCeeEEEeecccCCEEEEEEcCCCCEE-EEEeCCCeEEEEECC--CCeEEEEEe--cCCCCEEEEEEcCCCCE
Q psy14440        442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLL-LSCSQDNTIRLWSLL--LWRCLVVYK--GHGHPVWDIKFSPHGYY  516 (711)
Q Consensus       442 i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L-~s~s~Dg~V~iwdl~--t~~~~~~~~--~h~~~V~~v~~sp~g~~  516 (711)
                      +.--............+|.+.|++++|++++++| ++|+.||+|++||+.  +++++..+.  .|...|.+++|+|++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence            0000000001112334678899999999999996 899999999999999  888888876  56789999999999999


Q ss_pred             EEEEECCCeEEEEECCCCceeE----EeecCCCCeeEEEEcCC---CCEEEEEEcCCcEEEEECCCCcEEEE-eeCCCCC
Q psy14440        517 FASAGHDRMARLWATDSYHPLR----LFVGHYSDVDCVQFHPN---SNYVATGSSDRTIRLWDCVTGSHVRL-LTGHKAP  588 (711)
Q Consensus       517 l~sgs~Dg~i~lwd~~~~~~~~----~~~~h~~~V~~v~~sp~---~~~latgs~Dg~I~iwD~~~~~~v~~-~~~h~~~  588 (711)
                      |++|+.||.+++|++.++....    .+.+|...|.+++|+|+   +++|++|+.|++|++||+.+++.+.. +.+|.+.
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~  243 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF  243 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence            9999999999999998876554    77889999999999999   99999999999999999999998887 5589999


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCC-------------------------CCCEEEEEEeCCCCEE
Q psy14440        589 VYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGH-------------------------TDVVRALCFSRDGNIL  643 (711)
Q Consensus       589 I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h-------------------------~~~V~sl~fspdg~~L  643 (711)
                      |++++|+ +|++|++|+.||.|++||+.+++.+..+..+                         ...|.+++|++++++|
T Consensus       244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  322 (450)
T 2vdu_B          244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV  322 (450)
T ss_dssp             EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred             eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence            9999999 9999999999999999999999998888632                         3579999999999999


Q ss_pred             EEEe-CCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        644 ASSG-QDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       644 asgs-~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      ++++ .|+.|+|||+.....                  .....+..+..+ ..|.+++|++++++++
T Consensus       323 ~~~~~~d~~i~iw~~~~~~~------------------~~l~~~~~~~~~-~~v~~~~~~~~~~~v~  370 (450)
T 2vdu_B          323 AFFVEATKCIIILEMSEKQK------------------GDLALKQIITFP-YNVISLSAHNDEFQVT  370 (450)
T ss_dssp             EEEETTCSEEEEEEECSSST------------------TCEEEEEEEECS-SCEEEEEEETTEEEEE
T ss_pred             EEEECCCCeEEEEEeccCCC------------------CceeeccEeccC-CceEEEEecCCcEEEE
Confidence            9999 899999999921100                  011334456666 7899999999777766

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=280.63  Aligned_cols=261  Identities=20%  Similarity=0.294  Sum_probs=233.4

Q ss_pred             CCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---e
Q psy14440        417 VPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW---R  493 (711)
Q Consensus       417 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~---~  493 (711)
                      ....+..+.+ .+...++.++.++.|++||..++.....+..|.+.|.+++|++++++|++|+.||.|++|++...   +
T Consensus        17 h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~   95 (313)
T 3odt_A           17 HDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED   95 (313)
T ss_dssp             CSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC
T ss_pred             CCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC
Confidence            3444555555 56677889999999999999999999999999999999999999999999999999999998653   6


Q ss_pred             EEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEE
Q psy14440        494 CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWD  572 (711)
Q Consensus       494 ~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD  572 (711)
                      .+..+.+|...|.+++|  ++.++++++.||.|++||  .+..+..+..|...+.+++|++ +++++++++.||.|++||
T Consensus        96 ~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d  171 (313)
T 3odt_A           96 PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ  171 (313)
T ss_dssp             C-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             cccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence            67788999999999999  577999999999999999  6678888999999999999998 999999999999999999


Q ss_pred             CCCCcEEEEeeC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy14440        573 CVTGSHVRLLTG-HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCS  651 (711)
Q Consensus       573 ~~~~~~v~~~~~-h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~  651 (711)
                        .++.+..+.. |...|.+++|++++. +++|+.||.|++||+++++.+..+.+|.+.|++++|++++ .|++|+.||.
T Consensus       172 --~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~  247 (313)
T 3odt_A          172 --NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT  247 (313)
T ss_dssp             --TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSE
T ss_pred             --cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCE
Confidence              5677778877 999999999999998 8999999999999999999999999999999999999999 5889999999


Q ss_pred             EEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        652 VKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       652 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      |++||+.+.                       ..+..+..+..+|.+++|++++.+++
T Consensus       248 v~iwd~~~~-----------------------~~~~~~~~~~~~i~~~~~~~~~~~~~  282 (313)
T 3odt_A          248 VRIWSKENG-----------------------SLKQVITLPAISIWSVDCMSNGDIIV  282 (313)
T ss_dssp             EEEECTTTC-----------------------CEEEEEECSSSCEEEEEECTTSCEEE
T ss_pred             EEEEECCCC-----------------------ceeEEEeccCceEEEEEEccCCCEEE
Confidence            999998752                       24456777888999999999998776

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.9e-32  Score=322.53  Aligned_cols=246  Identities=22%  Similarity=0.330  Sum_probs=229.6

Q ss_pred             EeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q psy14440        414 WSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR  493 (711)
Q Consensus       414 Wdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~  493 (711)
                      +.-.+..+..+.++++...+++++.++.|++||..+++....+.+|.+.|++++|++++++|++|+.||.|++||+.+++
T Consensus         9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~   88 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE   88 (814)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred             eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            33344556677778888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-ceeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEE
Q psy14440        494 CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY-HPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLW  571 (711)
Q Consensus       494 ~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iw  571 (711)
                      .+..+.+|...|++++|+|++.+|++++.||+|++||++++ .....+.+|...|.+++|+| ++++|++|+.||+|++|
T Consensus        89 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vw  168 (814)
T 3mkq_A           89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW  168 (814)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            99999999999999999999999999999999999999987 66778889999999999999 88999999999999999


Q ss_pred             ECCCCcEEEEeeCCC-CCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC
Q psy14440        572 DCVTGSHVRLLTGHK-APVYALSFSV--CGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       572 D~~~~~~v~~~~~h~-~~I~~la~sp--dg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~  648 (711)
                      |+.++.....+..+. ..+.+++|++  ++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+++|++|++|+.
T Consensus       169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  248 (814)
T 3mkq_A          169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE  248 (814)
T ss_dssp             ETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred             ECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            999988877777655 8999999999  9999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCCC
Q psy14440        649 DCSVKLWDFAK  659 (711)
Q Consensus       649 Dg~V~iWdl~~  659 (711)
                      ||+|++||+.+
T Consensus       249 dg~v~vwd~~~  259 (814)
T 3mkq_A          249 DGTLKIWNSST  259 (814)
T ss_dssp             TSCEEEEETTT
T ss_pred             CCeEEEEECCC
Confidence            99999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-33  Score=303.68  Aligned_cols=246  Identities=18%  Similarity=0.204  Sum_probs=213.0

Q ss_pred             EEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCC--eeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy14440        411 IKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNA--ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWS  488 (711)
Q Consensus       411 I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwd  488 (711)
                      ..++.+....+..+.++++...++.++.++.|++|+..++  +....+.+|.+.|++++|++++++|++|+.||+|++||
T Consensus         4 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C            4 SQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE   83 (377)
T ss_dssp             EEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred             ceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            3466666677788888888889999999999999999888  77888999999999999999999999999999999999


Q ss_pred             CCCCe---EEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc---eeEEeec-CCCCeeEEEEcCCCCEEEE
Q psy14440        489 LLLWR---CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH---PLRLFVG-HYSDVDCVQFHPNSNYVAT  561 (711)
Q Consensus       489 l~t~~---~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~---~~~~~~~-h~~~V~~v~~sp~~~~lat  561 (711)
                      +.++.   ....+.+|...|++++|+|++++|++|+.|++|++||+++++   ....+.+ |...|.+++|+|++++|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~  163 (377)
T 3dwl_C           84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA  163 (377)
T ss_dssp             -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred             cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence            99876   677788899999999999999999999999999999999876   4677777 9999999999999999999


Q ss_pred             EEcCCcEEEEECC------------------CCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE---
Q psy14440        562 GSSDRTIRLWDCV------------------TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL---  620 (711)
Q Consensus       562 gs~Dg~I~iwD~~------------------~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~---  620 (711)
                      |+.||+|++||+.                  .++++..+ +|.+.|++++|+|+|++|++|+.||.|++||+.+++.   
T Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~  242 (377)
T 3dwl_C          164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR  242 (377)
T ss_dssp             EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred             EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence            9999999999985                  35567777 8999999999999999999999999999999999887   


Q ss_pred             -EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        621 -LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       621 -i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                       +..+.+|...|.+++|+++|++|++|+.|+.+ +|+..
T Consensus       243 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          243 ALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             ECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence             78889999999999999999999998766555 77765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-32  Score=292.64  Aligned_cols=240  Identities=21%  Similarity=0.339  Sum_probs=210.4

Q ss_pred             eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEEEEEecCCCCEEEEEEcCC--CCEEEEEECCCeEE
Q psy14440        452 TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL--LWRCLVVYKGHGHPVWDIKFSPH--GYYFASAGHDRMAR  527 (711)
Q Consensus       452 ~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~--t~~~~~~~~~h~~~V~~v~~sp~--g~~l~sgs~Dg~i~  527 (711)
                      ....+.+|.+.|++++|++++++|++|+.||+|++||+.  +++.+..+.+|...|++++|+++  +.+|++|+.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            456678999999999999999999999999999999998  67788889999999999999976  89999999999999


Q ss_pred             EEECCCCc--eeEEeecCCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCc--EEEEeeCCCCCeEEEEEec-----
Q psy14440        528 LWATDSYH--PLRLFVGHYSDVDCVQFHPN--SNYVATGSSDRTIRLWDCVTGS--HVRLLTGHKAPVYALSFSV-----  596 (711)
Q Consensus       528 lwd~~~~~--~~~~~~~h~~~V~~v~~sp~--~~~latgs~Dg~I~iwD~~~~~--~v~~~~~h~~~I~~la~sp-----  596 (711)
                      +||+++++  .+..+.+|...|.+++|+|+  +++|++|+.||+|++||++++.  ....+.+|...|++++|+|     
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence            99999887  77788889999999999999  9999999999999999999873  4556778999999999999     


Q ss_pred             --------CCCEEEEEeCCCcEEEEECCCCe----EEEEeeCCCCCEEEEEEeCC---CCEEEEEeCCCcEEEEeCCCCC
Q psy14440        597 --------CGRFLASAGGDGNVHMWDLSNGH----LLTLLTGHTDVVRALCFSRD---GNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       597 --------dg~~Lasgs~Dg~I~iwDl~sg~----~i~~l~~h~~~V~sl~fspd---g~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                              ++.+|++|+.||.|++||+++++    .+..+.+|.+.|.+++|+++   +++|++|+.||.|++||+....
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence                    69999999999999999998754    56778899999999999999   8999999999999999997633


Q ss_pred             CccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        662 DEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      ..                  ....+.....+...|.+++|++++.+|+
T Consensus       243 ~~------------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~  272 (379)
T 3jrp_A          243 GP------------------WKKTLLKEEKFPDVLWRASWSLSGNVLA  272 (379)
T ss_dssp             SC------------------CEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred             cc------------------ceeeeeccccCCCcEEEEEEcCCCCEEE
Confidence            21                  0112222344778999999999999887

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.5e-32  Score=291.01  Aligned_cols=286  Identities=14%  Similarity=0.197  Sum_probs=231.5

Q ss_pred             CceeeeccCcccccc-ccccC---CcEEEEEecCCCeeEEE-eecccCCEEEEEEcCC---CCEEEEEeCCCeEEEEECC
Q psy14440        419 QKLKAMKSSDQLQDI-EMECD---DILVRIMDERNAETTRT-LVGHEGPVRKLSFSPD---RSLLLSCSQDNTIRLWSLL  490 (711)
Q Consensus       419 ~~~~~~~~~~~~~~l-~~~~~---d~~i~i~d~~~~~~~~~-l~~h~~~V~~l~fspd---g~~L~s~s~Dg~V~iwdl~  490 (711)
                      ..+..+.++++...+ +.++.   ++.|++||..+++.... ..+|.+.|++++|+++   +.+|++|+.||.|++||+.
T Consensus        19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~   98 (357)
T 3i2n_A           19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE   98 (357)
T ss_dssp             SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred             CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence            344555566655444 44544   89999999988876544 3489999999999998   6999999999999999999


Q ss_pred             CCe-EEEEEecCCCCEEEEEE------cCCCCEEEEEECCCeEEEEECCCCc-eeEEeecCCC----CeeEEE----EcC
Q psy14440        491 LWR-CLVVYKGHGHPVWDIKF------SPHGYYFASAGHDRMARLWATDSYH-PLRLFVGHYS----DVDCVQ----FHP  554 (711)
Q Consensus       491 t~~-~~~~~~~h~~~V~~v~~------sp~g~~l~sgs~Dg~i~lwd~~~~~-~~~~~~~h~~----~V~~v~----~sp  554 (711)
                      +++ .+..+.+|...|.+++|      ++++++|++++.||.|++||++++. .+..+..|.+    .+.+++    |++
T Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  178 (357)
T 3i2n_A           99 APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ  178 (357)
T ss_dssp             SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred             CCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC
Confidence            888 88899999999999965      6789999999999999999999886 7777766555    789998    678


Q ss_pred             CCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEec---CCCEEEEEeCCCcEEEEECCCCeEEEEe-----eC
Q psy14440        555 NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSV---CGRFLASAGGDGNVHMWDLSNGHLLTLL-----TG  626 (711)
Q Consensus       555 ~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~sp---dg~~Lasgs~Dg~I~iwDl~sg~~i~~l-----~~  626 (711)
                      ++++|++|+.||.|++||+++++.... ..|...|.+++|+|   ++.+|++|+.||.|++||+++++.+..+     .+
T Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  257 (357)
T 3i2n_A          179 EERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA  257 (357)
T ss_dssp             CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEEC
T ss_pred             CCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCC
Confidence            999999999999999999999987544 56899999999999   9999999999999999999887654443     48


Q ss_pred             CCCCEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCC
Q psy14440        627 HTDVVRALCFSRDGN-ILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRN  705 (711)
Q Consensus       627 h~~~V~sl~fspdg~-~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n  705 (711)
                      |...|++++|++++. +|++|+.||.|++||+.............    ...........+..+..|..+|.+++|++++
T Consensus       258 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  333 (357)
T 3i2n_A          258 HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG----IEMGVAGSVSLLQNVTLSTQPISSLDWSPDK  333 (357)
T ss_dssp             CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS----CCCCCCCEEEEEEEEECCSSCEEEEEECSSS
T ss_pred             CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC----CccccccccceeeccccCCCCeeEEEEcCCC
Confidence            999999999999998 89999999999999998654332111000    0001112345677899999999999999998


Q ss_pred             eeee
Q psy14440        706 ILLR  709 (711)
Q Consensus       706 ~lla  709 (711)
                      .+|+
T Consensus       334 ~~l~  337 (357)
T 3i2n_A          334 RGLC  337 (357)
T ss_dssp             TTEE
T ss_pred             CeEE
Confidence            8764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.7e-32  Score=295.08  Aligned_cols=255  Identities=16%  Similarity=0.250  Sum_probs=227.6

Q ss_pred             cccccccCCcEEEEEecCCCeeEEEeec-ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEE
Q psy14440        431 QDIEMECDDILVRIMDERNAETTRTLVG-HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIK  509 (711)
Q Consensus       431 ~~l~~~~~d~~i~i~d~~~~~~~~~l~~-h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~  509 (711)
                      ..++.++.++.|++|+..+++....+.. |.+.|++++|++++++|++|+.||.|++||+.+++.+..+.+|...|.+++
T Consensus       104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  183 (401)
T 4aez_A          104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLS  183 (401)
T ss_dssp             TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEE
Confidence            3466777899999999999988877776 899999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEECCCeEEEEECC-CCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCC
Q psy14440        510 FSPHGYYFASAGHDRMARLWATD-SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAP  588 (711)
Q Consensus       510 ~sp~g~~l~sgs~Dg~i~lwd~~-~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~  588 (711)
                      |  ++++|++|+.||.|++||++ ....+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|...
T Consensus       184 ~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  261 (401)
T 4aez_A          184 W--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAA  261 (401)
T ss_dssp             E--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSC
T ss_pred             E--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcce
Confidence            9  46799999999999999999 56778889999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCC-EEEEEe--CCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCCCc
Q psy14440        589 VYALSFSVCGR-FLASAG--GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSG--QDCSVKLWDFAKLSDE  663 (711)
Q Consensus       589 I~~la~spdg~-~Lasgs--~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs--~Dg~V~iWdl~~~~~~  663 (711)
                      |.+++|+|++. ++++|+  .||.|++||+.+++.+..+. |...|.+++|++++++|++++  .||.|++||+....  
T Consensus       262 v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~--  338 (401)
T 4aez_A          262 VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG--  338 (401)
T ss_dssp             CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE--
T ss_pred             EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc--
Confidence            99999999764 566654  69999999999999998886 567899999999999999954  89999999986421  


Q ss_pred             cCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        664 VGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                                         ...+..+..|...|.+++|++++.+|+
T Consensus       339 -------------------~~~~~~~~~h~~~v~~~~~s~dg~~l~  365 (401)
T 4aez_A          339 -------------------LTKQVDIPAHDTRVLYSALSPDGRILS  365 (401)
T ss_dssp             -------------------EEEEEEEECCSSCCCEEEECTTSSEEE
T ss_pred             -------------------ceeEEEecCCCCCEEEEEECCCCCEEE
Confidence                               122334667889999999999999887

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.6e-32  Score=294.75  Aligned_cols=262  Identities=15%  Similarity=0.154  Sum_probs=220.0

Q ss_pred             ceeeeccCccc-cccccccCCcEEEEEecCCCeeEEEee--cccCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEE
Q psy14440        420 KLKAMKSSDQL-QDIEMECDDILVRIMDERNAETTRTLV--GHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCL  495 (711)
Q Consensus       420 ~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t~~~~  495 (711)
                      .+..+.++.+. ..++.++.++.|++||..+++....+.  +|.+.|++++|++ ++++|++++.|++|++||+.+ ..+
T Consensus        75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~  153 (383)
T 3ei3_B           75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVI  153 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEE
T ss_pred             CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cce
Confidence            34445555555 678888999999999999887777665  6999999999999 789999999999999999986 555


Q ss_pred             EEEecC---CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCC-EEEEEEcCCcEEEE
Q psy14440        496 VVYKGH---GHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSN-YVATGSSDRTIRLW  571 (711)
Q Consensus       496 ~~~~~h---~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-~latgs~Dg~I~iw  571 (711)
                      ..+..+   ...|.+++|++++.+|++|+.|+.|++||+ +++.+..+.+|...|.+++|+|++. +|++|+.|++|++|
T Consensus       154 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  232 (383)
T 3ei3_B          154 QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLW  232 (383)
T ss_dssp             EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEE
Confidence            566544   478999999999999999999999999999 5778889999999999999999998 99999999999999


Q ss_pred             ECCC----CcEEEEeeCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEeeCCC-----------------C
Q psy14440        572 DCVT----GSHVRLLTGHKAPVYALSFSV-CGRFLASAGGDGNVHMWDLSNGHLLTLLTGHT-----------------D  629 (711)
Q Consensus       572 D~~~----~~~v~~~~~h~~~I~~la~sp-dg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~-----------------~  629 (711)
                      |+++    +.++..+ +|...|++++|+| +|++|++++.||.|++||+++++.+..+.+|.                 +
T Consensus       233 d~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  311 (383)
T 3ei3_B          233 DLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMY  311 (383)
T ss_dssp             EGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSS
T ss_pred             eCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCC
Confidence            9998    6677776 6999999999999 99999999999999999999987766666543                 2


Q ss_pred             CEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeeccc--CCcceEEEEEccCCee
Q psy14440        630 VVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKT--KASPLLHLIFSRRNIL  707 (711)
Q Consensus       630 ~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t--~~~pV~~v~Fs~~n~l  707 (711)
                      .+..++|+++|++  +|+.||+|+|||+.+..                       ++..+..  +...+..++|++++.+
T Consensus       312 ~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~-----------------------~~~~l~~~~~~~~~~~~~~s~~g~~  366 (383)
T 3ei3_B          312 DLIVAGRYPDDQL--LLNDKRTIDIYDANSGG-----------------------LVHQLRDPNAAGIISLNKFSPTGDV  366 (383)
T ss_dssp             SEEEEECBCCTTT--CTTCCCCEEEEETTTCC-----------------------EEEEECBTTBCSCCCEEEECTTSSE
T ss_pred             CceEEEecCCccc--ccCCCCeEEEEecCCCc-----------------------eeeeecCCCCCceEEEEEEecCccE
Confidence            3445666777766  77899999999987522                       2344444  4567777899999999


Q ss_pred             ee
Q psy14440        708 LR  709 (711)
Q Consensus       708 la  709 (711)
                      ||
T Consensus       367 l~  368 (383)
T 3ei3_B          367 LA  368 (383)
T ss_dssp             EE
T ss_pred             EE
Confidence            88

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-32  Score=304.55  Aligned_cols=289  Identities=11%  Similarity=0.164  Sum_probs=222.9

Q ss_pred             CceeeeccCc-cccccccccCCcEEEEEecCC---Ce---eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-
Q psy14440        419 QKLKAMKSSD-QLQDIEMECDDILVRIMDERN---AE---TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL-  490 (711)
Q Consensus       419 ~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~---~~---~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~-  490 (711)
                      ..+..+.++. +...++.++.|+.|++||..+   +.   ....+ +|.+.|++++|++++++|++|+.||+|++||+. 
T Consensus        64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~  142 (437)
T 3gre_A           64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH  142 (437)
T ss_dssp             SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred             CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence            4455666677 777899999999999999765   32   22232 599999999999999999999999999999994 


Q ss_pred             --CCeEEEEEec------------CCCCEEEEE--EcCCCCEEEEEECCCeEEEEECCCCceeEEeec--CCCCeeEEEE
Q psy14440        491 --LWRCLVVYKG------------HGHPVWDIK--FSPHGYYFASAGHDRMARLWATDSYHPLRLFVG--HYSDVDCVQF  552 (711)
Q Consensus       491 --t~~~~~~~~~------------h~~~V~~v~--~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~--h~~~V~~v~~  552 (711)
                        +++......+            +...+.++.  +++++.+|++|+.||+|++||+++++.+..+.+  |...|.+++|
T Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~  222 (437)
T 3gre_A          143 YQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICI  222 (437)
T ss_dssp             EEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEE
T ss_pred             ccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEE
Confidence              5544444332            445566666  567899999999999999999999999999988  8999999999


Q ss_pred             cCCCCEEEEEEcCCcEEEEECCCCcEEEEee-CCCCCeEEEEEe----cCCCEEEEEeCCCcEEEEECCCCeEEEEeeCC
Q psy14440        553 HPNSNYVATGSSDRTIRLWDCVTGSHVRLLT-GHKAPVYALSFS----VCGRFLASAGGDGNVHMWDLSNGHLLTLLTGH  627 (711)
Q Consensus       553 sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~-~h~~~I~~la~s----pdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h  627 (711)
                      +|++++|++|+.||+|++||+++++++..+. .|...|++++|+    +++.+|++|+.||.|++||+.+++.+..+.+|
T Consensus       223 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  302 (437)
T 3gre_A          223 DEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINS  302 (437)
T ss_dssp             CTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESS
T ss_pred             CCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcC
Confidence            9999999999999999999999999999886 788899999665    46889999999999999999999998888754


Q ss_pred             --------------------------CCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccc---ccccccc-
Q psy14440        628 --------------------------TDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVN---LSHSADI-  677 (711)
Q Consensus       628 --------------------------~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~---~~~~~~~-  677 (711)
                                                ...|++++|+ ++++|++|+.||+|++||+.+...........   ....... 
T Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  381 (437)
T 3gre_A          303 DEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQV  381 (437)
T ss_dssp             SSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEE
T ss_pred             CCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEe
Confidence                                      4458889999 78999999999999999998755432111100   0000000 


Q ss_pred             ----------ccccccceeeecccCCcceEEEEEccC--Ceeee
Q psy14440        678 ----------KNSSLAYLVRSYKTKASPLLHLIFSRR--NILLR  709 (711)
Q Consensus       678 ----------~~~~~~~~l~~~~t~~~pV~~v~Fs~~--n~lla  709 (711)
                                ........+..+..|...|.+|+|+++  +.+|+
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~  425 (437)
T 3gre_A          382 TANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLV  425 (437)
T ss_dssp             ETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEE
T ss_pred             ecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEE
Confidence                      000111222335558999999999998  76776

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.3e-31  Score=296.13  Aligned_cols=269  Identities=19%  Similarity=0.319  Sum_probs=233.4

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee-----------eccC--ccccccccccCCcEEEEE
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKA-----------MKSS--DQLQDIEMECDDILVRIM  445 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~-----------~~~~--~~~~~l~~~~~d~~i~i~  445 (711)
                      +..++.+|.+.|++++|++++ +|++|+.||+|++||+.+.+...           +...  .+...++.++.++.+++|
T Consensus       154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw  232 (464)
T 3v7d_B          154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW  232 (464)
T ss_dssp             EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred             EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence            456778999999999999988 99999999999999998764322           2222  344668888899999999


Q ss_pred             ecCCCe-----------------------eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q psy14440        446 DERNAE-----------------------TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHG  502 (711)
Q Consensus       446 d~~~~~-----------------------~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~  502 (711)
                      |..+..                       ....+.+|...|.++  ++++++|++|+.||+|++||+.+++++..+.+|.
T Consensus       233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  310 (464)
T 3v7d_B          233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT  310 (464)
T ss_dssp             ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence            987665                       256788999999988  4678999999999999999999999999999999


Q ss_pred             CCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEe
Q psy14440        503 HPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLL  582 (711)
Q Consensus       503 ~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~  582 (711)
                      ..|++++|++++.++++|+.||+|++||+++++.+..+.+|...|.+++|+  +++|++|+.||+|++||+.++.....+
T Consensus       311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~  388 (464)
T 3v7d_B          311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY  388 (464)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee
Confidence            999999999999999999999999999999999999999999999999997  689999999999999999998876665


Q ss_pred             eCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE-eeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy14440        583 TGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTL-LTGHTDVVRALCFSRDGNILASSGQDCSVKLW  655 (711)
Q Consensus       583 ~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~-l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iW  655 (711)
                      . |...+..++|++++++|++|+ ||.|++||+.+++.+.. +..|.+.|++++|+ ++.++++++.||.+.+|
T Consensus       389 ~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          389 H-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             E-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             c-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            4 677788899999999999998 89999999999999886 67788999999998 44555666667765544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.5e-32  Score=298.45  Aligned_cols=240  Identities=31%  Similarity=0.559  Sum_probs=215.9

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      +..++.+|.+.|+|++|  ++++|++|+.||.|++||+.+                               ++....+.+
T Consensus       165 ~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-------------------------------~~~~~~~~~  211 (435)
T 1p22_A          165 CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT-------------------------------GEMLNTLIH  211 (435)
T ss_dssp             EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS-------------------------------CCEEEEECC
T ss_pred             EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC-------------------------------CcEEEEEcC
Confidence            45678899999999999  789999999999999999853                               345667788


Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE---EEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCL---VVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH  535 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~---~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~  535 (711)
                      |.+.|.+++|+  +..|++|+.||+|++||+.++...   ..+.+|...|.+++|  +++++++|+.||+|++||+++++
T Consensus       212 h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~  287 (435)
T 1p22_A          212 HCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE  287 (435)
T ss_dssp             CCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC
T ss_pred             CCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc
Confidence            99999999996  459999999999999999877654   677899999999999  68899999999999999999999


Q ss_pred             eeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q psy14440        536 PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       536 ~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl  615 (711)
                      .+..+.+|...|.+++|+  ++++++|+.||+|++||+++++++..+.+|...|.+++|  ++++|++|+.||.|++||+
T Consensus       288 ~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~  363 (435)
T 1p22_A          288 FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL  363 (435)
T ss_dssp             EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred             EEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence            999999999999999994  789999999999999999999999999999999999999  7899999999999999999


Q ss_pred             CCCe---------EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        616 SNGH---------LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       616 ~sg~---------~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      .+++         .+..+.+|.+.|.+++|  ++++|++|+.||+|++||+....
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          364 VAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             HHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred             CCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence            7766         88999999999999999  78899999999999999998643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.8e-31  Score=281.49  Aligned_cols=256  Identities=19%  Similarity=0.303  Sum_probs=213.6

Q ss_pred             EEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eEEEEEecCCCCEEEEEEcC--CCCEEEEEECCCeEE
Q psy14440        454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW----RCLVVYKGHGHPVWDIKFSP--HGYYFASAGHDRMAR  527 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~----~~~~~~~~h~~~V~~v~~sp--~g~~l~sgs~Dg~i~  527 (711)
                      ..+.+|.+.|++++|++++++|++|+.||+|++||+.++    +....+.+|...|++++|++  ++.+|++|+.||+|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            356799999999999999999999999999999999876    57778899999999999999  599999999999999


Q ss_pred             EEECCCC---------ceeEEeecCCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCcEEEEee-------------
Q psy14440        528 LWATDSY---------HPLRLFVGHYSDVDCVQFHPN--SNYVATGSSDRTIRLWDCVTGSHVRLLT-------------  583 (711)
Q Consensus       528 lwd~~~~---------~~~~~~~~h~~~V~~v~~sp~--~~~latgs~Dg~I~iwD~~~~~~v~~~~-------------  583 (711)
                      +||++++         +.+..+.+|...|.+++|+|+  +++|++|+.||+|++||+++++.+..+.             
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999887         557788899999999999999  9999999999999999999887654432             


Q ss_pred             CCCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCCeE--EEEeeCCCCCEEEEEEeCCC----CEEEEEeCCCcEEE
Q psy14440        584 GHKAPVYALSFSVC---GRFLASAGGDGNVHMWDLSNGHL--LTLLTGHTDVVRALCFSRDG----NILASSGQDCSVKL  654 (711)
Q Consensus       584 ~h~~~I~~la~spd---g~~Lasgs~Dg~I~iwDl~sg~~--i~~l~~h~~~V~sl~fspdg----~~Lasgs~Dg~V~i  654 (711)
                      +|...+.+++|+|+   +.+|++++.|+.+.+|+...++.  +..+.+|.+.|++++|++++    ++|++|+.||+|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            68889999999997   99999999999999998888775  77788999999999999998    89999999999999


Q ss_pred             EeCCCCCCccCccccccc-----------------------cccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        655 WDFAKLSDEVGTEEVNLS-----------------------HSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       655 Wdl~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      ||+...............                       .............+..+..|..+|.+++|++++.+||
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~  322 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS  322 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE
Confidence            999864322211100000                       0000111223456778899999999999999999887

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.7e-32  Score=297.32  Aligned_cols=253  Identities=16%  Similarity=0.250  Sum_probs=218.4

Q ss_pred             EEecCCCceEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        382 TLLNARQQVTCAEISE-DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~-dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      ++.+|.+.|++++|++ ++++||+|+.||.|+||++.+.....                        ...+....+.+|.
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~------------------------~~~~~~~~~~~h~  131 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL------------------------PLREPVITLEGHT  131 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS------------------------CBCSCSEEEECCS
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc------------------------ccCCceEEecCCC
Confidence            4678999999999999 99999999999999999997543211                        1113456788999


Q ss_pred             CCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEE--ecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee
Q psy14440        461 GPVRKLSFSPDR-SLLLSCSQDNTIRLWSLLLWRCLVVY--KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       461 ~~V~~l~fspdg-~~L~s~s~Dg~V~iwdl~t~~~~~~~--~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      +.|++++|++++ .+|++|+.||+|++||+.+++.+..+  .+|...|.+++|++++.+|++++.||.|++||+++++.+
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  211 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV  211 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE
T ss_pred             CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee
Confidence            999999999998 69999999999999999999999999  889999999999999999999999999999999999999


Q ss_pred             EEe-ecCCCC-eeEEEEcCCCCEEEEE---EcCCcEEEEECCCCcE-EEEee-CCCCCeEEEEEecCCCEEEE-EeCCCc
Q psy14440        538 RLF-VGHYSD-VDCVQFHPNSNYVATG---SSDRTIRLWDCVTGSH-VRLLT-GHKAPVYALSFSVCGRFLAS-AGGDGN  609 (711)
Q Consensus       538 ~~~-~~h~~~-V~~v~~sp~~~~latg---s~Dg~I~iwD~~~~~~-v~~~~-~h~~~I~~la~spdg~~Las-gs~Dg~  609 (711)
                      ..+ .+|.+. +.+++|++++++|++|   +.|+.|++||+++++. +.... .|...+.+++|+++|++|++ |+.||.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~  291 (402)
T 2aq5_A          212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS  291 (402)
T ss_dssp             EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred             eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence            888 688776 8999999999999999   7899999999998764 33333 57788999999999999975 557999


Q ss_pred             EEEEECCCCeE-EEEeeC--CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        610 VHMWDLSNGHL-LTLLTG--HTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       610 I~iwDl~sg~~-i~~l~~--h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      |++||+.+++. +..+..  |.+.|.+++|++++.++++  .|+.+++|++...
T Consensus       292 i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~  343 (402)
T 2aq5_A          292 IRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER  343 (402)
T ss_dssp             EEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred             EEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence            99999998873 444443  5589999999999998874  5779999999763

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.6e-30  Score=275.32  Aligned_cols=275  Identities=26%  Similarity=0.365  Sum_probs=230.9

Q ss_pred             CceeeeccCcc-ccccccccCCcEEEEEecCCC-----eeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q psy14440        419 QKLKAMKSSDQ-LQDIEMECDDILVRIMDERNA-----ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW  492 (711)
Q Consensus       419 ~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~-----~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~  492 (711)
                      +.+..+.++++ ...++.++.|+.|++||..+.     ...+.+.+|.+.|.+++|++++++|++|+.|+.|++|+....
T Consensus        39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~  118 (340)
T 4aow_A           39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG  118 (340)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc
Confidence            34555666655 456888999999999997653     356788999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee-EEeecCCCCeeEEEEcCCC--CEEEEEEcCCcEE
Q psy14440        493 RCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL-RLFVGHYSDVDCVQFHPNS--NYVATGSSDRTIR  569 (711)
Q Consensus       493 ~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~-~~~~~h~~~V~~v~~sp~~--~~latgs~Dg~I~  569 (711)
                      ........+...+..+.+++++.+|++|+.|+.+++||....... ....+|...+.+++|++++  .++++++.|++|+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~  198 (340)
T 4aow_A          119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK  198 (340)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred             ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEE
Confidence            999999999999999999999999999999999999999866443 3456789999999998864  5789999999999


Q ss_pred             EEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC
Q psy14440        570 LWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQD  649 (711)
Q Consensus       570 iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D  649 (711)
                      +||+++++.+..+.+|.+.|++++|+|+|++|++|+.||.|++||+++++.+..+..+ ..|.+++|++++.++ +++.|
T Consensus       199 i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d  276 (340)
T 4aow_A          199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL-CAATG  276 (340)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE-EEEET
T ss_pred             EEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee-eccCC
Confidence            9999999999999999999999999999999999999999999999999999988865 579999999987655 55679


Q ss_pred             CcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        650 CSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       650 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      +.|+|||+........              ............+...|.+|+|++++.+|+
T Consensus       277 ~~i~iwd~~~~~~~~~--------------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~  322 (340)
T 4aow_A          277 PSIKIWDLEGKIIVDE--------------LKQEVISTSSKAEPPQCTSLAWSADGQTLF  322 (340)
T ss_dssp             TEEEEEETTTTEEEEE--------------ECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred             CEEEEEECCCCeEEEe--------------ccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence            9999999875322110              011222234567888999999999999888

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8.3e-31  Score=282.76  Aligned_cols=237  Identities=14%  Similarity=0.183  Sum_probs=192.9

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      .++..|.+.|+|++|++||++||+|+.+| ++||++.+..                               .....  +.
T Consensus        13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~-------------------------------~~~~~--~~   58 (355)
T 3vu4_A           13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA-------------------------------HIMSQ--EM   58 (355)
T ss_dssp             ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE-------------------------------EEEEE--EC
T ss_pred             cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc-------------------------------eeeee--ec
Confidence            34578999999999999999999998876 7899975322                               11111  12


Q ss_pred             CCEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-ceeE
Q psy14440        461 GPVRKLSFSPDRSLL-LSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY-HPLR  538 (711)
Q Consensus       461 ~~V~~l~fspdg~~L-~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~-~~~~  538 (711)
                      ..+..+++.++++.+ ++++.|++|++||+.+++++..+. |...|.+++|++++  ++++ .|+.|++||+.+. +.+.
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~  134 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRIT  134 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSS
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeE
Confidence            247778888888877 567788999999999999999887 67799999998764  4444 4789999999988 6666


Q ss_pred             EeecCCCCeeEEEEcCCCCEEEE--EEcCCcEEEEECCCCc----------------EEEEeeCCCCCeEEEEEecCCCE
Q psy14440        539 LFVGHYSDVDCVQFHPNSNYVAT--GSSDRTIRLWDCVTGS----------------HVRLLTGHKAPVYALSFSVCGRF  600 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp~~~~lat--gs~Dg~I~iwD~~~~~----------------~v~~~~~h~~~I~~la~spdg~~  600 (711)
                      .+..   ....+++++  .++++  |+.||+|++||+.+++                ++..+.+|.+.|++++|+|+|++
T Consensus       135 ~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~  209 (355)
T 3vu4_A          135 DDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM  209 (355)
T ss_dssp             CCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE
T ss_pred             Eecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE
Confidence            6554   455666776  67776  5789999999999876                27888999999999999999999


Q ss_pred             EEEEeCCCc-EEEEECCCCeEEEEee-C-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        601 LASAGGDGN-VHMWDLSNGHLLTLLT-G-HTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       601 Lasgs~Dg~-I~iwDl~sg~~i~~l~-~-h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      |++|+.||+ |+|||+++++.+..+. + |.+.|++++|+|+|++|++|+.||+|+|||+...
T Consensus       210 l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          210 VATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            999999998 9999999999999998 6 9999999999999999999999999999999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.4e-32  Score=302.74  Aligned_cols=252  Identities=14%  Similarity=0.165  Sum_probs=207.0

Q ss_pred             eEEEEEecCCCceEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        378 IACYTLLNARQQVTCAEISE-DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~-dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      .+..++.+|.+.|+|++|+| ++++|++|+.||+|+|||+.+..+..+                             ...
T Consensus       155 ~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~-----------------------------~~~  205 (435)
T 4e54_B          155 PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVF-----------------------------ASS  205 (435)
T ss_dssp             CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEE-----------------------------ECC
T ss_pred             eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEE-----------------------------ecc
Confidence            34556778999999999997 789999999999999999865332211                             111


Q ss_pred             ecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCc
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGY-YFASAGHDRMARLWATDSYH  535 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~-~l~sgs~Dg~i~lwd~~~~~  535 (711)
                      ..+...+.+++|++++++|++|+.||+|++||+. ++.+..+.+|...|++++|+|++. +|++|+.|++|++||+++.+
T Consensus       206 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~  284 (435)
T 4e54_B          206 DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR  284 (435)
T ss_dssp             SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred             CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence            2344567899999999999999999999999986 456677889999999999999875 78899999999999998765


Q ss_pred             eeEE---eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCC------CeEEEEEecCCCEEEEEe-
Q psy14440        536 PLRL---FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKA------PVYALSFSVCGRFLASAG-  605 (711)
Q Consensus       536 ~~~~---~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~------~I~~la~spdg~~Lasgs-  605 (711)
                      ....   ..+|...|.+++|+|++++|++|+.||+|+|||+.++.+...+..|..      .+...+|++++.++++++ 
T Consensus       285 ~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (435)
T 4e54_B          285 GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRY  364 (435)
T ss_dssp             SSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECC
T ss_pred             ccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEc
Confidence            4433   357999999999999999999999999999999999998888776643      234567788877777764 


Q ss_pred             -----------CCCcEEEEECCCCeEEEEee-CCCCCEEEE-EEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        606 -----------GDGNVHMWDLSNGHLLTLLT-GHTDVVRAL-CFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       606 -----------~Dg~I~iwDl~sg~~i~~l~-~h~~~V~sl-~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                                 .++.|++||..+|+.+..+. +|...|.++ +|+|+|++|++|+ |++|+|||+...
T Consensus       365 ~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          365 PDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             CCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred             CCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence                       23579999999999988875 677888887 6999999999876 889999999764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.98  E-value=5.4e-31  Score=285.65  Aligned_cols=270  Identities=23%  Similarity=0.338  Sum_probs=224.5

Q ss_pred             CcEEEEEecCCCeeEEEeecccCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEe-------------cCCCC
Q psy14440        439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVYK-------------GHGHP  504 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~-------------~h~~~  504 (711)
                      +..+++|+....+....+.+|.+.|++++|+| ++++|++|+.||+|++||+.++.....+.             +|...
T Consensus        22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS  101 (408)
T ss_dssp             HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred             cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence            33455666666777788899999999999999 99999999999999999998776544443             59999


Q ss_pred             EEEEEEcC-CCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCC---CCEEEEEEcCCcEEEEECCCCcEEE
Q psy14440        505 VWDIKFSP-HGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN---SNYVATGSSDRTIRLWDCVTGSHVR  580 (711)
Q Consensus       505 V~~v~~sp-~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~---~~~latgs~Dg~I~iwD~~~~~~v~  580 (711)
                      |.+++|++ ++.+|++++.||.|++||+++++.+..+. +...+.++.|++.   +.++++|+.||.|++||+++++.+.
T Consensus       102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  180 (408)
T 4a11_B          102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH  180 (408)
T ss_dssp             EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE
T ss_pred             EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee
Confidence            99999999 77899999999999999999998888776 7788999999984   4599999999999999999999999


Q ss_pred             EeeCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCe-EEEEe---------------eCCCCCEEEEEEeCCCCEE
Q psy14440        581 LLTGHKAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNGH-LLTLL---------------TGHTDVVRALCFSRDGNIL  643 (711)
Q Consensus       581 ~~~~h~~~I~~la~spdg~-~Lasgs~Dg~I~iwDl~sg~-~i~~l---------------~~h~~~V~sl~fspdg~~L  643 (711)
                      .+.+|...|++++|+|+++ +|++|+.||.|++||++++. .+..+               .+|.+.|.+++|+++|++|
T Consensus       181 ~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  260 (408)
T 4a11_B          181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL  260 (408)
T ss_dssp             EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred             eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence            9999999999999999998 58999999999999998765 44444               5788999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCCCccCccccc------------------------cccccccccccccceeeecccCCcceEEE
Q psy14440        644 ASSGQDCSVKLWDFAKLSDEVGTEEVN------------------------LSHSADIKNSSLAYLVRSYKTKASPLLHL  699 (711)
Q Consensus       644 asgs~Dg~V~iWdl~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~l~~~~t~~~pV~~v  699 (711)
                      ++|+.||.|++||+.+...........                        ......++.......+..+..|..+|.++
T Consensus       261 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~  340 (408)
T 4a11_B          261 LTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCC  340 (408)
T ss_dssp             EEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             EEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEE
Confidence            999999999999998765432111000                        00001112223556778889999999999


Q ss_pred             EEccCCeeee
Q psy14440        700 IFSRRNILLR  709 (711)
Q Consensus       700 ~Fs~~n~lla  709 (711)
                      +|++++.+|+
T Consensus       341 ~~s~~~~~l~  350 (408)
T 4a11_B          341 VFQSNFQELY  350 (408)
T ss_dssp             EEETTTTEEE
T ss_pred             EEcCCCCEEE
Confidence            9999998887

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.98  E-value=1.3e-30  Score=276.69  Aligned_cols=241  Identities=16%  Similarity=0.137  Sum_probs=214.2

Q ss_pred             EEEEEecCCCceEEEEECCCCC-EEEEEeCCCeEEEEeC-CCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        379 ACYTLLNARQQVTCAEISEDVS-ILAVGFSESYIKLWSL-VPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~-~LatG~~dg~I~vWdl-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      ....+.+|...|++++|+++++ +|++|+.||.|++|++ .+.+                                ...+
T Consensus        48 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--------------------------------~~~~   95 (342)
T 1yfq_A           48 DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS--------------------------------FQAL   95 (342)
T ss_dssp             EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS--------------------------------EEEC
T ss_pred             cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc--------------------------------eEec
Confidence            3455668999999999999999 9999999999999998 6532                                2455


Q ss_pred             ec--ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCe
Q psy14440        457 VG--HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL---------WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRM  525 (711)
Q Consensus       457 ~~--h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t---------~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~  525 (711)
                      .+  |.+.|.+++|++ +++|++++.|+.|++||+.+         ++++..+. |...|.+++|++++  +++++.|+.
T Consensus        96 ~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~  171 (342)
T 1yfq_A           96 TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQ  171 (342)
T ss_dssp             BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTE
T ss_pred             cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCe
Confidence            67  999999999999 99999999999999999987         66666665 88999999999887  999999999


Q ss_pred             EEEEECCC-Cc--eeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCC------cEEEEeeCCCC--------
Q psy14440        526 ARLWATDS-YH--PLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTG------SHVRLLTGHKA--------  587 (711)
Q Consensus       526 i~lwd~~~-~~--~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~------~~v~~~~~h~~--------  587 (711)
                      |++||+++ +.  .......|...|.+++|+| +++++++|+.||.|++||+..+      +....+.+|..        
T Consensus       172 i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
T 1yfq_A          172 VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA  251 (342)
T ss_dssp             EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC
T ss_pred             EEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccc
Confidence            99999998 54  3345557888999999999 9999999999999999999887      77888888865        


Q ss_pred             -CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCC-CCCEEEEEEeCCCCEEEEEeCCCc-EEEEeC
Q psy14440        588 -PVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGH-TDVVRALCFSRDGNILASSGQDCS-VKLWDF  657 (711)
Q Consensus       588 -~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h-~~~V~sl~fspdg~~Lasgs~Dg~-V~iWdl  657 (711)
                       .|++++|+|+|++|++|+.||.|++||+.+++.+..+.+| .+.|++++  ++|++|++|+.||+ .+.|..
T Consensus       252 ~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          252 YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred             eeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence             9999999999999999999999999999999999999998 99999999  99999999999998 665554

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.98  E-value=8.7e-30  Score=280.68  Aligned_cols=251  Identities=17%  Similarity=0.319  Sum_probs=220.6

Q ss_pred             ccccccCCcEEEEEecCCCeeEEEee--cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEE
Q psy14440        432 DIEMECDDILVRIMDERNAETTRTLV--GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIK  509 (711)
Q Consensus       432 ~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~  509 (711)
                      .++++ .|+.|++||..+++....+.  +|...|++|+|+++|++|++|+.||+|++||+.+++++..+.+|...+.++.
T Consensus       118 ~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s  196 (420)
T 4gga_A          118 VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS  196 (420)
T ss_dssp             EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEe
Confidence            44444 48899999999998877665  6788999999999999999999999999999999999999999999999988


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCC-ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc----EEEEeeC
Q psy14440        510 FSPHGYYFASAGHDRMARLWATDSY-HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS----HVRLLTG  584 (711)
Q Consensus       510 ~sp~g~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~----~v~~~~~  584 (711)
                      |+  +.++++|+.|+.+++||.... ..+..+.+|...+.++.|+++++++++++.|+.|++||..+++    .+.....
T Consensus       197 ~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~  274 (420)
T 4gga_A          197 WN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ  274 (420)
T ss_dssp             EE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC
T ss_pred             eC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecc
Confidence            85  679999999999999998864 5567888999999999999999999999999999999998775    3567778


Q ss_pred             CCCCeEEEEEecCCC-EEEEE--eCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEe--CCCcEEEEeCCC
Q psy14440        585 HKAPVYALSFSVCGR-FLASA--GGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSG--QDCSVKLWDFAK  659 (711)
Q Consensus       585 h~~~I~~la~spdg~-~Lasg--s~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs--~Dg~V~iWdl~~  659 (711)
                      |.+.|.+++|+|++. +++++  +.|++|+|||+.+++.+..+..| ..+.++.|+++++.|++++  .||.|+|||+.+
T Consensus       275 ~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~  353 (420)
T 4gga_A          275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT  353 (420)
T ss_dssp             CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred             cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence            999999999999654 55554  57999999999999999988865 4688999999999888765  799999999864


Q ss_pred             CCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        660 LSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                                             ..++..+.+|..+|.+|+|+++|.+||
T Consensus       354 -----------------------~~~v~~l~gH~~~V~~l~~spdg~~l~  380 (420)
T 4gga_A          354 -----------------------MAKVAELKGHTSRVLSLTMSPDGATVA  380 (420)
T ss_dssp             -----------------------CCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             -----------------------CcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence                                   234667889999999999999999988

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.98  E-value=1e-30  Score=289.33  Aligned_cols=248  Identities=22%  Similarity=0.415  Sum_probs=214.0

Q ss_pred             EEEeecccCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCC----------CeEEEEEecCCCCEEEEEEcCCCC-EEEEE
Q psy14440        453 TRTLVGHEGPVRKLSFSPD-RSLLLSCSQDNTIRLWSLLL----------WRCLVVYKGHGHPVWDIKFSPHGY-YFASA  520 (711)
Q Consensus       453 ~~~l~~h~~~V~~l~fspd-g~~L~s~s~Dg~V~iwdl~t----------~~~~~~~~~h~~~V~~v~~sp~g~-~l~sg  520 (711)
                      .....+|.+.|++++|+++ +.+|++++.||.|++||+.+          ...+..+.+|...|++++|++++. +|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            3566789999999999997 67999999999999999986          677888999999999999999988 99999


Q ss_pred             ECCCeEEEEECCCCce-------eEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCC---cEEEEeeCCCCCe
Q psy14440        521 GHDRMARLWATDSYHP-------LRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTG---SHVRLLTGHKAPV  589 (711)
Q Consensus       521 s~Dg~i~lwd~~~~~~-------~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~---~~v~~~~~h~~~I  589 (711)
                      +.||+|++|++..+..       ...+.+|...|.+++|+| ++.+|++++.||.|++||++++   +.+..+..|...|
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            9999999999987422       466778999999999999 7889999999999999999987   5778888999999


Q ss_pred             EEEEEecCCC-EEEEEeCCCcEEEEECCC-CeEEEEeeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCCCccCc
Q psy14440        590 YALSFSVCGR-FLASAGGDGNVHMWDLSN-GHLLTLLTGHTDVVRALCFSRDGN-ILASSGQDCSVKLWDFAKLSDEVGT  666 (711)
Q Consensus       590 ~~la~spdg~-~Lasgs~Dg~I~iwDl~s-g~~i~~l~~h~~~V~sl~fspdg~-~Lasgs~Dg~V~iWdl~~~~~~~~~  666 (711)
                      ++++|+|++. +|++|+.||.|++||+++ +..+..+.+|.+.|++++|++++. +|++|+.||+|+|||+.........
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  360 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  360 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence            9999999987 688999999999999998 567888999999999999999985 7999999999999999874432211


Q ss_pred             cccccccccccccccccceeeecccCCcceEEEEEccCCe-eee
Q psy14440        667 EEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNI-LLR  709 (711)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~-lla  709 (711)
                      ..         .......++..+.+|...|.+++|++++. +|+
T Consensus       361 ~~---------~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~  395 (430)
T 2xyi_A          361 ED---------AEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC  395 (430)
T ss_dssp             HH---------HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred             cc---------cccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence            10         01123456778889999999999999987 665

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.98  E-value=1.4e-30  Score=287.29  Aligned_cols=273  Identities=15%  Similarity=0.213  Sum_probs=212.0

Q ss_pred             EEEEEecCC------------CceEEEEECCCC--CEEEEEeCCCeEEEEeCCCCceeeeccCcc-----------cccc
Q psy14440        379 ACYTLLNAR------------QQVTCAEISEDV--SILAVGFSESYIKLWSLVPQKLKAMKSSDQ-----------LQDI  433 (711)
Q Consensus       379 ~~~tl~~h~------------~~V~~l~fs~dg--~~LatG~~dg~I~vWdl~~~~~~~~~~~~~-----------~~~l  433 (711)
                      +..++.+|.            +.|++++|++++  .+|++|+.||.|++|++.+...........           ...+
T Consensus        73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  152 (447)
T 3dw8_B           73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTL  152 (447)
T ss_dssp             EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSC
T ss_pred             EecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccce
Confidence            456788898            889999999998  899999999999999987644321100000           0000


Q ss_pred             ccccCCcEEEEEecCCCeeEEE-eecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEE-------EecCCCC
Q psy14440        434 EMECDDILVRIMDERNAETTRT-LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL-WRCLVV-------YKGHGHP  504 (711)
Q Consensus       434 ~~~~~d~~i~i~d~~~~~~~~~-l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t-~~~~~~-------~~~h~~~  504 (711)
                      ......  -.-+.. .....+. +.+|.+.|++++|++++++|++| .||+|++||+.+ ...+..       +.+|...
T Consensus       153 ~~~~~~--~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  228 (447)
T 3dw8_B          153 RVPVFR--PMDLMV-EASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEV  228 (447)
T ss_dssp             CCCEEE--EEEEEE-EEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCC
T ss_pred             Eecccc--chheee-eccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcc
Confidence            000000  000110 1112223 36899999999999999999998 799999999984 444442       4579999


Q ss_pred             EEEEEEcCCC-CEEEEEECCCeEEEEECCCCce----eEEeecCCC------------CeeEEEEcCCCCEEEEEEcCCc
Q psy14440        505 VWDIKFSPHG-YYFASAGHDRMARLWATDSYHP----LRLFVGHYS------------DVDCVQFHPNSNYVATGSSDRT  567 (711)
Q Consensus       505 V~~v~~sp~g-~~l~sgs~Dg~i~lwd~~~~~~----~~~~~~h~~------------~V~~v~~sp~~~~latgs~Dg~  567 (711)
                      |++++|+|++ .+|++|+.||+|++||+++++.    +..+.+|..            .|.+++|+|++++|++++. ++
T Consensus       229 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~  307 (447)
T 3dw8_B          229 ITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS  307 (447)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE
T ss_pred             eEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce
Confidence            9999999998 9999999999999999999886    788888876            8999999999999999998 99


Q ss_pred             EEEEECCC-CcEEEEeeCCCCC---------------eEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC-----
Q psy14440        568 IRLWDCVT-GSHVRLLTGHKAP---------------VYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG-----  626 (711)
Q Consensus       568 I~iwD~~~-~~~v~~~~~h~~~---------------I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~-----  626 (711)
                      |++||+++ ++.+..+.+|...               +..++|+|+|++|++|+.||.|+|||+.+++.+. +.+     
T Consensus       308 v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~  386 (447)
T 3dw8_B          308 VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENN  386 (447)
T ss_dssp             EEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTC
T ss_pred             EEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeeccccc
Confidence            99999997 8888888888642               3349999999999999999999999999988763 222     


Q ss_pred             ----------------------------CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        627 ----------------------------HTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       627 ----------------------------h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                                                  +...|.+++|+|+|++||+|+.++ +++|.-+
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          387 KPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             ccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence                                        235688999999999999998775 8888643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.2e-31  Score=293.38  Aligned_cols=248  Identities=11%  Similarity=0.117  Sum_probs=182.9

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCE
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV  463 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V  463 (711)
                      ..|...+....+++++.+||+|+.|++|+||++.+.....                          ......+.||.+.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~--------------------------~~~~~~~~gH~~~v  139 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIIT--------------------------QHVLGGKSGHHNFV  139 (393)
T ss_dssp             C----------CCEEEEEEEEEETTSCEEEEEEETTEEEE--------------------------EEEECTTTSCSSCE
T ss_pred             cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccce--------------------------eeeecccCCCCCce
Confidence            4455566666777888899999999999999985433211                          11233467999999


Q ss_pred             EEEEEcC--------CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCC-CEEEEEECCCeEEEEECCCC
Q psy14440        464 RKLSFSP--------DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       464 ~~l~fsp--------dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g-~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      ++++|+|        |+++|+|||.|++|+|||+.++..+..+.+|...|.+++|+|++ ++|++|+.||+|++||++++
T Consensus       140 ~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~  219 (393)
T 4gq1_A          140 NDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN  219 (393)
T ss_dssp             EEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred             EEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence            9999998        88999999999999999999998888888999999999999987 58999999999999999876


Q ss_pred             ceeEE-------------------------eecCCCCeeEEEEc-CCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCC
Q psy14440        535 HPLRL-------------------------FVGHYSDVDCVQFH-PNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAP  588 (711)
Q Consensus       535 ~~~~~-------------------------~~~h~~~V~~v~~s-p~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~  588 (711)
                      +....                         ..+|...+.++.|+ ++++.|++++.|+++++||+.++.....+..|...
T Consensus       220 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~  299 (393)
T 4gq1_A          220 LSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMK  299 (393)
T ss_dssp             C----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------
T ss_pred             cccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCc
Confidence            54322                         23677889999987 79999999999999999999988877777666655


Q ss_pred             eEEEEEec--------------------CCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC
Q psy14440        589 VYALSFSV--------------------CGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       589 I~~la~sp--------------------dg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~  648 (711)
                      +..+.+++                    ++.++++|+.||+|+|||+.+++.+..+.+|...|++++|+|||++||+++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~  379 (393)
T 4gq1_A          300 LGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATE  379 (393)
T ss_dssp             ----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred             cccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            55444433                    3446778889999999999999998888889999999999999999999986


Q ss_pred             CCcEEEEeCC
Q psy14440        649 DCSVKLWDFA  658 (711)
Q Consensus       649 Dg~V~iWdl~  658 (711)
                      || +.+|.+.
T Consensus       380 ~G-v~lvrL~  388 (393)
T 4gq1_A          380 GS-VLLTRLM  388 (393)
T ss_dssp             SE-EEEEEEG
T ss_pred             CC-eEEEEEe
Confidence            65 6666654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.4e-31  Score=280.62  Aligned_cols=256  Identities=10%  Similarity=0.028  Sum_probs=206.5

Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCCceee---------eccCccccccccccCCcEEEEEecC---------CCeeEEE
Q psy14440        394 EISEDVSILAVGFSESYIKLWSLVPQKLKA---------MKSSDQLQDIEMECDDILVRIMDER---------NAETTRT  455 (711)
Q Consensus       394 ~fs~dg~~LatG~~dg~I~vWdl~~~~~~~---------~~~~~~~~~l~~~~~d~~i~i~d~~---------~~~~~~~  455 (711)
                      .+..|+.+||+|+.||.|++||+.+++...         +...+.   ++.++.|+.+++|+..         +++.+..
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~  119 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLRE  119 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEE
Confidence            455688999999999999999998765322         112222   7788899999999654         4443444


Q ss_pred             ee-cccCCEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy14440        456 LV-GHEGPVRKLSFSP--DRSLLLSCSQDNTIRLWSLLLWRCLVVYKG-HGHPVWDIKFSPHGYYFASAGHDRMARLWAT  531 (711)
Q Consensus       456 l~-~h~~~V~~l~fsp--dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~-h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~  531 (711)
                      +. +|.+.|.+++|+|  ++++|++|+.||+|++||+.+++++..... |...|.+++|+|+|.+|++|+.||.|++||+
T Consensus       120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~  199 (343)
T 3lrv_A          120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNL  199 (343)
T ss_dssp             EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred             eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence            43 7789999999999  999999999999999999999998777644 4568999999999999999999999999999


Q ss_pred             CCCcee-EEeec-CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC---CCCCeE--EEEEecCCCEEEEE
Q psy14440        532 DSYHPL-RLFVG-HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG---HKAPVY--ALSFSVCGRFLASA  604 (711)
Q Consensus       532 ~~~~~~-~~~~~-h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~---h~~~I~--~la~spdg~~Lasg  604 (711)
                      ++++.+ ..+.+ |...|.+++|+|++.+|++|+ |++|++||+++++.+..+..   |...+.  +++|+|+|++|++|
T Consensus       200 ~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  278 (343)
T 3lrv_A          200 SSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY  278 (343)
T ss_dssp             SCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEE
T ss_pred             CCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEe
Confidence            999887 77887 999999999999999999999 55999999999887655543   434444  69999999999999


Q ss_pred             eC-CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeC---CCCEEEEEeCCCcEEEEeC
Q psy14440        605 GG-DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSR---DGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       605 s~-Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fsp---dg~~Lasgs~Dg~V~iWdl  657 (711)
                      +. |+.|+||++.++......    ..+..++|++   +++.|++++.||.++++-.
T Consensus       279 s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          279 SNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             ETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred             cCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence            98 999999999665432222    4577888888   8889999999999998854

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=7.5e-31  Score=287.11  Aligned_cols=232  Identities=18%  Similarity=0.143  Sum_probs=169.9

Q ss_pred             EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE-----EEecCCCCEEEEEEcC--------CCCEEEEEE
Q psy14440        455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV-----VYKGHGHPVWDIKFSP--------HGYYFASAG  521 (711)
Q Consensus       455 ~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~-----~~~~h~~~V~~v~~sp--------~g~~l~sgs  521 (711)
                      ....|.+.+....+++++.+|++|+.|++|+|||+.+++...     .+.+|...|++++|+|        ++++|++|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s  163 (393)
T 4gq1_A           84 SENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG  163 (393)
T ss_dssp             ECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred             cccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence            334566666667777788899999999999999998886543     3568999999999997        789999999


Q ss_pred             CCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEE-------------------
Q psy14440        522 HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNS-NYVATGSSDRTIRLWDCVTGSHVRL-------------------  581 (711)
Q Consensus       522 ~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~latgs~Dg~I~iwD~~~~~~v~~-------------------  581 (711)
                      .|++|+|||+.++.++..+.+|...|.+++|+|++ ++|++|+.||+|++||+++++....                   
T Consensus       164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~  243 (393)
T 4gq1_A          164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP  243 (393)
T ss_dssp             TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred             CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence            99999999999888888888999999999999987 5899999999999999998765432                   


Q ss_pred             ------eeCCCCCeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeC----------------
Q psy14440        582 ------LTGHKAPVYALSFS-VCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSR----------------  638 (711)
Q Consensus       582 ------~~~h~~~I~~la~s-pdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fsp----------------  638 (711)
                            ..+|...+.+++|+ ++|+.|++++.|++|++||+..++....+..|...+..+.+.+                
T Consensus       244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (393)
T 4gq1_A          244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACP  323 (393)
T ss_dssp             GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEE
T ss_pred             ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEE
Confidence                  23577889999987 7999999999999999999999888777776665555544433                


Q ss_pred             ----CCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        639 ----DGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       639 ----dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                          ++.++++|+.||+|+|||+.+..                       .+..+..+..+|.+|+|++||.+||
T Consensus       324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~-----------------------~~~~~~~~~~~V~svafspdG~~LA  375 (393)
T 4gq1_A          324 HPRYMDYFATAHSQHGLIQLINTYEKD-----------------------SNSIPIQLGMPIVDFCWHQDGSHLA  375 (393)
T ss_dssp             CSSCTTEEEEEETTTTEEEEEETTCTT-----------------------CCEEEEECSSCEEEEEECTTSSEEE
T ss_pred             ccCCCCEEEEEECCCCEEEEEECCCCc-----------------------EEEEecCCCCcEEEEEEcCCCCEEE
Confidence                34467888899999999987532                       2234556778999999999999998

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.1e-30  Score=283.13  Aligned_cols=247  Identities=12%  Similarity=0.079  Sum_probs=209.4

Q ss_pred             EecCCCceEEEEECCCCCEE-EEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee--cc
Q psy14440        383 LLNARQQVTCAEISEDVSIL-AVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV--GH  459 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~L-atG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~--~h  459 (711)
                      ..+|.+.|++++|++++++| |+|+.||.|+||++..                             .++.....+.  .|
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~-----------------------------~~~~~~~~~~~~~~  148 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDK-----------------------------TSKNVLKLRKRFCF  148 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECS-----------------------------SSSSCEEEEEEEEC
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcC-----------------------------CCCceeeeeecccC
Confidence            35788899999999999996 8999999999999851                             0122233333  56


Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE----EEecCCCCEEEEEEcCC---CCEEEEEECCCeEEEEECC
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV----VYKGHGHPVWDIKFSPH---GYYFASAGHDRMARLWATD  532 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~----~~~~h~~~V~~v~~sp~---g~~l~sgs~Dg~i~lwd~~  532 (711)
                      ...|++++|+|++++|++|+.||.|++|++.++....    .+.+|...|++++|+|+   +.+|++|+.|++|++||+.
T Consensus       149 ~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~  228 (450)
T 2vdu_B          149 SKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP  228 (450)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES
T ss_pred             CCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC
Confidence            7899999999999999999999999999998776543    67789999999999999   9999999999999999999


Q ss_pred             CCceeEE-eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC-------------------------CC
Q psy14440        533 SYHPLRL-FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG-------------------------HK  586 (711)
Q Consensus       533 ~~~~~~~-~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~-------------------------h~  586 (711)
                      +++.+.. +.+|...|.+++|+ ++++|++|+.|++|++||+.+++++..+..                         ..
T Consensus       229 ~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (450)
T 2vdu_B          229 QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE  307 (450)
T ss_dssp             CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred             CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence            9988877 55899999999999 999999999999999999999999888763                         23


Q ss_pred             CCeEEEEEecCCCEEEEEe-CCCcEEEEEC--CCC---eEEEEeeCCCCCEEEEEEeCCCCEEEEEeC------CCcEEE
Q psy14440        587 APVYALSFSVCGRFLASAG-GDGNVHMWDL--SNG---HLLTLLTGHTDVVRALCFSRDGNILASSGQ------DCSVKL  654 (711)
Q Consensus       587 ~~I~~la~spdg~~Lasgs-~Dg~I~iwDl--~sg---~~i~~l~~h~~~V~sl~fspdg~~Lasgs~------Dg~V~i  654 (711)
                      ..|.+++|++++++|++++ .|+.|+|||+  .++   +.+..+.+| +.|.+++|++++.++++++.      +..|++
T Consensus       308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v  386 (450)
T 2vdu_B          308 FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF  386 (450)
T ss_dssp             CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred             EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence            5799999999999999998 8999999999  666   778888888 88999999996444443333      556899


Q ss_pred             EeCCCC
Q psy14440        655 WDFAKL  660 (711)
Q Consensus       655 Wdl~~~  660 (711)
                      |.+...
T Consensus       387 ~~~~~~  392 (450)
T 2vdu_B          387 IEYNLN  392 (450)
T ss_dssp             EEEETT
T ss_pred             EEEEcC
Confidence            988654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.7e-28  Score=269.94  Aligned_cols=270  Identities=11%  Similarity=0.059  Sum_probs=230.8

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee----------------eccCccccccccccCCcEEEEEecCC
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKA----------------MKSSDQLQDIEMECDDILVRIMDERN  449 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~----------------~~~~~~~~~l~~~~~d~~i~i~d~~~  449 (711)
                      +...+.+++|++++.++++++.++.|++||+.+++...                +....+...++.++.++.+++||..+
T Consensus       121 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          121 TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred             CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence            34567799999988888999999999999998765433                23344556677778899999999999


Q ss_pred             CeeEEEeecccCCEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE-------
Q psy14440        450 AETTRTLVGHEGPVRKLSFSPDRSLLLSC-SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG-------  521 (711)
Q Consensus       450 ~~~~~~l~~h~~~V~~l~fspdg~~L~s~-s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs-------  521 (711)
                      ++....+..|...+.+++|++++++++++ +.|++|++||+.+++.+..+..+ ..+.+++|+|+|+++++++       
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~  279 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQE  279 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred             ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccc
Confidence            99999999999999999999999988554 47999999999999988887754 4599999999999999988       


Q ss_pred             -CCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEE-EEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCC
Q psy14440        522 -HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYV-ATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGR  599 (711)
Q Consensus       522 -~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l-atgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~  599 (711)
                       .||.|++||+.+++.+..+ .|...+.+++|+|+++++ ++++.|+.|++||+.+++.+..+. +...+.+++|+++|+
T Consensus       280 ~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~  357 (433)
T 3bws_A          280 SGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGK  357 (433)
T ss_dssp             SCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSS
T ss_pred             cCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCC
Confidence             5889999999988777665 455689999999999765 556789999999999999888776 678899999999999


Q ss_pred             EEEEEeC---------------CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEeCCC
Q psy14440        600 FLASAGG---------------DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ-DCSVKLWDFAK  659 (711)
Q Consensus       600 ~Lasgs~---------------Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~-Dg~V~iWdl~~  659 (711)
                      +|++++.               ||.|++||+.+++.+..+.. ...+.+++|+++|++|++++. |++|++|++..
T Consensus       358 ~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          358 YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            9998876               57999999999999988886 457899999999999998875 99999999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=3.6e-28  Score=254.72  Aligned_cols=251  Identities=16%  Similarity=0.298  Sum_probs=216.4

Q ss_pred             ccccccCCcEEEEEecCCCeeEEEee--cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEE
Q psy14440        432 DIEMECDDILVRIMDERNAETTRTLV--GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIK  509 (711)
Q Consensus       432 ~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~  509 (711)
                      .++++ .|+.|++||..+++..+.+.  +|...|++++|++++++|++|+.||+|++||+.+++++..+.+|...+.++.
T Consensus        38 ~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~  116 (318)
T 4ggc_A           38 VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS  116 (318)
T ss_dssp             EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEee
Confidence            34444 58899999999999887665  6788899999999999999999999999999999999999999999988766


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCC-ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE----EEEeeC
Q psy14440        510 FSPHGYYFASAGHDRMARLWATDSY-HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH----VRLLTG  584 (711)
Q Consensus       510 ~sp~g~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~----v~~~~~  584 (711)
                      +  ++..+++++.++.+++|+.... ..+..+.+|...+.++.+++++++|++++.||+|++||+++++.    ......
T Consensus       117 ~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  194 (318)
T 4ggc_A          117 W--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ  194 (318)
T ss_dssp             E--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC
T ss_pred             c--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecc
Confidence            5  4679999999999999998865 45677889999999999999999999999999999999988753    455567


Q ss_pred             CCCCeEEEEEecCCCEE---EEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEe--CCCcEEEEeCCC
Q psy14440        585 HKAPVYALSFSVCGRFL---ASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSG--QDCSVKLWDFAK  659 (711)
Q Consensus       585 h~~~I~~la~spdg~~L---asgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs--~Dg~V~iWdl~~  659 (711)
                      |.+.|.++++++++..+   ++++.++.|++||...+....... +...+..++|++++..+++++  .||+|+|||+.+
T Consensus       195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~  273 (318)
T 4ggc_A          195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT  273 (318)
T ss_dssp             CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred             cCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCC
Confidence            88999999999976533   466788999999999888776654 567799999999999887765  799999999864


Q ss_pred             CCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        660 LSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                                             ..++..+.+|..+|.+|+|++++.+||
T Consensus       274 -----------------------~~~~~~l~gH~~~V~~l~~spdg~~l~  300 (318)
T 4ggc_A          274 -----------------------MAKVAELKGHTSRVLSLTMSPDGATVA  300 (318)
T ss_dssp             -----------------------CCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             -----------------------CcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence                                   334667889999999999999999988

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.2e-30  Score=303.47  Aligned_cols=238  Identities=21%  Similarity=0.338  Sum_probs=207.8

Q ss_pred             EEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEEEEEecCCCCEEEEEEcCC--CCEEEEEECCCeEEEE
Q psy14440        454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL--LWRCLVVYKGHGHPVWDIKFSPH--GYYFASAGHDRMARLW  529 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~--t~~~~~~~~~h~~~V~~v~~sp~--g~~l~sgs~Dg~i~lw  529 (711)
                      ..+.+|.+.|++++|++++++|++|+.||+|++||+.  ++..+..+.+|...|++++|+++  +++|++|+.||+|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            4577999999999999999999999999999999997  66788889999999999999987  9999999999999999


Q ss_pred             ECCCCc--eeEEeecCCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCc--EEEEeeCCCCCeEEEEEec-------
Q psy14440        530 ATDSYH--PLRLFVGHYSDVDCVQFHPN--SNYVATGSSDRTIRLWDCVTGS--HVRLLTGHKAPVYALSFSV-------  596 (711)
Q Consensus       530 d~~~~~--~~~~~~~h~~~V~~v~~sp~--~~~latgs~Dg~I~iwD~~~~~--~v~~~~~h~~~I~~la~sp-------  596 (711)
                      |+++++  .+..+.+|...|.+++|+|+  ++++++|+.||+|++||++++.  ....+.+|...|.+++|+|       
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            999886  67788899999999999999  9999999999999999998873  4556778999999999999       


Q ss_pred             ------CCCEEEEEeCCCcEEEEECCCC----eEEEEeeCCCCCEEEEEEeCC---CCEEEEEeCCCcEEEEeCCCCCCc
Q psy14440        597 ------CGRFLASAGGDGNVHMWDLSNG----HLLTLLTGHTDVVRALCFSRD---GNILASSGQDCSVKLWDFAKLSDE  663 (711)
Q Consensus       597 ------dg~~Lasgs~Dg~I~iwDl~sg----~~i~~l~~h~~~V~sl~fspd---g~~Lasgs~Dg~V~iWdl~~~~~~  663 (711)
                            ++.+|++|+.||.|++||++++    ..+..+.+|.+.|++++|+|+   +++|++|+.||+|++||+......
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~  242 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP  242 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence                  5899999999999999999887    667788999999999999999   899999999999999999864321


Q ss_pred             cCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        664 VGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      .                  ...+.....+...|.+++|++++.+|+
T Consensus       243 ~------------------~~~~~~~~~~~~~v~~l~~spdg~~l~  270 (753)
T 3jro_A          243 W------------------KKTLLKEEKFPDVLWRASWSLSGNVLA  270 (753)
T ss_dssp             C------------------BCCBSSSSCCSSCCCCEEECTTTCCEE
T ss_pred             c------------------eeEEeccCCCCCceEEEEEcCCCCEEE
Confidence            1                  111223455778899999999998887

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=9.2e-30  Score=275.81  Aligned_cols=234  Identities=15%  Similarity=0.202  Sum_probs=193.7

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEe-----------CCCeEEEEeCCCCc--------------------eeeeccCc
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGF-----------SESYIKLWSLVPQK--------------------LKAMKSSD  428 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~-----------~dg~I~vWdl~~~~--------------------~~~~~~~~  428 (711)
                      .+++..|...|.|++++  ++.+++|.           .|+.||+|++....                    ++.+.+++
T Consensus        66 ~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp  143 (365)
T 4h5i_A           66 EFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR  143 (365)
T ss_dssp             EEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT
T ss_pred             EEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC
Confidence            45677888889888775  44666654           57789999875432                    22345566


Q ss_pred             ccccccc--ccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE--EecCCCC
Q psy14440        429 QLQDIEM--ECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV--YKGHGHP  504 (711)
Q Consensus       429 ~~~~l~~--~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~--~~~h~~~  504 (711)
                      ++..+++  ++.|+.|++||..+++....+. |.+.|++++|+|||++|++++.++ +++|+..++..+..  ..+|...
T Consensus       144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~  221 (365)
T 4h5i_A          144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWS  221 (365)
T ss_dssp             TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEE
T ss_pred             CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCC
Confidence            6666654  4578999999999999888875 778899999999999999998655 67777777766543  4568889


Q ss_pred             EEEEEEcCCCCEEEEEECCC----eEEEEECCCCce----eEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC
Q psy14440        505 VWDIKFSPHGYYFASAGHDR----MARLWATDSYHP----LRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG  576 (711)
Q Consensus       505 V~~v~~sp~g~~l~sgs~Dg----~i~lwd~~~~~~----~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~  576 (711)
                      |.+++|+|++.++++++.|+    .+++|++.....    ...+.+|...|++++|+|+|++||+|+.|++|+|||++++
T Consensus       222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~  301 (365)
T 4h5i_A          222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL  301 (365)
T ss_dssp             EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence            99999999999999999887    688899876643    3467789999999999999999999999999999999999


Q ss_pred             cEEEEe-eCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy14440        577 SHVRLL-TGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       577 ~~v~~~-~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s  617 (711)
                      ++++.+ .+|...|++++|||||++||||+.|++|+|||+..
T Consensus       302 ~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          302 SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            999875 78999999999999999999999999999999964

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1e-28  Score=263.51  Aligned_cols=245  Identities=18%  Similarity=0.224  Sum_probs=209.5

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      ...+.+|.+.|++++|++++++|++|+.||.|++|++.+.+                                ...+.+|
T Consensus        79 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--------------------------------~~~~~~~  126 (368)
T 3mmy_A           79 PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ--------------------------------AIQIAQH  126 (368)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--------------------------------EEEEEEC
T ss_pred             EEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC--------------------------------ceeeccc
Confidence            36788899999999999999999999999999999986432                                1224569


Q ss_pred             cCCEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee
Q psy14440        460 EGPVRKLSF--SPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       460 ~~~V~~l~f--spdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      .+.|++++|  ++++++|++++.||+|++||+.+++.+..+..+. .+.++.+.  +..+++++.++.+++|+++.....
T Consensus       127 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~  203 (368)
T 3mmy_A          127 DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSE  203 (368)
T ss_dssp             SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEE
T ss_pred             cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccch
Confidence            999999999  8999999999999999999999999988888665 66667666  458899999999999999876443


Q ss_pred             EEe--ecCCCCeeEEEEcCCCCE----EEEEEcCCcEEEEECCCC---cEEEEeeCCCC------------CeEEEEEec
Q psy14440        538 RLF--VGHYSDVDCVQFHPNSNY----VATGSSDRTIRLWDCVTG---SHVRLLTGHKA------------PVYALSFSV  596 (711)
Q Consensus       538 ~~~--~~h~~~V~~v~~sp~~~~----latgs~Dg~I~iwD~~~~---~~v~~~~~h~~------------~I~~la~sp  596 (711)
                      ...  ..+...+.++++.++...    +++|+.||.|++||++..   ..+..+.+|..            .|++++|+|
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  283 (368)
T 3mmy_A          204 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP  283 (368)
T ss_dssp             EEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT
T ss_pred             hhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec
Confidence            322  234456677777765554    999999999999999987   56778888876            799999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        597 CGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       597 dg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      +|++|++|+.||.|++||+.+++.+..+.+|...|++++|+++|++|++|+.|+..+.|++-.
T Consensus       284 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          284 VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence            999999999999999999999999999999999999999999999999999998777666544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.5e-29  Score=269.10  Aligned_cols=229  Identities=13%  Similarity=0.100  Sum_probs=194.5

Q ss_pred             ccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECC---------CCeEEEEE
Q psy14440        428 DQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL---------LWRCLVVY  498 (711)
Q Consensus       428 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~---------t~~~~~~~  498 (711)
                      .+...++.++.|+.|++||..+++.+..+.  .+.|.++.|+|+   +++++.|++|++|+..         +++.+..+
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~  120 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREI  120 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence            455678899999999999999998888776  567888899888   9999999999999665         55545555


Q ss_pred             e-cCCCCEEEEEEcC--CCCEEEEEECCCeEEEEECCCCceeEEee-cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC
Q psy14440        499 K-GHGHPVWDIKFSP--HGYYFASAGHDRMARLWATDSYHPLRLFV-GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV  574 (711)
Q Consensus       499 ~-~h~~~V~~v~~sp--~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~  574 (711)
                      . +|...|.+++|+|  ++++|++|+.||+|++||+++++.+..+. .|...|.+++|+|++.+|++|+.||+|++||++
T Consensus       121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~  200 (343)
T 3lrv_A          121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS  200 (343)
T ss_dssp             ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred             ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence            4 6778999999999  99999999999999999999998877664 455689999999999999999999999999999


Q ss_pred             CCcEE-EEeeC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC---CCCCEE--EEEEeCCCCEEEEEe
Q psy14440        575 TGSHV-RLLTG-HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG---HTDVVR--ALCFSRDGNILASSG  647 (711)
Q Consensus       575 ~~~~v-~~~~~-h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~---h~~~V~--sl~fspdg~~Lasgs  647 (711)
                      +++.+ ..+.+ |.+.|++++|+|+|.+|++|+ |+.|++||+++++.+..+..   |...+.  +++|+++|++|++|+
T Consensus       201 ~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s  279 (343)
T 3lrv_A          201 SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYS  279 (343)
T ss_dssp             CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEE
T ss_pred             CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEec
Confidence            99988 88888 999999999999999999999 55999999999876555443   333443  699999999999999


Q ss_pred             C-CCcEEEEeCCCCCC
Q psy14440        648 Q-DCSVKLWDFAKLSD  662 (711)
Q Consensus       648 ~-Dg~V~iWdl~~~~~  662 (711)
                      . |+.|+||++.+...
T Consensus       280 ~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          280 NESNSLTIYKFDKKTK  295 (343)
T ss_dssp             TTTTEEEEEEECTTTC
T ss_pred             CCCCcEEEEEEccccc
Confidence            8 99999999976443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=3.9e-28  Score=255.89  Aligned_cols=251  Identities=16%  Similarity=0.099  Sum_probs=189.2

Q ss_pred             eEEEEEecCCCceEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        378 IACYTLLNARQQVTCAEISEDVS-ILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~-~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      .+.|+++.|...|..+.+.||.. ++.++-.       +++...++.+..+++         |..+.        ....-
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~v~sla~spd---------~~~~~--------~~l~s  132 (356)
T 2w18_A           77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALG-------NLEIREIRALFCSSD---------DESEK--------QVLLK  132 (356)
T ss_dssp             EEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------SSSEEEEEEECC---------------CC--------EEEEE
T ss_pred             eeeEEEeccCceeEEEEEcCcccceeeeeec-------cccccceEEEEECCC---------ccccc--------cEEEe
Confidence            68899999999999999999764 4433322       233333333433333         11111        11111


Q ss_pred             ecccCCEEEEEEcCCCCEEEEEe--CCCeEEEEEC-CCCeEEEEEecCCCCEEEEEEcC---CCCEEEEEECCCeEEEEE
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCS--QDNTIRLWSL-LLWRCLVVYKGHGHPVWDIKFSP---HGYYFASAGHDRMARLWA  530 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s--~Dg~V~iwdl-~t~~~~~~~~~h~~~V~~v~~sp---~g~~l~sgs~Dg~i~lwd  530 (711)
                      .+|...|.++   ++++.+.+++  .|++|++|++ .+++.+..+.+|...+..++|++   ++.+|++|+.|++|+|||
T Consensus       133 ~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWD  209 (356)
T 2w18_A          133 SGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWN  209 (356)
T ss_dssp             EEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEE
T ss_pred             CCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEE
Confidence            2344444444   4665555543  5999999999 55888889999999999999999   779999999999999999


Q ss_pred             CCCCceeEEeecCCC---CeeEEEEcCCCCEE------------EEEEcCCcEEEEECCCCcEEEEe-----eCCCCCeE
Q psy14440        531 TDSYHPLRLFVGHYS---DVDCVQFHPNSNYV------------ATGSSDRTIRLWDCVTGSHVRLL-----TGHKAPVY  590 (711)
Q Consensus       531 ~~~~~~~~~~~~h~~---~V~~v~~sp~~~~l------------atgs~Dg~I~iwD~~~~~~v~~~-----~~h~~~I~  590 (711)
                      +.+++.++++.+|..   .+.+++|+|+|.++            ++|+.|++|++||..+++.+..+     .+|...+.
T Consensus       210 l~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~l  289 (356)
T 2w18_A          210 LKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFL  289 (356)
T ss_dssp             TTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEE
T ss_pred             CCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeE
Confidence            999999999987543   57788999999886            56788999999999999988776     37776665


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEE-EEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        591 ALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVR-ALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       591 ~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~-sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      +..++  +.++++|+.||+|+|||+.+|+++.++.+|...+. +++|+|||++|++|+.|++|+|||+
T Consensus       290 sg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          290 EGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             ccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            55554  88999999999999999999999999999987655 5899999999999999999999996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=4.4e-27  Score=254.92  Aligned_cols=257  Identities=13%  Similarity=0.104  Sum_probs=210.6

Q ss_pred             CEEEEEeCCCeEEEEeCCCCcee----------eeccCcccccc-ccccCCcEEEEEecCCCeeEEEeecccCCEEEEEE
Q psy14440        400 SILAVGFSESYIKLWSLVPQKLK----------AMKSSDQLQDI-EMECDDILVRIMDERNAETTRTLVGHEGPVRKLSF  468 (711)
Q Consensus       400 ~~LatG~~dg~I~vWdl~~~~~~----------~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~f  468 (711)
                      .++++|+.|+.|++||+.++++.          .+..+.+...+ +.+..++.|++||..+++....+..|. .+.+++|
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~   81 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV   81 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEE
Confidence            35677777888888887665432          23334444444 344567788888888888877777665 8999999


Q ss_pred             cCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEE-EEEECCCeEEEEECCCCceeEEeecCCCC
Q psy14440        469 SPDRSLLLSC-SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYF-ASAGHDRMARLWATDSYHPLRLFVGHYSD  546 (711)
Q Consensus       469 spdg~~L~s~-s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l-~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~  546 (711)
                      ++++++|+++ +.|++|++||+.+++.+..+..+ ..+.+++|+++|+++ ++++.|+.|++||+.+++.+..+..+ ..
T Consensus        82 spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~  159 (391)
T 1l0q_A           82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RS  159 (391)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SS
T ss_pred             CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CC
Confidence            9999988655 46799999999999998888754 568999999999977 67888999999999999888888765 55


Q ss_pred             eeEEEEcCCCCEE-EEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCCCeEEE
Q psy14440        547 VDCVQFHPNSNYV-ATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAG---GDGNVHMWDLSNGHLLT  622 (711)
Q Consensus       547 V~~v~~sp~~~~l-atgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs---~Dg~I~iwDl~sg~~i~  622 (711)
                      +.+++|+|++++| ++++.++.|++||+++++.+..+. +...+.+++|+++|++|++++   .++.|++||+.+++.+.
T Consensus       160 ~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~  238 (391)
T 1l0q_A          160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA  238 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred             cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEE
Confidence            7999999999988 566788999999999998887776 556789999999999999888   68999999999999999


Q ss_pred             EeeCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEeCCCCC
Q psy14440        623 LLTGHTDVVRALCFSRDGNIL-ASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       623 ~l~~h~~~V~sl~fspdg~~L-asgs~Dg~V~iWdl~~~~  661 (711)
                      .+..|. .+.+++|+++|++| ++++.|+.|++||+.+..
T Consensus       239 ~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          239 RIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             EEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence            888765 47899999999977 677889999999998643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.7e-27  Score=261.85  Aligned_cols=256  Identities=13%  Similarity=0.066  Sum_probs=215.5

Q ss_pred             CccccccccccCCcEEEEEecCCCeeEE-----EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q psy14440        427 SDQLQDIEMECDDILVRIMDERNAETTR-----TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH  501 (711)
Q Consensus       427 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~-----~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h  501 (711)
                      +++...++.+..++.|++||..+++...     .+.+|.+.|.+++|+++++++++++.|+.|++||+.+++.+..+..|
T Consensus       131 s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~  210 (433)
T 3bws_A          131 IDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLT  210 (433)
T ss_dssp             SSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECS
T ss_pred             eCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCC
Confidence            3444455566678889999999888877     45589999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEE--------cCCcEEEEE
Q psy14440        502 GHPVWDIKFSPHGYYFASAG-HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS--------SDRTIRLWD  572 (711)
Q Consensus       502 ~~~V~~v~~sp~g~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs--------~Dg~I~iwD  572 (711)
                      ...+.+++|++++.++++++ .|+.|++||+++++.+..+..+ ..+.+++|+|++++|++++        .||.|++||
T Consensus       211 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d  289 (433)
T 3bws_A          211 GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS  289 (433)
T ss_dssp             SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred             CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence            99999999999999885554 8999999999999888877654 4599999999999999988        488999999


Q ss_pred             CCCCcEEEEeeCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC---
Q psy14440        573 CVTGSHVRLLTGHKAPVYALSFSVCGRFL-ASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ---  648 (711)
Q Consensus       573 ~~~~~~v~~~~~h~~~I~~la~spdg~~L-asgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~---  648 (711)
                      +.+++.+..+ .|...+.+++|+++|+++ ++++.|+.|++||+.+++.+..+. +...+.+++|+++|++|++++.   
T Consensus       290 ~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~  367 (433)
T 3bws_A          290 MDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPN  367 (433)
T ss_dssp             TTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCC
T ss_pred             CCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCC
Confidence            9999877765 456689999999999755 566899999999999999888876 6778999999999999988876   


Q ss_pred             ------------CCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        649 ------------DCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       649 ------------Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                                  ||.|++||+.+..                       .+..+.. ...+.+++|++++.+|+
T Consensus       368 ~~~~~~~~~g~~dg~v~~~d~~~~~-----------------------~~~~~~~-~~~~~~~~~s~dg~~l~  416 (433)
T 3bws_A          368 HPTEGYLKKGLVLGKVYVIDTTTDT-----------------------VKEFWEA-GNQPTGLDVSPDNRYLV  416 (433)
T ss_dssp             CTTTCTTSCCSSCCEEEEEETTTTE-----------------------EEEEEEC-SSSEEEEEECTTSCEEE
T ss_pred             ccccccccccccceEEEEEECCCCc-----------------------EEEEecC-CCCCceEEEcCCCCEEE
Confidence                        5799999986521                       2223333 34688999999998775

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.5e-28  Score=272.81  Aligned_cols=243  Identities=11%  Similarity=0.064  Sum_probs=194.6

Q ss_pred             eeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-
Q psy14440        421 LKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK-  499 (711)
Q Consensus       421 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~-  499 (711)
                      +..+.+++++..++.++.|++|+  |...+   ..+.+|.+.|++++|+|+|       .++++.+|+.+   ....+. 
T Consensus        18 v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~---~~~~~~~   82 (588)
T 2j04_A           18 KNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQ---QNGLLNS   82 (588)
T ss_dssp             SCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCC---SSCSSTT
T ss_pred             EEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCC---CceEeec
Confidence            34577888999999999999999  64444   3447999999999999998       45655555543   222222 


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCC-----CeeEEEEcCCCCEEEEEEcCCcEEEEECC
Q psy14440        500 GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-----DVDCVQFHPNSNYVATGSSDRTIRLWDCV  574 (711)
Q Consensus       500 ~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~-----~V~~v~~sp~~~~latgs~Dg~I~iwD~~  574 (711)
                      .|...|++++|+|+|.++|+++.||+|++||.+.  .+..+. |..     .|.+++|||+|++||+|+.||+|+|||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            4678899999999999999999999999999654  666666 665     59999999999999999999999999999


Q ss_pred             CCc-------EEEEe----eCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE---EEEe-eCCCCCEEEEEEeCC
Q psy14440        575 TGS-------HVRLL----TGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL---LTLL-TGHTDVVRALCFSRD  639 (711)
Q Consensus       575 ~~~-------~v~~~----~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~---i~~l-~~h~~~V~sl~fspd  639 (711)
                      ++.       .+.++    .+|.+.|.+++|+|||  +++++.|++|++||+.+++.   ...+ .+|...|.+++|+  
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--  235 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--  235 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence            886       36776    6788899999999999  88889999999999988773   3566 4788999999999  


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEE--ccCCeeee
Q psy14440        640 GNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIF--SRRNILLR  709 (711)
Q Consensus       640 g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~F--s~~n~lla  709 (711)
                      |+.||+++ +|+|++||+.....                       .....+|...|+.++|  +++++.|+
T Consensus       236 g~~LASa~-~~tIkLWd~~~~~~-----------------------~~~~~gh~~~V~~va~~~s~d~~~La  283 (588)
T 2j04_A          236 DYKVVLTC-PGYVHKIDLKNYSI-----------------------SSLKTGSLENFHIIPLNHEKESTILL  283 (588)
T ss_dssp             TTEEEEEC-SSEEEEEETTTTEE-----------------------EEEECSCCSCCCEEEETTCSSCEEEE
T ss_pred             CCEEEEEe-CCeEEEEECCCCeE-----------------------EEEEcCCCceEEEEEeeeCCCCCEEE
Confidence            68999997 79999999875221                       0111156677777777  77776665

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.6e-27  Score=251.27  Aligned_cols=223  Identities=17%  Similarity=0.178  Sum_probs=178.9

Q ss_pred             EEEEec-CCCceEEEEECCC----CCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEec-CCCeeE
Q psy14440        380 CYTLLN-ARQQVTCAEISED----VSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDE-RNAETT  453 (711)
Q Consensus       380 ~~tl~~-h~~~V~~l~fs~d----g~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~  453 (711)
                      +.++.+ +...|++++|++|    +.++++|+.+  +++|++.++++....         ....++.|++|+. .+++..
T Consensus       103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss---------~~g~d~~V~~~~~s~dG~~~  171 (356)
T 2w18_A          103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSS---------GTLSDQQVEVMTFAEDGGGK  171 (356)
T ss_dssp             EEEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEE---------SSSTTCEEEEEEECTTSCEE
T ss_pred             eeeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEec---------ccCCCCcEEEEEECCCCcee
Confidence            344444 4568999999999    9999998854  889998554432110         1225889999998 558888


Q ss_pred             EEeecccCCEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCeEEEEEecCC---CCEEEEEEcCCCCEE----------
Q psy14440        454 RTLVGHEGPVRKLSFSP---DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHG---HPVWDIKFSPHGYYF----------  517 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fsp---dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~---~~V~~v~~sp~g~~l----------  517 (711)
                      ..+.+|...++.++|++   ++..|++|+.|++|+|||+.+++++.++.+|.   ..+.+++|+|+|.++          
T Consensus       172 ~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w  251 (356)
T 2w18_A          172 ENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKE  251 (356)
T ss_dssp             EEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------
T ss_pred             eeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcc
Confidence            89999999999999999   78999999999999999999999999998754   367788999999876          


Q ss_pred             --EEEECCCeEEEEECCCCceeEEe-----ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeE
Q psy14440        518 --ASAGHDRMARLWATDSYHPLRLF-----VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVY  590 (711)
Q Consensus       518 --~sgs~Dg~i~lwd~~~~~~~~~~-----~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~  590 (711)
                        ++|+.|++|++||..+++.+..+     .+|...+.+..++  +.++|+|+.|++|+|||+.+++++.++.+|...+.
T Consensus       252 ~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vv  329 (356)
T 2w18_A          252 SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHW  329 (356)
T ss_dssp             ------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCC
T ss_pred             eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeE
Confidence              56889999999999999887765     3676665555544  88999999999999999999999999999987655


Q ss_pred             -EEEEecCCCEEEEEeCCCcEEEEEC
Q psy14440        591 -ALSFSVCGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       591 -~la~spdg~~Lasgs~Dg~I~iwDl  615 (711)
                       +++|||||++|++|+.|++|+|||+
T Consensus       330 s~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          330 SFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCcEEEecC
Confidence             5899999999999999999999995

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=4.3e-26  Score=251.41  Aligned_cols=288  Identities=15%  Similarity=0.119  Sum_probs=226.7

Q ss_pred             CCceEEEEECCCC-CEEEEEe----CCC----eEEEEeC--CCCcee-e--eccCc------------------------
Q psy14440        387 RQQVTCAEISEDV-SILAVGF----SES----YIKLWSL--VPQKLK-A--MKSSD------------------------  428 (711)
Q Consensus       387 ~~~V~~l~fs~dg-~~LatG~----~dg----~I~vWdl--~~~~~~-~--~~~~~------------------------  428 (711)
                      ...++..+|+..| .++++|+    .+|    .|+|||+  .+++.. .  +....                        
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            3578888998887 4666876    467    8999999  665532 1  11110                        


Q ss_pred             cccccccccCC------cEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeEEEEEe
Q psy14440        429 QLQDIEMECDD------ILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDN---TIRLWSLLLWRCLVVYK  499 (711)
Q Consensus       429 ~~~~l~~~~~d------~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg---~V~iwdl~t~~~~~~~~  499 (711)
                      ....++..+.+      +.|++||.. +...+.+.+|.+.|.+++|+|||++|++++.++   +|++||+.+++.. .+.
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~  219 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA  219 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee
Confidence            02233333332      799999986 455678889999999999999999999999885   9999999998875 466


Q ss_pred             cCCCCEEEEEEcCCCCEEE-EEECCCe--EEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEc-CC--cEEEEEC
Q psy14440        500 GHGHPVWDIKFSPHGYYFA-SAGHDRM--ARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS-DR--TIRLWDC  573 (711)
Q Consensus       500 ~h~~~V~~v~~sp~g~~l~-sgs~Dg~--i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~-Dg--~I~iwD~  573 (711)
                      .|...+.+++|+|+|++|+ +++.++.  |++||+.+++. ..+..|...+.+++|+|+|++|++++. ++  .|++||+
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~  298 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI  298 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence            7888999999999999888 6666554  99999998775 566778889999999999999998886 44  6888899


Q ss_pred             CCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCC
Q psy14440        574 VTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD---GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDC  650 (711)
Q Consensus       574 ~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D---g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg  650 (711)
                      .+++. ..+..|...+.+++|+|||++|++++.+   +.|++||+.+++.. .+..|. .+.+++|+|+|++|++++.|+
T Consensus       299 ~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          299 NGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             TSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEET
T ss_pred             CCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCC
Confidence            88874 4556677889999999999999988764   58999999998874 455554 889999999999999988877


Q ss_pred             ---cEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccC
Q psy14440        651 ---SVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRR  704 (711)
Q Consensus       651 ---~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~  704 (711)
                         .|++||+..                        ..+..+..+...|.+++|+|-
T Consensus       376 ~~~~l~~~d~~g------------------------~~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          376 MGSVLNLVSTDG------------------------RFKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             TEEEEEEEETTS------------------------CCEEECCCSSSEEEEEEECCC
T ss_pred             CccEEEEEECCC------------------------CcEEEeeCCCCCCcCCccccc
Confidence               799999753                        123346677889999999984

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=1.9e-25  Score=242.05  Aligned_cols=247  Identities=9%  Similarity=0.079  Sum_probs=207.1

Q ss_pred             cccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEc
Q psy14440        433 IEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLL-LSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFS  511 (711)
Q Consensus       433 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L-~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~s  511 (711)
                      ++.++.++.|++||..+++....+.+|.. +.+++|++++++| ++++.|++|++||+.+++.+..+..+. .+.+++|+
T Consensus         5 ~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~s   82 (391)
T 1l0q_A            5 YIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS   82 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred             EEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEEC
Confidence            45667899999999999999998887765 8999999999977 677789999999999999999888655 89999999


Q ss_pred             CCCCEEEEEE-CCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEE-EEEEcCCcEEEEECCCCcEEEEeeCCCCCe
Q psy14440        512 PHGYYFASAG-HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYV-ATGSSDRTIRLWDCVTGSHVRLLTGHKAPV  589 (711)
Q Consensus       512 p~g~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l-atgs~Dg~I~iwD~~~~~~v~~~~~h~~~I  589 (711)
                      |+++++++++ .++.|++||+.+++.+..+..+ ..+.+++|++++++| ++++.|+.|++||+.+++.+..+..| ..+
T Consensus        83 pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~  160 (391)
T 1l0q_A           83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSP  160 (391)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCc
Confidence            9999876554 6799999999999888877654 568999999999987 67778999999999999998888765 457


Q ss_pred             EEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEe---CCCcEEEEeCCCCCCccC
Q psy14440        590 YALSFSVCGRFL-ASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSG---QDCSVKLWDFAKLSDEVG  665 (711)
Q Consensus       590 ~~la~spdg~~L-asgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs---~Dg~V~iWdl~~~~~~~~  665 (711)
                      .+++|+++|++| ++++.++.|++||+++++.+..+. +...+.+++|+++|++|++++   .++.|++||+.+..    
T Consensus       161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~----  235 (391)
T 1l0q_A          161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK----  235 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE----
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe----
Confidence            999999999988 577788999999999999888776 456789999999999999888   68999999987521    


Q ss_pred             ccccccccccccccccccceeeecccCCcceEEEEEccCCeee
Q psy14440        666 TEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILL  708 (711)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~ll  708 (711)
                                         .+..+..+. .+.+++|++++.+|
T Consensus       236 -------------------~~~~~~~~~-~~~~~~~s~dg~~l  258 (391)
T 1l0q_A          236 -------------------ITARIPVGP-DPAGIAVTPDGKKV  258 (391)
T ss_dssp             -------------------EEEEEECCS-SEEEEEECTTSSEE
T ss_pred             -------------------EEEEEecCC-CccEEEEccCCCEE
Confidence                               122333333 46788888888654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=2.7e-26  Score=247.34  Aligned_cols=231  Identities=16%  Similarity=0.159  Sum_probs=182.6

Q ss_pred             ceEEEEECCCCCEE-EEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEE
Q psy14440        389 QVTCAEISEDVSIL-AVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLS  467 (711)
Q Consensus       389 ~V~~l~fs~dg~~L-atG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~  467 (711)
                      .+.+++++++++++ ++|+.|+.|+|||+.+                               ++.+..+. |...|.+++
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~-------------------------------~~~~~~~~-~~~~v~~v~  107 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK-------------------------------KQDVSRIK-VDAPVKDLF  107 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTT-------------------------------TEEEEEEE-CSSCEEEEE
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCC-------------------------------CcEEEEEE-CCCceEEEE
Confidence            57778888888777 4567778888888743                               34444444 567899999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCEEEEEEcCCCCEEEE--EECCCeEEEEECCCCc---------
Q psy14440        468 FSPDRSLLLSCSQDNTIRLWSLLLW-RCLVVYKGHGHPVWDIKFSPHGYYFAS--AGHDRMARLWATDSYH---------  535 (711)
Q Consensus       468 fspdg~~L~s~s~Dg~V~iwdl~t~-~~~~~~~~h~~~V~~v~~sp~g~~l~s--gs~Dg~i~lwd~~~~~---------  535 (711)
                      |+++.  ++++ .|+.|++||+.++ +.+..+..   ....+++++  .++++  |+.||.|++||+.++.         
T Consensus       108 ~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~  179 (355)
T 3vu4_A          108 LSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV  179 (355)
T ss_dssp             ECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-----------
T ss_pred             EcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccc
Confidence            98764  4444 4789999999887 65555544   444566666  56666  5799999999999765         


Q ss_pred             ------e-eEEeecCCCCeeEEEEcCCCCEEEEEEcCCc-EEEEECCCCcEEEEee-C-CCCCeEEEEEecCCCEEEEEe
Q psy14440        536 ------P-LRLFVGHYSDVDCVQFHPNSNYVATGSSDRT-IRLWDCVTGSHVRLLT-G-HKAPVYALSFSVCGRFLASAG  605 (711)
Q Consensus       536 ------~-~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~-I~iwD~~~~~~v~~~~-~-h~~~I~~la~spdg~~Lasgs  605 (711)
                            + +..+.+|...|.+++|+|++++|++|+.||+ |++||+++++++..+. + |.+.|++++|+|+|++|++|+
T Consensus       180 ~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s  259 (355)
T 3vu4_A          180 QQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS  259 (355)
T ss_dssp             -------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred             cccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence                  2 7888999999999999999999999999999 9999999999999998 6 999999999999999999999


Q ss_pred             CCCcEEEEECCCCeEE--EEee---------------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        606 GDGNVHMWDLSNGHLL--TLLT---------------------GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       606 ~Dg~I~iwDl~sg~~i--~~l~---------------------~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      .||+|+|||+..+...  ..+.                     .+......++|+++|++|++++.||.+++|++..
T Consensus       260 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          260 DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence            9999999999765311  1110                     1112236789999999999999999999999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=3e-25  Score=261.80  Aligned_cols=296  Identities=12%  Similarity=0.087  Sum_probs=228.5

Q ss_pred             CCceEEEEECCCCCEEEEEeC-CC-----eEEEEeCCCCceee-----------------------------------ec
Q psy14440        387 RQQVTCAEISEDVSILAVGFS-ES-----YIKLWSLVPQKLKA-----------------------------------MK  425 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~-dg-----~I~vWdl~~~~~~~-----------------------------------~~  425 (711)
                      ...|.+++|||||++||+++. |+     .|++|++.+++...                                   +.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            357999999999999999998 88     89999998765332                                   23


Q ss_pred             cCccccccccccCCcEEEEEecCCCe--eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q psy14440        426 SSDQLQDIEMECDDILVRIMDERNAE--TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGH  503 (711)
Q Consensus       426 ~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~  503 (711)
                      +++++..+++.+. +.|++||..++.  ....+..|.+.+.+++|||||++|++++. ++|++||+.+++.......+..
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCcc
Confidence            3445555655554 889999988773  45567788899999999999999999874 6899999999887765554443


Q ss_pred             C----------------EEEEEEcCCCCEEEEEECCC---------------------------------eEEEEECCC-
Q psy14440        504 P----------------VWDIKFSPHGYYFASAGHDR---------------------------------MARLWATDS-  533 (711)
Q Consensus       504 ~----------------V~~v~~sp~g~~l~sgs~Dg---------------------------------~i~lwd~~~-  533 (711)
                      .                +.+++|+|+|++|++++.|+                                 .|++||+.+ 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence            2                37799999999999998766                                 889999988 


Q ss_pred             CceeEEee--cCCCCeeEEEEcCCCCEEEEEEc-----CCcEEEEECCCCcEEEEeeCCCC----CeEEEEEecCCCEEE
Q psy14440        534 YHPLRLFV--GHYSDVDCVQFHPNSNYVATGSS-----DRTIRLWDCVTGSHVRLLTGHKA----PVYALSFSVCGRFLA  602 (711)
Q Consensus       534 ~~~~~~~~--~h~~~V~~v~~sp~~~~latgs~-----Dg~I~iwD~~~~~~v~~~~~h~~----~I~~la~spdg~~La  602 (711)
                      ++......  .|...+.+++| |||++|++++.     ++.|++||+.++++...+..+..    .+.+++|+|||++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~  352 (741)
T 2ecf_A          274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILW  352 (741)
T ss_dssp             CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred             CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence            77655543  37778999999 99999998764     56799999999998877766543    456899999999999


Q ss_pred             EEeCCCcEEEEECC-CCeEEEEeeCCCCCEEEE-EEeCCCCEEEE-EeCCC--cEEEEeCCCCCCccCcccccccccccc
Q psy14440        603 SAGGDGNVHMWDLS-NGHLLTLLTGHTDVVRAL-CFSRDGNILAS-SGQDC--SVKLWDFAKLSDEVGTEEVNLSHSADI  677 (711)
Q Consensus       603 sgs~Dg~I~iwDl~-sg~~i~~l~~h~~~V~sl-~fspdg~~Las-gs~Dg--~V~iWdl~~~~~~~~~~~~~~~~~~~~  677 (711)
                      +++.||.++||.+. +++ ...+..|...|.++ .|+++|+.|+. ++.++  .++||++.....               
T Consensus       353 ~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~---------------  416 (741)
T 2ecf_A          353 SSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG---------------  416 (741)
T ss_dssp             EECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC---------------
T ss_pred             EecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC---------------
Confidence            99999988888765 455 77888888888887 59999997755 44555  899999853111               


Q ss_pred             ccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        678 KNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       678 ~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                             .+..+.. ...+.+++||+|+..|+
T Consensus       417 -------~~~~l~~-~~~~~~~~~spdg~~l~  440 (741)
T 2ecf_A          417 -------QPQRLSK-APGMHSASFARNASVYV  440 (741)
T ss_dssp             -------CCEECCC-SCSEEEEEECTTSSEEE
T ss_pred             -------Ceeeccc-CCCceEEEECCCCCEEE
Confidence                   0111222 34567888888887765

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=1.6e-23  Score=238.76  Aligned_cols=296  Identities=11%  Similarity=0.048  Sum_probs=233.2

Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCCcee----------eeccCccccccccccCCcEEEEEec--CCCeeEEEeecccC
Q psy14440        394 EISEDVSILAVGFSESYIKLWSLVPQKLK----------AMKSSDQLQDIEMECDDILVRIMDE--RNAETTRTLVGHEG  461 (711)
Q Consensus       394 ~fs~dg~~LatG~~dg~I~vWdl~~~~~~----------~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~l~~h~~  461 (711)
                      +|++++.++++++.|++|.+||..+.++.          .+..+.+...+.+++.++.|.+||.  .+++.+..+.. ..
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~  222 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GI  222 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CS
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CC
Confidence            37889999999999999999999876542          2335566777888888899999999  78888888874 45


Q ss_pred             CEEEEEEcC----CCCEEEEEeC-CCeEEEEECCCCeEEEEEecC-----------CCCEEEEEEcCCCC-EEEEEECCC
Q psy14440        462 PVRKLSFSP----DRSLLLSCSQ-DNTIRLWSLLLWRCLVVYKGH-----------GHPVWDIKFSPHGY-YFASAGHDR  524 (711)
Q Consensus       462 ~V~~l~fsp----dg~~L~s~s~-Dg~V~iwdl~t~~~~~~~~~h-----------~~~V~~v~~sp~g~-~l~sgs~Dg  524 (711)
                      .+.+++|+|    ||++|++++. +++|.+||..+++++..+..+           ...+.++.+++++. ++++...++
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g  302 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  302 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence            679999999    9999999885 899999999999999888753           23789999999765 556667899


Q ss_pred             eEEEEECCCCceeE--EeecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEeeC----CCCCeEEEEEecC
Q psy14440        525 MARLWATDSYHPLR--LFVGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSHVRLLTG----HKAPVYALSFSVC  597 (711)
Q Consensus       525 ~i~lwd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~v~~~~~----h~~~I~~la~spd  597 (711)
                      +|.+||..+.+.+.  .+ .+...+.++.|+|+++++++++ .+++|.+||+.+++++..+..    |.+....+ ++|+
T Consensus       303 ~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~  380 (543)
T 1nir_A          303 KVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPK  380 (543)
T ss_dssp             EEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETT
T ss_pred             eEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCC
Confidence            99999998866544  33 3566788999999999877665 589999999999999988874    55444444 4677


Q ss_pred             -CCEEEEEe-CCCcEEEEECCC-------CeEEEEeeCCCCCEEEEEEeCCCCEEEEEe-------CCCcEEEEeCCCCC
Q psy14440        598 -GRFLASAG-GDGNVHMWDLSN-------GHLLTLLTGHTDVVRALCFSRDGNILASSG-------QDCSVKLWDFAKLS  661 (711)
Q Consensus       598 -g~~Lasgs-~Dg~I~iwDl~s-------g~~i~~l~~h~~~V~sl~fspdg~~Lasgs-------~Dg~V~iWdl~~~~  661 (711)
                       |.+++++. .|++|.|||+.+       ++++.++.+|.+.+..++|+|+|++|++++       .+++|.|||+.+..
T Consensus       381 ~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          381 YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD  460 (543)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             CccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence             66667765 689999999998       899999999998889999999999999987       27799999998765


Q ss_pred             CccCccccccccccccccccccceee---ecccCCcceEEEEEccCCeeee
Q psy14440        662 DEVGTEEVNLSHSADIKNSSLAYLVR---SYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      .....                 ..+.   ....+...|.++.|+++|..+.
T Consensus       461 ~~~~~-----------------~~v~~~~~~~~~~~~~~~~~~~~~g~~~~  494 (543)
T 1nir_A          461 AKYQV-----------------LPIAEWADLGEGAKRVVQPEYNKRGDEVW  494 (543)
T ss_dssp             SCCEE-----------------ECHHHHHCCCSSCCEEEEEEECSSSSEEE
T ss_pred             CCeEE-----------------eechhhcccCCCCCceEeccCCCCCCEEE
Confidence            32110                 0011   1233455788888888887664

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=3e-23  Score=236.55  Aligned_cols=280  Identities=15%  Similarity=0.085  Sum_probs=221.4

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeC--CCCce----------eeeccCc----ccccccccc-CCcEE
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSL--VPQKL----------KAMKSSD----QLQDIEMEC-DDILV  442 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl--~~~~~----------~~~~~~~----~~~~l~~~~-~d~~i  442 (711)
                      ..++..+.. +.+++||+||++|++++.|+.|++||+  .+.++          ..+..++    +...+.+++ .++.|
T Consensus       172 ~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v  250 (543)
T 1nir_A          172 VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQF  250 (543)
T ss_dssp             EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEE
T ss_pred             EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeE
Confidence            344542333 899999999999999999999999999  55442          2344555    666666665 47899


Q ss_pred             EEEecCCCeeEEEeecc----------cC-CEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeEEE--EEecCCCCEEEE
Q psy14440        443 RIMDERNAETTRTLVGH----------EG-PVRKLSFSPDRSL-LLSCSQDNTIRLWSLLLWRCLV--VYKGHGHPVWDI  508 (711)
Q Consensus       443 ~i~d~~~~~~~~~l~~h----------~~-~V~~l~fspdg~~-L~s~s~Dg~V~iwdl~t~~~~~--~~~~h~~~V~~v  508 (711)
                      .+||..+++.+..+..+          .+ .+.++.+++++.. ++++..+++|.+||+.+.+.+.  .+ .+...+.++
T Consensus       251 ~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~  329 (543)
T 1nir_A          251 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDG  329 (543)
T ss_dssp             EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCE
T ss_pred             EEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCc
Confidence            99999999988887652          23 7899999997764 5666778999999998765443  33 366778899


Q ss_pred             EEcCCCCEEEEEE-CCCeEEEEECCCCceeEEeec----CCCCeeEEEEcCC-CCEEEEEE-cCCcEEEEECCC------
Q psy14440        509 KFSPHGYYFASAG-HDRMARLWATDSYHPLRLFVG----HYSDVDCVQFHPN-SNYVATGS-SDRTIRLWDCVT------  575 (711)
Q Consensus       509 ~~sp~g~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~----h~~~V~~v~~sp~-~~~latgs-~Dg~I~iwD~~~------  575 (711)
                      .|+|+|++|++++ .+++|.+||..+++.+..+..    |.+....+ ++|+ +..+++++ .|++|.+||+.+      
T Consensus       330 ~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~  408 (543)
T 1nir_A          330 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY  408 (543)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred             eECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchh
Confidence            9999999877665 689999999999998887764    55444343 4777 55666665 589999999998      


Q ss_pred             -CcEEEEeeCCCCCeEEEEEecCCCEEEEEe-------CCCcEEEEECCCCeEE-EEe--------eCCCCCEEEEEEeC
Q psy14440        576 -GSHVRLLTGHKAPVYALSFSVCGRFLASAG-------GDGNVHMWDLSNGHLL-TLL--------TGHTDVVRALCFSR  638 (711)
Q Consensus       576 -~~~v~~~~~h~~~I~~la~spdg~~Lasgs-------~Dg~I~iwDl~sg~~i-~~l--------~~h~~~V~sl~fsp  638 (711)
                       +++++++.+|.+.+..++++|+|++|++++       .+++|.|||+.+++.. ..+        ..+...+..+.|++
T Consensus       409 ~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  488 (543)
T 1nir_A          409 AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK  488 (543)
T ss_dssp             BTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred             cCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC
Confidence             899999999998999999999999999987       2679999999998876 443        35677899999999


Q ss_pred             CCCEEEEEe-----CCCcEEEEeCCCCCC
Q psy14440        639 DGNILASSG-----QDCSVKLWDFAKLSD  662 (711)
Q Consensus       639 dg~~Lasgs-----~Dg~V~iWdl~~~~~  662 (711)
                      +|+.|+++.     .|+.|.|||..++..
T Consensus       489 ~g~~~~~s~~~~~~~~~~i~v~D~~t~~~  517 (543)
T 1nir_A          489 RGDEVWFSVWNGKNDSSALVVVDDKTLKL  517 (543)
T ss_dssp             SSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             CCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence            999888663     479999999987543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=9.6e-24  Score=217.21  Aligned_cols=246  Identities=15%  Similarity=0.119  Sum_probs=188.2

Q ss_pred             CcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEEecC-CCCEEEEEEcCCCCE
Q psy14440        439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL-WRCLVVYKGH-GHPVWDIKFSPHGYY  516 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t-~~~~~~~~~h-~~~V~~v~~sp~g~~  516 (711)
                      ++.|++||..+++.. .+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|+|++
T Consensus        21 ~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~   98 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGAL   98 (297)
T ss_dssp             CEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSE
T ss_pred             ceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCE
Confidence            344444444444433 4556889999999999999999987 78999999998 8777766666 367899999999999


Q ss_pred             EEEEE--CCCeEEEE--ECCCCceeEEeecCCCCeeEEEEcCCCCEEE-EEEcCCcEEEEECC-CCcEEEEeeCCCCCeE
Q psy14440        517 FASAG--HDRMARLW--ATDSYHPLRLFVGHYSDVDCVQFHPNSNYVA-TGSSDRTIRLWDCV-TGSHVRLLTGHKAPVY  590 (711)
Q Consensus       517 l~sgs--~Dg~i~lw--d~~~~~~~~~~~~h~~~V~~v~~sp~~~~la-tgs~Dg~I~iwD~~-~~~~v~~~~~h~~~I~  590 (711)
                      |++++  .++...+|  +..++. ...+..+ ..+.+++|+|++++|+ +++.++.++||++. .+.....+..|...+.
T Consensus        99 l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  176 (297)
T 2ojh_A           99 YAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRND  176 (297)
T ss_dssp             EEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEE
T ss_pred             EEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccc
Confidence            99999  33455555  555544 3444433 3489999999999887 67789999999863 2334566777888999


Q ss_pred             EEEEecCCCEEEEEe-CCCcEEEEECC-CCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC-----------CcEEEEeC
Q psy14440        591 ALSFSVCGRFLASAG-GDGNVHMWDLS-NGHLLTLLTGHTDVVRALCFSRDGNILASSGQD-----------CSVKLWDF  657 (711)
Q Consensus       591 ~la~spdg~~Lasgs-~Dg~I~iwDl~-sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D-----------g~V~iWdl  657 (711)
                      +++|+|+|++|++++ .++.+.||++. .+..+..+..|...+.+++|+++|++|++++.+           +.|++||+
T Consensus       177 ~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~  256 (297)
T 2ojh_A          177 GPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM  256 (297)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred             cceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence            999999999888766 58999999886 566677788888889999999999999988876           56999998


Q ss_pred             CCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        658 AKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      ....                     ...+..+..+...|.+++|++++..|+
T Consensus       257 ~~~~---------------------~~~~~~~~~~~~~~~~~~~spdg~~l~  287 (297)
T 2ojh_A          257 DGGN---------------------VETLFDLFGGQGTMNSPNWSPDGDEFA  287 (297)
T ss_dssp             TSCS---------------------CEEEEEEEESTTTSCSCCBCTTSSEEE
T ss_pred             CCCC---------------------ceeeeccCCCCcccccceECCCCCEEE
Confidence            6421                     112333445677888999999998776

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=3.8e-22  Score=212.18  Aligned_cols=265  Identities=11%  Similarity=0.024  Sum_probs=207.6

Q ss_pred             CCCceEEEEECCCCCEEEEEeCC-------CeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSE-------SYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~d-------g~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      ....+..++|++||+++++++.+       +.|.+||..                               +++....+..
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~-------------------------------~~~~~~~~~~   87 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV-------------------------------TLEVTQAIHN   87 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT-------------------------------TCCEEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC-------------------------------CCeEEEEEec
Confidence            34678899999999998888754       456666654                               3333344332


Q ss_pred             ccCCEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCC---------EEEEEEcCCCCEEEEEE--CCCeE
Q psy14440        459 HEGPVRKLSFSPDRSLLLSC-SQDNTIRLWSLLLWRCLVVYKGHGHP---------VWDIKFSPHGYYFASAG--HDRMA  526 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~-s~Dg~V~iwdl~t~~~~~~~~~h~~~---------V~~v~~sp~g~~l~sgs--~Dg~i  526 (711)
                       ...+.+++|+++|++++++ ..++.|.+||..+++.+..+..+...         +.+++|+++|+++++++  .++.|
T Consensus        88 -~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i  166 (353)
T 3vgz_A           88 -DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVI  166 (353)
T ss_dssp             -SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEE
T ss_pred             -CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceE
Confidence             2346789999999966555 55799999999999998888765432         78999999999877776  48899


Q ss_pred             EEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC----CCCCeEEEEEecCCCEEE
Q psy14440        527 RLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG----HKAPVYALSFSVCGRFLA  602 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~----h~~~I~~la~spdg~~La  602 (711)
                      .+||..+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.+++.+..+..    +...+.+++|+|+|++|+
T Consensus       167 ~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  246 (353)
T 3vgz_A          167 WVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF  246 (353)
T ss_dssp             EEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred             EEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence            9999999998888876667789999999999999999999999999999998877764    556788999999999887


Q ss_pred             EEeC-CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCCCccCccccccccccccccc
Q psy14440        603 SAGG-DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSG-QDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNS  680 (711)
Q Consensus       603 sgs~-Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs-~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~  680 (711)
                      +++. ++.|.+||+.+++.+..+.....  .+++|+++|+++++++ .++.|.+||+.+..                   
T Consensus       247 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-------------------  305 (353)
T 3vgz_A          247 ITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYK-------------------  305 (353)
T ss_dssp             EEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTE-------------------
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCe-------------------
Confidence            7765 48999999999999888875443  5799999999665555 68999999986522                   


Q ss_pred             cccceeeecccCCcceEEEEEccCCeee
Q psy14440        681 SLAYLVRSYKTKASPLLHLIFSRRNILL  708 (711)
Q Consensus       681 ~~~~~l~~~~t~~~pV~~v~Fs~~n~ll  708 (711)
                          .+..+... ..+.+++|+++|.+|
T Consensus       306 ----~~~~~~~~-~~~~~~~~s~dg~~l  328 (353)
T 3vgz_A          306 ----VVKTFDTP-THPNSLALSADGKTL  328 (353)
T ss_dssp             ----EEEEEECC-SEEEEEEECTTSCEE
T ss_pred             ----EEEEEecC-CCCCeEEEcCCCCEE
Confidence                12223332 356889999998744

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=7.4e-23  Score=251.28  Aligned_cols=321  Identities=12%  Similarity=0.031  Sum_probs=246.1

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCC--CCceeee---------ccCccccccccccCCcEEEEEecCC
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLV--PQKLKAM---------KSSDQLQDIEMECDDILVRIMDERN  449 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~--~~~~~~~---------~~~~~~~~l~~~~~d~~i~i~d~~~  449 (711)
                      ..+.+|...+.++.|+++ .++++++.++.++||.+.  +.....+         ..++++..++.. .++.+++|+...
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~  274 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDT  274 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence            445789999999999998 777888889999999764  3332222         233445555554 478899999844


Q ss_pred             CeeEEEeec-----------ccCCEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC-CEEEEEEcCCCCE
Q psy14440        450 AETTRTLVG-----------HEGPVRKLSFS-PDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGH-PVWDIKFSPHGYY  516 (711)
Q Consensus       450 ~~~~~~l~~-----------h~~~V~~l~fs-pdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~-~V~~v~~sp~g~~  516 (711)
                      .. +..+.+           |.+.|.+++|+ |||++|++++ ++.|.+|++.++.... +..|.. .+.+++|+ +|+.
T Consensus       275 ~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~  350 (1045)
T 1k32_A          275 EK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVA  350 (1045)
T ss_dssp             CC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEE
T ss_pred             eE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCe
Confidence            43 335555           44578999999 9999999988 7899999998876544 556777 89999999 9999


Q ss_pred             EEEEECCCeEE-EEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEe
Q psy14440        517 FASAGHDRMAR-LWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFS  595 (711)
Q Consensus       517 l~sgs~Dg~i~-lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~s  595 (711)
                      |++++.++.+. +|+..+++..... +|...+.+++|+|+|++|++++.++.|++||+.+++....+.+|.+.+.+++||
T Consensus       351 l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S  429 (1045)
T 1k32_A          351 FIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS  429 (1045)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             EEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC
Confidence            99999988898 9999887655444 888899999999999999999999999999999999888887899999999999


Q ss_pred             cCCCEEEEEeCCC----------cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccC
Q psy14440        596 VCGRFLASAGGDG----------NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVG  665 (711)
Q Consensus       596 pdg~~Lasgs~Dg----------~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~  665 (711)
                      |||++|++++.++          .|++||+.+++ +..+..|...+.+++|++||++|++++.++..++|+.....-...
T Consensus       430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~  508 (1045)
T 1k32_A          430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE  508 (1045)
T ss_dssp             TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECC
T ss_pred             CCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccc
Confidence            9999999887654          89999999988 677888888899999999999999999999999998764321110


Q ss_pred             cc-cc-----ccc-ccc-------------ccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        666 TE-EV-----NLS-HSA-------------DIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       666 ~~-~~-----~~~-~~~-------------~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      .. ..     ... ...             .+........+..+..+...+..++|++++.+++
T Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~  572 (1045)
T 1k32_A          509 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY  572 (1045)
T ss_dssp             SCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEE
T ss_pred             cCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEE
Confidence            00 00     000 000             0111111223445666777899999999998554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=1.7e-22  Score=222.66  Aligned_cols=224  Identities=16%  Similarity=0.105  Sum_probs=185.3

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCC---eEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSES---YIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg---~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      ...+.+|...|.+++|||||++||+++.++   .|++||+.+++                               . ..+
T Consensus       171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~-------------------------------~-~~l  218 (415)
T 2hqs_A          171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-------------------------------V-RQV  218 (415)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-------------------------------E-EEE
T ss_pred             CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc-------------------------------E-EEe
Confidence            456778899999999999999999999875   88888875432                               2 245


Q ss_pred             ecccCCEEEEEEcCCCCEEE-EEeCCCe--EEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEEC-CC--eEEEEE
Q psy14440        457 VGHEGPVRKLSFSPDRSLLL-SCSQDNT--IRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH-DR--MARLWA  530 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~-s~s~Dg~--V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~-Dg--~i~lwd  530 (711)
                      ..|.+.+.+++|+|||++|+ +++.|+.  |++||+.+++. ..+..|...+.+++|+|+|++|++++. ++  .|++||
T Consensus       219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d  297 (415)
T 2hqs_A          219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  297 (415)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence            56788999999999999888 6666654  99999998776 566678889999999999999998886 44  688889


Q ss_pred             CCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcC---CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC
Q psy14440        531 TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD---RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       531 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D---g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D  607 (711)
                      +.+++. ..+..+...+.+++|+|+|++|++++.+   +.|++||+.+++.. .+..+. .+.+++|+|||++|++++.+
T Consensus       298 ~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~  374 (415)
T 2hqs_A          298 INGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQ  374 (415)
T ss_dssp             TTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEE
T ss_pred             CCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcC
Confidence            988764 4455677789999999999999988864   58999999998864 555554 89999999999999998877


Q ss_pred             C---cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCC
Q psy14440        608 G---NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDG  640 (711)
Q Consensus       608 g---~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg  640 (711)
                      +   .|++||+. ++....+.+|.+.|.+++|+|.-
T Consensus       375 ~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          375 GMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             TTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred             CCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence            7   79999986 56677889999999999999864

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=7.8e-24  Score=248.87  Aligned_cols=268  Identities=14%  Similarity=0.096  Sum_probs=201.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce--------------eeeccCccccccccccC---------CcEEEEE
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKL--------------KAMKSSDQLQDIEMECD---------DILVRIM  445 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~--------------~~~~~~~~~~~l~~~~~---------d~~i~i~  445 (711)
                      .+.+++||+||+++++ +.||.|++||+.+++.              ..+..++++..++.+..         ++.+++|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4668899999998876 6899999999876543              23345566666666554         3788899


Q ss_pred             ecCCCeeEEEee---cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCE-----------------
Q psy14440        446 DERNAETTRTLV---GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV-----------------  505 (711)
Q Consensus       446 d~~~~~~~~~l~---~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V-----------------  505 (711)
                      |..+++. +.+.   +|...+.+++|||||+.|++++. ++|++||+.+++.......+...+                 
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~  174 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence            9988775 3443   44455899999999999999886 789999999988877666544433                 


Q ss_pred             -EEEEEcCCCCEEEEEECCC----------------------------------eEEEEECCCCceeEEeecC------C
Q psy14440        506 -WDIKFSPHGYYFASAGHDR----------------------------------MARLWATDSYHPLRLFVGH------Y  544 (711)
Q Consensus       506 -~~v~~sp~g~~l~sgs~Dg----------------------------------~i~lwd~~~~~~~~~~~~h------~  544 (711)
                       .+++|+|+|++|++++.|+                                  +|++||+.+++....+..+      .
T Consensus       175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~  254 (723)
T 1xfd_A          175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE  254 (723)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred             cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence             7899999999999988653                                  7999999988765666554      5


Q ss_pred             CCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCCcEEEEeeC-CCCCeE----EEEEecCCCEEEE--EeCCC-----
Q psy14440        545 SDVDCVQFHPNSNYVATGSSD----RTIRLWDCVTGSHVRLLTG-HKAPVY----ALSFSVCGRFLAS--AGGDG-----  608 (711)
Q Consensus       545 ~~V~~v~~sp~~~~latgs~D----g~I~iwD~~~~~~v~~~~~-h~~~I~----~la~spdg~~Las--gs~Dg-----  608 (711)
                      ..+.+++|+|||++|++.+..    ..|++||+.++++...+.. +.+.+.    +++|||||++|+.  +..+|     
T Consensus       255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  334 (723)
T 1xfd_A          255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF  334 (723)
T ss_dssp             EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred             ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcce
Confidence            678999999999998777543    5799999999988777654 334443    7899999997775  45666     


Q ss_pred             -cEEEEE-CCCCe--EEEEeeCCCCCEEE-EEEeCCCCEEEEEeCC---CcEEEEeCCC
Q psy14440        609 -NVHMWD-LSNGH--LLTLLTGHTDVVRA-LCFSRDGNILASSGQD---CSVKLWDFAK  659 (711)
Q Consensus       609 -~I~iwD-l~sg~--~i~~l~~h~~~V~s-l~fspdg~~Lasgs~D---g~V~iWdl~~  659 (711)
                       .|.+|| ..+++  +...+..+...+.. ++|++||+.|+..+.+   +.++||++..
T Consensus       335 ~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          335 YHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             EEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred             eEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence             577788 44444  14445433344544 6999999999876665   7899999864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=5e-22  Score=209.94  Aligned_cols=246  Identities=15%  Similarity=0.188  Sum_probs=183.5

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCC-CeEEEEeCC--CCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSE-SYIKLWSLV--PQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~d-g~I~vWdl~--~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      .....|...+.+++|+++|++|++++.+ +.|++|++.  ++.+                             ..+..+.
T Consensus        31 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-----------------------------~~~~~~~   81 (343)
T 1ri6_A           31 TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-----------------------------TFAAESA   81 (343)
T ss_dssp             EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-----------------------------EEEEEEE
T ss_pred             eeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-----------------------------eeccccc
Confidence            3345677889999999999999888886 899999985  2221                             1222333


Q ss_pred             cccCCEEEEEEcCCCCEEEEEeC-CCeEEEEEC---CCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEECC
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQ-DNTIRLWSL---LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG-HDRMARLWATD  532 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~-Dg~V~iwdl---~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs-~Dg~i~lwd~~  532 (711)
                      .+. .+.+++|++++++|++++. ++.|.+||+   .+.+.+..+.. ...+.+++|+|+|+++++++ .++.|++||+.
T Consensus        82 ~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  159 (343)
T 1ri6_A           82 LPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVS  159 (343)
T ss_dssp             CSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             cCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence            333 7789999999998877765 889999999   44455555554 34588999999999888887 89999999998


Q ss_pred             C-CceeE----Eeec-CCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCC--CcE--EEEee----CC--CCCeEEEEEe
Q psy14440        533 S-YHPLR----LFVG-HYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVT--GSH--VRLLT----GH--KAPVYALSFS  595 (711)
Q Consensus       533 ~-~~~~~----~~~~-h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~--~~~--v~~~~----~h--~~~I~~la~s  595 (711)
                      + ++...    .+.. ....+.+++|+|+++++++++ .++.|++||+..  ++.  ...+.    ++  ...+.+++|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s  239 (343)
T 1ri6_A          160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT  239 (343)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred             CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence            7 54432    2222 345788999999999876665 789999999953  432  22222    11  2357789999


Q ss_pred             cCCCEEEEE-eCCCcEEEEECC--C--CeEEEEeeCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEeCC
Q psy14440        596 VCGRFLASA-GGDGNVHMWDLS--N--GHLLTLLTGHTDVVRALCFSRDGNILASSG-QDCSVKLWDFA  658 (711)
Q Consensus       596 pdg~~Lasg-s~Dg~I~iwDl~--s--g~~i~~l~~h~~~V~sl~fspdg~~Lasgs-~Dg~V~iWdl~  658 (711)
                      ++|++|+++ ..++.|.+||+.  +  .+.+..+..+.. +.+++|+++|++|++++ .++.|.+|++.
T Consensus       240 ~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          240 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            999988754 478999999998  3  345556665554 88999999999888887 68999999765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=5.8e-23  Score=211.36  Aligned_cols=237  Identities=16%  Similarity=0.154  Sum_probs=185.6

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCC-CceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVP-QKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      ...+..|...|.+++|+|||++|++++ ++.|++|++.+ .+..                               ....+
T Consensus        34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-------------------------------~~~~~   81 (297)
T 2ojh_A           34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-------------------------------KVDTG   81 (297)
T ss_dssp             EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-------------------------------ECCCT
T ss_pred             eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-------------------------------Eeccc
Confidence            345667889999999999999999987 78999999865 4322                               22223


Q ss_pred             c-cCCEEEEEEcCCCCEEEEEe--CCCeEEEE--ECCCCeEEEEEecCCCCEEEEEEcCCCCEEE-EEECCCeEEEEECC
Q psy14440        459 H-EGPVRKLSFSPDRSLLLSCS--QDNTIRLW--SLLLWRCLVVYKGHGHPVWDIKFSPHGYYFA-SAGHDRMARLWATD  532 (711)
Q Consensus       459 h-~~~V~~l~fspdg~~L~s~s--~Dg~V~iw--dl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~-sgs~Dg~i~lwd~~  532 (711)
                      | ...|.+++|+|++++|++++  .++.+.||  ++.++. ...+.. ...+.+++|+|++++++ +++.++.+++|+++
T Consensus        82 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~  159 (297)
T 2ojh_A           82 FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMD  159 (297)
T ss_dssp             TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEE
Confidence            3 36788999999999999998  33445555  555544 333433 33589999999999887 77889999999864


Q ss_pred             C-CceeEEeecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECC-CCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC--
Q psy14440        533 S-YHPLRLFVGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCV-TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD--  607 (711)
Q Consensus       533 ~-~~~~~~~~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~-~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D--  607 (711)
                      . ......+..+...+.+++|+|++++|++++ .++.+++|++. .+..+..+..|...+.+++|+|+|++|++++.+  
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  239 (297)
T 2ojh_A          160 IDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDAD  239 (297)
T ss_dssp             TTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETT
T ss_pred             CCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCC
Confidence            2 234556667888999999999999988777 48999999986 566778888888899999999999999988765  


Q ss_pred             ---------CcEEEEECCCCeE--EEEeeCCCCCEEEEEEeCCCCEEEEEeCCC
Q psy14440        608 ---------GNVHMWDLSNGHL--LTLLTGHTDVVRALCFSRDGNILASSGQDC  650 (711)
Q Consensus       608 ---------g~I~iwDl~sg~~--i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg  650 (711)
                               +.|++||+.+++.  +..+.+|...+.+++|+++|++|++++.|.
T Consensus       240 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          240 VFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             CCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                     5699999988865  445557888899999999999998887664

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=1.1e-22  Score=249.65  Aligned_cols=299  Identities=11%  Similarity=0.044  Sum_probs=226.0

Q ss_pred             EEEEecCCCce-------EEEEECCCCCEEEEEeCC------CeEEEEeCCCCceeeeccCc------------------
Q psy14440        380 CYTLLNARQQV-------TCAEISEDVSILAVGFSE------SYIKLWSLVPQKLKAMKSSD------------------  428 (711)
Q Consensus       380 ~~tl~~h~~~V-------~~l~fs~dg~~LatG~~d------g~I~vWdl~~~~~~~~~~~~------------------  428 (711)
                      ...+..|...+       .+++|||||+++++++.+      ..|.+|++.++....+....                  
T Consensus        92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~  171 (1045)
T 1k32_A           92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF  171 (1045)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred             eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence            45567777777       999999999988887754      45778887665543221110                  


Q ss_pred             -----------------------------------------cccccccccCCcEEEEEecCC-CeeEEEeecccCCEEEE
Q psy14440        429 -----------------------------------------QLQDIEMECDDILVRIMDERN-AETTRTLVGHEGPVRKL  466 (711)
Q Consensus       429 -----------------------------------------~~~~l~~~~~d~~i~i~d~~~-~~~~~~l~~h~~~V~~l  466 (711)
                                                               ....+..+..++.+.+|.... +...+.+..|. .+.++
T Consensus       172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~  250 (1045)
T 1k32_A          172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPR  250 (1045)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEE
T ss_pred             CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-Cccee
Confidence                                                     001112233345556665432 33445566565 46778


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-----------CCCCEEEEEEc-CCCCEEEEEECCCeEEEEECCCC
Q psy14440        467 SFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG-----------HGHPVWDIKFS-PHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       467 ~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~-----------h~~~V~~v~~s-p~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      +|+|||++|++++ ++.|++|++.... +..+.+           |...+.+++|+ |+|+++++++ ++.+++|+...+
T Consensus       251 ~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~  327 (1045)
T 1k32_A          251 HLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT  327 (1045)
T ss_dssp             EEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS
T ss_pred             eEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC
Confidence            9999999998874 8999999995443 335444           33468999999 9999999888 889999999877


Q ss_pred             ceeEEeecCCC-CeeEEEEcCCCCEEEEEEcCCcEE-EEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q psy14440        535 HPLRLFVGHYS-DVDCVQFHPNSNYVATGSSDRTIR-LWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHM  612 (711)
Q Consensus       535 ~~~~~~~~h~~-~V~~v~~sp~~~~latgs~Dg~I~-iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~i  612 (711)
                      .... +..|.. .+.+++|+ +|+.|++++.++.+. +||+.+++... +.+|...+.+++|||||++|++++.++.|++
T Consensus       328 ~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~  404 (1045)
T 1k32_A          328 YVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMT  404 (1045)
T ss_dssp             BEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEE
Confidence            6544 566777 89999999 999999999888898 99998877544 4488889999999999999999999999999


Q ss_pred             EECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCC----------cEEEEeCCCCCCccCccccccccccccccccc
Q psy14440        613 WDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDC----------SVKLWDFAKLSDEVGTEEVNLSHSADIKNSSL  682 (711)
Q Consensus       613 wDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg----------~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~  682 (711)
                      ||+.+++....+.+|.+.+.+++|||||++|++++.++          .|++||+....                     
T Consensus       405 ~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---------------------  463 (1045)
T 1k32_A          405 VDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---------------------  463 (1045)
T ss_dssp             EETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---------------------
T ss_pred             EECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc---------------------
Confidence            99999998888888999999999999999999887754          89999986421                     


Q ss_pred             cceeeecccCCcceEEEEEccCCeeee
Q psy14440        683 AYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       683 ~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                         +..+..+...+.+++|+++|..|+
T Consensus       464 ---~~~l~~~~~~~~~~~~spdG~~l~  487 (1045)
T 1k32_A          464 ---IFAATTENSHDYAPAFDADSKNLY  487 (1045)
T ss_dssp             ---EEECSCSSSBEEEEEECTTSCEEE
T ss_pred             ---EEEeeCCCcccCCceEcCCCCEEE
Confidence               122334455677788888888765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=1.6e-21  Score=206.06  Aligned_cols=264  Identities=11%  Similarity=0.107  Sum_probs=195.6

Q ss_pred             EECCCCC-EEEEEeCCCeEEEEeCCCCceee----------eccCccccccccc-cCCcEEEEEecCCCee-EEEeeccc
Q psy14440        394 EISEDVS-ILAVGFSESYIKLWSLVPQKLKA----------MKSSDQLQDIEME-CDDILVRIMDERNAET-TRTLVGHE  460 (711)
Q Consensus       394 ~fs~dg~-~LatG~~dg~I~vWdl~~~~~~~----------~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~-~~~l~~h~  460 (711)
                      .|..+++ +++++..++.|++||+.++++..          +..+++...+.+. ..++.+.+||..+++. ...+..+.
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~   83 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ   83 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence            4555554 46778888999999998766432          2233344434333 3477899999988887 77777777


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEE-EEECCCe-EEEEECCCCc
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDN---TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFA-SAGHDRM-ARLWATDSYH  535 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg---~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~-sgs~Dg~-i~lwd~~~~~  535 (711)
                      .++.+++|+++|++|+++..++   .|.+||+.+++.+..+.. .....+++|+|+|++++ ++..++. +.+|+++...
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g  162 (331)
T 3u4y_A           84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG  162 (331)
T ss_dssp             SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred             CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence            7776699999999999655553   899999999999888775 44568999999998554 4456688 9999988644


Q ss_pred             ee----EEeecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcE---EEEeeCCCCCeEEEEEecCCCEEEEEe-C
Q psy14440        536 PL----RLFVGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSH---VRLLTGHKAPVYALSFSVCGRFLASAG-G  606 (711)
Q Consensus       536 ~~----~~~~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~---v~~~~~h~~~I~~la~spdg~~Lasgs-~  606 (711)
                      .+    ...........+++|+|+|+++++++ .++.|++||+.+++.   +..+.. ...+.+++|+|||++|++++ .
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~  241 (331)
T 3u4y_A          163 VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTES  241 (331)
T ss_dssp             CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSS
T ss_pred             cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcC
Confidence            33    12223455689999999999766655 588999999999988   777764 36678999999999877665 5


Q ss_pred             CCcEEEEECCCCeE--EEEeeCC----C---CCEEEEEEeCCCCEEEEEeC-CCcEEEEeCCC
Q psy14440        607 DGNVHMWDLSNGHL--LTLLTGH----T---DVVRALCFSRDGNILASSGQ-DCSVKLWDFAK  659 (711)
Q Consensus       607 Dg~I~iwDl~sg~~--i~~l~~h----~---~~V~sl~fspdg~~Lasgs~-Dg~V~iWdl~~  659 (711)
                      ++.|.+||+.+++.  +..+..+    .   .....++|++||++|++++. ++.|++||+..
T Consensus       242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence            78899999999987  5444433    2   12356899999998866554 66999999975

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=2.2e-21  Score=204.93  Aligned_cols=200  Identities=14%  Similarity=0.198  Sum_probs=152.2

Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCC-CeEEEEECC--CCe--EEEEEecCCCCEEEEEEcCCCCEEEEEEC-CCeEEEEEC
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQD-NTIRLWSLL--LWR--CLVVYKGHGHPVWDIKFSPHGYYFASAGH-DRMARLWAT  531 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~D-g~V~iwdl~--t~~--~~~~~~~h~~~V~~v~~sp~g~~l~sgs~-Dg~i~lwd~  531 (711)
                      .|...+.+++|+|++++|++++.+ +.|++|++.  +++  .+..+..+. .+.+++|+++|+++++++. ++.|.+||+
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            466788999999999999998886 999999997  444  444555444 7889999999998877765 889999999


Q ss_pred             C---CCceeEEeecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCC-CcEEE----EeeC-CCCCeEEEEEecCCCEE
Q psy14440        532 D---SYHPLRLFVGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVT-GSHVR----LLTG-HKAPVYALSFSVCGRFL  601 (711)
Q Consensus       532 ~---~~~~~~~~~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~-~~~v~----~~~~-h~~~I~~la~spdg~~L  601 (711)
                      +   ..+.+..+.. ...+.+++|+|+++++++++ .++.|++||+.+ ++...    .+.. ....+.+++|+|+|++|
T Consensus       114 ~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l  192 (343)
T 1ri6_A          114 EDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  192 (343)
T ss_dssp             ETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             CCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence            4   3344444443 34689999999999988888 899999999987 65432    2232 34578899999999977


Q ss_pred             EEEe-CCCcEEEEECC--CCeE--EEEee----CC--CCCEEEEEEeCCCCEEEE-EeCCCcEEEEeCCC
Q psy14440        602 ASAG-GDGNVHMWDLS--NGHL--LTLLT----GH--TDVVRALCFSRDGNILAS-SGQDCSVKLWDFAK  659 (711)
Q Consensus       602 asgs-~Dg~I~iwDl~--sg~~--i~~l~----~h--~~~V~sl~fspdg~~Las-gs~Dg~V~iWdl~~  659 (711)
                      ++++ .++.|.+||+.  +++.  ...+.    ++  ...+.+++|+++|++|++ ++.++.|++||+..
T Consensus       193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  262 (343)
T ss_dssp             EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence            6555 78999999995  3433  33332    11  235778999999988774 44799999999873

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=5.3e-22  Score=232.85  Aligned_cols=262  Identities=16%  Similarity=0.141  Sum_probs=193.7

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCce--ee---------------------------eccCccccccccccCCc
Q psy14440        390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKL--KA---------------------------MKSSDQLQDIEMECDDI  440 (711)
Q Consensus       390 V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~--~~---------------------------~~~~~~~~~l~~~~~d~  440 (711)
                      +..+.|+  |+.+++++.++ | +||+.+++.  ..                           +..+++ ..++.. .++
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence            4456777  56677777777 8 999877655  22                           223334 333333 358


Q ss_pred             EEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CeEEEEEecCCCC-----------
Q psy14440        441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL-----WRCLVVYKGHGHP-----------  504 (711)
Q Consensus       441 ~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t-----~~~~~~~~~h~~~-----------  504 (711)
                      .+++||..+++. ..+..+.+.+.+++|||||++|+++ .|++|++||+.+     ++.......+...           
T Consensus       102 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee  179 (706)
T 2z3z_A          102 GLVGFDMLARKV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE  179 (706)
T ss_dssp             EEEEEETTTTEE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred             EEEEEECCCCce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence            899999887765 4455677889999999999999985 679999999998     7766554444333           


Q ss_pred             ---EEEEEEcCCCCEEEEEE---------------------------------CCCeEEEEECCCCceeEEee--cCCCC
Q psy14440        505 ---VWDIKFSPHGYYFASAG---------------------------------HDRMARLWATDSYHPLRLFV--GHYSD  546 (711)
Q Consensus       505 ---V~~v~~sp~g~~l~sgs---------------------------------~Dg~i~lwd~~~~~~~~~~~--~h~~~  546 (711)
                         +.++.|+|+|++|++++                                 .+..|++||+.+++......  .|...
T Consensus       180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  259 (706)
T 2z3z_A          180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF  259 (706)
T ss_dssp             TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred             cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence               47899999999999998                                 45789999999887655443  46677


Q ss_pred             eeEEEEcCCCCEEEEEEcCC-----cEEEEECCCCcEEEEee--CCCC---CeEEEEEec--CCCEEEEEeCCCcEEEEE
Q psy14440        547 VDCVQFHPNSNYVATGSSDR-----TIRLWDCVTGSHVRLLT--GHKA---PVYALSFSV--CGRFLASAGGDGNVHMWD  614 (711)
Q Consensus       547 V~~v~~sp~~~~latgs~Dg-----~I~iwD~~~~~~v~~~~--~h~~---~I~~la~sp--dg~~Lasgs~Dg~I~iwD  614 (711)
                      +.+++|+|||++|++++.++     .|++||+.+++..+.+.  .+..   .+.+++|+|  ||++|++++.||.++||+
T Consensus       260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~  339 (706)
T 2z3z_A          260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL  339 (706)
T ss_dssp             EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred             EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence            99999999999999988776     89999999994444332  2222   246789999  999999999999999998


Q ss_pred             CC-CCeEEEEeeCCCCCEEE-EEEeCCCCEEEEEeCC-C----cEEEEeCCC
Q psy14440        615 LS-NGHLLTLLTGHTDVVRA-LCFSRDGNILASSGQD-C----SVKLWDFAK  659 (711)
Q Consensus       615 l~-sg~~i~~l~~h~~~V~s-l~fspdg~~Lasgs~D-g----~V~iWdl~~  659 (711)
                      +. +++.+..+..|...+.+ ++|+++|+.|+.++.+ +    .|..||+..
T Consensus       340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  391 (706)
T 2z3z_A          340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG  391 (706)
T ss_dssp             EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred             EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence            76 67778888888877877 7999999987766554 3    455556543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=1.8e-21  Score=228.36  Aligned_cols=269  Identities=14%  Similarity=0.118  Sum_probs=207.1

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee----------eccCccccccccccCCcEEEEEecCC-----Cee
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKA----------MKSSDQLQDIEMECDDILVRIMDERN-----AET  452 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~----------~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~  452 (711)
                      ..|.+++||+| +.++.+. ++.|++||+.+++...          +.+++++..++. ..++.|++|+..+     ++.
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~  158 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRA  158 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCc
Confidence            57999999999 6666554 5999999998766443          234455666666 4678999999988     766


Q ss_pred             EEEeecccCC--------------EEEEEEcCCCCEEEEEe---------------------------------CCCeEE
Q psy14440        453 TRTLVGHEGP--------------VRKLSFSPDRSLLLSCS---------------------------------QDNTIR  485 (711)
Q Consensus       453 ~~~l~~h~~~--------------V~~l~fspdg~~L~s~s---------------------------------~Dg~V~  485 (711)
                      ......+...              +.+++|||||++|++++                                 .++.|+
T Consensus       159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~  238 (706)
T 2z3z_A          159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG  238 (706)
T ss_dssp             EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred             EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence            6555544443              48999999999999987                                 446799


Q ss_pred             EEECCCCeEEEEEe--cCCCCEEEEEEcCCCCEEEEEECCC-----eEEEEECCCCceeEEee-c-CCC---CeeEEEEc
Q psy14440        486 LWSLLLWRCLVVYK--GHGHPVWDIKFSPHGYYFASAGHDR-----MARLWATDSYHPLRLFV-G-HYS---DVDCVQFH  553 (711)
Q Consensus       486 iwdl~t~~~~~~~~--~h~~~V~~v~~sp~g~~l~sgs~Dg-----~i~lwd~~~~~~~~~~~-~-h~~---~V~~v~~s  553 (711)
                      +||+.+++......  .|...+.+++|+|+|++|++++.++     .|++||+.+++..+.+. . +..   .+.+++|+
T Consensus       239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s  318 (706)
T 2z3z_A          239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFL  318 (706)
T ss_dssp             EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceee
Confidence            99999988765543  4667899999999999999988776     99999999984444332 2 222   24678999


Q ss_pred             C--CCCEEEEEEcCCcEEEEECC-CCcEEEEeeCCCCCeEE-EEEecCCCEEEEEeC-CC----cEEEEECCCCeEEEEe
Q psy14440        554 P--NSNYVATGSSDRTIRLWDCV-TGSHVRLLTGHKAPVYA-LSFSVCGRFLASAGG-DG----NVHMWDLSNGHLLTLL  624 (711)
Q Consensus       554 p--~~~~latgs~Dg~I~iwD~~-~~~~v~~~~~h~~~I~~-la~spdg~~Lasgs~-Dg----~I~iwDl~sg~~i~~l  624 (711)
                      |  +|+++++++.|+.++||++. ++..++.+..|...+.+ ++|+++|+.|+.++. ++    .|..||+.+++ ...+
T Consensus       319 p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l  397 (706)
T 2z3z_A          319 PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL  397 (706)
T ss_dssp             TTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES
T ss_pred             cCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec
Confidence            9  99999999999999999886 67778888888888887 799999998876554 43    67778887776 3344


Q ss_pred             eCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEeCCCCC
Q psy14440        625 TGHTDVVRALCFSRDGNILASSGQD----CSVKLWDFAKLS  661 (711)
Q Consensus       625 ~~h~~~V~sl~fspdg~~Lasgs~D----g~V~iWdl~~~~  661 (711)
                      . |...+.+++|++||++|+.++.+    +.|++||+....
T Consensus       398 ~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          398 T-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             C-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             c-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            3 66779999999999988876544    569999987643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=7.3e-22  Score=232.87  Aligned_cols=235  Identities=15%  Similarity=0.084  Sum_probs=191.1

Q ss_pred             eeeeccCccccccccccC-Cc-----EEEEEecCCCeeEEEeecccCC------------------------EEEEEEcC
Q psy14440        421 LKAMKSSDQLQDIEMECD-DI-----LVRIMDERNAETTRTLVGHEGP------------------------VRKLSFSP  470 (711)
Q Consensus       421 ~~~~~~~~~~~~l~~~~~-d~-----~i~i~d~~~~~~~~~l~~h~~~------------------------V~~l~fsp  470 (711)
                      +..+.+++++..++..+. ++     .|++||..+++....+..|...                        |.+++|||
T Consensus        39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp  118 (741)
T 2ecf_A           39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP  118 (741)
T ss_dssp             CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred             CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence            445566677777777666 66     8999999998887777665433                        88999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCC--
Q psy14440        471 DRSLLLSCSQDNTIRLWSLLLWR--CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSD--  546 (711)
Q Consensus       471 dg~~L~s~s~Dg~V~iwdl~t~~--~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~--  546 (711)
                      ||++|++++. ++|++||+.++.  ....+..|...+.+++|+|+|++|++++ ++.|++||+.+++..+....+...  
T Consensus       119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~  196 (741)
T 2ecf_A          119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIG  196 (741)
T ss_dssp             TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEE
T ss_pred             CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcccee
Confidence            9999999987 899999998872  3445666788899999999999999988 569999999988776655544432  


Q ss_pred             --------------eeEEEEcCCCCEEEEEEcCC---------------------------------cEEEEECCC-CcE
Q psy14440        547 --------------VDCVQFHPNSNYVATGSSDR---------------------------------TIRLWDCVT-GSH  578 (711)
Q Consensus       547 --------------V~~v~~sp~~~~latgs~Dg---------------------------------~I~iwD~~~-~~~  578 (711)
                                    +.+++|+|||++|++++.|+                                 .|++||+.+ ++.
T Consensus       197 ~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~  276 (741)
T 2ecf_A          197 NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT  276 (741)
T ss_dssp             ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC
T ss_pred             ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce
Confidence                          47899999999999998765                                 789999998 876


Q ss_pred             EEEee--CCCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECCCCeEEEEeeCCCC----CEEEEEEeCCCCEEEEEe
Q psy14440        579 VRLLT--GHKAPVYALSFSVCGRFLASAGG-----DGNVHMWDLSNGHLLTLLTGHTD----VVRALCFSRDGNILASSG  647 (711)
Q Consensus       579 v~~~~--~h~~~I~~la~spdg~~Lasgs~-----Dg~I~iwDl~sg~~i~~l~~h~~----~V~sl~fspdg~~Lasgs  647 (711)
                      .....  .|...+.+++| |||++|++++.     ++.|++||+.+++....+..+..    .+.+++|++||+++++++
T Consensus       277 ~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~  355 (741)
T 2ecf_A          277 QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSE  355 (741)
T ss_dssp             EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEEC
T ss_pred             EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEec
Confidence            65543  37788999999 99999997754     56899999999998777766543    456899999999999999


Q ss_pred             CCCcEEEEeCC
Q psy14440        648 QDCSVKLWDFA  658 (711)
Q Consensus       648 ~Dg~V~iWdl~  658 (711)
                      .||.++||.+.
T Consensus       356 ~~g~~~l~~~~  366 (741)
T 2ecf_A          356 RTGFQHLYRID  366 (741)
T ss_dssp             TTSSCEEEEEC
T ss_pred             CCCccEEEEEc
Confidence            99999999875

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=5.1e-21  Score=201.61  Aligned_cols=255  Identities=10%  Similarity=-0.001  Sum_probs=192.9

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceee-------------eccCcccccc-ccccCCcEEEEEecCCCeeEEEeec-c----c
Q psy14440        400 SILAVGFSESYIKLWSLVPQKLKA-------------MKSSDQLQDI-EMECDDILVRIMDERNAETTRTLVG-H----E  460 (711)
Q Consensus       400 ~~LatG~~dg~I~vWdl~~~~~~~-------------~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~l~~-h----~  460 (711)
                      ++|++++.++.|++||+.+.+...             +..+.+...+ +....++.|.+||..+++....+.. +    .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            467777788888888876654322             1122233233 3334566788888777777665543 2    2


Q ss_pred             CCEEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEE
Q psy14440        461 GPVRKLSFSPDRSLLLSCS------------QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARL  528 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s------------~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~l  528 (711)
                      ..+.+++|+++|++|++++            .++.|.+||+.+++.+..+.. ...+.+++|+|+|++++++  ++.|++
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence            2577899999999999886            579999999999998887775 5567889999999988888  689999


Q ss_pred             EECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCC------------------------cEEEEECCCCcEE-EEee
Q psy14440        529 WATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR------------------------TIRLWDCVTGSHV-RLLT  583 (711)
Q Consensus       529 wd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg------------------------~I~iwD~~~~~~v-~~~~  583 (711)
                      ||+.+++.+..+..+.. ...+.|+|++.+++.++.++                        .|.+||+.+++.. ..+.
T Consensus       159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  237 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR  237 (337)
T ss_dssp             EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred             EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence            99999988777664431 11337889988776554332                        4789999998875 2334


Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        584 GHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       584 ~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      .+...+.+++|+++|++|+++  ++.|.+||+.+++.+..+..+ ..+.+++|+++|++|++++.++.|++||+.+..
T Consensus       238 ~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence            566788999999999999988  689999999999988887744 457899999999999999999999999997643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=8.9e-21  Score=200.33  Aligned_cols=225  Identities=13%  Similarity=0.086  Sum_probs=179.2

Q ss_pred             cccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeE-EEEEecCCCCEEEEEE
Q psy14440        433 IEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQ-DNTIRLWSLLLWRC-LVVYKGHGHPVWDIKF  510 (711)
Q Consensus       433 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~-Dg~V~iwdl~t~~~-~~~~~~h~~~V~~v~~  510 (711)
                      ++....++.|.+||..+++....+..+...+ +++|+++|++|++++. ++.|.+||+.+++. ...+..+..+..+++|
T Consensus        13 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   91 (331)
T 3u4y_A           13 IVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDI   91 (331)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEE
T ss_pred             EEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEE
Confidence            4556678899999999999888887777777 9999999997777666 88999999999887 7777777777766999


Q ss_pred             cCCCCEEEEEECCC---eEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEE-EcCCc-EEEEECCCCcEE----EE
Q psy14440        511 SPHGYYFASAGHDR---MARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATG-SSDRT-IRLWDCVTGSHV----RL  581 (711)
Q Consensus       511 sp~g~~l~sgs~Dg---~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latg-s~Dg~-I~iwD~~~~~~v----~~  581 (711)
                      +|+|++++++..++   .|++||+.+++.+..+.. .....+++|+|+|++++++ ..++. |.+|++.....+    ..
T Consensus        92 s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~  170 (331)
T 3u4y_A           92 TPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE  170 (331)
T ss_dssp             CTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred             CCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc
Confidence            99999999655553   899999999988887764 4457899999999866555 55588 999998764433    12


Q ss_pred             eeCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeE---EEEeeCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEe
Q psy14440        582 LTGHKAPVYALSFSVCGRFLASAG-GDGNVHMWDLSNGHL---LTLLTGHTDVVRALCFSRDGNILASSG-QDCSVKLWD  656 (711)
Q Consensus       582 ~~~h~~~I~~la~spdg~~Lasgs-~Dg~I~iwDl~sg~~---i~~l~~h~~~V~sl~fspdg~~Lasgs-~Dg~V~iWd  656 (711)
                      .........+++|+|+|++|++++ .++.|.+||+.+++.   +..+..+ ..+.+++|++||++|++++ .++.|.+||
T Consensus       171 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d  249 (331)
T 3u4y_A          171 FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFN  249 (331)
T ss_dssp             EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEE
T ss_pred             cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEE
Confidence            223455689999999999766554 688999999999887   7777644 5678999999999776654 578899999


Q ss_pred             CCCC
Q psy14440        657 FAKL  660 (711)
Q Consensus       657 l~~~  660 (711)
                      +.+.
T Consensus       250 ~~~~  253 (331)
T 3u4y_A          250 QLSG  253 (331)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            8763

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=1.5e-21  Score=216.52  Aligned_cols=253  Identities=15%  Similarity=0.161  Sum_probs=182.8

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEE
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLS  467 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~  467 (711)
                      ..++++++++++.++++|+.++ |+||+......  ....        ......+  .....    .....|.+.|++++
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~--~~~~--------~~~~~~~--~~~~~----~~~~~~~~~v~~l~   99 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLI--QNKP--------GDDPNKI--VDKVQ----GLLVPMKFPIHHLA   99 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCC--CCCT--------TCCTTCE--EECCC----CEEECCSSCEEEEE
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhh--hccc--------ccCcccc--cccCc----cccccCCCcccEEE
Confidence            4588999999999999999988 99988632110  0000        0000000  00000    11234678899999


Q ss_pred             EcCCCCEEE----EEeCCCeEEEEECCCC--------e---EEEEEecCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEC
Q psy14440        468 FSPDRSLLL----SCSQDNTIRLWSLLLW--------R---CLVVYKGHGHPVWDIKFSPH-GYYFASAGHDRMARLWAT  531 (711)
Q Consensus       468 fspdg~~L~----s~s~Dg~V~iwdl~t~--------~---~~~~~~~h~~~V~~v~~sp~-g~~l~sgs~Dg~i~lwd~  531 (711)
                      |+++|++|+    +|+.|++|+|||+.++        +   .+..+.+|...|++++|+|+ +++|++++.||+|++||+
T Consensus       100 ~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~  179 (434)
T 2oit_A          100 LSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQV  179 (434)
T ss_dssp             ECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEE
T ss_pred             EcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEc
Confidence            999999999    7889999999998654        1   24566779999999999997 889999999999999999


Q ss_pred             CCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC-------CCCeEEEEEecCCCEEEEE
Q psy14440        532 DSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH-------KAPVYALSFSVCGRFLASA  604 (711)
Q Consensus       532 ~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h-------~~~I~~la~spdg~~Lasg  604 (711)
                      +++..+....+|...|.+++|+|+|++|++|+.||+|++||++ ++....+..|       ...|.+++|++++.++++.
T Consensus       180 ~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~  258 (434)
T 2oit_A          180 TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVY  258 (434)
T ss_dssp             SSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred             CCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEE
Confidence            9987777777889999999999999999999999999999998 6666666544       2379999999999887654


Q ss_pred             -eCCC------cEEEEECCCCe-----EEEEee-------CCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEeCC
Q psy14440        605 -GGDG------NVHMWDLSNGH-----LLTLLT-------GHTDVVRALCFSRDGNILASSGQ-DCSVKLWDFA  658 (711)
Q Consensus       605 -s~Dg------~I~iwDl~sg~-----~i~~l~-------~h~~~V~sl~fspdg~~Lasgs~-Dg~V~iWdl~  658 (711)
                       +.||      .+++||+.+.+     ....+.       +....-..+.+-++.+++++++. .+.|.|....
T Consensus       259 ~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          259 AAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             EETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             ccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence             3443      38999998642     222221       12222334444477776666554 4557777643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=2.9e-20  Score=198.25  Aligned_cols=249  Identities=15%  Similarity=0.169  Sum_probs=179.8

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeC--CCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFS--ESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~--dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      ....+......++|++||++++++..  ++.|.+|++.++..                             +.+..+..+
T Consensus        34 ~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~-----------------------------~~~~~~~~~   84 (347)
T 3hfq_A           34 GLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTA-----------------------------HKLNTVVAP   84 (347)
T ss_dssp             EEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEE-----------------------------EEEEEEEEE
T ss_pred             eeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcE-----------------------------EEeeeeecC
Confidence            34455677888999999994444432  68899998743322                             123344456


Q ss_pred             cCCEEEEEEcCCCCEEEEEe-CCCeEEEEECC-C--CeEEEEEecC---------CCCEEEEEEcCCCCEEEEEECCCeE
Q psy14440        460 EGPVRKLSFSPDRSLLLSCS-QDNTIRLWSLL-L--WRCLVVYKGH---------GHPVWDIKFSPHGYYFASAGHDRMA  526 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s-~Dg~V~iwdl~-t--~~~~~~~~~h---------~~~V~~v~~sp~g~~l~sgs~Dg~i  526 (711)
                      ...+..++|++||++|++++ .+++|.+|++. +  ...+..+...         ...+.+++|+|+|+.++++..++.|
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v  164 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKV  164 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEE
Confidence            67788999999999998888 68999999996 2  2333333321         2348899999999966666778999


Q ss_pred             EEEECC-CCceeE--Eeec-CCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCC--CcE--EEEeeCCC------CCeEE
Q psy14440        527 RLWATD-SYHPLR--LFVG-HYSDVDCVQFHPNSNYVATG-SSDRTIRLWDCVT--GSH--VRLLTGHK------APVYA  591 (711)
Q Consensus       527 ~lwd~~-~~~~~~--~~~~-h~~~V~~v~~sp~~~~latg-s~Dg~I~iwD~~~--~~~--v~~~~~h~------~~I~~  591 (711)
                      ++|+++ +++...  .+.. .......++|+|+|++++++ ..++.|++|++..  ++.  +..+....      ..+..
T Consensus       165 ~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  244 (347)
T 3hfq_A          165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAA  244 (347)
T ss_dssp             EEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEE
T ss_pred             EEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCccee
Confidence            999998 444322  2222 23467889999999977665 5678999999874  543  22333222      35889


Q ss_pred             EEEecCCCEEE-EEeCCCcEEEEECC---CCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC-CcEEEEeCCC
Q psy14440        592 LSFSVCGRFLA-SAGGDGNVHMWDLS---NGHLLTLLTGHTDVVRALCFSRDGNILASSGQD-CSVKLWDFAK  659 (711)
Q Consensus       592 la~spdg~~La-sgs~Dg~I~iwDl~---sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D-g~V~iWdl~~  659 (711)
                      ++|+|||++|+ ++..++.|.+||+.   ..+.+..+..+...+.+++|++||++|++++.+ +.|.+|++..
T Consensus       245 i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          245 IRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             EEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            99999999885 55568999999997   235666777777778999999999988888765 8999997653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=1.2e-21  Score=224.86  Aligned_cols=229  Identities=12%  Similarity=-0.009  Sum_probs=177.4

Q ss_pred             CceEEEEECCCCCEEEEEeC-CCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc-CCEEE
Q psy14440        388 QQVTCAEISEDVSILAVGFS-ESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE-GPVRK  465 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~-dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-~~V~~  465 (711)
                      ..|++++|++||+.||+++. ||.++||++.+++                                .+.+..|. ..|.+
T Consensus        22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--------------------------------~~~lt~~~~~~~~~   69 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--------------------------------TVKLNREPINSVLD   69 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--------------------------------EEECCSSCCSEECE
T ss_pred             cchheeecCCCCCeEEEEEccCCceeEEEEcCCC--------------------------------cEeeeccccccccc
Confidence            35899999999999999887 9999999964322                                23344444 68999


Q ss_pred             EEEcCCCCEEEEEeC---CCeEEEEECCC---CeEEEEEecCCCCEEEEEEcCCCC--EEEEEECCCeEEEEECCCCcee
Q psy14440        466 LSFSPDRSLLLSCSQ---DNTIRLWSLLL---WRCLVVYKGHGHPVWDIKFSPHGY--YFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       466 l~fspdg~~L~s~s~---Dg~V~iwdl~t---~~~~~~~~~h~~~V~~v~~sp~g~--~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      ++|+|| +.+++++.   +...++|.+..   +... .+.. ...+...+|+++|+  .+++++.+ .+.+||+++++..
T Consensus        70 ~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~  145 (582)
T 3o4h_A           70 PHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLR  145 (582)
T ss_dssp             ECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEE
T ss_pred             ccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEE
Confidence            999999 77777765   45556655432   2222 3322 22344668888775  44444444 4559999988766


Q ss_pred             EEeecCCCCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCC--cEE
Q psy14440        538 RLFVGHYSDVDCVQFHPNSNYVATGSSD----RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG--NVH  611 (711)
Q Consensus       538 ~~~~~h~~~V~~v~~sp~~~~latgs~D----g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg--~I~  611 (711)
                      +....+.   .+++|+|||++|++++.+    +.|++||+.+++.. .+.+|.+.+.+++|||||++|++++.+|  .|+
T Consensus       146 ~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~  221 (582)
T 3o4h_A          146 ELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLV  221 (582)
T ss_dssp             EEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEE
T ss_pred             EeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEE
Confidence            6554443   899999999999988877    78999999988754 6678889999999999999999888888  899


Q ss_pred             EEECCCCeEEEEeeCCCCCEEEEE--------EeCCCCEEEEEeCCCcEEEEeC
Q psy14440        612 MWDLSNGHLLTLLTGHTDVVRALC--------FSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       612 iwDl~sg~~i~~l~~h~~~V~sl~--------fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      +||+.+++.. .+.+|...+.+++        |+|||.++++++.||+++||++
T Consensus       222 ~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          222 TVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             EEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            9999999888 7778877777777        9999999999999999999998

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.87  E-value=1.7e-20  Score=198.87  Aligned_cols=231  Identities=12%  Similarity=0.080  Sum_probs=180.1

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc-CCEEEEEEcC
Q psy14440        392 CAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE-GPVRKLSFSP  470 (711)
Q Consensus       392 ~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-~~V~~l~fsp  470 (711)
                      .+++++++.++++++.++.|++||+.+.+                               ....+..+. ..+.+++|++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~-------------------------------~~~~~~~~~~~~~~~~~~s~   52 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDT-------------------------------VYKSCVMPDKFGPGTAMMAP   52 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTE-------------------------------EEEEEECSSCCSSCEEEECT
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCc-------------------------------EEEEEecCCCCCCceeEECC
Confidence            45788899999999999999999986433                               233333222 2467899999


Q ss_pred             CCCEEE-EEeCCCeEEEEECCCCeEEEEEecCC------CCEEEEEEcCCCCEEEEEECC------------CeEEEEEC
Q psy14440        471 DRSLLL-SCSQDNTIRLWSLLLWRCLVVYKGHG------HPVWDIKFSPHGYYFASAGHD------------RMARLWAT  531 (711)
Q Consensus       471 dg~~L~-s~s~Dg~V~iwdl~t~~~~~~~~~h~------~~V~~v~~sp~g~~l~sgs~D------------g~i~lwd~  531 (711)
                      +|++++ +++.++.|.+||+.+++.+..+..+.      ..+.+++|+|+|+++++++.+            +.|.+||+
T Consensus        53 dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~  132 (349)
T 1jmx_B           53 DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST  132 (349)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred             CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEEC
Confidence            998665 45568999999999999888776432      237789999999999998865            99999999


Q ss_pred             CCCc---eeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCC----------------------
Q psy14440        532 DSYH---PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHK----------------------  586 (711)
Q Consensus       532 ~~~~---~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~----------------------  586 (711)
                      .+++   .+..+. +...+.+++|+|+++ +++++  +.|++||+.+++.+..+..+.                      
T Consensus       133 ~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (349)
T 1jmx_B          133 ADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRH  208 (349)
T ss_dssp             GGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTC
T ss_pred             CCccccceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcce
Confidence            8743   334443 344689999999999 55553  459999999998877665331                      


Q ss_pred             ----------------------------------------------CCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCe
Q psy14440        587 ----------------------------------------------APVYALSFSV-CGRFLASAGGDGNVHMWDLSNGH  619 (711)
Q Consensus       587 ----------------------------------------------~~I~~la~sp-dg~~Lasgs~Dg~I~iwDl~sg~  619 (711)
                                                                    ..+.+++|+| +|++|+++  ++.|.+||+.+++
T Consensus       209 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~  286 (349)
T 1jmx_B          209 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK  286 (349)
T ss_dssp             EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred             eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence                                                          1345677889 99999988  8899999999999


Q ss_pred             EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        620 LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       620 ~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      .+..+... ..+.+++|+++|++|++++.++.|++||+.+.
T Consensus       287 ~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          287 LIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             EEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             EEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence            88887643 34679999999998888888999999999764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=1.1e-19  Score=193.03  Aligned_cols=230  Identities=13%  Similarity=0.036  Sum_probs=185.3

Q ss_pred             CCceEEEEECCCCCEEE-EEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc-----
Q psy14440        387 RQQVTCAEISEDVSILA-VGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE-----  460 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~La-tG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-----  460 (711)
                      ...+.+++|++||++++ ++..++.|.+||..+.+..                               ..+..+.     
T Consensus        88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~-------------------------------~~~~~~~~~~~~  136 (353)
T 3vgz_A           88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK-------------------------------GRLVLDDRKRTE  136 (353)
T ss_dssp             SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE-------------------------------EEEESCCCCCCS
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE-------------------------------EEEecCCCcccc
Confidence            34578899999999555 4555789999998654432                               2222221     


Q ss_pred             ----CCEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        461 ----GPVRKLSFSPDRSLLLSCS--QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       461 ----~~V~~l~fspdg~~L~s~s--~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                          ..+.+++|+++++++++++  .++.|.+||+.+++.+..+..+...+.+++|+++|+++++++.++.+.+||..++
T Consensus       137 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~  216 (353)
T 3vgz_A          137 EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN  216 (353)
T ss_dssp             SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT
T ss_pred             ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence                1268899999999888776  4789999999999999888866777889999999999999999999999999999


Q ss_pred             ceeEEeec----CCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEe-CCC
Q psy14440        535 HPLRLFVG----HYSDVDCVQFHPNSNYVATGSS-DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAG-GDG  608 (711)
Q Consensus       535 ~~~~~~~~----h~~~V~~v~~sp~~~~latgs~-Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs-~Dg  608 (711)
                      +.+..+..    +...+.+++|+|+++++++++. ++.|.+||..+++.+..+.....  .+++|+++|+++++++ .++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~  294 (353)
T 3vgz_A          217 KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAG  294 (353)
T ss_dssp             EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTT
T ss_pred             eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCC
Confidence            88877664    5556888999999998877775 48999999999998888775442  5799999999766655 689


Q ss_pred             cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCC
Q psy14440        609 NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDC  650 (711)
Q Consensus       609 ~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg  650 (711)
                      .|.+||+.+++.+..+..+ ..+.+++|+++|++|++++.++
T Consensus       295 ~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          295 KVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred             eEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence            9999999999998888754 4689999999999777776554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=4.3e-21  Score=212.73  Aligned_cols=200  Identities=14%  Similarity=0.136  Sum_probs=162.8

Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------eEEE-----EEecCCCCEEEEEEcCCCCEEE----EE
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW----------RCLV-----VYKGHGHPVWDIKFSPHGYYFA----SA  520 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~----------~~~~-----~~~~h~~~V~~v~~sp~g~~l~----sg  520 (711)
                      ...+..+++++++.++++++.|+ |++|+....          ..+.     ....+...|.+++|+++|++|+    +|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34578899999999999999988 999875311          0111     1123567899999999999999    78


Q ss_pred             ECCCeEEEEECCCC--------ce---eEEeecCCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCC
Q psy14440        521 GHDRMARLWATDSY--------HP---LRLFVGHYSDVDCVQFHPN-SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAP  588 (711)
Q Consensus       521 s~Dg~i~lwd~~~~--------~~---~~~~~~h~~~V~~v~~sp~-~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~  588 (711)
                      +.|++|++||+++.        ++   ++.+.+|...|.+++|+|+ +++|++|+.||+|++||++++..+....+|...
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~  194 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA  194 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence            88999999998654        22   4566679999999999997 899999999999999999999887777889999


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCC-------CCEEEEEEeCCCCEEEEE-eCCCc------EEE
Q psy14440        589 VYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHT-------DVVRALCFSRDGNILASS-GQDCS------VKL  654 (711)
Q Consensus       589 I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~-------~~V~sl~fspdg~~Lasg-s~Dg~------V~i  654 (711)
                      |++++|+|+|++|++|+.||+|++||++ ++....+..|.       ..|.+++|++++.++++. +.||.      +++
T Consensus       195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i  273 (434)
T 2oit_A          195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM  273 (434)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence            9999999999999999999999999998 66666665443       379999999988877553 34443      999


Q ss_pred             EeCCCCC
Q psy14440        655 WDFAKLS  661 (711)
Q Consensus       655 Wdl~~~~  661 (711)
                      |++.+..
T Consensus       274 ~~l~~~~  280 (434)
T 2oit_A          274 ALLPKKE  280 (434)
T ss_dssp             EECCCTT
T ss_pred             EEeccCC
Confidence            9998643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=4e-19  Score=190.67  Aligned_cols=242  Identities=10%  Similarity=0.125  Sum_probs=175.0

Q ss_pred             CCCceEEEEECCCCCEEEEEeCC----CeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCC--eeEEEeecc
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSE----SYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNA--ETTRTLVGH  459 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~d----g~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~l~~h  459 (711)
                      +......++|++||++|++++.+    +.|.+|++...                             ++  +.+.....+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~-----------------------------~g~~~~~~~~~~~   98 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE-----------------------------KGTLHLLNTQKTM   98 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT-----------------------------TTEEEEEEEEECS
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC-----------------------------CCcEEEeeEeccC
Confidence            66778889999999999998876    78999987431                             11  122233334


Q ss_pred             cCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeEEE------EEec--------CCCCEEEEEEcCCCCEEEEEE-CC
Q psy14440        460 EGPVRKLSFSPDRSLLLSCS-QDNTIRLWSLLLWRCLV------VYKG--------HGHPVWDIKFSPHGYYFASAG-HD  523 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s-~Dg~V~iwdl~t~~~~~------~~~~--------h~~~V~~v~~sp~g~~l~sgs-~D  523 (711)
                      ......+++  ++++|++++ .+++|.+|++.....+.      ...+        +...+.+++|+|+|+++++++ .+
T Consensus        99 ~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  176 (361)
T 3scy_A           99 GADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT  176 (361)
T ss_dssp             SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT
T ss_pred             CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC
Confidence            556777888  888887776 57899999996433221      1111        123458899999999776655 58


Q ss_pred             CeEEEEECCCCce------e-------EEeecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcE--EEEee---C
Q psy14440        524 RMARLWATDSYHP------L-------RLFVGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSH--VRLLT---G  584 (711)
Q Consensus       524 g~i~lwd~~~~~~------~-------~~~~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~--v~~~~---~  584 (711)
                      +.|++|+++....      +       .....+.....+++|+|+|+++++++ .++.|.+||+.+++.  +..+.   .
T Consensus       177 ~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~  256 (361)
T 3scy_A          177 DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV  256 (361)
T ss_dssp             TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS
T ss_pred             CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC
Confidence            9999998875431      1       22234456688999999999988877 589999999987754  22232   2


Q ss_pred             CCCCeEEEEEecCCCEEEEEeCC--CcEEEEECC--CCe--EEEEeeCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEeC
Q psy14440        585 HKAPVYALSFSVCGRFLASAGGD--GNVHMWDLS--NGH--LLTLLTGHTDVVRALCFSRDGNILASSG-QDCSVKLWDF  657 (711)
Q Consensus       585 h~~~I~~la~spdg~~Lasgs~D--g~I~iwDl~--sg~--~i~~l~~h~~~V~sl~fspdg~~Lasgs-~Dg~V~iWdl  657 (711)
                      +.....+++|+|||++|++++.+  +.|.+|++.  +++  .+..+.. ...+.+++|+|||++|++++ .++.|.+|++
T Consensus       257 ~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          257 NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence            34557899999999999776654  899999985  455  4555554 55678999999999888887 6789999877


Q ss_pred             CC
Q psy14440        658 AK  659 (711)
Q Consensus       658 ~~  659 (711)
                      ..
T Consensus       336 d~  337 (361)
T 3scy_A          336 DQ  337 (361)
T ss_dssp             CT
T ss_pred             EC
Confidence            53

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=2.8e-19  Score=190.65  Aligned_cols=233  Identities=15%  Similarity=0.150  Sum_probs=165.7

Q ss_pred             eecccCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCe--EEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCeEEEE
Q psy14440        456 LVGHEGPVRKLSFSPDRSLLLSCSQ---DNTIRLWSLLLWR--CLVVYKGHGHPVWDIKFSPHGYYFASAG-HDRMARLW  529 (711)
Q Consensus       456 l~~h~~~V~~l~fspdg~~L~s~s~---Dg~V~iwdl~t~~--~~~~~~~h~~~V~~v~~sp~g~~l~sgs-~Dg~i~lw  529 (711)
                      ...+...+..++|+|||+ |++++.   ++.|++|++.+++  .+..+..+...+..++|+|+|+++++++ .++++.+|
T Consensus        35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~  113 (347)
T 3hfq_A           35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM  113 (347)
T ss_dssp             EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence            344556778899999999 666554   6899999997766  3444455677888999999999888888 78999999


Q ss_pred             ECCC-Cc--eeEEeec---------CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-CCcEEE--EeeCC-CCCeEEEE
Q psy14440        530 ATDS-YH--PLRLFVG---------HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV-TGSHVR--LLTGH-KAPVYALS  593 (711)
Q Consensus       530 d~~~-~~--~~~~~~~---------h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~-~~~~v~--~~~~h-~~~I~~la  593 (711)
                      +++. +.  .+..+..         +...+.+++|+|+|++++++..++.|++||+. +++...  .+..+ ...+..++
T Consensus       114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~  193 (347)
T 3hfq_A          114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV  193 (347)
T ss_dssp             EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred             EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence            9963 22  2333322         12348899999999966666678899999998 554332  22322 33678899


Q ss_pred             EecCCCEEEEE-eCCCcEEEEECCC--CeE--EEEeeCCC------CCEEEEEEeCCCCEE-EEEeCCCcEEEEeCCCCC
Q psy14440        594 FSVCGRFLASA-GGDGNVHMWDLSN--GHL--LTLLTGHT------DVVRALCFSRDGNIL-ASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       594 ~spdg~~Lasg-s~Dg~I~iwDl~s--g~~--i~~l~~h~------~~V~sl~fspdg~~L-asgs~Dg~V~iWdl~~~~  661 (711)
                      |+|||++|+++ ..++.|.+|++..  ++.  +..+....      ..+..++|++||++| +++..++.|.+||+... 
T Consensus       194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~-  272 (347)
T 3hfq_A          194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD-  272 (347)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG-
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC-
Confidence            99999976664 5678999999874  553  33333322      358899999999977 55667899999998631 


Q ss_pred             CccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        662 DEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                                         .....+..+..+...+..++|++++.+|+
T Consensus       273 -------------------g~~~~~~~~~~~~~~~~~~~~spdg~~l~  301 (347)
T 3hfq_A          273 -------------------GHLTLIQQISTEGDFPRDFDLDPTEAFVV  301 (347)
T ss_dssp             -------------------GCEEEEEEEECSSSCCCEEEECTTSSEEE
T ss_pred             -------------------CcEEEeEEEecCCCCcCeEEECCCCCEEE
Confidence                               01123344555555677889999887654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=3.9e-20  Score=217.30  Aligned_cols=259  Identities=10%  Similarity=-0.006  Sum_probs=191.9

Q ss_pred             ceEEEEECCCCCEEEEEeCC---------CeEEEEeCCCCcee-------------eeccCccccccccccCCcEEEEEe
Q psy14440        389 QVTCAEISEDVSILAVGFSE---------SYIKLWSLVPQKLK-------------AMKSSDQLQDIEMECDDILVRIMD  446 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~d---------g~I~vWdl~~~~~~-------------~~~~~~~~~~l~~~~~d~~i~i~d  446 (711)
                      .|.+++|||||++||+++.+         +.|.+||+.+++..             ...+++++..++..+. +.|++|+
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~  140 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA  140 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence            49999999999999999875         78889999876542             2334566667776665 6899999


Q ss_pred             cCCCeeEEEeecccCCE------------------EEEEEcCCCCEEEEEeCCC--------------------------
Q psy14440        447 ERNAETTRTLVGHEGPV------------------RKLSFSPDRSLLLSCSQDN--------------------------  482 (711)
Q Consensus       447 ~~~~~~~~~l~~h~~~V------------------~~l~fspdg~~L~s~s~Dg--------------------------  482 (711)
                      ..+++.......+...+                  .+++|||||++|++++.|+                          
T Consensus       141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (723)
T 1xfd_A          141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (723)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence            98888776666554433                  7899999999999987653                          


Q ss_pred             --------eEEEEECCCCeEEEEEecC------CCCEEEEEEcCCCCEEEEEEC----CCeEEEEECCCCceeEEeec-C
Q psy14440        483 --------TIRLWSLLLWRCLVVYKGH------GHPVWDIKFSPHGYYFASAGH----DRMARLWATDSYHPLRLFVG-H  543 (711)
Q Consensus       483 --------~V~iwdl~t~~~~~~~~~h------~~~V~~v~~sp~g~~l~sgs~----Dg~i~lwd~~~~~~~~~~~~-h  543 (711)
                              +|++||+.+++....+..+      ...+.+++|+|+|+++++++.    +..|++||+.+++....+.. +
T Consensus       221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~  300 (723)
T 1xfd_A          221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES  300 (723)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred             CCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc
Confidence                    7999999988865666554      667999999999998877653    35799999999987776654 3


Q ss_pred             CCCe----eEEEEcCCCCEEEEE--EcCC------cEEEEE-CCCCc--EEEEeeCCCCCeEE-EEEecCCCEEEEEeCC
Q psy14440        544 YSDV----DCVQFHPNSNYVATG--SSDR------TIRLWD-CVTGS--HVRLLTGHKAPVYA-LSFSVCGRFLASAGGD  607 (711)
Q Consensus       544 ~~~V----~~v~~sp~~~~latg--s~Dg------~I~iwD-~~~~~--~v~~~~~h~~~I~~-la~spdg~~Lasgs~D  607 (711)
                      ...+    ..++|+|+|++|+..  ..++      .|.+|| ..++.  +.+.+..+...+.. ++|+|||++|+..+.+
T Consensus       301 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~  380 (723)
T 1xfd_A          301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE  380 (723)
T ss_dssp             SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred             CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcC
Confidence            3434    388999999977754  4566      577777 34444  15555544445554 6999999999866554


Q ss_pred             ---CcEEEEECCCC--eEEEEeeC---CCCCEEEEEEeCCCCEEEEEeC
Q psy14440        608 ---GNVHMWDLSNG--HLLTLLTG---HTDVVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       608 ---g~I~iwDl~sg--~~i~~l~~---h~~~V~sl~fspdg~~Lasgs~  648 (711)
                         +.++||++...  .....+..   |...+..++|++||++|+....
T Consensus       381 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          381 DLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             SCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             CCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence               78999988642  23334443   5677899999999998876543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=1e-20  Score=222.40  Aligned_cols=261  Identities=15%  Similarity=0.091  Sum_probs=194.4

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCcee--------------eeccCccccccccccC---------CcEEEEEecC
Q psy14440        392 CAEISEDVSILAVGFSESYIKLWSLVPQKLK--------------AMKSSDQLQDIEMECD---------DILVRIMDER  448 (711)
Q Consensus       392 ~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~--------------~~~~~~~~~~l~~~~~---------d~~i~i~d~~  448 (711)
                      +++|++||++++++ .|+.|++|++.+++..              ....++++..++.++.         ++.+++||..
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            67899999766654 6999999999876533              2345566777776655         6899999998


Q ss_pred             CCeeE--EEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCE-----------------EEE
Q psy14440        449 NAETT--RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY-KGHGHPV-----------------WDI  508 (711)
Q Consensus       449 ~~~~~--~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~-~~h~~~V-----------------~~v  508 (711)
                      +++..  ..+   .+.+.+++|||||+.|++++ |++|++|++.+++..... .++...|                 .++
T Consensus        99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            88762  222   35688999999999999986 789999999888765433 2232223                 489


Q ss_pred             EEcCCCCEEEEEECCC----------------------------------eEEEEECCCCcee---E-----EeecCCCC
Q psy14440        509 KFSPHGYYFASAGHDR----------------------------------MARLWATDSYHPL---R-----LFVGHYSD  546 (711)
Q Consensus       509 ~~sp~g~~l~sgs~Dg----------------------------------~i~lwd~~~~~~~---~-----~~~~h~~~  546 (711)
                      +|+|||++|++++.|.                                  .|++||+.+++..   .     .+.+|...
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            9999999999988652                                  7889999987643   2     23467888


Q ss_pred             eeEEEEcCCCCEEEEEEcCC----cEEEEE----CCCCcEEEEe----eCCCCCeE-----EEEEecCCCEEEE--EeCC
Q psy14440        547 VDCVQFHPNSNYVATGSSDR----TIRLWD----CVTGSHVRLL----TGHKAPVY-----ALSFSVCGRFLAS--AGGD  607 (711)
Q Consensus       547 V~~v~~sp~~~~latgs~Dg----~I~iwD----~~~~~~v~~~----~~h~~~I~-----~la~spdg~~Las--gs~D  607 (711)
                      +.+++|+||++++++....+    .|.+||    +.++++...+    .+|.+.+.     +++|+|||+.|+.  +..+
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  334 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD  334 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence            99999999987777754332    488999    8888776655    46777776     8899999996554  4455


Q ss_pred             C--cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEeCCC
Q psy14440        608 G--NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQD-----CSVKLWDFAK  659 (711)
Q Consensus       608 g--~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D-----g~V~iWdl~~  659 (711)
                      |  .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+     +.+++|.+..
T Consensus       335 g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          335 GYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             SCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             CceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            5  67788887776 45566566678888888 88877777665     8899998764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.85  E-value=2.6e-19  Score=188.52  Aligned_cols=222  Identities=9%  Similarity=0.046  Sum_probs=175.2

Q ss_pred             ccccccCCcEEEEEecCCCeeEEEeeccc-C-CEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeEEEEEecC-----CC
Q psy14440        432 DIEMECDDILVRIMDERNAETTRTLVGHE-G-PVRKLSFSPDRSLLL-SCSQDNTIRLWSLLLWRCLVVYKGH-----GH  503 (711)
Q Consensus       432 ~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-~-~V~~l~fspdg~~L~-s~s~Dg~V~iwdl~t~~~~~~~~~h-----~~  503 (711)
                      .++.+..++.|.+||..+++....+.... . .+.+++|+++|++++ +++.++.|.+||+.+++.+..+...     ..
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~   82 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence            35566778999999999998887776333 2 478999999998765 5556789999999999888777632     12


Q ss_pred             CEEEEEEcCCCCEEEEEE------------CCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEE
Q psy14440        504 PVWDIKFSPHGYYFASAG------------HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLW  571 (711)
Q Consensus       504 ~V~~v~~sp~g~~l~sgs------------~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iw  571 (711)
                      .+.+++|+++|+++++++            .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++  ++.|++|
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEE
Confidence            567899999999988886            579999999999888777764 4568899999999988888  6899999


Q ss_pred             ECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCC------------------------cEEEEECCCCeEE-EEeeC
Q psy14440        572 DCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG------------------------NVHMWDLSNGHLL-TLLTG  626 (711)
Q Consensus       572 D~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg------------------------~I~iwDl~sg~~i-~~l~~  626 (711)
                      |+.+++.+..+..+... ..++|+|+|++|+.++.++                        .|.+||+.+++.. ..+..
T Consensus       160 d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  238 (337)
T 1pby_B          160 DPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             ETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             ECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence            99999988877654411 1237899998776554332                        4689999998874 23445


Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        627 HTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       627 h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      +...+.+++|+++|++|+++  ++.|++||+.+
T Consensus       239 ~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~  269 (337)
T 1pby_B          239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred             CCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence            66778999999999999988  79999999865

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=2.7e-18  Score=184.19  Aligned_cols=229  Identities=15%  Similarity=0.154  Sum_probs=161.8

Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCC----CeEEEEECCC--CeE--EEEEecCCCCEEEEEEcCCCCEEEEEE-CCCeEEEE
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQD----NTIRLWSLLL--WRC--LVVYKGHGHPVWDIKFSPHGYYFASAG-HDRMARLW  529 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~D----g~V~iwdl~t--~~~--~~~~~~h~~~V~~v~~sp~g~~l~sgs-~Dg~i~lw  529 (711)
                      +...+..++|+|||++|++++.+    +.|.+|++..  ++.  +.....+......+++  +++++++++ .++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            66778889999999999999886    7999998865  443  3344445666777888  788777776 68899999


Q ss_pred             ECCCCceeEEe------ec--------CCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcE-------------EEE
Q psy14440        530 ATDSYHPLRLF------VG--------HYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSH-------------VRL  581 (711)
Q Consensus       530 d~~~~~~~~~~------~~--------h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~-------------v~~  581 (711)
                      ++.....+..+      .+        +...+.+++|+|+|++|++++ .++.|++|++.....             ...
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            99754332211      11        123358899999999776665 478999998875431             122


Q ss_pred             eeCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeE--EEEee---CCCCCEEEEEEeCCCCEEEEEeCC--CcEE
Q psy14440        582 LTGHKAPVYALSFSVCGRFLASAG-GDGNVHMWDLSNGHL--LTLLT---GHTDVVRALCFSRDGNILASSGQD--CSVK  653 (711)
Q Consensus       582 ~~~h~~~I~~la~spdg~~Lasgs-~Dg~I~iwDl~sg~~--i~~l~---~h~~~V~sl~fspdg~~Lasgs~D--g~V~  653 (711)
                      ...+...+..++|+|||++|++++ .++.|.+||+.+++.  +..+.   .+.....+++|++||++|++++.+  ++|.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence            233456688999999999888777 689999999988765  33333   334567899999999988776654  8999


Q ss_pred             EEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        654 LWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       654 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      +|++.....                   ....+..+.+ ...+.+++|++++.+|+
T Consensus       286 v~~~~~~~g-------------------~~~~~~~~~~-g~~~~~~~~spdg~~l~  321 (361)
T 3scy_A          286 IFKVDETNG-------------------TLTKVGYQLT-GIHPRNFIITPNGKYLL  321 (361)
T ss_dssp             EEEECTTTC-------------------CEEEEEEEEC-SSCCCEEEECTTSCEEE
T ss_pred             EEEEcCCCC-------------------cEEEeeEecC-CCCCceEEECCCCCEEE
Confidence            999863211                   1112233333 34566888888887654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=9e-19  Score=188.98  Aligned_cols=242  Identities=11%  Similarity=0.075  Sum_probs=173.9

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEeCC-CCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEE
Q psy14440        387 RQQVTCAEISEDVSILAVGFSESYIKLWSLV-PQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRK  465 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~  465 (711)
                      ...+..++|++||++|++++.+ .|.+|++. ++++..                             ......+ +.+.+
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-----------------------------~~~~~~~-g~~~~   87 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-----------------------------EASHPIG-GHPRA   87 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-----------------------------EEEEECC-SSGGG
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-----------------------------eeEeecC-CCCcc
Confidence            3467889999999999988887 89999974 222110                             0011111 22445


Q ss_pred             EEEcCCCCE--EEEEe-------------CCCeEEEEECC-CCeEEEEEe----cCCCCEEEEEEcCCCCEEEEEEC-CC
Q psy14440        466 LSFSPDRSL--LLSCS-------------QDNTIRLWSLL-LWRCLVVYK----GHGHPVWDIKFSPHGYYFASAGH-DR  524 (711)
Q Consensus       466 l~fspdg~~--L~s~s-------------~Dg~V~iwdl~-t~~~~~~~~----~h~~~V~~v~~sp~g~~l~sgs~-Dg  524 (711)
                      ++|+|||++  +++++             .+|++.+|++. .++....+.    .+...+.+++|+|+|+++++++. ++
T Consensus        88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~  167 (365)
T 1jof_A           88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTAN  167 (365)
T ss_dssp             GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCC
Confidence            889999994  45553             68999999997 465544333    25667999999999998887764 68


Q ss_pred             eEEEEECC-CCcee--EEee--cCCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECC--CCcEEE---Eee-------CCC
Q psy14440        525 MARLWATD-SYHPL--RLFV--GHYSDVDCVQFHPNSNYVATGSS-DRTIRLWDCV--TGSHVR---LLT-------GHK  586 (711)
Q Consensus       525 ~i~lwd~~-~~~~~--~~~~--~h~~~V~~v~~sp~~~~latgs~-Dg~I~iwD~~--~~~~v~---~~~-------~h~  586 (711)
                      .|++|+++ +++..  ..+.  .|...+..++|+|+|+++++++. +++|.+|++.  +|+...   .+.       +|.
T Consensus       168 ~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~  247 (365)
T 1jof_A          168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD  247 (365)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred             EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence            99999998 66543  2333  24567999999999999988875 6899999765  565421   222       122


Q ss_pred             C------CeEEEE-EecCCCEEEEEeCC-C-----cEEEEECC-CCeEEE---EeeCCCCCEEEEEEeC---CCCEEEEE
Q psy14440        587 A------PVYALS-FSVCGRFLASAGGD-G-----NVHMWDLS-NGHLLT---LLTGHTDVVRALCFSR---DGNILASS  646 (711)
Q Consensus       587 ~------~I~~la-~spdg~~Lasgs~D-g-----~I~iwDl~-sg~~i~---~l~~h~~~V~sl~fsp---dg~~Lasg  646 (711)
                      .      .+..++ |+|||++|++++.+ +     +|.+|++. +|+...   ....+...+..++|+|   ||++|+++
T Consensus       248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~  327 (365)
T 1jof_A          248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT  327 (365)
T ss_dssp             TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred             cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEE
Confidence            2      588999 99999998877643 2     89999996 676543   2334555567899999   89999999


Q ss_pred             eCC-CcEEEEeCCC
Q psy14440        647 GQD-CSVKLWDFAK  659 (711)
Q Consensus       647 s~D-g~V~iWdl~~  659 (711)
                      +.+ ++|+||++..
T Consensus       328 ~~~~~~v~v~~~~~  341 (365)
T 1jof_A          328 DDQEGWLEIYRWKD  341 (365)
T ss_dssp             CSSSCEEEEEEEET
T ss_pred             EcCCCeEEEEEEch
Confidence            865 8999999864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=5.9e-19  Score=190.64  Aligned_cols=248  Identities=13%  Similarity=0.010  Sum_probs=175.5

Q ss_pred             EEEEEecCCCceEE-----EEECCCCCEEEEEeC-CCe--EEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCC
Q psy14440        379 ACYTLLNARQQVTC-----AEISEDVSILAVGFS-ESY--IKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNA  450 (711)
Q Consensus       379 ~~~tl~~h~~~V~~-----l~fs~dg~~LatG~~-dg~--I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  450 (711)
                      ....+..|......     .+|||||++||+++. +|.  |.+|++.+                               +
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-------------------------------g   70 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNT-------------------------------Q   70 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTT-------------------------------C
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCC-------------------------------C
Confidence            34455666666665     889999999999887 663  55556543                               3


Q ss_pred             eeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEE--cCCCCEEEEEE-------
Q psy14440        451 ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKF--SPHGYYFASAG-------  521 (711)
Q Consensus       451 ~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~--sp~g~~l~sgs-------  521 (711)
                      +......+|...+.+++|+|||+.|+.++.++.|++||+.+++....+..+...+....|  ++++.+++...       
T Consensus        71 ~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~  150 (388)
T 3pe7_A           71 VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWV  150 (388)
T ss_dssp             EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred             ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccc
Confidence            333334455555557789999999999999999999999999988888777766654444  88998887432       


Q ss_pred             ---------------CCCeEEEEECCCCceeEEeecCCCCeeEEEEcC-CCCEEEEEEcC------CcEEEEECCCCcEE
Q psy14440        522 ---------------HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP-NSNYVATGSSD------RTIRLWDCVTGSHV  579 (711)
Q Consensus       522 ---------------~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~latgs~D------g~I~iwD~~~~~~v  579 (711)
                                     .++.|++||+.+++... +..+...+..++|+| +|+.|+.++.+      ..|.++|...+.. 
T Consensus       151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-  228 (388)
T 3pe7_A          151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-  228 (388)
T ss_dssp             CCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-
T ss_pred             cccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-
Confidence                           44789999999886544 445667789999999 99999887763      3788888776554 


Q ss_pred             EEeeCCC--CCeEEEEEecCCCEEEEEeC-CC----cEEEEECCCCeEE--EEeeCCCCC---EEEEEEeCCCCEEEEE-
Q psy14440        580 RLLTGHK--APVYALSFSVCGRFLASAGG-DG----NVHMWDLSNGHLL--TLLTGHTDV---VRALCFSRDGNILASS-  646 (711)
Q Consensus       580 ~~~~~h~--~~I~~la~spdg~~Lasgs~-Dg----~I~iwDl~sg~~i--~~l~~h~~~---V~sl~fspdg~~Lasg-  646 (711)
                      +.+..+.  ..+..++|||||+.|+..+. ++    .|++||+.+++..  ..+.++...   ...++|+|||+.|+.. 
T Consensus       229 ~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~  308 (388)
T 3pe7_A          229 RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDV  308 (388)
T ss_dssp             EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC----
T ss_pred             EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEe
Confidence            4444444  35788999999998765443 22    3999999998743  333331100   1123799999987754 


Q ss_pred             --------eCCCcEEEEeCCC
Q psy14440        647 --------GQDCSVKLWDFAK  659 (711)
Q Consensus       647 --------s~Dg~V~iWdl~~  659 (711)
                              +.++.|++||+..
T Consensus       309 ~~~~~~~~~~~~~i~~~d~~~  329 (388)
T 3pe7_A          309 QDDSGYKIENDPFLYVFNMKN  329 (388)
T ss_dssp             --------CCCCEEEEEETTT
T ss_pred             eeccccccCCCCEEEEEeccC
Confidence                    4566899999875

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.82  E-value=3.3e-18  Score=181.93  Aligned_cols=263  Identities=14%  Similarity=0.159  Sum_probs=201.9

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee-cccCCEEEE
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV-GHEGPVRKL  466 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~V~~l  466 (711)
                      +.+.+++++++|++++++..++.+++|+...........       .....++.|.+||..+++....+. ++-....++
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gi   96 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRG-------LGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGL   96 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGG-------GCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEE
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccc-------cccccCCcEEEEECCCCeEEeccCCCccCCceEE
Confidence            679999999999999999888776665554332211100       011145678999988888776654 455678999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEE---------ecCCCCEEEEEEcC-CCCEEEEEE-CCCeEEEEECCCC
Q psy14440        467 SFSPDRSLLLSCSQDNTIRLWSLLLWR-CLVVY---------KGHGHPVWDIKFSP-HGYYFASAG-HDRMARLWATDSY  534 (711)
Q Consensus       467 ~fspdg~~L~s~s~Dg~V~iwdl~t~~-~~~~~---------~~h~~~V~~v~~sp-~g~~l~sgs-~Dg~i~lwd~~~~  534 (711)
                      +++++|+++++.+.++.|++||..... .+..+         .++.....++++++ +|.++++.+ .++.|++|+ ..+
T Consensus        97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g  175 (329)
T 3fvz_A           97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG  175 (329)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence            999999988888889999999986442 44444         24455789999999 788888886 699999999 456


Q ss_pred             ceeEEeec----------CCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEee--CCCCCeEEEEEecCCCEE
Q psy14440        535 HPLRLFVG----------HYSDVDCVQFHPN-SNYVATGSSDRTIRLWDCVTGSHVRLLT--GHKAPVYALSFSVCGRFL  601 (711)
Q Consensus       535 ~~~~~~~~----------h~~~V~~v~~sp~-~~~latgs~Dg~I~iwD~~~~~~v~~~~--~h~~~I~~la~spdg~~L  601 (711)
                      ..+..+..          +......++++++ ++++++...++.|++||..+|+.+..+.  .+...+.+++|+| |..+
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~  254 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLF  254 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEE
T ss_pred             CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEE
Confidence            66666642          2234889999998 7777777788999999999899988884  4567789999999 4333


Q ss_pred             EEE-------eCCCcEEEEECCCCeEEEEee---CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        602 ASA-------GGDGNVHMWDLSNGHLLTLLT---GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       602 asg-------s~Dg~I~iwDl~sg~~i~~l~---~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ++.       ..+++|++||..+|+.+..+.   ++...+.+|+++++|+++++...+++|++|++..
T Consensus       255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            333       345589999999999998883   6777899999999998889888999999999864

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=7.8e-17  Score=166.87  Aligned_cols=243  Identities=8%  Similarity=0.162  Sum_probs=184.7

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEE
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRK  465 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~  465 (711)
                      +-....+++++++|+++++...++.|.+|+..+..+..+..                     ..     ...+|...+.+
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~---------------------~~-----~~~~~~~~p~~   81 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGE---------------------CG-----KRDSQLLYPNR   81 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECC---------------------BS-----SSTTCBSSEEE
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecc---------------------cC-----CCcccccCceE
Confidence            34578999999999999998889999999976432211100                     00     00134567889


Q ss_pred             EEEc-CCCCEEEEEeC-CCeEEEEECCCCeEEEEEec-CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEee-
Q psy14440        466 LSFS-PDRSLLLSCSQ-DNTIRLWSLLLWRCLVVYKG-HGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFV-  541 (711)
Q Consensus       466 l~fs-pdg~~L~s~s~-Dg~V~iwdl~t~~~~~~~~~-h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~-  541 (711)
                      ++++ ++++++++... ++.|++|| .+++.+..+.. +...+.+++++++|+++++.+.++.|++|+.+ ++.+..+. 
T Consensus        82 i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~  159 (286)
T 1q7f_A           82 VAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGC  159 (286)
T ss_dssp             EEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC
T ss_pred             EEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCC
Confidence            9994 66766655533 88999999 56777766643 44678999999999988888888999999965 45555554 


Q ss_pred             -cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC--CCCeEEEEEecCCCEEEEEeCCC-cEEEEECCC
Q psy14440        542 -GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH--KAPVYALSFSVCGRFLASAGGDG-NVHMWDLSN  617 (711)
Q Consensus       542 -~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h--~~~I~~la~spdg~~Lasgs~Dg-~I~iwDl~s  617 (711)
                       ++...+.+++++++++++++.+.++.|++||. +++.+..+..+  ...+..++++++|+++++...++ .|.+||. +
T Consensus       160 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~  237 (286)
T 1q7f_A          160 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-D  237 (286)
T ss_dssp             TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-T
T ss_pred             CCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-C
Confidence             45567899999999998888778999999997 56666676543  36789999999999888888776 9999995 6


Q ss_pred             CeEEEEeeCCC--CCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        618 GHLLTLLTGHT--DVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       618 g~~i~~l~~h~--~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ++.+..+..+.  ..+.+++++++|+++++ +.|++|++|++..
T Consensus       238 g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          238 GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            77777776554  34789999999987777 6799999999865

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=2.5e-18  Score=197.16  Aligned_cols=234  Identities=14%  Similarity=0.070  Sum_probs=176.0

Q ss_pred             EecCC-CceEEEEECCCCCEEEEEeC---CCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        383 LLNAR-QQVTCAEISEDVSILAVGFS---ESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       383 l~~h~-~~V~~l~fs~dg~~LatG~~---dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      +..|. ..+.+++|||| +++++++.   +...+||.+...                            ..+... .+..
T Consensus        59 lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~----------------------------~~g~~~-~l~~  108 (582)
T 3o4h_A           59 LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS----------------------------RPGEEQ-RLEA  108 (582)
T ss_dssp             CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT----------------------------STTCCE-ECTT
T ss_pred             eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc----------------------------CCCccc-cccC
Confidence            44455 58899999999 77777765   444566554210                            011111 2222


Q ss_pred             ccCCEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC----CeEEEEECCC
Q psy14440        459 HEGPVRKLSFSPDRSL-LLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD----RMARLWATDS  533 (711)
Q Consensus       459 h~~~V~~l~fspdg~~-L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D----g~i~lwd~~~  533 (711)
                      +. .+...+|++||+. +++++.++.+.+||+.+++.......+.   ++++|+|+|+++++++.+    +.|++||+.+
T Consensus       109 ~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~  184 (582)
T 3o4h_A          109 VK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS  184 (582)
T ss_dssp             SC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTT
T ss_pred             CC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC
Confidence            22 2335678888763 3333344445699999988776665443   789999999999988877    7899999998


Q ss_pred             CceeEEeecCCCCeeEEEEcCCCCEEEEEEcCC--cEEEEECCCCcEEEEeeCCCCCeEEEE--------EecCCCEEEE
Q psy14440        534 YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR--TIRLWDCVTGSHVRLLTGHKAPVYALS--------FSVCGRFLAS  603 (711)
Q Consensus       534 ~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg--~I~iwD~~~~~~v~~~~~h~~~I~~la--------~spdg~~Las  603 (711)
                      ++.. .+.+|...+..++|+|||++|+++..++  .|++||+.+++.. .+.+|...+..++        |+|||.++++
T Consensus       185 g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~  262 (582)
T 3o4h_A          185 GGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVV  262 (582)
T ss_dssp             CCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEE
T ss_pred             CCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEE
Confidence            7754 5678888899999999999999888888  8999999999887 7778887777777        9999999999


Q ss_pred             EeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCc---EEEEeCC
Q psy14440        604 AGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCS---VKLWDFA  658 (711)
Q Consensus       604 gs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~---V~iWdl~  658 (711)
                      ++.||++++|++  |+.+.   .+.+.|.+++|+ +|+++++++.+.+   |.+||..
T Consensus       263 ~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          263 ARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             EEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence            999999999999  77654   345778999999 9999999888754   6677665

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.79  E-value=4e-18  Score=201.53  Aligned_cols=264  Identities=14%  Similarity=0.054  Sum_probs=184.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeee----------------ccCccccccccccCC---------cEEE
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAM----------------KSSDQLQDIEMECDD---------ILVR  443 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~----------------~~~~~~~~l~~~~~d---------~~i~  443 (711)
                      ...+++|++||++++++  ||.|++|++.+++...+                ..++++..+++...+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            45688999999999997  89999999987664322                225666667666654         5677


Q ss_pred             EEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCE-----------------
Q psy14440        444 IMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY-KGHGHPV-----------------  505 (711)
Q Consensus       444 i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~-~~h~~~V-----------------  505 (711)
                      +||..+++.. .+..|.+.+...+|||||+.|+.++ |+.|++|++.+++..... .++...+                 
T Consensus        96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~  173 (740)
T 4a5s_A           96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (740)
T ss_dssp             EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence            9999888754 5777888999999999999999885 689999999887755432 2222222                 


Q ss_pred             EEEEEcCCCCEEEEEECCC------------------------------------eEEEEECCC---C---ceeEEee--
Q psy14440        506 WDIKFSPHGYYFASAGHDR------------------------------------MARLWATDS---Y---HPLRLFV--  541 (711)
Q Consensus       506 ~~v~~sp~g~~l~sgs~Dg------------------------------------~i~lwd~~~---~---~~~~~~~--  541 (711)
                      ..+.|||||++|+.++.|.                                    ++++||+.+   +   +......  
T Consensus       174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~  253 (740)
T 4a5s_A          174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA  253 (740)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred             cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence            2489999999999886322                                    588899988   7   3333322  


Q ss_pred             ---cCCCCeeEEEEcCCCCEEEEEEc----CCcEEEEECCCCc----EEE--Ee--eCCCCCeE-----EEEEecCCCEE
Q psy14440        542 ---GHYSDVDCVQFHPNSNYVATGSS----DRTIRLWDCVTGS----HVR--LL--TGHKAPVY-----ALSFSVCGRFL  601 (711)
Q Consensus       542 ---~h~~~V~~v~~sp~~~~latgs~----Dg~I~iwD~~~~~----~v~--~~--~~h~~~I~-----~la~spdg~~L  601 (711)
                         +|...+..++|+|||+.++....    +..|++||+.+|+    +..  .+  .+|.+.|.     ..+|+|||+.|
T Consensus       254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l  333 (740)
T 4a5s_A          254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF  333 (740)
T ss_dssp             HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred             cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence               37778999999999997776543    2379999999987    322  22  45665554     78999999987


Q ss_pred             E-EEeC-C--CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEE-EeC----CCcEEEEeCC
Q psy14440        602 A-SAGG-D--GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILAS-SGQ----DCSVKLWDFA  658 (711)
Q Consensus       602 a-sgs~-D--g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Las-gs~----Dg~V~iWdl~  658 (711)
                      + ..+. +  ..|++||+.+++......+ ...|..+.+ .|++.|+. ++.    .+...||.+.
T Consensus       334 ~~~~s~~~G~~~l~~~~~~~~~~~~lT~g-~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~  397 (740)
T 4a5s_A          334 YKIISNEEGYRHICYFQIDKKDCTFITKG-TWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQ  397 (740)
T ss_dssp             EEEEECTTSCEEEEEEETTCSSCEESCCS-SSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             EEEEEcCCCceEEEEEECCCCceEecccC-CEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEE
Confidence            7 6653 3  3688999887765543333 445655542 34655544 443    2445666553

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.79  E-value=8.5e-19  Score=206.08  Aligned_cols=270  Identities=9%  Similarity=-0.018  Sum_probs=196.1

Q ss_pred             ceEEEEECCCCCEEEEEeC---------CCeEEEEeCCCCce---ee-------eccCccccccccccCCcEEEEEecCC
Q psy14440        389 QVTCAEISEDVSILAVGFS---------ESYIKLWSLVPQKL---KA-------MKSSDQLQDIEMECDDILVRIMDERN  449 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~---------dg~I~vWdl~~~~~---~~-------~~~~~~~~~l~~~~~d~~i~i~d~~~  449 (711)
                      .|.+++|||||++||+++.         ++.|++||+.+++.   ..       ..+++++..++... ++.|++|+..+
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~  139 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG  139 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCC
Confidence            3899999999999999876         78999999988765   32       34566777777764 67999999988


Q ss_pred             CeeEEEe-ecccCCE-----------------EEEEEcCCCCEEEEEeCCC-----------------------------
Q psy14440        450 AETTRTL-VGHEGPV-----------------RKLSFSPDRSLLLSCSQDN-----------------------------  482 (711)
Q Consensus       450 ~~~~~~l-~~h~~~V-----------------~~l~fspdg~~L~s~s~Dg-----------------------------  482 (711)
                      ++..... .++...|                 .+++|||||++|++++.|.                             
T Consensus       140 g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~  219 (719)
T 1z68_A          140 DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA  219 (719)
T ss_dssp             SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS
T ss_pred             CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC
Confidence            7765432 2333333                 4899999999999988652                             


Q ss_pred             -----eEEEEECCCCeEE---E-----EEecCCCCEEEEEEcCCCCEEEEEECC----CeEEEEE----CCCCceeEEe-
Q psy14440        483 -----TIRLWSLLLWRCL---V-----VYKGHGHPVWDIKFSPHGYYFASAGHD----RMARLWA----TDSYHPLRLF-  540 (711)
Q Consensus       483 -----~V~iwdl~t~~~~---~-----~~~~h~~~V~~v~~sp~g~~l~sgs~D----g~i~lwd----~~~~~~~~~~-  540 (711)
                           +|++||+.+++..   .     .+.+|...+.+++|+|+++++++....    ..|.+||    ..+++....+ 
T Consensus       220 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~  299 (719)
T 1z68_A          220 KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE  299 (719)
T ss_dssp             CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE
T ss_pred             CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe
Confidence                 7899999887642   1     123578889999999998777664432    2488899    7777666555 


Q ss_pred             ---ecCCCCee-----EEEEcCCCCEEEE--EEcCC--cEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC-
Q psy14440        541 ---VGHYSDVD-----CVQFHPNSNYVAT--GSSDR--TIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD-  607 (711)
Q Consensus       541 ---~~h~~~V~-----~v~~sp~~~~lat--gs~Dg--~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D-  607 (711)
                         .+|...+.     ++.|+|+|+.|+.  +..+|  .|.+||+.+++ .+.+..+...+..+.++ +|+.|+..+.+ 
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~  377 (719)
T 1z68_A          300 HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEF  377 (719)
T ss_dssp             EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCG
T ss_pred             cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecC
Confidence               46777777     8999999996654  33444  57778887776 55666667778888888 88887776654 


Q ss_pred             ----CcEEEEECCC--Ce-EEEEee----CCCCCEEEEEEeCCCCEEEE-EeCC--CcEEEEeCCCCC
Q psy14440        608 ----GNVHMWDLSN--GH-LLTLLT----GHTDVVRALCFSRDGNILAS-SGQD--CSVKLWDFAKLS  661 (711)
Q Consensus       608 ----g~I~iwDl~s--g~-~i~~l~----~h~~~V~sl~fspdg~~Las-gs~D--g~V~iWdl~~~~  661 (711)
                          +.+++|.+..  +. ....+.    +|...+..++|+++|++++. ++.+  ..+.+||+.+..
T Consensus       378 ~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          378 EEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             GGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred             CCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence                7888887653  42 123333    25667889999999987664 4433  468899886543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.78  E-value=6e-17  Score=174.61  Aligned_cols=199  Identities=7%  Similarity=0.103  Sum_probs=147.2

Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEEecC-CCCEEEEEEcCCCCE--EEEEE-------------
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL-LWRCLVVYKGH-GHPVWDIKFSPHGYY--FASAG-------------  521 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~-t~~~~~~~~~h-~~~V~~v~~sp~g~~--l~sgs-------------  521 (711)
                      +...+..++|+|||++|++++.+ .|.+|++. +++........ .+.+.+++|+|+|++  +++++             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            33467889999999999999988 99999997 77765443311 123556899999984  44543             


Q ss_pred             CCCeEEEEECC-CCceeEEee----cCCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECC-CCcEE--EEee--CCCCCeE
Q psy14440        522 HDRMARLWATD-SYHPLRLFV----GHYSDVDCVQFHPNSNYVATGSS-DRTIRLWDCV-TGSHV--RLLT--GHKAPVY  590 (711)
Q Consensus       522 ~Dg~i~lwd~~-~~~~~~~~~----~h~~~V~~v~~sp~~~~latgs~-Dg~I~iwD~~-~~~~v--~~~~--~h~~~I~  590 (711)
                      .++++.+|+++ .++....+.    .+...+.+++|+|+|++|++++. ++.|++||+. +++..  ..+.  .|...+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            68999999997 455544333    25567999999999999887764 6799999998 77653  2333  2456799


Q ss_pred             EEEEecCCCEEEEEeC-CCcEEEEECC--CCeEE---EEee-------CCCC------CEEEEE-EeCCCCEEEEEeCC-
Q psy14440        591 ALSFSVCGRFLASAGG-DGNVHMWDLS--NGHLL---TLLT-------GHTD------VVRALC-FSRDGNILASSGQD-  649 (711)
Q Consensus       591 ~la~spdg~~Lasgs~-Dg~I~iwDl~--sg~~i---~~l~-------~h~~------~V~sl~-fspdg~~Lasgs~D-  649 (711)
                      .++|+|||++|++++. ++.|.+|++.  +|+..   ..+.       +|..      .+..++ |+|||++|++++.+ 
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence            9999999999988775 6899999765  56643   2222       1222      588999 99999988876643 


Q ss_pred             C-----cEEEEeCC
Q psy14440        650 C-----SVKLWDFA  658 (711)
Q Consensus       650 g-----~V~iWdl~  658 (711)
                      +     +|++|++.
T Consensus       277 ~~~~~~~i~v~~~~  290 (365)
T 1jof_A          277 KFELQGYIAGFKLR  290 (365)
T ss_dssp             STTSCCEEEEEEEC
T ss_pred             CCCCCCeEEEEEEC
Confidence            2     89999986

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.77  E-value=2.8e-17  Score=173.93  Aligned_cols=189  Identities=12%  Similarity=0.044  Sum_probs=149.9

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC-CCEEEEEEcCCCCEEE-EEECCCeEEEEECCCCceeEEeec
Q psy14440        465 KLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHG-HPVWDIKFSPHGYYFA-SAGHDRMARLWATDSYHPLRLFVG  542 (711)
Q Consensus       465 ~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~-~~V~~v~~sp~g~~l~-sgs~Dg~i~lwd~~~~~~~~~~~~  542 (711)
                      ++++++++.++++++.+++|++||+.+++.+..+..+. ..+..++|+++|++++ +++.++.|.+||+.+++.+..+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678888899999999999999999999988887543 2577899999998655 555789999999999888776653


Q ss_pred             CC------CCeeEEEEcCCCCEEEEEEcC------------CcEEEEECCCCcE---EEEeeCCCCCeEEEEEecCCCEE
Q psy14440        543 HY------SDVDCVQFHPNSNYVATGSSD------------RTIRLWDCVTGSH---VRLLTGHKAPVYALSFSVCGRFL  601 (711)
Q Consensus       543 h~------~~V~~v~~sp~~~~latgs~D------------g~I~iwD~~~~~~---v~~~~~h~~~I~~la~spdg~~L  601 (711)
                      +.      ..+.+++|+|+|++|++++.+            +.|.+||+.+++.   +..+.. ...+.+++|+++|+ +
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-L  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-E
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-E
Confidence            32      237899999999999998865            8999999988543   344443 34688999999999 6


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeeCCC-----------------------------------------------------
Q psy14440        602 ASAGGDGNVHMWDLSNGHLLTLLTGHT-----------------------------------------------------  628 (711)
Q Consensus       602 asgs~Dg~I~iwDl~sg~~i~~l~~h~-----------------------------------------------------  628 (711)
                      ++++.  .|.+||+.+++.+..+..+.                                                     
T Consensus       162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence            66544  49999999998877765331                                                     


Q ss_pred             ---------------CCEEEEEEeC-CCCEEEEEeCCCcEEEEeCCC
Q psy14440        629 ---------------DVVRALCFSR-DGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       629 ---------------~~V~sl~fsp-dg~~Lasgs~Dg~V~iWdl~~  659 (711)
                                     ..+.+++|++ +|++|+++  ++.|++||+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~  284 (349)
T 1jmx_B          240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ  284 (349)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT
T ss_pred             ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc
Confidence                           1345677889 99999888  88999999875

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=1.4e-17  Score=193.75  Aligned_cols=242  Identities=14%  Similarity=0.071  Sum_probs=177.1

Q ss_pred             EecCCCceEEEEECCCCCEEEEE--eCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        383 LLNARQQVTCAEISEDVSILAVG--FSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~LatG--~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      +.+|...|.+++|++++-+++.+  +.++...||.....                               ...+.+..|.
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-------------------------------~~~~~l~~~~   67 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD-------------------------------GAEESALPAP   67 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT-------------------------------SCEEESSCTT
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC-------------------------------CCcceeCCCC
Confidence            34577889999999887777777  56788999985211                               1122333333


Q ss_pred             CCEE---------EEEEc--CCCCE-EEEEeC-CCeEEEEECC--C-CeEEEEEec-----CCCCEEEEEEcCCCCEEEE
Q psy14440        461 GPVR---------KLSFS--PDRSL-LLSCSQ-DNTIRLWSLL--L-WRCLVVYKG-----HGHPVWDIKFSPHGYYFAS  519 (711)
Q Consensus       461 ~~V~---------~l~fs--pdg~~-L~s~s~-Dg~V~iwdl~--t-~~~~~~~~~-----h~~~V~~v~~sp~g~~l~s  519 (711)
                      ..+.         ...|+  |||+. |+.++. +..|.+|++.  . +. ...+..     |...+.+++|+|+|+.|++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~  146 (662)
T 3azo_A           68 WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWC  146 (662)
T ss_dssp             CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEE
T ss_pred             ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEE
Confidence            3333         45555  99998 776654 5667777765  2 33 444544     6678899999999999999


Q ss_pred             EECC----------CeEEEEECCC------CceeEEee-cCCCCeeEEEEcCCCCEEEEEEcCC--------cEEEEECC
Q psy14440        520 AGHD----------RMARLWATDS------YHPLRLFV-GHYSDVDCVQFHPNSNYVATGSSDR--------TIRLWDCV  574 (711)
Q Consensus       520 gs~D----------g~i~lwd~~~------~~~~~~~~-~h~~~V~~v~~sp~~~~latgs~Dg--------~I~iwD~~  574 (711)
                      ++.+          ..|++||+.+      +.. +.+. .+...+..++|+|||++|+.++.++        .|++||+.
T Consensus       147 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~  225 (662)
T 3azo_A          147 MAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT  225 (662)
T ss_dssp             EEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred             EEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC
Confidence            9877          5899999988      544 4454 5567788899999999999888653        79999998


Q ss_pred             -CC---cEEEEeeCCCCCeEEEEEecCCCEEEEEeCCC--cEEEEECCCCeEEEEeeCCCCC--------EEEEEEeCCC
Q psy14440        575 -TG---SHVRLLTGHKAPVYALSFSVCGRFLASAGGDG--NVHMWDLSNGHLLTLLTGHTDV--------VRALCFSRDG  640 (711)
Q Consensus       575 -~~---~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg--~I~iwDl~sg~~i~~l~~h~~~--------V~sl~fspdg  640 (711)
                       ++   +......+|...+..++|+|||+++++++.+|  .|.+||+.+++......++...        +.+++|++++
T Consensus       226 ~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~  305 (662)
T 3azo_A          226 EDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG  305 (662)
T ss_dssp             TTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred             CCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence             57   55555556678999999999999888888888  6777777777765544433322        5678999999


Q ss_pred             CEEEEEeCCCcEEEEeCC
Q psy14440        641 NILASSGQDCSVKLWDFA  658 (711)
Q Consensus       641 ~~Lasgs~Dg~V~iWdl~  658 (711)
                      +++++++. ++++||.+.
T Consensus       306 ~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          306 LIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             CEEEEEBS-SSCEEEEEE
T ss_pred             EEEEEEEc-CccEEEEEE
Confidence            99999998 999999543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=2.5e-17  Score=177.71  Aligned_cols=264  Identities=11%  Similarity=-0.038  Sum_probs=186.2

Q ss_pred             eEEEEECCCCCEEEEEeCC---CeEEEEeCCCCceeee-----------ccCccccccccccCCcEEEEEecCCCeeEEE
Q psy14440        390 VTCAEISEDVSILAVGFSE---SYIKLWSLVPQKLKAM-----------KSSDQLQDIEMECDDILVRIMDERNAETTRT  455 (711)
Q Consensus       390 V~~l~fs~dg~~LatG~~d---g~I~vWdl~~~~~~~~-----------~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  455 (711)
                      +.+++|||||++||.+...   ..|.+|++.+++...+           .++++...++....++.+++|+..+++....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            7788999999998877553   4688889877654332           2345566677777777899999888876666


Q ss_pred             eecccCCEEE-------------------EEEcCCCCEEEEE-----eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEc
Q psy14440        456 LVGHEGPVRK-------------------LSFSPDRSLLLSC-----SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFS  511 (711)
Q Consensus       456 l~~h~~~V~~-------------------l~fspdg~~L~s~-----s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~s  511 (711)
                      ...+.+....                   +.|+|+++.++.+     ..+..|++||+.+++..... .+...+..+.|+
T Consensus       118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s  196 (396)
T 3c5m_A          118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR  196 (396)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred             EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence            6555543333                   3567777776654     35678999999988766555 467789999999


Q ss_pred             C-CCCEEEEEECC------CeEEEEECCCCceeEEeecC-CCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCCCcE
Q psy14440        512 P-HGYYFASAGHD------RMARLWATDSYHPLRLFVGH-YSDVDCVQFHPNSNYVATGSSD-----RTIRLWDCVTGSH  578 (711)
Q Consensus       512 p-~g~~l~sgs~D------g~i~lwd~~~~~~~~~~~~h-~~~V~~v~~sp~~~~latgs~D-----g~I~iwD~~~~~~  578 (711)
                      | ++..|+.++.+      ..|.+|+++.+......... ...+..++|+|+|++|+.++.+     +.|++||+.+++.
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (396)
T 3c5m_A          197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN  276 (396)
T ss_dssp             TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred             CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence            9 78877776643      36888898766543333321 2357889999999988877654     4499999998876


Q ss_pred             EEEeeCCCCCeEEEEEec-CCCEEEEEe----------------CCCcEEEEECCCCeEEEEeeCCCC-----------C
Q psy14440        579 VRLLTGHKAPVYALSFSV-CGRFLASAG----------------GDGNVHMWDLSNGHLLTLLTGHTD-----------V  630 (711)
Q Consensus       579 v~~~~~h~~~I~~la~sp-dg~~Lasgs----------------~Dg~I~iwDl~sg~~i~~l~~h~~-----------~  630 (711)
                      ....... + .. ++|++ ||++|++++                .++.|++||+.+++.. .+..+..           .
T Consensus       277 ~~l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~  352 (396)
T 3c5m_A          277 EEVMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQIT  352 (396)
T ss_dssp             EEEEECC-S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTT
T ss_pred             EEeeeCC-C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCC
Confidence            5443322 2 33 89999 999888765                3478999999888753 3444443           2


Q ss_pred             EEEEEEeCCCCEEEEEeC-CCcEEEEeCC
Q psy14440        631 VRALCFSRDGNILASSGQ-DCSVKLWDFA  658 (711)
Q Consensus       631 V~sl~fspdg~~Lasgs~-Dg~V~iWdl~  658 (711)
                      +..++|++||+.|+.++. ++...||.+.
T Consensus       353 ~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          353 HPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCceEccCCCeEEEEecCCCCceEEEEE
Confidence            567899999998887764 5666666553

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.73  E-value=8.7e-16  Score=160.02  Aligned_cols=231  Identities=15%  Similarity=0.091  Sum_probs=175.6

Q ss_pred             EEEecCCCceEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        381 YTLLNARQQVTCAEISEDVS-ILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~-~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      ..+..+.....+++|+++|+ +++++..++.|.+|+..+.                                 ...+..+
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------------------------------~~~~~~~   67 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------------------------------LSPEMHP   67 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---------------------------------EEEEESS
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---------------------------------eEEEECC
Confidence            34556667788999999998 8888888999999987532                                 2233446


Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC----CCCEEEEEEcCCCCEEEEEEC-------------
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH----GHPVWDIKFSPHGYYFASAGH-------------  522 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h----~~~V~~v~~sp~g~~l~sgs~-------------  522 (711)
                      .+.+.+++|+++|+++++...++.|.+||..+++........    ...+.+++++++|+++++.+.             
T Consensus        68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~  147 (296)
T 3e5z_A           68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE  147 (296)
T ss_dssp             CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC
T ss_pred             CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc
Confidence            677899999999998877777789999999887765443321    234678999999998887321             


Q ss_pred             ----CCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-CCcE---EEEeeCCCCCeEEEEE
Q psy14440        523 ----DRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV-TGSH---VRLLTGHKAPVYALSF  594 (711)
Q Consensus       523 ----Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~-~~~~---v~~~~~h~~~I~~la~  594 (711)
                          .+.|..++.. + .+..+..+......++|+|+++.+++.+.++.|.+||+. +++.   .+.+..+.+.+.++++
T Consensus       148 ~~~~~~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~  225 (296)
T 3e5z_A          148 MELPGRWVFRLAPD-G-TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRV  225 (296)
T ss_dssp             CCSSSCEEEEECTT-S-CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEE
T ss_pred             ccCCCcEEEEECCC-C-CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEE
Confidence                2455555554 3 345555677778999999999999777778999999987 5554   3444445566788999


Q ss_pred             ecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEE-eCCCCEEEEEeCCC
Q psy14440        595 SVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCF-SRDGNILASSGQDC  650 (711)
Q Consensus       595 spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~f-spdg~~Lasgs~Dg  650 (711)
                      +++|+++++.  ++.|.+||.. |+.+..+..+.. +.+++| +++++.|++++.++
T Consensus       226 d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          226 DAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             BTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             CCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence            9999876665  7899999986 888888887777 899999 58899999888764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.73  E-value=6.7e-16  Score=164.02  Aligned_cols=252  Identities=9%  Similarity=0.080  Sum_probs=178.6

Q ss_pred             CceEEEEECCCCCEEEEEe---------CCCeEEEEeCCCCceee------eccCccccccccccC-----CcEEEEEec
Q psy14440        388 QQVTCAEISEDVSILAVGF---------SESYIKLWSLVPQKLKA------MKSSDQLQDIEMECD-----DILVRIMDE  447 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~---------~dg~I~vWdl~~~~~~~------~~~~~~~~~l~~~~~-----d~~i~i~d~  447 (711)
                      ..+...++  ||+.+|...         .++.|.+|++.+++...      ..+++++..++....     ...|.+|+.
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~   92 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFIENATMPRISPDGKKIAFMRANEEKKVSEIWVADL   92 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEEESCEEEEECTTSSEEEEEEEETTTTEEEEEEEET
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEcccCCCeEECCCCCEEEEEEeccCCCcceEEEEEC
Confidence            34666777  888777642         25678889988765432      345566666665543     234777787


Q ss_pred             CCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCC---------------------------CeEEEEECCCCeEEEEEec
Q psy14440        448 RNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQD---------------------------NTIRLWSLLLWRCLVVYKG  500 (711)
Q Consensus       448 ~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~D---------------------------g~V~iwdl~t~~~~~~~~~  500 (711)
                      .+++.......+ . +.+++|+|||+.|+.++.+                           ..|.+||+.+++.+..+..
T Consensus        93 ~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~  170 (347)
T 2gop_A           93 ETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK  170 (347)
T ss_dssp             TTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC
Confidence            777655544433 4 9999999999998888642                           5699999998887455544


Q ss_pred             CCCCEEEEEEcCCCCEEEEEECCC-------eEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcC--------
Q psy14440        501 HGHPVWDIKFSPHGYYFASAGHDR-------MARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD--------  565 (711)
Q Consensus       501 h~~~V~~v~~sp~g~~l~sgs~Dg-------~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D--------  565 (711)
                       . .+..+.|+|+| ++++++.++       ...+|.+++++ .+.+..+ ..+..+  +|+|++|+.++.+        
T Consensus       171 -~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~  243 (347)
T 2gop_A          171 -P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEH  243 (347)
T ss_dssp             -E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSS
T ss_pred             -C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCcccc
Confidence             3 78899999999 777776542       44555444444 3444444 445444  9999999888754        


Q ss_pred             CcEEEEECCCCcEEEEeeCCCCCeEE-EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEE
Q psy14440        566 RTIRLWDCVTGSHVRLLTGHKAPVYA-LSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILA  644 (711)
Q Consensus       566 g~I~iwD~~~~~~v~~~~~h~~~I~~-la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~La  644 (711)
                      ..|.+||  +++......+|...+.. ++|+ || ++++++.++.++|| +.+++....+ .+.+.|.+++|++  .+++
T Consensus       244 ~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~  315 (347)
T 2gop_A          244 NKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVY  315 (347)
T ss_dssp             CEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEE
T ss_pred             ceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEE
Confidence            3688888  66655555566778886 9999 88 89999999999999 8777664444 4577899999998  6788


Q ss_pred             EEeCCCcE-EEEeCC
Q psy14440        645 SSGQDCSV-KLWDFA  658 (711)
Q Consensus       645 sgs~Dg~V-~iWdl~  658 (711)
                      +++.+++. +||.+.
T Consensus       316 ~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          316 LKETATRLRELFTWD  330 (347)
T ss_dssp             EEECSSSCCEEEEES
T ss_pred             EEcCCCChHHheEeC
Confidence            88777765 788775

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.73  E-value=7.2e-16  Score=166.35  Aligned_cols=240  Identities=10%  Similarity=0.048  Sum_probs=164.8

Q ss_pred             CcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeEEEEEecC------C
Q psy14440        439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQ----------DNTIRLWSLLLWRCLVVYKGH------G  502 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~----------Dg~V~iwdl~t~~~~~~~~~h------~  502 (711)
                      ++.+++||..+++....+..+.++  .++|+|||++|++++.          +++|.+||..+++.+..+...      .
T Consensus        30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g  107 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL  107 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred             cCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence            345555555566666666666665  8999999999999863          678999999999988887643      2


Q ss_pred             CCEEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceeEE-eecCCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCC-Cc
Q psy14440        503 HPVWDIKFSPHGYYFASAGH--DRMARLWATDSYHPLRL-FVGHYSDVDCVQFHPNS-NYVATGSSDRTIRLWDCVT-GS  577 (711)
Q Consensus       503 ~~V~~v~~sp~g~~l~sgs~--Dg~i~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~-~~latgs~Dg~I~iwD~~~-~~  577 (711)
                      .....++++|+|++++++..  +++|.+||+.+++.+.. +.. .. ...+.+.|++ ..+++.+.||.+.+|++.. ++
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~  185 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK  185 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence            44667999999999998874  68999999999887776 432 11 1123344433 3444455555555555432 22


Q ss_pred             EE-------------------------------------------------EEeeC------CC----CCeEEEEEecCC
Q psy14440        578 HV-------------------------------------------------RLLTG------HK----APVYALSFSVCG  598 (711)
Q Consensus       578 ~v-------------------------------------------------~~~~~------h~----~~I~~la~spdg  598 (711)
                      ..                                                 ..+..      +.    .....++|++++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg  265 (361)
T 2oiz_A          186 VASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS  265 (361)
T ss_dssp             EEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTT
T ss_pred             EeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCC
Confidence            11                                                 01000      00    001126889998


Q ss_pred             CEEEEEeC-----------CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcc
Q psy14440        599 RFLASAGG-----------DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTE  667 (711)
Q Consensus       599 ~~Lasgs~-----------Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~  667 (711)
                      +.++++..           .+.|.+||+.+++.+..+..+.  +.+++|++||++|++++. ++|.|||..+..      
T Consensus       266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~------  336 (361)
T 2oiz_A          266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE------  336 (361)
T ss_dssp             TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSS------
T ss_pred             CeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCc------
Confidence            88877643           3489999999999999999877  899999999999998886 999999987531      


Q ss_pred             ccccccccccccccccceeeecccCCcceEEEEEccCCe
Q psy14440        668 EVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNI  706 (711)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~  706 (711)
                                     ...+.++.........+.|+|+|.
T Consensus       337 ---------------l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          337 ---------------PKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ---------------CEEEEEETTSCSSEEEEEECCCSC
T ss_pred             ---------------ceeeEEeccCCCCcEEEEecCCCC
Confidence                           133444444455567888888874

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.73  E-value=2.3e-16  Score=170.17  Aligned_cols=215  Identities=12%  Similarity=0.031  Sum_probs=166.5

Q ss_pred             EecCCCeeEEEeecccCCEEE-----EEEcCCCCEEEEEeC-CC--eEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCE
Q psy14440        445 MDERNAETTRTLVGHEGPVRK-----LSFSPDRSLLLSCSQ-DN--TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYY  516 (711)
Q Consensus       445 ~d~~~~~~~~~l~~h~~~V~~-----l~fspdg~~L~s~s~-Dg--~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~  516 (711)
                      ++..++.....+..|.+.+..     .+|||||++|+.++. +|  .|.+||+.+++......++...+.++.|+|+|+.
T Consensus        15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~   94 (388)
T 3pe7_A           15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA   94 (388)
T ss_dssp             ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred             ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence            456677788888888877776     899999999998887 66  4888999999888877777766667889999999


Q ss_pred             EEEEECCCeEEEEECCCCceeEEeecCCCCeeEEE--EcCCCCEEEEEE----------------------cCCcEEEEE
Q psy14440        517 FASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQ--FHPNSNYVATGS----------------------SDRTIRLWD  572 (711)
Q Consensus       517 l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~--~sp~~~~latgs----------------------~Dg~I~iwD  572 (711)
                      |++++.++.+++||+.+++....+..+...+....  +++++.+++...                      .++.|.+||
T Consensus        95 l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  174 (388)
T 3pe7_A           95 LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD  174 (388)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence            99999999999999999988777776666554444  488999887532                      346799999


Q ss_pred             CCCCcEEEEeeCCCCCeEEEEEec-CCCEEEEEeCC------CcEEEEECCCCeEEEEeeCCC--CCEEEEEEeCCCCEE
Q psy14440        573 CVTGSHVRLLTGHKAPVYALSFSV-CGRFLASAGGD------GNVHMWDLSNGHLLTLLTGHT--DVVRALCFSRDGNIL  643 (711)
Q Consensus       573 ~~~~~~v~~~~~h~~~I~~la~sp-dg~~Lasgs~D------g~I~iwDl~sg~~i~~l~~h~--~~V~sl~fspdg~~L  643 (711)
                      +.+++... +..+...+..++|+| ||+.|+.++.+      ..|.++|+..++. ..+..+.  ..+..++|+|||+.|
T Consensus       175 ~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l  252 (388)
T 3pe7_A          175 LKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSAL  252 (388)
T ss_dssp             TTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCE
T ss_pred             CCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEE
Confidence            99987544 445677899999999 99999877653      3788888876554 3344343  357889999999977


Q ss_pred             EEEeC-CC----cEEEEeCCCCC
Q psy14440        644 ASSGQ-DC----SVKLWDFAKLS  661 (711)
Q Consensus       644 asgs~-Dg----~V~iWdl~~~~  661 (711)
                      +..+. ++    .|++||+....
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~g~  275 (388)
T 3pe7_A          253 VYVSYLKGSPDRFIYSADPETLE  275 (388)
T ss_dssp             EEEEEETTCCCEEEEEECTTTCC
T ss_pred             EEEecCCCCCcceEEEEecCCCc
Confidence            65443 22    39999997643

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.73  E-value=8e-16  Score=180.91  Aligned_cols=243  Identities=11%  Similarity=0.031  Sum_probs=179.2

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSES-----YIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg-----~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      |...+.+++|||||++||.+..++     .|++||+.+++                               .......+ 
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~-------------------------------~~~~~~~~-  170 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK-------------------------------ELPDVLER-  170 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE-------------------------------EEEEEEEE-
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-------------------------------CCcccccC-
Confidence            334688999999999999876643     67777775443                               22211111 


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCe----------------EEEEECCCCeE--EEEEec--CCCCEEEEEEcCCCCEEEEE
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNT----------------IRLWSLLLWRC--LVVYKG--HGHPVWDIKFSPHGYYFASA  520 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~----------------V~iwdl~t~~~--~~~~~~--h~~~V~~v~~sp~g~~l~sg  520 (711)
                      ..+.+++|+|||+.|+.++.++.                |++|++.++..  ...+..  |...+.++.|+|+|++|+.+
T Consensus       171 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~  250 (710)
T 2xdw_A          171 VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (710)
T ss_dssp             ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEE
Confidence            22567999999999999988766                99999987652  233333  45568899999999999887


Q ss_pred             EC-----CCeEEEEECCC------Cc-eeEEeecCCCCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCCc--EEEEe
Q psy14440        521 GH-----DRMARLWATDS------YH-PLRLFVGHYSDVDCVQFHPNSNYVATGSSD----RTIRLWDCVTGS--HVRLL  582 (711)
Q Consensus       521 s~-----Dg~i~lwd~~~------~~-~~~~~~~h~~~V~~v~~sp~~~~latgs~D----g~I~iwD~~~~~--~v~~~  582 (711)
                      +.     +..|++||+.+      +. ..+.+..+...+.. .|+++|+.|+..+.+    +.|.+||+.++.  ..+.+
T Consensus       251 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l  329 (710)
T 2xdw_A          251 IREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL  329 (710)
T ss_dssp             EECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE
T ss_pred             EEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec
Confidence            75     67899999986      43 45666666666655 488899988877653    359999998874  23455


Q ss_pred             eCCCC--CeEEEEEecCCCEEEEEeCCC--cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEE-e---CCCcEEE
Q psy14440        583 TGHKA--PVYALSFSVCGRFLASAGGDG--NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASS-G---QDCSVKL  654 (711)
Q Consensus       583 ~~h~~--~I~~la~spdg~~Lasgs~Dg--~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasg-s---~Dg~V~i  654 (711)
                      ..|..  .+..++|++++.+++++..|+  .|.+||+.+|+.+..+..+.+.|.++++++++..|+.. +   ..++|.+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~  409 (710)
T 2xdw_A          330 VPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYH  409 (710)
T ss_dssp             ECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEE
T ss_pred             cCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEE
Confidence            55544  688899998888888888887  46677887888888888888889999999998766533 2   3478999


Q ss_pred             EeCCCCC
Q psy14440        655 WDFAKLS  661 (711)
Q Consensus       655 Wdl~~~~  661 (711)
                      ||+.+..
T Consensus       410 ~d~~tg~  416 (710)
T 2xdw_A          410 CDLTKEE  416 (710)
T ss_dssp             EETTSSS
T ss_pred             EECCCCc
Confidence            9997644

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.72  E-value=5.1e-16  Score=180.44  Aligned_cols=198  Identities=13%  Similarity=0.059  Sum_probs=148.3

Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCC----------CeEEEEECCC------CeEEEEEe-cCCCCEEEEEEcCCCCEEEEEE
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQD----------NTIRLWSLLL------WRCLVVYK-GHGHPVWDIKFSPHGYYFASAG  521 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~D----------g~V~iwdl~t------~~~~~~~~-~h~~~V~~v~~sp~g~~l~sgs  521 (711)
                      |...+.+++|||||+.|++++.|          .+|++||+.+      ++.. .+. .+...+..++|+|+|++|+.++
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~  206 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLA  206 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEE
Confidence            56778999999999999998877          5899999987      5543 344 5566788899999999999887


Q ss_pred             CC--------CeEEEEECC-CC---ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCC--cEEEEECCCCcEEEEeeCCCC
Q psy14440        522 HD--------RMARLWATD-SY---HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR--TIRLWDCVTGSHVRLLTGHKA  587 (711)
Q Consensus       522 ~D--------g~i~lwd~~-~~---~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg--~I~iwD~~~~~~v~~~~~h~~  587 (711)
                      .+        ..|++||++ ++   +......+|...+..++|+|||+++++++.++  .|.+||+.+++......++..
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  286 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEE  286 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSB
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccc
Confidence            55        379999999 56   44555556678899999999999888887788  677777767776554443332


Q ss_pred             C--------eEEEEEecCCCEEEEEeCCCcEEEE--ECCCCeEEEEeeCCCCCEEEE-EEeCCCCEEEEEeCCCcEEEE-
Q psy14440        588 P--------VYALSFSVCGRFLASAGGDGNVHMW--DLSNGHLLTLLTGHTDVVRAL-CFSRDGNILASSGQDCSVKLW-  655 (711)
Q Consensus       588 ~--------I~~la~spdg~~Lasgs~Dg~I~iw--Dl~sg~~i~~l~~h~~~V~sl-~fspdg~~Lasgs~Dg~V~iW-  655 (711)
                      .        +.+++|+++++++++++. +.++||  |+.+++ +..+..|.+.+..+ +++.+.-++++++.+....|| 
T Consensus       287 ~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          287 FAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVE  364 (662)
T ss_dssp             SSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred             ccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEE
Confidence            2        567899999999999998 999999  666665 67788888888877 555443345555666544444 


Q ss_pred             -eCCC
Q psy14440        656 -DFAK  659 (711)
Q Consensus       656 -dl~~  659 (711)
                       |+.+
T Consensus       365 ~d~~~  369 (662)
T 3azo_A          365 LDTVT  369 (662)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence             5544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.71  E-value=3.1e-15  Score=158.87  Aligned_cols=225  Identities=12%  Similarity=0.149  Sum_probs=173.1

Q ss_pred             cCCEEEEEEcCCCCEEEEEeCC------------------------CeEEEEECCCCeEEEEEe-cCCCCEEEEEEcCCC
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQD------------------------NTIRLWSLLLWRCLVVYK-GHGHPVWDIKFSPHG  514 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~D------------------------g~V~iwdl~t~~~~~~~~-~h~~~V~~v~~sp~g  514 (711)
                      -+.+.+++++++|+++++.+.+                        ++|.+||..+++.+..+. ++......++++++|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999988888777                        479999999888877665 345678999999999


Q ss_pred             CEEEEEECCCeEEEEECCCCc-eeEEe---------ecCCCCeeEEEEcC-CCCEEEEEE-cCCcEEEEECCCCcEEEEe
Q psy14440        515 YYFASAGHDRMARLWATDSYH-PLRLF---------VGHYSDVDCVQFHP-NSNYVATGS-SDRTIRLWDCVTGSHVRLL  582 (711)
Q Consensus       515 ~~l~sgs~Dg~i~lwd~~~~~-~~~~~---------~~h~~~V~~v~~sp-~~~~latgs-~Dg~I~iwD~~~~~~v~~~  582 (711)
                      +++++.+.++.|++|+.+... .+..+         .++......+++++ +++++++.+ .++.|++|| .+|+.+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888889999999987542 45555         34555789999999 788888886 699999999 677777776


Q ss_pred             eCC----------CCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEee--CCCCCEEEEEEeCCCCEEEE----
Q psy14440        583 TGH----------KAPVYALSFSVC-GRFLASAGGDGNVHMWDLSNGHLLTLLT--GHTDVVRALCFSRDGNILAS----  645 (711)
Q Consensus       583 ~~h----------~~~I~~la~spd-g~~Lasgs~Dg~I~iwDl~sg~~i~~l~--~h~~~V~sl~fspdg~~Las----  645 (711)
                      ...          -.....++++++ |+++++...+++|++||..+|+.+..+.  .+...+.+++|+| +..+++    
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~  260 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP  260 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence            432          234899999998 7777777788999999999899998884  4567789999999 433333    


Q ss_pred             ---EeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeec---ccCCcceEEEEEccCCeeee
Q psy14440        646 ---SGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSY---KTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       646 ---gs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~t~~~pV~~v~Fs~~n~lla  709 (711)
                         .+.+++|++||+.+..                       .+..+   ..+...+.+|+|+++|.+++
T Consensus       261 ~v~~~~~~~v~~~~~~~g~-----------------------~~~~~~~~~~~~~~p~~ia~~~dG~lyv  307 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSGE-----------------------IIDVFKPVRKHFDMPHDIVASEDGTVYI  307 (329)
T ss_dssp             CTTCSCCCCEEEEETTTCC-----------------------EEEEECCSSSCCSSEEEEEECTTSEEEE
T ss_pred             EeccCCCcEEEEEEcCCCe-----------------------EEEEEcCCCCccCCeeEEEECCCCCEEE
Confidence               3345589999986422                       22222   24455678999999986554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.70  E-value=2e-16  Score=187.03  Aligned_cols=233  Identities=11%  Similarity=0.104  Sum_probs=171.0

Q ss_pred             eccCccccccccccCCcEEEEEecCCCeeEEEeecccCC-----EEEEEEcCCCCEEEEEeCC---------CeEEEEEC
Q psy14440        424 MKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGP-----VRKLSFSPDRSLLLSCSQD---------NTIRLWSL  489 (711)
Q Consensus       424 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~-----V~~l~fspdg~~L~s~s~D---------g~V~iwdl  489 (711)
                      +.+..+...++.+  ++.|++||..+++....+.+|...     ...++|||||++|+.++.+         +.+.+||+
T Consensus        22 ~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~   99 (740)
T 4a5s_A           22 LRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (740)
T ss_dssp             EEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             cEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence            3444455445443  789999999999988888887643     2447899999999998876         55679999


Q ss_pred             CCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEee-cCCC-----------------CeeEEE
Q psy14440        490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFV-GHYS-----------------DVDCVQ  551 (711)
Q Consensus       490 ~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~-~h~~-----------------~V~~v~  551 (711)
                      .+++... +..|...+..++|||+|+.||.++ |+.|++|+..++...+... ++..                 ....+.
T Consensus       100 ~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~  177 (740)
T 4a5s_A          100 NKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (740)
T ss_dssp             TTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             CCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceE
Confidence            9988653 556778899999999999999885 7899999998877655322 2222                 223589


Q ss_pred             EcCCCCEEEEEEcCC------------------------------------cEEEEECCC---C---cEEEEee-----C
Q psy14440        552 FHPNSNYVATGSSDR------------------------------------TIRLWDCVT---G---SHVRLLT-----G  584 (711)
Q Consensus       552 ~sp~~~~latgs~Dg------------------------------------~I~iwD~~~---~---~~v~~~~-----~  584 (711)
                      |+|||++||.++.|.                                    +|++||+.+   +   +......     +
T Consensus       178 wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~  257 (740)
T 4a5s_A          178 WSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLI  257 (740)
T ss_dssp             ECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHT
T ss_pred             ECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCC
Confidence            999999999886432                                    488899988   7   4333322     3


Q ss_pred             CCCCeEEEEEecCCCEEEEEeC----CCcEEEEECCCCe----EEE--Ee--eCCCCCEE-----EEEEeCCCCEEE-EE
Q psy14440        585 HKAPVYALSFSVCGRFLASAGG----DGNVHMWDLSNGH----LLT--LL--TGHTDVVR-----ALCFSRDGNILA-SS  646 (711)
Q Consensus       585 h~~~I~~la~spdg~~Lasgs~----Dg~I~iwDl~sg~----~i~--~l--~~h~~~V~-----sl~fspdg~~La-sg  646 (711)
                      |...+..++|||||++++....    +..|++||+.+|+    +..  .+  .+|.+.|.     +.+|+|||+.|+ ..
T Consensus       258 ~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~  337 (740)
T 4a5s_A          258 GDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKII  337 (740)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEE
T ss_pred             CCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEE
Confidence            7788999999999997765532    3479999999887    221  11  44655544     789999999877 66


Q ss_pred             eC-CC--cEEEEeCCCC
Q psy14440        647 GQ-DC--SVKLWDFAKL  660 (711)
Q Consensus       647 s~-Dg--~V~iWdl~~~  660 (711)
                      +. +|  .|++||+...
T Consensus       338 s~~~G~~~l~~~~~~~~  354 (740)
T 4a5s_A          338 SNEEGYRHICYFQIDKK  354 (740)
T ss_dssp             ECTTSCEEEEEEETTCS
T ss_pred             EcCCCceEEEEEECCCC
Confidence            53 44  5888887653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.70  E-value=2.4e-14  Score=151.37  Aligned_cols=238  Identities=12%  Similarity=0.081  Sum_probs=173.7

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      ....+..+...+.+++|+++|++++++..++.|.+|+..+.++.                               .....
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~-------------------------------~~~~~   84 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK-------------------------------RPFVS   84 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-------------------------------EEEEC
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE-------------------------------EEeeC
Confidence            45567777788999999999998888888999999988654322                               11123


Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeEEEEEe--cCCCCEEEEEEcCCCCEEEEEEC------CCeE
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQD----NTIRLWSLLLWRCLVVYK--GHGHPVWDIKFSPHGYYFASAGH------DRMA  526 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~D----g~V~iwdl~t~~~~~~~~--~h~~~V~~v~~sp~g~~l~sgs~------Dg~i  526 (711)
                      +...+.+++|+++|++++++..+    +.|.+||..++.....+.  .+...+.+++++++|+++++...      .+.|
T Consensus        85 ~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l  164 (333)
T 2dg1_A           85 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGV  164 (333)
T ss_dssp             SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEE
T ss_pred             CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceE
Confidence            45679999999999888777666    689999998776554443  24567999999999987776654      3556


Q ss_pred             EEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCC-CcEEEE--------eeCCCCCeEEEEEec
Q psy14440        527 RLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATG-SSDRTIRLWDCVT-GSHVRL--------LTGHKAPVYALSFSV  596 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latg-s~Dg~I~iwD~~~-~~~v~~--------~~~h~~~I~~la~sp  596 (711)
                      ..|+.++++... +..+...+.+++|++++++|+++ +.++.|.+||+.+ +..+..        +.++ ..+..+++++
T Consensus       165 ~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~  242 (333)
T 2dg1_A          165 YYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDS  242 (333)
T ss_dssp             EEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBT
T ss_pred             EEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECC
Confidence            666665544433 33334568899999999876555 4578999999964 332221        1222 4678899999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCC------CEEEEEEeCCCCEEEEEeCCC
Q psy14440        597 CGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTD------VVRALCFSRDGNILASSGQDC  650 (711)
Q Consensus       597 dg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~------~V~sl~fspdg~~Lasgs~Dg  650 (711)
                      +|+++++...++.|.+||. +++.+..+..+..      .+.+++|++|++.|+.++.++
T Consensus       243 ~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          243 DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            9998888878899999998 5777777765433      688999999987776666553

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.70  E-value=2.9e-15  Score=153.09  Aligned_cols=239  Identities=8%  Similarity=-0.022  Sum_probs=174.9

Q ss_pred             ceEEEEECCCCCEEE-EEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEE
Q psy14440        389 QVTCAEISEDVSILA-VGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLS  467 (711)
Q Consensus       389 ~V~~l~fs~dg~~La-tG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~  467 (711)
                      ...+++++++|++++ +...++.|.+|+..+.....                               ....+...+.+++
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-------------------------------~~~~~~~~p~~i~   73 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-------------------------------LPFNGLYQPQGLA   73 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-------------------------------CCCCSCCSCCCEE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-------------------------------EeeCCcCCcceeE
Confidence            778999999999777 54677889999864322110                               0012234577899


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCe
Q psy14440        468 FSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDV  547 (711)
Q Consensus       468 fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V  547 (711)
                      ++++|+.+++.. ++.|.+||................+.+++++++|+.+++...++.|.+|+..+.............+
T Consensus        74 ~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p  152 (270)
T 1rwi_B           74 VDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDP  152 (270)
T ss_dssp             ECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSC
T ss_pred             ECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCc
Confidence            999998666555 8899999987654432222233678999999999988887788999999776554433333344568


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCC
Q psy14440        548 DCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGH  627 (711)
Q Consensus       548 ~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h  627 (711)
                      .+++++++++.+++...++.|.+||...+........+...+.+++++++|.++++...++.|.+||............+
T Consensus       153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~  232 (270)
T 1rwi_B          153 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG  232 (270)
T ss_dssp             CCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCS
T ss_pred             eeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCC
Confidence            89999999997777777889999998877654443344467899999999987777777889999998765443322233


Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        628 TDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       628 ~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ...+.+++++++|+++++.+.+++|++|++..
T Consensus       233 ~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          233 LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             CSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             CCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence            45789999999999989988999999999865

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.70  E-value=2e-14  Score=151.92  Aligned_cols=205  Identities=13%  Similarity=0.068  Sum_probs=153.7

Q ss_pred             eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC----CeEE
Q psy14440        452 TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD----RMAR  527 (711)
Q Consensus       452 ~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D----g~i~  527 (711)
                      ....+..+...+.+++|+++|++++++..++.|.+||..+++.......+...+.+++|+++|++++++..+    +.|.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~  115 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF  115 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence            344556677778999999999987888889999999998887766554567789999999999888877766    6899


Q ss_pred             EEECCCCceeEEee--cCCCCeeEEEEcCCCCEEEEEEc------CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCC
Q psy14440        528 LWATDSYHPLRLFV--GHYSDVDCVQFHPNSNYVATGSS------DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGR  599 (711)
Q Consensus       528 lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~latgs~------Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~  599 (711)
                      +||.+++.....+.  .+...+.+++++++|+++++...      .+.|..||..+++.... ..+...+..++|+++|+
T Consensus       116 ~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          116 AATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALSTDEK  194 (333)
T ss_dssp             EECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECTTSS
T ss_pred             EEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECCCCC
Confidence            99998876553433  24567899999999988776653      35566777665554333 33345578999999998


Q ss_pred             EEEEE-eCCCcEEEEECCC-CeEEE--------EeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        600 FLASA-GGDGNVHMWDLSN-GHLLT--------LLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       600 ~Lasg-s~Dg~I~iwDl~s-g~~i~--------~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      +|+.+ +.++.|.+||+.+ +..+.        .+.++ ..+..++++++|+++++...++.|.+||..
T Consensus       195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            66554 5678999999963 33221        11222 467899999999988888888999999874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.69  E-value=5.3e-15  Score=157.07  Aligned_cols=201  Identities=12%  Similarity=0.133  Sum_probs=150.4

Q ss_pred             CcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCC---C--eEEEEECCCCeEEEEEecCCCCEEEEEEcCC
Q psy14440        439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQD---N--TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH  513 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~D---g--~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~  513 (711)
                      ++.+.+|+..+++.. .+    ..+.+++|||||++|+.++.+   +  .|.+|++.+++.......+.  +.+++|+|+
T Consensus        42 ~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspd  114 (347)
T 2gop_A           42 ENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNED  114 (347)
T ss_dssp             EEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTT
T ss_pred             cceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCC
Confidence            567888998877643 33    568899999999999887754   3  48888998888766665443  999999999


Q ss_pred             CCEEEEEECC---------------------------CeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCC
Q psy14440        514 GYYFASAGHD---------------------------RMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR  566 (711)
Q Consensus       514 g~~l~sgs~D---------------------------g~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg  566 (711)
                      |+.|+.++.+                           ..|++||+.+++.++.+.. . .+..++|+|+| ++++++.++
T Consensus       115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~  191 (347)
T 2gop_A          115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHRE  191 (347)
T ss_dssp             SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCC
T ss_pred             CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEeccc
Confidence            9998888742                           5789999998876455544 3 78999999999 777776542


Q ss_pred             -------cEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC--------CcEEEEECCCCeEEEEeeCCCCCE
Q psy14440        567 -------TIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD--------GNVHMWDLSNGHLLTLLTGHTDVV  631 (711)
Q Consensus       567 -------~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D--------g~I~iwDl~sg~~i~~l~~h~~~V  631 (711)
                             ...||.+.+++. +.+..+ ..+.++  +|||++|+.++.+        +.|.+||  +++......+|...+
T Consensus       192 ~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~  265 (347)
T 2gop_A          192 IIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGV  265 (347)
T ss_dssp             SSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEE
T ss_pred             ccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCccc
Confidence                   344544445554 444444 555554  9999998877754        3688888  666655556667788


Q ss_pred             EE-EEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        632 RA-LCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       632 ~s-l~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      .. +.|+ || ++++++.++.++|| +.
T Consensus       266 ~~~~~~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          266 GQAKIKD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             EEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred             CCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence            86 9999 88 99999999999999 86

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.68  E-value=2.6e-14  Score=147.78  Aligned_cols=197  Identities=10%  Similarity=0.148  Sum_probs=155.7

Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe------cCCCCEEEEEE-cCCCCEEEEEEC-CCeEEEE
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK------GHGHPVWDIKF-SPHGYYFASAGH-DRMARLW  529 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~------~h~~~V~~v~~-sp~g~~l~sgs~-Dg~i~lw  529 (711)
                      ++-..+.+++++++++++++.+.++.|.+||.. ++.+..+.      ++...+.++++ .++++++++... ++.|++|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            455678999999999988888889999999987 56666654      23457899999 467766666543 8999999


Q ss_pred             ECCCCceeEEee-cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee--CCCCCeEEEEEecCCCEEEEEeC
Q psy14440        530 ATDSYHPLRLFV-GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT--GHKAPVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       530 d~~~~~~~~~~~-~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~--~h~~~I~~la~spdg~~Lasgs~  606 (711)
                      | .+++.+..+. .+...+.+++++++++++++.+.++.|.+||. .++.+..+.  ++...+.+++++++|+++++...
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            9 4566666654 34567899999999998888778899999995 466666664  34567899999999998888888


Q ss_pred             CCcEEEEECCCCeEEEEeeCC--CCCEEEEEEeCCCCEEEEEeCCC-cEEEEeCC
Q psy14440        607 DGNVHMWDLSNGHLLTLLTGH--TDVVRALCFSRDGNILASSGQDC-SVKLWDFA  658 (711)
Q Consensus       607 Dg~I~iwDl~sg~~i~~l~~h--~~~V~sl~fspdg~~Lasgs~Dg-~V~iWdl~  658 (711)
                      ++.|++||. +++.+..+..+  ...+.+++++++|+++++...++ .|++||..
T Consensus       184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence            899999997 56677777544  36789999999999999888886 99999853

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.68  E-value=6.5e-16  Score=166.59  Aligned_cols=232  Identities=8%  Similarity=-0.039  Sum_probs=163.2

Q ss_pred             eccCcccccccccc---CCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec
Q psy14440        424 MKSSDQLQDIEMEC---DDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG  500 (711)
Q Consensus       424 ~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~  500 (711)
                      ...++++..++...   ....+.+|+..+++......++......+.|+|||++|+.++.++.|++||+.+++....+..
T Consensus        41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~  120 (396)
T 3c5m_A           41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTV  120 (396)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEec
Confidence            34455555555443   234788889888775444333333333488999999999999999999999998887777665


Q ss_pred             CCCCEEE-------------------EEEcCCCCEEEEE-----ECCCeEEEEECCCCceeEEeecCCCCeeEEEEcC-C
Q psy14440        501 HGHPVWD-------------------IKFSPHGYYFASA-----GHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP-N  555 (711)
Q Consensus       501 h~~~V~~-------------------v~~sp~g~~l~sg-----s~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~  555 (711)
                      +.....+                   +.|+|+++.++.+     ..+..|++||+.+++..... .+...+..+.|+| +
T Consensus       121 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~d  199 (396)
T 3c5m_A          121 DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFD  199 (396)
T ss_dssp             CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTE
T ss_pred             ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCC
Confidence            5543333                   3567777766554     35678999999988765554 5667899999999 7


Q ss_pred             CCEEEEEEcC------CcEEEEECCCCcEEEEeeCC--CCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeEEE
Q psy14440        556 SNYVATGSSD------RTIRLWDCVTGSHVRLLTGH--KAPVYALSFSVCGRFLASAGGD-----GNVHMWDLSNGHLLT  622 (711)
Q Consensus       556 ~~~latgs~D------g~I~iwD~~~~~~v~~~~~h--~~~I~~la~spdg~~Lasgs~D-----g~I~iwDl~sg~~i~  622 (711)
                      +..|+.++.+      ..|.+||+.+++.. .+..+  ...+..++|+|||++|+.++.+     +.|++||+.+++...
T Consensus       200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~  278 (396)
T 3c5m_A          200 DSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE  278 (396)
T ss_dssp             EEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE
T ss_pred             CCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE
Confidence            8877776653      36889998766543 33333  2358889999999988777543     449999999887644


Q ss_pred             EeeCCCCCEEEEEEeC-CCCEEEEEe----------------CCCcEEEEeCCCC
Q psy14440        623 LLTGHTDVVRALCFSR-DGNILASSG----------------QDCSVKLWDFAKL  660 (711)
Q Consensus       623 ~l~~h~~~V~sl~fsp-dg~~Lasgs----------------~Dg~V~iWdl~~~  660 (711)
                      ..... + .. ++|++ ||++|++++                .++.|++||+...
T Consensus       279 l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          279 VMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK  330 (396)
T ss_dssp             EEECC-S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred             eeeCC-C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence            33222 2 33 89999 999888765                3478999998754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.68  E-value=3.5e-13  Score=139.17  Aligned_cols=272  Identities=10%  Similarity=0.009  Sum_probs=191.3

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeec------------cCccccccccccCCcEEEEEecC
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMK------------SSDQLQDIEMECDDILVRIMDER  448 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~------------~~~~~~~l~~~~~d~~i~i~d~~  448 (711)
                      +.+..+...+.+++++++|++.++...++.|.+|+.. ..+....            ...+...++....++.+..|+..
T Consensus         8 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A            8 LNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             EECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            4455566789999999999988877778899999987 4443322            11222222333346778888865


Q ss_pred             CCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-EecCCCCEEEEEEcCCCCEEEEEECCCeEE
Q psy14440        449 NAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV-YKGHGHPVWDIKFSPHGYYFASAGHDRMAR  527 (711)
Q Consensus       449 ~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~-~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~  527 (711)
                      .......+..+...+.+++++++|+.+++...++.|.+||. +++.... ...+...+.++++.++|+.+++...++.|.
T Consensus        87 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  165 (299)
T 2z2n_A           87 GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG  165 (299)
T ss_dssp             SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence            22212222234567899999999988887777889999998 5544332 233456789999999998887777788999


Q ss_pred             EEECCCCceeEE-eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-eeCCCCCeEEEEEecCCCEEEEEe
Q psy14440        528 LWATDSYHPLRL-FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRL-LTGHKAPVYALSFSVCGRFLASAG  605 (711)
Q Consensus       528 lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~-~~~h~~~I~~la~spdg~~Lasgs  605 (711)
                      .||. +++.... .......+.+++++++++.+++...++.|.+||. +++.... ...+...+.+++++++|+++++..
T Consensus       166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~  243 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW  243 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred             EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc
Confidence            9999 5554433 2334567889999999987776666889999998 6664332 233556789999999999776666


Q ss_pred             CCCcEEEEECCCCeEEEE-eeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        606 GDGNVHMWDLSNGHLLTL-LTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       606 ~Dg~I~iwDl~sg~~i~~-l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      .++.|.+||. +++.... +..+...+.++++ ++|+++++.+ .+.|..++..+
T Consensus       244 ~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~  295 (299)
T 2z2n_A          244 GANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK  295 (299)
T ss_dssp             TTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred             CCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence            7889999998 5654322 2345567999999 8888777655 56777777654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.67  E-value=3.1e-14  Score=153.50  Aligned_cols=244  Identities=13%  Similarity=0.123  Sum_probs=178.5

Q ss_pred             EEEECCCCCEEEEEeC----------CCeEEEEeCCCCceee-----------------eccCcccccccccc-C-CcEE
Q psy14440        392 CAEISEDVSILAVGFS----------ESYIKLWSLVPQKLKA-----------------MKSSDQLQDIEMEC-D-DILV  442 (711)
Q Consensus       392 ~l~fs~dg~~LatG~~----------dg~I~vWdl~~~~~~~-----------------~~~~~~~~~l~~~~-~-d~~i  442 (711)
                      .++||+||++|+++..          ++.|.+||..+.+...                 +..+++...+.+.. . ++.|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            8999999999998863          6789999997755321                 22334455555544 2 6889


Q ss_pred             EEEecCCCeeEEE-eecccCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-CeEEEEE------ecCCCCEEEEEEcCC
Q psy14440        443 RIMDERNAETTRT-LVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLLL-WRCLVVY------KGHGHPVWDIKFSPH  513 (711)
Q Consensus       443 ~i~d~~~~~~~~~-l~~h~~~V~~l~fspdg-~~L~s~s~Dg~V~iwdl~t-~~~~~~~------~~h~~~V~~v~~sp~  513 (711)
                      .+||..+++.+.. +. +.+ ...+.+.|++ ..+++.+.||.+.+|++.. ++.....      ..+..++ .+.++++
T Consensus       134 ~v~d~~~~~~~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~  210 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALD  210 (361)
T ss_dssp             EEEETTTTEEEEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEEC
T ss_pred             EEEECCCCcEEEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEeccc
Confidence            9999999988777 43 322 3446677766 6788889999999999865 5544222      1222222 2334567


Q ss_pred             CCEEEEEECCCeEEEEECCCCce--eEEeec------CC----CCeeEEEEcCCCCEEEEEEc-----------CCcEEE
Q psy14440        514 GYYFASAGHDRMARLWATDSYHP--LRLFVG------HY----SDVDCVQFHPNSNYVATGSS-----------DRTIRL  570 (711)
Q Consensus       514 g~~l~sgs~Dg~i~lwd~~~~~~--~~~~~~------h~----~~V~~v~~sp~~~~latgs~-----------Dg~I~i  570 (711)
                      +..++..+.++.+.+||+.....  ...+..      +.    .....++|+++++.++++..           .++|.+
T Consensus       211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v  290 (361)
T 2oiz_A          211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV  290 (361)
T ss_dssp             SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEE
T ss_pred             CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEE
Confidence            77778888899999999875432  122110      00    11223789999888877654           348999


Q ss_pred             EECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--eEEEEeeCCCCCEEEEEEeCCCC
Q psy14440        571 WDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNG--HLLTLLTGHTDVVRALCFSRDGN  641 (711)
Q Consensus       571 wD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg--~~i~~l~~h~~~V~sl~fspdg~  641 (711)
                      ||+.+++.+..+..+.  +.+++|+|||++|++++. +.|.+||..++  +.+..+..+....+.++++|+|+
T Consensus       291 iD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          291 MDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            9999999999998777  899999999999999887 99999999999  99999877778889999999986

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.66  E-value=3.1e-14  Score=147.73  Aligned_cols=213  Identities=11%  Similarity=0.041  Sum_probs=169.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc-CCEEEEEEcCCCCEEE
Q psy14440        398 DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE-GPVRKLSFSPDRSLLL  476 (711)
Q Consensus       398 dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-~~V~~l~fspdg~~L~  476 (711)
                      .+++|++++.++.|.+||..                               +++.+..+..+. ..+.++.++++|++|+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~-------------------------------tG~~~w~~~~~~~~~~~~~~~~pdG~ilv   52 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKD-------------------------------TKEIVWEYPLEKGWECNSVAATKAGEILF   52 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETT-------------------------------TTEEEEEEECCTTCCCCEEEECTTSCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECC-------------------------------CCeEEEEeCCCccCCCcCeEECCCCCEEE
Confidence            45677777777777777763                               455555555554 4678999999999888


Q ss_pred             EEeCCCeEEEEECCCCeEEEEEecC-CCCEEEEEEcCCCCEEEEEEC-CCeEEEEECCCCceeEEeec------CCCCee
Q psy14440        477 SCSQDNTIRLWSLLLWRCLVVYKGH-GHPVWDIKFSPHGYYFASAGH-DRMARLWATDSYHPLRLFVG------HYSDVD  548 (711)
Q Consensus       477 s~s~Dg~V~iwdl~t~~~~~~~~~h-~~~V~~v~~sp~g~~l~sgs~-Dg~i~lwd~~~~~~~~~~~~------h~~~V~  548 (711)
                        +.++.|..||. +++.+..+..+ ...+.++.+.++|+++++.+. ++.+..+|. +++.+..+..      +.....
T Consensus        53 --s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~  128 (276)
T 3no2_A           53 --SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFR  128 (276)
T ss_dssp             --ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCS
T ss_pred             --eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccccccc
Confidence              45778999999 79999999875 357889999999999999887 778887876 5666666542      223455


Q ss_pred             EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCC
Q psy14440        549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHT  628 (711)
Q Consensus       549 ~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~  628 (711)
                      .+++.++|+++++.+.++.|..||.. |+.+..+..+ ....++.+.++|+++++++.+++|..||..+|+.+.++..+.
T Consensus       129 ~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~  206 (276)
T 3no2_A          129 QINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND  206 (276)
T ss_dssp             CCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG
T ss_pred             CceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC
Confidence            67788999999999999999999987 9999988765 445677888999999999888899999999999999886432


Q ss_pred             ------CCEEEEEEeCCCCEEEEEe
Q psy14440        629 ------DVVRALCFSRDGNILASSG  647 (711)
Q Consensus       629 ------~~V~sl~fspdg~~Lasgs  647 (711)
                            ..+.+++..++|+++++..
T Consensus       207 ~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          207 IEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             SBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CCCccccccccceEcCCCCEEEEec
Confidence                  2378889999999888874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.66  E-value=1.7e-15  Score=177.73  Aligned_cols=241  Identities=12%  Similarity=-0.000  Sum_probs=169.3

Q ss_pred             CCCceEEEEECCCCCEEEE-----EeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc
Q psy14440        386 ARQQVTCAEISEDVSILAV-----GFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE  460 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~Lat-----G~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~  460 (711)
                      |...+.+++|||||++||.     |+.+..|++||+.+++....                             ..+.+. 
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----------------------------~~~~~~-  168 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----------------------------DVIEGG-  168 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----------------------------CCBSCC-
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----------------------------cccCcc-
Confidence            4457899999999999994     44456789998876543200                             000111 


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCe-------------EEEEECCCCe--EEEEE--ecCCCCEEEEEEcCCCCEEEEEECC
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNT-------------IRLWSLLLWR--CLVVY--KGHGHPVWDIKFSPHGYYFASAGHD  523 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~-------------V~iwdl~t~~--~~~~~--~~h~~~V~~v~~sp~g~~l~sgs~D  523 (711)
                       ...+++|+|||+.|+.++.|..             |++|++.++.  ....+  ..|...+.++.|+|+|++++.++.+
T Consensus       169 -~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~  247 (695)
T 2bkl_A          169 -KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILR  247 (695)
T ss_dssp             -TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEE
T ss_pred             -cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeC
Confidence             1257899999999999998776             9999998765  22333  3455688999999999999888766


Q ss_pred             C----eEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEc----CCcEEEEECCCCcE---EEEeeCC-CCCeEE
Q psy14440        524 R----MARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS----DRTIRLWDCVTGSH---VRLLTGH-KAPVYA  591 (711)
Q Consensus       524 g----~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~----Dg~I~iwD~~~~~~---v~~~~~h-~~~I~~  591 (711)
                      +    .|++|+..++. .+.+..+...+....+ ++|. ++..+.    ++.|.+||+.++..   ...+..+ ...+..
T Consensus       248 ~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~  324 (695)
T 2bkl_A          248 GWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLS  324 (695)
T ss_dssp             TTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEE
T ss_pred             CCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEE
Confidence            6    67777665554 4445556666667667 4566 544443    57899999988753   3333333 456888


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEECC-CCeEEEEeeCC-CCCEEEEEEeCCCCEEEEEe----CCCcEEEEeCCCCC
Q psy14440        592 LSFSVCGRFLASAGGDGNVHMWDLS-NGHLLTLLTGH-TDVVRALCFSRDGNILASSG----QDCSVKLWDFAKLS  661 (711)
Q Consensus       592 la~spdg~~Lasgs~Dg~I~iwDl~-sg~~i~~l~~h-~~~V~sl~fspdg~~Lasgs----~Dg~V~iWdl~~~~  661 (711)
                      ++|+ ++.+++++..|+..+||.+. +|+.+..+..+ .+.|.+++++++++.|+...    ..++|++||+.+..
T Consensus       325 ~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          325 VSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            9998 77888899999988887654 46666667665 56788889999998666332    34789999997643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.66  E-value=2.7e-14  Score=148.65  Aligned_cols=200  Identities=18%  Similarity=0.107  Sum_probs=153.3

Q ss_pred             EEEeecccCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy14440        453 TRTLVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWAT  531 (711)
Q Consensus       453 ~~~l~~h~~~V~~l~fspdg~-~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~  531 (711)
                      ...+..+.....+++|+++++ .++++..++.|..||..++  ...+..+...+.+++++++|+++++...++.|.+||.
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence            345555667788999999998 7778888999999999877  6677777888999999999998877777799999999


Q ss_pred             CCCceeEEeec----CCCCeeEEEEcCCCCEEEEEEc-----------------CCcEEEEECCCCcEEEEeeCCCCCeE
Q psy14440        532 DSYHPLRLFVG----HYSDVDCVQFHPNSNYVATGSS-----------------DRTIRLWDCVTGSHVRLLTGHKAPVY  590 (711)
Q Consensus       532 ~~~~~~~~~~~----h~~~V~~v~~sp~~~~latgs~-----------------Dg~I~iwD~~~~~~v~~~~~h~~~I~  590 (711)
                      .+++.......    ....+..++++++|+++++.+.                 .+.|..+|.. ++ +..+..+.....
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~  175 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPN  175 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEE
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCc
Confidence            87775444322    1235678999999998887321                 2456666654 44 445556677789


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECC-CCeE---EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        591 ALSFSVCGRFLASAGGDGNVHMWDLS-NGHL---LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       591 ~la~spdg~~Lasgs~Dg~I~iwDl~-sg~~---i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      .++|+++|+.|++.+.++.|.+||+. +|+.   ...+..+.+.+.+++++++|+++++.  ++.|.+||..
T Consensus       176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence            99999999999777788999999997 5655   33343345667889999999977766  8899999864

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.63  E-value=5.1e-14  Score=149.59  Aligned_cols=246  Identities=8%  Similarity=-0.029  Sum_probs=180.4

Q ss_pred             CCCeEEEEeCCCCceeeeccC----------------ccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcC
Q psy14440        407 SESYIKLWSLVPQKLKAMKSS----------------DQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSP  470 (711)
Q Consensus       407 ~dg~I~vWdl~~~~~~~~~~~----------------~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fsp  470 (711)
                      .++.|.+||..+.++......                .....++....++.+.+||..+++.+.++.. ......+++++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~   93 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLS   93 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeC
Confidence            478999999987765432110                0112233344578899999999998888753 46689999998


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEEecCC-----CCEEEEEEcCCCCEEEEEE--CCCeEEEEECCCCceeEEeecC
Q psy14440        471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHG-----HPVWDIKFSPHGYYFASAG--HDRMARLWATDSYHPLRLFVGH  543 (711)
Q Consensus       471 dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~-----~~V~~v~~sp~g~~l~sgs--~Dg~i~lwd~~~~~~~~~~~~h  543 (711)
                      +++.+++...++.|.+||..+++....+....     .....+++ . +..+++++  .+++|.+||..+++.+..+...
T Consensus        94 ~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g  171 (328)
T 3dsm_A           94 DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG  171 (328)
T ss_dssp             TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence            98544444488999999999999887776433     14456777 3 44444444  4899999999999887776543


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcC----------CcEEEEECCCCcEEEEeeCC-CCCeEEEEEecCCCEEEEEeCCCcEEE
Q psy14440        544 YSDVDCVQFHPNSNYVATGSSD----------RTIRLWDCVTGSHVRLLTGH-KAPVYALSFSVCGRFLASAGGDGNVHM  612 (711)
Q Consensus       544 ~~~V~~v~~sp~~~~latgs~D----------g~I~iwD~~~~~~v~~~~~h-~~~I~~la~spdg~~Lasgs~Dg~I~i  612 (711)
                       .....++++++|++++++..+          +.|.+||..+++....+... ......++|++++++|+++..  .|.+
T Consensus       172 -~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~  248 (328)
T 3dsm_A          172 -IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWR  248 (328)
T ss_dssp             -SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEE
T ss_pred             -CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEE
Confidence             346789999999877776654          78999999999887776532 246899999999999988765  8999


Q ss_pred             EECCCCeEEEE--eeCCCCCEEEEEEeC-CCCEEEEE----eCCCcEEEEeCC
Q psy14440        613 WDLSNGHLLTL--LTGHTDVVRALCFSR-DGNILASS----GQDCSVKLWDFA  658 (711)
Q Consensus       613 wDl~sg~~i~~--l~~h~~~V~sl~fsp-dg~~Lasg----s~Dg~V~iWdl~  658 (711)
                      ||..+++....  +..+.....+++++| +++++++.    ..+++|.+||..
T Consensus       249 ~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          249 MPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             EETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             EECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            99998876421  122245789999998 56666666    578999999976

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.62  E-value=9.7e-14  Score=163.10  Aligned_cols=199  Identities=12%  Similarity=0.037  Sum_probs=148.4

Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCe--------
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDN-----TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRM--------  525 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg-----~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~--------  525 (711)
                      |...+.+++|||||++|+.++.++     +|++||+.+++.+.....+ ..+.+++|+|||+.|+.++.++.        
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence            445688999999999998776543     8999999999877643322 23667999999999999988766        


Q ss_pred             --------EEEEECCCCce--eEEeec--CCCCeeEEEEcCCCCEEEEEEc-----CCcEEEEECCC------Cc-EEEE
Q psy14440        526 --------ARLWATDSYHP--LRLFVG--HYSDVDCVQFHPNSNYVATGSS-----DRTIRLWDCVT------GS-HVRL  581 (711)
Q Consensus       526 --------i~lwd~~~~~~--~~~~~~--h~~~V~~v~~sp~~~~latgs~-----Dg~I~iwD~~~------~~-~v~~  581 (711)
                              |++|++.++..  ...+..  |...+..+.|+|+|++|+.++.     +..|++||+.+      +. ..+.
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                    99999988763  233333  4455789999999999998875     56899999986      53 4566


Q ss_pred             eeCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCe--EEEEeeCCCC--CEEEEEEeCCCCEEEEEeCCCc--
Q psy14440        582 LTGHKAPVYALSFSVCGRFLASAGGD----GNVHMWDLSNGH--LLTLLTGHTD--VVRALCFSRDGNILASSGQDCS--  651 (711)
Q Consensus       582 ~~~h~~~I~~la~spdg~~Lasgs~D----g~I~iwDl~sg~--~i~~l~~h~~--~V~sl~fspdg~~Lasgs~Dg~--  651 (711)
                      +..+...+.. .|+++|+.|+..+.+    +.|.+||+.++.  ....+..|..  .+.+++|++++.+++++..|+.  
T Consensus       282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~  360 (710)
T 2xdw_A          282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (710)
T ss_dssp             EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence            6667666655 488999988776653    369999998874  2344444543  6888999987888888888885  


Q ss_pred             EEEEeCCC
Q psy14440        652 VKLWDFAK  659 (711)
Q Consensus       652 V~iWdl~~  659 (711)
                      |++||+..
T Consensus       361 l~~~~~~~  368 (710)
T 2xdw_A          361 LQLHDLAT  368 (710)
T ss_dssp             EEEEETTT
T ss_pred             EEEEECCC
Confidence            55566533

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.62  E-value=2.2e-13  Score=142.27  Aligned_cols=247  Identities=10%  Similarity=0.093  Sum_probs=175.0

Q ss_pred             EEecCCCceEEEEECCCCCEEEE-------EeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEE
Q psy14440        382 TLLNARQQVTCAEISEDVSILAV-------GFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTR  454 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~Lat-------G~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  454 (711)
                      .+...-....+++|+++|+++++       +..++.|.+|+..++++..+..                           .
T Consensus        12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---------------------------~   64 (314)
T 1pjx_A           12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---------------------------P   64 (314)
T ss_dssp             EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC---------------------------C
T ss_pred             hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe---------------------------c
Confidence            34555567889999999998888       5677889999875544321100                           0


Q ss_pred             EeecccCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEE-Eec----CCCCEEEEEEcCCCCEEEEEECC-----
Q psy14440        455 TLVGHEGPVRKLSFSPD-RSLLLSCSQDNTIRLWSLLLWRCLVV-YKG----HGHPVWDIKFSPHGYYFASAGHD-----  523 (711)
Q Consensus       455 ~l~~h~~~V~~l~fspd-g~~L~s~s~Dg~V~iwdl~t~~~~~~-~~~----h~~~V~~v~~sp~g~~l~sgs~D-----  523 (711)
                      ...++...+.+++++++ +++++ ++..+.|.+||.. ++.... ...    ....+.+++++++|+++++...+     
T Consensus        65 ~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~  142 (314)
T 1pjx_A           65 EVNGYGGIPAGCQCDRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPA  142 (314)
T ss_dssp             EETTEECCEEEEEECSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTS
T ss_pred             ccCCCCCCCceEEEecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccc
Confidence            01124467899999999 65444 4444579999998 665433 221    12458899999999887777655     


Q ss_pred             ----------CeEEEEECCCCceeEEeecCCCCeeEEEEc----CCCCEEEEE-EcCCcEEEEECC-CCc-----EEEEe
Q psy14440        524 ----------RMARLWATDSYHPLRLFVGHYSDVDCVQFH----PNSNYVATG-SSDRTIRLWDCV-TGS-----HVRLL  582 (711)
Q Consensus       524 ----------g~i~lwd~~~~~~~~~~~~h~~~V~~v~~s----p~~~~latg-s~Dg~I~iwD~~-~~~-----~v~~~  582 (711)
                                +.|..|+.+ ++... +..+......++|+    ++++.|+++ +.++.|.+||.. +++     ....+
T Consensus       143 ~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~  220 (314)
T 1pjx_A          143 DYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI  220 (314)
T ss_dssp             CCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred             cccccccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC
Confidence                      567777765 44333 33344557889999    999766555 457899999986 454     22333


Q ss_pred             eCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEeCCC
Q psy14440        583 TGHK-APVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNIL-ASSGQDCSVKLWDFAK  659 (711)
Q Consensus       583 ~~h~-~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~L-asgs~Dg~V~iWdl~~  659 (711)
                      .++. ..+..++++++|+++++...++.|.+||..+++.+..+..+...+.+++|+++|+.| ++...++.|..|++..
T Consensus       221 ~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          221 PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            3444 568899999999988888788999999998788777777777789999999999955 4555678999999864

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.60  E-value=6.5e-12  Score=129.54  Aligned_cols=243  Identities=9%  Similarity=0.009  Sum_probs=172.2

Q ss_pred             CeEEEEeCCCC--ceeeeccCccccccccccCCcEEEEEecCCCeeEEE-eecccCCEEEEEEcCCCCEEEEEeCCCeEE
Q psy14440        409 SYIKLWSLVPQ--KLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRT-LVGHEGPVRKLSFSPDRSLLLSCSQDNTIR  485 (711)
Q Consensus       409 g~I~vWdl~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~  485 (711)
                      |.+..|.+...  ....+....+...+.....++.+.+||.. +..... +..+...+.+++++++|..+++...++.|.
T Consensus         3 g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~   81 (299)
T 2z2n_A            3 FKLQELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIG   81 (299)
T ss_dssp             EEEEEEECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             ceEEEEcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEE
Confidence            34444544322  23334444444434334446788889877 443322 223557799999999998888777788999


Q ss_pred             EEECCCCeEEEEEe--cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEE-eecCCCCeeEEEEcCCCCEEEEE
Q psy14440        486 LWSLLLWRCLVVYK--GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL-FVGHYSDVDCVQFHPNSNYVATG  562 (711)
Q Consensus       486 iwdl~t~~~~~~~~--~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~~~latg  562 (711)
                      .||.. ++. ..+.  .....+.++++.++|+++++...++.|.+||. +++.... ...+...+.+++++++++.+++.
T Consensus        82 ~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  158 (299)
T 2z2n_A           82 RITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTE  158 (299)
T ss_dssp             EECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred             EECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEe
Confidence            99986 332 2232  34567899999999988888777899999998 4443332 22345678999999999887777


Q ss_pred             EcCCcEEEEECCCCcEEEE-eeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE-eeCCCCCEEEEEEeCCC
Q psy14440        563 SSDRTIRLWDCVTGSHVRL-LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTL-LTGHTDVVRALCFSRDG  640 (711)
Q Consensus       563 s~Dg~I~iwD~~~~~~v~~-~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~-l~~h~~~V~sl~fspdg  640 (711)
                      ..++.|..||. +++.... ...+...+.+++++++|+++++...++.|.+||. +++.... ...+...+.+++++++|
T Consensus       159 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g  236 (299)
T 2z2n_A          159 NQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGI  236 (299)
T ss_dssp             TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTT
T ss_pred             CCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCC
Confidence            77789999998 6765443 2334567889999999997777767889999999 7765432 23345679999999999


Q ss_pred             CEEEEEeCCCcEEEEeC
Q psy14440        641 NILASSGQDCSVKLWDF  657 (711)
Q Consensus       641 ~~Lasgs~Dg~V~iWdl  657 (711)
                      +++++...++.|.+||.
T Consensus       237 ~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          237 DLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             CEEEEETTTTEEEEEET
T ss_pred             CEEEeccCCceEEEECC
Confidence            97777667889999997

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.58  E-value=4e-14  Score=165.97  Aligned_cols=196  Identities=9%  Similarity=-0.010  Sum_probs=143.1

Q ss_pred             cccCCEEEEEEcCCCCEEE-----EEeCCCeEEEEECCCCeEEEEEecCCCCE--EEEEEcCCCCEEEEEECCCe-----
Q psy14440        458 GHEGPVRKLSFSPDRSLLL-----SCSQDNTIRLWSLLLWRCLVVYKGHGHPV--WDIKFSPHGYYFASAGHDRM-----  525 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~-----s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V--~~v~~sp~g~~l~sgs~Dg~-----  525 (711)
                      +|...+.+++|||||++|+     +|+.+.+|++||+.+++.+.  ..+...+  .+++|+|+|+.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            4556789999999999998     44456789999999987641  1122222  67999999999999998876     


Q ss_pred             --------EEEEECCCCce--eEEee--cCCCCeeEEEEcCCCCEEEEEEcCC----cEEEEECCCCcEEEEeeCCCCCe
Q psy14440        526 --------ARLWATDSYHP--LRLFV--GHYSDVDCVQFHPNSNYVATGSSDR----TIRLWDCVTGSHVRLLTGHKAPV  589 (711)
Q Consensus       526 --------i~lwd~~~~~~--~~~~~--~h~~~V~~v~~sp~~~~latgs~Dg----~I~iwD~~~~~~v~~~~~h~~~I  589 (711)
                              |++|++.++..  ...+.  .+...+.++.|+|+|++|+.++.++    .|++||..++. .+.+..+...+
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~  274 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAK  274 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCC
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCce
Confidence                    99999988762  23333  3556788999999999999888766    67778766665 44455555666


Q ss_pred             EEEEEecCCCEEEEEe---CCCcEEEEECCCCeE---EEEeeCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        590 YALSFSVCGRFLASAG---GDGNVHMWDLSNGHL---LTLLTGH-TDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       590 ~~la~spdg~~Lasgs---~Dg~I~iwDl~sg~~---i~~l~~h-~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      ....+ ++|++++++.   .++.|.+||+.++..   ...+..+ ...+.+++|+ ++.+++++..|+..+||.+.
T Consensus       275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            66666 5666444444   257899999987753   3333333 4568889998 77888999999998888765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.58  E-value=1.1e-13  Score=163.42  Aligned_cols=239  Identities=13%  Similarity=0.034  Sum_probs=166.2

Q ss_pred             CceEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCC
Q psy14440        388 QQVTCAEISEDVSILAVGFSE-----SYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGP  462 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~d-----g~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~  462 (711)
                      ..+.+++|||||++||.+..+     ..|++||+.+++..                               .. ..+...
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~-------------------------------~~-~~~~~~  210 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL-------------------------------AD-ELKWVK  210 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE-------------------------------EE-EEEEEE
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------------Cc-cCCCce
Confidence            367889999999999987654     35777777654321                               11 111112


Q ss_pred             EEEEEEcCCCCEEEEEeCCCe--------------EEEEECCCCe--EEEEEec--CCCCEEEEEEcCCCCEEEEEECCC
Q psy14440        463 VRKLSFSPDRSLLLSCSQDNT--------------IRLWSLLLWR--CLVVYKG--HGHPVWDIKFSPHGYYFASAGHDR  524 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s~Dg~--------------V~iwdl~t~~--~~~~~~~--h~~~V~~v~~sp~g~~l~sgs~Dg  524 (711)
                      +.+++|+|| +.|+.++.|+.              |++|++.++.  ....+..  +...+.++.|+|+|++++.++.++
T Consensus       211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~  289 (741)
T 1yr2_A          211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG  289 (741)
T ss_dssp             SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred             eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence            357899999 98888877654              8999997665  2333443  334588999999999988887554


Q ss_pred             -----eEEEEECCCC--ceeEEeecCCCCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCC--cEEEEeeCCCCCeEE
Q psy14440        525 -----MARLWATDSY--HPLRLFVGHYSDVDCVQFHPNSNYVATGSSD----RTIRLWDCVTG--SHVRLLTGHKAPVYA  591 (711)
Q Consensus       525 -----~i~lwd~~~~--~~~~~~~~h~~~V~~v~~sp~~~~latgs~D----g~I~iwD~~~~--~~v~~~~~h~~~I~~  591 (711)
                           .|++||++++  ...+.+..+...+.... +++|+.|+..+.+    +.|.+||+.++  +....+..+...+..
T Consensus       290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~  368 (741)
T 1yr2_A          290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES  368 (741)
T ss_dssp             TCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred             CCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence                 8999999876  42455555555555554 4889988888764    45999999875  334444455556777


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEECC-CCeEEEEeeCC-CCCEEEEEEeCCCCEEEE-Ee---CCCcEEEEeCCCCC
Q psy14440        592 LSFSVCGRFLASAGGDGNVHMWDLS-NGHLLTLLTGH-TDVVRALCFSRDGNILAS-SG---QDCSVKLWDFAKLS  661 (711)
Q Consensus       592 la~spdg~~Lasgs~Dg~I~iwDl~-sg~~i~~l~~h-~~~V~sl~fspdg~~Las-gs---~Dg~V~iWdl~~~~  661 (711)
                      ++|+ ++.++++...||..+||.+. +|+.+..+..+ .+.|..++++++++.|+. .+   ..++|++||+.+..
T Consensus       369 ~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          369 VGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            8887 66778888888877776543 46666667653 577899999999875553 22   34789999987643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.58  E-value=8.8e-12  Score=128.57  Aligned_cols=268  Identities=9%  Similarity=-0.004  Sum_probs=187.5

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeecc------------CccccccccccCCcEEEEEecCC
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKS------------SDQLQDIEMECDDILVRIMDERN  449 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~------------~~~~~~l~~~~~d~~i~i~d~~~  449 (711)
                      .+......+.+++++++|++.++...++.|.+|+.. .++.....            ..+.........++.|..+|.. 
T Consensus        14 ~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-   91 (300)
T 2qc5_A           14 NLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-   91 (300)
T ss_dssp             ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             ecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence            334456789999999999988888788999999987 44433211            1222222233345778888876 


Q ss_pred             CeeEE-EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-EecCCCCEEEEEEcCCCCEEEEEECCCeEE
Q psy14440        450 AETTR-TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV-YKGHGHPVWDIKFSPHGYYFASAGHDRMAR  527 (711)
Q Consensus       450 ~~~~~-~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~-~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~  527 (711)
                      ++... .+......+.+++++++|+++++...++.|..||.. ++.... +......+.++++.++|+.+++...++.|.
T Consensus        92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  170 (300)
T 2qc5_A           92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG  170 (300)
T ss_dssp             SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence            44332 222244678999999999887777778899999987 554432 233456789999999999777766688999


Q ss_pred             EEECCCCceeEE-eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-eeCCCCCeEEEEEecCCCEEEEEe
Q psy14440        528 LWATDSYHPLRL-FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRL-LTGHKAPVYALSFSVCGRFLASAG  605 (711)
Q Consensus       528 lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~-~~~h~~~I~~la~spdg~~Lasgs  605 (711)
                      .|+. +++.... ...+...+.+++++++++.+++....+.|.+||. +++.... +..+...+.+++++++|+++++..
T Consensus       171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  248 (300)
T 2qc5_A          171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW  248 (300)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred             EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc
Confidence            9998 4544332 2234567899999999987777666778999998 5554433 233456789999999999777666


Q ss_pred             CCCcEEEEECCCCeEEEE-eeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        606 GDGNVHMWDLSNGHLLTL-LTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       606 ~Dg~I~iwDl~sg~~i~~-l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      .++.|..||. +++.... +......+.+++++++|+++++.. . .|..+|.
T Consensus       249 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          249 GANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             TTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            6789999998 5554322 333446688999999998766554 4 6766664

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.57  E-value=3.5e-13  Score=139.70  Aligned_cols=232  Identities=12%  Similarity=0.058  Sum_probs=175.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEEecCC-CCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecC-CCCee
Q psy14440        471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHG-HPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGH-YSDVD  548 (711)
Q Consensus       471 dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~-~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h-~~~V~  548 (711)
                      .++.|++++.|+.|.+||..+++.+..+..+. ..+.++.++|+|++++  +.++.|..||. +++.+..+..+ ...+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            46789999999999999999999999998776 5788999999999888  45788999999 78888888765 35788


Q ss_pred             EEEEcCCCCEEEEEEc-CCcEEEEECCCCcEEEEeeC------CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE
Q psy14440        549 CVQFHPNSNYVATGSS-DRTIRLWDCVTGSHVRLLTG------HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLL  621 (711)
Q Consensus       549 ~v~~sp~~~~latgs~-Dg~I~iwD~~~~~~v~~~~~------h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i  621 (711)
                      ++.+.++|+++++.+. ++.|..+|. +|+.+..+..      +......+++.++|++|++...++.|..||.. |+.+
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence            9999999999999887 778888885 7887777652      22345566788999999999999999999987 9999


Q ss_pred             EEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcccc--c---cccccc-cccccccceeeecccCC--
Q psy14440        622 TLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEV--N---LSHSAD-IKNSSLAYLVRSYKTKA--  693 (711)
Q Consensus       622 ~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~--~---~~~~~~-~~~~~~~~~l~~~~t~~--  693 (711)
                      ..+..+ ..+.++.+.++|+++++++.+++|..||..+..........  .   ...... ........++..|.+|.  
T Consensus       159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~  237 (276)
T 3no2_A          159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDRE  237 (276)
T ss_dssp             EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTT
T ss_pred             EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcccc
Confidence            988765 34567788899999999988889999998765442221100  0   000000 01123344556666653  


Q ss_pred             ----cceEEEEEccCCeee
Q psy14440        694 ----SPLLHLIFSRRNILL  708 (711)
Q Consensus       694 ----~pV~~v~Fs~~n~ll  708 (711)
                          .....+.+++++.++
T Consensus       238 ~~~~~~~~~~~~~~~g~~~  256 (276)
T 3no2_A          238 AGKGKHPQLVEIDSEGKVV  256 (276)
T ss_dssp             GGGSCCCSEEEECTTSBEE
T ss_pred             ccccCCceEEEECCCCCEE
Confidence                355677788888765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.55  E-value=9e-12  Score=142.00  Aligned_cols=275  Identities=15%  Similarity=0.062  Sum_probs=194.5

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEeCC--CCcee----------eeccC----cccccccccc-CCcEEEEEecC
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLV--PQKLK----------AMKSS----DQLQDIEMEC-DDILVRIMDER  448 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~--~~~~~----------~~~~~----~~~~~l~~~~-~d~~i~i~d~~  448 (711)
                      ....+.++.||+||+++++++.++.|.+||+.  +.++.          .+..+    .++..+.+.+ ..+.+.++|..
T Consensus       195 ~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~  274 (567)
T 1qks_A          195 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  274 (567)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence            34467799999999999999999999999995  43322          12333    2444444333 45788999999


Q ss_pred             CCeeEEEeec----------ccC-CEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeEEEEE-ecCCCCEEEEEEcCCCC
Q psy14440        449 NAETTRTLVG----------HEG-PVRKLSFSPDRSL-LLSCSQDNTIRLWSLLLWRCLVVY-KGHGHPVWDIKFSPHGY  515 (711)
Q Consensus       449 ~~~~~~~l~~----------h~~-~V~~l~fspdg~~-L~s~s~Dg~V~iwdl~t~~~~~~~-~~h~~~V~~v~~sp~g~  515 (711)
                      +.+.+..+..          |.. .+.++.+++++.. +++...+|.|.++|..+.+.+... ........++.|+++|+
T Consensus       275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr  354 (567)
T 1qks_A          275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR  354 (567)
T ss_dssp             TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCC
Confidence            9888876642          212 6888999988664 445556799999999765433222 22455678899999999


Q ss_pred             EEEEEE-CCCeEEEEECCCCceeEEeec-----CCCCeeEEEEcCCCCEEE-EEE-cCCcEEEEECCC-------CcEEE
Q psy14440        516 YFASAG-HDRMARLWATDSYHPLRLFVG-----HYSDVDCVQFHPNSNYVA-TGS-SDRTIRLWDCVT-------GSHVR  580 (711)
Q Consensus       516 ~l~sgs-~Dg~i~lwd~~~~~~~~~~~~-----h~~~V~~v~~sp~~~~la-tgs-~Dg~I~iwD~~~-------~~~v~  580 (711)
                      +|+++. .+++|.++|+.+++.+..+.-     |.+.-..+ ++|++..++ ++. .+++|.++|..+       .+.++
T Consensus       355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~  433 (567)
T 1qks_A          355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD  433 (567)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred             EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence            887766 678999999999987766543     32211122 588755554 443 468999999988       67788


Q ss_pred             EeeCCCCCeEEEEEecCCCEEEEEeC-------CCcEEEEECCCC-----e-EEEEee--------CCCCCEEEEEEeCC
Q psy14440        581 LLTGHKAPVYALSFSVCGRFLASAGG-------DGNVHMWDLSNG-----H-LLTLLT--------GHTDVVRALCFSRD  639 (711)
Q Consensus       581 ~~~~h~~~I~~la~spdg~~Lasgs~-------Dg~I~iwDl~sg-----~-~i~~l~--------~h~~~V~sl~fspd  639 (711)
                      .+......-..+..+|++++|++...       .++|.|+|+.+.     . .+..+.        .-...+..+.|+++
T Consensus       434 ~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (567)
T 1qks_A          434 SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD  513 (567)
T ss_dssp             EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT
T ss_pred             EEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCC
Confidence            88765444455788999999998763       359999999876     2 123332        12357899999999


Q ss_pred             CCEEEEEe-----CCCcEEEEeCCCCC
Q psy14440        640 GNILASSG-----QDCSVKLWDFAKLS  661 (711)
Q Consensus       640 g~~Lasgs-----~Dg~V~iWdl~~~~  661 (711)
                      |+.+..+.     .++.|.|+|..++.
T Consensus       514 G~~~~~s~~~~~~~~~~i~v~D~~t~~  540 (567)
T 1qks_A          514 GTEVWFSVWNGKDQESALVVVDDKTLE  540 (567)
T ss_dssp             SSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             CCEEEEEeecCCCCCCcEEEEECCCce
Confidence            99776653     37899999988754

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.55  E-value=6.3e-13  Score=135.65  Aligned_cols=197  Identities=6%  Similarity=-0.031  Sum_probs=144.8

Q ss_pred             CEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEe
Q psy14440        462 PVRKLSFSPDRSLLL-SCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF  540 (711)
Q Consensus       462 ~V~~l~fspdg~~L~-s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~  540 (711)
                      ...+++++++|+.++ +.+.++.|.+||..+.........+...+.+++++++|+.+++.. ++.|.+||.+........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            678999999998666 446788999999865543322223345678899999998666655 889999998865443322


Q ss_pred             ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q psy14440        541 VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL  620 (711)
Q Consensus       541 ~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~  620 (711)
                      ......+.+++++++|+.+++...++.|.+||..+.............+.+++++++|+++++...++.|.+||...+..
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            23346789999999999777777788999998765544333333334678999999999777777788999999887765


Q ss_pred             EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        621 LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       621 i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ......+...+.+++++++|+++++...++.|.+||...
T Consensus       184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~  222 (270)
T 1rwi_B          184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  222 (270)
T ss_dssp             EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred             EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence            544334446789999999998888877889999999754

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.55  E-value=3.2e-12  Score=135.62  Aligned_cols=219  Identities=10%  Similarity=-0.001  Sum_probs=165.1

Q ss_pred             ccCCcEEEEEecCCCeeEEEee------cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEE
Q psy14440        436 ECDDILVRIMDERNAETTRTLV------GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIK  509 (711)
Q Consensus       436 ~~~d~~i~i~d~~~~~~~~~l~------~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~  509 (711)
                      +..++.|.++|..+++....+.      .......++.+. +++.+++...+++|.+||..+++.+..+. .......++
T Consensus        13 g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~   90 (328)
T 3dsm_A           13 QYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIH   90 (328)
T ss_dssp             TSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEE
T ss_pred             CCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEE
Confidence            3457899999999888765442      122346778874 44455555667999999999999988886 456788999


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCCceeEEeecCC-----CCeeEEEEcCCCCEEEEEE--cCCcEEEEECCCCcEEEEe
Q psy14440        510 FSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHY-----SDVDCVQFHPNSNYVATGS--SDRTIRLWDCVTGSHVRLL  582 (711)
Q Consensus       510 ~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~-----~~V~~v~~sp~~~~latgs--~Dg~I~iwD~~~~~~v~~~  582 (711)
                      ++++++.+++...++.|.+||..+++....+....     .....+++  ++..+++++  .+++|.+||..+++.+..+
T Consensus        91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i  168 (328)
T 3dsm_A           91 FLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL  168 (328)
T ss_dssp             EEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence            98888555555489999999999988776665332     14567777  345555555  4889999999999988877


Q ss_pred             eCCCCCeEEEEEecCCCEEEEEeCC----------CcEEEEECCCCeEEEEeeCC-CCCEEEEEEeCCCCEEEEEeCCCc
Q psy14440        583 TGHKAPVYALSFSVCGRFLASAGGD----------GNVHMWDLSNGHLLTLLTGH-TDVVRALCFSRDGNILASSGQDCS  651 (711)
Q Consensus       583 ~~h~~~I~~la~spdg~~Lasgs~D----------g~I~iwDl~sg~~i~~l~~h-~~~V~sl~fspdg~~Lasgs~Dg~  651 (711)
                      ... .....++++++|++++++..+          +.|.+||..+++....+... ......++|+++++.|+++..  .
T Consensus       169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~  245 (328)
T 3dsm_A          169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D  245 (328)
T ss_dssp             ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S
T ss_pred             EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E
Confidence            643 345788999999977776654          78999999999988777643 246899999999999888764  8


Q ss_pred             EEEEeCCCCC
Q psy14440        652 VKLWDFAKLS  661 (711)
Q Consensus       652 V~iWdl~~~~  661 (711)
                      |.+||..+..
T Consensus       246 v~~~d~~t~~  255 (328)
T 3dsm_A          246 IWRMPVEADR  255 (328)
T ss_dssp             EEEEETTCSS
T ss_pred             EEEEECCCCc
Confidence            9999987543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.54  E-value=1.5e-11  Score=140.25  Aligned_cols=262  Identities=11%  Similarity=-0.008  Sum_probs=192.7

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCcee----------eeccCccccccccccCCcEEEEEecC--CCeeEEEeecccCCEE
Q psy14440        397 EDVSILAVGFSESYIKLWSLVPQKLK----------AMKSSDQLQDIEMECDDILVRIMDER--NAETTRTLVGHEGPVR  464 (711)
Q Consensus       397 ~dg~~LatG~~dg~I~vWdl~~~~~~----------~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~l~~h~~~V~  464 (711)
                      +++.++++...+++|.+||..+.++.          .+..+.+...+.+++.++.|.+||..  +.+.+..+....+ ..
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~  243 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-AR  243 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-Cc
Confidence            44556777788899999999886643          23445666777777788999999985  7777777765444 57


Q ss_pred             EEEEc----CCCCEEEEEeC-CCeEEEEECCCCeEEEEEecC-----------CCCEEEEEEcCCCCEE-EEEECCCeEE
Q psy14440        465 KLSFS----PDRSLLLSCSQ-DNTIRLWSLLLWRCLVVYKGH-----------GHPVWDIKFSPHGYYF-ASAGHDRMAR  527 (711)
Q Consensus       465 ~l~fs----pdg~~L~s~s~-Dg~V~iwdl~t~~~~~~~~~h-----------~~~V~~v~~sp~g~~l-~sgs~Dg~i~  527 (711)
                      .++|+    |||+++++++. +++|.++|..+.+.+..+...           ...+..+..++++..+ +....+|.|.
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~  323 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  323 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence            99999    69999888765 589999999999988876532           1257788888876544 4455679999


Q ss_pred             EEECCCCceeEEee-cCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEeeC-----CCCCeEEEEEecCCCE
Q psy14440        528 LWATDSYHPLRLFV-GHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSHVRLLTG-----HKAPVYALSFSVCGRF  600 (711)
Q Consensus       528 lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~v~~~~~-----h~~~I~~la~spdg~~  600 (711)
                      ++|....+.+.... .......++.|+++++++++++ .+++|.++|+.+++.+..+..     |.+....+ ++|++..
T Consensus       324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~  402 (567)
T 1qks_A          324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGP  402 (567)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEE
T ss_pred             EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCc
Confidence            99998764332211 2344577899999999988776 578999999999988776653     33222222 5787554


Q ss_pred             EE-EEe-CCCcEEEEECCC-------CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC-------CCcEEEEeCCCC
Q psy14440        601 LA-SAG-GDGNVHMWDLSN-------GHLLTLLTGHTDVVRALCFSRDGNILASSGQ-------DCSVKLWDFAKL  660 (711)
Q Consensus       601 La-sgs-~Dg~I~iwDl~s-------g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~-------Dg~V~iWdl~~~  660 (711)
                      ++ ++. .++.|.++|..+       .+.+.++......-..+..+|++++|.+...       .++|.|+|+.++
T Consensus       403 v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          403 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            44 443 468999999987       6788888865444345778999999988663       359999999875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.54  E-value=4.7e-12  Score=138.80  Aligned_cols=234  Identities=10%  Similarity=0.134  Sum_probs=167.6

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEE
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLS  467 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~  467 (711)
                      ....+++|+++++++++...++.|++|+..++.+..                               ....... .. ++
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~-------------------------------~~~~~~~-~~-ia  177 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT-------------------------------VHPGFKG-GK-PA  177 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE-------------------------------EEETCCB-CB-CE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE-------------------------------eeccCCC-Cc-ee
Confidence            467899999999988888878899999886543321                               1111122 23 89


Q ss_pred             EcCCCCEEEEEeCCC--eEEEEECCCCeEEEEE----ecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEE--
Q psy14440        468 FSPDRSLLLSCSQDN--TIRLWSLLLWRCLVVY----KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL--  539 (711)
Q Consensus       468 fspdg~~L~s~s~Dg--~V~iwdl~t~~~~~~~----~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~--  539 (711)
                      |+++++.|+++..++  .|.+|+...+.....+    ......++++++++++..|+++..++.|+.||.+++.....  
T Consensus       178 ~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~  257 (409)
T 3hrp_A          178 VTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQ  257 (409)
T ss_dssp             ECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEE
T ss_pred             EecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEec
Confidence            999999999988866  7889988765443333    21456678999999555555677789999999987753332  


Q ss_pred             --eecCCCCe--eEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEeeCCC---------------CCeEEEEEecCCC
Q psy14440        540 --FVGHYSDV--DCVQFHPN-SNYVATGSSDRTIRLWDCVTGSHVRLLTGHK---------------APVYALSFSVCGR  599 (711)
Q Consensus       540 --~~~h~~~V--~~v~~sp~-~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~---------------~~I~~la~spdg~  599 (711)
                        ..++...-  ..++|+|+ +.++++...++.|+.||....  +..+.++.               .....++++++|+
T Consensus       258 ~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~  335 (409)
T 3hrp_A          258 LELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN  335 (409)
T ss_dssp             CCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred             ccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence              22222222  39999995 555555566889999997543  34444432               3478999999999


Q ss_pred             EEEEEe-CCCcEEEEECCCCeEEEEeeCC---------------CCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        600 FLASAG-GDGNVHMWDLSNGHLLTLLTGH---------------TDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       600 ~Lasgs-~Dg~I~iwDl~sg~~i~~l~~h---------------~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      ++++-+ .+++|+.||+.+|+. ..+.++               -....+++++++|+++++-..+++|+.+++
T Consensus       336 lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          336 FYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            777777 789999999888874 344443               245889999999988888888899998875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.51  E-value=1.2e-11  Score=129.09  Aligned_cols=227  Identities=14%  Similarity=0.169  Sum_probs=159.9

Q ss_pred             CCceEEEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEE
Q psy14440        387 RQQVTCAEISED-VSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRK  465 (711)
Q Consensus       387 ~~~V~~l~fs~d-g~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~  465 (711)
                      ..-.-+..|+++ +.++++...++.|..|+..+....                                .+ .+...+.+
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~--------------------------------~~-~~~~~~~~   58 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ--------------------------------RV-TMDAPVSS   58 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE--------------------------------EE-ECSSCEEE
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE--------------------------------EE-eCCCceEE
Confidence            344568889985 556677777888988887543321                                11 12456899


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC----CCCEEEEEEcCCCCEEEEEECC---------CeEEEEECC
Q psy14440        466 LSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH----GHPVWDIKFSPHGYYFASAGHD---------RMARLWATD  532 (711)
Q Consensus       466 l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h----~~~V~~v~~sp~g~~l~sgs~D---------g~i~lwd~~  532 (711)
                      ++++++|++++ +. ++.|.+||..+++........    ...+.+++++++|+++++....         ....+|.++
T Consensus        59 i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d  136 (297)
T 3g4e_A           59 VALRQSGGYVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLF  136 (297)
T ss_dssp             EEEBTTSSEEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEEC
T ss_pred             EEECCCCCEEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEE
Confidence            99999999544 44 567999999888765444321    2457899999999866654322         334555554


Q ss_pred             CCceeEEeecCCCCeeEEEEcCCCCEEEEE-EcCCcEEEEEC--CCCcE-----EEEeeCCCCCeEEEEEecCCCEEEEE
Q psy14440        533 SYHPLRLFVGHYSDVDCVQFHPNSNYVATG-SSDRTIRLWDC--VTGSH-----VRLLTGHKAPVYALSFSVCGRFLASA  604 (711)
Q Consensus       533 ~~~~~~~~~~h~~~V~~v~~sp~~~~latg-s~Dg~I~iwD~--~~~~~-----v~~~~~h~~~I~~la~spdg~~Lasg  604 (711)
                      ....+..+..+....+.++|+|+++.|+.+ +.++.|.+||+  .+|..     +..+..+.+....++++++|++.++.
T Consensus       137 ~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~  216 (297)
T 3g4e_A          137 PDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVAC  216 (297)
T ss_dssp             TTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEE
T ss_pred             CCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence            322333334445567899999999877554 55788999997  45543     22223344678899999999888877


Q ss_pred             eCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEe-CCCCEEEEEeC
Q psy14440        605 GGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFS-RDGNILASSGQ  648 (711)
Q Consensus       605 s~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fs-pdg~~Lasgs~  648 (711)
                      ..++.|.+||..+|+.+..+..+...+++++|. ++++.|+.++.
T Consensus       217 ~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          217 YNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             ETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             cCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            778899999999999999998887889999998 78887766554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.51  E-value=1.7e-12  Score=153.38  Aligned_cols=196  Identities=15%  Similarity=0.125  Sum_probs=141.7

Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCe--------
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQD-----NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRM--------  525 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~D-----g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~--------  525 (711)
                      |...+.+++|||||++|+.++.+     .+|++||+.+++.+.... +...+.+++|+|+ +.|+.++.++.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            33468899999999999877654     469999999988765321 2222357899999 99998887654        


Q ss_pred             ------EEEEECCCCce--eEEeec--CCCCeeEEEEcCCCCEEEEEEcCC-----cEEEEECCCC--cEEEEeeCCCCC
Q psy14440        526 ------ARLWATDSYHP--LRLFVG--HYSDVDCVQFHPNSNYVATGSSDR-----TIRLWDCVTG--SHVRLLTGHKAP  588 (711)
Q Consensus       526 ------i~lwd~~~~~~--~~~~~~--h~~~V~~v~~sp~~~~latgs~Dg-----~I~iwD~~~~--~~v~~~~~h~~~  588 (711)
                            |++|++.++..  ...+..  +...+..+.|+|+|++|+..+.++     .|++||+.++  ++.+.+..+...
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                  88999987652  233333  233588999999999999887654     7999999887  424555555555


Q ss_pred             eEEEEEecCCCEEEEEeCC----CcEEEEECCCC--eEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        589 VYALSFSVCGRFLASAGGD----GNVHMWDLSNG--HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       589 I~~la~spdg~~Lasgs~D----g~I~iwDl~sg--~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      +... ++++|+.|+..+.+    +.|.+||+.++  +....+..+...+.+++|+ ++.++++...||..+||.+.
T Consensus       319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            5555 35889988877653    45999999884  4444455555667788888 66788888899988888664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.50  E-value=3.4e-13  Score=145.79  Aligned_cols=172  Identities=16%  Similarity=0.084  Sum_probs=140.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-----------EEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR-----------CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA  530 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~-----------~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd  530 (711)
                      .++.+++++...++++|+.++ +++|++...+           ..... .+.. |..++|  ++.+++++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            689999999999999999986 6779875332           11222 3566 999999  88999999 889999999


Q ss_pred             CCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy14440        531 TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNV  610 (711)
Q Consensus       531 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I  610 (711)
                      +.+.........|...+.++.+.+.  .+++++.||+|.+||+.++....    +...|+|++|||+|  ++.|..||+|
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i  184 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF  184 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence            9887766667778888888887654  38889999999999999887654    44689999999999  6789999999


Q ss_pred             EEEECCCCeE--EEEe------e---CCCCCEEEEEEeCCCCEEEEEe
Q psy14440        611 HMWDLSNGHL--LTLL------T---GHTDVVRALCFSRDGNILASSG  647 (711)
Q Consensus       611 ~iwDl~sg~~--i~~l------~---~h~~~V~sl~fspdg~~Lasgs  647 (711)
                      ++|+...+..  .+++      .   +|...|.+|+|.+++.+|++-+
T Consensus       185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            9999988776  5566      2   4778899999999999988743

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.47  E-value=7.8e-13  Score=142.94  Aligned_cols=182  Identities=12%  Similarity=0.046  Sum_probs=140.5

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEE
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSF  468 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~f  468 (711)
                      .++.+++++...++++|+.++ +++|++....  ......        ..+          .+.. ....+.+ |+.++|
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~--~~~~~~--------~~~----------~~~~-~~~~lp~-V~~l~f   95 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLR--DHITSD--------STP----------LTFK-WEKEIPD-VIFVCF   95 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHH--HHHHSS--------SCC----------CCCS-EEEECTT-EEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhh--hhhccc--------ccc----------ccce-EEeeCCC-eeEEEE
Confidence            588999999999999999986 6669874321  000000        000          1111 1223566 999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCee
Q psy14440        469 SPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVD  548 (711)
Q Consensus       469 spdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~  548 (711)
                        |+++|+++ .++.|++||+.+.........|...+.++.+.+.  .+++++.||.+.+||+.++....    +...|+
T Consensus        96 --d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs  166 (388)
T 1xip_A           96 --HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVT  166 (388)
T ss_dssp             --ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEE
T ss_pred             --CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCce
Confidence              89999999 8899999999877766667778888998888754  38899999999999999877643    346899


Q ss_pred             EEEEcCCCCEEEEEEcCCcEEEEECCCCcE--EEEe------e---CCCCCeEEEEEecCCCEEEEE
Q psy14440        549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSH--VRLL------T---GHKAPVYALSFSVCGRFLASA  604 (711)
Q Consensus       549 ~v~~sp~~~~latgs~Dg~I~iwD~~~~~~--v~~~------~---~h~~~I~~la~spdg~~Lasg  604 (711)
                      |++|+|+|  ++.|..||+|++|+...+..  .+++      .   +|...|.+|+|.+++.++++-
T Consensus       167 ~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          167 SFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            99999999  78899999999999887775  5566      2   478899999999999998874

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.46  E-value=5.5e-11  Score=125.96  Aligned_cols=222  Identities=13%  Similarity=0.025  Sum_probs=154.8

Q ss_pred             ceEEEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEE
Q psy14440        389 QVTCAEISED-VSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLS  467 (711)
Q Consensus       389 ~V~~l~fs~d-g~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~  467 (711)
                      -..+.+|+++ +.+++++..++.|.+|+..+++..                                .+. +...+.+++
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~--------------------------------~~~-~~~~v~~i~   96 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT--------------------------------VHA-LPFMGSALA   96 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--------------------------------EEE-CSSCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE--------------------------------EEE-CCCcceEEE
Confidence            4567889997 456667777788888887543221                                111 234689999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec----CCCCEEEEEEcCCCCEEEEEEC------CCeEEEEECCCCcee
Q psy14440        468 FSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG----HGHPVWDIKFSPHGYYFASAGH------DRMARLWATDSYHPL  537 (711)
Q Consensus       468 fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~----h~~~V~~v~~sp~g~~l~sgs~------Dg~i~lwd~~~~~~~  537 (711)
                      |+++|++++++ .+ .|.+||..+++.......    ....+.+++++++|+++++...      .+.|..++  +++. 
T Consensus        97 ~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-  171 (326)
T 2ghs_A           97 KISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-  171 (326)
T ss_dssp             EEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-
T ss_pred             EeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-
Confidence            99999876654 44 499999988775443321    1245889999999987665542      24555555  4443 


Q ss_pred             EEeecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECC--CC-c-----EEEEeeCCCCCeEEEEEecCCCEEEEEeCCC
Q psy14440        538 RLFVGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCV--TG-S-----HVRLLTGHKAPVYALSFSVCGRFLASAGGDG  608 (711)
Q Consensus       538 ~~~~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~--~~-~-----~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg  608 (711)
                      ..+..+......++|+++++.++.+. .++.|.+||+.  +| .     .+..+.........++++++|+++++...++
T Consensus       172 ~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~  251 (326)
T 2ghs_A          172 TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG  251 (326)
T ss_dssp             EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT
T ss_pred             EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCC
Confidence            33333344578999999998776554 56899999986  56 3     1223333445678899999998877776778


Q ss_pred             cEEEEECCCCeEEEEeeCCCCCEEEEEEe-CCCCEEEEEeCC
Q psy14440        609 NVHMWDLSNGHLLTLLTGHTDVVRALCFS-RDGNILASSGQD  649 (711)
Q Consensus       609 ~I~iwDl~sg~~i~~l~~h~~~V~sl~fs-pdg~~Lasgs~D  649 (711)
                      .|.+||. +++.+..+..+...+++++|+ ++++.|+.++..
T Consensus       252 ~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          252 AVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            9999998 688888888777789999998 888877655543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.45  E-value=9.6e-12  Score=145.77  Aligned_cols=237  Identities=13%  Similarity=0.073  Sum_probs=160.4

Q ss_pred             CCCceEEEEECCCCCEEEEEeC-----CCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEE-eecc
Q psy14440        386 ARQQVTCAEISEDVSILAVGFS-----ESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRT-LVGH  459 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~-----dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-l~~h  459 (711)
                      |...|..++|||||++||.+..     ...|++||+.+++                               .... +.+ 
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-------------------------------~~~~~~~~-  174 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-------------------------------PLETPLKD-  174 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-------------------------------EEEEEEEE-
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC-------------------------------CCccccCC-
Confidence            3456888899999999986442     2456777765443                               2211 111 


Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCe-------------EEEEECCCCeE--EEEEec---CCCCEEEEEEcCCCCEEEEEE
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNT-------------IRLWSLLLWRC--LVVYKG---HGHPVWDIKFSPHGYYFASAG  521 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~-------------V~iwdl~t~~~--~~~~~~---h~~~V~~v~~sp~g~~l~sgs  521 (711)
                       ....+++|+ ||+.|+.++.+..             |++|++.+...  ...+..   |...+.++.|+++|++++...
T Consensus       175 -~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~  252 (693)
T 3iuj_A          175 -VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISA  252 (693)
T ss_dssp             -EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred             -ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence             112467899 9999998887743             99999976542  333432   445678899999999886554


Q ss_pred             C----CCeEEEEECCCCc-eeEEeecCCCCeeEEEEcCCCCEEEEEEc-C---CcEEEEECCCCcE--EEEeeCCCCCeE
Q psy14440        522 H----DRMARLWATDSYH-PLRLFVGHYSDVDCVQFHPNSNYVATGSS-D---RTIRLWDCVTGSH--VRLLTGHKAPVY  590 (711)
Q Consensus       522 ~----Dg~i~lwd~~~~~-~~~~~~~h~~~V~~v~~sp~~~~latgs~-D---g~I~iwD~~~~~~--v~~~~~h~~~I~  590 (711)
                      .    +..+++||++++. ..+.+..+....... |++++..|+..+. +   +.|.++|+.++..  .+.+..|...+.
T Consensus       253 ~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  331 (693)
T 3iuj_A          253 ANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL  331 (693)
T ss_dssp             ESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred             ccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE
Confidence            2    3589999998763 455566666655555 5666666655443 3   5799999988754  355666766665


Q ss_pred             EEEEecCCCEEEEEeCCC---cEEEEECCCCeEEEEee-CCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEeCCCC
Q psy14440        591 ALSFSVCGRFLASAGGDG---NVHMWDLSNGHLLTLLT-GHTDVVRALCFSRDGNILASSGQD----CSVKLWDFAKL  660 (711)
Q Consensus       591 ~la~spdg~~Lasgs~Dg---~I~iwDl~sg~~i~~l~-~h~~~V~sl~fspdg~~Lasgs~D----g~V~iWdl~~~  660 (711)
                        .|++++++|+....++   .|++||+..+. ...+. ...+.+..++++++++.|+....+    ++|..||+.+.
T Consensus       332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          332 --TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             --EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             --EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence              8999999888766543   78999987544 44443 344567788888888766655444    78999998654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.45  E-value=2.6e-10  Score=117.47  Aligned_cols=218  Identities=10%  Similarity=0.001  Sum_probs=159.2

Q ss_pred             ccCCcEEEEEecCCCeeEE-EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-EecCCCCEEEEEEcCC
Q psy14440        436 ECDDILVRIMDERNAETTR-TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV-YKGHGHPVWDIKFSPH  513 (711)
Q Consensus       436 ~~~d~~i~i~d~~~~~~~~-~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~-~~~h~~~V~~v~~sp~  513 (711)
                      ...++.|.+++.. ++... .+..+...+.+++++++|+.+++...++.|..||.. ++.... .......+.++++.++
T Consensus        37 ~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~  114 (300)
T 2qc5_A           37 QHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN  114 (300)
T ss_dssp             ETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST
T ss_pred             cCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCC
Confidence            3346778888876 44433 222344679999999999877777668899999988 554322 2223467899999999


Q ss_pred             CCEEEEEECCCeEEEEECCCCceeEE-eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-eeCCCCCeEE
Q psy14440        514 GYYFASAGHDRMARLWATDSYHPLRL-FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRL-LTGHKAPVYA  591 (711)
Q Consensus       514 g~~l~sgs~Dg~i~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~-~~~h~~~I~~  591 (711)
                      |+++++...++.|..|+.+ ++.... +......+.+++++++++.+++...++.|..||. +++.... ...+...+.+
T Consensus       115 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~  192 (300)
T 2qc5_A          115 GDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVG  192 (300)
T ss_dssp             TCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred             CCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcce
Confidence            9888887778899999987 554432 2334567899999999996666666788999998 6654432 2234567899


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEECCCCeEEEE-eeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        592 LSFSVCGRFLASAGGDGNVHMWDLSNGHLLTL-LTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       592 la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~-l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      ++++++|+++++....+.|.+||. +++.... +..+...+.+++++++|+++++...++.|..||..
T Consensus       193 i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          193 ITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             EEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             EEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            999999987777767788999998 5654433 33445678999999999977777677899999873

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.45  E-value=3.8e-11  Score=125.09  Aligned_cols=197  Identities=12%  Similarity=0.075  Sum_probs=141.6

Q ss_pred             cccCCEEEEEEcCCCCEEEE-------EeCCCeEEEEECCCCeEEEEEe----cCCCCEEEEEEcCC-CCEEEEEECCCe
Q psy14440        458 GHEGPVRKLSFSPDRSLLLS-------CSQDNTIRLWSLLLWRCLVVYK----GHGHPVWDIKFSPH-GYYFASAGHDRM  525 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s-------~s~Dg~V~iwdl~t~~~~~~~~----~h~~~V~~v~~sp~-g~~l~sgs~Dg~  525 (711)
                      ..-....+++|+++++.+++       ++.++.|.+||..+++......    ++...+.+++++++ |++++ ++..+.
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~   93 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLG   93 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTE
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCC
Confidence            33445689999999987777       5778999999988777543322    24467899999999 65444 444557


Q ss_pred             EEEEECCCCceeEE-eec----CCCCeeEEEEcCCCCEEEEEEcC---------------CcEEEEECCCCcEEEEeeCC
Q psy14440        526 ARLWATDSYHPLRL-FVG----HYSDVDCVQFHPNSNYVATGSSD---------------RTIRLWDCVTGSHVRLLTGH  585 (711)
Q Consensus       526 i~lwd~~~~~~~~~-~~~----h~~~V~~v~~sp~~~~latgs~D---------------g~I~iwD~~~~~~v~~~~~h  585 (711)
                      |.+||.+ ++.... ...    ....+.+++++++|+++++...+               +.|..||.. ++.... ..+
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~~  170 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTA  170 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEE
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-ccC
Confidence            9999998 654433 221    12358899999999888777655               567777765 554433 334


Q ss_pred             CCCeEEEEEe----cCCCEEEEE-eCCCcEEEEECC-CCe-----EEEEeeCCC-CCEEEEEEeCCCCEEEEEeCCCcEE
Q psy14440        586 KAPVYALSFS----VCGRFLASA-GGDGNVHMWDLS-NGH-----LLTLLTGHT-DVVRALCFSRDGNILASSGQDCSVK  653 (711)
Q Consensus       586 ~~~I~~la~s----pdg~~Lasg-s~Dg~I~iwDl~-sg~-----~i~~l~~h~-~~V~sl~fspdg~~Lasgs~Dg~V~  653 (711)
                      ......++|+    ++|+.|+.+ ..++.|.+||+. +++     ....+.++. ..+..++++++|+++++...++.|.
T Consensus       171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~  250 (314)
T 1pjx_A          171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence            4557899999    999766555 467899999986 554     233344444 6688999999999998888889999


Q ss_pred             EEeCC
Q psy14440        654 LWDFA  658 (711)
Q Consensus       654 iWdl~  658 (711)
                      +||..
T Consensus       251 ~~d~~  255 (314)
T 1pjx_A          251 VFGPD  255 (314)
T ss_dssp             EECTT
T ss_pred             EEcCC
Confidence            99975

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.44  E-value=2.2e-11  Score=127.54  Aligned_cols=234  Identities=12%  Similarity=0.093  Sum_probs=162.5

Q ss_pred             EEEEecCCCceEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        380 CYTLLNARQQVTCAEISEDVS-ILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~-~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      +..+........+..|+++|+ +++++..++.|..|+..+ .                                ...+..
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~--------------------------------~~~~~~   83 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T--------------------------------VDVLLD   83 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C--------------------------------EEEEEE
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C--------------------------------EEEEeC
Confidence            344555666778999999998 677777788888887632 1                                122333


Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC----CCCEEEEEEcCCCCEEEE----EEC--------
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH----GHPVWDIKFSPHGYYFAS----AGH--------  522 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h----~~~V~~v~~sp~g~~l~s----gs~--------  522 (711)
                      +.+.+.+++++++|+++++...++.|.+|+.. ++........    ...+.+++++++|+++++    |+.        
T Consensus        84 ~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~  162 (305)
T 3dr2_A           84 ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPA  162 (305)
T ss_dssp             SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred             CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccc
Confidence            55678999999999866665566889999986 5533322111    234678999999998876    332        


Q ss_pred             -----CCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcC------CcEEEEECCCCcE--EEEe-eCCCCC
Q psy14440        523 -----DRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD------RTIRLWDCVTGSH--VRLL-TGHKAP  588 (711)
Q Consensus       523 -----Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D------g~I~iwD~~~~~~--v~~~-~~h~~~  588 (711)
                           .+.|..||..+++.....  .......++|+|+++.|+++...      +.|.+||+..+..  .+.+ ....+.
T Consensus       163 ~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~  240 (305)
T 3dr2_A          163 DPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGL  240 (305)
T ss_dssp             CCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSC
T ss_pred             ccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCC
Confidence                 256777777666654433  44567889999999988887765      6899999876541  1122 122345


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q psy14440        589 VYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVK  653 (711)
Q Consensus       589 I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~  653 (711)
                      ...++++++|++. +++.+ .|.+||. +|+.+..+..+. .+.+++|+++++.|+.++.++..+
T Consensus       241 pdgi~~d~~G~lw-v~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          241 PDGFCVDRGGWLW-SSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             CCSEEECTTSCEE-ECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             CCeEEECCCCCEE-EecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            5678999999954 44444 4999997 678887777655 588999999999888888764433

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.43  E-value=2.6e-10  Score=123.33  Aligned_cols=217  Identities=9%  Similarity=-0.081  Sum_probs=148.2

Q ss_pred             CcEEEEEecCCCeeEEEeecc-------cCCEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEE-EecCCCCEEEE
Q psy14440        439 DILVRIMDERNAETTRTLVGH-------EGPVRKLSFSPDRSLLLSCSQ--DNTIRLWSLLLWRCLVV-YKGHGHPVWDI  508 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h-------~~~V~~l~fspdg~~L~s~s~--Dg~V~iwdl~t~~~~~~-~~~h~~~V~~v  508 (711)
                      ++.+.++|..+.+.+..+...       ...-..+.|+|||++|++++.  +++|.++| .+++.+.. +... .   ++
T Consensus        96 ~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~  170 (373)
T 2mad_H           96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CY  170 (373)
T ss_pred             CCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eE
Confidence            456677777666665554321       123458999999999999874  47899999 99988777 5432 2   23


Q ss_pred             EEcCCC-CEEEEEECCCeEEEEECCCCceeEEee-----cCCCC-eeEEEEcCCCCEEEEEEcCCcEEEEECCCCc--EE
Q psy14440        509 KFSPHG-YYFASAGHDRMARLWATDSYHPLRLFV-----GHYSD-VDCVQFHPNSNYVATGSSDRTIRLWDCVTGS--HV  579 (711)
Q Consensus       509 ~~sp~g-~~l~sgs~Dg~i~lwd~~~~~~~~~~~-----~h~~~-V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~--~v  579 (711)
                      .+.+.+ +.+++.+.||.+.+||. +++......     ..... .....+.+++..++..+.++.|.+.|+.++.  .+
T Consensus       171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~  249 (373)
T 2mad_H          171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNK  249 (373)
T ss_pred             EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEe
Confidence            444544 46677778999999999 777663321     11111 1234556666555555578899999987653  22


Q ss_pred             EEeeC----------CCCCeEEEEEecCCCEEEEEeC----------CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCC
Q psy14440        580 RLLTG----------HKAPVYALSFSVCGRFLASAGG----------DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRD  639 (711)
Q Consensus       580 ~~~~~----------h~~~I~~la~spdg~~Lasgs~----------Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspd  639 (711)
                      ..+.-          .......++++++++.|+++..          ++.|.++|+.+++.+..+.. ....++++|++|
T Consensus       250 ~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~D  328 (373)
T 2mad_H          250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQD  328 (373)
T ss_pred             eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCC
Confidence            22211          1123445789999998887653          35799999999999998864 335789999999


Q ss_pred             CC-EEEEEe-CCCcEEEEeCCCCCC
Q psy14440        640 GN-ILASSG-QDCSVKLWDFAKLSD  662 (711)
Q Consensus       640 g~-~Lasgs-~Dg~V~iWdl~~~~~  662 (711)
                      |+ .++++. .+++|.|||+.+.+.
T Consensus       329 g~~~l~v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          329 GGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             CCeEEEEEcCCCCeEEEEECCCCCE
Confidence            99 788777 589999999987543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.41  E-value=3.7e-10  Score=123.66  Aligned_cols=195  Identities=13%  Similarity=0.109  Sum_probs=144.1

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCC--eEEEEECCCCceeE
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDR--MARLWATDSYHPLR  538 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg--~i~lwd~~~~~~~~  538 (711)
                      ....+++|+++++++++...++.|++||..++........... .. ++|+++++.++++..++  .|.+|+...+...+
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            4678999999998777777789999999998887766655333 33 99999999988888766  78999887665544


Q ss_pred             Ee----ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE----eeCCCCCe--EEEEEecC-CCEEEEEeCC
Q psy14440        539 LF----VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRL----LTGHKAPV--YALSFSVC-GRFLASAGGD  607 (711)
Q Consensus       539 ~~----~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~----~~~h~~~I--~~la~spd-g~~Lasgs~D  607 (711)
                      .+    ......+.+++++|++..|+++..++.|+.||..++.....    ..++...-  ..++|+|+ +.++++...+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            44    22456788999999555666677788999999987764333    22332222  39999995 5556666678


Q ss_pred             CcEEEEECCCCeEEEEeeCCC---------------CCEEEEEEeCCCCEEEEEe-CCCcEEEEeCCC
Q psy14440        608 GNVHMWDLSNGHLLTLLTGHT---------------DVVRALCFSRDGNILASSG-QDCSVKLWDFAK  659 (711)
Q Consensus       608 g~I~iwDl~sg~~i~~l~~h~---------------~~V~sl~fspdg~~Lasgs-~Dg~V~iWdl~~  659 (711)
                      ++|+.||....  +..+.++.               .....++|+++|+++++-+ .+++|+.||+..
T Consensus       289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~  354 (409)
T 3hrp_A          289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD  354 (409)
T ss_dssp             TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred             CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence            89999997543  33333332               3478999999999888877 889999999754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.40  E-value=2.9e-10  Score=118.52  Aligned_cols=219  Identities=11%  Similarity=0.100  Sum_probs=148.2

Q ss_pred             ccCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee
Q psy14440        459 HEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       459 h~~~V~~l~fspdg~-~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      +..-..+..|++++. .+++...++.|..||..++.. ..+. ....+.+++++++|+++++ . ++.|.+||.++++..
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence            344566889999655 555666788999999987765 3333 4567999999999995554 4 578999999877644


Q ss_pred             EEeec----CCCCeeEEEEcCCCCEEEEEEcC---------CcEEEEECCC-CcEEEEeeCCCCCeEEEEEecCCCEEEE
Q psy14440        538 RLFVG----HYSDVDCVQFHPNSNYVATGSSD---------RTIRLWDCVT-GSHVRLLTGHKAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       538 ~~~~~----h~~~V~~v~~sp~~~~latgs~D---------g~I~iwD~~~-~~~v~~~~~h~~~I~~la~spdg~~Las  603 (711)
                      .....    ....+..++++++|+++++...+         ....||.+.. ++. ..+..+....+.++|++||+.|+.
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~lyv  165 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFYY  165 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEEE
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCEEEE
Confidence            33322    12347889999999976655332         2345555443 333 333334455789999999997755


Q ss_pred             -EeCCCcEEEEEC--CCCeE-----EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcccccccccc
Q psy14440        604 -AGGDGNVHMWDL--SNGHL-----LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSA  675 (711)
Q Consensus       604 -gs~Dg~I~iwDl--~sg~~-----i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~  675 (711)
                       .+.++.|.+||+  .+|..     +..+..+.+....++++++|++.++...++.|.+||..+.               
T Consensus       166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---------------  230 (297)
T 3g4e_A          166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---------------  230 (297)
T ss_dssp             EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---------------
T ss_pred             ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---------------
Confidence             455789999987  45643     2233334467889999999998888888889999997532               


Q ss_pred             ccccccccceeeecccCCcceEEEEEc-cCC
Q psy14440        676 DIKNSSLAYLVRSYKTKASPLLHLIFS-RRN  705 (711)
Q Consensus       676 ~~~~~~~~~~l~~~~t~~~pV~~v~Fs-~~n  705 (711)
                              .++..+......+.+++|+ +++
T Consensus       231 --------~~~~~i~~p~~~~t~~~f~g~d~  253 (297)
T 3g4e_A          231 --------KRLQTVKLPVDKTTSCCFGGKNY  253 (297)
T ss_dssp             --------CEEEEEECSSSBEEEEEEESGGG
T ss_pred             --------eEEEEEECCCCCceEEEEeCCCC
Confidence                    2333444444567788887 543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.37  E-value=1.8e-10  Score=124.04  Aligned_cols=263  Identities=12%  Similarity=0.004  Sum_probs=176.6

Q ss_pred             EECCCCCEEEEEeC-----CCeEEEEeCCCCceee---------eccCcccccccccc----------CCcEEEEEecCC
Q psy14440        394 EISEDVSILAVGFS-----ESYIKLWSLVPQKLKA---------MKSSDQLQDIEMEC----------DDILVRIMDERN  449 (711)
Q Consensus       394 ~fs~dg~~LatG~~-----dg~I~vWdl~~~~~~~---------~~~~~~~~~l~~~~----------~d~~i~i~d~~~  449 (711)
                      ...||++.+.+...     ++.|.+.|..+.++..         +..+++...+.+..          .++.|.+||..+
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t  118 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT  118 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence            34577776666654     4678888877655332         33345555554443          356788899888


Q ss_pred             CeeEEEeeccc-------CCEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEE
Q psy14440        450 AETTRTLVGHE-------GPVRKLSFSPDRSLLLSCSQ--DNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASA  520 (711)
Q Consensus       450 ~~~~~~l~~h~-------~~V~~l~fspdg~~L~s~s~--Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sg  520 (711)
                      .+.+..+.-..       ..-..+.|++||++|+++..  +++|.++|+.+++.+..+....  . ...+....+.|++.
T Consensus       119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~  195 (386)
T 3sjl_D          119 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMH  195 (386)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEE
T ss_pred             CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEE
Confidence            88877764221       13457999999999998874  6899999999999999886422  1 12233345678888


Q ss_pred             ECCCeEEEEECCC-CceeEEeecCC----CCe-eEEEEc-CCCCEEEEEEcCCcEEEEECCCCcE--EEEee--------
Q psy14440        521 GHDRMARLWATDS-YHPLRLFVGHY----SDV-DCVQFH-PNSNYVATGSSDRTIRLWDCVTGSH--VRLLT--------  583 (711)
Q Consensus       521 s~Dg~i~lwd~~~-~~~~~~~~~h~----~~V-~~v~~s-p~~~~latgs~Dg~I~iwD~~~~~~--v~~~~--------  583 (711)
                      +.||++.+.++.+ ++.......+.    ..+ ....|. ++|++++ .+.+|+|.+.|+.++..  +..+.        
T Consensus       196 ~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~  274 (386)
T 3sjl_D          196 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  274 (386)
T ss_dssp             ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccc
Confidence            8999999999876 55432221111    111 124564 5665544 56689999999976642  22221        


Q ss_pred             -C-CCCCeEEEEEecCCCEEEEEeC----------CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCC-EEEEE-eCC
Q psy14440        584 -G-HKAPVYALSFSVCGRFLASAGG----------DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGN-ILASS-GQD  649 (711)
Q Consensus       584 -~-h~~~I~~la~spdg~~Lasgs~----------Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~-~Lasg-s~D  649 (711)
                       + ..+....++++++++.++....          .+.|.++|+.+++.+..+..- ..+++|++++|++ +|+++ ..+
T Consensus       275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~  353 (386)
T 3sjl_D          275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGD  353 (386)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTT
T ss_pred             ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCC
Confidence             0 1223445788999998887643          257999999999999888632 3678999999997 66664 458


Q ss_pred             CcEEEEeCCCCC
Q psy14440        650 CSVKLWDFAKLS  661 (711)
Q Consensus       650 g~V~iWdl~~~~  661 (711)
                      +.|.++|..+.+
T Consensus       354 ~~VsViD~~t~k  365 (386)
T 3sjl_D          354 KTLYIHDAESGE  365 (386)
T ss_dssp             TEEEEEETTTCC
T ss_pred             CeEEEEECCCCc
Confidence            999999987643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.35  E-value=6.6e-11  Score=126.25  Aligned_cols=244  Identities=9%  Similarity=0.006  Sum_probs=164.5

Q ss_pred             CceEEEEECCCCCEEEEEe--CCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEE
Q psy14440        388 QQVTCAEISEDVSILAVGF--SESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRK  465 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~--~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~  465 (711)
                      .....++++++|+++++..  .++.++||.+.+.++...                     -....    ...+|...+.+
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~---------------------p~~~~----~~~~~~~~p~g   71 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPF---------------------PPQSG----NAIITFDTVLG   71 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEES---------------------CCCCS----SCCCCCSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecC---------------------CCccc----CcccceeEeeE
Confidence            6899999999999998864  234366666532222110                     00000    01246678999


Q ss_pred             EEEcCCCCEEEEEeC-----CCeEEEEECCCCeEEEEEecC------CCCEEEEEEcCCC-CEEEEEE---CCCeEEEEE
Q psy14440        466 LSFSPDRSLLLSCSQ-----DNTIRLWSLLLWRCLVVYKGH------GHPVWDIKFSPHG-YYFASAG---HDRMARLWA  530 (711)
Q Consensus       466 l~fspdg~~L~s~s~-----Dg~V~iwdl~t~~~~~~~~~h------~~~V~~v~~sp~g-~~l~sgs---~Dg~i~lwd  530 (711)
                      ++++++++++++-+.     ++.|.+||+.+++.+..+...      ...+.++++++++ ..+++.+   .++.|.+||
T Consensus        72 v~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d  151 (343)
T 2qe8_A           72 IKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVD  151 (343)
T ss_dssp             EEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEE
T ss_pred             EEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEE
Confidence            999999876555433     578999999999987777532      2356889999754 4445555   678999999


Q ss_pred             CCCCceeEEeecCC-----------------------------CCeeEEEEcCCCCEEEEEEcCC-cEEEEECC---CCc
Q psy14440        531 TDSYHPLRLFVGHY-----------------------------SDVDCVQFHPNSNYVATGSSDR-TIRLWDCV---TGS  577 (711)
Q Consensus       531 ~~~~~~~~~~~~h~-----------------------------~~V~~v~~sp~~~~latgs~Dg-~I~iwD~~---~~~  577 (711)
                      ..+++..+.+.+|.                             ..+..|+|+|+++.|+++..++ .|..++..   .+.
T Consensus       152 ~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~  231 (343)
T 2qe8_A          152 LQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQ  231 (343)
T ss_dssp             TTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTT
T ss_pred             CCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCC
Confidence            99887766654421                             2357899999999988887766 44444421   111


Q ss_pred             -----EEE--EeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC-CCCCEEEEEEeCCCCEEEEEeCC
Q psy14440        578 -----HVR--LLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG-HTDVVRALCFSRDGNILASSGQD  649 (711)
Q Consensus       578 -----~v~--~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~-h~~~V~sl~fspdg~~Lasgs~D  649 (711)
                           ...  ...++.+....++++++|+++++...++.|.+||..+|+....... +...+.+++|.++|+++++.+..
T Consensus       232 ~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          232 LTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             CCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             CChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence                 000  1123444567799999999999988899999999866775443332 24568999999999988887765


Q ss_pred             CcEEEEe
Q psy14440        650 CSVKLWD  656 (711)
Q Consensus       650 g~V~iWd  656 (711)
                      +.+.+|+
T Consensus       312 ~~~~~f~  318 (343)
T 2qe8_A          312 HHSAPLN  318 (343)
T ss_dssp             GGSGGGB
T ss_pred             ccccccc
Confidence            5554443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.33  E-value=1.6e-09  Score=114.63  Aligned_cols=189  Identities=12%  Similarity=-0.032  Sum_probs=133.3

Q ss_pred             CEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEe
Q psy14440        462 PVRKLSFSPDRS-LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF  540 (711)
Q Consensus       462 ~V~~l~fspdg~-~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~  540 (711)
                      -..+..|++++. .+++...++.|.+||..+++.. .+. ....+.+++|+++|+++++. . ..|.+||.++++.....
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence            356789999755 5556667889999999887653 333 35679999999999776654 4 45999999887654332


Q ss_pred             ec----CCCCeeEEEEcCCCCEEEEEEc------CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEE-eCCCc
Q psy14440        541 VG----HYSDVDCVQFHPNSNYVATGSS------DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASA-GGDGN  609 (711)
Q Consensus       541 ~~----h~~~V~~v~~sp~~~~latgs~------Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasg-s~Dg~  609 (711)
                      ..    ....+.+++++++|+++++...      .+.|..+|  +++.. .+..+....+.++|+++|+.|+.+ +.++.
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            21    1235889999999997665543      24566666  55543 333334457899999999877655 45689


Q ss_pred             EEEEECC--CC-e-----EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        610 VHMWDLS--NG-H-----LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       610 I~iwDl~--sg-~-----~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      |.+||+.  +| +     .+..+....+.+.+++++++|+++++...++.|.+||.
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            9999986  56 3     23334334456789999999998887777789999986

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.32  E-value=3.2e-09  Score=114.76  Aligned_cols=208  Identities=9%  Similarity=-0.003  Sum_probs=138.2

Q ss_pred             EEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeEEEEEecC-------CCCEE
Q psy14440        444 IMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCS----------QDNTIRLWSLLLWRCLVVYKGH-------GHPVW  506 (711)
Q Consensus       444 i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s----------~Dg~V~iwdl~t~~~~~~~~~h-------~~~V~  506 (711)
                      ++|..+++.+..+.....+  .++++|||++|+++.          .++.|.+||..+++.+..+...       ...-.
T Consensus        51 v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~  128 (373)
T 2mad_H           51 VLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW  128 (373)
T ss_pred             EEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc
Confidence            3333444444455443444  999999999999886          3678999999988887766532       12345


Q ss_pred             EEEEcCCCCEEEEEEC--CCeEEEEECCCCceeEE-eecCCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEe
Q psy14440        507 DIKFSPHGYYFASAGH--DRMARLWATDSYHPLRL-FVGHYSDVDCVQFHPNS-NYVATGSSDRTIRLWDCVTGSHVRLL  582 (711)
Q Consensus       507 ~v~~sp~g~~l~sgs~--Dg~i~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~-~~latgs~Dg~I~iwD~~~~~~v~~~  582 (711)
                      .+.|+|+|+++++++.  ++.|.++| .+++.+.. +...    .|+.+.+++ +.+++.+.||++.+||. +++.+...
T Consensus       129 ~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~  202 (373)
T 2mad_H          129 MNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAG  202 (373)
T ss_pred             ceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEE
Confidence            7999999999998874  57899999 99888776 5321    235555654 45566778999999999 88776332


Q ss_pred             e-----CCCCC-eEEEEEecCCCEEEEEeCCCcEEEEECCCCe--EEEEeeCC----------CCCEEEEEEeCCCCEEE
Q psy14440        583 T-----GHKAP-VYALSFSVCGRFLASAGGDGNVHMWDLSNGH--LLTLLTGH----------TDVVRALCFSRDGNILA  644 (711)
Q Consensus       583 ~-----~h~~~-I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~--~i~~l~~h----------~~~V~sl~fspdg~~La  644 (711)
                      .     ....+ .....+.+++..++..+..+.|.+.|+.++.  .+..+...          ......++++++++.|+
T Consensus       203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly  282 (373)
T 2mad_H          203 LVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             eccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence            2     11122 2234566766555545577899999997653  33333211          12244578899888777


Q ss_pred             EEeC----------CCcEEEEeCCC
Q psy14440        645 SSGQ----------DCSVKLWDFAK  659 (711)
Q Consensus       645 sgs~----------Dg~V~iWdl~~  659 (711)
                      ++..          ++.|.++|+.+
T Consensus       283 V~~~~~~~~~~~~~~~~V~VID~~t  307 (373)
T 2mad_H          283 LLTSEQSAWKLHAAAKEVTSVTGLV  307 (373)
T ss_pred             EEeccCCcccccCCCCeEEEEECCC
Confidence            7643          35788888765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.30  E-value=3e-10  Score=118.83  Aligned_cols=199  Identities=14%  Similarity=0.068  Sum_probs=139.3

Q ss_pred             eEEEeecccCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q psy14440        452 TTRTLVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA  530 (711)
Q Consensus       452 ~~~~l~~h~~~V~~l~fspdg~-~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd  530 (711)
                      .+..+..+.....+..|+++++ .++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence            3445555666788999999998 5666667889999998 444 345555677899999999998766665668899999


Q ss_pred             CCCCceeEEeecC-----CCCeeEEEEcCCCCEEEE----EEc-------------CCcEEEEECCCCcEEEEeeCCCCC
Q psy14440        531 TDSYHPLRLFVGH-----YSDVDCVQFHPNSNYVAT----GSS-------------DRTIRLWDCVTGSHVRLLTGHKAP  588 (711)
Q Consensus       531 ~~~~~~~~~~~~h-----~~~V~~v~~sp~~~~lat----gs~-------------Dg~I~iwD~~~~~~v~~~~~h~~~  588 (711)
                      .+ ++. ..+..+     ...+..++++++|+++++    |..             .+.|..||..+++.....  ....
T Consensus       114 ~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~  189 (305)
T 3dr2_A          114 AD-GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH  189 (305)
T ss_dssp             TT-SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred             CC-CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence            86 443 222211     234678999999998886    332             256888887777654443  4456


Q ss_pred             eEEEEEecCCCEEEEEeCC------CcEEEEECCCCeEE--EEe-eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        589 VYALSFSVCGRFLASAGGD------GNVHMWDLSNGHLL--TLL-TGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       589 I~~la~spdg~~Lasgs~D------g~I~iwDl~sg~~i--~~l-~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      .+.++|++||+.|+.+...      +.|.+||+..+...  ..+ ....+....++++++|++.++. .+ .|.+||..
T Consensus       190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~  266 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSD  266 (305)
T ss_dssp             EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECTT
T ss_pred             CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECCC
Confidence            7889999999988877665      78999998765421  111 1123445678999999955544 44 48888863

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.26  E-value=5.7e-10  Score=122.10  Aligned_cols=219  Identities=9%  Similarity=0.021  Sum_probs=145.5

Q ss_pred             EEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeEEEEEecC-------CC
Q psy14440        441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCS----------QDNTIRLWSLLLWRCLVVYKGH-------GH  503 (711)
Q Consensus       441 ~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s----------~Dg~V~iwdl~t~~~~~~~~~h-------~~  503 (711)
                      .|.++|..+.+.+.++..-..+  .+.++|||++|+++.          .++.|.++|..+++.+..+...       ..
T Consensus       100 ~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~  177 (426)
T 3c75_H          100 QQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGT  177 (426)
T ss_dssp             EEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred             eEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCC
Confidence            4445555666666666644556  899999999988886          3678999999999988877532       12


Q ss_pred             CEEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceeEEeecCCC-------CeeEEEEcCCCCEE---------------
Q psy14440        504 PVWDIKFSPHGYYFASAGH--DRMARLWATDSYHPLRLFVGHYS-------DVDCVQFHPNSNYV---------------  559 (711)
Q Consensus       504 ~V~~v~~sp~g~~l~sgs~--Dg~i~lwd~~~~~~~~~~~~h~~-------~V~~v~~sp~~~~l---------------  559 (711)
                      ....+.|+|+|++++++..  ++.|.++|+.+++.+..+.-...       .-..+.++++|+++               
T Consensus       178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~  257 (426)
T 3c75_H          178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTE  257 (426)
T ss_dssp             CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECC
T ss_pred             CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeee
Confidence            3456899999999998874  58999999999887766643110       00112333333333               


Q ss_pred             ----------------------EEEEcCCcEEEEECCCCcEE--EEeeC----------CCCCeEEEEEecCCCEEEEEe
Q psy14440        560 ----------------------ATGSSDRTIRLWDCVTGSHV--RLLTG----------HKAPVYALSFSVCGRFLASAG  605 (711)
Q Consensus       560 ----------------------atgs~Dg~I~iwD~~~~~~v--~~~~~----------h~~~I~~la~spdg~~Lasgs  605 (711)
                                            +..+..++|.+.|+..+...  ..+.-          .......++++++|+.++++.
T Consensus       258 ~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~  337 (426)
T 3c75_H          258 VFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLV  337 (426)
T ss_dssp             CCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEE
T ss_pred             eeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEe
Confidence                                  22233334444444322211  00000          001112368999988777764


Q ss_pred             C----------CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCC-EEEEEe-CCCcEEEEeCCCCCC
Q psy14440        606 G----------DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGN-ILASSG-QDCSVKLWDFAKLSD  662 (711)
Q Consensus       606 ~----------Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~-~Lasgs-~Dg~V~iWdl~~~~~  662 (711)
                      .          ++.|.++|+.+++.+.++... ...++++|++||+ +|+++. .+++|.|+|+.+.+.
T Consensus       338 ~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          338 DQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE  405 (426)
T ss_dssp             EECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             cccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence            2          357999999999999988642 2478999999999 888888 599999999987543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.24  E-value=1.3e-09  Score=117.30  Aligned_cols=242  Identities=13%  Similarity=0.074  Sum_probs=164.3

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEeCCCCceee------------------eccCcccccccccc--CCcE
Q psy14440        392 CAEISEDVSILAVGF----------SESYIKLWSLVPQKLKA------------------MKSSDQLQDIEMEC--DDIL  441 (711)
Q Consensus       392 ~l~fs~dg~~LatG~----------~dg~I~vWdl~~~~~~~------------------~~~~~~~~~l~~~~--~d~~  441 (711)
                      .+++||||++++++.          .++.|.+||..+.++..                  +..+.+...+.+..  .++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            399999999887765          36789999998876543                  22334555555544  2688


Q ss_pred             EEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEEecC----CCCEE-EEEEc-CCC
Q psy14440        442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL-WRCLVVYKGH----GHPVW-DIKFS-PHG  514 (711)
Q Consensus       442 i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t-~~~~~~~~~h----~~~V~-~v~~s-p~g  514 (711)
                      |.++|..+++.+.++....  + ...+....+.+++.+.||++.+.++.+ ++.......+    ..++. ...|. ++|
T Consensus       162 VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG  238 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG  238 (386)
T ss_dssp             EEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             EEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence            9999999999888875321  1 223333456777888899999999876 5543322111    12222 23554 567


Q ss_pred             CEEEEEECCCeEEEEECCCCce--eEEee---------c-CCCCeeEEEEcCCCCEEEEEEc----------CCcEEEEE
Q psy14440        515 YYFASAGHDRMARLWATDSYHP--LRLFV---------G-HYSDVDCVQFHPNSNYVATGSS----------DRTIRLWD  572 (711)
Q Consensus       515 ~~l~sgs~Dg~i~lwd~~~~~~--~~~~~---------~-h~~~V~~v~~sp~~~~latgs~----------Dg~I~iwD  572 (711)
                      +++ ..+.+|++++.|..+...  +..+.         + .......++++++++.++....          .++|.++|
T Consensus       239 ~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD  317 (386)
T 3sjl_D          239 RLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  317 (386)
T ss_dssp             EEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             cEE-EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence            444 466689999999976542  22221         0 1234456788999988887653          25799999


Q ss_pred             CCCCcEEEEeeCCCCCeEEEEEecCCC-EEEEE-eCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCC
Q psy14440        573 CVTGSHVRLLTGHKAPVYALSFSVCGR-FLASA-GGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRD  639 (711)
Q Consensus       573 ~~~~~~v~~~~~h~~~I~~la~spdg~-~Lasg-s~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspd  639 (711)
                      +.+++.++.+... ..+.+|++++||+ +|+++ ..++.|.++|..+++.++++..-. .-+.|.+++|
T Consensus       318 ~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~-~p~~l~~s~d  384 (386)
T 3sjl_D          318 AKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG-HGPQVITTAD  384 (386)
T ss_dssp             TTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC-SSCCEEEECC
T ss_pred             CCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC-CCceeEECCc
Confidence            9999999887632 3678999999997 66665 458999999999999999987432 2356677765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.24  E-value=6.4e-10  Score=118.52  Aligned_cols=196  Identities=16%  Similarity=0.118  Sum_probs=137.8

Q ss_pred             CCEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEE-------ecCCCCEEEEEEcCCCCEEEEEEC-----CCeE
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQ--DNTIRLWSLLLWRCLVVY-------KGHGHPVWDIKFSPHGYYFASAGH-----DRMA  526 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~--Dg~V~iwdl~t~~~~~~~-------~~h~~~V~~v~~sp~g~~l~sgs~-----Dg~i  526 (711)
                      ..+..++++++|+.+++...  ++.++||.+.+++. ..+       ..|...+.+++++++|+.+++.+.     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            67899999999998888642  34355665545543 222       124567999999999876665543     5789


Q ss_pred             EEEECCCCceeEEeecC------CCCeeEEEEcCCCCEE-EEEE---cCCcEEEEECCCCcEEEEeeCCC----------
Q psy14440        527 RLWATDSYHPLRLFVGH------YSDVDCVQFHPNSNYV-ATGS---SDRTIRLWDCVTGSHVRLLTGHK----------  586 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~~h------~~~V~~v~~sp~~~~l-atgs---~Dg~I~iwD~~~~~~v~~~~~h~----------  586 (711)
                      .+||+.+++.++.+...      ...+..+++++++.++ ++.+   .++.|.+||..+++..+.+.+|.          
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            99999988877666532      2456899999865454 5544   57899999999888777665431          


Q ss_pred             -------------------CCeEEEEEecCCCEEEEEeCCC-cEEEEECC---CCe-----EEE--EeeCCCCCEEEEEE
Q psy14440        587 -------------------APVYALSFSVCGRFLASAGGDG-NVHMWDLS---NGH-----LLT--LLTGHTDVVRALCF  636 (711)
Q Consensus       587 -------------------~~I~~la~spdg~~Lasgs~Dg-~I~iwDl~---sg~-----~i~--~l~~h~~~V~sl~f  636 (711)
                                         ..++.|+|+++|++|+++..++ .|..++..   .+.     ...  ...++.+....+++
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~  255 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI  255 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence                               2368899999999998887766 55555431   111     000  11133345567999


Q ss_pred             eCCCCEEEEEeCCCcEEEEeC
Q psy14440        637 SRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       637 spdg~~Lasgs~Dg~V~iWdl  657 (711)
                      +++|+++++...++.|.+||.
T Consensus       256 d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          256 DKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             CTTCCEEEEEGGGTEEEEEET
T ss_pred             CCCCCEEEEccCCCeEEEEEC
Confidence            999999999989999999997

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.24  E-value=2.1e-09  Score=125.61  Aligned_cols=262  Identities=8%  Similarity=-0.019  Sum_probs=175.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeecc--------------------CccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        399 VSILAVGFSESYIKLWSLVPQKLKAMKS--------------------SDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       399 g~~LatG~~dg~I~vWdl~~~~~~~~~~--------------------~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      +..|++++.++.|..+|..+++..-...                    .-....+.+++.++.+..+|..+++.+..+..
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~  149 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT  149 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence            4566666677778888876655322110                    01123455667789999999999998877654


Q ss_pred             c--cCCEEEEEEcC---CCCEEEEEe------CCCeEEEEECCCCeEEEEEecCC-------------------------
Q psy14440        459 H--EGPVRKLSFSP---DRSLLLSCS------QDNTIRLWSLLLWRCLVVYKGHG-------------------------  502 (711)
Q Consensus       459 h--~~~V~~l~fsp---dg~~L~s~s------~Dg~V~iwdl~t~~~~~~~~~h~-------------------------  502 (711)
                      .  ......+..+|   ++ .+++++      .+|.|+.||..+++.+..+....                         
T Consensus       150 ~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~  228 (689)
T 1yiq_A          150 RADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYV  228 (689)
T ss_dssp             CSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHH
T ss_pred             cCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceee
Confidence            2  11111111122   44 444443      37899999999999988775210                         


Q ss_pred             -----CCE-EEEEEcCCCCEEEEEECCCe-------------------EEEEECCCCceeEEeec--CC-------CCee
Q psy14440        503 -----HPV-WDIKFSPHGYYFASAGHDRM-------------------ARLWATDSYHPLRLFVG--HY-------SDVD  548 (711)
Q Consensus       503 -----~~V-~~v~~sp~g~~l~sgs~Dg~-------------------i~lwd~~~~~~~~~~~~--h~-------~~V~  548 (711)
                           ..+ ..+++++++..+++++.++.                   |..||.++++.+..+..  |.       ..+.
T Consensus       229 ~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~  308 (689)
T 1yiq_A          229 EQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMI  308 (689)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             ecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcE
Confidence                 011 15778888888998887764                   99999999998887764  21       1122


Q ss_pred             EEEEcCCCC---EEEEEEcCCcEEEEECCCCcEEEEeeCCC-C-------------------------------------
Q psy14440        549 CVQFHPNSN---YVATGSSDRTIRLWDCVTGSHVRLLTGHK-A-------------------------------------  587 (711)
Q Consensus       549 ~v~~sp~~~---~latgs~Dg~I~iwD~~~~~~v~~~~~h~-~-------------------------------------  587 (711)
                      ......+|+   .++.++.+|.++++|..+|+.+....-.. .                                     
T Consensus       309 l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg  388 (689)
T 1yiq_A          309 LAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGA  388 (689)
T ss_dssp             EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCS
T ss_pred             EEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccc
Confidence            222223554   78899999999999999999874332110 0                                     


Q ss_pred             -CeEEEEEecCCCEEEEEeC---------------------------------------------CCcEEEEECCCCeEE
Q psy14440        588 -PVYALSFSVCGRFLASAGG---------------------------------------------DGNVHMWDLSNGHLL  621 (711)
Q Consensus       588 -~I~~la~spdg~~Lasgs~---------------------------------------------Dg~I~iwDl~sg~~i  621 (711)
                       .-..++++|+..+++++..                                             +|.|..||+.+|+.+
T Consensus       389 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~  468 (689)
T 1yiq_A          389 HDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA  468 (689)
T ss_dssp             SCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE
T ss_pred             cCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeE
Confidence             0112688998888776532                                             378999999999998


Q ss_pred             EEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        622 TLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       622 ~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      -.+..+.. +..-.++..+.++++|+.||.|+.||.++.+.
T Consensus       469 W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          469 WEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             EEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             eEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence            88775542 33345666788999999999999999987654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.22  E-value=3.8e-10  Score=132.12  Aligned_cols=196  Identities=14%  Similarity=0.059  Sum_probs=137.2

Q ss_pred             ccCCEEEEEEcCCCCEEEEE-----eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCe--------
Q psy14440        459 HEGPVRKLSFSPDRSLLLSC-----SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRM--------  525 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~-----s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~--------  525 (711)
                      |...+.+++|||||++|+-+     +.+.+|++||+.+++.+.... +......++|+ ||+.|+.++.+..        
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            45578899999999988843     333579999999998654311 11112467899 9999999987743        


Q ss_pred             -----EEEEECCCCce--eEEeec---CCCCeeEEEEcCCCCEEEEEEc----CCcEEEEECCCCc-EEEEeeCCCCCeE
Q psy14440        526 -----ARLWATDSYHP--LRLFVG---HYSDVDCVQFHPNSNYVATGSS----DRTIRLWDCVTGS-HVRLLTGHKAPVY  590 (711)
Q Consensus       526 -----i~lwd~~~~~~--~~~~~~---h~~~V~~v~~sp~~~~latgs~----Dg~I~iwD~~~~~-~v~~~~~h~~~I~  590 (711)
                           |++|++.+...  ...+..   |...+..+.|+|+|++|+..+.    ++.|++||+.++. ..+.+..+.....
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~  284 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV  284 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence                 99999987643  333332   3445788999999999876553    2489999998764 4556666666666


Q ss_pred             EEEEecCCCEEEE-EeCC---CcEEEEECCCCeE--EEEeeCCCCCEEEEEEeCCCCEEEEEeCCC---cEEEEeCCC
Q psy14440        591 ALSFSVCGRFLAS-AGGD---GNVHMWDLSNGHL--LTLLTGHTDVVRALCFSRDGNILASSGQDC---SVKLWDFAK  659 (711)
Q Consensus       591 ~la~spdg~~Las-gs~D---g~I~iwDl~sg~~--i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg---~V~iWdl~~  659 (711)
                      .. |+++|..|+. +..+   +.|.+||+.++..  ...+..|...+.  .|+++++.|+....++   .|++||+..
T Consensus       285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence            65 6666665554 4333   6899999988754  345556665554  8899998887766544   688998863

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.20  E-value=3.7e-12  Score=137.65  Aligned_cols=182  Identities=16%  Similarity=0.038  Sum_probs=108.3

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCC-ee-
Q psy14440        471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSD-VD-  548 (711)
Q Consensus       471 dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~-V~-  548 (711)
                      ++..+++++.||.|+.||..+++.+..+..  ..+.+..+..++..+++++.||.++.||..+++.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            577899999999999999999999988886  45555555667778888889999999999988876665433211 10 


Q ss_pred             EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCC
Q psy14440        549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHT  628 (711)
Q Consensus       549 ~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~  628 (711)
                      +..+. .+..|++|+.|+.|+.||..+|+.+..+..+.    ...++|++..|++++.||.|+.||.++|+.+..+..+.
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~  160 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD  160 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence            01111 34577888889999999999999887776543    23456788899999999999999999998765554221


Q ss_pred             CCEEEEEEeCCC---CEEEEEeCCCcEEEEeCCCCC
Q psy14440        629 DVVRALCFSRDG---NILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       629 ~~V~sl~fspdg---~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                        ....+++.++   ..+++++.||.|+.||..+..
T Consensus       161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             --ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence              1223333332   557778899999999987643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.20  E-value=3.9e-12  Score=137.48  Aligned_cols=205  Identities=15%  Similarity=0.043  Sum_probs=114.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEE
Q psy14440        398 DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLS  477 (711)
Q Consensus       398 dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s  477 (711)
                      ++..|++|+.||.|..||..++++                               ...+..  +.+.+..+..++..+++
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~-------------------------------~W~~~~--~~~~s~p~~~~g~~~v~   54 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSI-------------------------------KWTLKE--DPVLQVPTHVEEPAFLP   54 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCE-------------------------------EEEEEC--CCSCCCC-----CCEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCE-------------------------------EEEecC--CCceecceEcCCCEEEE
Confidence            567888899999999998765443                               222222  23344445567778888


Q ss_pred             EeCCCeEEEEECCCCeEEEEEecCCCC-EE-EEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCC
Q psy14440        478 CSQDNTIRLWSLLLWRCLVVYKGHGHP-VW-DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN  555 (711)
Q Consensus       478 ~s~Dg~V~iwdl~t~~~~~~~~~h~~~-V~-~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~  555 (711)
                      ++.||.|+.||..+++.+..+..+... +. +..+. .+..+++++.|+.++.||.++++.+..+..+.    .+.++|+
T Consensus        55 ~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~  129 (369)
T 2hz6_A           55 DPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPS  129 (369)
T ss_dssp             CTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-----------------------
T ss_pred             eCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----ccccccc
Confidence            889999999999988877666543211 10 00111 34577888889999999999999887776543    2345668


Q ss_pred             CCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCC---CEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEE
Q psy14440        556 SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCG---RFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVR  632 (711)
Q Consensus       556 ~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg---~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~  632 (711)
                      +..+++++.|+.|+.||..+|+.+..+..+.  ....+++.++   ..+++++.||.|+.||..+|+.+..+......+.
T Consensus       130 ~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~  207 (369)
T 2hz6_A          130 TSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVA  207 (369)
T ss_dssp             ---EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEE
T ss_pred             CCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEE
Confidence            8899999999999999999998765554221  1223333332   5677788999999999999999887764333333


Q ss_pred             EEEEeCCCCE
Q psy14440        633 ALCFSRDGNI  642 (711)
Q Consensus       633 sl~fspdg~~  642 (711)
                      ...++.+|..
T Consensus       208 ~~~~~~dg~~  217 (369)
T 2hz6_A          208 FYVWQREGLR  217 (369)
T ss_dssp             EEECTTSSCE
T ss_pred             EEEecCCceE
Confidence            3445556643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.20  E-value=3.5e-09  Score=123.51  Aligned_cols=261  Identities=12%  Similarity=0.067  Sum_probs=182.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeeccCc---------------cccccccccC------CcEEEEEecCCCeeEEEe
Q psy14440        398 DVSILAVGFSESYIKLWSLVPQKLKAMKSSD---------------QLQDIEMECD------DILVRIMDERNAETTRTL  456 (711)
Q Consensus       398 dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~---------------~~~~l~~~~~------d~~i~i~d~~~~~~~~~l  456 (711)
                      ++..|++++.|+.|..+|..++++.-.....               ....+.++..      ++.++.+|..+++.+..+
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            4567888888999999999776643211110               0122333332      689999999999988776


Q ss_pred             ecccCC--------------------------------EEEEEEcCCCCEEEEEeCCC-------------------eEE
Q psy14440        457 VGHEGP--------------------------------VRKLSFSPDRSLLLSCSQDN-------------------TIR  485 (711)
Q Consensus       457 ~~h~~~--------------------------------V~~l~fspdg~~L~s~s~Dg-------------------~V~  485 (711)
                      ......                                ...+++++++..++.++.++                   +|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            542211                                13578889999998887664                   599


Q ss_pred             EEECCCCeEEEEEecCCC---------CEEEEEEcCCC---CEEEEEECCCeEEEEECCCCceeEEeecCCC--------
Q psy14440        486 LWSLLLWRCLVVYKGHGH---------PVWDIKFSPHG---YYFASAGHDRMARLWATDSYHPLRLFVGHYS--------  545 (711)
Q Consensus       486 iwdl~t~~~~~~~~~h~~---------~V~~v~~sp~g---~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~--------  545 (711)
                      .+|..+++.+..++....         ....+....+|   ..+++++.+|.++++|.++++.+..+.....        
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~  366 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK  366 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence            999999999988874221         12222333366   6899999999999999999998765542110        


Q ss_pred             ---Ce------------------------eEEEEcCCCCEEEEEEcC---------------------------------
Q psy14440        546 ---DV------------------------DCVQFHPNSNYVATGSSD---------------------------------  565 (711)
Q Consensus       546 ---~V------------------------~~v~~sp~~~~latgs~D---------------------------------  565 (711)
                         .+                        ..++|+|++.++++.+.+                                 
T Consensus       367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~  446 (677)
T 1kb0_A          367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF  446 (677)
T ss_dssp             TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred             CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence               00                        156889988888776532                                 


Q ss_pred             ----------CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCC-CCEEEE
Q psy14440        566 ----------RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHT-DVVRAL  634 (711)
Q Consensus       566 ----------g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~-~~V~sl  634 (711)
                                |.|..||+.+|+.+..+. +...+....++.+|..+++++.||.+++||.++|+.+..+.... ....-+
T Consensus       447 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~  525 (677)
T 1kb0_A          447 NAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPS  525 (677)
T ss_dssp             CSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred             ccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCE
Confidence                      789999999999887775 33444555677788899999999999999999999999887443 223345


Q ss_pred             EEeCCCCEEEEE-eC----------------CCcEEEEeCCC
Q psy14440        635 CFSRDGNILASS-GQ----------------DCSVKLWDFAK  659 (711)
Q Consensus       635 ~fspdg~~Lasg-s~----------------Dg~V~iWdl~~  659 (711)
                      .|..+|+.+++. +.                .+.+.+|.+..
T Consensus       526 ~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          526 TYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             EEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             EEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence            677788744432 22                36788888874

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.19  E-value=1.7e-09  Score=126.04  Aligned_cols=263  Identities=8%  Similarity=-0.052  Sum_probs=178.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeecc-C-------------------ccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        399 VSILAVGFSESYIKLWSLVPQKLKAMKS-S-------------------DQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       399 g~~LatG~~dg~I~vWdl~~~~~~~~~~-~-------------------~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      +..|++++.++.|.-+|..+++..-... .                   -....+.+++.++.+..+|..+++.+..+..
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~  156 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNT  156 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecC
Confidence            3455555566677777766554321110 0                   0223455667788999999999999888775


Q ss_pred             c-c----CCEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeEEEEEecCCCC-----------------------
Q psy14440        459 H-E----GPVRKLSFSPDRSLLLSCSQ------DNTIRLWSLLLWRCLVVYKGHGHP-----------------------  504 (711)
Q Consensus       459 h-~----~~V~~l~fspdg~~L~s~s~------Dg~V~iwdl~t~~~~~~~~~h~~~-----------------------  504 (711)
                      + .    ..+.+.-.. .+..+++++.      +|.|+.||..+++.+..+......                       
T Consensus       157 ~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~  235 (677)
T 1kb0_A          157 FEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW  235 (677)
T ss_dssp             TTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred             CcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCce
Confidence            5 2    112111111 2345555543      799999999999999887643211                       


Q ss_pred             ---------EEEEEEcCCCCEEEEEECCC-------------------eEEEEECCCCceeEEeec--CC-------CCe
Q psy14440        505 ---------VWDIKFSPHGYYFASAGHDR-------------------MARLWATDSYHPLRLFVG--HY-------SDV  547 (711)
Q Consensus       505 ---------V~~v~~sp~g~~l~sgs~Dg-------------------~i~lwd~~~~~~~~~~~~--h~-------~~V  547 (711)
                               ...+++++++..++.++.++                   .|..+|.++++.+..+..  |.       ...
T Consensus       236 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p  315 (677)
T 1kb0_A          236 WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPM  315 (677)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCC
T ss_pred             eEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCc
Confidence                     12467888888888887664                   599999999998877654  21       122


Q ss_pred             eEEEEcCCC---CEEEEEEcCCcEEEEECCCCcEEEEeeCCC----------C-Ce------------------------
Q psy14440        548 DCVQFHPNS---NYVATGSSDRTIRLWDCVTGSHVRLLTGHK----------A-PV------------------------  589 (711)
Q Consensus       548 ~~v~~sp~~---~~latgs~Dg~I~iwD~~~~~~v~~~~~h~----------~-~I------------------------  589 (711)
                      ..+....+|   ..+++++.+|.|+++|..+|+.+..+....          + .+                        
T Consensus       316 ~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w  395 (677)
T 1kb0_A          316 ILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNW  395 (677)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCS
T ss_pred             EEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCC
Confidence            233333467   689999999999999999999887654211          0 01                        


Q ss_pred             EEEEEecCCCEEEEEeC-------------------------------------------CCcEEEEECCCCeEEEEeeC
Q psy14440        590 YALSFSVCGRFLASAGG-------------------------------------------DGNVHMWDLSNGHLLTLLTG  626 (711)
Q Consensus       590 ~~la~spdg~~Lasgs~-------------------------------------------Dg~I~iwDl~sg~~i~~l~~  626 (711)
                      ..++++|++.++++...                                           .|.|..||+.+|+.+..+..
T Consensus       396 ~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~  475 (677)
T 1kb0_A          396 HPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH  475 (677)
T ss_dssp             SCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC
Confidence            14688999888877543                                           27899999999999887763


Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCc
Q psy14440        627 HTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDE  663 (711)
Q Consensus       627 h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~  663 (711)
                       ...+.+..++.++.+++.++.||.|++||..+....
T Consensus       476 -~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          476 -VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (677)
T ss_dssp             -SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             -CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence             334455566778888999999999999999876543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.18  E-value=5.8e-09  Score=121.89  Aligned_cols=247  Identities=12%  Similarity=0.073  Sum_probs=169.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeec-cC------------c--ccccccccc------CCcEEEEEecCCCeeEEEe
Q psy14440        398 DVSILAVGFSESYIKLWSLVPQKLKAMK-SS------------D--QLQDIEMEC------DDILVRIMDERNAETTRTL  456 (711)
Q Consensus       398 dg~~LatG~~dg~I~vWdl~~~~~~~~~-~~------------~--~~~~l~~~~------~d~~i~i~d~~~~~~~~~l  456 (711)
                      ++..|++++.|+.|..+|..++++.-.. ..            .  ....+.++.      .++.++.+|..+++.+..+
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            3567888889999999999877653211 10            0  011222322      2688999999999988776


Q ss_pred             ecc-------------------------------cCCEEEEEEcCCCCEEEEEeCCCe-------------------EEE
Q psy14440        457 VGH-------------------------------EGPVRKLSFSPDRSLLLSCSQDNT-------------------IRL  486 (711)
Q Consensus       457 ~~h-------------------------------~~~V~~l~fspdg~~L~s~s~Dg~-------------------V~i  486 (711)
                      ...                               ......+++++++..++.++.++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            521                               011125788898889999988764                   999


Q ss_pred             EECCCCeEEEEEecCCC---------CEEEEEEcCCCC---EEEEEECCCeEEEEECCCCceeEEeecCC----------
Q psy14440        487 WSLLLWRCLVVYKGHGH---------PVWDIKFSPHGY---YFASAGHDRMARLWATDSYHPLRLFVGHY----------  544 (711)
Q Consensus       487 wdl~t~~~~~~~~~h~~---------~V~~v~~sp~g~---~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~----------  544 (711)
                      ||..+++.+..++....         ++.......+|+   .++.++.+|.++++|.++++.+.......          
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~  359 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK  359 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence            99999999988875211         122222222554   78899999999999999998874322100          


Q ss_pred             -----------------------------CCeeEEEEcCCCCEEEEEEc-------------------------------
Q psy14440        545 -----------------------------SDVDCVQFHPNSNYVATGSS-------------------------------  564 (711)
Q Consensus       545 -----------------------------~~V~~v~~sp~~~~latgs~-------------------------------  564 (711)
                                                   ..-..++|+|+..++++++.                               
T Consensus       360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  439 (689)
T 1yiq_A          360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM  439 (689)
T ss_dssp             TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred             CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence                                         00123788888888777632                               


Q ss_pred             --------------CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCC
Q psy14440        565 --------------DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDV  630 (711)
Q Consensus       565 --------------Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~  630 (711)
                                    +|+|+.||+.+|+.+..+..+. .+..-.++..|.++++|+.||.|+.||.++|+.+..++...+.
T Consensus       440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~  518 (689)
T 1yiq_A          440 PEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGV  518 (689)
T ss_dssp             CSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             CcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCc
Confidence                          3779999999999888776443 2333456667889999999999999999999999888754332


Q ss_pred             -EEEEEEeCCCCEEEE
Q psy14440        631 -VRALCFSRDGNILAS  645 (711)
Q Consensus       631 -V~sl~fspdg~~Las  645 (711)
                       ..-+.|..+|+..++
T Consensus       519 ~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          519 MAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             CSCCEEEEETTEEEEE
T ss_pred             ccCceEEEECCEEEEE
Confidence             244677788874433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.16  E-value=2.2e-08  Score=107.49  Aligned_cols=249  Identities=7%  Similarity=-0.017  Sum_probs=168.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeee-ccC--------ccccccccccCCcEEEEEecCCCeeEEEeecccCCE-----
Q psy14440        398 DVSILAVGFSESYIKLWSLVPQKLKAM-KSS--------DQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV-----  463 (711)
Q Consensus       398 dg~~LatG~~dg~I~vWdl~~~~~~~~-~~~--------~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V-----  463 (711)
                      ++..+++++.++.|..+|..++++.-. ...        .....+.++..++.+..+|..+++............     
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~  181 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE  181 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence            455777888899999999987664321 111        112345566778899999999998877765432211     


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC-------EEEEEEcC--CCCEEEEEECCCeEEEEECCCC
Q psy14440        464 RKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP-------VWDIKFSP--HGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       464 ~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~-------V~~v~~sp--~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      ......  +..++.++.++.|..+|..+++.+..+......       +..+...|  .+..+++++.++.+..+|..++
T Consensus       182 ~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG  259 (376)
T 3q7m_A          182 SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG  259 (376)
T ss_dssp             CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC
T ss_pred             CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC
Confidence            112222  457888888999999999999988776532110       00011111  2457888888999999999999


Q ss_pred             ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC-CCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy14440        535 HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG-HKAPVYALSFSVCGRFLASAGGDGNVHMW  613 (711)
Q Consensus       535 ~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~-h~~~I~~la~spdg~~Lasgs~Dg~I~iw  613 (711)
                      +.+....  .....++..  ++..+++++.++.|..+|..+|+.+..... ....+......  +..|++++.+|.|.++
T Consensus       260 ~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~  333 (376)
T 3q7m_A          260 QIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWI  333 (376)
T ss_dssp             CEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEE
T ss_pred             cEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEE
Confidence            8776654  233444444  367888888999999999999998776652 22223333332  5678889999999999


Q ss_pred             ECCCCeEEEEeeCCCCCEEE-EEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        614 DLSNGHLLTLLTGHTDVVRA-LCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       614 Dl~sg~~i~~l~~h~~~V~s-l~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      |..+|+.+.........+.+ ....  +..|+.++.+|.|..||
T Consensus       334 d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          334 NVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             ETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred             ECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence            99999998887754333322 2222  55788889999999987

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.14  E-value=1.6e-09  Score=113.47  Aligned_cols=257  Identities=9%  Similarity=-0.029  Sum_probs=176.7

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCc--------cccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSD--------QLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~--------~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      ..+.++....+|.+.+ |+.+  |..+|..+..+.......        ....+.+++.++.+..+|.. ++.......+
T Consensus        60 ~~~~~~~~~~~g~l~v-~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~  135 (330)
T 3hxj_A           60 IIECRPSIGKDGTIYF-GSDK--VYAINPDGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTK  135 (330)
T ss_dssp             EEEECCEETTTTEECC-SSCE--EEEECCCGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECS
T ss_pred             CcccceEEecCCcEEE-ecCc--EEEECCCCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCC
Confidence            3456777777776444 4444  888886443322211110        12334556667888889987 6666666656


Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEE
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL  539 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~  539 (711)
                      ...+.++....++. |+.++.++.|..||.. ++.+..+......+.++....++..++ ++  +.+..|| .+++.+..
T Consensus       136 ~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~  209 (330)
T 3hxj_A          136 KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWN  209 (330)
T ss_dssp             SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEE
T ss_pred             CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEE
Confidence            66667777776776 6667788999999998 887777776666677788877776544 44  7899999 67776666


Q ss_pred             eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q psy14440        540 FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGH  619 (711)
Q Consensus       540 ~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~  619 (711)
                      +......+.++...+++. |.+++.++.|..+| .+++.+..+......+.++.+..+| .|+.++.+|.|..+|. +++
T Consensus       210 ~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~  285 (330)
T 3hxj_A          210 FYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGT  285 (330)
T ss_dssp             ECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSC
T ss_pred             EccCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCc
Confidence            665666788888887764 55677788888888 4666666666554445556666556 4667888889999995 788


Q ss_pred             EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        620 LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       620 ~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      .+..+......+.++....+|+ |..|+.+|.+++.....
T Consensus       286 ~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          286 EKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             EEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred             EEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence            7777765566677787777776 45588899999987654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.14  E-value=1.2e-09  Score=117.59  Aligned_cols=214  Identities=10%  Similarity=-0.047  Sum_probs=141.3

Q ss_pred             EEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeEEEEEecC-------CC
Q psy14440        441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCS----------QDNTIRLWSLLLWRCLVVYKGH-------GH  503 (711)
Q Consensus       441 ~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s----------~Dg~V~iwdl~t~~~~~~~~~h-------~~  503 (711)
                      .+.++|..+++.+.++.....+  .+.++||+++++++.          .+++|.+||+.+++.+..+...       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            5666677777888777655556  799999999999886          3688999999999999988643       12


Q ss_pred             CEEEEEEcCCCCEEEEEEC--CCeEEE--EECCCCceeEEeecC------------------CCCeeEEEE---------
Q psy14440        504 PVWDIKFSPHGYYFASAGH--DRMARL--WATDSYHPLRLFVGH------------------YSDVDCVQF---------  552 (711)
Q Consensus       504 ~V~~v~~sp~g~~l~sgs~--Dg~i~l--wd~~~~~~~~~~~~h------------------~~~V~~v~~---------  552 (711)
                      ....+.++|+|++++++..  +..+.+  +|..+   ++.+...                  .+.+..+..         
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~  201 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI  201 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence            3457999999999998874  467888  88865   2222110                  000000100         


Q ss_pred             -----------------cCCCCEEEEEEcCCcEEEEECCCCc--EEEEeeCC----------CCCeEEEEEecCCCEEEE
Q psy14440        553 -----------------HPNSNYVATGSSDRTIRLWDCVTGS--HVRLLTGH----------KAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       553 -----------------sp~~~~latgs~Dg~I~iwD~~~~~--~v~~~~~h----------~~~I~~la~spdg~~Las  603 (711)
                                       .+++..++..+. +.|.+.|+.++.  .+..+.-.          ......+++++||+.+++
T Consensus       202 v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV  280 (368)
T 1mda_H          202 VGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             EEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence                             222233333333 566666664332  12211100          011122689999998887


Q ss_pred             EeC---------CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCC-EEEEEe-CCCcEEEEeCCCCC
Q psy14440        604 AGG---------DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGN-ILASSG-QDCSVKLWDFAKLS  661 (711)
Q Consensus       604 gs~---------Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~-~Lasgs-~Dg~V~iWdl~~~~  661 (711)
                      +..         ++.+.++|+.+++.+..+.... ..++++|++||+ .+++.. .+++|.|+|+.+.+
T Consensus       281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             EeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            643         2356699999999998886443 578999999998 566666 59999999998643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.13  E-value=2.8e-08  Score=106.73  Aligned_cols=251  Identities=7%  Similarity=-0.056  Sum_probs=167.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceee-eccC------------------ccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        399 VSILAVGFSESYIKLWSLVPQKLKA-MKSS------------------DQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       399 g~~LatG~~dg~I~vWdl~~~~~~~-~~~~------------------~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      +..|.+++.++.|..||..+++..- ....                  .....+.+++.++.+..+|..+++........
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~  132 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA  132 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence            4566677777888888886655431 1110                  11233555667788999999989887766544


Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCE-----EEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV-----WDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V-----~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      ..........  +..+++++.++.|..+|..+++.+..+.......     ......  +..+++++.++.+..+|..++
T Consensus       133 ~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG  208 (376)
T 3q7m_A          133 GEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQG  208 (376)
T ss_dssp             SCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTC
T ss_pred             CceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCC
Confidence            3221122222  4578888899999999999999888776432211     111222  447888888999999999999


Q ss_pred             ceeEEeecCCCC----------ee-EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEE
Q psy14440        535 HPLRLFVGHYSD----------VD-CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       535 ~~~~~~~~h~~~----------V~-~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Las  603 (711)
                      +.+.........          +. ....  .+..+++++.++.|..+|..+|+.+.....  ....++..  ++..|++
T Consensus       209 ~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~  282 (376)
T 3q7m_A          209 QMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYL  282 (376)
T ss_dssp             CEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEE
T ss_pred             cEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEE
Confidence            887665432110          11 1111  356788888899999999999998766542  33444544  3667888


Q ss_pred             EeCCCcEEEEECCCCeEEEEeeCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        604 AGGDGNVHMWDLSNGHLLTLLTGH-TDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       604 gs~Dg~I~iwDl~sg~~i~~l~~h-~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      ++.+|.|..+|..+|+.+...... ...+.+....  +..|+.++.+|.|.+||..+..
T Consensus       283 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          283 VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             EETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTCC
T ss_pred             EcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCCc
Confidence            888999999999999988776522 2223333333  5678889999999999987654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.07  E-value=4.7e-09  Score=109.92  Aligned_cols=248  Identities=10%  Similarity=0.023  Sum_probs=159.9

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCceeeecc-C---------ccccccccccCCcEEEEEecCCCeeEEEeecccCC
Q psy14440        393 AEISEDVSILAVGFSESYIKLWSLVPQKLKAMKS-S---------DQLQDIEMECDDILVRIMDERNAETTRTLVGHEGP  462 (711)
Q Consensus       393 l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~-~---------~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~  462 (711)
                      ..+..++. |.+|+.++.|..|| .+++...... .         .....+.++..+  +..+|. +++....+..+...
T Consensus        25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~   99 (330)
T 3hxj_A           25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAI   99 (330)
T ss_dssp             CEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC----
T ss_pred             ceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCCc
Confidence            34444554 44555667777777 4443221100 0         111223333333  777775 44443333222222


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeec
Q psy14440        463 VRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG  542 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~  542 (711)
                      .....+.  +..|+.++.++.|..+|.. ++....+..+...+.++...+++. +..++.++.+..||.. ++.+..+..
T Consensus       100 ~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~  174 (330)
T 3hxj_A          100 VSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT  174 (330)
T ss_dssp             -CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred             ccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec
Confidence            2233333  5568888889999999998 777777766666666777777775 6667788999999998 777766666


Q ss_pred             CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy14440        543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLT  622 (711)
Q Consensus       543 h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~  622 (711)
                      ....+.++.+..++..++ ++  +.|..|| .+++.+..+......+.+++.+++|. |..++.++.|..+| .+++.+.
T Consensus       175 ~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~  248 (330)
T 3hxj_A          175 NDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKW  248 (330)
T ss_dssp             SSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEE
T ss_pred             CCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeE
Confidence            666777888877776544 44  8899999 78877777766667788888888875 45566778888888 4677766


Q ss_pred             EeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        623 LLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       623 ~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      .+......+.++.+..+|+ |..++.+|.|..+|.
T Consensus       249 ~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          249 RFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP  282 (330)
T ss_dssp             EEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred             EeeCCCCccccceEcCCCe-EEEecCCCCEEEECC
Confidence            6665544445566665664 566778888999984

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.05  E-value=4.6e-08  Score=106.95  Aligned_cols=185  Identities=11%  Similarity=0.003  Sum_probs=117.3

Q ss_pred             CcEEEEEecCCCeeEEEeecc-------cCCEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEEecCCC-CE---
Q psy14440        439 DILVRIMDERNAETTRTLVGH-------EGPVRKLSFSPDRSLLLSCSQ--DNTIRLWSLLLWRCLVVYKGHGH-PV---  505 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h-------~~~V~~l~fspdg~~L~s~s~--Dg~V~iwdl~t~~~~~~~~~h~~-~V---  505 (711)
                      ++.|.++|..+.+.+..+.-.       ...-..+.|++||++|+++..  +++|.+.|+.+++.+..+..... .+   
T Consensus       148 ~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~  227 (426)
T 3c75_H          148 TDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPA  227 (426)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccC
Confidence            456777777777666655321       122356788888888887764  46788888888877766653111 00   


Q ss_pred             ---EEEEE-------------------------------------cCCCCEEEEEECCCeEEEEECCCCcee--EEeec-
Q psy14440        506 ---WDIKF-------------------------------------SPHGYYFASAGHDRMARLWATDSYHPL--RLFVG-  542 (711)
Q Consensus       506 ---~~v~~-------------------------------------sp~g~~l~sgs~Dg~i~lwd~~~~~~~--~~~~~-  542 (711)
                         .-+.+                                     .+++..++..+..+.+.+.|.......  ..+.- 
T Consensus       228 g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~  307 (426)
T 3c75_H          228 SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEAL  307 (426)
T ss_dssp             ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESS
T ss_pred             CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeec
Confidence               00222                                     333333333334444555554332211  00000 


Q ss_pred             ---------CCCCeeEEEEcCCCCEEEEEEc----------CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCC-EEE
Q psy14440        543 ---------HYSDVDCVQFHPNSNYVATGSS----------DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGR-FLA  602 (711)
Q Consensus       543 ---------h~~~V~~v~~sp~~~~latgs~----------Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~-~La  602 (711)
                               .......++++++++++++...          +++|.++|+.+++.+..+... .....++|++||+ +++
T Consensus       308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~ly  386 (426)
T 3c75_H          308 TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLY  386 (426)
T ss_dssp             CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEE
T ss_pred             cccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEE
Confidence                     0011223789999887777643          357999999999999888632 2478999999999 888


Q ss_pred             EEe-CCCcEEEEECCCCeEEEEe
Q psy14440        603 SAG-GDGNVHMWDLSNGHLLTLL  624 (711)
Q Consensus       603 sgs-~Dg~I~iwDl~sg~~i~~l  624 (711)
                      ++. .++.|.++|+.+++.++++
T Consensus       387 v~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          387 ALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEcCCCCeEEEEECCCCCEEEEe
Confidence            888 5899999999999999887

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.04  E-value=6.1e-07  Score=91.43  Aligned_cols=196  Identities=14%  Similarity=0.029  Sum_probs=129.3

Q ss_pred             CCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCE-EEEEECCCeEEEEECCCCceeE
Q psy14440        461 GPVRKLSFSPDRSLLLSCS-QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYY-FASAGHDRMARLWATDSYHPLR  538 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s-~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~-l~sgs~Dg~i~lwd~~~~~~~~  538 (711)
                      ..+.+++|++++..|+.+. .++.|.++++........+.........+++++++.. +++....+.|.+++.+......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            3578999999766665554 5789999999766544444333356789999986554 4455567899999987544333


Q ss_pred             EeecCCCCeeEEEEcCCCCEEEEEEc---CCcEEEEECCCCcEEEEe-eCCCCCeEEEEEecCCCEEEEEe-CCCcEEEE
Q psy14440        539 LFVGHYSDVDCVQFHPNSNYVATGSS---DRTIRLWDCVTGSHVRLL-TGHKAPVYALSFSVCGRFLASAG-GDGNVHMW  613 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp~~~~latgs~---Dg~I~iwD~~~~~~v~~~-~~h~~~I~~la~spdg~~Lasgs-~Dg~I~iw  613 (711)
                      ...........+++++++.+|+.+..   .+.|..+++... ....+ ...-.....++++++++.|+.+. ..+.|.++
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence            33323356789999997666665554   368888887543 33333 23335678999999877666554 56799999


Q ss_pred             ECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        614 DLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       614 Dl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      |+..+.....+.+ ......++.. ++.++++....+.|.++|..+
T Consensus       195 ~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~  238 (267)
T 1npe_A          195 NPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAI  238 (267)
T ss_dssp             ETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             ecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCC
Confidence            9976544444433 3345677765 444555444568899998764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.03  E-value=4.5e-08  Score=106.27  Aligned_cols=184  Identities=15%  Similarity=0.148  Sum_probs=132.3

Q ss_pred             EEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeEEEEEecCC---CCEEEEEEcCCCCEEEEEE------------
Q psy14440        463 VRKLSFSPDRSLLLSCSQD------NTIRLWSLLLWRCLVVYKGHG---HPVWDIKFSPHGYYFASAG------------  521 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s~D------g~V~iwdl~t~~~~~~~~~h~---~~V~~v~~sp~g~~l~sgs------------  521 (711)
                      -..+.++|+| .++++..+      |.|.++|..+++.+..+....   ..-.++.|+|+++.+++..            
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~  218 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK  218 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred             ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence            3567778999 77776655      789999999999999886322   2244688999999888885            


Q ss_pred             -------CCCeEEEEECCCCceeEEeecC-C-CCeeEEEE--cCCCCEEEEEEc------CCcEEEEECCCCcE--EEEe
Q psy14440        522 -------HDRMARLWATDSYHPLRLFVGH-Y-SDVDCVQF--HPNSNYVATGSS------DRTIRLWDCVTGSH--VRLL  582 (711)
Q Consensus       522 -------~Dg~i~lwd~~~~~~~~~~~~h-~-~~V~~v~~--sp~~~~latgs~------Dg~I~iwD~~~~~~--v~~~  582 (711)
                             .+.+|.+||+.+++.+..+... . .....+.|  +|+++++++++.      +++|.+|....|+.  ...+
T Consensus       219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI  298 (462)
T 2ece_A          219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI  298 (462)
T ss_dssp             TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE
Confidence                   3789999999998777776542 1 23445656  999999888774      56888776655431  1111


Q ss_pred             --eCC----------------CCCeEEEEEecCCCEEEEEeC-CCcEEEEECC---CCeEEEEeeCCC------------
Q psy14440        583 --TGH----------------KAPVYALSFSVCGRFLASAGG-DGNVHMWDLS---NGHLLTLLTGHT------------  628 (711)
Q Consensus       583 --~~h----------------~~~I~~la~spdg~~Lasgs~-Dg~I~iwDl~---sg~~i~~l~~h~------------  628 (711)
                        ...                ......|.+|+||++|.++.. .+.|.+||+.   +.+.+..+....            
T Consensus       299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~  378 (462)
T 2ece_A          299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK  378 (462)
T ss_dssp             EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred             eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence              110                234678999999999988764 6799999985   346666654321            


Q ss_pred             --CCEEEEEEeCCCCEEEEEe
Q psy14440        629 --DVVRALCFSRDGNILASSG  647 (711)
Q Consensus       629 --~~V~sl~fspdg~~Lasgs  647 (711)
                        +.-..+++++||++|+++.
T Consensus       379 ~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          379 LTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCCEEEEcCCCCEEEEEc
Confidence              1357899999999999888

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.01  E-value=9.8e-08  Score=100.35  Aligned_cols=269  Identities=9%  Similarity=0.029  Sum_probs=162.2

Q ss_pred             CCceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEE
Q psy14440        375 LPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTR  454 (711)
Q Consensus       375 lps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  454 (711)
                      +|.+..+.+.+.-....+++|+++|+++.++..++.|..|+..+..+............ ..+           .+....
T Consensus         6 ~~~~~~i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-----------~g~~~~   73 (322)
T 2fp8_A            6 SPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNK-AFC-----------ENSTDA   73 (322)
T ss_dssp             ----CEEEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCH-HHH-----------TTCCCG
T ss_pred             CCccceeecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccc-ccc-----------ccccch
Confidence            34444555555445677889999999888888899999998765444322110000000 000           000000


Q ss_pred             EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe---c-CCCCEEEEEEcC-CCCEEEEEEC-------
Q psy14440        455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK---G-HGHPVWDIKFSP-HGYYFASAGH-------  522 (711)
Q Consensus       455 ~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~---~-h~~~V~~v~~sp-~g~~l~sgs~-------  522 (711)
                      ......+.+.++++.+++..|+++...+.|..+|..++.......   + ......++++.+ +|+.+++...       
T Consensus        74 ~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~  153 (322)
T 2fp8_A           74 EKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRG  153 (322)
T ss_dssp             GGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTC
T ss_pred             hccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccc
Confidence            000112357889999733456666555668889877554322111   1 123478899999 9987766532       


Q ss_pred             ----------CCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCCCc--EEEEeeCCCCCe
Q psy14440        523 ----------DRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATG-SSDRTIRLWDCVTGS--HVRLLTGHKAPV  589 (711)
Q Consensus       523 ----------Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latg-s~Dg~I~iwD~~~~~--~v~~~~~h~~~I  589 (711)
                                ++.|..||..+++..... ........++|++++++|+++ +..+.|.+||+....  ....+....+ .
T Consensus       154 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P  231 (322)
T 2fp8_A          154 VQQIMDTSDKTGRLIKYDPSTKETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-P  231 (322)
T ss_dssp             HHHHHHHTCCCEEEEEEETTTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-E
T ss_pred             cceehcccCCCceEEEEeCCCCEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-C
Confidence                      367888888766543322 223445789999999876665 456899999987521  1222222223 7


Q ss_pred             EEEEEecCCCEEEEEeC----------CCcEEEEECCCCeEEEEeeCCC----CCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy14440        590 YALSFSVCGRFLASAGG----------DGNVHMWDLSNGHLLTLLTGHT----DVVRALCFSRDGNILASSGQDCSVKLW  655 (711)
Q Consensus       590 ~~la~spdg~~Lasgs~----------Dg~I~iwDl~sg~~i~~l~~h~----~~V~sl~fspdg~~Lasgs~Dg~V~iW  655 (711)
                      ..++++++|++.++...          .+.|..+|. .|+.+..+....    ..++++++. +++++++....+.|.++
T Consensus       232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~  309 (322)
T 2fp8_A          232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGIL  309 (322)
T ss_dssp             EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEE
T ss_pred             CCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEE
Confidence            88999999987666544          467889986 588877776442    346677764 66666666678899999


Q ss_pred             eCCC
Q psy14440        656 DFAK  659 (711)
Q Consensus       656 dl~~  659 (711)
                      ++..
T Consensus       310 ~~~~  313 (322)
T 2fp8_A          310 VYDK  313 (322)
T ss_dssp             EC--
T ss_pred             eccc
Confidence            9864

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.00  E-value=1.1e-07  Score=97.13  Aligned_cols=195  Identities=10%  Similarity=0.065  Sum_probs=141.1

Q ss_pred             CEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEEecCC-CCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeE
Q psy14440        462 PVRKLSFSPDRSLLLSCSQ--DNTIRLWSLLLWRCLVVYKGHG-HPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLR  538 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~--Dg~V~iwdl~t~~~~~~~~~h~-~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~  538 (711)
                      ...++.|++|+..+++.+.  ++.|+++|+.+++.+..+.... .....+++.. ++.+++.-.++.+.++|..+.+.+.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEE
Confidence            3689999998754444443  5799999999999998876322 2233555552 3344445578999999999999888


Q ss_pred             EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCC-----CCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy14440        539 LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHK-----APVYALSFSVCGRFLASAGGDGNVHMW  613 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~-----~~I~~la~spdg~~Lasgs~Dg~I~iw  613 (711)
                      .+.....  ....++++|+.++++..+++|.++|..+.+.++.+.-..     ..++.+.|. +|+..+....++.|.+.
T Consensus       101 ~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI  177 (266)
T 2iwa_A          101 NFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI  177 (266)
T ss_dssp             EEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence            8753211  123355678777777778999999999998888776321     246788888 77655555567899999


Q ss_pred             ECCCCeEEEEeeCC-------------CCCEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCC
Q psy14440        614 DLSNGHLLTLLTGH-------------TDVVRALCFSRDGN-ILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       614 Dl~sg~~i~~l~~h-------------~~~V~sl~fspdg~-~Lasgs~Dg~V~iWdl~~~  660 (711)
                      |..+++.+..+...             ....+.|+|+++++ +++++...++|.+.++...
T Consensus       178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            99999999888632             13568999999986 5555667889999988764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.99  E-value=2.3e-07  Score=100.71  Aligned_cols=192  Identities=13%  Similarity=0.108  Sum_probs=136.9

Q ss_pred             EEc--CCCCEEEEE-eCCCeEEEEECCCC----eEEEEEe-------cCCCCEEEEEEcCCCCEEEEEECC------CeE
Q psy14440        467 SFS--PDRSLLLSC-SQDNTIRLWSLLLW----RCLVVYK-------GHGHPVWDIKFSPHGYYFASAGHD------RMA  526 (711)
Q Consensus       467 ~fs--pdg~~L~s~-s~Dg~V~iwdl~t~----~~~~~~~-------~h~~~V~~v~~sp~g~~l~sgs~D------g~i  526 (711)
                      .++  .++++|++. ..+++|.++|+.+.    +...++.       .....-..+..+|+| .++++..+      |.+
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            346  778877665 45788999999765    6666663       111234567888999 77776655      789


Q ss_pred             EEEECCCCceeEEeecCCC---CeeEEEEcCCCCEEEEEE-------------------cCCcEEEEECCCCcEEEEeeC
Q psy14440        527 RLWATDSYHPLRLFVGHYS---DVDCVQFHPNSNYVATGS-------------------SDRTIRLWDCVTGSHVRLLTG  584 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~~h~~---~V~~v~~sp~~~~latgs-------------------~Dg~I~iwD~~~~~~v~~~~~  584 (711)
                      .++|.++++.+..+.....   --..+.|+|+++.+++..                   .+.+|.+||+.+++.+.++..
T Consensus       167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred             EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence            9999999999888863212   234588899999888875                   368999999999988887764


Q ss_pred             C-C-CCeEEEEE--ecCCCEEEEEe------CCCcEEEEECCCCeE--EEEe--eCC----------------CCCEEEE
Q psy14440        585 H-K-APVYALSF--SVCGRFLASAG------GDGNVHMWDLSNGHL--LTLL--TGH----------------TDVVRAL  634 (711)
Q Consensus       585 h-~-~~I~~la~--spdg~~Lasgs------~Dg~I~iwDl~sg~~--i~~l--~~h----------------~~~V~sl  634 (711)
                      . . .....+.|  +|+|+++++++      .+++|.+|....|+.  +..+  ...                ......|
T Consensus       247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence            2 1 23445555  99999988877      456888877655542  1211  110                2346789


Q ss_pred             EEeCCCCEEEEEeC-CCcEEEEeCCC
Q psy14440        635 CFSRDGNILASSGQ-DCSVKLWDFAK  659 (711)
Q Consensus       635 ~fspdg~~Lasgs~-Dg~V~iWdl~~  659 (711)
                      .+|+||++|.++.. .+.|.+||+..
T Consensus       327 ~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          327 DISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecC
Confidence            99999998887765 68999999964

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.92  E-value=2.2e-07  Score=94.02  Aligned_cols=185  Identities=14%  Similarity=0.141  Sum_probs=133.5

Q ss_pred             cccCC--EEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeEEEEEecCCCC-EEEEEEcCCCCEEEE-EECCCeEEEEEC
Q psy14440        458 GHEGP--VRKLSFSPDRSLLLSCSQDN--TIRLWSLLLWRCLVVYKGHGHP-VWDIKFSPHGYYFAS-AGHDRMARLWAT  531 (711)
Q Consensus       458 ~h~~~--V~~l~fspdg~~L~s~s~Dg--~V~iwdl~t~~~~~~~~~h~~~-V~~v~~sp~g~~l~s-gs~Dg~i~lwd~  531 (711)
                      .|...  ..++.|+ ++.++.+++.+|  .|+++|+.+++.+..+...... --.+...  +..+.. .-.++.+.+||.
T Consensus        38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~  114 (262)
T 3nol_A           38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNI  114 (262)
T ss_dssp             ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred             cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEEC
Confidence            45433  4789998 676667777766  8999999999999888754322 1234443  444444 446899999999


Q ss_pred             CCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC--C---CCeEEEEEecCCCEEEEEeC
Q psy14440        532 DSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH--K---APVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       532 ~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h--~---~~I~~la~spdg~~Lasgs~  606 (711)
                      ++.+.+..+.....   ...+++++..|+.+..+++|.++|..+.+.++.+...  .   ..++.+.|. +|+..+..-.
T Consensus       115 ~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~  190 (262)
T 3nol_A          115 RNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ  190 (262)
T ss_dssp             TTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             ccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence            99999988874332   2233356777777766788999999999988877542  1   345667886 7765555556


Q ss_pred             CCcEEEEECCCCeEEEEeeCC------------CCCEEEEEEeCCCCEEEEEeCC
Q psy14440        607 DGNVHMWDLSNGHLLTLLTGH------------TDVVRALCFSRDGNILASSGQD  649 (711)
Q Consensus       607 Dg~I~iwDl~sg~~i~~l~~h------------~~~V~sl~fspdg~~Lasgs~D  649 (711)
                      ++.|.+.|.++|+.+..+...            ....+.|+|+++++.|+..|..
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            889999999999999888642            1357899999998888777754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.89  E-value=1.5e-07  Score=109.49  Aligned_cols=261  Identities=8%  Similarity=-0.021  Sum_probs=169.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeecc--------------------CccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        399 VSILAVGFSESYIKLWSLVPQKLKAMKS--------------------SDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       399 g~~LatG~~dg~I~vWdl~~~~~~~~~~--------------------~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      +..|++++.++.|.-+|..+++..-...                    .-....+.+++.++.+..+|..+++.+..+..
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~  145 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT  145 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence            3455566667777777766554321110                    00123455667788999999999998877654


Q ss_pred             cc----CCEEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCeEEEEEecCC-C-----------------------
Q psy14440        459 HE----GPVRK-LSFSPDRSLLLSCSQ------DNTIRLWSLLLWRCLVVYKGHG-H-----------------------  503 (711)
Q Consensus       459 h~----~~V~~-l~fspdg~~L~s~s~------Dg~V~iwdl~t~~~~~~~~~h~-~-----------------------  503 (711)
                      ..    ..+.+ ..+ .++ .+++++.      +|.|+.+|..+++.+..+.... .                       
T Consensus       146 ~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w  223 (668)
T 1kv9_A          146 TDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW  223 (668)
T ss_dssp             SCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred             CCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence            21    11111 011 134 5555543      5899999999999998875310 0                       


Q ss_pred             -------CEEEEEEcCCCCEEEEEECCC-------------------eEEEEECCCCceeEEeec--CC-------CCee
Q psy14440        504 -------PVWDIKFSPHGYYFASAGHDR-------------------MARLWATDSYHPLRLFVG--HY-------SDVD  548 (711)
Q Consensus       504 -------~V~~v~~sp~g~~l~sgs~Dg-------------------~i~lwd~~~~~~~~~~~~--h~-------~~V~  548 (711)
                             ....+++.+.+..++.++.++                   .|..+|.++++.+..+..  |.       ....
T Consensus       224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~  303 (668)
T 1kv9_A          224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT  303 (668)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence                   011367788777888887766                   399999999998877764  22       2222


Q ss_pred             EEEEcCCCC---EEEEEEcCCcEEEEECCCCcEEEEeeCCC-----------C-C------------------------e
Q psy14440        549 CVQFHPNSN---YVATGSSDRTIRLWDCVTGSHVRLLTGHK-----------A-P------------------------V  589 (711)
Q Consensus       549 ~v~~sp~~~---~latgs~Dg~I~iwD~~~~~~v~~~~~h~-----------~-~------------------------I  589 (711)
                      ...+..+|+   .++.++.+|.++++|..+|+.+..+....           + +                        -
T Consensus       304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w  383 (668)
T 1kv9_A          304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNW  383 (668)
T ss_dssp             EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCS
T ss_pred             EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCC
Confidence            233333665   68889999999999999999874432111           0 0                        0


Q ss_pred             EEEEEecCCCEEEEEe------------------------------------CCCcEEEEECCCCeEEEEeeCCCCCEEE
Q psy14440        590 YALSFSVCGRFLASAG------------------------------------GDGNVHMWDLSNGHLLTLLTGHTDVVRA  633 (711)
Q Consensus       590 ~~la~spdg~~Lasgs------------------------------------~Dg~I~iwDl~sg~~i~~l~~h~~~V~s  633 (711)
                      ..++++|+...+++..                                    .+|.|..||+.+|+.+-....+. .+..
T Consensus       384 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~  462 (668)
T 1kv9_A          384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNG  462 (668)
T ss_dssp             SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCC
T ss_pred             CcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcC
Confidence            1267788776665421                                    24789999999999987776433 2333


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        634 LCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       634 l~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      ..+...+.++++|+.||.|++||..+...
T Consensus       463 ~~~~t~gg~vf~g~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          463 GTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (668)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ceeEeCCCEEEEECCcccchhhhhhcChh
Confidence            34555788899999999999999987544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.88  E-value=2.8e-06  Score=86.42  Aligned_cols=220  Identities=11%  Similarity=0.008  Sum_probs=140.8

Q ss_pred             CceEEEEECCCCCEE-EEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEE
Q psy14440        388 QQVTCAEISEDVSIL-AVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKL  466 (711)
Q Consensus       388 ~~V~~l~fs~dg~~L-atG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l  466 (711)
                      ..+.+++|++++..| ++-..++.|.++++.+....                               ..+........++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-------------------------------~~~~~~~~~p~~i   84 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-------------------------------TIIRQDLGSPEGI   84 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-------------------------------EEECTTCCCEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-------------------------------EEEECCCCCccEE
Confidence            357789999865544 44555678888887543211                               1111112456899


Q ss_pred             EEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEEC---CCeEEEEECCCCceeEEeec
Q psy14440        467 SFSPDRSLLLSC-SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH---DRMARLWATDSYHPLRLFVG  542 (711)
Q Consensus       467 ~fspdg~~L~s~-s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~---Dg~i~lwd~~~~~~~~~~~~  542 (711)
                      ++++++..|+.+ ...+.|.++++..................+++++++..+..+..   .+.|..++.+..........
T Consensus        85 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~  164 (267)
T 1npe_A           85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD  164 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT
T ss_pred             EEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEEC
Confidence            999976666555 45678999998754332233322346789999996555555443   46888888875432222223


Q ss_pred             CCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeE
Q psy14440        543 HYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAG-GDGNVHMWDLSNGHL  620 (711)
Q Consensus       543 h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs-~Dg~I~iwDl~sg~~  620 (711)
                      .......+++++++.+|+.+. ..+.|.++|...+.....+.+ ......+++.  +..|+.+. ..+.|.++|..+++.
T Consensus       165 ~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~  241 (267)
T 1npe_A          165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE  241 (267)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc
Confidence            345678999999877665555 467899999875544333333 2334667665  44555444 568999999999999


Q ss_pred             EEEeeCCC-CCEEEEEEeCCCC
Q psy14440        621 LTLLTGHT-DVVRALCFSRDGN  641 (711)
Q Consensus       621 i~~l~~h~-~~V~sl~fspdg~  641 (711)
                      +..+.... ...+.+++.+++.
T Consensus       242 ~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          242 MDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEECCSSCCCCCCEEEECSCC
T ss_pred             eEEEccccccccceeeecCccC
Confidence            88886433 2467888888765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.86  E-value=6.2e-06  Score=97.78  Aligned_cols=263  Identities=10%  Similarity=0.087  Sum_probs=171.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccC---c--------cccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSS---D--------QLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       390 V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~---~--------~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      |.++....+|.+.+ |+.++-|..|+..+.++......   .        ....+-+++.++-+..++..+++.......
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~  253 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHS  253 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCC
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecC
Confidence            88888888886655 56554588888766654432110   0        111222333333466777766554433222


Q ss_pred             -------ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-------CCCCEEEEEEcCCCCEEEEEECCC
Q psy14440        459 -------HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG-------HGHPVWDIKFSPHGYYFASAGHDR  524 (711)
Q Consensus       459 -------h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~-------h~~~V~~v~~sp~g~~l~sgs~Dg  524 (711)
                             ....|.++....+|.+ ..|+.+| |.+||..++........       ....|.++....+|. +..|+.++
T Consensus       254 ~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~  330 (795)
T 4a2l_A          254 PSNPKSISSNYIRSLAMDSQNRL-WIGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFG  330 (795)
T ss_dssp             TTCTTSCSCSBEEEEEECTTSCE-EEEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSS
T ss_pred             CCCccccCCCeEEEEEEcCCCCE-EEEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCC
Confidence                   1356999999888864 4455554 99999887765443221       235799999998885 56677777


Q ss_pred             eEEEEECCCCceeEEee------cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC--------CCCCeE
Q psy14440        525 MARLWATDSYHPLRLFV------GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG--------HKAPVY  590 (711)
Q Consensus       525 ~i~lwd~~~~~~~~~~~------~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~--------h~~~I~  590 (711)
                      -|..|+..+........      .....|.++....+|+ |..|+.++-|..||..++........        ....|.
T Consensus       331 Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  409 (795)
T 4a2l_A          331 GLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK  409 (795)
T ss_dssp             CEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred             CeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence            88889876543222111      1235689999887776 55678787899999887765443211        235799


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee----CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        591 ALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLT----GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       591 ~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~----~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      +++...+|+.|..|+.++.|.+||..+++......    .....|.++....+|++.+.. . +.|.+||..+
T Consensus       410 ~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~  480 (795)
T 4a2l_A          410 AVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQ  480 (795)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTT
T ss_pred             EEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCC
Confidence            99999999867778877789999998877543322    134579999998888866644 4 4588888754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.83  E-value=9.6e-07  Score=102.69  Aligned_cols=248  Identities=11%  Similarity=0.092  Sum_probs=163.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeeccC------------c--cccccccccC------CcEEEEEecCCCeeEEEeec
Q psy14440        399 VSILAVGFSESYIKLWSLVPQKLKAMKSS------------D--QLQDIEMECD------DILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       399 g~~LatG~~dg~I~vWdl~~~~~~~~~~~------------~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~l~~  458 (711)
                      +..|++++.|+.|..+|..++++.-....            .  ....+.++..      ++.++.+|..+++.+..+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            45777888899999999877664321111            0  0122333322      58899999999999877652


Q ss_pred             cc-------------------------------CCEEEEEEcCCCCEEEEEeCCC-------------------eEEEEE
Q psy14440        459 HE-------------------------------GPVRKLSFSPDRSLLLSCSQDN-------------------TIRLWS  488 (711)
Q Consensus       459 h~-------------------------------~~V~~l~fspdg~~L~s~s~Dg-------------------~V~iwd  488 (711)
                      ..                               .....+++++++..++.++.++                   .|..+|
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD  276 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence            10                               0112468888888888888776                   399999


Q ss_pred             CCCCeEEEEEecC--C-------CCEEEEEEcCCCC---EEEEEECCCeEEEEECCCCceeEEeecCC------------
Q psy14440        489 LLLWRCLVVYKGH--G-------HPVWDIKFSPHGY---YFASAGHDRMARLWATDSYHPLRLFVGHY------------  544 (711)
Q Consensus       489 l~t~~~~~~~~~h--~-------~~V~~v~~sp~g~---~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~------------  544 (711)
                      ..+++.+..++..  .       .+.....+..+|+   .++.++.+|.++++|..+++.+.......            
T Consensus       277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g  356 (668)
T 1kv9_A          277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (668)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence            9999999888752  2       2222223333564   68899999999999999998774332111            


Q ss_pred             CC------------------------eeEEEEcCCCCEEEEEE------------------------------------c
Q psy14440        545 SD------------------------VDCVQFHPNSNYVATGS------------------------------------S  564 (711)
Q Consensus       545 ~~------------------------V~~v~~sp~~~~latgs------------------------------------~  564 (711)
                      ..                        -..++++|+...+++..                                    .
T Consensus       357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~  436 (668)
T 1kv9_A          357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (668)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence            00                        01267777766655421                                    2


Q ss_pred             CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCE-EEEEEeCCCC-E
Q psy14440        565 DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVV-RALCFSRDGN-I  642 (711)
Q Consensus       565 Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V-~sl~fspdg~-~  642 (711)
                      +|.|..||+.+|+.+..+..+ .......+...|.++++|+.||.|++||.++|+.+..+....+.. .-+.+..+|+ +
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~y  515 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEE
Confidence            378999999999988776533 233333455568899999999999999999999998887543211 2344455776 4


Q ss_pred             EEEEe
Q psy14440        643 LASSG  647 (711)
Q Consensus       643 Lasgs  647 (711)
                      ++.++
T Consensus       516 va~~~  520 (668)
T 1kv9_A          516 VAIMA  520 (668)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.80  E-value=2.7e-07  Score=99.06  Aligned_cols=233  Identities=8%  Similarity=-0.044  Sum_probs=136.5

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEeCCCCceeeec------------------cCcccccccccc--CCcE
Q psy14440        392 CAEISEDVSILAVGF----------SESYIKLWSLVPQKLKAMK------------------SSDQLQDIEMEC--DDIL  441 (711)
Q Consensus       392 ~l~fs~dg~~LatG~----------~dg~I~vWdl~~~~~~~~~------------------~~~~~~~l~~~~--~d~~  441 (711)
                      .+.+|+||++++++.          .++.|.+||+.+.+.....                  .+++...+.+..  ....
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999998886          3678999998776543221                  112222333222  1233


Q ss_pred             EEE--EecCCCeeEEEeecccCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCC-----CeEEE----EEecCCCCEEEEE
Q psy14440        442 VRI--MDERNAETTRTLVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSLLL-----WRCLV----VYKGHGHPVWDIK  509 (711)
Q Consensus       442 i~i--~d~~~~~~~~~l~~h~~~V~~l~fspdg~-~L~s~s~Dg~V~iwdl~t-----~~~~~----~~~~h~~~V~~v~  509 (711)
                      +.+  +|..+   ...+.. .+.   ..+.++++ .+++.+.||.+.+.|+.+     ++...    .+.....+.   .
T Consensus       149 v~V~~iD~~t---v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~  218 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q  218 (368)
T ss_dssp             EEEEETTTEE---EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E
T ss_pred             EEEEEEchhh---ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c
Confidence            444  44433   222211 000   11223332 334445566666666655     22211    011112233   2


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCCc--eeEEeec----------CCCCeeEEEEcCCCCEEEEEEc-C--------CcE
Q psy14440        510 FSPHGYYFASAGHDRMARLWATDSYH--PLRLFVG----------HYSDVDCVQFHPNSNYVATGSS-D--------RTI  568 (711)
Q Consensus       510 ~sp~g~~l~sgs~Dg~i~lwd~~~~~--~~~~~~~----------h~~~V~~v~~sp~~~~latgs~-D--------g~I  568 (711)
                       ++++..++..+. +.+.+.|.....  .+..+..          .......+++++++++++++.. .        +.+
T Consensus       219 -~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~  296 (368)
T 1mda_H          219 -ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT  296 (368)
T ss_dssp             -ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred             -cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE
Confidence             455555555556 888888886532  1221110          0112233789999998887643 2        356


Q ss_pred             EEEECCCCcEEEEeeCCCCCeEEEEEecCCCE-EEEEe-CCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeC
Q psy14440        569 RLWDCVTGSHVRLLTGHKAPVYALSFSVCGRF-LASAG-GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSR  638 (711)
Q Consensus       569 ~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~-Lasgs-~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fsp  638 (711)
                      .++|+.+++.++.+.... ...+++|++||++ +++.. .++.|.++|+.+++.+..+..... .+.+++.+
T Consensus       297 ~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~  366 (368)
T 1mda_H          297 SSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN  366 (368)
T ss_dssp             EEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred             EEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence            699999999988876443 5789999999984 55666 589999999999999999975543 35666543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.77  E-value=2.1e-06  Score=86.01  Aligned_cols=190  Identities=14%  Similarity=0.096  Sum_probs=134.6

Q ss_pred             EEEeecccC--CEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeEEEEEecCCCC-EEEEEEcCCCCEEEEEECCCeEE
Q psy14440        453 TRTLVGHEG--PVRKLSFSPDRSLLLSCSQD--NTIRLWSLLLWRCLVVYKGHGHP-VWDIKFSPHGYYFASAGHDRMAR  527 (711)
Q Consensus       453 ~~~l~~h~~--~V~~l~fspdg~~L~s~s~D--g~V~iwdl~t~~~~~~~~~h~~~-V~~v~~sp~g~~l~sgs~Dg~i~  527 (711)
                      +.++ .|..  -..++.|+. +.++.+.+.+  +.|+++|+.+++.+......... --.+++. .++.++....++.+.
T Consensus        12 ~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           12 VKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGF   88 (243)
T ss_dssp             EEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEE
T ss_pred             EEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEE
Confidence            3444 4543  467999985 5555666665  48999999999999888643322 1234443 234555555789999


Q ss_pred             EEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCC-----CCeEEEEEecCCCEEE
Q psy14440        528 LWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHK-----APVYALSFSVCGRFLA  602 (711)
Q Consensus       528 lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~-----~~I~~la~spdg~~La  602 (711)
                      +||.++.+.+..+...... ..++  .++..|+.+..+++|.++|..+.+.++.+.-..     ..++.+.|. +|+..+
T Consensus        89 v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lya  164 (243)
T 3mbr_X           89 VYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLA  164 (243)
T ss_dssp             EEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEE
Confidence            9999999999888753332 3444  467777777778899999999999888776422     345677776 676555


Q ss_pred             EEeCCCcEEEEECCCCeEEEEeeCC-------------CCCEEEEEEeCCCCEEEEEeCC
Q psy14440        603 SAGGDGNVHMWDLSNGHLLTLLTGH-------------TDVVRALCFSRDGNILASSGQD  649 (711)
Q Consensus       603 sgs~Dg~I~iwDl~sg~~i~~l~~h-------------~~~V~sl~fspdg~~Lasgs~D  649 (711)
                      ....+..|.+.|.++|+.+..+...             ....+.|+|+++++.|+..|.-
T Consensus       165 nvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          165 NVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             EECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            5546789999999999999887621             1367899999988877776643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.76  E-value=1.2e-05  Score=83.65  Aligned_cols=226  Identities=9%  Similarity=-0.007  Sum_probs=141.8

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEE
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLS  467 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~  467 (711)
                      .....++|+++|+++++-..++.|..|+..+...                     .++.            ..+...+++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~---------------------~~~~------------~~~~p~gia   78 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ---------------------IHAT------------VEGKVSGLA   78 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE---------------------EEEE------------CSSEEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE---------------------EEEe------------CCCCceeEE
Confidence            5678999999999887777788888888653211                     1111            123578999


Q ss_pred             EcCCCCEEEEEeCC-C-eEEEEECCCCeEEEEEec-CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce-eEEee--
Q psy14440        468 FSPDRSLLLSCSQD-N-TIRLWSLLLWRCLVVYKG-HGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP-LRLFV--  541 (711)
Q Consensus       468 fspdg~~L~s~s~D-g-~V~iwdl~t~~~~~~~~~-h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~-~~~~~--  541 (711)
                      ++++|+++++.... + .|..++..+++....... .......++..+.+..+++...++.|.++|..++.. +....  
T Consensus        79 ~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~  158 (306)
T 2p4o_A           79 FTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPM  158 (306)
T ss_dssp             ECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGG
T ss_pred             EcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCc
Confidence            99999865555432 2 477777777765443332 223334555555554455544688899998875421 21111  


Q ss_pred             -------cCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCC-CcE--EEEeeCCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy14440        542 -------GHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVT-GSH--VRLLTGHKAPVYALSFSVCGRFLASAGGDGNV  610 (711)
Q Consensus       542 -------~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~-~~~--v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I  610 (711)
                             +.....+.+  ++++++|+++. ..+.|..||+.. ++.  ...+.. ......++++++|+++++....+.|
T Consensus       159 ~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V  235 (306)
T 2p4o_A          159 LARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSV  235 (306)
T ss_dssp             GSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred             cccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeE
Confidence                   112234455  77887666554 567899999874 321  122211 1345678999999887776677899


Q ss_pred             EEEECCCCeEEE--EeeCCCCCEEEEEEe---CCCCEEEEEeCCC
Q psy14440        611 HMWDLSNGHLLT--LLTGHTDVVRALCFS---RDGNILASSGQDC  650 (711)
Q Consensus       611 ~iwDl~sg~~i~--~l~~h~~~V~sl~fs---pdg~~Lasgs~Dg  650 (711)
                      .+||.. |+...  .+.......++++|.   ++++.|+.++..+
T Consensus       236 ~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          236 VRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             EEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            999975 66533  333333568999998   7888777766543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.75  E-value=1.8e-07  Score=105.00  Aligned_cols=186  Identities=13%  Similarity=0.123  Sum_probs=138.8

Q ss_pred             CCCEEEEEeC-CCeEEEEECCCCeEEEEEecC-CCCEEEEEE-c-CCCCEEEEEE------------------CCCeEEE
Q psy14440        471 DRSLLLSCSQ-DNTIRLWSLLLWRCLVVYKGH-GHPVWDIKF-S-PHGYYFASAG------------------HDRMARL  528 (711)
Q Consensus       471 dg~~L~s~s~-Dg~V~iwdl~t~~~~~~~~~h-~~~V~~v~~-s-p~g~~l~sgs------------------~Dg~i~l  528 (711)
                      ||++|+.+.. ++.|.+.|+.+.++...+.-- ......+++ + |++.++++++                  .++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            8888887765 557999999999998866532 355788888 5 8999998885                  2457999


Q ss_pred             EECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCC--------------------------------------cEEE
Q psy14440        529 WATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR--------------------------------------TIRL  570 (711)
Q Consensus       529 wd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg--------------------------------------~I~i  570 (711)
                      +|.++.+.+..+.--. .-..++++|+|+++++.+.+.                                      .|.+
T Consensus       180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            9999988777665322 457788999999999888543                                      4677


Q ss_pred             EECCC--CcE-EEEeeCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCe------------EEEEeeCCCCCEEEE
Q psy14440        571 WDCVT--GSH-VRLLTGHKAPVYALSFSVCGRFLASAG-GDGNVHMWDLSNGH------------LLTLLTGHTDVVRAL  634 (711)
Q Consensus       571 wD~~~--~~~-v~~~~~h~~~I~~la~spdg~~Lasgs-~Dg~I~iwDl~sg~------------~i~~l~~h~~~V~sl  634 (711)
                      .|..+  ++. ++.+... ....++.++|||+++++++ .+.+|.++|+.+.+            .+..+. -......+
T Consensus       259 ID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~  336 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT  336 (595)
T ss_dssp             EECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred             EeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence            77776  444 4444322 2456789999999888776 57899999998653            344443 23457899


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        635 CFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       635 ~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      +|+++|...++.-.|+.|.+||+..
T Consensus       337 aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          337 AFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EECCCCeEEEEEecCCcEEEEEhhH
Confidence            9999995556667899999999876

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.73  E-value=1.4e-05  Score=94.80  Aligned_cols=264  Identities=9%  Similarity=0.038  Sum_probs=172.2

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCc-----------------cccccccccCCcEEEEEecCC
Q psy14440        387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSD-----------------QLQDIEMECDDILVRIMDERN  449 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~-----------------~~~~l~~~~~d~~i~i~d~~~  449 (711)
                      ...|.++....+|.+.+....+| |.+|+..+.++.......                 ....+-+++.. -+.+++..+
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~  291 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGT  291 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTT
T ss_pred             CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCC
Confidence            45688888888877655443445 888888765544332210                 01122233333 466777766


Q ss_pred             CeeEEEeec-------ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-------CCCCEEEEEEcCCCC
Q psy14440        450 AETTRTLVG-------HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG-------HGHPVWDIKFSPHGY  515 (711)
Q Consensus       450 ~~~~~~l~~-------h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~-------h~~~V~~v~~sp~g~  515 (711)
                      .........       ....|.++....+|. |..|+.++-|..|+..+..... +..       ....|.++....+|+
T Consensus       292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~l~~~~V~~i~~d~~g~  369 (795)
T 4a2l_A          292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN-IRNIPYKNSLSDNVVSCIVEDKDKN  369 (795)
T ss_dssp             TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEE-ECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred             CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceE-EcCCCCCCCCCCCeeEEEEECCCCC
Confidence            654433221       235799999998886 6667777779999876544322 221       245699999988875


Q ss_pred             EEEEEECCCeEEEEECCCCceeEEeec--------CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee----
Q psy14440        516 YFASAGHDRMARLWATDSYHPLRLFVG--------HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT----  583 (711)
Q Consensus       516 ~l~sgs~Dg~i~lwd~~~~~~~~~~~~--------h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~----  583 (711)
                       +..|+.++-+..|+..++........        ....|.+++...+++.|.+|+.++-|.+||..+++......    
T Consensus       370 -lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~  448 (795)
T 4a2l_A          370 -LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQ  448 (795)
T ss_dssp             -EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSC
T ss_pred             -EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCC
Confidence             55677787899999887654332211        23568999998888867788887889999998876544322    


Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC------CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        584 GHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG------HTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       584 ~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~------h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      .+...|.++...++|++.+.. . +.|.+||..+++.......      ....|.++....+|++.+.. . +.|..||.
T Consensus       449 l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~  524 (795)
T 4a2l_A          449 LVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQ  524 (795)
T ss_dssp             CSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEE
T ss_pred             cCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeC
Confidence            134579999998888765544 4 4589999888765433211      23579999999998876654 3 56888886


Q ss_pred             CC
Q psy14440        658 AK  659 (711)
Q Consensus       658 ~~  659 (711)
                      .+
T Consensus       525 ~~  526 (795)
T 4a2l_A          525 EG  526 (795)
T ss_dssp             ET
T ss_pred             CC
Confidence            53

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.72  E-value=3.1e-07  Score=103.01  Aligned_cols=195  Identities=12%  Similarity=0.062  Sum_probs=138.1

Q ss_pred             CEEEEEE-c-CCCCEEEEEe------------------CCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE
Q psy14440        462 PVRKLSF-S-PDRSLLLSCS------------------QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG  521 (711)
Q Consensus       462 ~V~~l~f-s-pdg~~L~s~s------------------~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs  521 (711)
                      ....+++ + |+++++++++                  .++.|.++|..+.+.+..+..-. .-..++++++|+++++++
T Consensus       135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~  213 (595)
T 1fwx_A          135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTS  213 (595)
T ss_dssp             SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEE
T ss_pred             CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEe
Confidence            4667787 4 8888888874                  24679999999999888876423 345678999999999888


Q ss_pred             CCC--------------------------------------eEEEEECCC--Cce-eEEeecCCCCeeEEEEcCCCCEEE
Q psy14440        522 HDR--------------------------------------MARLWATDS--YHP-LRLFVGHYSDVDCVQFHPNSNYVA  560 (711)
Q Consensus       522 ~Dg--------------------------------------~i~lwd~~~--~~~-~~~~~~h~~~V~~v~~sp~~~~la  560 (711)
                      .+.                                      .|.+.|..+  ++. ++.+.. .....++.++|||++++
T Consensus       214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~  292 (595)
T 1fwx_A          214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLC  292 (595)
T ss_dssp             SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEE
T ss_pred             cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEE
Confidence            553                                      466777776  444 344432 23567899999999877


Q ss_pred             EEE-cCCcEEEEECCCCc------------EEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC----------
Q psy14440        561 TGS-SDRTIRLWDCVTGS------------HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN----------  617 (711)
Q Consensus       561 tgs-~Dg~I~iwD~~~~~------------~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s----------  617 (711)
                      +++ .+.+|.++|+.+.+            .+.... -......++|+++|....+.-.|+.|.+||+.+          
T Consensus       293 V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~  371 (595)
T 1fwx_A          293 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKV  371 (595)
T ss_dssp             EECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSC
T ss_pred             EeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhccccc
Confidence            766 57899999998653            233333 234578899999994444566789999999977          


Q ss_pred             CeEEEEeeCCCCCE-----EEEEEeCCCCEEEEEeC---CCc----------EEEEeCCC
Q psy14440        618 GHLLTLLTGHTDVV-----RALCFSRDGNILASSGQ---DCS----------VKLWDFAK  659 (711)
Q Consensus       618 g~~i~~l~~h~~~V-----~sl~fspdg~~Lasgs~---Dg~----------V~iWdl~~  659 (711)
                      .+.+..+..|-.+-     .++.+++||++|+++..   |+.          -.++|+..
T Consensus       372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~  431 (595)
T 1fwx_A          372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISG  431 (595)
T ss_dssp             CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSS
T ss_pred             ceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCC
Confidence            56788887665422     12245789999998764   332          17888853

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.72  E-value=4.7e-06  Score=84.96  Aligned_cols=198  Identities=7%  Similarity=-0.010  Sum_probs=133.2

Q ss_pred             cCCC--ceEEEEECCCCCEEEEEeC--CCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee-cc
Q psy14440        385 NARQ--QVTCAEISEDVSILAVGFS--ESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV-GH  459 (711)
Q Consensus       385 ~h~~--~V~~l~fs~dg~~LatG~~--dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h  459 (711)
                      .|..  ....++|++|+.+.++.+.  ++.|+++|+.++++.                               ..+. +.
T Consensus        16 p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~-------------------------------~~i~l~~   64 (266)
T 2iwa_A           16 PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE-------------------------------NIHKMDD   64 (266)
T ss_dssp             ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE-------------------------------EEEECCT
T ss_pred             ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE-------------------------------EEEecCC
Confidence            4553  3679999998765555443  578888888665543                               2221 11


Q ss_pred             cCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeE
Q psy14440        460 EGPVRKLSFSPDRSLLLSCS-QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLR  538 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s-~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~  538 (711)
                      ......+++.  +..|+.+. .++.|.++|..+++.+..+......-+.+  +++|+.++++..++++.++|..+.+.++
T Consensus        65 ~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~gl--t~Dg~~l~vs~gs~~l~viD~~t~~v~~  140 (266)
T 2iwa_A           65 SYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGL--ATDGKILYGSDGTSILYEIDPHTFKLIK  140 (266)
T ss_dssp             TCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEE--EECSSSEEEECSSSEEEEECTTTCCEEE
T ss_pred             CcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEE--EECCCEEEEECCCCeEEEEECCCCcEEE
Confidence            1122345554  44555554 57899999999999999886331222344  4567666666678999999999988877


Q ss_pred             EeecC-----CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC-------------CCCeEEEEEecCCCE
Q psy14440        539 LFVGH-----YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH-------------KAPVYALSFSVCGRF  600 (711)
Q Consensus       539 ~~~~h-----~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h-------------~~~I~~la~spdg~~  600 (711)
                      .+.-.     ...++.+.|. ++..++....++.|.+.|..+++.+..+.-.             ....+.|+|+++++.
T Consensus       141 ~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~  219 (266)
T 2iwa_A          141 KHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR  219 (266)
T ss_dssp             EEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE
T ss_pred             EEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCE
Confidence            76522     1246678888 6644444445789999999999998888632             135689999999875


Q ss_pred             EE-EEeCCCcEEEEECCCC
Q psy14440        601 LA-SAGGDGNVHMWDLSNG  618 (711)
Q Consensus       601 La-sgs~Dg~I~iwDl~sg  618 (711)
                      |+ ++...++|.+.++...
T Consensus       220 lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          220 IFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEETTCSEEEEEEEEEC
T ss_pred             EEEECCCCCeEEEEEEecc
Confidence            55 5556788888887543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.70  E-value=4.2e-06  Score=84.64  Aligned_cols=180  Identities=11%  Similarity=0.038  Sum_probs=130.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC-CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEe
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGH-PVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF  540 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~-~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~  540 (711)
                      -..++.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -... .-..+++.. ++.+++...++.+.+||.++.+.+..+
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            34788887 4566777788899999999999988776 3222 223355543 345555567899999999999999888


Q ss_pred             ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCC-----CCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q psy14440        541 VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHK-----APVYALSFSVCGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       541 ~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~-----~~I~~la~spdg~~Lasgs~Dg~I~iwDl  615 (711)
                      ...... ..++  +++..|+.+..+++|.++|..+.+.++.+.-..     ..++.+.|. +|+..+....++.|.+.|.
T Consensus       133 ~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp  208 (268)
T 3nok_A          133 RYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDP  208 (268)
T ss_dssp             ECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECT
T ss_pred             eCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeC
Confidence            753222 3444  467888888789999999999999888776322     245677887 7765555546789999999


Q ss_pred             CCCeEEEEeeCC-------------CCCEEEEEEeCCCCEEEEEeC
Q psy14440        616 SNGHLLTLLTGH-------------TDVVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       616 ~sg~~i~~l~~h-------------~~~V~sl~fspdg~~Lasgs~  648 (711)
                      ++|+.+..+...             .+..+.|+|+++++.|+..|.
T Consensus       209 ~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          209 ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            999998887632             146799999998766655553

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.70  E-value=3.5e-06  Score=96.05  Aligned_cols=228  Identities=10%  Similarity=-0.004  Sum_probs=147.7

Q ss_pred             ccccccCCcEEEEEecCCCeeEEEeeccc--C--CEEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCeEEEEEec
Q psy14440        432 DIEMECDDILVRIMDERNAETTRTLVGHE--G--PVRK-LSFSPDRSLLLSCSQ------DNTIRLWSLLLWRCLVVYKG  500 (711)
Q Consensus       432 ~l~~~~~d~~i~i~d~~~~~~~~~l~~h~--~--~V~~-l~fspdg~~L~s~s~------Dg~V~iwdl~t~~~~~~~~~  500 (711)
                      .+.+++.++.+..+|..+++.........  .  .+.+ .... ++ .+++++.      ++.|..+|..+++.+..+..
T Consensus       117 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            45566678889999999998877654221  0  1111 1111 34 5555554      79999999999999887764


Q ss_pred             CCCC-------------------------------------E-EEEEEcCCCCEEEEEECC----------------CeE
Q psy14440        501 HGHP-------------------------------------V-WDIKFSPHGYYFASAGHD----------------RMA  526 (711)
Q Consensus       501 h~~~-------------------------------------V-~~v~~sp~g~~l~sgs~D----------------g~i  526 (711)
                      ....                                     + ..+++.+....++.++.+                +.|
T Consensus       195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v  274 (571)
T 2ad6_A          195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence            2211                                     1 124556655566665532                369


Q ss_pred             EEEECCCCceeEEeecC--CC-------CeeEEEEcCCCC---EEEEEEcCCcEEEEECCCCcEEEEeeCCC--------
Q psy14440        527 RLWATDSYHPLRLFVGH--YS-------DVDCVQFHPNSN---YVATGSSDRTIRLWDCVTGSHVRLLTGHK--------  586 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~~h--~~-------~V~~v~~sp~~~---~latgs~Dg~I~iwD~~~~~~v~~~~~h~--------  586 (711)
                      ..+|.++++.+..+...  ..       ....+....+|+   .++.++.+|.+.++|..+|+.+..+....        
T Consensus       275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~  354 (571)
T 2ad6_A          275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKV  354 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             EEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccc
Confidence            99999999988776532  11       111122224674   57788889999999999999877654211        


Q ss_pred             -----CCe--------------------------EEEEEecCCCEEEEEe------------------------------
Q psy14440        587 -----APV--------------------------YALSFSVCGRFLASAG------------------------------  605 (711)
Q Consensus       587 -----~~I--------------------------~~la~spdg~~Lasgs------------------------------  605 (711)
                           .++                          ..++++|++.+|++.+                              
T Consensus       355 d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~  434 (571)
T 2ad6_A          355 DLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG  434 (571)
T ss_dssp             CTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred             cccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccC
Confidence                 111                          2357888877776653                              


Q ss_pred             -------CCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        606 -------GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       606 -------~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                             .+|.|..||+.+|+.+.++.... .+.+..+...+..++.++.||.|+.||..+.+.
T Consensus       435 ~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          435 PNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             TTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence                   35789999999999887775322 222333333566777799999999999987554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.70  E-value=3e-06  Score=96.57  Aligned_cols=245  Identities=13%  Similarity=0.070  Sum_probs=157.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeecc------------Cc--cccccccccC------CcEEEEEecCCCeeEEEeec
Q psy14440        399 VSILAVGFSESYIKLWSLVPQKLKAMKS------------SD--QLQDIEMECD------DILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       399 g~~LatG~~dg~I~vWdl~~~~~~~~~~------------~~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~l~~  458 (711)
                      +..|++++.|+.|..+|..++++.-...            ..  ....+.++..      ++.++.+|..+++.+..+..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            4567778888888888887665432110            00  1122333333      68999999999998876653


Q ss_pred             ccCC-------------------------------------E-EEEEEcCCCCEEEEEeCC----------------CeE
Q psy14440        459 HEGP-------------------------------------V-RKLSFSPDRSLLLSCSQD----------------NTI  484 (711)
Q Consensus       459 h~~~-------------------------------------V-~~l~fspdg~~L~s~s~D----------------g~V  484 (711)
                      ....                                     + ..+++.++...++.++.+                +.|
T Consensus       195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v  274 (571)
T 2ad6_A          195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence            2110                                     0 135666666677666532                369


Q ss_pred             EEEECCCCeEEEEEecCC----------CCEEEEEEcCCCC---EEEEEECCCeEEEEECCCCceeEEeecCC-------
Q psy14440        485 RLWSLLLWRCLVVYKGHG----------HPVWDIKFSPHGY---YFASAGHDRMARLWATDSYHPLRLFVGHY-------  544 (711)
Q Consensus       485 ~iwdl~t~~~~~~~~~h~----------~~V~~v~~sp~g~---~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~-------  544 (711)
                      ..+|..+++.+..++...          .++. +....+|+   .++.++.+|.++++|..+++.+..+....       
T Consensus       275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~  353 (571)
T 2ad6_A          275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK  353 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             EEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccccc
Confidence            999999999988886421          2222 22223663   57788899999999999998876554211       


Q ss_pred             ------CCe--------------------------eEEEEcCCCCEEEEEE-----------------------------
Q psy14440        545 ------SDV--------------------------DCVQFHPNSNYVATGS-----------------------------  563 (711)
Q Consensus       545 ------~~V--------------------------~~v~~sp~~~~latgs-----------------------------  563 (711)
                            ..+                          ..++++|+...+++.+                             
T Consensus       354 ~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  433 (571)
T 2ad6_A          354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP  433 (571)
T ss_dssp             ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             ccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceecc
Confidence                  011                          2357888777776654                             


Q ss_pred             --------cCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCC-EEEE
Q psy14440        564 --------SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDV-VRAL  634 (711)
Q Consensus       564 --------~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~-V~sl  634 (711)
                              .+|.|..||..+|+.+..+... ..+.+..+...+..++.++.||.|+.||.++|+.+..+...... -..+
T Consensus       434 ~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~  512 (571)
T 2ad6_A          434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPM  512 (571)
T ss_dssp             CTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred             CccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeE
Confidence                    2478999999999987776532 22333333345677888999999999999999999888743321 1223


Q ss_pred             EEeCCCCEEEE
Q psy14440        635 CFSRDGNILAS  645 (711)
Q Consensus       635 ~fspdg~~Las  645 (711)
                      .+..+|+.++.
T Consensus       513 ~~~~~G~~yv~  523 (571)
T 2ad6_A          513 TYSFKGKQYIG  523 (571)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEECCEEEEE
Confidence            45567775443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.61  E-value=5.5e-06  Score=94.67  Aligned_cols=244  Identities=11%  Similarity=0.069  Sum_probs=154.9

Q ss_pred             EEEEeCCCeEEEEeCCCCceeeec-c-----------Cc--ccccccccc------CCcEEEEEecCCCeeEEEeecccC
Q psy14440        402 LAVGFSESYIKLWSLVPQKLKAMK-S-----------SD--QLQDIEMEC------DDILVRIMDERNAETTRTLVGHEG  461 (711)
Q Consensus       402 LatG~~dg~I~vWdl~~~~~~~~~-~-----------~~--~~~~l~~~~------~d~~i~i~d~~~~~~~~~l~~h~~  461 (711)
                      |++++.|+.|..+|..++++.-.. .           ..  ....+.++.      .++.|+.+|..+++.+..+.....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~  203 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP  203 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence            777788888888888766543211 0           00  012233333      268999999999998876653211


Q ss_pred             C-------------------------------------E-EEEEEcCCCCEEEEEeCC----------------CeEEEE
Q psy14440        462 P-------------------------------------V-RKLSFSPDRSLLLSCSQD----------------NTIRLW  487 (711)
Q Consensus       462 ~-------------------------------------V-~~l~fspdg~~L~s~s~D----------------g~V~iw  487 (711)
                      .                                     + ..+++.++...++.++.+                +.|..+
T Consensus       204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Al  283 (599)
T 1w6s_A          204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR  283 (599)
T ss_dssp             HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE
T ss_pred             ccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEE
Confidence            1                                     0 134566677777777665                379999


Q ss_pred             ECCCCeEEEEEecCCCCEE---------EEEEc-CCC---CEEEEEECCCeEEEEECCCCceeEEeecCC----------
Q psy14440        488 SLLLWRCLVVYKGHGHPVW---------DIKFS-PHG---YYFASAGHDRMARLWATDSYHPLRLFVGHY----------  544 (711)
Q Consensus       488 dl~t~~~~~~~~~h~~~V~---------~v~~s-p~g---~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~----------  544 (711)
                      |..+++.+..++......|         -+... .+|   ..++.++.+|.++++|.++++.+.......          
T Consensus       284 d~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~  363 (599)
T 1w6s_A          284 DADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL  363 (599)
T ss_dssp             ETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred             eCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence            9999999988875332111         12222 456   467778899999999999998876543211          


Q ss_pred             ---CCe--------------------------eEEEEcCCCCEEEEEE--------------------------------
Q psy14440        545 ---SDV--------------------------DCVQFHPNSNYVATGS--------------------------------  563 (711)
Q Consensus       545 ---~~V--------------------------~~v~~sp~~~~latgs--------------------------------  563 (711)
                         ..+                          ..++++|+..++++..                                
T Consensus       364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~  443 (599)
T 1w6s_A          364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK  443 (599)
T ss_dssp             TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred             CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence               001                          2356677665554431                                


Q ss_pred             -------cCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCC-EEEEE
Q psy14440        564 -------SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDV-VRALC  635 (711)
Q Consensus       564 -------~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~-V~sl~  635 (711)
                             .+|.|..||+.+|+.+-.... ..++..-.+...|.+++.++.||.|+.||.++|+.+..++...+. ..-+.
T Consensus       444 ~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~  522 (599)
T 1w6s_A          444 GDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMT  522 (599)
T ss_dssp             SBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             CCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEE
Confidence                   347899999999998776642 112221122335778888999999999999999999888744321 12345


Q ss_pred             EeCCCCE-EEEE
Q psy14440        636 FSRDGNI-LASS  646 (711)
Q Consensus       636 fspdg~~-Lasg  646 (711)
                      +..+|+. +++.
T Consensus       523 y~~~G~qyv~~~  534 (599)
T 1w6s_A          523 YTHKGTQYVAIY  534 (599)
T ss_dssp             EEETTEEEEEEE
T ss_pred             EEeCCEEEEEEE
Confidence            5667773 4443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.59  E-value=7.9e-06  Score=82.58  Aligned_cols=186  Identities=10%  Similarity=0.080  Sum_probs=124.5

Q ss_pred             ecCCCc--eEEEEECCCCCEEEEEeCCC--eEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecc
Q psy14440        384 LNARQQ--VTCAEISEDVSILAVGFSES--YIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       384 ~~h~~~--V~~l~fs~dg~~LatG~~dg--~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h  459 (711)
                      ..|...  ...+.|+ ++.+..+++.+|  .|+++|+.++++.                               ..+.-.
T Consensus        37 ~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~-------------------------------~~~~l~   84 (262)
T 3nol_A           37 YPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL-------------------------------QQIELG   84 (262)
T ss_dssp             EECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE-------------------------------EEEECC
T ss_pred             ecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE-------------------------------EEEecC
Confidence            345544  4788998 677777776665  7888888665543                               222211


Q ss_pred             cCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeE
Q psy14440        460 EGPVRKLSFSPDRSLLLSCS-QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLR  538 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s-~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~  538 (711)
                       ..........+++.|+... .++.+.+||..+.+.+.++.... .=|.++  +++..++.+..++.|.++|..+.+.++
T Consensus        85 -~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~  160 (262)
T 3nol_A           85 -KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVR  160 (262)
T ss_dssp             -TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEE
T ss_pred             -CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEE
Confidence             1222222222355555554 57899999999999999887533 224455  456666666667889999999998887


Q ss_pred             EeecC--C---CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC------------CCCeEEEEEecCCCEE
Q psy14440        539 LFVGH--Y---SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH------------KAPVYALSFSVCGRFL  601 (711)
Q Consensus       539 ~~~~h--~---~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h------------~~~I~~la~spdg~~L  601 (711)
                      .+.-.  .   ..++.+.|. +|...+..-.+..|.+.|..+|+.+..+...            ....+.|||+|+++.|
T Consensus       161 ~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l  239 (262)
T 3nol_A          161 TITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRL  239 (262)
T ss_dssp             EEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred             EEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence            76532  1   334557776 6654444445889999999999998887632            1356899999998888


Q ss_pred             EEEeC
Q psy14440        602 ASAGG  606 (711)
Q Consensus       602 asgs~  606 (711)
                      ++.+.
T Consensus       240 fVTGK  244 (262)
T 3nol_A          240 FVTGK  244 (262)
T ss_dssp             EEEET
T ss_pred             EEECC
Confidence            77765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.57  E-value=1e-05  Score=92.43  Aligned_cols=228  Identities=11%  Similarity=-0.004  Sum_probs=147.2

Q ss_pred             cccccCCcEEEEEecCCCeeEEEeecccC----CEEE-EEEcCCCCEEEEEe------CCCeEEEEECCCCeEEEEEecC
Q psy14440        433 IEMECDDILVRIMDERNAETTRTLVGHEG----PVRK-LSFSPDRSLLLSCS------QDNTIRLWSLLLWRCLVVYKGH  501 (711)
Q Consensus       433 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~----~V~~-l~fspdg~~L~s~s------~Dg~V~iwdl~t~~~~~~~~~h  501 (711)
                      +.+++.++.+..+|..+++.+........    .+++ ... .++ .+++++      .+|.|+.+|..+++.+..+...
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            55666788899999999998776543210    1111 111 144 455554      3899999999999998877643


Q ss_pred             CCC-------------------------------------EE-EEEEcCCCCEEEEEECC----------------CeEE
Q psy14440        502 GHP-------------------------------------VW-DIKFSPHGYYFASAGHD----------------RMAR  527 (711)
Q Consensus       502 ~~~-------------------------------------V~-~v~~sp~g~~l~sgs~D----------------g~i~  527 (711)
                      ...                                     +| .+++.+....++.++.+                +.|.
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~  281 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence            211                                     11 24555666677777655                3899


Q ss_pred             EEECCCCceeEEeecCCCCe---------eEEEEc-CCC---CEEEEEEcCCcEEEEECCCCcEEEEeeCCC--------
Q psy14440        528 LWATDSYHPLRLFVGHYSDV---------DCVQFH-PNS---NYVATGSSDRTIRLWDCVTGSHVRLLTGHK--------  586 (711)
Q Consensus       528 lwd~~~~~~~~~~~~h~~~V---------~~v~~s-p~~---~~latgs~Dg~I~iwD~~~~~~v~~~~~h~--------  586 (711)
                      .+|.++++.+..+.....+.         .-+... .+|   ..++.++.+|.+.++|..+|+.+....-..        
T Consensus       282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~  361 (599)
T 1w6s_A          282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSV  361 (599)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             EEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccc
Confidence            99999999887766432211         112222 467   467778899999999999999876654211        


Q ss_pred             ----C-Ce--------------------------EEEEEecCCCEEEEEe------------------------------
Q psy14440        587 ----A-PV--------------------------YALSFSVCGRFLASAG------------------------------  605 (711)
Q Consensus       587 ----~-~I--------------------------~~la~spdg~~Lasgs------------------------------  605 (711)
                          + ++                          ..++++|+..++++..                              
T Consensus       362 ~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~  441 (599)
T 1w6s_A          362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPG  441 (599)
T ss_dssp             CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred             ccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccC
Confidence                0 11                          2356777766655431                              


Q ss_pred             ---------CCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCc
Q psy14440        606 ---------GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDE  663 (711)
Q Consensus       606 ---------~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~  663 (711)
                               .+|.|..||+.+|+.+-..... ..+.+-.+...+.+++.++.||.|+.||.++....
T Consensus       442 p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          442 PKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (599)
T ss_dssp             TTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence                     3478999999999988776521 11111122335677888999999999999886654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.57  E-value=1.8e-05  Score=82.82  Aligned_cols=190  Identities=13%  Similarity=0.043  Sum_probs=125.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-C-------------------CCCEEEEEEcC-CCCEEEEE
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG-H-------------------GHPVWDIKFSP-HGYYFASA  520 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~-h-------------------~~~V~~v~~sp-~g~~l~sg  520 (711)
                      ...+++|++++++++++..++.|..|+..++.... +.. .                   ......+++.+ +| .|+++
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIV   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEE
Confidence            35678899999888888889999999987654332 221 0                   12478899997 55 45555


Q ss_pred             ECCCeEEEEECCCCceeEEeec-----CCCCeeEEEEcC-CCCEEEEEEc-----------------CCcEEEEECCCCc
Q psy14440        521 GHDRMARLWATDSYHPLRLFVG-----HYSDVDCVQFHP-NSNYVATGSS-----------------DRTIRLWDCVTGS  577 (711)
Q Consensus       521 s~Dg~i~lwd~~~~~~~~~~~~-----h~~~V~~v~~sp-~~~~latgs~-----------------Dg~I~iwD~~~~~  577 (711)
                      ...+.+..+|.+++. +..+..     .......+++.+ +|+..++...                 ++.|..||..+++
T Consensus        98 d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             ETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             ECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            555668888877543 222221     123467899999 8987766432                 3678899987776


Q ss_pred             EEEEeeCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCC---eEEEEeeCCCCCEEEEEEeCCCCEEEEEeC-----
Q psy14440        578 HVRLLTGHKAPVYALSFSVCGRFLASA-GGDGNVHMWDLSNG---HLLTLLTGHTDVVRALCFSRDGNILASSGQ-----  648 (711)
Q Consensus       578 ~v~~~~~h~~~I~~la~spdg~~Lasg-s~Dg~I~iwDl~sg---~~i~~l~~h~~~V~sl~fspdg~~Lasgs~-----  648 (711)
                      ...... .-...+.|+|+++|++|+.+ +.++.|.+|++...   .. ..+....+ ...+++.++|+++++...     
T Consensus       177 ~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~-~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          177 TTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA-EVLVKIPN-PGNIKRNADGHFWVSSSEELDGN  253 (322)
T ss_dssp             EEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCE-EEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred             EEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCcc-ceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence            433322 22345679999999977666 45689999998742   21 11111223 788999999997777654     


Q ss_pred             -----CCcEEEEeC
Q psy14440        649 -----DCSVKLWDF  657 (711)
Q Consensus       649 -----Dg~V~iWdl  657 (711)
                           .+.|..+|-
T Consensus       254 ~~~~~~~~v~~~d~  267 (322)
T 2fp8_A          254 MHGRVDPKGIKFDE  267 (322)
T ss_dssp             TTSCEEEEEEEECT
T ss_pred             ccCCCccEEEEECC
Confidence                 355666664

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.57  E-value=3.2e-05  Score=88.21  Aligned_cols=244  Identities=14%  Similarity=0.100  Sum_probs=154.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeec------------cCc--ccc------cccccc------CCcEEEEEecCCCee
Q psy14440        399 VSILAVGFSESYIKLWSLVPQKLKAMK------------SSD--QLQ------DIEMEC------DDILVRIMDERNAET  452 (711)
Q Consensus       399 g~~LatG~~dg~I~vWdl~~~~~~~~~------------~~~--~~~------~l~~~~------~d~~i~i~d~~~~~~  452 (711)
                      +..|++++.|+.|..+|..++++.-..            ..+  ...      .+.++.      .++.++.+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            456777888888888888766543110            000  011      333333      267899999999888


Q ss_pred             EEEeecccCCE-----------------------------------------EEEEEcCCCCEEEEEeC-----------
Q psy14440        453 TRTLVGHEGPV-----------------------------------------RKLSFSPDRSLLLSCSQ-----------  480 (711)
Q Consensus       453 ~~~l~~h~~~V-----------------------------------------~~l~fspdg~~L~s~s~-----------  480 (711)
                      +.........+                                         ..++++++...++.++.           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            76543211000                                         13456666677776653           


Q ss_pred             ---------C----CeEEEEECCCCeEEEEEec--CC--------CCEEEEEEc-CCCC---EEEEEECCCeEEEEECCC
Q psy14440        481 ---------D----NTIRLWSLLLWRCLVVYKG--HG--------HPVWDIKFS-PHGY---YFASAGHDRMARLWATDS  533 (711)
Q Consensus       481 ---------D----g~V~iwdl~t~~~~~~~~~--h~--------~~V~~v~~s-p~g~---~l~sgs~Dg~i~lwd~~~  533 (711)
                               |    +.|..+|..+++.+..++.  |.        .++. +... .+|+   .++.++.+|.++++|.++
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence                     2    6899999999999988864  21        1222 1221 3564   788899999999999999


Q ss_pred             CceeEEeecCCC-------------C--------------------------------eeEEEEcCCCCEEEEEE-----
Q psy14440        534 YHPLRLFVGHYS-------------D--------------------------------VDCVQFHPNSNYVATGS-----  563 (711)
Q Consensus       534 ~~~~~~~~~h~~-------------~--------------------------------V~~v~~sp~~~~latgs-----  563 (711)
                      ++.+..+.....             .                                -..++++|+...+++..     
T Consensus       356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~  435 (582)
T 1flg_A          356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE  435 (582)
T ss_dssp             CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred             CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence            988765543210             0                                01345666555544432     


Q ss_pred             ----------------------------cCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q psy14440        564 ----------------------------SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       564 ----------------------------~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl  615 (711)
                                                  .+|.|..||+.+|+.+-.+.... .+..-.....|.+++.|+.||.|+.||.
T Consensus       436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~  514 (582)
T 1flg_A          436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDA  514 (582)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred             eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEEC
Confidence                                        25789999999999876665322 2222222234678888999999999999


Q ss_pred             CCCeEEEEeeCCCCCE-EEEEEeCCCCEEE
Q psy14440        616 SNGHLLTLLTGHTDVV-RALCFSRDGNILA  644 (711)
Q Consensus       616 ~sg~~i~~l~~h~~~V-~sl~fspdg~~La  644 (711)
                      ++|+.+.+++...+.+ .-+.|..+|+..+
T Consensus       515 ~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          515 KSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             TTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence            9999999887544322 2256667887433

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.56  E-value=3.8e-05  Score=87.64  Aligned_cols=230  Identities=10%  Similarity=0.005  Sum_probs=144.9

Q ss_pred             ccccccCCcEEEEEecCCCeeEEEeecccC----CEE-EEEEcC---CCC-EEEEEe------CCCeEEEEECCCCeEEE
Q psy14440        432 DIEMECDDILVRIMDERNAETTRTLVGHEG----PVR-KLSFSP---DRS-LLLSCS------QDNTIRLWSLLLWRCLV  496 (711)
Q Consensus       432 ~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~----~V~-~l~fsp---dg~-~L~s~s------~Dg~V~iwdl~t~~~~~  496 (711)
                      .+.+++.++.+..+|..+++..........    .+. +.....   +++ .+++++      .+|.|+.+|..+++.+.
T Consensus       119 ~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W  198 (582)
T 1flg_A          119 KVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIW  198 (582)
T ss_dssp             EEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEE
T ss_pred             EEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEe
Confidence            345566788899999999998876653321    111 111111   233 566654      37899999999999887


Q ss_pred             EEecCCCC----------------------------------------E-EEEEEcCCCCEEEEEEC-------------
Q psy14440        497 VYKGHGHP----------------------------------------V-WDIKFSPHGYYFASAGH-------------  522 (711)
Q Consensus       497 ~~~~h~~~----------------------------------------V-~~v~~sp~g~~l~sgs~-------------  522 (711)
                      ........                                        + ..+++.+....++.++.             
T Consensus       199 ~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~  278 (582)
T 1flg_A          199 MRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAK  278 (582)
T ss_dssp             EEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCT
T ss_pred             ecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccC
Confidence            66432110                                        0 12455565666666653             


Q ss_pred             -------C----CeEEEEECCCCceeEEeec--CCC-------CeeEEEEc-CCCC---EEEEEEcCCcEEEEECCCCcE
Q psy14440        523 -------D----RMARLWATDSYHPLRLFVG--HYS-------DVDCVQFH-PNSN---YVATGSSDRTIRLWDCVTGSH  578 (711)
Q Consensus       523 -------D----g~i~lwd~~~~~~~~~~~~--h~~-------~V~~v~~s-p~~~---~latgs~Dg~I~iwD~~~~~~  578 (711)
                             |    +.|..+|.++++.+..+..  |..       ...-+... .+|+   .++.++.+|.++++|..+|+.
T Consensus       279 gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  358 (582)
T 1flg_A          279 GGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL  358 (582)
T ss_dssp             TSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             CCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence                   2    6899999999998887753  221       11112221 4664   788899999999999999998


Q ss_pred             EEEeeCCC------------CC---------------------------------eEEEEEecCCCEEEEEe--------
Q psy14440        579 VRLLTGHK------------AP---------------------------------VYALSFSVCGRFLASAG--------  605 (711)
Q Consensus       579 v~~~~~h~------------~~---------------------------------I~~la~spdg~~Lasgs--------  605 (711)
                      +..+....            +.                                 -..++++|+...+++..        
T Consensus       359 lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~  438 (582)
T 1flg_A          359 QNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYW  438 (582)
T ss_dssp             EEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEE
T ss_pred             ecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeee
Confidence            86654321            00                                 01245666555544432        


Q ss_pred             -------------------------CCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        606 -------------------------GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       606 -------------------------~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                                               .+|.|..||+.+|+.+-+...+. .+.+-.....+.+++.|+.||.|+.||.++.
T Consensus       439 ~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG  517 (582)
T 1flg_A          439 TEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG  517 (582)
T ss_dssp             ECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             cccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCC
Confidence                                     25889999999999887765332 2222122234678888999999999999875


Q ss_pred             CC
Q psy14440        661 SD  662 (711)
Q Consensus       661 ~~  662 (711)
                      +.
T Consensus       518 ~~  519 (582)
T 1flg_A          518 KE  519 (582)
T ss_dssp             CE
T ss_pred             CE
Confidence            54

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.55  E-value=4.4e-05  Score=77.31  Aligned_cols=200  Identities=10%  Similarity=0.099  Sum_probs=137.0

Q ss_pred             EEeecccCCEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeEEEEEec-CCCCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy14440        454 RTLVGHEGPVRKLSFSPDRSLLLS-CSQDNTIRLWSLLLWRCLVVYKG-HGHPVWDIKFSPHGYYFASAGHDRMARLWAT  531 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~~L~s-~s~Dg~V~iwdl~t~~~~~~~~~-h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~  531 (711)
                      +.+.+-.+.+.+++|++++..|++ ...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            355566678999999998776654 6678889999998 887777742 2356788999988877777667788999987


Q ss_pred             CCCce---eEEee------cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC---CCcEEEEee-------CCCCCeEEE
Q psy14440        532 DSYHP---LRLFV------GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV---TGSHVRLLT-------GHKAPVYAL  592 (711)
Q Consensus       532 ~~~~~---~~~~~------~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~---~~~~v~~~~-------~h~~~I~~l  592 (711)
                      .....   +....      ........++|++.++.|+++.......||.+.   .+..+..+.       .+...+.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65442   22221      134457899999999888888776555565553   112223221       133467899


Q ss_pred             EEecC-CCEEEEEeCCCcEEEEECCCCeEEEEeeCCC---------CCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        593 SFSVC-GRFLASAGGDGNVHMWDLSNGHLLTLLTGHT---------DVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       593 a~spd-g~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~---------~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      +++|. |++++.....+.|.++|.. |+.+..+.-..         ..-..|+|.++|++.++ ++-+.++++.
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            99985 5566666777889999964 66666654221         25689999999985555 6666555543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.53  E-value=2.8e-06  Score=98.52  Aligned_cols=199  Identities=9%  Similarity=0.033  Sum_probs=116.0

Q ss_pred             CCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeEEEEEecCC-CCEEEEEEcCCCCEEEEEE-CC-----CeEEEEECC
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQ-DNTIRLWSLLLWRCLVVYKGHG-HPVWDIKFSPHGYYFASAG-HD-----RMARLWATD  532 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~-Dg~V~iwdl~t~~~~~~~~~h~-~~V~~v~~sp~g~~l~sgs-~D-----g~i~lwd~~  532 (711)
                      ....++++..+++.++.|+. ++.+.+||..+.+-...-..+. ..-.+++..++|+.++.|+ .+     ..+.+||..
T Consensus       243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            33456778889999999884 4589999987654332211111 1123455667899999998 44     578999998


Q ss_pred             CCceeEEe----ecCCCCeeEEEEcCCCCEEEEEEcC---------CcEEEEECCCCcEEEEeeCCC---------CCeE
Q psy14440        533 SYHPLRLF----VGHYSDVDCVQFHPNSNYVATGSSD---------RTIRLWDCVTGSHVRLLTGHK---------APVY  590 (711)
Q Consensus       533 ~~~~~~~~----~~h~~~V~~v~~sp~~~~latgs~D---------g~I~iwD~~~~~~v~~~~~h~---------~~I~  590 (711)
                      +..-...-    ......-....+..++..++.|+.+         ..+..||..+.........+.         ..-.
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~  402 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN  402 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred             CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence            75422210    0000000001122344555555444         356788888776443332221         1234


Q ss_pred             EEEEec-CCCEEEEEeCCC-----------cEEEEECCCCeEEEEe--eCCCCCE-EEEEEeCCCCEEEEEeCC------
Q psy14440        591 ALSFSV-CGRFLASAGGDG-----------NVHMWDLSNGHLLTLL--TGHTDVV-RALCFSRDGNILASSGQD------  649 (711)
Q Consensus       591 ~la~sp-dg~~Lasgs~Dg-----------~I~iwDl~sg~~i~~l--~~h~~~V-~sl~fspdg~~Lasgs~D------  649 (711)
                      ++.|.. ++++++.|+.++           .|.+||..+.+-....  ..+.... .+.+..++|++++.||.+      
T Consensus       403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~  482 (656)
T 1k3i_A          403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE  482 (656)
T ss_dssp             EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred             eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcC
Confidence            555543 788888887543           6888998877654433  2222222 344567899999999865      


Q ss_pred             -----CcEEEEeCCC
Q psy14440        650 -----CSVKLWDFAK  659 (711)
Q Consensus       650 -----g~V~iWdl~~  659 (711)
                           ..+.+||..+
T Consensus       483 ~~~~~~~v~~ydp~t  497 (656)
T 1k3i_A          483 DSTPVFTPEIYVPEQ  497 (656)
T ss_dssp             CCSBCCCCEEEEGGG
T ss_pred             CCCcccceEEEcCCC
Confidence                 4678888754

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.51  E-value=0.00011  Score=86.76  Aligned_cols=264  Identities=9%  Similarity=0.007  Sum_probs=161.1

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCc-----------------cccccccccCCcEEEEEecCCC
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSD-----------------QLQDIEMECDDILVRIMDERNA  450 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~-----------------~~~~l~~~~~d~~i~i~d~~~~  450 (711)
                      ..|.++....+|.+.+. +.+ -+.+|+..+.++.......                 ....+-++...+-+.+++..+.
T Consensus       211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~  288 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQN  288 (781)
T ss_dssp             SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC
T ss_pred             CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCC
Confidence            56899999888876654 444 4888988765544332111                 1112223333244566666554


Q ss_pred             eeEEEee--------------cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe---------cCCCCEEE
Q psy14440        451 ETTRTLV--------------GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK---------GHGHPVWD  507 (711)
Q Consensus       451 ~~~~~l~--------------~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~---------~h~~~V~~  507 (711)
                      .......              -....|.++....+|. |..|+.++-|..|+..+........         .....|.+
T Consensus       289 ~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~  367 (781)
T 3v9f_A          289 QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSS  367 (781)
T ss_dssp             ---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEE
T ss_pred             eeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEE
Confidence            4322111              1345799999988875 6667766679999987544322110         12356999


Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCceeEEe---ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee-
Q psy14440        508 IKFSPHGYYFASAGHDRMARLWATDSYHPLRLF---VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT-  583 (711)
Q Consensus       508 v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~---~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~-  583 (711)
                      +....+|. +..|+.++-+.+|+..++......   ......|.++....+++ |.+|+.++-|..||..+++...... 
T Consensus       368 i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~  445 (781)
T 3v9f_A          368 VCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELE  445 (781)
T ss_dssp             EEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCST
T ss_pred             EEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccC
Confidence            99888775 556676667888987654322111   12345688998887765 4557776779999988776433221 


Q ss_pred             -CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCC-----CCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        584 -GHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGH-----TDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       584 -~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h-----~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                       .....|.++....+|++. .|+. +.|.+||..+++........     ...|.++....+|++.+ |+.++.|..||.
T Consensus       446 ~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~  522 (781)
T 3v9f_A          446 KNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTP  522 (781)
T ss_dssp             TTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECT
T ss_pred             CCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeC
Confidence             134679999988888654 4555 56899998877654332222     35799999998888665 444445777876


Q ss_pred             CC
Q psy14440        658 AK  659 (711)
Q Consensus       658 ~~  659 (711)
                      ..
T Consensus       523 ~~  524 (781)
T 3v9f_A          523 DM  524 (781)
T ss_dssp             TC
T ss_pred             CC
Confidence            53

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.51  E-value=9.2e-06  Score=95.74  Aligned_cols=236  Identities=9%  Similarity=0.009  Sum_probs=131.8

Q ss_pred             ceEEEEEC-CCCCEEEEEeCC-C----eEEEEeCCCC-ceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccC
Q psy14440        389 QVTCAEIS-EDVSILAVGFSE-S----YIKLWSLVPQ-KLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEG  461 (711)
Q Consensus       389 ~V~~l~fs-~dg~~LatG~~d-g----~I~vWdl~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~  461 (711)
                      .+...+|| |||++||.+... |    .|+++++.++ +...                           .   .+.   .
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---------------------------~---~~~---~  221 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---------------------------D---KVS---G  221 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---------------------------C---CEE---E
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---------------------------c---ccc---C
Confidence            57788999 999988865442 2    4777777654 3100                           0   000   1


Q ss_pred             CEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCe--EEEEEec-CCCCEEEEEEcCCCCEEEEEEC---CCeEEEEE
Q psy14440        462 PVRKLSFSPDRSLLLSCSQD-----NTIRLWSLLLWR--CLVVYKG-HGHPVWDIKFSPHGYYFASAGH---DRMARLWA  530 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~D-----g~V~iwdl~t~~--~~~~~~~-h~~~V~~v~~sp~g~~l~sgs~---Dg~i~lwd  530 (711)
                      ...+++|++||+.|+..+.|     ..|.++++.++.  ....+.. ......++.|+++|++|+..+.   ...|+++|
T Consensus       222 ~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d  301 (751)
T 2xe4_A          222 TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLD  301 (751)
T ss_dssp             ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred             ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEE
Confidence            12467899999988877665     358888887753  2334432 3345678899999998887663   34688889


Q ss_pred             CCCCc-ee--EEe-ecCCCCeeEEEEcCCCCEEEEEE-cC----CcEEEEECCCCcEEEE-eeCCCC--CeEEEEEecCC
Q psy14440        531 TDSYH-PL--RLF-VGHYSDVDCVQFHPNSNYVATGS-SD----RTIRLWDCVTGSHVRL-LTGHKA--PVYALSFSVCG  598 (711)
Q Consensus       531 ~~~~~-~~--~~~-~~h~~~V~~v~~sp~~~~latgs-~D----g~I~iwD~~~~~~v~~-~~~h~~--~I~~la~spdg  598 (711)
                      +.++. ..  +.+ .+.......+.|+. |..|+..+ .+    ..|..+|+.++..... +..+..  .+..+++. .+
T Consensus       302 ~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~  379 (751)
T 2xe4_A          302 LRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SN  379 (751)
T ss_dssp             SSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SS
T ss_pred             CCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CC
Confidence            88752 22  333 33444555666554 55554444 33    2577778765322222 333433  34455554 23


Q ss_pred             CEEEEEeCCCc--EEEEEC-------CCCeEEEEeeCCC-CCEEEEEE----eCCCC-EEEEEeCC---CcEEEEeCCC
Q psy14440        599 RFLASAGGDGN--VHMWDL-------SNGHLLTLLTGHT-DVVRALCF----SRDGN-ILASSGQD---CSVKLWDFAK  659 (711)
Q Consensus       599 ~~Lasgs~Dg~--I~iwDl-------~sg~~i~~l~~h~-~~V~sl~f----spdg~-~Lasgs~D---g~V~iWdl~~  659 (711)
                      .++++...+|.  |.++|+       .+++.+..+.... ..+..+.+    +.++. ++++.+..   +.+..+|+.+
T Consensus       380 ~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~  458 (751)
T 2xe4_A          380 YLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQD  458 (751)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTT
T ss_pred             EEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence            44556666774  566675       3444133332111 22334433    34554 45554433   3566777654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.51  E-value=8.1e-05  Score=79.21  Aligned_cols=197  Identities=11%  Similarity=0.003  Sum_probs=130.3

Q ss_pred             cCCEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCcee
Q psy14440        460 EGPVRKLSFSPDRSLLLSC-SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH-GYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~-s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~-g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      ...+.+++|++.+..|+.+ ...+.|..+++..................+++.+. ++.+++-...+.|.+.+.+.....
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  151 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence            3457899999766666554 45788999998866544444333344567888874 445556666789999999865544


Q ss_pred             EEeecCCCCeeEEEEcCCCCEEEEEE-cC-CcEEEEECCCCcEEEEe-eCCCCCeEEEEEecCCCEEEEEe-CCCcEEEE
Q psy14440        538 RLFVGHYSDVDCVQFHPNSNYVATGS-SD-RTIRLWDCVTGSHVRLL-TGHKAPVYALSFSVCGRFLASAG-GDGNVHMW  613 (711)
Q Consensus       538 ~~~~~h~~~V~~v~~sp~~~~latgs-~D-g~I~iwD~~~~~~v~~~-~~h~~~I~~la~spdg~~Lasgs-~Dg~I~iw  613 (711)
                      ..+.........++++|.+.+|+... .. +.|..+++.... ...+ ...-...+.|++++++..|+.+. ..+.|..+
T Consensus       152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~  230 (349)
T 3v64_C          152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  230 (349)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence            44444556678999999666655544 34 788888876443 3333 23344578999998777666654 45789999


Q ss_pred             ECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        614 DLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       614 Dl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      |+........+........+|++. ++.++++-...+.|..+|-.
T Consensus       231 ~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~  274 (349)
T 3v64_C          231 NLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKF  274 (349)
T ss_dssp             ETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred             eCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEcc
Confidence            986543333343334567788884 55566666667788888743

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.51  E-value=0.0001  Score=76.66  Aligned_cols=202  Identities=13%  Similarity=0.063  Sum_probs=126.7

Q ss_pred             eeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC--CeEEE
Q psy14440        451 ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD--RMARL  528 (711)
Q Consensus       451 ~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D--g~i~l  528 (711)
                      +.+..+... ....+++|+++++.+++...++.|..||.... ....+. .......+++.++|+++++....  ..|..
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~   99 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS   99 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence            344444332 45789999999987777667899999998753 333333 34568899999999866665443  24666


Q ss_pred             EECCCCceeEEeec-CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEee---------CCCCCeEEEEEecC
Q psy14440        529 WATDSYHPLRLFVG-HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH-VRLLT---------GHKAPVYALSFSVC  597 (711)
Q Consensus       529 wd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~-v~~~~---------~h~~~I~~la~spd  597 (711)
                      ++..+++....... .......++..+++..+++...++.|.++|..+++. +....         +.-...+.|  +++
T Consensus       100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d  177 (306)
T 2p4o_A          100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF  177 (306)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred             EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence            77777765433221 222334555555554455544688999999876532 22111         111234555  788


Q ss_pred             CCEEEEEe-CCCcEEEEECCC-CeE--EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        598 GRFLASAG-GDGNVHMWDLSN-GHL--LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       598 g~~Lasgs-~Dg~I~iwDl~s-g~~--i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      |++|+.+. ..++|..||+.. ++.  ...+.. ......++++++|+++++....+.|.++|..
T Consensus       178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            88776554 567999999864 331  111111 1234678999999988877778899999854

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.48  E-value=7.6e-05  Score=88.21  Aligned_cols=265  Identities=9%  Similarity=0.004  Sum_probs=161.6

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeecc-------C-----------------ccccccccccCCcEE
Q psy14440        387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKS-------S-----------------DQLQDIEMECDDILV  442 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~-------~-----------------~~~~~l~~~~~d~~i  442 (711)
                      ...|.++....+|.+. .|+..+-|.+++..+..+.....       .                 +....+=++..++-+
T Consensus       257 ~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl  335 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGI  335 (781)
T ss_dssp             CCCEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCE
T ss_pred             CceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeE
Confidence            3569999998888654 46554458888876654332211       0                 001112233334445


Q ss_pred             EEEecCCCeeEEEee---------cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE---ecCCCCEEEEEE
Q psy14440        443 RIMDERNAETTRTLV---------GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY---KGHGHPVWDIKF  510 (711)
Q Consensus       443 ~i~d~~~~~~~~~l~---------~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~---~~h~~~V~~v~~  510 (711)
                      ..++..+........         .....|.++....+|. |..|+.++-|.+|+..++......   ......|+++..
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  414 (781)
T 3v9f_A          336 NFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLK  414 (781)
T ss_dssp             EEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEE
T ss_pred             EEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEE
Confidence            666655443322211         1235699999887775 556666666999998754432211   123467999998


Q ss_pred             cCCCCEEEEEECCCeEEEEECCCCceeEEee--cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC---
Q psy14440        511 SPHGYYFASAGHDRMARLWATDSYHPLRLFV--GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH---  585 (711)
Q Consensus       511 sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h---  585 (711)
                      ..+|. |..|+.++-+..++..+++......  .....|.++....+++ |..|+. +-|..||..+++........   
T Consensus       415 d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~  491 (781)
T 3v9f_A          415 DSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQ  491 (781)
T ss_dssp             CTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSS
T ss_pred             CCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccc
Confidence            87775 4457777778889887665333221  1346788998887765 555665 56899998877654433222   


Q ss_pred             --CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee-C---CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        586 --KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLT-G---HTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       586 --~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~-~---h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                        ...|.+++...+|++.+ |+.++-|..||..+++.. .+. .   ....|.++....+|++.++. .+|.|..||..+
T Consensus       492 ~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~  568 (781)
T 3v9f_A          492 LLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARN  568 (781)
T ss_dssp             CSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTT
T ss_pred             cccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCC
Confidence              46799999999887654 444445888998776543 332 1   13568999998888866644 466558888654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.48  E-value=0.00026  Score=74.01  Aligned_cols=199  Identities=10%  Similarity=-0.051  Sum_probs=127.9

Q ss_pred             cCCEEEEEEcCCCCEEEEE-eCCCeEEEEECCC----CeEEEEEecCCCCEEEEEEcCC-CCEEEEEECCCeEEEEECCC
Q psy14440        460 EGPVRKLSFSPDRSLLLSC-SQDNTIRLWSLLL----WRCLVVYKGHGHPVWDIKFSPH-GYYFASAGHDRMARLWATDS  533 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~-s~Dg~V~iwdl~t----~~~~~~~~~h~~~V~~v~~sp~-g~~l~sgs~Dg~i~lwd~~~  533 (711)
                      .....+++|++++..|+.+ ..++.|..+++..    ......+.........+++.+. ++.+++-...+.|.+++.+.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            4557899999876655554 4568899999875    2222223322344578888864 44555656788999999886


Q ss_pred             CceeEEeecCCCCeeEEEEcCCCCEEEEEEcC--CcEEEEECCCCcEEEEe-eCCCCCeEEEEEecCCCEEEEEe-CCCc
Q psy14440        534 YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD--RTIRLWDCVTGSHVRLL-TGHKAPVYALSFSVCGRFLASAG-GDGN  609 (711)
Q Consensus       534 ~~~~~~~~~h~~~V~~v~~sp~~~~latgs~D--g~I~iwD~~~~~~v~~~-~~h~~~I~~la~spdg~~Lasgs-~Dg~  609 (711)
                      ......+.........++++|.+.+|+.+...  +.|..+++. |.....+ ...-...+.|++++++..|+.+. ..+.
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~  187 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence            54444444445678899999976666655543  688888875 4433433 23345678999998877776665 5579


Q ss_pred             EEEEECCCCeEEEEee--CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        610 VHMWDLSNGHLLTLLT--GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       610 I~iwDl~sg~~i~~l~--~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      |..+|+..........  .......+|++. .+.++++-...+.|..+|..+.
T Consensus       188 I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          188 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             EEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence            9999986432222222  223456788885 4566666667788998886543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.45  E-value=0.00013  Score=78.63  Aligned_cols=199  Identities=11%  Similarity=-0.021  Sum_probs=131.7

Q ss_pred             cCCEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCcee
Q psy14440        460 EGPVRKLSFSPDRSLLLSC-SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH-GYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~-s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~-g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      ...+.+++|++.+..|+.+ ...+.|..+++........+.........+++.+. ++++++-...+.|.+.+++.....
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            3457899999766655544 45788999999866544444433334567888874 445556566788999888765544


Q ss_pred             EEeecCCCCeeEEEEcCCCCEEEEEEc-C-CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEE
Q psy14440        538 RLFVGHYSDVDCVQFHPNSNYVATGSS-D-RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAG-GDGNVHMWD  614 (711)
Q Consensus       538 ~~~~~h~~~V~~v~~sp~~~~latgs~-D-g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs-~Dg~I~iwD  614 (711)
                      ..+.........++++|.+.+|+.... . +.|..+++............-...+.|+|++++..|+.+. ..+.|..+|
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d  274 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  274 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence            444445567889999987766665543 4 6788888765443333333345578999998776666554 567899999


Q ss_pred             CCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        615 LSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       615 l~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      +........+........+|++. ++.++++....+.|..+|..+
T Consensus       275 ~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~  318 (386)
T 3v65_B          275 LDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFT  318 (386)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             CCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCC
Confidence            86544333343334567888884 456666666778888888433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.45  E-value=1.4e-05  Score=80.82  Aligned_cols=180  Identities=10%  Similarity=-0.001  Sum_probs=122.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEE
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSF  468 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~f  468 (711)
                      -...+.|+ ++.+..+.+.+|.|+++|+.++++..                               .+....----.+++
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~-------------------------------~~l~~~~FgeGit~  103 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVW-------------------------------MERLGNIFAEGLAS  103 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSE-------------------------------EEECTTCCEEEEEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEe-------------------------------EECCCCcceeEEEE
Confidence            35788887 46777788888889999987665432                               11111111123444


Q ss_pred             cCCCCEEEE-EeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeec--CC-
Q psy14440        469 SPDRSLLLS-CSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG--HY-  544 (711)
Q Consensus       469 spdg~~L~s-~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~--h~-  544 (711)
                        +++.|+. .-.++.+.+||..+++.+.++... ..-|.+++  ++..|+.+..++.|.++|..+.+.++.+.-  +. 
T Consensus       104 --~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~  178 (268)
T 3nok_A          104 --DGERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGLCY--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ  178 (268)
T ss_dssp             --CSSCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCEEE--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE
T ss_pred             --eCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEEec--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc
Confidence              3444444 446789999999999999998753 23355554  567777777799999999999988877653  21 


Q ss_pred             --CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC-------------CCCeEEEEEecCCCEEEEEeC
Q psy14440        545 --SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH-------------KAPVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       545 --~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h-------------~~~I~~la~spdg~~Lasgs~  606 (711)
                        ..++.+.|. +|...+..-.+..|.+.|..+|+.+..+.-.             ..-.+.||++++++.|++.+.
T Consensus       179 ~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          179 PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence              234667777 6754444445789999999999998887531             135789999998766665553

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.44  E-value=5.4e-05  Score=83.04  Aligned_cols=198  Identities=10%  Similarity=0.120  Sum_probs=119.3

Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCC-C----eEEEEECCC-CeEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEC
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQD-N----TIRLWSLLL-WRCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMARLWAT  531 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~D-g----~V~iwdl~t-~~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~  531 (711)
                      .......++|++++++|+++... +    .+.+++... ......+.. .....++++++ +|..+++-..++.|..++.
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~  255 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDF  255 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence            34567899999999977666542 1    233344321 111122221 23456788999 7777777767889999999


Q ss_pred             CCCceeEEee-cCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCC--CcE--EEEeeCC---------------CCCeE
Q psy14440        532 DSYHPLRLFV-GHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVT--GSH--VRLLTGH---------------KAPVY  590 (711)
Q Consensus       532 ~~~~~~~~~~-~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~--~~~--v~~~~~h---------------~~~I~  590 (711)
                      +.+....... +....-..++|+|++++|+.+. ..+.|..++...  +..  +..+.+.               -..-.
T Consensus       256 ~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~  335 (430)
T 3tc9_A          256 TTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPR  335 (430)
T ss_dssp             TTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEE
T ss_pred             CCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCc
Confidence            8765423222 2224567899999999655554 577899987653  221  2222221               01122


Q ss_pred             -EEEEe--------cCCCEEEEEeCCCcEEEEECCCCeEEEEeeC----C-------------CCCEEEEEEeCC-CCEE
Q psy14440        591 -ALSFS--------VCGRFLASAGGDGNVHMWDLSNGHLLTLLTG----H-------------TDVVRALCFSRD-GNIL  643 (711)
Q Consensus       591 -~la~s--------pdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~----h-------------~~~V~sl~fspd-g~~L  643 (711)
                       .+++.        .+|.+.++-...++|+.++ .+|+.......    .             -...+.|+++++ |.++
T Consensus       336 ~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~ly  414 (430)
T 3tc9_A          336 QGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFF  414 (430)
T ss_dssp             EEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEE
T ss_pred             ceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEE
Confidence             45553        3455555555677899998 46754433321    0             124789999994 6666


Q ss_pred             EEEeCCCcEEEEeCC
Q psy14440        644 ASSGQDCSVKLWDFA  658 (711)
Q Consensus       644 asgs~Dg~V~iWdl~  658 (711)
                      ++-...+.|+.++++
T Consensus       415 VaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          415 IGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEGGGTEEEEEEEC
T ss_pred             EEECCCCeEEEEccC
Confidence            666667789888764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.40  E-value=3.2e-06  Score=99.70  Aligned_cols=192  Identities=11%  Similarity=0.122  Sum_probs=118.3

Q ss_pred             CEEEEEEc-CCCCEEEEEeC-C----CeEEEEECCCC-eEEE-EEecCCCCEEEEEEcCCCCEEEEEECC-----CeEEE
Q psy14440        462 PVRKLSFS-PDRSLLLSCSQ-D----NTIRLWSLLLW-RCLV-VYKGHGHPVWDIKFSPHGYYFASAGHD-----RMARL  528 (711)
Q Consensus       462 ~V~~l~fs-pdg~~L~s~s~-D----g~V~iwdl~t~-~~~~-~~~~h~~~V~~v~~sp~g~~l~sgs~D-----g~i~l  528 (711)
                      .+.+.+|| |||++|+.+.. +    .+|+++|+.++ +.+. .+..   ...++.|+|+|+.|+....|     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57889999 99998875433 2    35999999988 6321 1111   12357899999888877765     36888


Q ss_pred             EECCCCce--eEEeec-CCCCeeEEEEcCCCCEEEEEEc---CCcEEEEECCCCc-EE--EEee-CCCCCeEEEEEecCC
Q psy14440        529 WATDSYHP--LRLFVG-HYSDVDCVQFHPNSNYVATGSS---DRTIRLWDCVTGS-HV--RLLT-GHKAPVYALSFSVCG  598 (711)
Q Consensus       529 wd~~~~~~--~~~~~~-h~~~V~~v~~sp~~~~latgs~---Dg~I~iwD~~~~~-~v--~~~~-~h~~~I~~la~spdg  598 (711)
                      +++.++..  ...+.. .......+.|+|||++|+..+.   ...|+++|+.++. ..  +.+. ...+...++.|+.++
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            88877642  233332 2234567899999999887763   3468889998762 22  4443 344556666665544


Q ss_pred             CEEEEEeCC----CcEEEEECCCCeEEEE-eeCCCC--CEEEEEEeCCCCEEEEEeCCCcEE--EEeC
Q psy14440        599 RFLASAGGD----GNVHMWDLSNGHLLTL-LTGHTD--VVRALCFSRDGNILASSGQDCSVK--LWDF  657 (711)
Q Consensus       599 ~~Lasgs~D----g~I~iwDl~sg~~i~~-l~~h~~--~V~sl~fspdg~~Lasgs~Dg~V~--iWdl  657 (711)
                      .+++.+..+    ..|..+|+.++..... +..|..  .+.++++. .+.++++...||..+  ++|+
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            445555443    3677788765321122 223333  34556654 334566667777644  5554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.39  E-value=0.00013  Score=73.10  Aligned_cols=181  Identities=10%  Similarity=0.020  Sum_probs=120.4

Q ss_pred             CceEEEEECCCCCEEEEEeCC--CeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccC-CEE
Q psy14440        388 QQVTCAEISEDVSILAVGFSE--SYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEG-PVR  464 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~d--g~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~-~V~  464 (711)
                      .-...+.|+. +.+..+.+.+  +.|+++|+.++++.                               ..+.-... ---
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~-------------------------------~~~~l~~~~fge   68 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRIL-------------------------------QRAEVPPPYFGA   68 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEE-------------------------------EEEECCTTCCEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEE-------------------------------EEEeCCCCccee
Confidence            4467899987 5666666654  47888888665543                               22221111 112


Q ss_pred             EEEEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecC
Q psy14440        465 KLSFSPDRSLLLSC-SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGH  543 (711)
Q Consensus       465 ~l~fspdg~~L~s~-s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h  543 (711)
                      ++++  +++.|+.. -.++.+.+||..+.+.+.++.... .=|.+++  ++..++.+..++.|.++|..+.+.++.+.-.
T Consensus        69 Gi~~--~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~  143 (243)
T 3mbr_X           69 GIVA--WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALTS--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT  143 (243)
T ss_dssp             EEEE--ETTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEEE--CSSCEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred             EEEE--eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEee--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEc
Confidence            2333  24444444 457899999999999999987533 3356654  4555555566899999999999888776532


Q ss_pred             C-----CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCC-------------CCCeEEEEEecCCCEEEEEe
Q psy14440        544 Y-----SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH-------------KAPVYALSFSVCGRFLASAG  605 (711)
Q Consensus       544 ~-----~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h-------------~~~I~~la~spdg~~Lasgs  605 (711)
                      .     ..++.+.|. +|..++..-.+..|.+.|..+|+.+..+.-.             ..-.+.||++++++.|++.+
T Consensus       144 ~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          144 AGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             ETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             cCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            1     345566766 6655544445789999999999998887521             13568999999887777666


Q ss_pred             C
Q psy14440        606 G  606 (711)
Q Consensus       606 ~  606 (711)
                      .
T Consensus       223 K  223 (243)
T 3mbr_X          223 K  223 (243)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.37  E-value=7e-05  Score=82.20  Aligned_cols=195  Identities=12%  Similarity=0.095  Sum_probs=120.3

Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCC----e-EEEEECCCC-eEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCeEEEEECC
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDN----T-IRLWSLLLW-RCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMARLWATD  532 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg----~-V~iwdl~t~-~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~~  532 (711)
                      .....+++|+++|+ |+.+...+    . +..++.... .....+. .......+++++ +|.++++-..++.|+.++..
T Consensus       181 ~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          181 IGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            44578999999999 55444321    1 333332211 1011111 233446688999 77766676678899999998


Q ss_pred             CCceeEEe-ec-CCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECC--CCcE--EEEeeCC---------------CCCeE
Q psy14440        533 SYHPLRLF-VG-HYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCV--TGSH--VRLLTGH---------------KAPVY  590 (711)
Q Consensus       533 ~~~~~~~~-~~-h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~--~~~~--v~~~~~h---------------~~~I~  590 (711)
                      ++.....+ .. ....-..++|+|++++|+.+. ..+.|+.+|..  ++..  ...+.+.               -....
T Consensus       259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~  338 (433)
T 4hw6_A          259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPN  338 (433)
T ss_dssp             TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEE
T ss_pred             CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCc
Confidence            77652222 21 222234799999999665554 56789998865  3321  1222221               12356


Q ss_pred             EEEE---------ecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCC------------------CCCEEEEEEe-CCCCE
Q psy14440        591 ALSF---------SVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGH------------------TDVVRALCFS-RDGNI  642 (711)
Q Consensus       591 ~la~---------spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h------------------~~~V~sl~fs-pdg~~  642 (711)
                      .+++         ..+|.++++-...++|+.++. +|.... +.+.                  -.....|+++ ++|.+
T Consensus       339 giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t-~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~l  416 (433)
T 4hw6_A          339 QGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTT-YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCF  416 (433)
T ss_dssp             EEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEE-EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEE
T ss_pred             cEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEE-EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEE
Confidence            7899         677777777667789999985 665433 3221                  1236789999 67777


Q ss_pred             EEEEeCCCcEEEEeCC
Q psy14440        643 LASSGQDCSVKLWDFA  658 (711)
Q Consensus       643 Lasgs~Dg~V~iWdl~  658 (711)
                      +++-...++|+.++++
T Consensus       417 yVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          417 YIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEGGGTEEEEEEEC
T ss_pred             EEEeCCCCEEEEEecC
Confidence            7776677889988764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.35  E-value=0.00055  Score=74.20  Aligned_cols=201  Identities=10%  Similarity=-0.052  Sum_probs=133.4

Q ss_pred             ccCCEEEEEEcCCCCEEEEE-eCCCeEEEEECCCC----eEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCeEEEEECC
Q psy14440        459 HEGPVRKLSFSPDRSLLLSC-SQDNTIRLWSLLLW----RCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMARLWATD  532 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~-s~Dg~V~iwdl~t~----~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~~  532 (711)
                      ....+.+++|++.+..|+.+ ...+.|+.+++...    .....+.........+++.. .++++++-...+.|.+.+++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            45678899999866666555 45678999998652    23333333445677889987 45556666678899999998


Q ss_pred             CCceeEEeecCCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEe-CCCc
Q psy14440        533 SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS--DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAG-GDGN  609 (711)
Q Consensus       533 ~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~--Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs-~Dg~  609 (711)
                      .......+.........|+++|.+.+|+....  .+.|...++........+...-...+.|++++++..|+.+. ..+.
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~  269 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  269 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence            76655555555566889999997666666553  37899999865443333343446789999998877777665 4578


Q ss_pred             EEEEECCCCeEEEEeeC--CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        610 VHMWDLSNGHLLTLLTG--HTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       610 I~iwDl~sg~~i~~l~~--h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      |..+|+...........  ......+|++. .+.++++-...+.|..+|..+.
T Consensus       270 I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          270 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             EEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred             EEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence            99999865433333332  23456677774 3456666666788888885443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.33  E-value=0.00032  Score=74.53  Aligned_cols=209  Identities=8%  Similarity=-0.067  Sum_probs=128.3

Q ss_pred             cCCCceEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCE
Q psy14440        385 NARQQVTCAEISEDVS-ILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPV  463 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg~-~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V  463 (711)
                      ........++|++.+. ++++-...+.|..+++.+.....                               .+.......
T Consensus        70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------------------~~~~~~~~p  118 (349)
T 3v64_C           70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------------------VVSTGLESP  118 (349)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------------------EECSSCSCC
T ss_pred             cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-------------------------------EEeCCCCCc
Confidence            3345578888886544 44454556777777765432211                               111112334


Q ss_pred             EEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCE-EEEEECC-CeEEEEECCCCceeEEe
Q psy14440        464 RKLSFSPDRSLL-LSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYY-FASAGHD-RMARLWATDSYHPLRLF  540 (711)
Q Consensus       464 ~~l~fspdg~~L-~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~-l~sgs~D-g~i~lwd~~~~~~~~~~  540 (711)
                      .++++.+.+..| ++-...+.|.+.++..................+++.|.+.. +++-... +.|..++++.......+
T Consensus       119 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~  198 (349)
T 3v64_C          119 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA  198 (349)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC
T ss_pred             cEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE
Confidence            678888755554 45455678999998755444444444456789999985554 4444444 78888888754433333


Q ss_pred             ecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q psy14440        541 VGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGH  619 (711)
Q Consensus       541 ~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~  619 (711)
                      .........+++++++..|+.+. ..+.|..+|+........+.........+++. .+..+++-...+.|..+|..+|+
T Consensus       199 ~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          199 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCC
Confidence            33445678999998766666554 46789999987544333343344566788883 45555555566788888866676


Q ss_pred             EEEEee
Q psy14440        620 LLTLLT  625 (711)
Q Consensus       620 ~i~~l~  625 (711)
                      .+..+.
T Consensus       278 ~~~~i~  283 (349)
T 3v64_C          278 NQEIIR  283 (349)
T ss_dssp             SCEEEE
T ss_pred             ccEEec
Confidence            555554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.30  E-value=0.00031  Score=73.70  Aligned_cols=200  Identities=11%  Similarity=-0.023  Sum_probs=129.4

Q ss_pred             CCEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeE-EEEEecCCCCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCcee
Q psy14440        461 GPVRKLSFSPDRSLLL-SCSQDNTIRLWSLLLWRC-LVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMARLWATDSYHPL  537 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~-s~s~Dg~V~iwdl~t~~~-~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~~~~~~~  537 (711)
                      ..+.+++|++.+..|+ +-...+.|..+++..... ...+.........+++.+ .++.+++-...+.|.+++.+.....
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            3467899998655554 445578899999876532 122222233456788886 4555566667789999999865444


Q ss_pred             EEeecCCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEE
Q psy14440        538 RLFVGHYSDVDCVQFHPNSNYVATGSS--DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAG-GDGNVHMWD  614 (711)
Q Consensus       538 ~~~~~h~~~V~~v~~sp~~~~latgs~--Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs-~Dg~I~iwD  614 (711)
                      ..+.........++++|.+.+|+.+..  .+.|..+++............-...+.|+|++++..|+.+. ..+.|..+|
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d  194 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  194 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence            444455567889999997666666653  57888888764332223333334578999999777666654 567899999


Q ss_pred             CCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        615 LSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       615 l~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      +..........+......++++. .+.++++-...+.|..+|..+..
T Consensus       195 ~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          195 LDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             TTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCC
Confidence            86433322333344566788886 34556666667889999875543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.28  E-value=0.00098  Score=69.60  Aligned_cols=183  Identities=13%  Similarity=-0.016  Sum_probs=118.8

Q ss_pred             EEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCC----CceeEEeecCCCCee
Q psy14440        474 LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGY-YFASAGHDRMARLWATDS----YHPLRLFVGHYSDVD  548 (711)
Q Consensus       474 ~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~-~l~sgs~Dg~i~lwd~~~----~~~~~~~~~h~~~V~  548 (711)
                      +|+.+.. ..|+..|+.+.+....+. .......++|++.+. .+++-...+.|..++.+.    ......+........
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            3444443 459999998776655554 345678999998654 555555678999999876    222233333345668


Q ss_pred             EEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC--CcEEEEECCCCeEEEEe-
Q psy14440        549 CVQFHPNSN-YVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD--GNVHMWDLSNGHLLTLL-  624 (711)
Q Consensus       549 ~v~~sp~~~-~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D--g~I~iwDl~sg~~i~~l-  624 (711)
                      .+++++.+. .+++-...+.|.++|.........+...-.....++++|.+.+|+.+...  +.|..+++. |+....+ 
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~  159 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV  159 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEE
Confidence            999987544 44555667899999987554433344344567899999976666655543  689888875 4333333 


Q ss_pred             eCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEeCCC
Q psy14440        625 TGHTDVVRALCFSRDGNILASSG-QDCSVKLWDFAK  659 (711)
Q Consensus       625 ~~h~~~V~sl~fspdg~~Lasgs-~Dg~V~iWdl~~  659 (711)
                      ...-...+.|+|++++..|+.+. ..+.|..+|+..
T Consensus       160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            22345678999998776665554 567899999864

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.25  E-value=0.00046  Score=69.79  Aligned_cols=199  Identities=13%  Similarity=0.114  Sum_probs=127.3

Q ss_pred             EecCCCceEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee-ccc
Q psy14440        383 LLNARQQVTCAEISEDVS-ILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV-GHE  460 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~-~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~  460 (711)
                      +-+-.+.+..++|++++. ++|+...++.|...|.. ++                               ..+.+. +-.
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-------------------------------v~~~i~l~g~   69 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-------------------------------LIRTIPLDFV   69 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-------------------------------EEEEEECSSC
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-------------------------------EEEEEecCCC
Confidence            445557899999999765 55567777777777765 22                               222221 112


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE---EEEEe------cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC---LVVYK------GHGHPVWDIKFSPHGYYFASAGHDRMARLWAT  531 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~---~~~~~------~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~  531 (711)
                      ...-++++..++.++++.-.++.+.++++.....   +....      ..+.....++|++.++.|+++.......+|.+
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence            4577888888887767766678899988765432   22222      13445689999998877777766555555555


Q ss_pred             C---CCceeEEee-------cCCCCeeEEEEcCCCCE-EEEEEcCCcEEEEECCCCcEEEEeeCCC---------CCeEE
Q psy14440        532 D---SYHPLRLFV-------GHYSDVDCVQFHPNSNY-VATGSSDRTIRLWDCVTGSHVRLLTGHK---------APVYA  591 (711)
Q Consensus       532 ~---~~~~~~~~~-------~h~~~V~~v~~sp~~~~-latgs~Dg~I~iwD~~~~~~v~~~~~h~---------~~I~~  591 (711)
                      +   ....+..+.       .+..++..++++|.... ++.....+.+.++|.. |+.+..+.-..         ..-..
T Consensus       150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEG  228 (255)
T 3qqz_A          150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEG  228 (255)
T ss_dssp             ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEE
T ss_pred             cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCe
Confidence            3   112233321       24457899999996555 4455556788899965 66655544221         25688


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEC
Q psy14440        592 LSFSVCGRFLASAGGDGNVHMWDL  615 (711)
Q Consensus       592 la~spdg~~Lasgs~Dg~I~iwDl  615 (711)
                      |+|.++|+..+ .++-+.+++|.-
T Consensus       229 ia~d~~G~lyI-vsE~n~~y~f~~  251 (255)
T 3qqz_A          229 VAMDASGNIYI-VSEPNRFYRFTP  251 (255)
T ss_dssp             EEECTTCCEEE-EETTTEEEEEEC
T ss_pred             eEECCCCCEEE-EcCCceEEEEEe
Confidence            99999998544 467777777754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.25  E-value=0.00084  Score=70.50  Aligned_cols=261  Identities=11%  Similarity=0.085  Sum_probs=145.0

Q ss_pred             cCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-eeecc-----Ccccccc-------ccccCCcEEEEEecCCCe
Q psy14440        385 NARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKL-KAMKS-----SDQLQDI-------EMECDDILVRIMDERNAE  451 (711)
Q Consensus       385 ~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~-~~~~~-----~~~~~~l-------~~~~~d~~i~i~d~~~~~  451 (711)
                      .....+.++.|.+++..+|+| ..|.| ++..+.++. ..+..     ......+       .+....+.+..- .+.++
T Consensus        33 ~~~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~S-~DgG~  109 (327)
T 2xbg_A           33 PTTATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLHT-TDGGQ  109 (327)
T ss_dssp             SCSSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEEE-SSTTS
T ss_pred             CCCCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEEE-CCCCC
Confidence            344579999999888888865 46655 333433221 11111     0011111       112223333221 12233


Q ss_pred             eEEEee---cccCCEEEEEEcCCCCEEEEEeCCCeEEE-EEC-CCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeE
Q psy14440        452 TTRTLV---GHEGPVRKLSFSPDRSLLLSCSQDNTIRL-WSL-LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMA  526 (711)
Q Consensus       452 ~~~~l~---~h~~~V~~l~fspdg~~L~s~s~Dg~V~i-wdl-~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i  526 (711)
                      .-..+.   .+.+.++.+.+..++..++++ .+|.|.. .|- .+++.+.  ..+...+.++.+.+++.+++++...+..
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~~G~~~  186 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALV--QEAIGVMRNLNRSPSGEYVAVSSRGSFY  186 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEE--CSCCCCEEEEEECTTSCEEEEETTSSEE
T ss_pred             CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEee--cCCCcceEEEEEcCCCcEEEEECCCcEE
Confidence            222222   234567888887777655554 4564432 221 2344332  3455678999999988887776544444


Q ss_pred             EEEEC--CCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC----CCCCeEEEEEecCCCE
Q psy14440        527 RLWAT--DSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG----HKAPVYALSFSVCGRF  600 (711)
Q Consensus       527 ~lwd~--~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~----h~~~I~~la~spdg~~  600 (711)
                      +-+|-  .+.+.+.  ......+..+.+.+++..++ ++.+|.+++.+...|+....+..    +...+.++++.+++..
T Consensus       187 ~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~  263 (327)
T 2xbg_A          187 STWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEV  263 (327)
T ss_dssp             EEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCE
T ss_pred             EEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEE
Confidence            44442  2333332  23456788999998887654 45578887775333443333321    2235889999988887


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeeC---CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        601 LASAGGDGNVHMWDLSNGHLLTLLTG---HTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       601 Lasgs~Dg~I~iwDl~sg~~i~~l~~---h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      ++++. +|.| ++....|+.-..+..   +...++++.|..++ .+++++.+|.|.-++-
T Consensus       264 ~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          264 WLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             EEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             EEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence            77654 6766 445555654444432   23567889897554 4666778998776653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.23  E-value=0.0023  Score=69.30  Aligned_cols=225  Identities=10%  Similarity=-0.003  Sum_probs=138.0

Q ss_pred             ecCCCceEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCC
Q psy14440        384 LNARQQVTCAEISEDVS-ILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGP  462 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~-~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~  462 (711)
                      ......+..++|++.+. +.++-...+.|+.+++.+....                           ......+......
T Consensus       108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~---------------------------~~~~~~~~~~~~~  160 (400)
T 3p5b_L          108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------------------------SSYDTVISRDIQA  160 (400)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------------------CCCEEEECSSCSC
T ss_pred             ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC---------------------------CcceEEEeCCCCC
Confidence            34456778888887544 4444445667777776432100                           0011112223345


Q ss_pred             EEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE-C-CCeEEEEECCCCceeEE
Q psy14440        463 VRKLSFSPDRSLL-LSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG-H-DRMARLWATDSYHPLRL  539 (711)
Q Consensus       463 V~~l~fspdg~~L-~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs-~-Dg~i~lwd~~~~~~~~~  539 (711)
                      ..++++...+..| ++-...+.|.+.++........+.........|++.|.+.+|+.+. . .+.|...+++.......
T Consensus       161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~  240 (400)
T 3p5b_L          161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  240 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE
T ss_pred             cccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE
Confidence            7789998755444 4545678899999986655555554455678999998655555544 2 47888888886554444


Q ss_pred             eecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEeeC--CCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy14440        540 FVGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSHVRLLTG--HKAPVYALSFSVCGRFLASAGGDGNVHMWDLS  616 (711)
Q Consensus       540 ~~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~v~~~~~--h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~  616 (711)
                      +.........|++++++..|+.+. ..+.|..+|+...........  .-.....+++. .+.++++-...+.|..+|..
T Consensus       241 ~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~  319 (400)
T 3p5b_L          241 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL  319 (400)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESS
T ss_pred             EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcC
Confidence            444456788999998777766665 467899999865443333332  23445677773 34455555667889999988


Q ss_pred             CCeEEEEeeCCCCCEEEEEE
Q psy14440        617 NGHLLTLLTGHTDVVRALCF  636 (711)
Q Consensus       617 sg~~i~~l~~h~~~V~sl~f  636 (711)
                      +|+.+..+........+|..
T Consensus       320 ~G~~~~~i~~~~~~p~~i~v  339 (400)
T 3p5b_L          320 TGSDVNLLAENLLSPEDMVL  339 (400)
T ss_dssp             SCCCCEEEECSCSCEEEEEE
T ss_pred             CCCceEEEecCCCCCceEEE
Confidence            88776666544444555544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.22  E-value=0.00042  Score=74.68  Aligned_cols=219  Identities=7%  Similarity=-0.083  Sum_probs=133.2

Q ss_pred             CCCceEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEE
Q psy14440        386 ARQQVTCAEISEDV-SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVR  464 (711)
Q Consensus       386 h~~~V~~l~fs~dg-~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~  464 (711)
                      .......++|++.+ .++++-...+.|..|++.+.....                               .+........
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------------------~~~~~~~~p~  162 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------------------VVSTGLESPG  162 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------------------------------EECSSCSCCC
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------------------------------EEeCCCCCcc
Confidence            34557788888644 444455556777777765432211                               1111122346


Q ss_pred             EEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE-CC-CeEEEEECCCCceeEEee
Q psy14440        465 KLSFSPDRSLL-LSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG-HD-RMARLWATDSYHPLRLFV  541 (711)
Q Consensus       465 ~l~fspdg~~L-~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs-~D-g~i~lwd~~~~~~~~~~~  541 (711)
                      ++++.+.+..| ++-...+.|.+.++........+.........+++.|.+..+..+. .. +.|..++.+.........
T Consensus       163 glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~  242 (386)
T 3v65_B          163 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD  242 (386)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence            77888755554 4445567888888875444444444445678999998665554444 44 688888887654444444


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q psy14440        542 GHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL  620 (711)
Q Consensus       542 ~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~  620 (711)
                      ........|+|++++..|+.+. ..+.|..+|+........+.........|++. .+..+++....+.|..+|..+|+.
T Consensus       243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcc
Confidence            4455678999998666665554 46789999986544333344344566788883 455555666678899998777776


Q ss_pred             EEEeeCCCCCEEEEEE
Q psy14440        621 LTLLTGHTDVVRALCF  636 (711)
Q Consensus       621 i~~l~~h~~~V~sl~f  636 (711)
                      +..+........+|++
T Consensus       322 ~~~i~~~~~~p~gi~v  337 (386)
T 3v65_B          322 QEIIRNKLHFPMDIHT  337 (386)
T ss_dssp             CEEEECSCSCCCCEEE
T ss_pred             eEEEccCCCCCceEEE
Confidence            6655533333344444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.17  E-value=0.00033  Score=73.70  Aligned_cols=184  Identities=16%  Similarity=0.220  Sum_probs=126.0

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCC----CC---E-EEEEEC--CCeEEEEECC-CCceeEE
Q psy14440        471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH----GY---Y-FASAGH--DRMARLWATD-SYHPLRL  539 (711)
Q Consensus       471 dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~----g~---~-l~sgs~--Dg~i~lwd~~-~~~~~~~  539 (711)
                      ....++.....+-+.+||+ +++.+..+..  +.+..+..-+.    |+   + +++.-.  +++|++|+++ ....+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            4456666677788999999 7888888763  55677766552    22   2 233334  5899999774 2223554


Q ss_pred             eec------C-CCCeeEEEE--cCC-CC-EEEEEEcCCcEEEEECC-------CCcEEEEeeCCCCCeEEEEEecCCCEE
Q psy14440        540 FVG------H-YSDVDCVQF--HPN-SN-YVATGSSDRTIRLWDCV-------TGSHVRLLTGHKAPVYALSFSVCGRFL  601 (711)
Q Consensus       540 ~~~------h-~~~V~~v~~--sp~-~~-~latgs~Dg~I~iwD~~-------~~~~v~~~~~h~~~I~~la~spdg~~L  601 (711)
                      +..      . ...+..+|+  ++. +. |+++...+|.+..|++.       +++.++.|.. .+.+..++..+...+|
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L  194 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL  194 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence            422      1 156777787  664 43 68888889999999882       3466788774 4578888899988999


Q ss_pred             EEEeCCCcEEEEECC-----CCeEEEEee-CCC-CCEEEEEEe--CCCC-EEEEEe-CCCcEEEEeCC
Q psy14440        602 ASAGGDGNVHMWDLS-----NGHLLTLLT-GHT-DVVRALCFS--RDGN-ILASSG-QDCSVKLWDFA  658 (711)
Q Consensus       602 asgs~Dg~I~iwDl~-----sg~~i~~l~-~h~-~~V~sl~fs--pdg~-~Lasgs-~Dg~V~iWdl~  658 (711)
                      +.+-++..|..+|..     +++.+..+. ++- ..+..|++-  ++|+ +|++++ .++++.|||..
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            999998777777754     456776653 232 468888884  4555 555555 67899999996

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.10  E-value=0.00083  Score=74.33  Aligned_cols=196  Identities=10%  Similarity=0.092  Sum_probs=121.7

Q ss_pred             CCEEEEEE-------cCCCCEEEEEeCCC-------eEEEEECCC-C--------eEEEEEecCCCCEEEEEEcC-CCCE
Q psy14440        461 GPVRKLSF-------SPDRSLLLSCSQDN-------TIRLWSLLL-W--------RCLVVYKGHGHPVWDIKFSP-HGYY  516 (711)
Q Consensus       461 ~~V~~l~f-------spdg~~L~s~s~Dg-------~V~iwdl~t-~--------~~~~~~~~h~~~V~~v~~sp-~g~~  516 (711)
                      .....++|       ++++++|+++...+       .|.+++... +        ..+..+.    ....+++++ ++.+
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~----~p~giavdp~~g~L  261 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK----QCNGATIHPINGEL  261 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES----CCCCEEECTTTCCE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC----CceEEEEcCCCCeE
Confidence            35789999       99999777776554       256665333 1        2222222    234678899 5566


Q ss_pred             EEEEECCCeEEEEECC-------CCce-----------eEE-ee-cCCCCeeEEEEcCCCCEEEEE-EcCCcEEEEEC--
Q psy14440        517 FASAGHDRMARLWATD-------SYHP-----------LRL-FV-GHYSDVDCVQFHPNSNYVATG-SSDRTIRLWDC--  573 (711)
Q Consensus       517 l~sgs~Dg~i~lwd~~-------~~~~-----------~~~-~~-~h~~~V~~v~~sp~~~~latg-s~Dg~I~iwD~--  573 (711)
                      +++...++.|..+|++       ++..           ... +. +....-..|+|+|++++|+.+ +....|+.+|.  
T Consensus       262 Yvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          262 YFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             EEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence            6667788899999987       4443           111 21 223446799999999965555 45678888654  


Q ss_pred             CCCcE--EEEeeCC---C------------CCeE-EEEEe-------cCCCEEEEEeCCCcEEEEECCCCeEEEEeeCC-
Q psy14440        574 VTGSH--VRLLTGH---K------------APVY-ALSFS-------VCGRFLASAGGDGNVHMWDLSNGHLLTLLTGH-  627 (711)
Q Consensus       574 ~~~~~--v~~~~~h---~------------~~I~-~la~s-------pdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h-  627 (711)
                      .++..  ...+.+.   .            .... .++..       .+|.++++-...++|+.++ .+|.. .++.+. 
T Consensus       342 ~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g  419 (496)
T 3kya_A          342 IKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRG  419 (496)
T ss_dssp             TTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESC
T ss_pred             CcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEeccc
Confidence            33321  1233221   1            1233 45554       4566666666778999999 56743 344321 


Q ss_pred             -----------------------CCCEEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        628 -----------------------TDVVRALCFSRD-GNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       628 -----------------------~~~V~sl~fspd-g~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                                             -.....|+++++ |.++++=....+||.+++.....
T Consensus       420 ~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          420 ASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             TTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred             ccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence                                   123678999997 77777767788999999876443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.08  E-value=0.00032  Score=76.85  Aligned_cols=193  Identities=13%  Similarity=0.139  Sum_probs=121.0

Q ss_pred             CEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEEC-CC----eEEEEECCCCc
Q psy14440        462 PVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH-DR----MARLWATDSYH  535 (711)
Q Consensus       462 ~V~~l~fsp-dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~-Dg----~i~lwd~~~~~  535 (711)
                      ....++|+| ++..|+++...+.|+.+|+.++....... .......++|+++|++++++.. ++    .+.+++.+...
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            457899998 46667776665889999998776554443 4566889999999996665553 22    23334433221


Q ss_pred             e-eEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEeeC-CCCCeEEEEEecCCCEEEEE-eCCCcEE
Q psy14440        536 P-LRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLTG-HKAPVYALSFSVCGRFLASA-GGDGNVH  611 (711)
Q Consensus       536 ~-~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~~~-h~~~I~~la~spdg~~Lasg-s~Dg~I~  611 (711)
                      . .+.+. .......++++| ++..+++-..++.|..||..++.....+.. .......++|+++|++|+.+ ...+.|.
T Consensus       217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            1 12332 234567889999 677666666788999999887764333322 22457889999999965555 4567899


Q ss_pred             EEECCC--CeE--EEEeeCC---------------CCCEE-EEEEe--------CCCCEEEEEeCCCcEEEEe
Q psy14440        612 MWDLSN--GHL--LTLLTGH---------------TDVVR-ALCFS--------RDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       612 iwDl~s--g~~--i~~l~~h---------------~~~V~-sl~fs--------pdg~~Lasgs~Dg~V~iWd  656 (711)
                      .++...  ++.  +..+.+.               -.... .++..        .+|.++++-...++|+.++
T Consensus       296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~  368 (430)
T 3tc9_A          296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT  368 (430)
T ss_dssp             EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred             EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence            987643  332  1222211               01123 45553        3466666656677888887

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.07  E-value=0.0012  Score=69.27  Aligned_cols=163  Identities=10%  Similarity=-0.034  Sum_probs=105.3

Q ss_pred             CEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE--CCCeEEEEECCCCceeE
Q psy14440        462 PVRKLSFSPDRSLL-LSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG--HDRMARLWATDSYHPLR  538 (711)
Q Consensus       462 ~V~~l~fspdg~~L-~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs--~Dg~i~lwd~~~~~~~~  538 (711)
                      ...++++.+.+..| ++-...+.|.++++..................+++.|.+.+++.+.  ..+.|...+.+......
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  159 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI  159 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence            45678888755544 4545677899999875443333334455678999998655555554  35788888887544333


Q ss_pred             EeecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy14440        539 LFVGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s  617 (711)
                      ........-..+++++++..|+.+. ..+.|..+|+........+.+.......+++.. +.++++-...+.|..+|..+
T Consensus       160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~  238 (318)
T 3sov_A          160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYT  238 (318)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred             EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCC
Confidence            3333445678999999766665554 567899999864433333333445667788763 44555555678899999877


Q ss_pred             CeEEEEee
Q psy14440        618 GHLLTLLT  625 (711)
Q Consensus       618 g~~i~~l~  625 (711)
                      |+.+..+.
T Consensus       239 G~~~~~i~  246 (318)
T 3sov_A          239 GEGLREIH  246 (318)
T ss_dssp             CCSCEEEE
T ss_pred             CCceEEEe
Confidence            77655554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.02  E-value=0.00041  Score=76.02  Aligned_cols=194  Identities=14%  Similarity=0.134  Sum_probs=122.9

Q ss_pred             CEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC---Ce-EEEEECCCCc
Q psy14440        462 PVRKLSFSPD--RSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD---RM-ARLWATDSYH  535 (711)
Q Consensus       462 ~V~~l~fspd--g~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D---g~-i~lwd~~~~~  535 (711)
                      ...+++|+++  +..|+.+...+.|+.+|..++...... .......+++|+++|+++++....   .. +...+.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            4568999984  455666655588999999877765543 345568899999999954444321   22 3333322221


Q ss_pred             e-eEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEe-e-CCCCCeEEEEEecCCCEEEEEe-CCCcE
Q psy14440        536 P-LRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLL-T-GHKAPVYALSFSVCGRFLASAG-GDGNV  610 (711)
Q Consensus       536 ~-~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v~~~-~-~h~~~I~~la~spdg~~Lasgs-~Dg~I  610 (711)
                      . ...+. .......+++++ +++.+++-..++.|+.+|..++.....+ . +....-..++|+++|++|+.+. ..++|
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            1 11222 334567789999 6766666667788999999878763332 2 2223345799999999666554 56789


Q ss_pred             EEEECC--CCeE--EEEeeCC---------------CCCEEEEEE---------eCCCCEEEEEeCCCcEEEEeC
Q psy14440        611 HMWDLS--NGHL--LTLLTGH---------------TDVVRALCF---------SRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       611 ~iwDl~--sg~~--i~~l~~h---------------~~~V~sl~f---------spdg~~Lasgs~Dg~V~iWdl  657 (711)
                      +.++..  ++..  ...+.+.               -.....+++         ..+|+++++-...++|+.++.
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            998865  3321  1122211               123677999         677777777777788999874

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.01  E-value=4.5e-05  Score=88.37  Aligned_cols=227  Identities=8%  Similarity=-0.013  Sum_probs=127.6

Q ss_pred             EEEEECCCCCEEEEEeC-CCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEc
Q psy14440        391 TCAEISEDVSILAVGFS-ESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFS  469 (711)
Q Consensus       391 ~~l~fs~dg~~LatG~~-dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fs  469 (711)
                      .++++..+|+++++|+. ++.+.+||..+.+-..+.                             .+.... .-.+++..
T Consensus       246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-----------------------------~~~~~R-~~~s~~~~  295 (656)
T 1k3i_A          246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-----------------------------DMQVAR-GYQSSATM  295 (656)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-----------------------------CCSSCC-SSCEEEEC
T ss_pred             ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC-----------------------------CCCccc-cccceEEe
Confidence            34677788888888874 446777776543221110                             011111 11244555


Q ss_pred             CCCCEEEEEe-CC-----CeEEEEECCCCeEEEEEecCC-CCE----EEEEEcCCCCEEEEEECC---------CeEEEE
Q psy14440        470 PDRSLLLSCS-QD-----NTIRLWSLLLWRCLVVYKGHG-HPV----WDIKFSPHGYYFASAGHD---------RMARLW  529 (711)
Q Consensus       470 pdg~~L~s~s-~D-----g~V~iwdl~t~~~~~~~~~h~-~~V----~~v~~sp~g~~l~sgs~D---------g~i~lw  529 (711)
                      ++++.++.|+ .+     ..+.+||..+.+-... .... .+.    ....+..+++.++.|+.+         ..+..|
T Consensus       296 ~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~y  374 (656)
T 1k3i_A          296 SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWY  374 (656)
T ss_dssp             TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEE
T ss_pred             cCCeEEEEeCcccCCcccccceEeCCCCCcceeC-CCccccccccccccceeecCCceEEEECCCCcEEEecCccceeee
Confidence            7889888888 34     5699999977653322 1000 000    001122345555566544         356788


Q ss_pred             ECCCCceeEEeecCC---------CCeeEEEEcC-CCCEEEEEEcCC-----------cEEEEECCCCcEEEEe--eCCC
Q psy14440        530 ATDSYHPLRLFVGHY---------SDVDCVQFHP-NSNYVATGSSDR-----------TIRLWDCVTGSHVRLL--TGHK  586 (711)
Q Consensus       530 d~~~~~~~~~~~~h~---------~~V~~v~~sp-~~~~latgs~Dg-----------~I~iwD~~~~~~v~~~--~~h~  586 (711)
                      |..+..-......+.         ..-.++.|.. +++.+++|+.++           .|.+||..+..-....  ..+.
T Consensus       375 d~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~  454 (656)
T 1k3i_A          375 YTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF  454 (656)
T ss_dssp             ECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS
T ss_pred             ecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC
Confidence            887765333222111         1224455543 677788887532           6788888777654443  2222


Q ss_pred             CCe-EEEEEecCCCEEEEEeCC-----------CcEEEEECCCCeEEEE--eeCCCCCEEEEEEeCCCCEEEEEeC
Q psy14440        587 APV-YALSFSVCGRFLASAGGD-----------GNVHMWDLSNGHLLTL--LTGHTDVVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       587 ~~I-~~la~spdg~~Lasgs~D-----------g~I~iwDl~sg~~i~~--l~~h~~~V~sl~fspdg~~Lasgs~  648 (711)
                      ... .+.+..++|++++.|+.+           ..+.+||..+.+-...  +...........+.++|++++.||.
T Consensus       455 ~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          455 ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            222 344566899999999854           4689999987664321  2222222334556789999999985

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.97  E-value=0.0038  Score=73.38  Aligned_cols=217  Identities=12%  Similarity=-0.035  Sum_probs=135.3

Q ss_pred             EEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEE-EEeCCCeEEEEECCCC----eEEEEEecCCCCEEEEEEcCCC-C
Q psy14440        442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLL-SCSQDNTIRLWSLLLW----RCLVVYKGHGHPVWDIKFSPHG-Y  515 (711)
Q Consensus       442 i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~-s~s~Dg~V~iwdl~t~----~~~~~~~~h~~~V~~v~~sp~g-~  515 (711)
                      |+.++........ +......+.+|+|+..+..|+ +-...+.|+.+++...    .....+.........|++...+ +
T Consensus       406 Ir~i~l~~~~~~~-l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~  484 (791)
T 3m0c_C          406 VRKMTLDRSEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN  484 (791)
T ss_dssp             EEEECTTSCCCEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE
T ss_pred             eeEeeccCCccee-eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc
Confidence            4444444333322 333456678999998655555 4455678999998752    2233344344556678888766 4


Q ss_pred             EEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEc-C-CcEEEEECCCCcEEEEeeCCCCCeEEEE
Q psy14440        516 YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS-D-RTIRLWDCVTGSHVRLLTGHKAPVYALS  593 (711)
Q Consensus       516 ~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~-D-g~I~iwD~~~~~~v~~~~~h~~~I~~la  593 (711)
                      ++++-...+.|.+.+++.......+.........|+++|.+.+|+.... . +.|.+.++........+...-...+.|+
T Consensus       485 LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLa  564 (791)
T 3m0c_C          485 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT  564 (791)
T ss_dssp             EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEE
T ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEE
Confidence            5556667889999999866554455455667899999997666666553 3 6799999865444344444446789999


Q ss_pred             EecCCCEEEEEe-CCCcEEEEECCCCeEEEEeeC--CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        594 FSVCGRFLASAG-GDGNVHMWDLSNGHLLTLLTG--HTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       594 ~spdg~~Lasgs-~Dg~I~iwDl~sg~~i~~l~~--h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      +++.+..|+.+. ..+.|..+|+........+..  ......+|++.. +.++++-...+.|...|..+.
T Consensus       565 vD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          565 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             EecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence            998777766664 456899999865444333333  223455777643 344444445677777775443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.97  E-value=0.0012  Score=68.76  Aligned_cols=196  Identities=10%  Similarity=0.070  Sum_probs=129.2

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeEEEEEecC-------CCCEEEEEE---cCCCCEEEEEE---------
Q psy14440        462 PVRKLSFSPDRSLLLSCS-QDNTIRLWSLLLWRCLVVYKGH-------GHPVWDIKF---SPHGYYFASAG---------  521 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s-~Dg~V~iwdl~t~~~~~~~~~h-------~~~V~~v~~---sp~g~~l~sgs---------  521 (711)
                      ---+++|......|+.++ ..++|..||...+......-..       ...+..|.|   .++++++++..         
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            345788987666666665 7899999999765444332211       113689999   68877777544         


Q ss_pred             ----CCCeEEEEECC---CCceeEEeec-------------CCCCeeEEEEcCCCCEEEEEEcC-CcEEEEECCCCcEEE
Q psy14440        522 ----HDRMARLWATD---SYHPLRLFVG-------------HYSDVDCVQFHPNSNYVATGSSD-RTIRLWDCVTGSHVR  580 (711)
Q Consensus       522 ----~Dg~i~lwd~~---~~~~~~~~~~-------------h~~~V~~v~~sp~~~~latgs~D-g~I~iwD~~~~~~v~  580 (711)
                          .++.+..||+.   +++.+.....             -......++..++|+..++++.. +.|..++.... .+.
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~  172 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVS  172 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEE
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEe
Confidence                26789999999   7776655431             12347899999999999999988 88888876533 333


Q ss_pred             Eee------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE--EEEee-CC---CCCEEEE-EEeCCCCE-EEEE
Q psy14440        581 LLT------GHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL--LTLLT-GH---TDVVRAL-CFSRDGNI-LASS  646 (711)
Q Consensus       581 ~~~------~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~--i~~l~-~h---~~~V~sl-~fspdg~~-Lasg  646 (711)
                      .+.      ......+.|+++|+|+.|++...+|.|..+|+.+...  +..-. +.   ......| .--.+|+. |++.
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~  252 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGA  252 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEE
T ss_pred             eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEc
Confidence            321      1223467999999999999887799999999885433  22110 22   1233443 33347887 5555


Q ss_pred             eCCCcEEEEeCC
Q psy14440        647 GQDCSVKLWDFA  658 (711)
Q Consensus       647 s~Dg~V~iWdl~  658 (711)
                      +..+.+.+.+-.
T Consensus       253 ~~~~~~~l~S~D  264 (334)
T 2p9w_A          253 RAPYAISFRSWD  264 (334)
T ss_dssp             ETTEEEEEECSS
T ss_pred             CCCCEEEEECCC
Confidence            566666665543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.92  E-value=0.0039  Score=73.29  Aligned_cols=164  Identities=11%  Similarity=-0.016  Sum_probs=108.3

Q ss_pred             cCCEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE-CC-CeEEEEECCCCce
Q psy14440        460 EGPVRKLSFSPDRSLLLSC-SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG-HD-RMARLWATDSYHP  536 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~-s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs-~D-g~i~lwd~~~~~~  536 (711)
                      .....+|++...++.|+.+ ...+.|.+.++........+.........|++.+.+.+|+.+. .. +.|...+++....
T Consensus       470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~  549 (791)
T 3m0c_C          470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  549 (791)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce
Confidence            3456788998877655544 5578899999986555444544556688999999755555544 33 7888889886655


Q ss_pred             eEEeecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEeeCC--CCCeEEEEEecCCCEEEEE-eCCCcEEE
Q psy14440        537 LRLFVGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSHVRLLTGH--KAPVYALSFSVCGRFLASA-GGDGNVHM  612 (711)
Q Consensus       537 ~~~~~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~v~~~~~h--~~~I~~la~spdg~~Lasg-s~Dg~I~i  612 (711)
                      ...+.........|++++.+..|+.+. ..+.|..+|+........+...  -....+|++.  +.+|+.+ ...+.|..
T Consensus       550 ~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~  627 (791)
T 3m0c_C          550 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFS  627 (791)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEE
Confidence            555555556788999998766666654 4568999998655444443332  2345567664  3345444 45678888


Q ss_pred             EECCCCeEEEEee
Q psy14440        613 WDLSNGHLLTLLT  625 (711)
Q Consensus       613 wDl~sg~~i~~l~  625 (711)
                      .|..+|+.+..+.
T Consensus       628 ~dk~tG~~~~~l~  640 (791)
T 3m0c_C          628 ANRLTGSDVNLLA  640 (791)
T ss_dssp             EETTTCCCCEEEE
T ss_pred             EeCCCCcceEEee
Confidence            8887776555553

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.85  E-value=0.0034  Score=71.93  Aligned_cols=201  Identities=11%  Similarity=-0.018  Sum_probs=123.9

Q ss_pred             ccCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeE-EEEEecCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCc
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCS-QDNTIRLWSLLLWRC-LVVYKGHGHPVWDIKFSPHGY-YFASAGHDRMARLWATDSYH  535 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s-~Dg~V~iwdl~t~~~-~~~~~~h~~~V~~v~~sp~g~-~l~sgs~Dg~i~lwd~~~~~  535 (711)
                      .-+...+++|++.+..|+.+. ..+.|..+++..... ...+.........+++...+. .+++-...+.|.+.+.+...
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~  117 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL  117 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC
Confidence            345578999998777666554 467899999875432 233333335688999998544 55555677899999998655


Q ss_pred             eeEEeecCCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEe-CCCcEEE
Q psy14440        536 PLRLFVGHYSDVDCVQFHPNSNYVATGSS--DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAG-GDGNVHM  612 (711)
Q Consensus       536 ~~~~~~~h~~~V~~v~~sp~~~~latgs~--Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs-~Dg~I~i  612 (711)
                      ....+.........|+++|.+.+|+....  .+.|...++............-...+.|+++++++.|+.+. ..+.|..
T Consensus       118 ~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~  197 (619)
T 3s94_A          118 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK  197 (619)
T ss_dssp             CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEE
Confidence            44444355566789999997666666553  35677777654433333333445678999999766666554 5678999


Q ss_pred             EECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        613 WDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       613 wDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      +|+..........+......+|++..+ .++++-...+.|...|..+.
T Consensus       198 ~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          198 SNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             ESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred             ecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence            998654433322222222346676544 44444445677888886544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.84  E-value=0.0071  Score=64.13  Aligned_cols=238  Identities=12%  Similarity=0.127  Sum_probs=129.3

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      ....+...-..-..++|.+||+++++ ..+|.|++++ .+ +...+                    .+..      .+..
T Consensus        22 ~~~~va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g-~~~~~--------------------~~~~------v~~~   72 (352)
T 2ism_A           22 RVEEVVGGLEVPWALAFLPDGGMLIA-ERPGRIRLFR-EG-RLSTY--------------------AELS------VYHR   72 (352)
T ss_dssp             CEEEEECCCSCEEEEEECTTSCEEEE-ETTTEEEEEE-TT-EEEEE--------------------EECC------CCCS
T ss_pred             EEEEEECCCCCceEEEEcCCCeEEEE-eCCCeEEEEE-CC-CccEe--------------------ecce------Eeec
Confidence            33344444566789999999996655 4568888887 22 21110                    0000      0111


Q ss_pred             ccCCEEEEEEcCC---CCEEEEEeC-C-----CeEEEEECCCCe-----EEE-EEe---cCCCCEEEEEEcCCCCEEEEE
Q psy14440        459 HEGPVRKLSFSPD---RSLLLSCSQ-D-----NTIRLWSLLLWR-----CLV-VYK---GHGHPVWDIKFSPHGYYFASA  520 (711)
Q Consensus       459 h~~~V~~l~fspd---g~~L~s~s~-D-----g~V~iwdl~t~~-----~~~-~~~---~h~~~V~~v~~sp~g~~l~sg  520 (711)
                      ..+....|+|+|+   +..|+++.. .     +.|..|+.....     .+. .+.   +..+....++|.++|.++++.
T Consensus        73 g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A           73 GESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             TTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             CCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            2345789999998   555555443 2     568888876431     121 132   112234689999999766664


Q ss_pred             EC-------------CCeEEEEECCCC------------ceeEEeecCCCCeeEEEEcC-CCCEEEEEEcCCcE------
Q psy14440        521 GH-------------DRMARLWATDSY------------HPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTI------  568 (711)
Q Consensus       521 s~-------------Dg~i~lwd~~~~------------~~~~~~~~h~~~V~~v~~sp-~~~~latgs~Dg~I------  568 (711)
                      +.             .|.|.-++.+..            .....+..-......++|++ +++.+++-.....+      
T Consensus       153 G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~d  232 (352)
T 2ism_A          153 GEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHD  232 (352)
T ss_dssp             CCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCC
T ss_pred             CCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCe
Confidence            32             245666665531            11112221123356789999 66655554433331      


Q ss_pred             EEEECCCCc------------------EEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe----E--EEEe
Q psy14440        569 RLWDCVTGS------------------HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGH----L--LTLL  624 (711)
Q Consensus       569 ~iwD~~~~~------------------~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~----~--i~~l  624 (711)
                      .|.-+..+.                  .+..+ .+......++| .+|.++++.-..+.|...++....    .  ...+
T Consensus       233 ei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~  310 (352)
T 2ism_A          233 EVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETA  310 (352)
T ss_dssp             EEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchhee
Confidence            122222222                  12222 22334567777 467666666566778887765332    1  1222


Q ss_pred             eCCCCCEEEEEEeCCCCEEEEEe
Q psy14440        625 TGHTDVVRALCFSRDGNILASSG  647 (711)
Q Consensus       625 ~~h~~~V~sl~fspdg~~Lasgs  647 (711)
                      -.-...+.++++.+||.++++..
T Consensus       311 ~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          311 LSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EESSCCEEEEEECTTSCEEEEEC
T ss_pred             cccCCCeeEEEECCCCcEEEEEe
Confidence            22236789999999998777654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.80  E-value=0.0053  Score=64.53  Aligned_cols=143  Identities=15%  Similarity=0.258  Sum_probs=99.1

Q ss_pred             CCeEEEEECC--CCeEEEEEec------CC-CCEEEEEE--cCC-CC-EEEEEECCCeEEEEECC-------CCceeEEe
Q psy14440        481 DNTIRLWSLL--LWRCLVVYKG------HG-HPVWDIKF--SPH-GY-YFASAGHDRMARLWATD-------SYHPLRLF  540 (711)
Q Consensus       481 Dg~V~iwdl~--t~~~~~~~~~------h~-~~V~~v~~--sp~-g~-~l~sgs~Dg~i~lwd~~-------~~~~~~~~  540 (711)
                      +++|++|++.  ++. +..+..      .. ..+..+|+  ++. +. |+++...+|.+..|++.       +.+.++.|
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            5789999773  333 333311      11 45666777  663 44 67888889999999883       33556777


Q ss_pred             ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-----CCcEEEEee-CC-CCCeEEEEE--ecCCC-EEEEEe-CCCc
Q psy14440        541 VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV-----TGSHVRLLT-GH-KAPVYALSF--SVCGR-FLASAG-GDGN  609 (711)
Q Consensus       541 ~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~-----~~~~v~~~~-~h-~~~I~~la~--spdg~-~Lasgs-~Dg~  609 (711)
                      .. .+.+..|...+...+|+.+-.+.-|..+|..     +++.+..+. ++ ...+..|++  .++|+ ||++++ .+++
T Consensus       177 ~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          177 KM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             EC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             cC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            64 4578889999888999999998778778855     355665553 22 246888888  45555 666665 6779


Q ss_pred             EEEEECC-CCeEEEEee
Q psy14440        610 VHMWDLS-NGHLLTLLT  625 (711)
Q Consensus       610 I~iwDl~-sg~~i~~l~  625 (711)
                      ..+||.. +.+.+..+.
T Consensus       256 ~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          256 YAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEEESSTTCCEEEEEE
T ss_pred             EEEEECCCCCcEEEEEE
Confidence            9999996 677777774

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.75  E-value=0.018  Score=65.91  Aligned_cols=197  Identities=9%  Similarity=-0.068  Sum_probs=130.5

Q ss_pred             CCEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceeE
Q psy14440        461 GPVRKLSFSPDRSLLLSC-SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSYHPLR  538 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~-s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g-~~l~sgs~Dg~i~lwd~~~~~~~~  538 (711)
                      ..+.+++|++.+..|+.+ ..++.|..+++........+.........+++...+ +.+++-...+.|.+.+++......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            467899999876666554 457889999987654444443333456678887654 455555667889999998655433


Q ss_pred             EeecCCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEC
Q psy14440        539 LFVGHYSDVDCVQFHPNSNYVATGSS--DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAG-GDGNVHMWDL  615 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp~~~~latgs~--Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs-~Dg~I~iwDl  615 (711)
                      .+.........|+++|...+|+....  .+.|...++..... ..+...-...+.|+++++++.|+.+. ..+.|..+|+
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            44355566789999996666666553  46788888765443 33333456788999999877776665 4578999998


Q ss_pred             CCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        616 SNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       616 ~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      ..... ..+........+|++.. +.++++-...+.|...|..+.
T Consensus       196 dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          196 LGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             TSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             CCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence            65433 33333344567888864 455555555778888885443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.75  E-value=0.025  Score=59.99  Aligned_cols=238  Identities=16%  Similarity=0.129  Sum_probs=133.0

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      .....+...-..-.+++|.+||+++++ ..+|.|++++..+ + ..+.                    +..      ...
T Consensus        19 ~~~~~va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G-~-~~~~--------------------~~~------v~~   69 (354)
T 3a9g_A           19 FKISEVASDLEVPWSIAPLGGGRYLVT-ERPGRLVLISPSG-K-KLVA--------------------SFD------VAN   69 (354)
T ss_dssp             EEEEEEECSCSCEEEEEEEETTEEEEE-ETTTEEEEECSSC-E-EEEE--------------------ECC------CCC
T ss_pred             eEEEEEeCCCCCCeEEEEcCCCeEEEE-eCCCEEEEEeCCC-c-eEee--------------------ccc------eee
Confidence            444455555567889999999986555 4558888886322 1 1100                    000      011


Q ss_pred             cccCCEEEEEEcCC---CCEEEEEeC----C----CeEEEEECCCC-------eEE-EEEec-CCCCEEEEEEcCCCCEE
Q psy14440        458 GHEGPVRKLSFSPD---RSLLLSCSQ----D----NTIRLWSLLLW-------RCL-VVYKG-HGHPVWDIKFSPHGYYF  517 (711)
Q Consensus       458 ~h~~~V~~l~fspd---g~~L~s~s~----D----g~V~iwdl~t~-------~~~-~~~~~-h~~~V~~v~~sp~g~~l  517 (711)
                      ...+....|+|+|+   +..|+++..    +    +.|..|+....       +.+ ..+.. ..+....++|.|+|.++
T Consensus        70 ~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Ly  149 (354)
T 3a9g_A           70 VGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLY  149 (354)
T ss_dssp             STTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEE
T ss_pred             cCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEE
Confidence            12345788999997   555555433    2    56777776543       111 11221 12234679999999877


Q ss_pred             EEEEC-------------CCeEEEEECCCCc-------eeEEe-ecCCCCeeEEEEcC-CCCEEEEEEcCC---cEEEEE
Q psy14440        518 ASAGH-------------DRMARLWATDSYH-------PLRLF-VGHYSDVDCVQFHP-NSNYVATGSSDR---TIRLWD  572 (711)
Q Consensus       518 ~sgs~-------------Dg~i~lwd~~~~~-------~~~~~-~~h~~~V~~v~~sp-~~~~latgs~Dg---~I~iwD  572 (711)
                      ++.+.             .|.|.-++.+..-       ...++ .++ .....++|++ +++.+++-...+   .|.+. 
T Consensus       150 vt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i-  227 (354)
T 3a9g_A          150 ITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNII-  227 (354)
T ss_dssp             EECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEE-
T ss_pred             EEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEe-
Confidence            66442             2456666655320       01222 233 3356899999 566555433222   13332 


Q ss_pred             CCCCc------------------EEEEeeCCCCCeEEEEEe-------cCCCEEEEEeCCCcEEEEECCCC-eEE--EEe
Q psy14440        573 CVTGS------------------HVRLLTGHKAPVYALSFS-------VCGRFLASAGGDGNVHMWDLSNG-HLL--TLL  624 (711)
Q Consensus       573 ~~~~~------------------~v~~~~~h~~~I~~la~s-------pdg~~Lasgs~Dg~I~iwDl~sg-~~i--~~l  624 (711)
                       ..|.                  .+..+.........++|.       .+|.++++.-..+.|...++... +..  ..+
T Consensus       228 -~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~  306 (354)
T 3a9g_A          228 -LKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTF  306 (354)
T ss_dssp             -CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEE
T ss_pred             -cCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeee
Confidence             2221                  122221123457788883       56777777667778998888753 332  223


Q ss_pred             -eCCCCCEEEEEEeCCCCEEEEEe
Q psy14440        625 -TGHTDVVRALCFSRDGNILASSG  647 (711)
Q Consensus       625 -~~h~~~V~sl~fspdg~~Lasgs  647 (711)
                       .+....+..+++.+||.++++..
T Consensus       307 ~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          307 FKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             ccCCCCCeeEEEECCCCcEEEEEe
Confidence             22245789999999998777654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.72  E-value=0.0054  Score=64.20  Aligned_cols=151  Identities=13%  Similarity=0.149  Sum_probs=97.0

Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL--LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH  535 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl--~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~  535 (711)
                      ++.+.+.++.+.+++.+++++...+..+-+|-  .+++.+.  ......+..+.+.+++..+ .++.+|.+++.+.+.++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~  236 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSE  236 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEE
T ss_pred             CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCC
Confidence            45567899999999887776654443444453  4566553  2456678899999888655 55567888777544333


Q ss_pred             eeEEee-c---CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC---CCCCeEEEEEecCCCEEEEEeCCC
Q psy14440        536 PLRLFV-G---HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG---HKAPVYALSFSVCGRFLASAGGDG  608 (711)
Q Consensus       536 ~~~~~~-~---h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~---h~~~I~~la~spdg~~Lasgs~Dg  608 (711)
                      ....+. .   +...+.++.+.+++..++++. +|.| ++....|+.-..+..   ....++++.|..+++ +++++.+|
T Consensus       237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G  313 (327)
T 2xbg_A          237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKG  313 (327)
T ss_dssp             EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTT
T ss_pred             eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCc
Confidence            222222 1   223588999998877766655 6766 455555655554442   345688899986555 55666788


Q ss_pred             cEEEEE
Q psy14440        609 NVHMWD  614 (711)
Q Consensus       609 ~I~iwD  614 (711)
                      .|.-++
T Consensus       314 ~i~~~~  319 (327)
T 2xbg_A          314 ILLRYV  319 (327)
T ss_dssp             EEEEEC
T ss_pred             eEEEEc
Confidence            877765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.67  E-value=0.083  Score=55.64  Aligned_cols=245  Identities=14%  Similarity=0.102  Sum_probs=134.8

Q ss_pred             CceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEE
Q psy14440        376 PSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRT  455 (711)
Q Consensus       376 ps~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  455 (711)
                      +-.....+...-..-+.++|.+||+++++--..|.|++++..+.+...+..                    ..     ..
T Consensus        20 ~~~~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~--------------------~~-----~v   74 (347)
T 3das_A           20 SVKVLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGE--------------------VP-----GV   74 (347)
T ss_dssp             CEEEEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE--------------------CT-----TC
T ss_pred             CCceeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecc--------------------cC-----ce
Confidence            334445566667788999999999988777668888888754332211100                    00     00


Q ss_pred             eecccCCEEEEEEcCC---CCEEEEE---eCCCeEEEEECCC----------CeEEE-EEe-cCCCCEEEEEEcCCCCEE
Q psy14440        456 LVGHEGPVRKLSFSPD---RSLLLSC---SQDNTIRLWSLLL----------WRCLV-VYK-GHGHPVWDIKFSPHGYYF  517 (711)
Q Consensus       456 l~~h~~~V~~l~fspd---g~~L~s~---s~Dg~V~iwdl~t----------~~~~~-~~~-~h~~~V~~v~~sp~g~~l  517 (711)
                      +....+....|+|+|+   +..|+.+   ..++.|.-|.+..          .+.+. .+. ...+....|.|.++|.++
T Consensus        75 ~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Ly  154 (347)
T 3das_A           75 SPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLY  154 (347)
T ss_dssp             CCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEE
T ss_pred             eecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEE
Confidence            1123456788999885   3444433   2344566665543          12222 121 122334579999999877


Q ss_pred             EEEEC-------------CCeEEEEECCCCc-------eeEEee-cCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCC
Q psy14440        518 ASAGH-------------DRMARLWATDSYH-------PLRLFV-GHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVT  575 (711)
Q Consensus       518 ~sgs~-------------Dg~i~lwd~~~~~-------~~~~~~-~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~  575 (711)
                      ++.+.             .|.|.-.+.+..-       ...++. +|. ....++|+|++.+.++-. .|+.-.|--+..
T Consensus       155 vt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~  233 (347)
T 3das_A          155 AGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKP  233 (347)
T ss_dssp             EECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECT
T ss_pred             EEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcC
Confidence            77542             3455555554320       112233 443 456899999877655432 233223322222


Q ss_pred             Cc------------------EEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE----EEEeeCCCCCEEE
Q psy14440        576 GS------------------HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL----LTLLTGHTDVVRA  633 (711)
Q Consensus       576 ~~------------------~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~----i~~l~~h~~~V~s  633 (711)
                      |.                  .+..+..+......++|. +|..+...-..+.|....+..+..    ...+.+..+.+.+
T Consensus       234 G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~d  312 (347)
T 3das_A          234 GDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRT  312 (347)
T ss_dssp             TCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEE
T ss_pred             CCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccE
Confidence            21                  122222222356677776 465555555566777777655432    2233444567999


Q ss_pred             EEEeCCCCEEEEEe
Q psy14440        634 LCFSRDGNILASSG  647 (711)
Q Consensus       634 l~fspdg~~Lasgs  647 (711)
                      ++..+||.++++..
T Consensus       313 v~~~pDG~lyv~td  326 (347)
T 3das_A          313 VAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEETTEEEEEEC
T ss_pred             EEECCCCcEEEEEc
Confidence            99999998766654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.64  E-value=0.00013  Score=84.95  Aligned_cols=218  Identities=12%  Similarity=-0.023  Sum_probs=127.1

Q ss_pred             cEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCC----CeEEEEEecCCCCEEEEEEcC-C
Q psy14440        440 ILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCS-QDNTIRLWSLLL----WRCLVVYKGHGHPVWDIKFSP-H  513 (711)
Q Consensus       440 ~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s-~Dg~V~iwdl~t----~~~~~~~~~h~~~V~~v~~sp-~  513 (711)
                      ..|+.++..+......+. ....+.+++|++.+..|+.+. ..+.|+.+++..    ......+.........|++.. .
T Consensus       386 ~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~  464 (699)
T 1n7d_A          386 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  464 (699)
T ss_dssp             TC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred             cceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence            455666665544333322 234567899998777666654 457899999875    222222211122344677775 4


Q ss_pred             CCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEc-C-CcEEEEECCCCcEEEEeeCCCCCeEE
Q psy14440        514 GYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS-D-RTIRLWDCVTGSHVRLLTGHKAPVYA  591 (711)
Q Consensus       514 g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~-D-g~I~iwD~~~~~~v~~~~~h~~~I~~  591 (711)
                      ++++++-...+.|.+++++.......+.........|+++|.+.+|+.+.. . +.|.++++........+...-...+.
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnG  544 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  544 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCC
T ss_pred             CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccE
Confidence            455555556788999998865544444333456788999986655554432 2 67888877543322222223345678


Q ss_pred             EEEecCCCEEEEE-eCCCcEEEEECCCCeEEEEee--CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        592 LSFSVCGRFLASA-GGDGNVHMWDLSNGHLLTLLT--GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       592 la~spdg~~Lasg-s~Dg~I~iwDl~sg~~i~~l~--~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      |+|++++..|+.+ +..+.|.++|+........+.  .......+|++..+ .++++....+.|..+|..+
T Consensus       545 lavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          545 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             EEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred             EEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence            9999876655544 456789999986433322222  11233445666543 4555555678899988643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.63  E-value=0.0028  Score=65.99  Aligned_cols=159  Identities=8%  Similarity=0.064  Sum_probs=111.6

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceeEEeecCC-------CCeeEEEE---cCCCCEEEEEEc----
Q psy14440        500 GHGHPVWDIKFSPHGYYFASAG-HDRMARLWATDSYHPLRLFVGHY-------SDVDCVQF---HPNSNYVATGSS----  564 (711)
Q Consensus       500 ~h~~~V~~v~~sp~g~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~h~-------~~V~~v~~---sp~~~~latgs~----  564 (711)
                      .....-.+++|......|..++ ..++|..|+...+..........       ..+..+.|   .++++++++...    
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            3344445789988666666666 79999999998654433322221       13579999   688777775442    


Q ss_pred             ---------CCcEEEEECC---CCcEEEEeeC-------------CCCCeEEEEEecCCCEEEEEeCC-CcEEEEECCCC
Q psy14440        565 ---------DRTIRLWDCV---TGSHVRLLTG-------------HKAPVYALSFSVCGRFLASAGGD-GNVHMWDLSNG  618 (711)
Q Consensus       565 ---------Dg~I~iwD~~---~~~~v~~~~~-------------h~~~I~~la~spdg~~Lasgs~D-g~I~iwDl~sg  618 (711)
                               +..|..||+.   +++.+....-             -......++..++|+..++++.. +.|..++.. |
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G  168 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-G  168 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-S
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-C
Confidence                     6779999999   7877655431             11347899999999999988888 888888864 3


Q ss_pred             eEEEEee-C-----CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        619 HLLTLLT-G-----HTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       619 ~~i~~l~-~-----h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      +.+..+. .     .....+.|+++|+|+.|++...+|.|..+|+..
T Consensus       169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            3333221 1     122467999999999888887799999999884

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.61  E-value=0.039  Score=58.38  Aligned_cols=249  Identities=11%  Similarity=0.104  Sum_probs=132.3

Q ss_pred             EEEEecCCCceEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        380 CYTLLNARQQVTCAEISEDVS-ILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~-~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      ...+...-..-..++|.+||+ +++ +...|.|++++..+.....+..   .                 .     .....
T Consensus        10 ~~~va~~l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~---~-----------------~-----~v~~~   63 (353)
T 2g8s_A           10 VEVLQDKLDHPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSG---V-----------------P-----DVWAH   63 (353)
T ss_dssp             EEEEEEEESSEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBS---C-----------------C-----CCCCS
T ss_pred             EEEEECCCCCcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecC---C-----------------c-----ccccC
Confidence            333333345678999999999 554 4567889888753221100000   0                 0     00111


Q ss_pred             ccCCEEEEEEcCC---CCEEEEEe-C-------CCeEEEEECCCC-----eEEEEEec------CCCCEEEEEEcCCCCE
Q psy14440        459 HEGPVRKLSFSPD---RSLLLSCS-Q-------DNTIRLWSLLLW-----RCLVVYKG------HGHPVWDIKFSPHGYY  516 (711)
Q Consensus       459 h~~~V~~l~fspd---g~~L~s~s-~-------Dg~V~iwdl~t~-----~~~~~~~~------h~~~V~~v~~sp~g~~  516 (711)
                      ..+....++|+|+   +..|+.+. .       ...|..|++...     .....+..      ..+.-..+.|.|+|.+
T Consensus        64 g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~L  143 (353)
T 2g8s_A           64 GQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYL  143 (353)
T ss_dssp             TTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEE
T ss_pred             CCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcE
Confidence            2345678888885   44454442 2       234666665432     11112221      1122457999999965


Q ss_pred             EEEEEC-------------CCeEEEEECCCCc------------eeEEeecCCCCeeEEEEcC-CCCEEEEEEc-CCcEE
Q psy14440        517 FASAGH-------------DRMARLWATDSYH------------PLRLFVGHYSDVDCVQFHP-NSNYVATGSS-DRTIR  569 (711)
Q Consensus       517 l~sgs~-------------Dg~i~lwd~~~~~------------~~~~~~~h~~~V~~v~~sp-~~~~latgs~-Dg~I~  569 (711)
                      +++.+.             .|.|.-++.+..-            ...++..-......++|++ +++.+++-.. ++.=.
T Consensus       144 yv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~de  223 (353)
T 2g8s_A          144 FIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDE  223 (353)
T ss_dssp             EEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEE
T ss_pred             EEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcE
Confidence            555443             2467667765421            1222322223467899999 5544443221 11122


Q ss_pred             EEECCCCc-------------------------------EEEEeeCCCCCeEEEEEec-------CCCEEEEEeCCCcEE
Q psy14440        570 LWDCVTGS-------------------------------HVRLLTGHKAPVYALSFSV-------CGRFLASAGGDGNVH  611 (711)
Q Consensus       570 iwD~~~~~-------------------------------~v~~~~~h~~~I~~la~sp-------dg~~Lasgs~Dg~I~  611 (711)
                      |.-+..+.                               .+..+. +......++|..       +|+++++.-..+.|.
T Consensus       224 i~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~  302 (353)
T 2g8s_A          224 INIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVI  302 (353)
T ss_dssp             EECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEE
T ss_pred             EeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEE
Confidence            22222111                               111222 234567788864       467777766778888


Q ss_pred             EEECCCCeEEEEe---eCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEeC
Q psy14440        612 MWDLSNGHLLTLL---TGHTDVVRALCFSRDGNILASSG-QDCSVKLWDF  657 (711)
Q Consensus       612 iwDl~sg~~i~~l---~~h~~~V~sl~fspdg~~Lasgs-~Dg~V~iWdl  657 (711)
                      ..++..++.+...   ......+..+++.+||.++++.. .+|  +||.+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          303 VMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             EEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEEEE
T ss_pred             EEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEEEE
Confidence            8888776554332   22235789999999999666543 344  45544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.60  E-value=0.0062  Score=67.33  Aligned_cols=195  Identities=12%  Similarity=0.132  Sum_probs=121.0

Q ss_pred             CEEEEEEcC-CCCEEEEEeC-CCeEEEEECCCCeEEEEEecC---CCCEEEEEE-------cCCCCEEEEEECCC-----
Q psy14440        462 PVRKLSFSP-DRSLLLSCSQ-DNTIRLWSLLLWRCLVVYKGH---GHPVWDIKF-------SPHGYYFASAGHDR-----  524 (711)
Q Consensus       462 ~V~~l~fsp-dg~~L~s~s~-Dg~V~iwdl~t~~~~~~~~~h---~~~V~~v~~-------sp~g~~l~sgs~Dg-----  524 (711)
                      ....|+|+| ++..|+.+.. .+.|++.|+.++.........   ......++|       +++|.+++++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467899998 4555655554 467999999887776655432   235889999       99998666666543     


Q ss_pred             --eEEEEECCC-Ccee-----EEeecCCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECC-------CCcE----------
Q psy14440        525 --MARLWATDS-YHPL-----RLFVGHYSDVDCVQFHPN-SNYVATGSSDRTIRLWDCV-------TGSH----------  578 (711)
Q Consensus       525 --~i~lwd~~~-~~~~-----~~~~~h~~~V~~v~~sp~-~~~latgs~Dg~I~iwD~~-------~~~~----------  578 (711)
                        .|.+++... +...     +.+.. ......++++|+ +.++++-..++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              255665443 1211     22322 234567889994 5555566678889999987       5543          


Q ss_pred             -EEE-ee-CCCCCeEEEEEecCCCEEEEE-eCCCcEEEEEC--CCCeEE--EEeeCC---C------------CCEE-EE
Q psy14440        579 -VRL-LT-GHKAPVYALSFSVCGRFLASA-GGDGNVHMWDL--SNGHLL--TLLTGH---T------------DVVR-AL  634 (711)
Q Consensus       579 -v~~-~~-~h~~~I~~la~spdg~~Lasg-s~Dg~I~iwDl--~sg~~i--~~l~~h---~------------~~V~-sl  634 (711)
                       ... +. +.....+.|+|+|+|++|+.+ +..++|+.+|.  ..+...  ..+.+.   .            .... .+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             112 22 234456899999999965555 45678888654  344321  222221   1            1244 45


Q ss_pred             EEe-------CCCCEEEEEeCCCcEEEEeC
Q psy14440        635 CFS-------RDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       635 ~fs-------pdg~~Lasgs~Dg~V~iWdl  657 (711)
                      +..       .+|.++++-...++||.++.
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~  408 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP  408 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEeC
Confidence            554       56777777777888999983

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.52  E-value=0.0053  Score=63.00  Aligned_cols=181  Identities=13%  Similarity=0.129  Sum_probs=97.0

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCC-----CeEEEEEecCCCCEEEEEEcCCCCEEEEEECC-----CeEEEEECCCCc
Q psy14440        471 DRSLLLSCSQD-----NTIRLWSLLL-----WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD-----RMARLWATDSYH  535 (711)
Q Consensus       471 dg~~L~s~s~D-----g~V~iwdl~t-----~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D-----g~i~lwd~~~~~  535 (711)
                      ++..++.|+.+     ..+.+||..+     ++.+..+.........+.+  +++.++.|+.+     ..+.+||..+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            56666666654     4588999865     4444322221222222222  56677777654     368888887654


Q ss_pred             ee--EEeecCCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCCCcEEEEee--CCCCCeEEEEEecCCCEEEEEeC
Q psy14440        536 PL--RLFVGHYSDVDCVQFHPNSNYVATGSSD-----RTIRLWDCVTGSHVRLLT--GHKAPVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       536 ~~--~~~~~h~~~V~~v~~sp~~~~latgs~D-----g~I~iwD~~~~~~v~~~~--~h~~~I~~la~spdg~~Lasgs~  606 (711)
                      =.  ..+........++.+  +++.++.|+.+     ..+.+||..+++-...-.  .......++.  -++++++.|+.
T Consensus       140 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~  215 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGF  215 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred             EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCC
Confidence            22  222111111222222  56677777654     468899988775433211  1111222222  35777777776


Q ss_pred             C-----CcEEEEECCCCeEEEEe--eCCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEeCCC
Q psy14440        607 D-----GNVHMWDLSNGHLLTLL--TGHTDVVRALCFSRDGNILASSGQDC-----SVKLWDFAK  659 (711)
Q Consensus       607 D-----g~I~iwDl~sg~~i~~l--~~h~~~V~sl~fspdg~~Lasgs~Dg-----~V~iWdl~~  659 (711)
                      +     ..|.+||+.+.+-...-  .........+.  -++++++.||.++     .|.+||+.+
T Consensus       216 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          216 DGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             CSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred             CCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCC
Confidence            4     46899999887644332  11111112222  2677888887663     567777764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.52  E-value=0.16  Score=62.34  Aligned_cols=265  Identities=15%  Similarity=0.174  Sum_probs=146.3

Q ss_pred             CCceEEEEECCC------CCEEEEEeC-CCeEEEEeCCCCceeeeccC-----c---------cccccccccCCcEEEE-
Q psy14440        387 RQQVTCAEISED------VSILAVGFS-ESYIKLWSLVPQKLKAMKSS-----D---------QLQDIEMECDDILVRI-  444 (711)
Q Consensus       387 ~~~V~~l~fs~d------g~~LatG~~-dg~I~vWdl~~~~~~~~~~~-----~---------~~~~l~~~~~d~~i~i-  444 (711)
                      .+.|.|+++.+.      ++++|+|+. |++|+|+++.+.+......-     +         ....+.++-.+|.+.. 
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            568999999863      479999997 99999999976442221100     0         1123445555666533 


Q ss_pred             -EecCCCeeEE---EeecccCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCCCCE-EEEEEcCC--CCE
Q psy14440        445 -MDERNAETTR---TLVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV-WDIKFSPH--GYY  516 (711)
Q Consensus       445 -~d~~~~~~~~---~l~~h~~~V~~l~fspdg~-~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V-~~v~~sp~--g~~  516 (711)
                       +|..++....   .+.| ..+|.-..|...|. .++++| +....+|.-.. +.... .-....+ ....|+..  ..-
T Consensus       633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~-~l~~s-~l~~~~v~~~~~F~se~~~~g  708 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNH-KLVFS-NVNLKEVNYMCPLNSDGYPDS  708 (1158)
T ss_dssp             EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSS-SEEEE-EBSSSCCCEEEEECCSSSTTE
T ss_pred             EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCC-ceEEe-ccChHHhceEeccCcccCCCc
Confidence             4444444332   2233 34555555554444 344444 44444444332 22211 1112222 33445432  234


Q ss_pred             EEEEECCCeEEEEECCCCc--eeEEeecCCCCeeEEEEcCCCCEEEEEEcC-----------------------------
Q psy14440        517 FASAGHDRMARLWATDSYH--PLRLFVGHYSDVDCVQFHPNSNYVATGSSD-----------------------------  565 (711)
Q Consensus       517 l~sgs~Dg~i~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~latgs~D-----------------------------  565 (711)
                      ++..+ ++.++|..++...  .++.+. -...+..+++||+.+.++.++.+                             
T Consensus       709 ~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  786 (1158)
T 3ei3_A          709 LALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS  786 (1158)
T ss_dssp             EEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCC
T ss_pred             EEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccc
Confidence            54443 4569998876433  233332 23567888999877765554321                             


Q ss_pred             --------------------CcEEEEECCCCcEEEEeeC-CCCCeEEEEE---ecC-CCEEEEEe----------CCCcE
Q psy14440        566 --------------------RTIRLWDCVTGSHVRLLTG-HKAPVYALSF---SVC-GRFLASAG----------GDGNV  610 (711)
Q Consensus       566 --------------------g~I~iwD~~~~~~v~~~~~-h~~~I~~la~---spd-g~~Lasgs----------~Dg~I  610 (711)
                                          +.|++.|-.+++.+..+.- ....+.|++.   ..+ ..+|++|+          ..|.|
T Consensus       787 ~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri  866 (1158)
T 3ei3_A          787 KLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRI  866 (1158)
T ss_dssp             CCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEE
T ss_pred             ccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEE
Confidence                                2366777777776655542 2334555543   222 46888886          34899


Q ss_pred             EEEECCCCeEEEEee-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        611 HMWDLSNGHLLTLLT-GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       611 ~iwDl~sg~~i~~l~-~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      ++|++..++.....+ ...+.|++|+-- +|++|+ |- ..+|++|++...
T Consensus       867 ~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla-~i-g~~l~vy~l~~~  914 (1158)
T 3ei3_A          867 VVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLA-SI-NSTVRLYEWTTE  914 (1158)
T ss_dssp             EEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEE-EE-TTEEEEEEECTT
T ss_pred             EEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEE-Ec-CCEEEEEECCCC
Confidence            999997654332221 235788888744 454444 33 479999999754

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.47  E-value=0.0002  Score=83.42  Aligned_cols=174  Identities=11%  Similarity=0.009  Sum_probs=102.3

Q ss_pred             EEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE-CC-CeEEEEECCCCceeEE
Q psy14440        463 VRKLSFSPDRSLL-LSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG-HD-RMARLWATDSYHPLRL  539 (711)
Q Consensus       463 V~~l~fspdg~~L-~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs-~D-g~i~lwd~~~~~~~~~  539 (711)
                      ..+|++.+.+..| ++-...+.|.++++........+.........|++.|.+.+|+.+. .. +.|.+++++.......
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l  534 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  534 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence            3457777544444 4445567899999875544433332234456788998654444433 22 6788877765433333


Q ss_pred             eecCCCCeeEEEEcCCCCEEE-EEEcCCcEEEEECCCCcEEEEeeC--CCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy14440        540 FVGHYSDVDCVQFHPNSNYVA-TGSSDRTIRLWDCVTGSHVRLLTG--HKAPVYALSFSVCGRFLASAGGDGNVHMWDLS  616 (711)
Q Consensus       540 ~~~h~~~V~~v~~sp~~~~la-tgs~Dg~I~iwD~~~~~~v~~~~~--h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~  616 (711)
                      +.........|+|++++..|+ +-+..+.|.++|+........+..  .......|++..+ .++++....+.|..+|..
T Consensus       535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred             EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence            333345567899998755554 444567899999864433222221  1233445666543 444455566899999988


Q ss_pred             CCeEEEEeeCCCCCEEEEEEe
Q psy14440        617 NGHLLTLLTGHTDVVRALCFS  637 (711)
Q Consensus       617 sg~~i~~l~~h~~~V~sl~fs  637 (711)
                      +|+.+..+.......++|++.
T Consensus       614 ~G~~~~~i~~~~~~P~~i~v~  634 (699)
T 1n7d_A          614 TGSDVNLLAENLLSPEDMVLF  634 (699)
T ss_dssp             TEEEEECCCTTCSSCCCCCBC
T ss_pred             CCCceEEeecCCCCCcEEEEe
Confidence            888887775433334444443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.47  E-value=0.033  Score=58.90  Aligned_cols=192  Identities=14%  Similarity=0.103  Sum_probs=102.9

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE--e---cCCCCEEEEEEcCC---CCEEEEE-ECC-----CeE
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY--K---GHGHPVWDIKFSPH---GYYFASA-GHD-----RMA  526 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~--~---~h~~~V~~v~~sp~---g~~l~sg-s~D-----g~i  526 (711)
                      ..-.+++|.++|++ +++..+|.|++++  .++.....  .   ........|+|+|+   +..|.++ +..     +.|
T Consensus        31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            34679999999985 4456679999998  44432211  1   12356789999998   4444443 322     567


Q ss_pred             EEEECCCCce-----e-EEee---cCCCCeeEEEEcCCCCEEEEEEc-------------CCcEEEEECCCC--------
Q psy14440        527 RLWATDSYHP-----L-RLFV---GHYSDVDCVQFHPNSNYVATGSS-------------DRTIRLWDCVTG--------  576 (711)
Q Consensus       527 ~lwd~~~~~~-----~-~~~~---~h~~~V~~v~~sp~~~~latgs~-------------Dg~I~iwD~~~~--------  576 (711)
                      ..|+......     + ..+.   +.......++|.|+|.++++.+.             .|.|.-+|....        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            7787764321     1 1122   11123468999999976665432             145655655420        


Q ss_pred             ----cEEEE-eeCCCCCeEEEEEec-CCCEEEEEeCCCcE------EEEECCCCe------------------EEEEeeC
Q psy14440        577 ----SHVRL-LTGHKAPVYALSFSV-CGRFLASAGGDGNV------HMWDLSNGH------------------LLTLLTG  626 (711)
Q Consensus       577 ----~~v~~-~~~h~~~I~~la~sp-dg~~Lasgs~Dg~I------~iwDl~sg~------------------~i~~l~~  626 (711)
                          ..... -.++. ....++|++ +|+++++-...+.+      .|.-+..|.                  .+..+. 
T Consensus       188 ~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-  265 (352)
T 2ism_A          188 GRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-  265 (352)
T ss_dssp             TCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred             CCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence                01111 12333 246789999 66655544333331      122222221                  122222 


Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        627 HTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       627 h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      +......++| .+|+++++.-..+.|...++.
T Consensus       266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~  296 (352)
T 2ism_A          266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLE  296 (352)
T ss_dssp             TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEE
T ss_pred             CCCCCcceEE-ECCEEEEEECCCCEEEEEEEC
Confidence            2234567787 366666665556667776664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.44  E-value=0.018  Score=65.87  Aligned_cols=205  Identities=10%  Similarity=-0.032  Sum_probs=119.1

Q ss_pred             CceEEEEECCCCCEEE-EEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEE
Q psy14440        388 QQVTCAEISEDVSILA-VGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKL  466 (711)
Q Consensus       388 ~~V~~l~fs~dg~~La-tG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l  466 (711)
                      .....++|++.+..|. +-...+.|..+++++...                              ....+........++
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~------------------------------~~~v~~~~~~~P~Gl   89 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------------------------------VQNVVVSGLLSPDGL   89 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------------------CEEEECSSCSCEEEE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc------------------------------eEEEEeCCCCCcCeE
Confidence            4567888887555444 333456677666643210                              011122222467899


Q ss_pred             EEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceeEEeecC
Q psy14440        467 SFSPDRSLLLSC-SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH--DRMARLWATDSYHPLRLFVGH  543 (711)
Q Consensus       467 ~fspdg~~L~s~-s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~--Dg~i~lwd~~~~~~~~~~~~h  543 (711)
                      ++...++.|+.+ ...+.|.+.++.................+|++.|.+.++..+..  .+.|...+++...........
T Consensus        90 AvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~  169 (619)
T 3s94_A           90 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE  169 (619)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred             EEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC
Confidence            999866655554 55788999999765443444344455678999986555554443  467777777754444444344


Q ss_pred             CCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy14440        544 YSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLT  622 (711)
Q Consensus       544 ~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~  622 (711)
                      ......+++++++..|+.+. ..+.|..+|+..........+.......|++..+ ...++-...+.|...|..+|+...
T Consensus       170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~  248 (619)
T 3s94_A          170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR  248 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred             CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence            56678999998766665554 4678999998654333222222223346677644 333344456789999987775443


Q ss_pred             E
Q psy14440        623 L  623 (711)
Q Consensus       623 ~  623 (711)
                      .
T Consensus       249 ~  249 (619)
T 3s94_A          249 E  249 (619)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.41  E-value=0.16  Score=58.18  Aligned_cols=164  Identities=17%  Similarity=0.102  Sum_probs=106.4

Q ss_pred             cCCEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcC-CCCEEEEEECCC--eEEEEECCCCc
Q psy14440        460 EGPVRKLSFSPDRSLLL-SCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDR--MARLWATDSYH  535 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~-s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg--~i~lwd~~~~~  535 (711)
                      .+.+.++++...++.|+ +.+..+.|.+.++........+........+|++.| .|..+++-....  .|...+++...
T Consensus       388 ~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~  467 (628)
T 4a0p_A          388 EIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE  467 (628)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS
T ss_pred             cCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC
Confidence            34678999998877655 555678899999874333333344456789999999 565555544333  56666776544


Q ss_pred             eeEEeecCCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCCCcEEEEee-CCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy14440        536 PLRLFVGHYSDVDCVQFHPNSNYVATGSS-DRTIRLWDCVTGSHVRLLT-GHKAPVYALSFSVCGRFLASAGGDGNVHMW  613 (711)
Q Consensus       536 ~~~~~~~h~~~V~~v~~sp~~~~latgs~-Dg~I~iwD~~~~~~v~~~~-~h~~~I~~la~spdg~~Lasgs~Dg~I~iw  613 (711)
                      ............+.+++++.++.|+.+.. .+.|..+|+.. ...+.+. ........|++.. +..+++-...+.|...
T Consensus       468 ~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG-~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~  545 (628)
T 4a0p_A          468 REVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG-ANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKI  545 (628)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             cEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCC-CceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEE
Confidence            44444444567789999998777776654 57899999854 3344443 3344567777754 4444444455678888


Q ss_pred             ECCCCeEEEEee
Q psy14440        614 DLSNGHLLTLLT  625 (711)
Q Consensus       614 Dl~sg~~i~~l~  625 (711)
                      |..+|+....+.
T Consensus       546 ~k~~G~~~~~i~  557 (628)
T 4a0p_A          546 DMTGREGRTKVQ  557 (628)
T ss_dssp             ETTSSSCCEEEE
T ss_pred             ECcCCCCcEEEe
Confidence            877776555444

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.40  E-value=0.0095  Score=61.12  Aligned_cols=181  Identities=14%  Similarity=0.181  Sum_probs=95.2

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCeEEEE--EecCCCCEEEEEEcCCCCEEEEEECCC-----eEEEEECCCCceeE
Q psy14440        471 DRSLLLSCSQD-----NTIRLWSLLLWRCLVV--YKGHGHPVWDIKFSPHGYYFASAGHDR-----MARLWATDSYHPLR  538 (711)
Q Consensus       471 dg~~L~s~s~D-----g~V~iwdl~t~~~~~~--~~~h~~~V~~v~~sp~g~~l~sgs~Dg-----~i~lwd~~~~~~~~  538 (711)
                      ++..++.|+.+     ..+.+||..+.+-...  +.........+.+  +++.++.|+.++     .+.+||..+.+=..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            56666676654     3588899876543222  2111111222222  567777777553     57788887653222


Q ss_pred             E--eecCCCCeeEEEEcCCCCEEEEEEcC-------CcEEEEECCCCcEEEE--eeCCCCCeEEEEEecCCCEEEEEeCC
Q psy14440        539 L--FVGHYSDVDCVQFHPNSNYVATGSSD-------RTIRLWDCVTGSHVRL--LTGHKAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       539 ~--~~~h~~~V~~v~~sp~~~~latgs~D-------g~I~iwD~~~~~~v~~--~~~h~~~I~~la~spdg~~Lasgs~D  607 (711)
                      .  +...... .+++.. +++.++.|+.+       ..+.+||..+++-...  +........++.  -++++++.|+.+
T Consensus       139 ~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  214 (302)
T 2xn4_A          139 VAPMNTRRSS-VGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHD  214 (302)
T ss_dssp             ECCCSSCCBS-CEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBS
T ss_pred             cCCCCCcccC-ceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCC
Confidence            1  1111111 222222 56666666542       3588999887653332  111112222222  267777787764


Q ss_pred             -----CcEEEEECCCCeEEEEe--eCCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEeCCC
Q psy14440        608 -----GNVHMWDLSNGHLLTLL--TGHTDVVRALCFSRDGNILASSGQDC-----SVKLWDFAK  659 (711)
Q Consensus       608 -----g~I~iwDl~sg~~i~~l--~~h~~~V~sl~fspdg~~Lasgs~Dg-----~V~iWdl~~  659 (711)
                           ..+.+||+.+.+-...-  ....... +++ .-++++++.||.++     .|.+||+.+
T Consensus       215 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          215 GPLVRKSVEVYDPTTNAWRQVADMNMCRRNA-GVC-AVNGLLYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             SSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             CCcccceEEEEeCCCCCEeeCCCCCCccccC-eEE-EECCEEEEECCcCCCcccccEEEEcCCC
Confidence                 36999999887643322  1111111 122 22677888888664     488888765

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.38  E-value=0.22  Score=53.50  Aligned_cols=247  Identities=10%  Similarity=0.097  Sum_probs=162.0

Q ss_pred             CCeEEEEeCCCCce-eee-------ccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEe
Q psy14440        408 ESYIKLWSLVPQKL-KAM-------KSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCS  479 (711)
Q Consensus       408 dg~I~vWdl~~~~~-~~~-------~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s  479 (711)
                      +..|.|-|+....- ...       ..++....++... ...++++|..+...++.+.-.. .|.--.|-.+. .|+-.+
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~-~l~lVT  123 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT  123 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-EEEEEC
T ss_pred             CCeEEEEECCCCCcceecccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-eEEEEc
Confidence            34677888765321 111       1122233444443 7889999999998888877544 56677786544 444443


Q ss_pred             CCCeEEEEECCC-CeEEEEEecC----CCCEEEEEEcCCCCEEEEEE-------CCCeEEEEECCCCceeEEeecCCCCe
Q psy14440        480 QDNTIRLWSLLL-WRCLVVYKGH----GHPVWDIKFSPHGYYFASAG-------HDRMARLWATDSYHPLRLFVGHYSDV  547 (711)
Q Consensus       480 ~Dg~V~iwdl~t-~~~~~~~~~h----~~~V~~v~~sp~g~~l~sgs-------~Dg~i~lwd~~~~~~~~~~~~h~~~V  547 (711)
                       +..|+-|++.. ......+..|    +..|..-..+++.++++..|       -.|.+.+|+.+.+ ..+.+.||.+..
T Consensus       124 -~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F  201 (494)
T 1bpo_A          124 -DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF  201 (494)
T ss_dssp             -SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred             -CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence             35699999964 3556666655    45677777888888877654       2477889998864 456677876655


Q ss_pred             eEEEEcCCC---CEEEEEEc---CCcEEEEECCCC---------cEEEEeeC---CCCCeEEEEEecCCCEEEEEeCCCc
Q psy14440        548 DCVQFHPNS---NYVATGSS---DRTIRLWDCVTG---------SHVRLLTG---HKAPVYALSFSVCGRFLASAGGDGN  609 (711)
Q Consensus       548 ~~v~~sp~~---~~latgs~---Dg~I~iwD~~~~---------~~v~~~~~---h~~~I~~la~spdg~~Lasgs~Dg~  609 (711)
                      ..+.+..+.   ..++.+..   .+.++|.++...         +.+..+..   -..--.++..|+....++.-+.-|.
T Consensus       202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~  281 (494)
T 1bpo_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY  281 (494)
T ss_dssp             EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE
T ss_pred             EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCce
Confidence            544443221   23333433   278899988532         11112211   2334567888888888999999999


Q ss_pred             EEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        610 VHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       610 I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      |++||+.+|.++..-+-....|..-+-+.+..=++.....|.|.--.++.
T Consensus       282 i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          282 IHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             EEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence            99999999999988887777777766666656666667888877766654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.38  E-value=0.018  Score=61.02  Aligned_cols=161  Identities=14%  Similarity=0.202  Sum_probs=98.8

Q ss_pred             CCEEEEEEcC--CCC-EEEEEe-C--CCeEEEEECCCC--e--EEEEEecC-CCCEEEEEEcCCCCEEEEEEC-------
Q psy14440        461 GPVRKLSFSP--DRS-LLLSCS-Q--DNTIRLWSLLLW--R--CLVVYKGH-GHPVWDIKFSPHGYYFASAGH-------  522 (711)
Q Consensus       461 ~~V~~l~fsp--dg~-~L~s~s-~--Dg~V~iwdl~t~--~--~~~~~~~h-~~~V~~v~~sp~g~~l~sgs~-------  522 (711)
                      .....+.+..  ++. +|+++. .  +.+|.+|++...  .  .+..+.+. -...+++.+.++|.+.++...       
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence            4566777655  344 454443 2  467888877542  2  23334332 345789999999987776541       


Q ss_pred             ----------CCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCC-CcE--EEEeeCCCCC
Q psy14440        523 ----------DRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVT-GSH--VRLLTGHKAP  588 (711)
Q Consensus       523 ----------Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~-~~~--v~~~~~h~~~  588 (711)
                                .|.+..++.  ++ ++.+......-+.++|+|++++|+.+. ..+.|..||+.. ++.  .+.+. ..+.
T Consensus       192 ~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~  267 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTL  267 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSE
T ss_pred             ccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCC
Confidence                      234444444  33 333444445678999999998877765 478899999863 332  23442 3466


Q ss_pred             eEEEEEec-CCCEEEEEeCC-CcEEEEECC--CCeEEEEee
Q psy14440        589 VYALSFSV-CGRFLASAGGD-GNVHMWDLS--NGHLLTLLT  625 (711)
Q Consensus       589 I~~la~sp-dg~~Lasgs~D-g~I~iwDl~--sg~~i~~l~  625 (711)
                      ...+++.. +|++.+++..+ +.|..||-.  .+..+..++
T Consensus       268 PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          268 VDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             EEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             CceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            78899999 59987767644 355555543  255555554

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.34  E-value=0.009  Score=61.43  Aligned_cols=181  Identities=10%  Similarity=0.092  Sum_probs=96.3

Q ss_pred             CCCEEEEEeCC----CeEEEEECCCCeEEEE--EecCCCCEEEEEEcCCCCEEEEEECC------CeEEEEECCCCceeE
Q psy14440        471 DRSLLLSCSQD----NTIRLWSLLLWRCLVV--YKGHGHPVWDIKFSPHGYYFASAGHD------RMARLWATDSYHPLR  538 (711)
Q Consensus       471 dg~~L~s~s~D----g~V~iwdl~t~~~~~~--~~~h~~~V~~v~~sp~g~~l~sgs~D------g~i~lwd~~~~~~~~  538 (711)
                      ++..++.|+.+    ..+.+||..+.+-...  +.........+.+  +++.++.|+.+      ..+.+||..+.+=..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            56666777654    5688999876543222  2211111222222  56677777765      458889988754222


Q ss_pred             E--eecCCCCeeEEEEcCCCCEEEEEEc---------CCcEEEEECCCCcEEEEee--CCCCCeEEEEEecCCCEEEEEe
Q psy14440        539 L--FVGHYSDVDCVQFHPNSNYVATGSS---------DRTIRLWDCVTGSHVRLLT--GHKAPVYALSFSVCGRFLASAG  605 (711)
Q Consensus       539 ~--~~~h~~~V~~v~~sp~~~~latgs~---------Dg~I~iwD~~~~~~v~~~~--~h~~~I~~la~spdg~~Lasgs  605 (711)
                      .  +....... +++.. +++.++.|+.         -..+.+||..+.+-...-.  .....-..+.  -++++++.|+
T Consensus       133 ~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG  208 (306)
T 3ii7_A          133 KPSMLTQRCSH-GMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF--VKDKIFAVGG  208 (306)
T ss_dssp             ECCCSSCCBSC-EEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred             CCCCcCCccee-EEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE--ECCEEEEEeC
Confidence            1  11111111 22222 5666666653         3458899998775332211  1111122222  2677777776


Q ss_pred             CC-----CcEEEEECCCCeEEEE--eeCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEeCCC
Q psy14440        606 GD-----GNVHMWDLSNGHLLTL--LTGHTDVVRALCFSRDGNILASSGQD-----CSVKLWDFAK  659 (711)
Q Consensus       606 ~D-----g~I~iwDl~sg~~i~~--l~~h~~~V~sl~fspdg~~Lasgs~D-----g~V~iWdl~~  659 (711)
                      .+     ..|.+||+.+.+-...  +.........+.+  ++.+++.||.+     ..|.+||+.+
T Consensus       209 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             EETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred             CCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence            53     3689999988754322  2111122222222  67788888855     4578888765

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.33  E-value=0.088  Score=55.65  Aligned_cols=195  Identities=12%  Similarity=0.051  Sum_probs=107.5

Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEEe---cCCCCEEEEEEcCC---CCEEEEEEC----C----C
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR-CLVVYK---GHGHPVWDIKFSPH---GYYFASAGH----D----R  524 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~-~~~~~~---~h~~~V~~v~~sp~---g~~l~sgs~----D----g  524 (711)
                      -....+++|.++|+ |+++..+|.|++++ .+++ .+..+.   ........|+++|+   +..|.++..    +    +
T Consensus        28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            34568999999997 55556679999997 3454 222111   12346889999997   444444332    3    5


Q ss_pred             eEEEEECCCC--c---eeEE---ee-cCCCCeeEEEEcCCCCEEEEEEc-------------CCcEEEEECCCC------
Q psy14440        525 MARLWATDSY--H---PLRL---FV-GHYSDVDCVQFHPNSNYVATGSS-------------DRTIRLWDCVTG------  576 (711)
Q Consensus       525 ~i~lwd~~~~--~---~~~~---~~-~h~~~V~~v~~sp~~~~latgs~-------------Dg~I~iwD~~~~------  576 (711)
                      .|..|+....  .   ....   +. +.......++|.|+|.++++.+.             .|.|.-+|....      
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6777776643  1   1111   21 11112467999999987666432             145555554321      


Q ss_pred             --cEEEEeeCCCCCeEEEEEec-CCCEEEEEeCCC---cEEEEECCCCe------------------EEEEeeCCCCCEE
Q psy14440        577 --SHVRLLTGHKAPVYALSFSV-CGRFLASAGGDG---NVHMWDLSNGH------------------LLTLLTGHTDVVR  632 (711)
Q Consensus       577 --~~v~~~~~h~~~I~~la~sp-dg~~Lasgs~Dg---~I~iwDl~sg~------------------~i~~l~~h~~~V~  632 (711)
                        .....-.++.. ...++|++ +|+++++-...+   .|.+..  .|.                  .+..+........
T Consensus       186 f~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~  262 (354)
T 3a9g_A          186 FPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS  262 (354)
T ss_dssp             STTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred             CCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence              01111234443 45799999 666555433222   233332  221                  2222211224577


Q ss_pred             EEEEe-------CCCCEEEEEeCCCcEEEEeCCC
Q psy14440        633 ALCFS-------RDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       633 sl~fs-------pdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      .++|.       .+|+++++.-..+.|...++..
T Consensus       263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            88884       4677777666667787777753

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.23  E-value=0.036  Score=58.65  Aligned_cols=190  Identities=13%  Similarity=0.155  Sum_probs=113.8

Q ss_pred             EEEEEEcCCCCEEEEEe------------CCCeEEEEECCC--CeEE-EEEec-----CCCCEEEEEEcC--CCC-EEEE
Q psy14440        463 VRKLSFSPDRSLLLSCS------------QDNTIRLWSLLL--WRCL-VVYKG-----HGHPVWDIKFSP--HGY-YFAS  519 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s------------~Dg~V~iwdl~t--~~~~-~~~~~-----h~~~V~~v~~sp--~g~-~l~s  519 (711)
                      .-.+...++|..+++++            .+|.|.++|..+  .+.. ..+.+     .......+.+..  ++. +|++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            34566677775555542            689999999873  2221 12332     123566777655  353 4444


Q ss_pred             EE-C--CCeEEEEECCCCc-e---eEEeec-CCCCeeEEEEcCCCCEEEEEEc-----------------CCcEEEEECC
Q psy14440        520 AG-H--DRMARLWATDSYH-P---LRLFVG-HYSDVDCVQFHPNSNYVATGSS-----------------DRTIRLWDCV  574 (711)
Q Consensus       520 gs-~--Dg~i~lwd~~~~~-~---~~~~~~-h~~~V~~v~~sp~~~~latgs~-----------------Dg~I~iwD~~  574 (711)
                      +. .  +.++.+|+++... .   +..+.+ .....+.+.+.++|.++++...                 .|.|..+|. 
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-  210 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-  210 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence            43 3  4678888776532 2   223332 2345788999999988777541                 234555554 


Q ss_pred             CCcEEEEeeCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CeE--EEEeeCCCCCEEEEEEeC-CCCEEEEEeCC
Q psy14440        575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAG-GDGNVHMWDLSN-GHL--LTLLTGHTDVVRALCFSR-DGNILASSGQD  649 (711)
Q Consensus       575 ~~~~v~~~~~h~~~I~~la~spdg~~Lasgs-~Dg~I~iwDl~s-g~~--i~~l~~h~~~V~sl~fsp-dg~~Lasgs~D  649 (711)
                       ++. +.+...-..-+.++|||||++|+.+. ..++|..||+.. |+.  ...+ ...+....+++.. +|++.+++..+
T Consensus       211 -~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          211 -NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             -TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             -CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence             433 33332334578999999999887765 567999999863 433  2233 2346678899999 59988877644


Q ss_pred             -CcEEEEe
Q psy14440        650 -CSVKLWD  656 (711)
Q Consensus       650 -g~V~iWd  656 (711)
                       +.|..||
T Consensus       288 g~~v~~~~  295 (355)
T 3sre_A          288 GMRIFFYD  295 (355)
T ss_dssp             HHHHHSCC
T ss_pred             ceEEEEEC
Confidence             3444443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.20  E-value=0.23  Score=57.98  Aligned_cols=231  Identities=9%  Similarity=0.038  Sum_probs=136.6

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEE
Q psy14440        387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKL  466 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l  466 (711)
                      ...|+|+.-..+|. |..|+.+| +..||-.  +......                     ..       ......|.++
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~--~~~~~~~---------------------~~-------~~~~~~i~~i   68 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGY--STQQHFT---------------------YG-------ENNNTRIYCG   68 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSS--CEEECSC---------------------TT-------STTSSCEEEE
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCC--ceEEEEc---------------------cC-------CCCCceEEEE
Confidence            56799999988885 45667777 4455531  1111000                     00       0123458888


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEee----c
Q psy14440        467 SFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFV----G  542 (711)
Q Consensus       467 ~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~----~  542 (711)
                      ....+| .|..|+.+| +..||..+.+...........|.++... +| .+..++.+ -+..++..+++......    .
T Consensus        69 ~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l  143 (758)
T 3ott_A           69 VIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGL  143 (758)
T ss_dssp             EEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEEEECHHHHCC
T ss_pred             EEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCc
Confidence            777665 566777666 8899988764332111123357776543 44 56667666 57888887655332201    1


Q ss_pred             CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC-----CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy14440        543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG-----HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       543 h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~-----h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s  617 (711)
                      ....|.++....++++.+ |+.+ -|..||..+++.......     ....|.++....++..|..|+. +.|..+|..+
T Consensus       144 ~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~  220 (758)
T 3ott_A          144 PNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST  220 (758)
T ss_dssp             SCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT
T ss_pred             CCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC
Confidence            234588888877766544 5544 477888777654322111     1234888888887776666664 4688899887


Q ss_pred             CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        618 GHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       618 g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ++...........|.++....+|.+.+ |+. +-|.+++..+
T Consensus       221 ~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~  260 (758)
T 3ott_A          221 GQIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDT  260 (758)
T ss_dssp             TEEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTT
T ss_pred             CeEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCC
Confidence            764322111234588888887887665 444 4577787654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.20  E-value=0.35  Score=51.97  Aligned_cols=248  Identities=12%  Similarity=0.165  Sum_probs=156.3

Q ss_pred             cEEEEEecCCCeeE-EEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEE
Q psy14440        440 ILVRIMDERNAETT-RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFA  518 (711)
Q Consensus       440 ~~i~i~d~~~~~~~-~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~  518 (711)
                      ..+.+.|..++... +.-..-.    +.-.+|..+.|+.=. ..++.|||+++...+..+.- ...|.-=.|-... .++
T Consensus        48 ~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~  120 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVA  120 (494)
T ss_dssp             CEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEE
T ss_pred             CeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEE
Confidence            36677777665443 2222212    334567776666554 67899999999999988875 3455556665443 555


Q ss_pred             EEECCCeEEEEECCC-CceeEEeecC----CCCeeEEEEcCCCCEEEEEE-------cCCcEEEEECCCCcEEEEeeCCC
Q psy14440        519 SAGHDRMARLWATDS-YHPLRLFVGH----YSDVDCVQFHPNSNYVATGS-------SDRTIRLWDCVTGSHVRLLTGHK  586 (711)
Q Consensus       519 sgs~Dg~i~lwd~~~-~~~~~~~~~h----~~~V~~v~~sp~~~~latgs-------~Dg~I~iwD~~~~~~v~~~~~h~  586 (711)
                      ..+ +..|+-|+++. ..+.+.|..|    ...|.....+++.++++..+       -.|.+.+|.+..+. -+.+.||.
T Consensus       121 lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGha  198 (494)
T 1bpo_A          121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA  198 (494)
T ss_dssp             EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSE
T ss_pred             EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeee
Confidence            554 56899999974 4677777765    34577778888899877543       24678899987654 56778887


Q ss_pred             CCeEEEEEecCC---CEEEEEeC---CCcEEEEECCCC--------eEEEEe-e---CCCCCEEEEEEeCCCCEEEEEeC
Q psy14440        587 APVYALSFSVCG---RFLASAGG---DGNVHMWDLSNG--------HLLTLL-T---GHTDVVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       587 ~~I~~la~spdg---~~Lasgs~---Dg~I~iwDl~sg--------~~i~~l-~---~h~~~V~sl~fspdg~~Lasgs~  648 (711)
                      +....+.+..+.   ..++.+..   .++++|.++...        +....+ -   ...+--.++..|+.-.++..-+.
T Consensus       199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK  278 (494)
T 1bpo_A          199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK  278 (494)
T ss_dssp             EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred             eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence            665555443221   23443433   278999998542        111121 1   12345568888988888999999


Q ss_pred             CCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        649 DCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       649 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      -|.|++||+.+.......           +.+.....+.+.....+.|.+|-  ++|++|.
T Consensus       279 ~G~i~lyDleTgt~i~~n-----------rIs~~~iF~t~~~~~~~Gi~~Vn--r~GqVl~  326 (494)
T 1bpo_A          279 YGYIHLYDLETGTCIYMN-----------RISGETIFVTAPHEATAGIIGVN--RKGQVLS  326 (494)
T ss_dssp             TSEEEEEETTTCCEEEEE-----------ECCSSCEEEEEEETTTTEEEEEE--TTCEEEE
T ss_pred             CceEEEEecccceeeeee-----------cccCCceEEecccCCCCcEEEEc--cCceEEE
Confidence            999999999987654321           11233444555555556665554  6666553

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.08  E-value=0.5  Score=51.66  Aligned_cols=122  Identities=11%  Similarity=0.079  Sum_probs=66.1

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      .....+...-..-++++|.+||+++++-...+.|++++..+.....+.                    +.....   ...
T Consensus        17 f~~~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~--------------------~~~~~~---~~~   73 (454)
T 1cru_A           17 FDKKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVF--------------------QVPEIV---NDA   73 (454)
T ss_dssp             SCEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE--------------------ECTTCC---CCT
T ss_pred             eEEEEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEe--------------------cCCccc---ccc
Confidence            334444444567889999999998877654456777765332221110                    000000   000


Q ss_pred             cccCCEEEEEEcCC---CCEEEEEeC-------------CCeEEEEECCCC-------eEEE-EEe-cCCCCEEEEEEcC
Q psy14440        458 GHEGPVRKLSFSPD---RSLLLSCSQ-------------DNTIRLWSLLLW-------RCLV-VYK-GHGHPVWDIKFSP  512 (711)
Q Consensus       458 ~h~~~V~~l~fspd---g~~L~s~s~-------------Dg~V~iwdl~t~-------~~~~-~~~-~h~~~V~~v~~sp  512 (711)
                      ...+....|+|+|+   +..|+.+..             ...|.-|++...       +.+. .+. ...+....|+|.+
T Consensus        74 ~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p  153 (454)
T 1cru_A           74 DGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP  153 (454)
T ss_dssp             TSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             CCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC
Confidence            12456788999985   555554432             134555554321       1111 122 1234578999999


Q ss_pred             CCCEEEEEEC
Q psy14440        513 HGYYFASAGH  522 (711)
Q Consensus       513 ~g~~l~sgs~  522 (711)
                      +|+++++.+.
T Consensus       154 DG~Lyv~~Gd  163 (454)
T 1cru_A          154 DQKIYYTIGD  163 (454)
T ss_dssp             TSCEEEEECC
T ss_pred             CCeEEEEECC
Confidence            9987776553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.07  E-value=0.027  Score=57.53  Aligned_cols=144  Identities=15%  Similarity=0.145  Sum_probs=77.8

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCe--EEEEEecCCCCEEEEEEcCCCCEEEEEECC-----CeEEEEECCCCceeE
Q psy14440        471 DRSLLLSCSQD-----NTIRLWSLLLWR--CLVVYKGHGHPVWDIKFSPHGYYFASAGHD-----RMARLWATDSYHPLR  538 (711)
Q Consensus       471 dg~~L~s~s~D-----g~V~iwdl~t~~--~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D-----g~i~lwd~~~~~~~~  538 (711)
                      ++..++.|+.+     ..+.+||+.+.+  .+............+.+  +++.++.|+.+     ..+.+||..+.+=..
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            56667777643     358899987644  33322211111222222  56677777754     458888987653222


Q ss_pred             E--eecCCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCCCcEEEEeeC--CCCCeEEEEEecCCCEEEEEeCC--
Q psy14440        539 L--FVGHYSDVDCVQFHPNSNYVATGSSD-----RTIRLWDCVTGSHVRLLTG--HKAPVYALSFSVCGRFLASAGGD--  607 (711)
Q Consensus       539 ~--~~~h~~~V~~v~~sp~~~~latgs~D-----g~I~iwD~~~~~~v~~~~~--h~~~I~~la~spdg~~Lasgs~D--  607 (711)
                      .  +........++.+  ++..++.|+.+     ..|.+||..+.+-...-..  ......++.  -++++++.|+.+  
T Consensus       190 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~  265 (301)
T 2vpj_A          190 VTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGN  265 (301)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSS
T ss_pred             CCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCC
Confidence            1  1111111222322  56677777654     4689999987754332211  111222222  367777777765  


Q ss_pred             ---CcEEEEECCCCeE
Q psy14440        608 ---GNVHMWDLSNGHL  620 (711)
Q Consensus       608 ---g~I~iwDl~sg~~  620 (711)
                         ..|.+||+.+.+-
T Consensus       266 ~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          266 SLLSSIECYDPIIDSW  281 (301)
T ss_dssp             SBEEEEEEEETTTTEE
T ss_pred             cccccEEEEcCCCCeE
Confidence               3578889877653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.92  E-value=0.049  Score=56.13  Aligned_cols=183  Identities=9%  Similarity=0.040  Sum_probs=93.1

Q ss_pred             cCCCCEEEEEeC----C-------CeEEEEECCCCeEEEE--EecCCCCEEEEEEcCCCCEEEEEECC--------CeEE
Q psy14440        469 SPDRSLLLSCSQ----D-------NTIRLWSLLLWRCLVV--YKGHGHPVWDIKFSPHGYYFASAGHD--------RMAR  527 (711)
Q Consensus       469 spdg~~L~s~s~----D-------g~V~iwdl~t~~~~~~--~~~h~~~V~~v~~sp~g~~l~sgs~D--------g~i~  527 (711)
                      ..++..++.|+.    +       ..+.+||..+.+-...  +.........+.+  +++.++.|+.+        ..+.
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~  120 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVM  120 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEE
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEE
Confidence            346777777773    1       1277888876543221  1100111111222  56677777632        4588


Q ss_pred             EEECCCCce--eEEeecCCCCeeEEEEcCCCCEEEEEEc-C-----CcEEEEECCCCcEEEEe--eCCCCCeEEEEEecC
Q psy14440        528 LWATDSYHP--LRLFVGHYSDVDCVQFHPNSNYVATGSS-D-----RTIRLWDCVTGSHVRLL--TGHKAPVYALSFSVC  597 (711)
Q Consensus       528 lwd~~~~~~--~~~~~~h~~~V~~v~~sp~~~~latgs~-D-----g~I~iwD~~~~~~v~~~--~~h~~~I~~la~spd  597 (711)
                      +||..+.+=  +..+...... .+++. -+++.++.|+. +     ..+.+||..+.+-...-  ........++.  -+
T Consensus       121 ~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~  196 (315)
T 4asc_A          121 CYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HD  196 (315)
T ss_dssp             EEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ET
T ss_pred             EECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--EC
Confidence            888876531  1111111111 22222 35666677765 2     46899998876432221  11111122222  36


Q ss_pred             CCEEEEEeCCC-----cEEEEECCCCeEEEEee--CCCCCEEEEEEeCCCCEEEEEeCCC--------------cEEEEe
Q psy14440        598 GRFLASAGGDG-----NVHMWDLSNGHLLTLLT--GHTDVVRALCFSRDGNILASSGQDC--------------SVKLWD  656 (711)
Q Consensus       598 g~~Lasgs~Dg-----~I~iwDl~sg~~i~~l~--~h~~~V~sl~fspdg~~Lasgs~Dg--------------~V~iWd  656 (711)
                      +++++.|+.++     .+.+||+.+.+-...-.  ........+.  -++++++.||.++              .|.+||
T Consensus       197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd  274 (315)
T 4asc_A          197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYN  274 (315)
T ss_dssp             TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEec
Confidence            77888887654     58899998875433221  1111112222  2677888887642              366777


Q ss_pred             CCC
Q psy14440        657 FAK  659 (711)
Q Consensus       657 l~~  659 (711)
                      +.+
T Consensus       275 ~~~  277 (315)
T 4asc_A          275 EEE  277 (315)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.88  E-value=0.09  Score=56.39  Aligned_cols=139  Identities=15%  Similarity=0.153  Sum_probs=94.5

Q ss_pred             CCCEEEEEECCCeEEEEECCCCceeEEeecC----CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-----------
Q psy14440        513 HGYYFASAGHDRMARLWATDSYHPLRLFVGH----YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS-----------  577 (711)
Q Consensus       513 ~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h----~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~-----------  577 (711)
                      +|..++++- ++.||+.++......+.+...    ...|..+..+|+|++||..+ +.+|.|..+-.+.           
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence            444444443 467787777644444554432    34688999999999999986 6689998876321           


Q ss_pred             -EEEEeeC------CCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCC--eEEEEee---------CCCCCEEEEEE
Q psy14440        578 -HVRLLTG------HKAPVYALSFSVC---GRFLASAGGDGNVHMWDLSNG--HLLTLLT---------GHTDVVRALCF  636 (711)
Q Consensus       578 -~v~~~~~------h~~~I~~la~spd---g~~Lasgs~Dg~I~iwDl~sg--~~i~~l~---------~h~~~V~sl~f  636 (711)
                       ..+.+.-      ...+|..+.|+|-   |..|++-..|+.|++||+...  +.. .++         .....|.+++|
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence             1233332      2577999999995   568999999999999999752  122 222         22256889999


Q ss_pred             eCCCCEEEEEe--CCCcEEE
Q psy14440        637 SRDGNILASSG--QDCSVKL  654 (711)
Q Consensus       637 spdg~~Lasgs--~Dg~V~i  654 (711)
                      ..+|-.|...+  ..|.|+-
T Consensus       188 g~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          188 SKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             CTTSSCEEEEECTTSCEEEE
T ss_pred             cCCCcEEEEEecCCCCCEEE
Confidence            99887666655  6777654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.76  E-value=0.024  Score=58.41  Aligned_cols=181  Identities=12%  Similarity=0.118  Sum_probs=93.2

Q ss_pred             CCCEEEEEeC----C-----CeEEEEECCCCeEEEE--EecCCCCEEEEEEcCCCCEEEEEECC-----CeEEEEECCCC
Q psy14440        471 DRSLLLSCSQ----D-----NTIRLWSLLLWRCLVV--YKGHGHPVWDIKFSPHGYYFASAGHD-----RMARLWATDSY  534 (711)
Q Consensus       471 dg~~L~s~s~----D-----g~V~iwdl~t~~~~~~--~~~h~~~V~~v~~sp~g~~l~sgs~D-----g~i~lwd~~~~  534 (711)
                      ++..++.|+.    +     ..+.+||..+.+-...  +.........+.+  +++.++.|+.+     ..+.+||..+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            4555666554    2     4588888876542221  1111111222222  56677777643     35788888765


Q ss_pred             ceeEE--eecCCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCCCcEEEE--eeCCCCCeEEEEEecCCCEEEEEe
Q psy14440        535 HPLRL--FVGHYSDVDCVQFHPNSNYVATGSSD-----RTIRLWDCVTGSHVRL--LTGHKAPVYALSFSVCGRFLASAG  605 (711)
Q Consensus       535 ~~~~~--~~~h~~~V~~v~~sp~~~~latgs~D-----g~I~iwD~~~~~~v~~--~~~h~~~I~~la~spdg~~Lasgs  605 (711)
                      +=...  +........++.+  ++..++.|+.+     ..+.+||..+.+-...  +........++.+  ++++++.|+
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  223 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGG  223 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeC
Confidence            32111  1111111222332  56667777654     4588999877643221  1111122222332  677777777


Q ss_pred             CC-----CcEEEEECCCCeEEEE--eeCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEeCCC
Q psy14440        606 GD-----GNVHMWDLSNGHLLTL--LTGHTDVVRALCFSRDGNILASSGQD-----CSVKLWDFAK  659 (711)
Q Consensus       606 ~D-----g~I~iwDl~sg~~i~~--l~~h~~~V~sl~fspdg~~Lasgs~D-----g~V~iWdl~~  659 (711)
                      .+     ..+.+||+.+.+-...  +....... +++. -++++++.||.+     ..|.+||+.+
T Consensus       224 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          224 YDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCCCCccceEEEEeCCCCcEEECCCCCCCccce-EEEE-ECCEEEEEcCcCCCcccceEEEEcCCC
Confidence            64     4699999988764332  11111111 2222 267788888754     3467777754

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.75  E-value=0.07  Score=57.23  Aligned_cols=141  Identities=17%  Similarity=0.193  Sum_probs=95.9

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeEEEEEecC----CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc----------
Q psy14440        470 PDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH----GHPVWDIKFSPHGYYFASAGHDRMARLWATDSYH----------  535 (711)
Q Consensus       470 pdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h----~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~----------  535 (711)
                      .+|..++.+- ++.||.-++.....-+.++..    -..|..+..+|+|.++|..+ +.+|.|..+-.+.          
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence            4555565553 467888887644444444432    22578899999999999886 4678888775221          


Q ss_pred             --eeEEeec------CCCCeeEEEEcC---CCCEEEEEEcCCcEEEEECCCCc--EEEEee---------CCCCCeEEEE
Q psy14440        536 --PLRLFVG------HYSDVDCVQFHP---NSNYVATGSSDRTIRLWDCVTGS--HVRLLT---------GHKAPVYALS  593 (711)
Q Consensus       536 --~~~~~~~------h~~~V~~v~~sp---~~~~latgs~Dg~I~iwD~~~~~--~v~~~~---------~h~~~I~~la  593 (711)
                        ..+.+.-      ....|..+.|||   ++..|++-..|++||+||+....  .. .+.         .....|.+++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence              1122221      256799999999   46789999999999999998632  11 221         2336789999


Q ss_pred             EecCCCEEEEEe--CCCcEEEE
Q psy14440        594 FSVCGRFLASAG--GDGNVHMW  613 (711)
Q Consensus       594 ~spdg~~Lasgs--~Dg~I~iw  613 (711)
                      |..+|-.|...+  ..|.|+-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            999887777655  77877644

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.72  E-value=1.7  Score=53.08  Aligned_cols=172  Identities=12%  Similarity=0.096  Sum_probs=108.9

Q ss_pred             eEEEEECCCCeEEEEEecC-CCCEEEEEE---cCC-CCEEEEEE----------CCCeEEEEECCCCceeEEee--cCCC
Q psy14440        483 TIRLWSLLLWRCLVVYKGH-GHPVWDIKF---SPH-GYYFASAG----------HDRMARLWATDSYHPLRLFV--GHYS  545 (711)
Q Consensus       483 ~V~iwdl~t~~~~~~~~~h-~~~V~~v~~---sp~-g~~l~sgs----------~Dg~i~lwd~~~~~~~~~~~--~h~~  545 (711)
                      .|++.|-.+++.+..+.-. +..+.+++.   ..+ ..+|++|+          ..|.|.+|++..++ ++.+.  ...+
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~lv~~~~v~g  886 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EEEEEEEEESS
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EEEEEEEEcCC
Confidence            4778888888877766532 344555553   322 46888887          35789999987443 33221  2456


Q ss_pred             CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEE--ECCCCeEEEE
Q psy14440        546 DVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW--DLSNGHLLTL  623 (711)
Q Consensus       546 ~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iw--Dl~sg~~i~~  623 (711)
                      .|++++-- +| +|++|- .++|++||+...+.++.-..+-..|..+.....|+++++|+.-..|.++  +...++....
T Consensus       887 ~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~  963 (1158)
T 3ei3_A          887 AVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI  963 (1158)
T ss_dssp             CEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred             cCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence            78887643 45 555554 5789999998766554211111123333333457899999887777765  4445554433


Q ss_pred             ee-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        624 LT-GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       624 l~-~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      -+ .+...++++.|-.++ .++.+..+|.|.+.....
T Consensus       964 a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          964 ARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             EeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence            33 244678888887554 677789999999998765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.69  E-value=0.12  Score=52.81  Aligned_cols=173  Identities=8%  Similarity=0.053  Sum_probs=87.9

Q ss_pred             cEEEEEecCCCeeEEEee--cccCCEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeEEEE--EecCCCCEEEEE
Q psy14440        440 ILVRIMDERNAETTRTLV--GHEGPVRKLSFSPDRSLLLSCSQD------NTIRLWSLLLWRCLVV--YKGHGHPVWDIK  509 (711)
Q Consensus       440 ~~i~i~d~~~~~~~~~l~--~h~~~V~~l~fspdg~~L~s~s~D------g~V~iwdl~t~~~~~~--~~~h~~~V~~v~  509 (711)
                      ..+.++|..+.+-...-.  ........+.+  +++.++.|+.+      ..+.+||..+.+-...  +.........+.
T Consensus        70 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  147 (306)
T 3ii7_A           70 KRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE  147 (306)
T ss_dssp             CEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             ceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE
Confidence            456677766654332211  11111122222  66677777765      4588999876543222  111111112222


Q ss_pred             EcCCCCEEEEEEC---------CCeEEEEECCCCceeEE--eecCCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEEC
Q psy14440        510 FSPHGYYFASAGH---------DRMARLWATDSYHPLRL--FVGHYSDVDCVQFHPNSNYVATGSSD-----RTIRLWDC  573 (711)
Q Consensus       510 ~sp~g~~l~sgs~---------Dg~i~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~latgs~D-----g~I~iwD~  573 (711)
                      +  +++.++.|+.         -..+.+||..+.+=...  +...... .+++.. +++.++.|+.+     ..+.+||.
T Consensus       148 ~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~  223 (306)
T 3ii7_A          148 A--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDI  223 (306)
T ss_dssp             E--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEET
T ss_pred             E--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeC
Confidence            2  5666676653         34588899887532211  1111111 222222 56666666543     46889998


Q ss_pred             CCCcEEEE--eeCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeE
Q psy14440        574 VTGSHVRL--LTGHKAPVYALSFSVCGRFLASAGGD-----GNVHMWDLSNGHL  620 (711)
Q Consensus       574 ~~~~~v~~--~~~h~~~I~~la~spdg~~Lasgs~D-----g~I~iwDl~sg~~  620 (711)
                      .+.+-...  +........++.+  ++++++.|+.+     ..|.+||+.+.+-
T Consensus       224 ~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  275 (306)
T 3ii7_A          224 KLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW  275 (306)
T ss_dssp             TTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred             CCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence            87643222  1111222233333  67788888754     4688899887653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.64  E-value=1.2  Score=51.94  Aligned_cols=225  Identities=11%  Similarity=0.130  Sum_probs=130.8

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEE
Q psy14440        388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLS  467 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~  467 (711)
                      ..|.++....+| .|.+|+.+| +..||..+.+...                               ........|.++.
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~-------------------------------~~~~~~~~i~~i~  109 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ-------------------------------PETDFPTDVRTMA  109 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC-------------------------------CSCCCCSCEEEEE
T ss_pred             ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC-------------------------------cccCCCceEEEEE
Confidence            457777766665 455666655 6777765433211                               0000112466655


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-----cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeec
Q psy14440        468 FSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK-----GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG  542 (711)
Q Consensus       468 fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~-----~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~  542 (711)
                      . .+| .|..++.+ -|..||..+.+.. .+.     .....|.++....+|.+.+ |+.+ -+..++..+++.......
T Consensus       110 ~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~  183 (758)
T 3ott_A          110 L-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLP  183 (758)
T ss_dssp             E-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCC
T ss_pred             e-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCC
Confidence            4 244 56666666 5888998765543 331     1235688888887776544 5544 477788776543221111


Q ss_pred             -----CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy14440        543 -----HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       543 -----h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s  617 (711)
                           ....|.++....++..|..|+. +-+..+|..+++...........|.++....+|.+.+ |+. +-|.++|..+
T Consensus       184 ~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~  260 (758)
T 3ott_A          184 VHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDT  260 (758)
T ss_dssp             CCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTT
T ss_pred             CccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCC
Confidence                 1224788888777776666664 4588899877654322111234588888887887654 444 4588899877


Q ss_pred             CeEEEEeeC-------CCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        618 GHLLTLLTG-------HTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       618 g~~i~~l~~-------h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      ++.......       ....|.++....+|++.+ |+..| +.++.
T Consensus       261 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~  304 (758)
T 3ott_A          261 TPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSR  304 (758)
T ss_dssp             SCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEEC
T ss_pred             CcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccc
Confidence            654322111       124689998888887554 44555 54443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.041  Score=57.78  Aligned_cols=178  Identities=11%  Similarity=-0.006  Sum_probs=96.1

Q ss_pred             eCCCeEEEEECCCCeEEEEEec----CCCCEEE---EEE-----cCCCCEEEEEECCCeEEEEECCCCceeEEeecCCC-
Q psy14440        479 SQDNTIRLWSLLLWRCLVVYKG----HGHPVWD---IKF-----SPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-  545 (711)
Q Consensus       479 s~Dg~V~iwdl~t~~~~~~~~~----h~~~V~~---v~~-----sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~-  545 (711)
                      +.||.|..++..++.....+..    ...++..   ...     +..+..+++|+.+|.+...|..+|+.+..+..... 
T Consensus        64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~  143 (339)
T 2be1_A           64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKN  143 (339)
T ss_dssp             STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBC
T ss_pred             CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCc
Confidence            6899999999888755544432    2222221   000     01345888999999999999999999988863211 


Q ss_pred             ------CeeEEEEc-----CCCCEEEEEEcCCcEEEEECCCCcEEEEe-----eCCCCC--e-EEEEEecCCCEEEEEeC
Q psy14440        546 ------DVDCVQFH-----PNSNYVATGSSDRTIRLWDCVTGSHVRLL-----TGHKAP--V-YALSFSVCGRFLASAGG  606 (711)
Q Consensus       546 ------~V~~v~~s-----p~~~~latgs~Dg~I~iwD~~~~~~v~~~-----~~h~~~--I-~~la~spdg~~Lasgs~  606 (711)
                            ...|....     -.+..|+.|..+..+.+.+ ++|+ +..+     ..+...  + .+-..+.|+.+ +.++.
T Consensus       144 ~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~  220 (339)
T 2be1_A          144 GYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFR  220 (339)
T ss_dssp             C--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEET
T ss_pred             ccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECC
Confidence                  11122211     1245788888787777777 4553 2111     111000  0 00001124555 44677


Q ss_pred             CCcEEEEECCCCeEEE-EeeCCCCCEE---E-----------EEEeC----------CCCEEEEEeCCCcEEEEeCCCC
Q psy14440        607 DGNVHMWDLSNGHLLT-LLTGHTDVVR---A-----------LCFSR----------DGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       607 Dg~I~iwDl~sg~~i~-~l~~h~~~V~---s-----------l~fsp----------dg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      ||.|.-+|..+|+.+. ... -.++|.   .           +.-.|          +++.++..+.+|.+.-+..++.
T Consensus       221 dg~v~A~d~~~G~~~W~~~~-l~sPv~~~~dv~~~~~~g~~v~~~~P~~~~~~~~~~~~~v~v~~t~~G~~~Als~~~y  298 (339)
T 2be1_A          221 DKSLLASDLDFRIARWVSPT-FPGIIVGLFDVFNDLRTNENILVPHPFNPGDHESISSNKVYLDQTSNLSWFALSSQNF  298 (339)
T ss_dssp             TTEEEEECSTTCCEEEECCC-CSSCEEEEEEEEEETTTTEEEEEECCCCC--------CCEEEEECTTCCEEEEETTTC
T ss_pred             CCEEEEEECCCCcEEEEeec-CCCCeEEEEEEEEecCCCCEEEecCCCcccccccccCCeEEEEECCCCcEEEecCCCC
Confidence            8888888888887664 221 112221   1           11122          3455554677888888887654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.61  E-value=0.068  Score=55.20  Aligned_cols=173  Identities=11%  Similarity=0.080  Sum_probs=100.5

Q ss_pred             EEcCCCCEEEEEeCC--------------CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE----CCCeEEE
Q psy14440        467 SFSPDRSLLLSCSQD--------------NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG----HDRMARL  528 (711)
Q Consensus       467 ~fspdg~~L~s~s~D--------------g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs----~Dg~i~l  528 (711)
                      -++++|.+|+-+...              ..|+..++...+.......   .  +..|++++.+|+...    ....|+.
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~---~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD---P--CIYASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS---C--EEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC---C--ccEEEEeCCEEEEEeecCCCCceEEE
Confidence            446677777666542              4677778776653333221   2  235677888888765    3445666


Q ss_pred             EECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCC
Q psy14440        529 WATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS-DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD  607 (711)
Q Consensus       529 wd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~-Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~D  607 (711)
                      .+++.... ..+..+..    ..|+++++.|+..+. ...|.+.++..+...+.+.+   ... ..++|+|++|+-...+
T Consensus       134 ~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~  204 (302)
T 3s25_A          134 IRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVN  204 (302)
T ss_dssp             EETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGG
T ss_pred             EECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcC
Confidence            67765443 33433332    345677888776664 67899999877765555442   222 3466899988876544


Q ss_pred             --CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC--CCcEEEEeCC
Q psy14440        608 --GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ--DCSVKLWDFA  658 (711)
Q Consensus       608 --g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~--Dg~V~iWdl~  658 (711)
                        ..|..-++..+. ...+..  ..+  ..|++++.+|+-++.  .+.|..-++.
T Consensus       205 ~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          205 RDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKND  254 (302)
T ss_dssp             GTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred             CCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence              357677765544 333331  233  336777887776533  2345444544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.59  E-value=0.13  Score=53.07  Aligned_cols=183  Identities=11%  Similarity=0.071  Sum_probs=90.6

Q ss_pred             cCCCCEEEEEeC----CC-------eEEEEECCCCeEEEE--EecCCCCEEEEEEcCCCCEEEEEECC-------CeEEE
Q psy14440        469 SPDRSLLLSCSQ----DN-------TIRLWSLLLWRCLVV--YKGHGHPVWDIKFSPHGYYFASAGHD-------RMARL  528 (711)
Q Consensus       469 spdg~~L~s~s~----Dg-------~V~iwdl~t~~~~~~--~~~h~~~V~~v~~sp~g~~l~sgs~D-------g~i~l  528 (711)
                      ..++..++.|+.    ++       .+.+||..+.+-...  +.........+.+  +++.++.|+.+       ..+.+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence            346677777763    11       277788766543221  1111111112222  56677777754       34778


Q ss_pred             EECCCCceeEE--eecCCCCeeEEEEcCCCCEEEEEEc------CCcEEEEECCCCcEEEEee--CCCCCeEEEEEecCC
Q psy14440        529 WATDSYHPLRL--FVGHYSDVDCVQFHPNSNYVATGSS------DRTIRLWDCVTGSHVRLLT--GHKAPVYALSFSVCG  598 (711)
Q Consensus       529 wd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~latgs~------Dg~I~iwD~~~~~~v~~~~--~h~~~I~~la~spdg  598 (711)
                      ||..+.+=...  +......- +++. -++..++.|+.      -..+.+||..+.+-...-.  .......++.  -++
T Consensus       132 yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~  207 (318)
T 2woz_A          132 YDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKG  207 (318)
T ss_dssp             EETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETT
T ss_pred             EeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECC
Confidence            88876532211  11101111 2222 35666666653      2358999998775332211  1111122222  357


Q ss_pred             CEEEEEeCC-----CcEEEEECCCCeEEEE--eeCCCCCEEEEEEeCCCCEEEEEeCC--------------CcEEEEeC
Q psy14440        599 RFLASAGGD-----GNVHMWDLSNGHLLTL--LTGHTDVVRALCFSRDGNILASSGQD--------------CSVKLWDF  657 (711)
Q Consensus       599 ~~Lasgs~D-----g~I~iwDl~sg~~i~~--l~~h~~~V~sl~fspdg~~Lasgs~D--------------g~V~iWdl  657 (711)
                      ++++.|+.+     ..+.+||+.+.+-...  +....... +++ .-++++++.||.+              ..|.+||+
T Consensus       208 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~  285 (318)
T 2woz_A          208 KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED  285 (318)
T ss_dssp             EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC-EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEET
T ss_pred             EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce-EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeC
Confidence            777777643     3577899887654322  21111111 222 2357777877754              34667776


Q ss_pred             CC
Q psy14440        658 AK  659 (711)
Q Consensus       658 ~~  659 (711)
                      .+
T Consensus       286 ~~  287 (318)
T 2woz_A          286 DK  287 (318)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.51  E-value=0.061  Score=54.95  Aligned_cols=179  Identities=15%  Similarity=0.185  Sum_probs=91.6

Q ss_pred             CEEEEEeCC----CeEEEEECCCCeEEEE--EecCCCCEEEEEEcCCCCEEEEEECC-----CeEEEEECCCCceeEE--
Q psy14440        473 SLLLSCSQD----NTIRLWSLLLWRCLVV--YKGHGHPVWDIKFSPHGYYFASAGHD-----RMARLWATDSYHPLRL--  539 (711)
Q Consensus       473 ~~L~s~s~D----g~V~iwdl~t~~~~~~--~~~h~~~V~~v~~sp~g~~l~sgs~D-----g~i~lwd~~~~~~~~~--  539 (711)
                      ..++.|+.+    ..+.+||+.+.+-...  +......-..+.+  ++..++.|+.+     ..+.+||..+.+=...  
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            344445432    3578888876542221  1111111112222  56677777754     3578888876542211  


Q ss_pred             eecCCCCeeEEEEcCCCCEEEEEEcCC-----cEEEEECCCCcEEEEee--CCCCCeEEEEEecCCCEEEEEeCC-----
Q psy14440        540 FVGHYSDVDCVQFHPNSNYVATGSSDR-----TIRLWDCVTGSHVRLLT--GHKAPVYALSFSVCGRFLASAGGD-----  607 (711)
Q Consensus       540 ~~~h~~~V~~v~~sp~~~~latgs~Dg-----~I~iwD~~~~~~v~~~~--~h~~~I~~la~spdg~~Lasgs~D-----  607 (711)
                      +........++.+  ++..++.|+.++     .+.+||..+.+-...-.  .......++.  -++++++.|+.+     
T Consensus        95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~  170 (302)
T 2xn4_A           95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQ  170 (302)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTE
T ss_pred             CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCc
Confidence            1111111222222  566777776553     57889988765333211  1111222222  356777777643     


Q ss_pred             --CcEEEEECCCCeEEEE--eeCCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEeCCC
Q psy14440        608 --GNVHMWDLSNGHLLTL--LTGHTDVVRALCFSRDGNILASSGQDC-----SVKLWDFAK  659 (711)
Q Consensus       608 --g~I~iwDl~sg~~i~~--l~~h~~~V~sl~fspdg~~Lasgs~Dg-----~V~iWdl~~  659 (711)
                        ..+.+||+.+.+-...  +....... +++. -++++++.||.++     .+.+||+.+
T Consensus       171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~  229 (302)
T 2xn4_A          171 CLSTVECYNATTNEWTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTT  229 (302)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred             cccEEEEEeCCCCcEEECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCC
Confidence              3588999988764332  22111111 2222 2677888887653     688888865

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.46  E-value=1.1  Score=46.97  Aligned_cols=235  Identities=15%  Similarity=0.083  Sum_probs=122.7

Q ss_pred             EEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE------ecCCCCEEEEEEcCC----CCEEEEEE--
Q psy14440        454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY------KGHGHPVWDIKFSPH----GYYFASAG--  521 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~------~~h~~~V~~v~~sp~----g~~l~sgs--  521 (711)
                      ..+...-..-.+|+|.|||+++++--..|.|++++..+++.....      .........|+++|+    +..+++-+  
T Consensus        25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~  104 (347)
T 3das_A           25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA  104 (347)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred             EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence            334444456789999999987766655899999987655543221      123456889999995    43333322  


Q ss_pred             CCCeEEEEECCCC--------ceeEEee----cCCCCeeEEEEcCCCCEEEEEEc-------------CCcEEEEECCCC
Q psy14440        522 HDRMARLWATDSY--------HPLRLFV----GHYSDVDCVQFHPNSNYVATGSS-------------DRTIRLWDCVTG  576 (711)
Q Consensus       522 ~Dg~i~lwd~~~~--------~~~~~~~----~h~~~V~~v~~sp~~~~latgs~-------------Dg~I~iwD~~~~  576 (711)
                      .++.|.-|.....        ....++.    +....-..|.|.|+|.++++.+.             .|.|.-++....
T Consensus       105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~  184 (347)
T 3das_A          105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE  184 (347)
T ss_dssp             SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred             CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence            3455666655541        1111221    11123457999999987666432             245554554321


Q ss_pred             --------cEEEEeeCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCe------------------EEEEeeCCCC
Q psy14440        577 --------SHVRLLTGHKAPVYALSFSVCGRFLASAG-GDGNVHMWDLSNGH------------------LLTLLTGHTD  629 (711)
Q Consensus       577 --------~~v~~~~~h~~~I~~la~spdg~~Lasgs-~Dg~I~iwDl~sg~------------------~i~~l~~h~~  629 (711)
                              .....-.+|.. ...++|+++|.+.++-. .|+.=.|--+..|.                  .+..+..+..
T Consensus       185 ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~  263 (347)
T 3das_A          185 PAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA  263 (347)
T ss_dssp             BCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred             ccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence                    11111225544 45789999887655432 23222222222221                  1222222223


Q ss_pred             CEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        630 VVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       630 ~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      ....++|. +|.+++..-..+.|....+..... ..               ....   -+......+..|+..+||.++.
T Consensus       264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~-~~---------------~~e~---~l~~~~gR~~dv~~~pDG~lyv  323 (347)
T 3das_A          264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAA-AA---------------DPQA---FLEGEYGRLRTVAPAGGDKLWL  323 (347)
T ss_dssp             CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEE-SS---------------CCEE---ESTTTSSCEEEEEEEETTEEEE
T ss_pred             CCcceEEE-cCceeeccccCCEEEEEEecCCce-ec---------------ceEE---eecCCCCCccEEEECCCCcEEE
Confidence            56778887 455555544455555555432110 00               0011   1222345778888888876653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.41  E-value=0.21  Score=61.19  Aligned_cols=192  Identities=11%  Similarity=0.176  Sum_probs=120.0

Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC-CceeEEeecC---
Q psy14440        468 FSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS-YHPLRLFVGH---  543 (711)
Q Consensus       468 fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~-~~~~~~~~~h---  543 (711)
                      .+|..+.|+.-. ..++.|||+++...+..+.- ...|.-=.|-... .++..+ +..|+.|++.. ..+.+.|..|   
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L  148 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL  148 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence            355555554443 57899999998888777664 4456566676443 444443 46799999974 3566666655   


Q ss_pred             -CCCeeEEEEcCCCCEEEEEE-------cCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecC---CCEEEEEeC---CCc
Q psy14440        544 -YSDVDCVQFHPNSNYVATGS-------SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVC---GRFLASAGG---DGN  609 (711)
Q Consensus       544 -~~~V~~v~~sp~~~~latgs-------~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spd---g~~Lasgs~---Dg~  609 (711)
                       ...|..-..+++.++++..+       ..|.+.+|.+..+. -+.+.||.+....+....+   ...++.+..   .|+
T Consensus       149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k  227 (1630)
T 1xi4_A          149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK  227 (1630)
T ss_pred             ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCce
Confidence             45677778888888876543       35788899876553 3556677665544443211   122222221   268


Q ss_pred             EEEEECCCC---e------EEEEee---CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q psy14440        610 VHMWDLSNG---H------LLTLLT---GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEV  664 (711)
Q Consensus       610 I~iwDl~sg---~------~i~~l~---~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  664 (711)
                      ++|.++...   .      .+..+-   ...+-..++..|+.-.++...+.-|.|++||+.+++...
T Consensus       228 Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence            999988543   1      111111   112334567777777788888899999999999876543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.16  E-value=0.14  Score=50.10  Aligned_cols=176  Identities=15%  Similarity=0.080  Sum_probs=99.9

Q ss_pred             CCEEEEEeCCCeEEEEECCCCeE-----EEEEecC--CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee------E
Q psy14440        472 RSLLLSCSQDNTIRLWSLLLWRC-----LVVYKGH--GHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL------R  538 (711)
Q Consensus       472 g~~L~s~s~Dg~V~iwdl~t~~~-----~~~~~~h--~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~------~  538 (711)
                      ..+|++...| +|++=.......     ..+..++  =..+.+++|+|+|.+.++  .+|.++-.+..+....      .
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence            3456666666 666554433221     0111122  236779999999987776  6777766665442211      1


Q ss_pred             Eee-cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-------EEEeeCCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy14440        539 LFV-GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH-------VRLLTGHKAPVYALSFSVCGRFLASAGGDGNV  610 (711)
Q Consensus       539 ~~~-~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~-------v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I  610 (711)
                      .+- +--....++.|+++|.+.++  .||.|+-++--+...       ..+-.+--..+..|.+.|+|.+.++.  ||.+
T Consensus        81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A           81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            110 01111478999999988887  579998887533211       11111122468999999999887776  7775


Q ss_pred             EEEECCCCe------EEEEee-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        611 HMWDLSNGH------LLTLLT-GHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       611 ~iwDl~sg~------~i~~l~-~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      +-+...++.      ....+. ........+.|+++|.+.++.  +|  ++|-..
T Consensus       157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~  207 (236)
T 1tl2_A          157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDY  207 (236)
T ss_dssp             EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEES
T ss_pred             EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecC
Confidence            443322111      011111 222345567799999877766  66  555543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.92  E-value=0.76  Score=50.17  Aligned_cols=156  Identities=17%  Similarity=0.230  Sum_probs=89.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeE--Eeec------CCCCeeEEEEcCC---CCEEEEEEc------
Q psy14440        502 GHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLR--LFVG------HYSDVDCVQFHPN---SNYVATGSS------  564 (711)
Q Consensus       502 ~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~--~~~~------h~~~V~~v~~sp~---~~~latgs~------  564 (711)
                      -...+.|+|.|+|+++++-...+.|++++..++....  .+..      .......|+|+|+   +.+|.++..      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            4467899999999877765444578888765554322  2211      2345679999995   455544432      


Q ss_pred             -------CCcEEEEECCCC--c---EEEE---ee-CCCCCeEEEEEecCCCEEEEEeCC---------------------
Q psy14440        565 -------DRTIRLWDCVTG--S---HVRL---LT-GHKAPVYALSFSVCGRFLASAGGD---------------------  607 (711)
Q Consensus       565 -------Dg~I~iwD~~~~--~---~v~~---~~-~h~~~I~~la~spdg~~Lasgs~D---------------------  607 (711)
                             ...|.-|+...+  .   ....   +. +.......|+|.+||.+.++.+..                     
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~  185 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQ  185 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHH
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccc
Confidence                   134555654322  1   1111   21 122347899999999877765532                     


Q ss_pred             -----------CcEEEEECCCCe-----------EEEEe-eCCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEeCCC
Q psy14440        608 -----------GNVHMWDLSNGH-----------LLTLL-TGHTDVVRALCFSRDGNILASS-GQDCSVKLWDFAK  659 (711)
Q Consensus       608 -----------g~I~iwDl~sg~-----------~i~~l-~~h~~~V~sl~fspdg~~Lasg-s~Dg~V~iWdl~~  659 (711)
                                 |.|.-++.. |+           ....+ .+|. ....++|+++|.++++- +.++.-.|.-+..
T Consensus       186 ~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~R-Np~gla~dp~G~L~~~d~g~~~~dein~i~~  259 (454)
T 1cru_A          186 ELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGHR-NPQGLAFTPNGKLLQSEQGPNSDDEINLIVK  259 (454)
T ss_dssp             HHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCCS-EEEEEEECTTSCEEEEEECSSSCEEEEECCT
T ss_pred             cccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECCC-CcceEEECCCCCEEEEecCCCCCeEEEEecC
Confidence                       334444432 22           11122 2443 46799999988866553 4455555655544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.91  E-value=0.094  Score=53.83  Aligned_cols=182  Identities=11%  Similarity=0.061  Sum_probs=94.1

Q ss_pred             CCCEEEEEeCC----CeEEEEECCCCeEEEE--EecCCCCEEEEEEcCCCCEEEEEEC----C-----CeEEEEECCCCc
Q psy14440        471 DRSLLLSCSQD----NTIRLWSLLLWRCLVV--YKGHGHPVWDIKFSPHGYYFASAGH----D-----RMARLWATDSYH  535 (711)
Q Consensus       471 dg~~L~s~s~D----g~V~iwdl~t~~~~~~--~~~h~~~V~~v~~sp~g~~l~sgs~----D-----g~i~lwd~~~~~  535 (711)
                      ++..++.|+.+    ..+.+||..+.+-...  +.........+.+  ++..++.|+.    +     ..+.+||..+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            45566666632    3588999876543222  1111111112222  5667777765    2     457888887653


Q ss_pred             eeEE--eecCCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCCCcEEEEe--eCCCCCeEEEEEecCCCEEEEEeC
Q psy14440        536 PLRL--FVGHYSDVDCVQFHPNSNYVATGSSD-----RTIRLWDCVTGSHVRLL--TGHKAPVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       536 ~~~~--~~~h~~~V~~v~~sp~~~~latgs~D-----g~I~iwD~~~~~~v~~~--~~h~~~I~~la~spdg~~Lasgs~  606 (711)
                      =...  +........++.+  ++..++.|+.+     ..+.+||..+.+-...-  ........++.+  ++++++.|+.
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  177 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF  177 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence            2111  1111112222222  56666666543     46889998876533221  111122222222  6777777775


Q ss_pred             C-----CcEEEEECCCCeEEEE--eeCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCC
Q psy14440        607 D-----GNVHMWDLSNGHLLTL--LTGHTDVVRALCFSRDGNILASSGQD-----CSVKLWDFAKL  660 (711)
Q Consensus       607 D-----g~I~iwDl~sg~~i~~--l~~h~~~V~sl~fspdg~~Lasgs~D-----g~V~iWdl~~~  660 (711)
                      +     ..+.+||+.+.+-...  +.........+.+  ++++++.||.+     ..+.+||+.+.
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            4     4689999987754322  1111111122222  67788888765     46888988753

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.80  E-value=0.43  Score=58.47  Aligned_cols=246  Identities=11%  Similarity=0.101  Sum_probs=141.1

Q ss_pred             CCeEEEEeCCCCceee--------eccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEe
Q psy14440        408 ESYIKLWSLVPQKLKA--------MKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCS  479 (711)
Q Consensus       408 dg~I~vWdl~~~~~~~--------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s  479 (711)
                      ...|.|-|+....-..        ...++....++... ...++++|..+...++.+.-. ..|.--.|-.+.. |+-.+
T Consensus        47 ~~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~-l~lVT  123 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT-VALVT  123 (1630)
T ss_pred             CceEEEEECCCCCCcccccccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCCe-eEEEc
Confidence            3468888876533111        01122233444443 778999998888777666543 4577778875554 33333


Q ss_pred             CCCeEEEEECCC-CeEEEEEecC----CCCEEEEEEcCCCCEEEEEE-------CCCeEEEEECCCCceeEEeecCCCCe
Q psy14440        480 QDNTIRLWSLLL-WRCLVVYKGH----GHPVWDIKFSPHGYYFASAG-------HDRMARLWATDSYHPLRLFVGHYSDV  547 (711)
Q Consensus       480 ~Dg~V~iwdl~t-~~~~~~~~~h----~~~V~~v~~sp~g~~l~sgs-------~Dg~i~lwd~~~~~~~~~~~~h~~~V  547 (711)
                       +..|.-|++.. ......+..|    +..|..-..+++.++++..|       -.|.+.+|+.+.+ ..+.+.||.+..
T Consensus       124 -~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F  201 (1630)
T 1xi4_A          124 -DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF  201 (1630)
T ss_pred             -CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhh
Confidence             34599999963 2333334333    45676777788888777554       3578899998764 344566776655


Q ss_pred             eEEEEcCC---CCEEEEEEc---CCcEEEEECCCC---cE------EEEeeCC---CCCeEEEEEecCCCEEEEEeCCCc
Q psy14440        548 DCVQFHPN---SNYVATGSS---DRTIRLWDCVTG---SH------VRLLTGH---KAPVYALSFSVCGRFLASAGGDGN  609 (711)
Q Consensus       548 ~~v~~sp~---~~~latgs~---Dg~I~iwD~~~~---~~------v~~~~~h---~~~I~~la~spdg~~Lasgs~Dg~  609 (711)
                      ..+....+   ...++.+..   .+.++|.++...   ..      +..+...   ..--.++..|+....+..-+.-|.
T Consensus       202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~  281 (1630)
T 1xi4_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY  281 (1630)
T ss_pred             heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce
Confidence            44444321   122222221   368888887432   11      1111111   222345677777778888888999


Q ss_pred             EEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        610 VHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       610 I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      |.+||+.+|.++..-+-....|...+-+....=+++....|.|.--.+.
T Consensus       282 ~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~  330 (1630)
T 1xi4_A          282 IHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE  330 (1630)
T ss_pred             EEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence            9999999999876655444444444433332223333355555444443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.74  E-value=0.39  Score=49.22  Aligned_cols=177  Identities=10%  Similarity=0.022  Sum_probs=91.0

Q ss_pred             EEEEeCCCeEEEEECCCCeEEE-EEecCCCCEEEEEEcCCCCEEEEEEC----C-------CeEEEEECCCCceeEEeec
Q psy14440        475 LLSCSQDNTIRLWSLLLWRCLV-VYKGHGHPVWDIKFSPHGYYFASAGH----D-------RMARLWATDSYHPLRLFVG  542 (711)
Q Consensus       475 L~s~s~Dg~V~iwdl~t~~~~~-~~~~h~~~V~~v~~sp~g~~l~sgs~----D-------g~i~lwd~~~~~~~~~~~~  542 (711)
                      ++.|+  ..+.+||..+.+-.. .+.............-++..++.|+.    +       ..+.+||..+.+= ..+..
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-~~~~~   84 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW-LGMPP   84 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE-EECCC
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE-EECCC
Confidence            44454  568999998766332 11111122222233346778888873    1       1267788876532 11111


Q ss_pred             ---CCCCeeEEEEcCCCCEEEEEEcC--------CcEEEEECCCCcEEEEee--CCCCCeEEEEEecCCCEEEEEeC-C-
Q psy14440        543 ---HYSDVDCVQFHPNSNYVATGSSD--------RTIRLWDCVTGSHVRLLT--GHKAPVYALSFSVCGRFLASAGG-D-  607 (711)
Q Consensus       543 ---h~~~V~~v~~sp~~~~latgs~D--------g~I~iwD~~~~~~v~~~~--~h~~~I~~la~spdg~~Lasgs~-D-  607 (711)
                         ..... +++.. ++..++.|+.+        ..+.+||..+++-...-.  .......++  .-+++.++.|+. + 
T Consensus        85 ~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~  160 (315)
T 4asc_A           85 LPSPRCLF-GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL--SHMDLVYVIGGKGSD  160 (315)
T ss_dssp             BSSCEESC-EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCTT
T ss_pred             CCcchhce-eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE--EECCEEEEEeCCCCC
Confidence               11111 22222 55666666632        458999998765322111  111112222  246777777775 2 


Q ss_pred             ----CcEEEEECCCCeEEEE--eeCCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCC
Q psy14440        608 ----GNVHMWDLSNGHLLTL--LTGHTDVVRALCFSRDGNILASSGQDC-----SVKLWDFAKL  660 (711)
Q Consensus       608 ----g~I~iwDl~sg~~i~~--l~~h~~~V~sl~fspdg~~Lasgs~Dg-----~V~iWdl~~~  660 (711)
                          ..+.+||+.+.+-...  +.........+  .-++++++.||.++     .+.+||+.+.
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEE--EECCEEEEEeccCCCCccceEEEEECCCC
Confidence                4689999988754322  11111111222  22678888888665     4788887653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.58  E-value=0.013  Score=61.62  Aligned_cols=146  Identities=10%  Similarity=0.012  Sum_probs=87.4

Q ss_pred             CEEEEEeCCCeEEEEECCCCeEEEEEecC-CCCEEEEEEc--CCCCEEEEE--ECCCeEEEEECCCCceeEEeec----C
Q psy14440        473 SLLLSCSQDNTIRLWSLLLWRCLVVYKGH-GHPVWDIKFS--PHGYYFASA--GHDRMARLWATDSYHPLRLFVG----H  543 (711)
Q Consensus       473 ~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h-~~~V~~v~~s--p~g~~l~sg--s~Dg~i~lwd~~~~~~~~~~~~----h  543 (711)
                      ..++.++.||.|..+|..+|+.+..++.. ..++....-.  +.+..++.+  +.||.+..++..++.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47889999999999999999999988754 1222221100  112233333  5899999999887744333221    1


Q ss_pred             CCCeeE---EEE-c----CCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCC--CC-----eEEEEEe-----cCCCEEEE
Q psy14440        544 YSDVDC---VQF-H----PNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHK--AP-----VYALSFS-----VCGRFLAS  603 (711)
Q Consensus       544 ~~~V~~---v~~-s----p~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~--~~-----I~~la~s-----pdg~~Las  603 (711)
                      .+++..   ... .    ..+..+++|+.+|++...|+++|+.+..+....  +.     ..|....     -.+..|+.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            122211   000 0    145688999999999999999999998886321  11     1122111     12456777


Q ss_pred             EeCCCcEEEEECCCCe
Q psy14440        604 AGGDGNVHMWDLSNGH  619 (711)
Q Consensus       604 gs~Dg~I~iwDl~sg~  619 (711)
                      |..+..|.+.+ ++|+
T Consensus       171 g~~~y~v~~~~-~sG~  185 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA  185 (339)
T ss_dssp             EEEEEECEECC-TTSC
T ss_pred             ecceEEEEEEC-CCCC
Confidence            77777777766 4453

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.49  E-value=0.68  Score=47.58  Aligned_cols=171  Identities=6%  Similarity=-0.009  Sum_probs=97.8

Q ss_pred             CCCCEEEEEe--CCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC--------------CeEEEEECCC
Q psy14440        470 PDRSLLLSCS--QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD--------------RMARLWATDS  533 (711)
Q Consensus       470 pdg~~L~s~s--~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D--------------g~i~lwd~~~  533 (711)
                      .++.+|+...  .++.|...+.+.... ..+..  .  .+--++++|.+|+.+...              ..|+..+++.
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~--~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSN--D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCSC-EEEEE--E--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCCC-EEccC--C--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            3555555443  245566666543332 22221  1  123456778877776542              4677788887


Q ss_pred             CceeEEeecCCCCeeEEEEcCCCCEEEEEE----cCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeC-CC
Q psy14440        534 YHPLRLFVGHYSDVDCVQFHPNSNYVATGS----SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG-DG  608 (711)
Q Consensus       534 ~~~~~~~~~h~~~V~~v~~sp~~~~latgs----~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~-Dg  608 (711)
                      .........     .+..|++++++|+...    .+..|...++.... ...+..+..    .+|+++|+.|+-.+. ..
T Consensus        98 ~~~~~l~~~-----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~  167 (302)
T 3s25_A           98 HGSTVLDPD-----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG  167 (302)
T ss_dssp             CCCEEEECS-----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred             CcceEeecC-----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence            654333221     2346777888988776    34456667776444 344444433    456788888886654 57


Q ss_pred             cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCC--cEEEEeCCC
Q psy14440        609 NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDC--SVKLWDFAK  659 (711)
Q Consensus       609 ~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg--~V~iWdl~~  659 (711)
                      .|.+.++..+.....+.+   ... ..++|++.+|+-...++  .|..-++..
T Consensus       168 ~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG  216 (302)
T 3s25_A          168 QLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN  216 (302)
T ss_dssp             CEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred             eEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence            899999877665443332   222 34668888877665443  444444443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.42  E-value=0.21  Score=52.27  Aligned_cols=132  Identities=8%  Similarity=-0.049  Sum_probs=61.9

Q ss_pred             CeEEEEECCCCc--eeEEeecCCCCeeEEEEcCCCCEEEEEEc------CCcEEEEEC--CCCcEEEEeeC---CCCCeE
Q psy14440        524 RMARLWATDSYH--PLRLFVGHYSDVDCVQFHPNSNYVATGSS------DRTIRLWDC--VTGSHVRLLTG---HKAPVY  590 (711)
Q Consensus       524 g~i~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~latgs~------Dg~I~iwD~--~~~~~v~~~~~---h~~~I~  590 (711)
                      ..+.+||..+.+  .+..+......-.+++.. +++.++.|+.      ...+.+||+  .+.+ -..+..   ......
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~~  245 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVAG  245 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCBS
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCccccc
Confidence            578889987653  222221111111233333 5556666653      345777887  3332 222211   111111


Q ss_pred             EEEEecCCCEEEEEeCC----------------------CcEEEEECCCCe--EEEEeeCCCCCEEEEEEeCCCCEEEEE
Q psy14440        591 ALSFSVCGRFLASAGGD----------------------GNVHMWDLSNGH--LLTLLTGHTDVVRALCFSRDGNILASS  646 (711)
Q Consensus       591 ~la~spdg~~Lasgs~D----------------------g~I~iwDl~sg~--~i~~l~~h~~~V~sl~fspdg~~Lasg  646 (711)
                      ..+...++++++.|+.+                      ..+.+||+.+.+  .+..+......-..  ..-++++++.|
T Consensus       246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~G  323 (357)
T 2uvk_A          246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIG  323 (357)
T ss_dssp             CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEE
T ss_pred             ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEe
Confidence            12233467777777632                      257899987654  44444332222222  23467888888


Q ss_pred             eCCC------cEEEEeCCC
Q psy14440        647 GQDC------SVKLWDFAK  659 (711)
Q Consensus       647 s~Dg------~V~iWdl~~  659 (711)
                      |.++      .|.+++++.
T Consensus       324 G~~~~~~~~~~v~~l~~~~  342 (357)
T 2uvk_A          324 GETAGGKAVTDSVLITVKD  342 (357)
T ss_dssp             EECGGGCEEEEEEEEEC-C
T ss_pred             eeCCCCCEeeeEEEEEEcC
Confidence            8653      244446654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.22  E-value=0.23  Score=52.40  Aligned_cols=142  Identities=12%  Similarity=0.135  Sum_probs=78.9

Q ss_pred             CCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc--eeE----EeecCCCCeeEEEEcCC---CCEEEEEE-c-------C
Q psy14440        503 HPVWDIKFSPHGYYFASAGHDRMARLWATDSYH--PLR----LFVGHYSDVDCVQFHPN---SNYVATGS-S-------D  565 (711)
Q Consensus       503 ~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~--~~~----~~~~h~~~V~~v~~sp~---~~~latgs-~-------D  565 (711)
                      ...+.|+|.|+|+.++++...|.|++++.+...  .+.    .+.........|+|+|+   +.+|.++. .       .
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            356899999999834455678999999854321  111    11122345789999995   44444443 2       2


Q ss_pred             CcEEEEECCCC--c--EEE-EeeC------CCCCeEEEEEecCCCEEEEEeC-------------CCcEEEEECCCC---
Q psy14440        566 RTIRLWDCVTG--S--HVR-LLTG------HKAPVYALSFSVCGRFLASAGG-------------DGNVHMWDLSNG---  618 (711)
Q Consensus       566 g~I~iwD~~~~--~--~v~-~~~~------h~~~I~~la~spdg~~Lasgs~-------------Dg~I~iwDl~sg---  618 (711)
                      ..|..|++..+  .  ... .+.+      .......|+|.|||.+.++.+.             .|+|.-+|....   
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            35666666533  1  112 1211      1112357999999966555443             246777775421   


Q ss_pred             ---------eEEEEe-eCCCCCEEEEEEeC-CCCEEEE
Q psy14440        619 ---------HLLTLL-TGHTDVVRALCFSR-DGNILAS  645 (711)
Q Consensus       619 ---------~~i~~l-~~h~~~V~sl~fsp-dg~~Las  645 (711)
                               .....+ .+|. ....++|++ +|+++++
T Consensus       178 ~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred             CCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence                     011111 2343 368999999 5655544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.18  E-value=0.88  Score=46.57  Aligned_cols=172  Identities=11%  Similarity=0.114  Sum_probs=86.1

Q ss_pred             eEEEEECCCCeEEE-EEecCCCCEEEEEEcCCCCEEEEEEC----CC-------eEEEEECCCCceeEE--eecCCCCee
Q psy14440        483 TIRLWSLLLWRCLV-VYKGHGHPVWDIKFSPHGYYFASAGH----DR-------MARLWATDSYHPLRL--FVGHYSDVD  548 (711)
Q Consensus       483 ~V~iwdl~t~~~~~-~~~~h~~~V~~v~~sp~g~~l~sgs~----Dg-------~i~lwd~~~~~~~~~--~~~h~~~V~  548 (711)
                      .+.+||..+.+-.. ................++..++.|+.    ++       .+.+||..+.+=...  +....... 
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-  103 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-  103 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-
Confidence            37888887665433 12111111222233446778888873    12       167788776532111  11111112 


Q ss_pred             EEEEcCCCCEEEEEEcC-------CcEEEEECCCCcEEEEee--CCCCCeEEEEEecCCCEEEEEeC------CCcEEEE
Q psy14440        549 CVQFHPNSNYVATGSSD-------RTIRLWDCVTGSHVRLLT--GHKAPVYALSFSVCGRFLASAGG------DGNVHMW  613 (711)
Q Consensus       549 ~v~~sp~~~~latgs~D-------g~I~iwD~~~~~~v~~~~--~h~~~I~~la~spdg~~Lasgs~------Dg~I~iw  613 (711)
                      +++.. ++..++.|+.+       ..+.+||..+.+-...-.  .....-.++  .-++++++.|+.      -..+.+|
T Consensus       104 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~y  180 (318)
T 2woz_A          104 GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVI--SHNGMIYCLGGKTDDKKCTNRVFIY  180 (318)
T ss_dssp             EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEE--EETTEEEEECCEESSSCBCCCEEEE
T ss_pred             ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEE--EECCEEEEEcCCCCCCCccceEEEE
Confidence            22222 56666677653       247889988765332211  111111122  246777777764      2359999


Q ss_pred             ECCCCeEEEE--eeCCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCC
Q psy14440        614 DLSNGHLLTL--LTGHTDVVRALCFSRDGNILASSGQDC-----SVKLWDFAKL  660 (711)
Q Consensus       614 Dl~sg~~i~~--l~~h~~~V~sl~fspdg~~Lasgs~Dg-----~V~iWdl~~~  660 (711)
                      |+.+.+-...  +....... +++. -++++++.||.++     .+.+||+.+.
T Consensus       181 d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          181 NPKKGDWKDLAPMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             ETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             cCCCCEEEECCCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence            9988764332  21111111 2222 2677888887543     4678887653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.17  E-value=3.9  Score=45.29  Aligned_cols=100  Identities=14%  Similarity=0.076  Sum_probs=66.9

Q ss_pred             CeeEEEEcCCCCEEEEEE-cCCcEEEEECCCC------cE-------EEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q psy14440        546 DVDCVQFHPNSNYVATGS-SDRTIRLWDCVTG------SH-------VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVH  611 (711)
Q Consensus       546 ~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~------~~-------v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~  611 (711)
                      ....+.++|||+|+++++ -+.+|.++|+..-      +.       +.... -.-.....+|.++|.-..|---|..|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEE
Confidence            346788999999988876 4789999998741      11       22222 234466789999996555666899999


Q ss_pred             EEECCCC----------eEEEEeeCCCCCEEEEEE------eCCCCEEEEEe
Q psy14440        612 MWDLSNG----------HLLTLLTGHTDVVRALCF------SRDGNILASSG  647 (711)
Q Consensus       612 iwDl~sg----------~~i~~l~~h~~~V~sl~f------spdg~~Lasgs  647 (711)
                      -|++...          ..+..+.-|-..- .+.-      .+||++|++..
T Consensus       403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred             EEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence            9998653          4666666554322 2222      45777777764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.99  E-value=0.46  Score=49.56  Aligned_cols=139  Identities=6%  Similarity=-0.054  Sum_probs=65.0

Q ss_pred             CeEEEEECCCCe--EEEEEecCCCCEEEEEEcCCCCEEEEEEC------CCeEEEEEC--CCCceeEEeec---CCCCee
Q psy14440        482 NTIRLWSLLLWR--CLVVYKGHGHPVWDIKFSPHGYYFASAGH------DRMARLWAT--DSYHPLRLFVG---HYSDVD  548 (711)
Q Consensus       482 g~V~iwdl~t~~--~~~~~~~h~~~V~~v~~sp~g~~l~sgs~------Dg~i~lwd~--~~~~~~~~~~~---h~~~V~  548 (711)
                      ..+.+||..+.+  .+..+......-.+++.. ++++++.|+.      ...+.+||+  .+.. -..+..   ......
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~~  245 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVAG  245 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCBS
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCccccc
Confidence            478999987643  333322111110122222 4566666653      345667776  3221 111111   111111


Q ss_pred             EEEEcCCCCEEEEEEcC----------------------CcEEEEECCCCcE--EEEeeCCCCCeEEEEEecCCCEEEEE
Q psy14440        549 CVQFHPNSNYVATGSSD----------------------RTIRLWDCVTGSH--VRLLTGHKAPVYALSFSVCGRFLASA  604 (711)
Q Consensus       549 ~v~~sp~~~~latgs~D----------------------g~I~iwD~~~~~~--v~~~~~h~~~I~~la~spdg~~Lasg  604 (711)
                      +.+...++..++.|+.+                      ..+.+||+.+.+-  +..+......-.+  +.-++++++.|
T Consensus       246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~G  323 (357)
T 2uvk_A          246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIG  323 (357)
T ss_dssp             CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEE
T ss_pred             ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEe
Confidence            11222256666666632                      2577899876542  3233222222222  33468888888


Q ss_pred             eCCC------cEEEEECCCCeEEEEe
Q psy14440        605 GGDG------NVHMWDLSNGHLLTLL  624 (711)
Q Consensus       605 s~Dg------~I~iwDl~sg~~i~~l  624 (711)
                      |.++      .|.++++++++.+...
T Consensus       324 G~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          324 GETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             EECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             eeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            8653      3666688877765543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.79  E-value=5.8  Score=43.21  Aligned_cols=252  Identities=16%  Similarity=0.170  Sum_probs=121.6

Q ss_pred             CCceEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEE
Q psy14440        387 RQQVTCAEISEDVS-ILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRK  465 (711)
Q Consensus       387 ~~~V~~l~fs~dg~-~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~  465 (711)
                      -..-+.|+|.|||+ .|+++...|.|++++..+...... . .+...+...             +    ...+..+....
T Consensus        13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~-~-~~~~~~~~~-------------g----~~~~~e~Gllg   73 (463)
T 2wg3_C           13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEP-Y-LDIHKLVQS-------------G----IKGGDERGLLS   73 (463)
T ss_dssp             ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSC-S-EECTTTBCC-------------C----CSSSCCCSEEE
T ss_pred             CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeee-e-cCCcceecc-------------C----ccccCCCccee
Confidence            35678999999996 455556789999997543211000 0 000000000             0    00012345677


Q ss_pred             EEEcCC----CCEEEEEeC--C----------CeEEEEECCC----------CeEEEEEe--cCCCCEEEEEEcCCCCEE
Q psy14440        466 LSFSPD----RSLLLSCSQ--D----------NTIRLWSLLL----------WRCLVVYK--GHGHPVWDIKFSPHGYYF  517 (711)
Q Consensus       466 l~fspd----g~~L~s~s~--D----------g~V~iwdl~t----------~~~~~~~~--~h~~~V~~v~~sp~g~~l  517 (711)
                      |+|+|+    +.+.++-+.  +          ..|.-|.+..          .+.+..+.  ...+....|+|.|+|.++
T Consensus        74 ia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LY  153 (463)
T 2wg3_C           74 LAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLY  153 (463)
T ss_dssp             EEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEE
T ss_pred             eEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEE
Confidence            888875    333333221  1          1343454431          23333332  223456789999999877


Q ss_pred             EEEECCC-----------------eEEEEECCCCc-------------------eeEEee-cCCCCeeEEEEcCC-----
Q psy14440        518 ASAGHDR-----------------MARLWATDSYH-------------------PLRLFV-GHYSDVDCVQFHPN-----  555 (711)
Q Consensus       518 ~sgs~Dg-----------------~i~lwd~~~~~-------------------~~~~~~-~h~~~V~~v~~sp~-----  555 (711)
                      ++.+..+                 .|.-.+.+...                   ...++. ||.. ...++|++.     
T Consensus       154 v~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~  232 (463)
T 2wg3_C          154 IILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDIN  232 (463)
T ss_dssp             EEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTT
T ss_pred             EEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcc
Confidence            7766433                 23333444310                   011222 3433 457899986     


Q ss_pred             CC-EEEEEEcCC----cEEEEECCCCc------EEEEeeCCC-CCeEEEEEecC-------CCEEEEEeCCCcEEEEECC
Q psy14440        556 SN-YVATGSSDR----TIRLWDCVTGS------HVRLLTGHK-APVYALSFSVC-------GRFLASAGGDGNVHMWDLS  616 (711)
Q Consensus       556 ~~-~latgs~Dg----~I~iwD~~~~~------~v~~~~~h~-~~I~~la~spd-------g~~Lasgs~Dg~I~iwDl~  616 (711)
                      |+ +++.+...|    .-.|..+..|.      .+..+..|. ..+..+.|-..       |.+|+ +...+.|....+.
T Consensus       233 G~l~~~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~  311 (463)
T 2wg3_C          233 INLTILCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQS  311 (463)
T ss_dssp             CSEEEEEECC------CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-
T ss_pred             cceEEEecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeC
Confidence            34 344332112    22344443332      233333221 46777777432       34444 4445777666664


Q ss_pred             CCe---EEEEe-e--------CCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEeCCC
Q psy14440        617 NGH---LLTLL-T--------GHTDVVRALCFSRDGNILASSGQD-----CSVKLWDFAK  659 (711)
Q Consensus       617 sg~---~i~~l-~--------~h~~~V~sl~fspdg~~Lasgs~D-----g~V~iWdl~~  659 (711)
                      .+.   ....+ .        .....+.++.+.+||.++++....     ..=+||.+..
T Consensus       312 ~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~  371 (463)
T 2wg3_C          312 PVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVD  371 (463)
T ss_dssp             ----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEEC
T ss_pred             CCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEecC
Confidence            332   11122 1        123578999999999988876521     2335676653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.71  E-value=0.2  Score=48.96  Aligned_cols=131  Identities=13%  Similarity=0.087  Sum_probs=78.7

Q ss_pred             CCEEEEEECCCeEEEEECCCCc------eeEEeecC--CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE------
Q psy14440        514 GYYFASAGHDRMARLWATDSYH------PLRLFVGH--YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV------  579 (711)
Q Consensus       514 g~~l~sgs~Dg~i~lwd~~~~~------~~~~~~~h--~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v------  579 (711)
                      ..+|++...| +++.=..-+..      ....+ +.  -..+.+++|||+|.+.++  .+|.+.-.+..++...      
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            3456666666 65554443322      11222 22  357889999999987777  6787777776552211      


Q ss_pred             EEe-e-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-Ce------EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCC
Q psy14440        580 RLL-T-GHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN-GH------LLTLLTGHTDVVRALCFSRDGNILASSGQDC  650 (711)
Q Consensus       580 ~~~-~-~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s-g~------~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg  650 (711)
                      ..+ . +-+. ..++.|.++|.+.++  .||.|+-++-.+ +.      -...-.+--..+..|.|.|+|.+.+..  ||
T Consensus        80 t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg  154 (236)
T 1tl2_A           80 KKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ  154 (236)
T ss_dssp             EEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred             cEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CC
Confidence            111 1 1111 478899999988877  569998887533 11      011111122468999999999977766  77


Q ss_pred             cEE
Q psy14440        651 SVK  653 (711)
Q Consensus       651 ~V~  653 (711)
                      .++
T Consensus       155 ~ly  157 (236)
T 1tl2_A          155 QFY  157 (236)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            743

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.37  E-value=0.71  Score=53.36  Aligned_cols=148  Identities=11%  Similarity=0.086  Sum_probs=82.2

Q ss_pred             CCCEEEEEeCC------CeEEEEECCCC--eEEEEEecCCCCEEEEEEcCCCCEEEEEECCC--eEEEEECCCCceeEEe
Q psy14440        471 DRSLLLSCSQD------NTIRLWSLLLW--RCLVVYKGHGHPVWDIKFSPHGYYFASAGHDR--MARLWATDSYHPLRLF  540 (711)
Q Consensus       471 dg~~L~s~s~D------g~V~iwdl~t~--~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg--~i~lwd~~~~~~~~~~  540 (711)
                      ++..++.||.+      ..+.+||..+.  +.+..+......- +++...+++.++.||.++  .+.+||..+..= ..+
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W-~~~  528 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIF-KDV  528 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEE-EEC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCce-EEc
Confidence            66677777653      35888998764  3332222111111 223323778888888655  688999887531 111


Q ss_pred             e------cCCCCeeEEEEcCC-CCEEEEEEc--C-----CcEEEEECCCCcE-----EEEeeC----CCCCeEEEEEecC
Q psy14440        541 V------GHYSDVDCVQFHPN-SNYVATGSS--D-----RTIRLWDCVTGSH-----VRLLTG----HKAPVYALSFSVC  597 (711)
Q Consensus       541 ~------~h~~~V~~v~~sp~-~~~latgs~--D-----g~I~iwD~~~~~~-----v~~~~~----h~~~I~~la~spd  597 (711)
                      .      .......++.+..+ +..++.|+.  +     +.+.+||+.+..-     ...+..    ...... ++...+
T Consensus       529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~  607 (695)
T 2zwa_A          529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-IKYITP  607 (695)
T ss_dssp             CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-EEEEET
T ss_pred             cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce-EEEeCC
Confidence            1      12222334555555 566677765  2     3588999988761     122211    112222 233334


Q ss_pred             CCEEEEEeC--------CCcEEEEECCCCeEE
Q psy14440        598 GRFLASAGG--------DGNVHMWDLSNGHLL  621 (711)
Q Consensus       598 g~~Lasgs~--------Dg~I~iwDl~sg~~i  621 (711)
                      +++++.||.        ...|.+||+.+.+-.
T Consensus       608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          608 RKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             TEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             CEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            777777774        346999999887654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.33  E-value=1.1  Score=51.85  Aligned_cols=189  Identities=10%  Similarity=0.053  Sum_probs=101.0

Q ss_pred             CCCCEEEEEeCC----CeEEEEECCCCeEEEEE-e-------cCCCCEEEEEEcCCCCEEEEEECCC------eEEEEEC
Q psy14440        470 PDRSLLLSCSQD----NTIRLWSLLLWRCLVVY-K-------GHGHPVWDIKFSPHGYYFASAGHDR------MARLWAT  531 (711)
Q Consensus       470 pdg~~L~s~s~D----g~V~iwdl~t~~~~~~~-~-------~h~~~V~~v~~sp~g~~l~sgs~Dg------~i~lwd~  531 (711)
                      -++..++.||.+    ..+.+||..+.+-...- .       .....-..+.+..+++.++.||.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777643    45888888765433222 1       1111222333322677778877543      5778888


Q ss_pred             CCCc--eeEEeecCCCCeeEEEEcCCCCEEEEEEcCC--cEEEEECCCCcEEEEee-----CCCCCeEEEEEecC-CCEE
Q psy14440        532 DSYH--PLRLFVGHYSDVDCVQFHPNSNYVATGSSDR--TIRLWDCVTGSHVRLLT-----GHKAPVYALSFSVC-GRFL  601 (711)
Q Consensus       532 ~~~~--~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg--~I~iwD~~~~~~v~~~~-----~h~~~I~~la~spd-g~~L  601 (711)
                      .+..  .+..+..... -.+++...++..++.|+.++  .+.+||..++.-...-.     .......++.+..+ ++.+
T Consensus       476 ~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            7642  2211111111 12333323778888887654  79999998765322211     11222334555555 6677


Q ss_pred             EEEeC--C-----CcEEEEECCCCe------EE--EEee-CCCCCEEEEEEeCCCCEEEEEeCC--------CcEEEEeC
Q psy14440        602 ASAGG--D-----GNVHMWDLSNGH------LL--TLLT-GHTDVVRALCFSRDGNILASSGQD--------CSVKLWDF  657 (711)
Q Consensus       602 asgs~--D-----g~I~iwDl~sg~------~i--~~l~-~h~~~V~sl~fspdg~~Lasgs~D--------g~V~iWdl  657 (711)
                      +.||.  +     +.+.+||+.+.+      -.  .... ...... +++...++++++.||.+        ..|.+||+
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~  633 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP  633 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence            77765  2     358899998776      21  2211 111111 23333347788888753        45888888


Q ss_pred             CCC
Q psy14440        658 AKL  660 (711)
Q Consensus       658 ~~~  660 (711)
                      .+.
T Consensus       634 ~t~  636 (695)
T 2zwa_A          634 LSE  636 (695)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            764

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=93.04  E-value=8.4  Score=39.47  Aligned_cols=187  Identities=10%  Similarity=0.086  Sum_probs=112.7

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeEE---------EEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC------
Q psy14440        470 PDRSLLLSCSQDNTIRLWSLLLWRCL---------VVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY------  534 (711)
Q Consensus       470 pdg~~L~s~s~Dg~V~iwdl~t~~~~---------~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~------  534 (711)
                      ++..++++.+.+|.|+--.+......         ..++. ...+..+........++..+..|.++-+....-      
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            45667888889999988876543221         11222 234445555555667888888898887765321      


Q ss_pred             ---cee---EEeecCCCCeeEEEEcC---CCCEEEEEEcCCcEEEEECCC-------CcEEEEeeCCCCCeEEEEEecCC
Q psy14440        535 ---HPL---RLFVGHYSDVDCVQFHP---NSNYVATGSSDRTIRLWDCVT-------GSHVRLLTGHKAPVYALSFSVCG  598 (711)
Q Consensus       535 ---~~~---~~~~~h~~~V~~v~~sp---~~~~latgs~Dg~I~iwD~~~-------~~~v~~~~~h~~~I~~la~spdg  598 (711)
                         .++   ..+. ....|.++....   +..+|+..+..|.++...+..       |.....+.. .+.+..+....++
T Consensus        85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~  162 (312)
T 1suu_A           85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD  162 (312)
T ss_dssp             ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred             CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence               110   0111 123344443332   467888999999999887642       222212222 4556666655556


Q ss_pred             CEEEEEeCCCcEEEEECCC---------CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        599 RFLASAGGDGNVHMWDLSN---------GHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       599 ~~Lasgs~Dg~I~iwDl~s---------g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      ..|+..+.+|.+..+....         |...-.+.. ...|.++....++..|++.+..|..+..++...
T Consensus       163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~  232 (312)
T 1suu_A          163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI  232 (312)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred             CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence            6788888999999887643         222222322 345666666556677888899999999988764

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.85  E-value=11  Score=41.86  Aligned_cols=188  Identities=15%  Similarity=0.216  Sum_probs=116.2

Q ss_pred             CCCEEEEEeC-CCeEEEEECCCCeEEEEEec-CCCCEEEEEEc--CCCCEEEEEEC-------CCeE---------EE--
Q psy14440        471 DRSLLLSCSQ-DNTIRLWSLLLWRCLVVYKG-HGHPVWDIKFS--PHGYYFASAGH-------DRMA---------RL--  528 (711)
Q Consensus       471 dg~~L~s~s~-Dg~V~iwdl~t~~~~~~~~~-h~~~V~~v~~s--p~g~~l~sgs~-------Dg~i---------~l--  528 (711)
                      ||++|+.-.. +..|...+++..++-..+.. ....+..+.|-  |+..|+++++.       ||..         .+  
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~  220 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN  220 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence            7888888774 56788899999998877764 35678888886  57778888874       2221         11  


Q ss_pred             -EECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCC---------------cEEEEECC-------CC-----c--E
Q psy14440        529 -WATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR---------------TIRLWDCV-------TG-----S--H  578 (711)
Q Consensus       529 -wd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg---------------~I~iwD~~-------~~-----~--~  578 (711)
                       .|.++.+....+. -.+....+...+++.+.++.|.+.               .|.++|+.       .|     .  -
T Consensus       221 ~iD~~tm~v~~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g  299 (638)
T 3sbq_A          221 AIDAETMEMAFQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK  299 (638)
T ss_dssp             EEETTTCSEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             EEcCCccEEEEEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence             1222222111111 122344555677788877766432               25555532       11     0  1


Q ss_pred             EEEeeCCC---------------CCeEEEEEecCCCEEEEEe-CCCcEEEEECCC------CeE-------EEEeeCCCC
Q psy14440        579 VRLLTGHK---------------APVYALSFSVCGRFLASAG-GDGNVHMWDLSN------GHL-------LTLLTGHTD  629 (711)
Q Consensus       579 v~~~~~h~---------------~~I~~la~spdg~~Lasgs-~Dg~I~iwDl~s------g~~-------i~~l~~h~~  629 (711)
                      +..+.+..               .....+.++|||+++++++ .+.+|.++|+.+      ++.       +.... -.-
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~Gl  378 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGL  378 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCS
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCC
Confidence            22332221               1223567899999988776 577999999874      221       33333 234


Q ss_pred             CEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy14440        630 VVRALCFSRDGNILASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       630 ~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~  660 (711)
                      .....+|.++|+...|.--|..|.-|++...
T Consensus       379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             cccEEEECCCCceEeeeeecceEEEEeccHH
Confidence            5678899999976666778999999999764

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.48  E-value=0.44  Score=48.48  Aligned_cols=183  Identities=16%  Similarity=0.043  Sum_probs=91.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEee
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFV  541 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~  541 (711)
                      .|..++...+. .++. . ||.|..|-......+-.-..-...|..|+...+  ..+.-+ ||.|+.|-....-.+-.-.
T Consensus        64 ~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~  137 (282)
T 3qhy_B           64 GVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPA  137 (282)
T ss_dssp             CCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred             CEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCc
Confidence            45555554332 2222 4 788888865432111100011235777766543  344445 9999999765432222111


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE
Q psy14440        542 GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLL  621 (711)
Q Consensus       542 ~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i  621 (711)
                      .....|..|+...+  +.+.-. ||.|..|-......+..-..-...|..++...+ ..++.  .||.|+.|-....-.+
T Consensus       138 ~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gql  211 (282)
T 3qhy_B          138 EAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQT  211 (282)
T ss_dssp             GGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTT
T ss_pred             cCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCC
Confidence            22345666665432  333334 799999976542211111111345777766433 23333  5899999965432111


Q ss_pred             EEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        622 TLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       622 ~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ..-......|..++...+. .++. . ||.|..|=...
T Consensus       212 g~p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n~  246 (282)
T 3qhy_B          212 TVPTEALSGVSAIASGEWY-SLAL-K-NGKVIAWGSSR  246 (282)
T ss_dssp             CCCGGGGSSCCEEEECSSC-EEEE-E-TTEEEEESTTC
T ss_pred             CCCcccCCCceEEEcCCCE-EEEE-E-CCEEEEecCCC
Confidence            1000111346666654333 3333 3 99999997654

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=90.81  E-value=27  Score=40.09  Aligned_cols=173  Identities=12%  Similarity=0.051  Sum_probs=91.6

Q ss_pred             CeEEEEECCCC--eEEEEEecCCCCE-EEEEEcCCCC-----EEEEEECC---CeEEEEECCC--CceeEEeecCCCCee
Q psy14440        482 NTIRLWSLLLW--RCLVVYKGHGHPV-WDIKFSPHGY-----YFASAGHD---RMARLWATDS--YHPLRLFVGHYSDVD  548 (711)
Q Consensus       482 g~V~iwdl~t~--~~~~~~~~h~~~V-~~v~~sp~g~-----~l~sgs~D---g~i~lwd~~~--~~~~~~~~~h~~~V~  548 (711)
                      ..|+.|.+-+.  +-...+.+....+ .++..+.++.     .+++.+.+   ..+.+.+.+.  +. +..+.... .. 
T Consensus       216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-~~-  292 (711)
T 4hvt_A          216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPS-DA-  292 (711)
T ss_dssp             CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCT-TC-
T ss_pred             CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCC-cc-
Confidence            56888887553  2344565544433 2344556655     24444422   3455556543  32 22222111 11 


Q ss_pred             EEEEcCCCCEEEEE----------EcCCcEEEEECCCC-------cEEEE-ee-CCCCCeEEEEEecCCCEEEEEeCCC-
Q psy14440        549 CVQFHPNSNYVATG----------SSDRTIRLWDCVTG-------SHVRL-LT-GHKAPVYALSFSVCGRFLASAGGDG-  608 (711)
Q Consensus       549 ~v~~sp~~~~latg----------s~Dg~I~iwD~~~~-------~~v~~-~~-~h~~~I~~la~spdg~~Lasgs~Dg-  608 (711)
                      .+..+.++.+++..          ...+.|.+.|+.++       ...+. +. .....+..++|..+ .++++...++ 
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~  371 (711)
T 4hvt_A          293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVV  371 (711)
T ss_dssp             EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTE
T ss_pred             eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCE
Confidence            22334455554422          24677999998764       22333 32 23446778888865 5666776676 


Q ss_pred             -cEEEEECCCCe-EEEE-eeCC-CCCEEEEEEeCCCC-EEEEEeC---CCcEEEEeCC
Q psy14440        609 -NVHMWDLSNGH-LLTL-LTGH-TDVVRALCFSRDGN-ILASSGQ---DCSVKLWDFA  658 (711)
Q Consensus       609 -~I~iwDl~sg~-~i~~-l~~h-~~~V~sl~fspdg~-~Lasgs~---Dg~V~iWdl~  658 (711)
                       .|.++|+.+|+ .+.. +... .+.+....+++++. ++++.+.   -+.+..+|+.
T Consensus       372 ~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          372 AKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             EEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence             57788877775 2233 2221 24576667767665 4555443   2567777765

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.71  E-value=3.1  Score=42.10  Aligned_cols=167  Identities=16%  Similarity=0.037  Sum_probs=84.5

Q ss_pred             CcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEE
Q psy14440        439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFA  518 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~  518 (711)
                      ++.++.|-....-....-..-...|..++...+.  .+.-. ||.|..|-......+-.-......|..++..... .++
T Consensus        80 ~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~-~~~  155 (282)
T 3qhy_B           80 DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-ALA  155 (282)
T ss_dssp             TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEE
T ss_pred             CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE-EEE
Confidence            7788888644321111001112467777775443  33334 8999999764321111111123456666654332 233


Q ss_pred             EEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCC
Q psy14440        519 SAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCG  598 (711)
Q Consensus       519 sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg  598 (711)
                       -. ||.+..|-......+..-......|..|+...+ ..++.  .||.|..|-......+-.-......|..|+...+.
T Consensus       156 -l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h  230 (282)
T 3qhy_B          156 -VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY  230 (282)
T ss_dssp             -EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC
T ss_pred             -EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE
Confidence             34 799999976643222111112345666665432 23444  59999999754432211111112356677654433


Q ss_pred             CEEEEEeCCCcEEEEECCC
Q psy14440        599 RFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       599 ~~Lasgs~Dg~I~iwDl~s  617 (711)
                       .++..  ||.|+.|-...
T Consensus       231 -~~al~--~g~v~~wG~n~  246 (282)
T 3qhy_B          231 -SLALK--NGKVIAWGSSR  246 (282)
T ss_dssp             -EEEEE--TTEEEEESTTC
T ss_pred             -EEEEE--CCEEEEecCCC
Confidence             33333  89999996544

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=88.80  E-value=25  Score=36.72  Aligned_cols=183  Identities=9%  Similarity=0.019  Sum_probs=90.7

Q ss_pred             cCCEEEEEEcC-CCCEEEEEeCCC----eEEEEEC--CCCeEEEE---Eec--------CCCCEEEEEEcCC--CCEEEE
Q psy14440        460 EGPVRKLSFSP-DRSLLLSCSQDN----TIRLWSL--LLWRCLVV---YKG--------HGHPVWDIKFSPH--GYYFAS  519 (711)
Q Consensus       460 ~~~V~~l~fsp-dg~~L~s~s~Dg----~V~iwdl--~t~~~~~~---~~~--------h~~~V~~v~~sp~--g~~l~s  519 (711)
                      ...|.+|++.+ +...|++++..|    .|...+-  .+++.+..   +..        +...|+++++.+.  ...+.+
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            34689999998 334455555444    3444321  23333221   110        1135788999862  445555


Q ss_pred             EECCCeEEEEECCCCceeEEeec-------------------CCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEE
Q psy14440        520 AGHDRMARLWATDSYHPLRLFVG-------------------HYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGSHV  579 (711)
Q Consensus       520 gs~Dg~i~lwd~~~~~~~~~~~~-------------------h~~~V~~v~~sp-~~~~latgs~Dg~I~iwD~~~~~~v  579 (711)
                      ++..+.|...+ +.++....+..                   ....+.+|.++| +...|+.+..++.|...+ ..|+..
T Consensus       134 g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW  211 (394)
T 3b7f_A          134 GTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDW  211 (394)
T ss_dssp             EEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSC
T ss_pred             EecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCc
Confidence            55556554432 33332222211                   123578999987 345555555455444432 233333


Q ss_pred             EEeeC-C------------CCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEeeC--CC---CCEEEEEEeC-C
Q psy14440        580 RLLTG-H------------KAPVYALSFSVC-GRFLASAGGDGNVHMWDLSNGHLLTLLTG--HT---DVVRALCFSR-D  639 (711)
Q Consensus       580 ~~~~~-h------------~~~I~~la~spd-g~~Lasgs~Dg~I~iwDl~sg~~i~~l~~--h~---~~V~sl~fsp-d  639 (711)
                      ..+.. -            ...+.+|+++++ ...|++++..| |...+ ..|+....+..  ..   ..+.++++++ +
T Consensus       212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~  289 (394)
T 3b7f_A          212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRD  289 (394)
T ss_dssp             EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred             eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCC
Confidence            33221 0            124889999885 45666666544 55444 23443333321  11   3456788875 3


Q ss_pred             CCEEEEE
Q psy14440        640 GNILASS  646 (711)
Q Consensus       640 g~~Lasg  646 (711)
                      ...|..+
T Consensus       290 ~~~l~~~  296 (394)
T 3b7f_A          290 PRTVWVF  296 (394)
T ss_dssp             TTCEEEE
T ss_pred             CCEEEEE
Confidence            3334444

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=85.59  E-value=31  Score=34.46  Aligned_cols=196  Identities=9%  Similarity=0.029  Sum_probs=111.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEE---ECCCCeEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCc--
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDNTIRLW---SLLLWRCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDRMARLWATDSYH--  535 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg~V~iw---dl~t~~~~~~~~~h~~~V~~v~~sp-~g~~l~sgs~Dg~i~lwd~~~~~--  535 (711)
                      .+..+.......+|+..+.+|.++--   ++........+. ....|..+.... +..+++..+.+|.++........  
T Consensus        25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~  103 (276)
T 3no0_A           25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYK  103 (276)
T ss_dssp             CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTC
T ss_pred             eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhh
Confidence            34444333344456566666655433   222111100122 345565554421 46799999999999999875432  


Q ss_pred             --eeE--EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-------CcEEEEee-CCCCCeEEEEEecCCCEEEE
Q psy14440        536 --PLR--LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT-------GSHVRLLT-GHKAPVYALSFSVCGRFLAS  603 (711)
Q Consensus       536 --~~~--~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~-------~~~v~~~~-~h~~~I~~la~spdg~~Las  603 (711)
                        -+.  .+. ....+..+....+...++..+..|.+..+....       +.-++.+. .....|.++....++.+++.
T Consensus       104 ~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~  182 (276)
T 3no0_A          104 AQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLV  182 (276)
T ss_dssp             STTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEE
T ss_pred             cCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEE
Confidence              111  122 223455555555666888899999988887532       11122221 12355666665566778889


Q ss_pred             EeCCCcEEEEECCC-------CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEE--EeCCCC
Q psy14440        604 AGGDGNVHMWDLSN-------GHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKL--WDFAKL  660 (711)
Q Consensus       604 gs~Dg~I~iwDl~s-------g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~i--Wdl~~~  660 (711)
                      .+..|.++...+..       ++-+..+ ...+.+..+....+...++..+.+|.+..  +++...
T Consensus       183 ~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i  247 (276)
T 3no0_A          183 ITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDI  247 (276)
T ss_dssp             EETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred             EeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHC
Confidence            99999999887632       2333333 23345555544444456777788888877  877543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=84.30  E-value=42  Score=34.90  Aligned_cols=172  Identities=12%  Similarity=0.021  Sum_probs=87.5

Q ss_pred             CEEEEEeCCCeEEEEECC----CCeEEEEEecCCCCEEEEEEcC--CCCEEEEEECCC----eEEEEECCCCceeEEeec
Q psy14440        473 SLLLSCSQDNTIRLWSLL----LWRCLVVYKGHGHPVWDIKFSP--HGYYFASAGHDR----MARLWATDSYHPLRLFVG  542 (711)
Q Consensus       473 ~~L~s~s~Dg~V~iwdl~----t~~~~~~~~~h~~~V~~v~~sp--~g~~l~sgs~Dg----~i~lwd~~~~~~~~~~~~  542 (711)
                      ..|++|+..| +.+++..    +++.... ......|.+|++.|  .+..++ ++..|    .|.. ..+.++.-..+..
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~-~~~~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~-s~D~G~tW~~~~~   98 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGP-VFLGHTIHHIVQDPREPERMLM-AARTGHLGPTVFR-SDDGGGNWTEATR   98 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEE-ESTTSEEEEEEECSSSTTCEEE-EEEC--CCEEEEE-ESSTTSCCEECSB
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCc-cCCCCceEEEEECCCCCCeEEE-EecCCCCCccEEE-eCCCCCCceECCc
Confidence            3677777776 5555432    3443321 12356799999998  444444 44444    3333 3333332222211


Q ss_pred             --------------CCCCeeEEEEcC-C-CCEEEEEEcCCcEEEEECCCCcEEEEeeC-------------------CCC
Q psy14440        543 --------------HYSDVDCVQFHP-N-SNYVATGSSDRTIRLWDCVTGSHVRLLTG-------------------HKA  587 (711)
Q Consensus       543 --------------h~~~V~~v~~sp-~-~~~latgs~Dg~I~iwD~~~~~~v~~~~~-------------------h~~  587 (711)
                                    ....|.++++.| + ...|.+++..+.|...+ ..|+....+..                   ...
T Consensus        99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~  177 (394)
T 3b7f_A           99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP  177 (394)
T ss_dssp             CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred             cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCC
Confidence                          112477888886 2 45666666566555443 23333333221                   123


Q ss_pred             CeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEeeC-----C--------CCCEEEEEEeCC-CCEEEEEeCCC
Q psy14440        588 PVYALSFSVC-GRFLASAGGDGNVHMWDLSNGHLLTLLTG-----H--------TDVVRALCFSRD-GNILASSGQDC  650 (711)
Q Consensus       588 ~I~~la~spd-g~~Lasgs~Dg~I~iwDl~sg~~i~~l~~-----h--------~~~V~sl~fspd-g~~Lasgs~Dg  650 (711)
                      .+.+|.+++. ...|+.+..++.|...+ ..|+....+..     +        ...+.+|+++++ ...|+.++..|
T Consensus       178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          178 KMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             EEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             ceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            5788999873 34455555445454443 22332222211     0        124889999885 35666666544

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=83.77  E-value=46  Score=34.95  Aligned_cols=164  Identities=9%  Similarity=0.067  Sum_probs=98.7

Q ss_pred             eEEEEECCCC--eEEEEEecC------CCCEEEEEEc---CC----CCE-EEEEECCCeEEEEECCCCceeEEeec----
Q psy14440        483 TIRLWSLLLW--RCLVVYKGH------GHPVWDIKFS---PH----GYY-FASAGHDRMARLWATDSYHPLRLFVG----  542 (711)
Q Consensus       483 ~V~iwdl~t~--~~~~~~~~h------~~~V~~v~~s---p~----g~~-l~sgs~Dg~i~lwd~~~~~~~~~~~~----  542 (711)
                      .|.+||+.+.  +.++.+.-.      .+.+.++.+.   +.    +.+ .++-+..+-|.++|+.+++..|....    
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5788899888  888877632      3457788877   22    223 33334577899999998877765521    


Q ss_pred             C--------------CCCeeEEEEcCC----CCEEEEEEcCCcEEEEECC-----CC---cEEEEee--CCCCCeEEEEE
Q psy14440        543 H--------------YSDVDCVQFHPN----SNYVATGSSDRTIRLWDCV-----TG---SHVRLLT--GHKAPVYALSF  594 (711)
Q Consensus       543 h--------------~~~V~~v~~sp~----~~~latgs~Dg~I~iwD~~-----~~---~~v~~~~--~h~~~I~~la~  594 (711)
                      .              ...|..|+++|+    ++.|..+...+. ++|.+.     ..   ..++.+-  +..+.-..+++
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~  282 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY  282 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence            0              236788888887    677776664442 333332     11   2222221  11233445677


Q ss_pred             e-cCCCEEEEEeCCCcEEEEECCC-----CeEEEEeeC-CCCCEEEEEEeCCCCEEEEEe
Q psy14440        595 S-VCGRFLASAGGDGNVHMWDLSN-----GHLLTLLTG-HTDVVRALCFSRDGNILASSG  647 (711)
Q Consensus       595 s-pdg~~Lasgs~Dg~I~iwDl~s-----g~~i~~l~~-h~~~V~sl~fspdg~~Lasgs  647 (711)
                      + .+|.++++--..+.|..|+..+     +........ .-..+.++.+..+|.+.+..+
T Consensus       283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred             eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence            5 6787777777888999999875     122222222 224577888777776555553

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=82.93  E-value=0.26  Score=52.84  Aligned_cols=6  Identities=17%  Similarity=0.146  Sum_probs=3.1

Q ss_pred             HHHhhc
Q psy14440        250 RHLQEK  255 (711)
Q Consensus       250 ~~l~~~  255 (711)
                      .||+++
T Consensus       175 ~~LH~~  180 (400)
T 1nxk_A          175 QYLHSI  180 (400)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            455554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	711
d2nxpa1	149	d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human	6e-55
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-50
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-36
d2j4ba1	131	d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Enceph	7e-48
d2j49a1	134	d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Sacch	1e-43
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-40
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-33
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-38
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-31
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-30
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-29
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-19
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-26
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-21
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-25
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-21
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-21
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-18
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-18
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-25
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-22
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-21
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-17
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-16
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-21
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-14
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-12
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-21
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-17
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-16
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-16
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-20
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-20
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-19
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-18
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-16
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-12
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-18
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-14
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-12
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-17
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-17
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-16
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-17
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-12
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-12
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-10
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-17
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-16
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-11
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-14
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-13
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-14
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-14
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-12
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-11
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-11
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	7e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.002
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-07
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	6e-04
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	6e-05
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	7e-04
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	4e-04
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	6e-04
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	0.002
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.002

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  182 bits (464), Expect = 6e-55
 Identities = 74/149 (49%), Positives = 107/149 (71%)

Query: 126 DSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYN 185
             ++  +LSAY  +GDP +YE+ Y  LK FIE SLD ++ EL  + YP+ VHMY+ELVYN
Sbjct: 1   QPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYN 60

Query: 186 GHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTL 245
            HE++A     K   D E +YQ+DLR LSS+TK++ ++ NE    FR+++F++R+SRD+ 
Sbjct: 61  QHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSY 120

Query: 246 SLLKRHLQEKKHTVLLNIVQEHLYFDMYE 274
            LLKRHLQEK++  + NIVQEHLY D+++
Sbjct: 121 QLLKRHLQEKQNNQIWNIVQEHLYIDIFD 149

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  176 bits (445), Expect = 3e-50
 Identities = 71/307 (23%), Positives = 127/307 (41%), Gaps = 31/307 (10%)

Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLK-----------AMKSSDQ 429
           Y L   R  VT        S++     ++ IK+W       +            +     
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 430 LQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
            + +     D+ +++ D +  E  RT+ GH+  V  +S  P+   ++S S+D TI++W +
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDC 549
               C+  + GH   V  ++ +  G   AS  +D+  R+W   +         H   V+C
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

Query: 550 VQFHPNSNYVA--------------------TGSSDRTIRLWDCVTGSHVRLLTGHKAPV 589
           + + P S+Y +                    +GS D+TI++WD  TG  +  L GH   V
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 590 YALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQD 649
             + F   G+F+ S   D  + +WD  N   +  L  H   V +L F +    + +   D
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 310

Query: 650 CSVKLWD 656
            +VK+W+
Sbjct: 311 QTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  135 bits (340), Expect = 9e-36
 Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 20/226 (8%)

Query: 454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH 513
             L GH  PV ++ F P  S+++S S+D TI++W           KGH   V DI F   
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 514 GYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDC 573
           G   AS   D   +LW    +  +R   GH  +V  V   PN +++ + S D+TI++W+ 
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 574 VTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRA 633
            TG  V+  TGH+  V  +  +  G  +AS   D  V +W ++       L  H  VV  
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

Query: 634 LCF--------------------SRDGNILASSGQDCSVKLWDFAK 659
           + +                     + G  L S  +D ++K+WD + 
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

 Score =  163 bits (413), Expect = 7e-48
 Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 1/131 (0%)

Query: 145 YEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEP 204
            E +Y  LK +IE+SLD++K +L  +LYP+ +H+Y +L+      +A E   K+  DH  
Sbjct: 2   METSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYN 61

Query: 205 HYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIV 264
              E++++  S+     I  N  A TF+++++ + M R    LL   L+E+  T +L I+
Sbjct: 62  K-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKIL 120

Query: 265 QEHLYFDMYEG 275
            +HL   +Y G
Sbjct: 121 NQHLDIKVYVG 131

>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} Length = 134

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  151 bits (383), Expect = 1e-43
 Identities = 39/133 (29%), Positives = 77/133 (57%), Gaps = 4/133 (3%)

Query: 142 PNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMD 201
           P  Y  AY  LK ++++SL++YK EL  ++YP+ +++++ LV     + A     +   D
Sbjct: 1   PENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVY-ARRFFDRFSPD 59

Query: 202 HEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKK---HT 258
            +  +  ++ +L SV   D I+ NE+A  F+S ++ I MS+ TL+LL   L E +    +
Sbjct: 60  FKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGS 119

Query: 259 VLLNIVQEHLYFD 271
           ++++++ +HL  +
Sbjct: 120 LIISVINQHLDPN 132

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  149 bits (376), Expect = 2e-40
 Identities = 68/332 (20%), Positives = 122/332 (36%), Gaps = 25/332 (7%)

Query: 350 KDSEKI-DKLKALREATKRVTLGP-----ESLPSIAC---YTLLNARQQVTCAEISEDVS 400
           +++E++ ++++  R+A    TL       + +  I      TL     ++       D  
Sbjct: 9   QEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSR 68

Query: 401 ILAVG-----------FSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERN 449
           +L              ++ + +    L    +     +     +     D +  I + + 
Sbjct: 69  LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128

Query: 450 AETTRTLVGHEG---PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVW 506
            E    +                 D + +++ S D T  LW +   +    + GH   V 
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188

Query: 507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR 566
            +  +P    F S   D  A+LW        + F GH SD++ + F PN N  ATGS D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248

Query: 567 TIRL--WDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLL 624
           T RL                    + ++SFS  GR L +   D N ++WD        +L
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

Query: 625 TGHTDVVRALCFSRDGNILASSGQDCSVKLWD 656
            GH + V  L  + DG  +A+   D  +K+W+
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  129 bits (324), Expect = 2e-33
 Identities = 52/292 (17%), Positives = 94/292 (32%), Gaps = 54/292 (18%)

Query: 422 KAMKSSDQLQDIEMECDDILVRIMDER-------NAETTRTLVGHEGPVRKLSFSPDRSL 474
           +A +  +Q++D    C D  +  +             T RTL GH   +  + +  D  L
Sbjct: 10  EAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRL 69

Query: 475 LLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP---------------------- 512
           L+S SQD  + +W       +         V    ++P                      
Sbjct: 70  LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129

Query: 513 -----------------------HGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDC 549
                                        ++  D    LW  ++      F GH  DV  
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189

Query: 550 VQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGN 609
           +   P++    +G+ D + +LWD   G   +  TGH++ + A+ F   G   A+   D  
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249

Query: 610 V--HMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK 659
                       +          + ++ FS+ G +L +   D +  +WD  K
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  143 bits (359), Expect = 9e-38
 Identities = 77/388 (19%), Positives = 133/388 (34%), Gaps = 86/388 (22%)

Query: 345 PLPP-LKDSEKIDKLKALREAT-KRVTLGPESLPS---IACYTLLNARQQVTCAEISEDV 399
           P+PP L D +      AL++ T     L   +LP    +  +  L+    V C + S D 
Sbjct: 15  PIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG 74

Query: 400 SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGH 459
             LA G      +++ +    L A  S D   + + E                T +    
Sbjct: 75  EYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPEN-------------LNTSSSPSS 120

Query: 460 EGPVRKLSFSPDRSLLLSCS---------------------------------------- 479
           +  +R + FSPD   L + +                                        
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180

Query: 480 --QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS---- 533
              D T+R+W L   +C +                 G Y A+   DR  R+W +++    
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

Query: 534 ---YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS------------H 578
                      GH   V  V F  +   V +GS DR+++LW+    +             
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300

Query: 579 VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALC--- 635
                GHK  V +++ +    ++ S   D  V  WD  +G+ L +L GH + V ++    
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360

Query: 636 ---FSRDGNILASSGQDCSVKLWDFAKL 660
                 + N+ A+   DC  ++W + K+
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 8/81 (9%)

Query: 585 HKAPVYALSFSVCGR---FLASAGGDGNVHMWDLSNGHLLTL----LTGHTDVVRALCFS 637
           H  P+      +  +          +    +++ +    + +       HT VV  + FS
Sbjct: 12  HSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS 71

Query: 638 RDGNILASSGQDCSVKLWDFA 658
            DG  LA+ G + + +++  +
Sbjct: 72  NDGEYLAT-GCNKTTQVYRVS 91

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (307), Expect = 3e-31
 Identities = 52/233 (22%), Positives = 95/233 (40%), Gaps = 16/233 (6%)

Query: 435 MECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC 494
               D  +R+ D    +    L+GH   VR      D   ++S + D  +++W      C
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETC 169

Query: 495 LVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP 554
           L   +GH + V+ ++F   G +  S   D   R+W  ++ + +    GH S    ++   
Sbjct: 170 LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 227

Query: 555 NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPV-YALSFSVCGRFLASAGGDGNVHMW 613
             N + +G++D T+++WD  TG  ++ L G                F+ ++  DG V +W
Sbjct: 228 --NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285

Query: 614 DLSNGHLLTLLT-----GHTDVVRALCFSRDGNILASSGQD----CSVKLWDF 657
           DL  G  +  L      G   VV  +  S    + A   ++      + + DF
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 8e-30
 Identities = 61/250 (24%), Positives = 100/250 (40%), Gaps = 45/250 (18%)

Query: 446 DERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV 505
                ++ + L GH+  V         + ++S S DNT+++WS +  +CL    GH   V
Sbjct: 2   RRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60

Query: 506 WDIKFSP--------------------------------------HGYYFASAGHDRMAR 527
           W  +                                         H     S   D   R
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120

Query: 528 LWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKA 587
           +W  ++   L + +GH + V CVQ+      V +G+ D  +++WD  T + +  L GH  
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGR--RVVSGAYDFMVKVWDPETETCLHTLQGHTN 178

Query: 588 PVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSG 647
            VY+L F   G  + S   D ++ +WD+  G+ +  LTGH  +   +      NIL S  
Sbjct: 179 RVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN 234

Query: 648 QDCSVKLWDF 657
            D +VK+WD 
Sbjct: 235 ADSTVKIWDI 244

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (289), Expect = 8e-29
 Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 14/196 (7%)

Query: 431 QDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL 490
           + +     D +V++ D        TL GH   V  L F  D   ++S S D +IR+W + 
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE 205

Query: 491 LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCV 550
              C+    GH      ++   +     S   D   ++W   +   L+   G       V
Sbjct: 206 TGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 263

Query: 551 QFHP-NSNYVATGSSDRTIRLWDCVTGSHVRLLT-----GHKAPVYALSFSVCGRFLASA 604
                N N+V T S D T++LWD  TG  +R L      G    V+ +  S      A  
Sbjct: 264 TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 323

Query: 605 GGDGN----VHMWDLS 616
             +G     + + D  
Sbjct: 324 SRNGTEETKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (217), Expect = 2e-19
 Identities = 55/209 (26%), Positives = 73/209 (34%), Gaps = 43/209 (20%)

Query: 487 WSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSD 546
           W     +   V KGH   V        G    S   D   ++W+  +   LR  VGH   
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 547 VDCVQFHPN--------------------------------------SNYVATGSSDRTI 568
           V   Q   N                                         V +GS D T+
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119

Query: 569 RLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHT 628
           R+WD  TG  + +L GH A V        GR + S   D  V +WD      L  L GHT
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177

Query: 629 DVVRALCFSRDGNILASSGQDCSVKLWDF 657
           + V +L F  DG  + S   D S+++WD 
Sbjct: 178 NRVYSLQF--DGIHVVSGSLDTSIRVWDV 204

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 2e-09
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 613 WDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
           W         +L GH D V   C    GN + S   D ++K+W   
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAV 45

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 6e-26
 Identities = 69/303 (22%), Positives = 114/303 (37%), Gaps = 27/303 (8%)

Query: 371 GPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKS---- 426
           G  SL  I C +     + V C  +  D   +  G  ++ IK+W     + K + +    
Sbjct: 1   GRHSLQRIHCRS--ETSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG 56

Query: 427 ---SDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNT 483
                Q  +  +        +                     L    +  ++++CS+D +
Sbjct: 57  SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS 116

Query: 484 IRLWSLLLWRCL-VVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG 542
           I +W +     + +     GH            Y  SA  DR  ++W T +   +R   G
Sbjct: 117 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 176

Query: 543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLA 602
           H   + C+Q+      V +GSSD TIRLWD   G+ +R+L GH+  V         + + 
Sbjct: 177 HKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIV 232

Query: 603 SAGGDGNVHMWDLSNG---------HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVK 653
           S   DG + +WDL              L  L  H+  V  L F  D   + SS  D ++ 
Sbjct: 233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTIL 290

Query: 654 LWD 656
           +WD
Sbjct: 291 IWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.4 bits (230), Expect = 1e-21
 Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 12/208 (5%)

Query: 454 RTLVGHEGPVRK-LSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP 512
           + +       +       D   ++S  +DNTI++W      C  +  GH   V  +++  
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 513 HGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWD 572
                 S+          T       +                           +I +WD
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDR----SIAVWD 121

Query: 573 CVTGSHV---RLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTD 629
             + + +   R+L GH+A V  + F        SA GD  + +W+ S    +  L GH  
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIV--SASGDRTIKVWNTSTCEFVRTLNGHKR 179

Query: 630 VVRALCFSRDGNILASSGQDCSVKLWDF 657
            +   C      ++ S   D +++LWD 
Sbjct: 180 GIA--CLQYRDRLVVSGSSDNTIRLWDI 205

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 619 HLLTLLTGHTDVVRA-LCFSRDGNILASSGQDCSVKLWDFAKLS 661
           H L  +   ++  +   C   D   + S  +D ++K+WD   L 
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE 46

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  107 bits (266), Expect = 1e-25
 Identities = 48/292 (16%), Positives = 98/292 (33%), Gaps = 54/292 (18%)

Query: 390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERN 449
           ++C   ++D + +A+  +   + ++     K                             
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------------------- 41

Query: 450 AETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCL--VVYKGHGHPVWD 507
                 L  H G V  + ++PD + +++C  D    +W+L        +V          
Sbjct: 42  -VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC 100

Query: 508 IKFSPHGYYFASAGHDRMARLW----ATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS 563
           ++++P+   FA     R+  +       D +    +     S V  + +HPNS  +A GS
Sbjct: 101 VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160

Query: 564 SDRTIRLWDCVTGSHVRL------------------LTGHKAPVYALSFSVCGRFLASAG 605
            D   R++                             +     V+ + FS  G  +A   
Sbjct: 161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 220

Query: 606 GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF 657
            D  V + D      +  L   T  + A+ F  + +++A +G DC   L+ +
Sbjct: 221 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVA-AGHDCFPVLFTY 271

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.0 bits (229), Expect = 6e-21
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 26/220 (11%)

Query: 462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLL--LWRCLVVYKGHGHPVWDIKFSPHGYYFAS 519
           P+   +++ DR+ +  C  ++ + ++      W  +   K H   V  + ++P      +
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 520 AGHDRMARLWATDSYHPLRLFVGH--YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS 577
            G DR A +W           V         CV++ PN    A GS  R I +      +
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 578 ----HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNG--------------- 618
                  +    ++ V +L +      LA+   D    ++                    
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188

Query: 619 ---HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLW 655
               L+   +     V  +CFS +G+ +A    D +V L 
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 228

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.6 bits (228), Expect = 9e-21
 Identities = 48/323 (14%), Positives = 83/323 (25%), Gaps = 41/323 (12%)

Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDD- 439
           + L     QVT  + + D + +    ++    +W+L  +  K      ++          
Sbjct: 45  HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 104

Query: 440 ----------------ILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNT 483
                           I     +                V  L + P+  LL + S D  
Sbjct: 105 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164

Query: 484 IRLWSL------------------LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRM 525
            R++S                        +         V  + FS +G   A   HD  
Sbjct: 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 224

Query: 526 ARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH 585
             L   D    +         +  V F   S+ VA G  D    L+   + +      G 
Sbjct: 225 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGR 283

Query: 586 KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNI--- 642
                  S             D        S      L + H + V  +     G     
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCS 342

Query: 643 -LASSGQDCSVKLWDFAKLSDEV 664
              ++G D  + +WD   L   +
Sbjct: 343 QFCTTGMDGGMSIWDVRSLESAL 365

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.3 bits (209), Expect = 2e-18
 Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 583 TGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGH--LLTLLTGHTDVVRALCFSRDG 640
           +    P+   +++     +A    +  VH+++ S      +  L  H   V  + ++ D 
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 641 NILASSGQDCSVKLWDF 657
           N + + G D +  +W  
Sbjct: 64  NRIVTCGTDRNAYVWTL 80

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.1 bits (206), Expect = 6e-18
 Identities = 12/84 (14%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 533 SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRL--LTGHKAPVY 590
           +YH           + C  ++ +   +A   ++  + +++      V++  L  H   V 
Sbjct: 1   AYHSF-----LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT 55

Query: 591 ALSFSVCGRFLASAGGDGNVHMWD 614
            + ++     + + G D N ++W 
Sbjct: 56  GVDWAPDSNRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 3/34 (8%), Positives = 15/34 (44%)

Query: 625 TGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
           +   + +    +++D   +A    +  V +++ +
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKS 37

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (258), Expect = 8e-25
 Identities = 44/333 (13%), Positives = 87/333 (26%), Gaps = 74/333 (22%)

Query: 368 VTLGPESLPSIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSS 427
             +GP           LN  + V    IS     +  G  +  +K+W             
Sbjct: 32  ALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTG-GKGCVKVWD------------ 78

Query: 428 DQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLW 487
                         +     ++  +    +  +  +R     PD   L+   + +T+ +W
Sbjct: 79  --------------ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124

Query: 488 SLLLWRCLVVYKGHGHP------------------------------------------- 504
            L      +  +                                                
Sbjct: 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 184

Query: 505 -VWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS 563
               I  S  G    + G D   R                 S +  + + P   ++A G 
Sbjct: 185 GASCIDISNDGTKLWTGGLDNTVR-SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM 243

Query: 564 SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTL 623
               +     V       L  H++ V +L F+ CG++  S G D  ++ W    G  +  
Sbjct: 244 ESSNVE-VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302

Query: 624 LTGHTDVVRALCFSRDGNILASSGQDCSVKLWD 656
               +  V +   S D   + +   D    +++
Sbjct: 303 S-KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.0 bits (237), Expect = 4e-22
 Identities = 35/251 (13%), Positives = 73/251 (29%), Gaps = 16/251 (6%)

Query: 378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMEC 437
           ++    LN    +   ++  D   L VG   S + +W L     +               
Sbjct: 88  VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147

Query: 438 DDILVRIMDERNAETTRTLVGHEGPVRKLSF-------------SPDRSLLLSCSQDNTI 484
                  +           V        +               S D + L +   DNT+
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207

Query: 485 RLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHY 544
           R W L   R  +        ++ + + P G + A         +   +          H 
Sbjct: 208 RSWDLREGRQ-LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHE 265

Query: 545 SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASA 604
           S V  ++F     +  +   D  +  W    G+ +       + V +   SV  +++ + 
Sbjct: 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTG 324

Query: 605 GGDGNVHMWDL 615
            GD    ++++
Sbjct: 325 SGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 1e-10
 Identities = 13/117 (11%), Positives = 32/117 (27%), Gaps = 6/117 (5%)

Query: 462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG 521
           P      + D  +       + +    +      +    HG  V  +  S    +  + G
Sbjct: 11  PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG 70

Query: 522 HDRMARLWATDSYHPLRL-----FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDC 573
                ++W                +   + +   +  P+   +  G    T+ +WD 
Sbjct: 71  -KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 1/54 (1%)

Query: 437 CDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL 490
             D L+         +          V     S D   +++ S D    ++ ++
Sbjct: 284 GKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 585 HKAPVYALSFSVCGRFLA-SAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNIL 643
              P Y+   +  G+        D  +      +   +  L  H +VV A+  S     +
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHV 66

Query: 644 ASSGQDCSVKLWDFAKLSDEVGTEEVNL-SHSADI 677
            + G+ C VK+WD +   ++    +++  +    I
Sbjct: 67  YTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYI 100

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 94.2 bits (232), Expect = 2e-21
 Identities = 19/243 (7%), Positives = 48/243 (19%), Gaps = 19/243 (7%)

Query: 435 MECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC 494
           ++ +     +++             +         P +           I ++ +   + 
Sbjct: 112 VDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 171

Query: 495 LVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY-------HPLRLFVGHYSDV 547
                      +   F           +  +                    +        
Sbjct: 172 -FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSP 230

Query: 548 DCVQFHPNSNYVATGSSDRTIRLWDCV-------TGSHVRLLTGHKAPVYALSFSVCGRF 600
           +  +  P S     G  D                    +  L                 +
Sbjct: 231 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY 290

Query: 601 LASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL 660
              A   G +  +D+    +    T   + +  L  S D   +     D  +  +   K 
Sbjct: 291 YQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346

Query: 661 SDE 663
            DE
Sbjct: 347 EDE 349

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 80.7 bits (197), Expect = 6e-17
 Identities = 24/255 (9%), Positives = 63/255 (24%), Gaps = 23/255 (9%)

Query: 442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQD--NTIRLWSLLLWRCLVVYK 499
             I D       +  V     +R +    D  +         + + ++          ++
Sbjct: 26  AFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYD-YRTGKAEKFE 82

Query: 500 GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYV 559
            +   V+ +    +G +   A           ++  P  +     + +       NS ++
Sbjct: 83  ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFI 142

Query: 560 A----------TGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGN 609
           A           G   + I ++D          T   +  YA +F    + L        
Sbjct: 143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSL 201

Query: 610 VHMWDLSNG-------HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSD 662
               D               ++                    +   D +      + ++ 
Sbjct: 202 DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV 261

Query: 663 EVGTEEVNLSHSADI 677
           + G   + +   + I
Sbjct: 262 DPGDYRMIIPLESSI 276

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 77.2 bits (188), Expect = 9e-16
 Identities = 15/158 (9%), Positives = 34/158 (21%), Gaps = 11/158 (6%)

Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLW------ 492
           D +V             +    G        P      +   D                 
Sbjct: 206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD 265

Query: 493 -RCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQ 551
            R ++  +                Y+  A    +   +   +    R      +++  ++
Sbjct: 266 YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLR 321

Query: 552 FHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPV 589
              +   V     D  I  +        R +   K P+
Sbjct: 322 LSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 58.0 bits (138), Expect = 1e-09
 Identities = 28/201 (13%), Positives = 51/201 (25%), Gaps = 14/201 (6%)

Query: 467 SFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMA 526
            FSP    L++        +  +      V+       +  ++           G     
Sbjct: 9   DFSPLDGDLIAFVSRGQAFIQDV--SGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGD 66

Query: 527 RLWATD-SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH 585
            L   D        F  +  +V  +    N  +    +    I   D  TG    +    
Sbjct: 67  FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR 126

Query: 586 KAPVYALSFSVCGRFLA----------SAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALC 635
           +A +   + S   RF+A                 +H++D+     +   T       A  
Sbjct: 127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPA 185

Query: 636 FSRDGNILASSGQDCSVKLWD 656
           F  D   L            D
Sbjct: 186 FDADSKNLYYLSYRSLDPSPD 206

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.5 bits (116), Expect = 7e-07
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 589 VYALSFSVC-GRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSG 647
            +A  FS   G  +A     G   + D+S  ++L +       +R +    D  +    G
Sbjct: 5   KFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHG 61

Query: 648 QD--CSVKLWDFA 658
                 + ++D+ 
Sbjct: 62  TREGDFLGIYDYR 74

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 4/67 (5%)

Query: 423 AMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDN 482
                +     +   +  ++   D      TR +   +  +  L  S DR  ++    D 
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDV----KTRKVTEVKNNLTDLRLSADRKTVMVRKDDG 336

Query: 483 TIRLWSL 489
            I  + L
Sbjct: 337 KIYTFPL 343

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 93.0 bits (229), Expect = 3e-21
 Identities = 39/275 (14%), Positives = 73/275 (26%), Gaps = 55/275 (20%)

Query: 437 CDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLW--SLLLWRC 494
           C+   V  +   +   T     H         SP      S      +R+W  +      
Sbjct: 35  CNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94

Query: 495 LVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDV------- 547
                    PV DI +       A+ G  R                              
Sbjct: 95  KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF 154

Query: 548 --------------------------------------DCVQFHPNSNYVATGSSDRTIR 569
                                                   V+++P+ +  A+   D TI 
Sbjct: 155 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 214

Query: 570 LWDCVTGSHVRL-------LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLT 622
           L++ V G+   +          H   V+ L++S  G  +ASA  D  + +W+++   +  
Sbjct: 215 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 274

Query: 623 LLTGHTDV-VRALCFSRDGNILASSGQDCSVKLWD 656
            +   T +  + L        L S   +  +   +
Sbjct: 275 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 72.6 bits (176), Expect = 2e-14
 Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 492 WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS-------YHPLRLFVGHY 544
           ++    +  H   V  ++++P G  FAS G D    L+                  V H 
Sbjct: 179 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 238

Query: 545 SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGH-KAPVYALSFSVCGRFLAS 603
             V  + + P+   +A+ S+D+TI++W+  T    + +    +     L      + L S
Sbjct: 239 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 298

Query: 604 AGGDGNVHMWDL 615
              +G ++  + 
Sbjct: 299 ISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 64.5 bits (155), Expect = 8e-12
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG 608
            +   P  + +   +   ++      + +   + T H         S  G + AS    G
Sbjct: 22  VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHG 80

Query: 609 NVHMWDLSNGH 619
           NV +WD +   
Sbjct: 81  NVRIWDTTQTT 91

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.6 bits (150), Expect = 3e-11
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 589 VYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ 648
              L  +  G  +    G  +V+   + +     + T H+        S  G   AS   
Sbjct: 20  AVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 649 DCSVKLWDF 657
             +V++WD 
Sbjct: 79  HGNVRIWDT 87

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.8 bits (231), Expect = 3e-21
 Identities = 41/225 (18%), Positives = 77/225 (34%), Gaps = 23/225 (10%)

Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
           TL GH   V       + + +++ + D  IR++  +  + L+   GH   VW +K++  G
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 515 YYF-ASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDC 573
                S                 +            +  + N  Y+ TGS D T+ +W  
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 574 VTGSHVRLLTGHKAPVYALSFSVC---------------------GRFLASAGGDGNVHM 612
              S V                                       G  + S   D  + +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185

Query: 613 WDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF 657
           WD++    L +L+GHTD + +  +  +     S+  D ++++WD 
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.7 bits (197), Expect = 7e-17
 Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 6/183 (3%)

Query: 435 MECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC 494
               D  + + D    +    L GH   +    +  +R   +S S D TIR+W L     
Sbjct: 176 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 235

Query: 495 LVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP 554
           +   +GH   V  ++ S      A+A            S      F  H++++  +    
Sbjct: 236 MYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK----FSYHHTNLSAITTFY 291

Query: 555 NSNYVATGSSDRTIRLWDCVTGSHVR-LLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW 613
            S+ +    S+    +++  +G  V   +      +++++F      +A+   DG   + 
Sbjct: 292 VSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 350

Query: 614 DLS 616
            L 
Sbjct: 351 ILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.9 bits (195), Expect = 1e-16
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 3/130 (2%)

Query: 534 YHPLRL-FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL 592
           + P R    GH + V         NYV TG+ D+ IR++D +    +  L+GH   V+AL
Sbjct: 1   FVPQRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL 59

Query: 593 SFSVCGRFL-ASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCS 651
            ++  G  +  S      V          +      T     +   ++   + +  +D +
Sbjct: 60  KYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119

Query: 652 VKLWDFAKLS 661
           + +W   K S
Sbjct: 120 LHVWKLPKES 129

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.2 bits (193), Expect = 2e-16
 Identities = 48/258 (18%), Positives = 95/258 (36%), Gaps = 18/258 (6%)

Query: 403 AVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGP 462
             G  ++ + +W L             + D   E D  LV    E N      L GH   
Sbjct: 112 VTGSRDNTLHVWKL--------PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 163

Query: 463 VRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH 522
           VR +S   +  +++S S DNT+ +W +   +CL +  GH   ++   +        SA  
Sbjct: 164 VRTVSGHGN--IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM 221

Query: 523 DRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLL 582
           D   R+W  ++   +    GH + V  ++        A           +  +       
Sbjct: 222 DTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY-- 279

Query: 583 TGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLL-TLLTGHTDVVRALCFSRDGN 641
             H   + A++       +  +G +   ++++L +G L+   +    D + ++ F     
Sbjct: 280 --HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT- 336

Query: 642 ILASSGQDCSVKLW--DF 657
           ++A+  +D    L   DF
Sbjct: 337 LVAAVEKDGQSFLEILDF 354

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (156), Expect = 8e-12
 Identities = 56/283 (19%), Positives = 96/283 (33%), Gaps = 64/283 (22%)

Query: 437 CDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV 496
            DD ++R+ D  N +    L GH+G V  L ++    +L+S S D T+R+W +    C  
Sbjct: 30  ADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTH 88

Query: 497 VYKGHGHPVWDIKFSPHGY--YFASAGHDRMARLWATDS--------------------- 533
           V++GH   V  +    +    Y  +   D    +W                         
Sbjct: 89  VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 148

Query: 534 YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALS 593
            +P  + V             + N V +GS D T+ +WD      + +L+GH   +Y+  
Sbjct: 149 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 208

Query: 594 FSVCGRFLASAGGDGNVHMWDLSNG----------------------------------- 618
           +    +   SA  D  + +WDL NG                                   
Sbjct: 209 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 268

Query: 619 ----HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF 657
               +       HT++     F    NIL  SG +    +++ 
Sbjct: 269 DANDYSRKFSYHHTNLSAITTFYVSDNILV-SGSENQFNIYNL 310

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.6 bits (228), Expect = 1e-20
 Identities = 35/222 (15%), Positives = 64/222 (28%), Gaps = 30/222 (13%)

Query: 452 TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWS------LLLWRCLVVYKGHGHPV 505
           T  + +        +  S    L+ +   + T+++        L  +        + + +
Sbjct: 176 TVESPMTPSQFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234

Query: 506 WDIKFSPHGYYFASAGHDRMARLW----------------ATDSYHPLRLFVGHYSDVDC 549
             +KFSP G   A A                          T S         H S V  
Sbjct: 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294

Query: 550 VQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVY----ALSFSVCGRFLASAG 605
           + F+ +   + +   D  +R WD  T   +  L  H   +      L+    G  LA  G
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

Query: 606 GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSG 647
                 +  L  G    +     + +  +C  R       +G
Sbjct: 355 VFD---VKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 393

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.6 bits (228), Expect = 1e-20
 Identities = 46/328 (14%), Positives = 92/328 (28%), Gaps = 67/328 (20%)

Query: 396 SEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRT 455
           + ++ ++A       +  + +                     +D   +++ E+       
Sbjct: 76  AFELCLVATTSFSGDLLFYRI-------------------TREDETKKVIFEKLDLLDSD 116

Query: 456 LVGHEGPVRKLSFSPDR---SLLLSCSQDNTIRLWSLL------------------LWRC 494
           +  H     K   S DR     L++     T  +W                     L   
Sbjct: 117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 176

Query: 495 LVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA------TDSYHPLRLFVGHYSDVD 548
           +            +  S  G   A+  ++   ++          ++      + + + + 
Sbjct: 177 VESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235

Query: 549 CVQFHPNSNYVATGSSDRTI---RLWDC-------------VTGSHVRLLTGHKAPVYAL 592
            V+F P  + +A      +     L++               +         H + V +L
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295

Query: 593 SFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVR----ALCFSRDGNILASSGQ 648
           SF+  G  L SAG DG +  WD+     +T L  H D +      L     G+ LA  G 
Sbjct: 296 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 355

Query: 649 DCSVKLWDFAKLSDEVGTEEVNLSHSAD 676
                L    +        E       D
Sbjct: 356 FDVKFLKKGWRSGMGADLNESLCCVCLD 383

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.0 bits (216), Expect = 3e-19
 Identities = 25/240 (10%), Positives = 60/240 (25%), Gaps = 67/240 (27%)

Query: 452 TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFS 511
           T      H+  +  +S        +SCS D  +++W   L                    
Sbjct: 6   TANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNE---------------- 47

Query: 512 PHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQF-HPNSNYVATGSSDRTIRL 570
                              + S+   +  + H   +  ++        VAT S    +  
Sbjct: 48  --------------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 93

Query: 571 WDCVTGSHVRLLTG----------HKAPVYALSFSVCG-----RFLASAGGDGNVHMWDL 615
           +        + +             K   +AL +           L +    G  ++W  
Sbjct: 94  YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 153

Query: 616 SNG------------------HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF 657
                                  +      +    ++  S  G ++A+   + +V++ + 
Sbjct: 154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISEL 212

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.8 bits (205), Expect = 9e-18
 Identities = 26/197 (13%), Positives = 64/197 (32%), Gaps = 35/197 (17%)

Query: 542 GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS------HVRLLTGHKAPVYALSFS 595
            H +D+  V    +  +  + S D  +++WD                  HK+ ++ +   
Sbjct: 12  AHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 596 VC-------GRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDV----------VRALCFSR 638
                       +A+    G++  + ++       +                  AL +  
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 639 DGN-----ILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKA 693
             +      L ++    +  +W F   +DE  +  +N S + +++ +     V S  T +
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT-----VESPMTPS 184

Query: 694 SPLLHLIFSRRNILLRG 710
                +  S R ++  G
Sbjct: 185 QFATSVDISERGLIATG 201

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.3 bits (196), Expect = 1e-16
 Identities = 36/316 (11%), Positives = 82/316 (25%), Gaps = 78/316 (24%)

Query: 438 DDILVRIMD------ERNAETTRTLVGHEGPVRKLSF-------SPDRSLLLSCSQDNTI 484
            D  +++ D      E   + + +   H+  +  +         + +  L+ + S    +
Sbjct: 32  GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 91

Query: 485 RLWSLLLWRCLVVYKG----------HGHPVWDIKFSPHGY-----YFASAGHDRMARLW 529
             + +                       H  W +K+             +        +W
Sbjct: 92  LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 151

Query: 530 ATDSYHP------------------LRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLW 571
               +                    +   +        V        +ATG ++ T+++ 
Sbjct: 152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER-GLIATGFNNGTVQIS 210

Query: 572 D------CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW------------ 613
           +               +  +   + ++ FS  G  LA A    +                
Sbjct: 211 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 270

Query: 614 ----DLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKL--------- 660
                  +         H+  V +L F+  G  L S+G D  ++ WD             
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 330

Query: 661 SDEVGTEEVNLSHSAD 676
            D++  EE  L+    
Sbjct: 331 CDDIEIEEDILAVDEH 346

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.4 bits (160), Expect = 4e-12
 Identities = 29/219 (13%), Positives = 54/219 (24%), Gaps = 53/219 (24%)

Query: 390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMK------------------------ 425
            T  +ISE   ++A GF+   +++  L   +                             
Sbjct: 187 ATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245

Query: 426 ----SSDQLQDIEMECDD-----ILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLL 476
                           +      I    +   +++ +     H   V  LSF+     L 
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305

Query: 477 SCSQDNTIRLWSLLLWRCLVVYKGHGHPV----WDIKFSPHGYYFASAGHDRMARLWATD 532
           S   D  +R W +     +     H   +      +    HG   A  G   +  L    
Sbjct: 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK--- 362

Query: 533 SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLW 571
                                  +  +     DR+IR +
Sbjct: 363 ------------KGWRSGMGADLNESLCCVCLDRSIRWF 389

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.0 bits (203), Expect = 7e-18
 Identities = 35/287 (12%), Positives = 74/287 (25%), Gaps = 68/287 (23%)

Query: 438 DDILVRIMDERNAET--TRTLVGHEG-PVRKLSFSPDRS--LLLSCSQDNTIRLWSL--- 489
               VR +D+ +++        GH    V  + FSP +    L S  +   + +W     
Sbjct: 38  KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97

Query: 490 -----LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH--DRMARLWATDSYHPLRLFVG 542
                +       ++    P+ DI +   G      G   D      + DS + L    G
Sbjct: 98  KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG 157

Query: 543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT----GHKAPVYALSFSVC- 597
           H   ++      +    +    D    ++                   + V  + FS   
Sbjct: 158 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS 217

Query: 598 ---------------------------------------------GRFLASAGGDGNVHM 612
                                                         +  A+ G D  + +
Sbjct: 218 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV 277

Query: 613 WDLSNGHLLTLLTGHTDVVRAL---CFSRDGNILASSGQDCSVKLWD 656
           WD++    +   T     +        +     + S   D ++  ++
Sbjct: 278 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.0 bits (177), Expect = 2e-14
 Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 7/145 (4%)

Query: 478 CSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLW----ATDS 533
                  +            +   G  V D++FSP    F                + + 
Sbjct: 181 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF 240

Query: 534 YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALS 593
              +                 +S   AT  +D TIR+WD  T   V+  T  K  +    
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300

Query: 594 FSVC---GRFLASAGGDGNVHMWDL 615
             V       + S   DG ++ ++L
Sbjct: 301 VGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.7 bits (158), Expect = 4e-12
 Identities = 34/265 (12%), Positives = 63/265 (23%), Gaps = 66/265 (24%)

Query: 461 GPVRKLSFSPDRSLLLSCSQDNT-IRLWSL--LLWRCLVVYKGHGH-PVWDIKFSPH--G 514
                LS+ P  + +      +  +R           +V + GHG   V  +KFSP    
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 515 YYFASAGHDRMARLWATDS--------YHPLRLFVGHYSDVDCVQFHPNSNYVA--TGSS 564
            Y  S        +W             +    F      +  + +      +       
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137

Query: 565 DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL---- 620
           D         +G+ +  ++GH   + A          +   GD    ++           
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197

Query: 621 LTLLTGHTDVVRALCFS------------------------------------------- 637
                     VR + FS                                           
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257

Query: 638 ---RDGNILASSGQDCSVKLWDFAK 659
               D    A+ G D ++++WD   
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTT 282

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 585 HKAPVYALSFSVCGRFLASAGGDGN-VHMWDLSNG--HLLTLLTGH-TDVVRALCFS--R 638
            +     LS+      +A   G    V   D  +     +   TGH + VV  + FS  +
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 639 DGNILASSGQDCSVKLWDF 657
               L S  +   V +W +
Sbjct: 76  GSQYLCSGDESGKVIVWGW 94

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 437 CDDILVRIMDERNAETTRTLVGHEGPVRKLSFS---PDRSLLLSCSQDNTIRLWSL 489
             D  +R+ D   ++  +     +  +              ++S S D T+  + L
Sbjct: 270 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.6 bits (202), Expect = 1e-17
 Identities = 25/215 (11%), Positives = 52/215 (24%), Gaps = 15/215 (6%)

Query: 458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC---LVVYKGHGHPVWDIKFSPH- 513
             +  +  +   P +SLLL  S D ++ ++   +      L+    + HP+    F  + 
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 514 GYYFASAGHDRMARLWATDS-YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWD 572
                                     L     +   C       + +   S D  I + D
Sbjct: 69  DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128

Query: 573 CVTGSHVRLLTGHKAPV------YALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG 626
                   +   +             +       L     +  V  + L           
Sbjct: 129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188

Query: 627 HTD----VVRALCFSRDGNILASSGQDCSVKLWDF 657
            +     +       ++    A S  D  V +  F
Sbjct: 189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.4 bits (199), Expect = 4e-17
 Identities = 33/349 (9%), Positives = 77/349 (22%), Gaps = 98/349 (28%)

Query: 390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERN 449
           ++  +I    S+L +   +  + ++    Q                              
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-------------------------- 47

Query: 450 AETTRTLVGHEGPVRKLSFSPDRSLLLSCS------------------------------ 479
                  + ++ P+   +F  +  L +                                 
Sbjct: 48  --DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC 105

Query: 480 --------------QDNTIRLWSLLLWRCLVVYKGHGHPVWD------IKFSPHGYYFAS 519
                          D  I +     +   V+   + +               +      
Sbjct: 106 RICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV 165

Query: 520 AGHDRMARLWATDSYHPLRLFVGHYSD----VDCVQFHPNSNYVATGSSDRTIRLWDCVT 575
             ++   + +           +          D           A  S D  + +     
Sbjct: 166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225

Query: 576 GSHVRLL---------------TGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL 620
                                 T    PV ++ FS   +FL +AG DG +  W+L     
Sbjct: 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285

Query: 621 LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEV 669
           +       +    +  +   NIL  +  D + K       + E+    +
Sbjct: 286 IKNFAKFNEDS-VVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.6 bits (189), Expect = 6e-16
 Identities = 18/176 (10%), Positives = 43/176 (24%), Gaps = 24/176 (13%)

Query: 478 CSQDNTIRLWSLLLWRCLVVYKGHG----HPVWDIKFSPHGYYFASAGHDRMARLWATDS 533
              ++ ++ + L L                             +A +  D    +   D 
Sbjct: 166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225

Query: 534 ---------------YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH 578
                          +            V+ ++F P   ++ T  SD  I  W+  T   
Sbjct: 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285

Query: 579 VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRAL 634
           ++           +  +     L  A  D        +N  +   +  +   +  +
Sbjct: 286 IKNFAKFN-EDSVVKIACSDNILCLATSDD----TFKTNAAIDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 1e-12
 Identities = 9/86 (10%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 537 LRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLL---TGHKAPVYALS 593
           +++       +  ++  P+ + +   S D ++ ++     +    L     +K P+   +
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 594 FSVCGRFLASAGGDGNVHMWDLSNGH 619
           F          G      +     G 
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGS 89

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 3e-11
 Identities = 8/75 (10%), Positives = 21/75 (28%), Gaps = 3/75 (4%)

Query: 579 VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL---LTLLTGHTDVVRALC 635
           V++    K  +  +        L     DG++ ++          L     +   +    
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 636 FSRDGNILASSGQDC 650
           F  + ++    G   
Sbjct: 64  FIDNTDLQIYVGTVQ 78

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 2e-10
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 4/90 (4%)

Query: 493 RCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY---HPLRLFVGHYSDVDC 549
           + + + +     + DIK  P          D    ++  D       L   + +   + C
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 550 VQFHPNS-NYVATGSSDRTIRLWDCVTGSH 578
             F  N+   +  G+    I   D +    
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 6/58 (10%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 620 LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADI 677
           ++ +     D +  +      ++L  +  D S+ ++ F     +      +L +   +
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI-QAKNVDLLQSLRYKHPL 59

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 82.5 bits (202), Expect = 1e-17
 Identities = 32/257 (12%), Positives = 67/257 (26%), Gaps = 28/257 (10%)

Query: 414 WSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGP--VRKLSFSPD 471
            S   +++ A  +  Q  +         + +    +    + +     P  V  +  + D
Sbjct: 96  ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 155

Query: 472 RSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWAT 531
            SL ++      + + +      L       +       +P                W  
Sbjct: 156 GSLYVAGPDIYKMDVKTGKYTVALP----LRNWNRKGYSAPDVL-----------YFWPH 200

Query: 532 DSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS-HVRLLTGHKAPVY 590
            S       +         +F  +    AT          D  TG  H +         +
Sbjct: 201 QSPRHEFSMLYT-----IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 255

Query: 591 ALSFSVCGRFLASAGGDGNVHMWDLSNGHLL-TLLTGHTDVVRALCFSRDGNILASSGQD 649
               S         G    +  +DL    L+      HT     + F + G+ L   G  
Sbjct: 256 TGLRSPKDPNQIY-GVLNRLAKYDLKQRKLIKAANLDHT--YYCVAFDKKGDKLYLGGTF 312

Query: 650 CSVKLWDFAKLSDEVGT 666
             + +++   L  +V  
Sbjct: 313 NDLAVFNPDTLE-KVKN 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 67.5 bits (163), Expect = 1e-12
 Identities = 16/212 (7%), Positives = 42/212 (19%), Gaps = 26/212 (12%)

Query: 466 LSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK-GHGHPVWDIKFSPHG-YYFASAGHD 523
            +       ++  +  N + +  +                      +P     +    H 
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 524 RMARLWATDSYHPLRLF------VGHYSDVDCVQFHPNSNYVATGSSDRT---------- 567
                   D+                   +      P+   V    +             
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 568 --IRLWDCVTGSHVRLLTGHKAP--VYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTL 623
             + ++    G   + +     P  VY +  +  G    +     +++  D+  G     
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVA 178

Query: 624 LTGHTDVVRALCFSRDGNILASSGQDCSVKLW 655
           L       R    + D                
Sbjct: 179 LPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSM 209

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 67.5 bits (163), Expect = 1e-12
 Identities = 17/206 (8%), Positives = 50/206 (24%), Gaps = 12/206 (5%)

Query: 385 NARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRI 444
              +QV     ++D S+   G     + + +        +++ ++      +        
Sbjct: 142 PMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201

Query: 445 MDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV-YKGHGH 503
                                  F  D+    +           L   +     +     
Sbjct: 202 SPRHE---------FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTE 252

Query: 504 PVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS 563
             +    SP          +R+   +       ++          CV F    + +  G 
Sbjct: 253 LYFTGLRSPKDPNQIYGVLNRL-AKYDLKQRKLIK-AANLDHTYYCVAFDKKGDKLYLGG 310

Query: 564 SDRTIRLWDCVTGSHVRLLTGHKAPV 589
           +   + +++  T   V+ +      +
Sbjct: 311 TFNDLAVFNPDTLEKVKNIKLPGGDM 336

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 61.3 bits (147), Expect = 1e-10
 Identities = 10/123 (8%), Positives = 28/123 (22%), Gaps = 8/123 (6%)

Query: 550 VQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT-GHKAPVYALSFSVCGRFL-ASAGGD 607
                   Y+   +    + + D  + +  +      K        +   R         
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 608 GNVHMWDLSNGHLLTLLT------GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS 661
           G+++  DL                     + +   S DG  + ++          +    
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 662 DEV 664
             +
Sbjct: 122 PRL 124

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 81.4 bits (199), Expect = 3e-17
 Identities = 22/204 (10%), Positives = 51/204 (25%), Gaps = 27/204 (13%)

Query: 459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFA 518
               +  L+++ D S L    +D  +          LV  K       +    P      
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPE---AGTLVEDKPIQSWEAETYAQPDVLAVW 189

Query: 519 SAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS- 577
           +                                   + +     +    +   D  TG  
Sbjct: 190 NQHESS------------------GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231

Query: 578 HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLL-TLLTGHTDVVRALCF 636
            +R +       ++ + +              +  +DL     +  +   H+    ++  
Sbjct: 232 AMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKNASIKRVPLPHS--YYSVNV 287

Query: 637 SRDGNILASSGQDCSVKLWDFAKL 660
           S DG+ +   G    +  +D   L
Sbjct: 288 STDGSTVWLGGALGDLAAYDAETL 311

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.1 bits (154), Expect = 1e-11
 Identities = 11/138 (7%), Positives = 33/138 (23%), Gaps = 2/138 (1%)

Query: 459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFA 518
                   +   D       +    +    L      +  +     V+    + +     
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR-EVRIMDVFYFSTAVNPAKTR 254

Query: 519 SAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH 578
           + G   +   +  +    ++  V        V    + + V  G +   +  +D  T   
Sbjct: 255 AFGAYNVLESFDLEKNASIK-RVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313

Query: 579 VRLLTGHKAPVYALSFSV 596
              +        +L+   
Sbjct: 314 KGQVDLPGNASMSLASVR 331

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 61.7 bits (148), Expect = 7e-11
 Identities = 18/260 (6%), Positives = 51/260 (19%), Gaps = 47/260 (18%)

Query: 442 VRIMDERNAETTRTL--VGHEGPVRKLSFSPD-RSLLLSCSQDNTIRLWSLLLWRCLVVY 498
           + ++D       + +              +P  R    + ++  ++    L+    L   
Sbjct: 13  LVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72

Query: 499 KGH-----GHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP-----------LRLFVG 542
                      ++    SP G   A         L   +                R    
Sbjct: 73  DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132

Query: 543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAP-------------- 588
               +  + +  + + +     D  +   +   G+ V                       
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPE--AGTLVEDKPIQSWEAETYAQPDVLAVWN 190

Query: 589 ---------VYALSFSVCGRFLASAGGDGNVHMWDLSNGHLL-TLLTGHTDVVRALCFSR 638
                        +                +   DL  G +    +        +   + 
Sbjct: 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP 250

Query: 639 DGNILASSGQDCSVKLWDFA 658
                        ++ +D  
Sbjct: 251 AKTRAFG--AYNVLESFDLE 268

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 8/109 (7%)

Query: 557 NYVATGSSDRTIRLWDCVTGSHVRLLTGHKAP--VYALSFSVCGRFL-ASAGGDGNVHMW 613
           +Y+   +    + + D    +  +++T   A         +  GR   A+     ++   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 614 DLSNGHLLTLLTGHT-----DVVRALCFSRDGNILASSGQDCSVKLWDF 657
           DL  G  L  +   T       +     S DG  LA       ++L  F
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 23/205 (11%), Positives = 48/205 (23%), Gaps = 22/205 (10%)

Query: 472 RSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP--VWDIKFSPHG-YYFASAGHDRMARL 528
           R  +L+ ++ + + +          V               +P G   +A+         
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 529 WATDSYHPLRLFVGHYSDVD-----CVQFHPNSNYVATGSSDRTIRLWDCVTGSH----- 578
               +   L        +            P+   +A   S   + L             
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 579 ------VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVR 632
                  R        +  L+++  G  L   G D +V   +   G L+           
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE--AGTLVEDKPIQ-SWEA 177

Query: 633 ALCFSRDGNILASSGQDCSVKLWDF 657
                 D   + +  +   V    F
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATPF 202

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 7/126 (5%), Positives = 28/126 (22%), Gaps = 5/126 (3%)

Query: 391 TCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNA 450
                +    +L +      + +  +    +    ++             ++   D    
Sbjct: 211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN 270

Query: 451 ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP----VW 506
            + + +         ++ S D S +        +  +              G+       
Sbjct: 271 ASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLAS 329

Query: 507 DIKFSP 512
              F+ 
Sbjct: 330 VRLFTR 335

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 79.4 bits (194), Expect = 2e-16
 Identities = 20/212 (9%), Positives = 47/212 (22%), Gaps = 29/212 (13%)

Query: 453 TRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP 512
               +    P        D SL                     V +      +    +S 
Sbjct: 149 DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI----THTEVFHPEDEFLINHPAYSQ 204

Query: 513 HGYYFASAGHDRMARLWATDS----------------------YHPLRLFVGHYSDVDCV 550
                    +          S                          +    H +     
Sbjct: 205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY 264

Query: 551 QFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGR--FLASAGGDG 608
                 +     ++ R + + D  TG  +         + +++ S   +    A + GD 
Sbjct: 265 LLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDK 323

Query: 609 NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDG 640
            +++ D  +G  L  +       + +  +  G
Sbjct: 324 TLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.0 bits (154), Expect = 2e-11
 Identities = 27/264 (10%), Positives = 57/264 (21%), Gaps = 52/264 (19%)

Query: 442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCS----------QDNTIRLWSLLL 491
             ++D         + G   P      + D S +   S          + + + ++  + 
Sbjct: 30  QFVIDGEAGRVIGMIDGGFLPN--PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 87

Query: 492 WRCLVVYKGH-------GHPVWDIKFSPHGY--YFASAGHDRMARLWATDSYHPLRLFVG 542
                  +         G   W    +P G    F          +   +     R+   
Sbjct: 88  LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 147

Query: 543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLL------TGHKAPVYALSFSV 596
                    F    +       D ++      T     +          +  +   ++S 
Sbjct: 148 PDCY---HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ 204

Query: 597 CGRFLASAGGDGNVHMWDLSNGHLL----------------------TLLTGHTDVVRAL 634
               L      G +H  DLS+G                           +  H  + R  
Sbjct: 205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY 264

Query: 635 CFSRDGNILASSGQDCSVKLWDFA 658
                 +          V + D  
Sbjct: 265 LLVDQRDEWRHKTASRFVVVLDAK 288

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 4e-05
 Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 12/101 (11%)

Query: 560 ATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAG----------GDGN 609
           A  ++     + D   G  + ++ G   P      +  G F+A A               
Sbjct: 22  AHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDY 79

Query: 610 VHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDC 650
           V ++D         +         +        L   G+  
Sbjct: 80  VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTL 120

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.1 bits (177), Expect = 1e-14
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 576 GSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLL-TLLTGHTDVVRAL 634
           GS  ++  GH   + ALS S  G+ L SA  +G+++ WD+S G         H  ++  +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 635 CFSRDGNILASSGQDCSVKLWD 656
             +  G++   S  D  +K+  
Sbjct: 62  KTTSKGDLFTVSWDDH-LKVVP 82

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 72.7 bits (176), Expect = 1e-14
 Identities = 18/123 (14%), Positives = 33/123 (26%), Gaps = 3/123 (2%)

Query: 454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY-KGHGHPVWDIKFSP 512
           +   GH   +  LS S D   L S   +  I  W +       V+   H   +  IK + 
Sbjct: 6   QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65

Query: 513 HGYYFASAGHD--RMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRL 570
            G  F  +  D  ++     +       +     S    +    + +             
Sbjct: 66  KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125

Query: 571 WDC 573
              
Sbjct: 126 SHG 128

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.9 bits (174), Expect = 3e-14
 Identities = 37/284 (13%), Positives = 79/284 (27%), Gaps = 19/284 (6%)

Query: 390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKLK--------------AMKSSDQLQDIEM 435
           +T    S D   L    +E +I  W +                       S   L  +  
Sbjct: 15  ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW 74

Query: 436 ECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCL 495
           +    +V         +             L+ S D  + ++      I ++S      +
Sbjct: 75  DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTEV 133

Query: 496 VVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN 555
            +                      +         A+ S     +     + V        
Sbjct: 134 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 193

Query: 556 SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL 615
                         + +    +H    T H A V  +S+S     LA+   D +V +W++
Sbjct: 194 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 253

Query: 616 SNG---HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD 656
           +      ++         V ++ +  +   + S+GQD ++K W+
Sbjct: 254 NKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 70.8 bits (171), Expect = 7e-14
 Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 2/85 (2%)

Query: 537 LRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR-LLTGHKAPVYALSFS 595
            ++  GH   +  +    +   + +  ++  I  WD  TG   R     H   +  +  +
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 596 VCGRFLASAGGDGNVHMWDLSNGHL 620
                L +   D ++ +       +
Sbjct: 65  SK-GDLFTVSWDDHLKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.5 bits (165), Expect = 4e-13
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 2/127 (1%)

Query: 492 WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQ 551
               +V+      V              +       +           +  H + V CV 
Sbjct: 172 EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS 231

Query: 552 FHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT--GHKAPVYALSFSVCGRFLASAGGDGN 609
           + P++  +ATGS D ++ +W+    S   ++    H          +    + SAG D N
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN 291

Query: 610 VHMWDLS 616
           +  W++ 
Sbjct: 292 IKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.8 bits (145), Expect = 1e-10
 Identities = 17/124 (13%), Positives = 33/124 (26%), Gaps = 3/124 (2%)

Query: 493 RCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFV-GHYSDVDCVQ 551
               V  GH   +  +  S  G    SA  +     W   +    R+F   H + +  ++
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 552 FHPNSNYVATGSSD--RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGN 609
                +       D  + +        S   +     +    L+ S  G    +A     
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 610 VHMW 613
               
Sbjct: 123 AIYS 126

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.5 bits (139), Expect = 8e-10
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 618 GHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK 659
           G +  +  GH   + AL  S DG  L S+  +  +  WD + 
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 43

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.1 bits (107), Expect = 8e-06
 Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 437 CDDILVRIMDERNAETTRTLV--GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
             D  V + +         ++   H           + + ++S  QD+ I+ W++
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.9 bits (174), Expect = 2e-14
 Identities = 37/279 (13%), Positives = 80/279 (28%), Gaps = 21/279 (7%)

Query: 390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERN 449
           +T       V+ L  G  +  I  WS           S+ +  ++         I  +  
Sbjct: 16  ITAL----TVNPLISGSYDGRIMEWSSSSMH---QDHSNLIVSLDNSKAQEYSSISWDDT 68

Query: 450 AETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIK 509
            +         G   K++ + +       + D+ + +        +   + +        
Sbjct: 69  LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL 128

Query: 510 FSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIR 569
              +         + +     +D      L     +    +   P+  Y+A G     I 
Sbjct: 129 S-QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKIL 187

Query: 570 LWDCVTGSHVRLLTGHKAPV-----------YALSFSVCGRFLASAGGDGNVHMWDLSN- 617
           L+D  +          +               A    +    +A+   D N+ ++ +   
Sbjct: 188 LYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 247

Query: 618 GHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD 656
             ++  L  H D V  L +      L SSG D  +K W+
Sbjct: 248 MKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.0 bits (169), Expect = 1e-13
 Identities = 36/272 (13%), Positives = 79/272 (29%), Gaps = 55/272 (20%)

Query: 449 NAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDI 508
           + E  +T+ GH   +  L+ +P    L+S S D  I  WS        +++ H + +  +
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSS-----SSMHQDHSNLIVSL 52

Query: 509 KFSPHGYYFASAGHDRMAR--------------------------------LWATDSYHP 536
             S    Y + +  D +                                  L        
Sbjct: 53  DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 112

Query: 537 LRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSV 596
           +   V   S    V    N   V     +               L T  +A    +S S 
Sbjct: 113 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP 172

Query: 597 CGRFLASAGGDGNVHMWDLSN-----------GHLLTLLTGHTDVVRALCFSRDGNILAS 645
              ++A+    G + ++DL +              +  ++       A     + +++A+
Sbjct: 173 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 232

Query: 646 SGQDCSVKLWDFAKLSDEVGTEEVNLSHSADI 677
              D ++ ++   +    +       +H   +
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALN---AHKDGV 261

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.3 bits (149), Expect = 3e-11
 Identities = 8/84 (9%), Positives = 24/84 (28%), Gaps = 2/84 (2%)

Query: 492 WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLW-ATDSYHPLRLFVGHYSDVDCV 550
              +             +        A+   D    ++        ++    H   V+ +
Sbjct: 205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL 264

Query: 551 QFHPNSNYVATGSSDRTIRLWDCV 574
            +    + + +  +D  I+ W+ V
Sbjct: 265 LWETP-STLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.5 bits (121), Expect = 1e-07
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 437 CDDILVRIMD-ERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL 490
             D  + I   +R  +  + L  H+  V  L +    S L+S   D  I+ W+++
Sbjct: 234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWNVV 287

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 72.9 bits (178), Expect = 3e-14
 Identities = 28/227 (12%), Positives = 58/227 (25%), Gaps = 12/227 (5%)

Query: 441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLL-SCSQDNTIRLWSLLLWRCLVVYK 499
             +I   R           E  V  +  S  R   + +  +   I L        L   +
Sbjct: 143 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE 202

Query: 500 -GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNY 558
                 + D        YF +A + R   +        L                 N  +
Sbjct: 203 ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH 262

Query: 559 VATGSSDRTIRLWDC---VTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL 615
              G    T  + D    + G+       +   +     ++ G  L       + +++  
Sbjct: 263 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY-- 320

Query: 616 SNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSD 662
               +   L    ++  ++    D   +   G D   K    A+ + 
Sbjct: 321 ----VDATLNPEAEISGSVAVF-DIKAMTGDGSDPEFKTLPIAEWAG 362

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 71.8 bits (175), Expect = 8e-14
 Identities = 24/238 (10%), Positives = 52/238 (21%), Gaps = 20/238 (8%)

Query: 438 DDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV 497
           D   + ++D    E    L            S     L    +D  + +  L +     V
Sbjct: 40  DAGQIALIDGSTYEIKTVLDTGYAVHI-SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV 98

Query: 498 Y-----KGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQ 551
                                  Y  A A       +   ++  P ++        D  +
Sbjct: 99  AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE 158

Query: 552 FHPNSNY------------VATGSSDRTIRLWDCVTGSHVRLLTGHKAPV-YALSFSVCG 598
           +HP                +        I L D    ++++          +        
Sbjct: 159 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH 218

Query: 599 RFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD 656
           R+  +A    N  +   +    L  +              +           +  + D
Sbjct: 219 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD 276

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 65.2 bits (158), Expect = 9e-12
 Identities = 24/223 (10%), Positives = 54/223 (24%), Gaps = 20/223 (8%)

Query: 466 LSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRM 525
             +  +    ++      I L     +    V    G+ V   + S  G Y    G D  
Sbjct: 26  NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGK 84

Query: 526 ARLWATDSYHP-----LRLFVGHYSDVDCVQFHPNSNYV-ATGSSDRTIRLWDCVTGSHV 579
             +       P     +++     S            Y  A         + D  T    
Sbjct: 85  VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144

Query: 580 RLLTGHKAPVYALSFSVCGR------------FLASAGGDGNVHMWDLSNGHLLTLLTGH 627
           ++ +          +    R            F+ +    G + + D ++ + L      
Sbjct: 145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS 204

Query: 628 TD-VVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEV 669
            +  +             ++    +  +    K    V  E+ 
Sbjct: 205 AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 247

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.0 bits (134), Expect = 9e-09
 Identities = 18/186 (9%), Positives = 46/186 (24%), Gaps = 22/186 (11%)

Query: 492 WRCLV-VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCV 550
           W+  V         + D        +  +        L    +Y    +    Y+ V   
Sbjct: 11  WKVHVAPEDRPTQQMNDW--DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHIS 67

Query: 551 QFHPNSNYVATGSSDRTIRLWDCVTGSH-----VRLLTGHKAPVYALSFSVCGRFL-ASA 604
           +   +  Y+     D  + + D           +++ +  ++   +       ++  A A
Sbjct: 68  RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA 127

Query: 605 GGDGNVHMWDLSNGHLL-----------TLLTGHTDVVRALCFSRDGNILASSGQD-CSV 652
                  + D                           V A+  S        + ++   +
Sbjct: 128 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 187

Query: 653 KLWDFA 658
            L D+ 
Sbjct: 188 LLVDYT 193

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 67.3 bits (163), Expect = 2e-12
 Identities = 27/189 (14%), Positives = 51/189 (26%), Gaps = 8/189 (4%)

Query: 438 DDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV 497
           D   + ++D  + +  + +            S     LL   +D  I +  L       V
Sbjct: 40  DAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 98

Query: 498 Y-----KGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQ 551
                                  Y  A A       +   ++  P ++       VD   
Sbjct: 99  AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 158

Query: 552 FHPNSNYVATGSSDRTIRLWDCVTGS-HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNV 610
           +HP     A  +S         V  +  V L+         ++      FLA  G D + 
Sbjct: 159 YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSH 218

Query: 611 HMWDLSNGH 619
             +  +  +
Sbjct: 219 RYFMTAANN 227

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 55.7 bits (133), Expect = 1e-08
 Identities = 29/242 (11%), Positives = 65/242 (26%), Gaps = 22/242 (9%)

Query: 450 AETTRTLVGHEGPVRKLSFSPDRS--LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWD 507
            E+ + LV  E   +K     D      ++      I L      + + V          
Sbjct: 8   RESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HI 66

Query: 508 IKFSPHGYYFASAGHDRMARLWATDSYHP-----LRLFVGHYSDVDCVQFHPNSNYV-AT 561
            + S  G Y    G D    +    +  P     +++ +   S            Y  A 
Sbjct: 67  SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAG 126

Query: 562 GSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSV------------CGRFLASAGGDGN 609
                   + D  T    ++++     V   ++                 F+ +    G 
Sbjct: 127 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK 186

Query: 610 VHMWDLSNGHLLTLLT-GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEE 668
           V + +  +   LT+ + G    +    +        ++  + +      +K        +
Sbjct: 187 VLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 246

Query: 669 VN 670
           V 
Sbjct: 247 VG 248

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 55.3 bits (132), Expect = 1e-08
 Identities = 24/195 (12%), Positives = 55/195 (28%), Gaps = 15/195 (7%)

Query: 492 WRCLV-VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCV 550
           W+ LV         + D+       +  +        L   DS   +++    Y+ V   
Sbjct: 11  WKVLVKPEDRPKKQLNDL--DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHIS 67

Query: 551 QFHPNSNYVATGSSDRTIRLWDCVTGSH-----VRLLTGHKAPVYALSFSVCGRFLASAG 605
           +   +  Y+     D  I + D           +++    ++   +       R+  +  
Sbjct: 68  RMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA 127

Query: 606 -GDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEV 664
                  + D        +++     V    +  +  + A        +     K     
Sbjct: 128 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK----- 182

Query: 665 GTEEVNLSHSADIKN 679
            T +V L +  DI N
Sbjct: 183 ETGKVLLVNYKDIDN 197

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 18/150 (12%), Positives = 41/150 (27%), Gaps = 24/150 (16%)

Query: 459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFA 518
             GPV   S   D S+ L  +       ++   W+ +   +G G     IK  P   +  
Sbjct: 263 KYGPVWSTSHLGDGSISLIGTDPKNHPQYA---WKKVAELQGQGGGSLFIKTHPKSSHLY 319

Query: 519 -------SAGHDRMARLWATDSYHPLRLFVGHYSDVDC---------VQFHPNSNYV--- 559
                   A   +   ++   +       +      D           +++   + V   
Sbjct: 320 VDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS 379

Query: 560 --ATGSSDRTIRLWDCVTGSHVRLLTGHKA 587
                +    + + D  T     ++   + 
Sbjct: 380 VWNGKNDSSALVVVDDKTLKLKAVVKDPRL 409

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 63.8 bits (154), Expect = 2e-11
 Identities = 14/187 (7%), Positives = 34/187 (18%), Gaps = 26/187 (13%)

Query: 456 LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGY 515
            +           S   SL  S                               + +  G 
Sbjct: 169 HIHPGAAATHYLGSCPASLAASDLAAAPAAAG----IVGAQCTGAQNCSSQAAQANYPGM 224

Query: 516 YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD---------- 565
              +     +                G+ S      F      +     +          
Sbjct: 225 LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284

Query: 566 ---------RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFL--ASAGGDGNVHMWD 614
                              G     ++ +     A+  +  G     A++ G   + ++D
Sbjct: 285 HSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343

Query: 615 LSNGHLL 621
            ++    
Sbjct: 344 AASDQDQ 350

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 61.9 bits (149), Expect = 9e-11
 Identities = 15/246 (6%), Positives = 52/246 (21%), Gaps = 29/246 (11%)

Query: 438 DDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDR----------SLLLSCSQDNTIRLW 487
                 +       T    +G    +                   +      + + + ++
Sbjct: 44  GTTENWVSCAGCGVTLGHSLGAFLSL--AVAGHSGSDFALASTSFARSAKGKRTDYVEVF 101

Query: 488 SLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH--------DRMARLWATDSYHPLRL 539
             + +  +   +    P + +    H     ++             A   +       +L
Sbjct: 102 DPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQL 161

Query: 540 FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH------VRLLTGHKAPVYALS 593
                           +     GS   ++   D             +          A  
Sbjct: 162 TKSASCF---HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ 218

Query: 594 FSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVK 653
            +  G  + +            +   +   + G+    +A  F   G  + +  ++    
Sbjct: 219 ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI 278

Query: 654 LWDFAK 659
           +    +
Sbjct: 279 MILTVE 284

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.9 bits (123), Expect = 1e-07
 Identities = 13/159 (8%), Positives = 30/159 (18%), Gaps = 24/159 (15%)

Query: 452 TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFS 511
             +         +    +    L+ + +                    G+        F 
Sbjct: 203 GAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFR 262

Query: 512 PHG------------YYFASAGHDRMA-------RLWATDSYHPL-RLFVGHYSDVDCVQ 551
             G                +  H R                      +  GH    D + 
Sbjct: 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD--SDAII 320

Query: 552 FHPNSNY--VATGSSDRTIRLWDCVTGSHVRLLTGHKAP 588
              +      A  +    + ++D  +      +   K P
Sbjct: 321 AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 61.0 bits (146), Expect = 1e-10
 Identities = 28/263 (10%), Positives = 61/263 (23%), Gaps = 48/263 (18%)

Query: 442 VRIMDERNAETTRTLVGHEGPVRKLSFSPD-RSLLLSCSQDNTIRLWSLLLWRC------ 494
           + ++D  + + T T+     P      SPD   + ++ +  N + +              
Sbjct: 14  ISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA 72

Query: 495 -----------------------------------LVVYKGHGHPVWDIKFSPHGYYFAS 519
                                              +      G     +  SP G     
Sbjct: 73  GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYV 132

Query: 520 AGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV 579
             +              +   V        +   P+   V   + D           + V
Sbjct: 133 TNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV 192

Query: 580 RLLTGHKAPVYALSFSVCGRFLASAGGDGNVH---MWDLSNGHLLTLLTGHTDVVRALCF 636
                 +A    ++ +  G        D   +   M D     +   +    D    +  
Sbjct: 193 IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP-AGIAV 251

Query: 637 SRDGN-ILASSGQDCSVKLWDFA 658
           + DG  +  +     +V + D A
Sbjct: 252 TPDGKKVYVALSFCNTVSVIDTA 274

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 556 SNYV-ATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFL-ASAGGDGNVHMW 613
           S +     S    I + D  +      +     P      S  G  +  +     +V + 
Sbjct: 1   STFAYIANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSII 59

Query: 614 DLSNGHL 620
           D +  ++
Sbjct: 60  DTATNNV 66

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 49.1 bits (115), Expect = 7e-07
 Identities = 30/249 (12%), Positives = 71/249 (28%), Gaps = 17/249 (6%)

Query: 395 ISEDVSILAVGFSESY-IKLWSL----------VPQKLKAMKSSDQLQDIEMECDDILVR 443
           IS D + + V  + S  + +                  + +  S   + + +        
Sbjct: 39  ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTL 98

Query: 444 IMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGH 503
            + +  + T    V        L+ SPD   L   +  +        + + ++     G 
Sbjct: 99  SVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR 158

Query: 504 PVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS 563
               I  +P G     A  D M+        + +   V   +    +  +P        +
Sbjct: 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTN 218

Query: 564 SDRTIRLWDCV---TGSHVRLLTGHKAPVYALSFSVCGRFL-ASAGGDGNVHMWDLSNGH 619
            D+       +   T      +     P   ++ +  G+ +  +      V + D +   
Sbjct: 219 VDKYFNTVSMIDTGTNKITARIPVGPDP-AGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277

Query: 620 LL-TLLTGH 627
           +  T+  G 
Sbjct: 278 ITATMAVGK 286

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 47.2 bits (110), Expect = 3e-06
 Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 8/114 (7%)

Query: 492 WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQ 551
               V  +     +         Y      +     +  T +            D   + 
Sbjct: 192 VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIA 250

Query: 552 FHPNSNYV-ATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASA 604
             P+   V    S   T+ + D  T +    +   K P YA      G+F+ S 
Sbjct: 251 VTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP-YAS-----GQFIGSI 298

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 47.2 bits (110), Expect = 4e-06
 Identities = 21/182 (11%), Positives = 51/182 (28%), Gaps = 3/182 (1%)

Query: 477 SCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSYH 535
           + S+ + I +  +   +         +P      SP G   + +  H     +  T + +
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 536 PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFS 595
            +       S               T  +  T+ + D  + +    +   K+P+  L+ S
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLG-LALS 124

Query: 596 VCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLW 655
             G+ L              +    +          + +  + DG  +  +  D      
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184

Query: 656 DF 657
             
Sbjct: 185 ID 186

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 2/88 (2%)

Query: 418 PQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPD-RSLLL 476
           P  +       +     ++     V ++D    + T  +     P   ++ +PD + + +
Sbjct: 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP-AGIAVTPDGKKVYV 260

Query: 477 SCSQDNTIRLWSLLLWRCLVVYKGHGHP 504
           + S  NT+ +                +P
Sbjct: 261 ALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 19/171 (11%), Positives = 43/171 (25%), Gaps = 8/171 (4%)

Query: 438 DDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLL-SCSQDNTIRLWSLLLWRCLV 496
             I V  ++   A T   +V   G V+ +  SPD+  L      +  +  + +      +
Sbjct: 14  QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL 73

Query: 497 VYKGHGHPVWD---IKFSPHGYYFASAGHDRMARL---WATDSYHPLRLFVGHYSDVDCV 550
            +            I     G +     ++                +   V         
Sbjct: 74  TFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSA 133

Query: 551 QFHPNSNYVATGSSD-RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRF 600
              P++  +   +     I L+      H+      +      +      F
Sbjct: 134 NISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF 184

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 12/104 (11%), Positives = 28/104 (26%), Gaps = 7/104 (6%)

Query: 558 YVATGSSDRTIRLWDCVTGSHVRLL--TGHKAPVYALSFSVCGRFLASAG-GDGNVHMWD 614
           Y+A     + I +W+      + L         V  +  S   R+L      +  V  + 
Sbjct: 7   YIA-SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 615 LSNGHLLTLLTGHTDVVRALC---FSRDGNILASSGQDCSVKLW 655
           ++           + +  +L        G  +     +      
Sbjct: 66  IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSV 109

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 603 SAGGDGNVHMWDLSNGHLLTLL--TGHTDVVRALCFSRDGNIL-ASSGQDCSVKLWDFA 658
           ++     +H+W+L++   LTL         V+ +  S D   L      +  V  +  A
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 22/180 (12%), Positives = 48/180 (26%), Gaps = 10/180 (5%)

Query: 469 SPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK--GHGHPVWDIKFSPHG-YYFASAGHDRM 525
           S  +++ ++  +   I +W+L     L + +       V  +  SP   Y +     +  
Sbjct: 1   SLKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFR 60

Query: 526 ARLWATDS---YHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD----RTIRLWDCVTGSH 578
              +                    +  +       +V  GS +       RL D +    
Sbjct: 61  VLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120

Query: 579 VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSR 638
           V ++ G      A            A     + ++ +S+   L                R
Sbjct: 121 VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 180

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 26/225 (11%), Positives = 61/225 (27%), Gaps = 11/225 (4%)

Query: 442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL--LWRCLVVYK 499
           +R+ D  +      +     P+   ++SPD S L   + ++      +       +    
Sbjct: 21  LRVSD-YDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA 79

Query: 500 GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL-----FVGHYSDVDCVQFHP 554
                     FSP G   A A     +           ++        + ++        
Sbjct: 80  SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQ 139

Query: 555 NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD 614
           N  + +  +    +   +   G+  R+         A   S     +  +   G  H+  
Sbjct: 140 NLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAK 199

Query: 615 LSNGHLLTLLTGHTDVVRALCFSRDGNILA---SSGQDCSVKLWD 656
                    +   T +      + +G ++    S G    + L  
Sbjct: 200 QDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS 244

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 12/115 (10%), Positives = 25/115 (21%), Gaps = 4/115 (3%)

Query: 484 IRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGH 543
           +   ++       +             S   +    + +     +   D        +  
Sbjct: 153 VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS 212

Query: 544 YSDVDCVQFHPNSNYVATGSSDRT---IRLWDCVTGSHVRLLTGHKAPVYALSFS 595
               +     PN   V   SS      + L     G     L      V   ++S
Sbjct: 213 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS-TDGRFKARLPATDGQVKFPAWS 266

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 25/238 (10%), Positives = 52/238 (21%), Gaps = 28/238 (11%)

Query: 444 IMDERNAETTRTLVGHEGPVRKLSFSPDRSLL--LSCSQDNTIRLWSLLLWRCLVVYK-- 499
             D ++  T + +V + G +    F PD   +        +                K  
Sbjct: 25  EHDLKSGSTRK-IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI 83

Query: 500 --------GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL---RLFVGHYSDVD 548
                   G         F P G    S    +                     +     
Sbjct: 84  TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPAT 143

Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG 608
            + F      +   + +                +  +      +             G  
Sbjct: 144 HILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR 203

Query: 609 NVHMWDLS----------NGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD 656
              + D+           +G  L   T  TD       + DG  +  S +  S+ +++
Sbjct: 204 IYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFS-KGGSIYIFN 259

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 26/194 (13%), Positives = 57/194 (29%), Gaps = 8/194 (4%)

Query: 466 LSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP-HGYYFASAGHDR 524
           L+ +PD ++ ++  +   I   +        ++      V  + F+            D 
Sbjct: 33  LASAPDGTIFVTNHEVGEIVSIT--PDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADS 90

Query: 525 MARLWATDSYHPLRLFV--GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV-RL 581
           +  +    S   +   +       ++ +    ++ Y+   S    I L D V  S    L
Sbjct: 91  IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWL 150

Query: 582 LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGN 641
                A   + S       L   G    +++ +     LL +    TD         +  
Sbjct: 151 EHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT 208

Query: 642 ILASSGQDCSVKLW 655
            +     D    L+
Sbjct: 209 NIDDFAFDVEGNLY 222

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 21/212 (9%), Positives = 50/212 (23%), Gaps = 23/212 (10%)

Query: 452 TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFS 511
              T       +   S SPD   +L     N ++ W         +Y  +   +   +  
Sbjct: 53  ENSTFDEFGHSINDYSISPDGQFILLEY--NYVKQWRHSYTASYDIYDLNKRQLITEERI 110

Query: 512 PHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNY-------VATGSS 564
           P+   + +         +  ++   +++     S         +  Y             
Sbjct: 111 PNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170

Query: 565 DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGR--------------FLASAGGDGNV 610
                LW    G+ +     +   V  + +S                     +       
Sbjct: 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKF 230

Query: 611 HMWDLSNGHLLTLLTGHTDVVRALCFSRDGNI 642
            + +  +   +T  T       A     D  +
Sbjct: 231 FVVNTDSLSSVTNATSIQITAPASMLIGDHYL 262

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 19/205 (9%), Positives = 38/205 (18%), Gaps = 20/205 (9%)

Query: 442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH 501
              +          +V      R  +     +            +               
Sbjct: 200 AVDLAGTMRNDRDWVVVFNVE-RIAAAVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPVP 257

Query: 502 GHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVAT 561
            +P          Y+ A+        + A D      LF       D +   P       
Sbjct: 258 KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL--DDLFEDKIELRDTIVAEPELGLGPL 315

Query: 562 GSS-DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL 620
            ++ D     +               + V   + +   +       +      D+     
Sbjct: 316 HTTFDGRGNAYT---------TLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQY--- 363

Query: 621 LTLLTGHTDVVRALCFSRDGNILAS 645
                GH           DG  L  
Sbjct: 364 ---QPGHNHASLTESRDADGKWLVV 385

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	711
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2j4ba1	131	TAF5 subunit of TFIID {Encephalitozoon cuniculi [T	100.0
d2j49a1	134	TAF5 subunit of TFIID {Saccharomyces cerevisiae [T	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.84
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.71
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.69
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.68
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.68
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.63
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.48
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.44
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.44
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.27
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.25
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.23
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.18
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.16
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.12
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.1
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.1
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.07
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.07
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.99
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.97
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.96
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.83
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.81
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.81
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.75
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.72
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.54
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.46
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.44
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.32
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.16
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.97
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.84
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.81
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.78
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.77
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.58
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.56
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.46
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.42
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.34
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.26
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.25
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.13
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.12
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.08
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.98
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.95
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.92
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.9
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.87
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.43
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.21
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.13
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.74
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.68
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.56
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.4
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.33
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.24
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.43
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.61
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	89.75
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	85.58
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	85.5
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	83.82
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	81.28
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	80.11

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-43  Score=325.91  Aligned_cols=149  Identities=50%  Similarity=0.875  Sum_probs=146.2

Q ss_pred             CccccccccccccCCChhHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcCCCcch
Q psy14440        126 DSEIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPH  205 (711)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~yl~lv~~~~~~~a~~f~~~~~~~~~~~  205 (711)
                      +.+++++|++|.+++||+.|+++|.+||+||+++||+||+||++||||||||+||+||++|+.++|++||+||+++|+.+
T Consensus         1 ~~~~~~~l~~~~~~~dp~~Ye~~y~~Lr~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~   80 (149)
T d2nxpa1           1 QPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECY   80 (149)
T ss_dssp             CCCHHHHHGGGSSCCCTTSHHHHHHHHHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGG
T ss_pred             CccHHHHHHhcccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccHHHHHhhcCccEEEeCHHHHHHHHHHHhhcChhhHHHHhhcceEEEEcc
Q psy14440        206 YQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYE  274 (711)
Q Consensus       206 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~v~~s~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~  274 (711)
                      |+++|++|+.|++++||++|+++++||+|||+|+||++++++|++||+++++++|++|||+||+|+|++
T Consensus        81 ~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s~~lLl~~L~~~~~~~il~Ii~~~l~i~v~d  149 (149)
T d2nxpa1          81 YQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFD  149 (149)
T ss_dssp             GHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHHHHTCEEEEEC
T ss_pred             HHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHHHHHHHHHHHhCCChHHHHHHHHHceeeeeC
Confidence            999999999999999999999999999999999999999999999999999999999999999999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.1e-40  Score=337.21  Aligned_cols=276  Identities=25%  Similarity=0.481  Sum_probs=257.1

Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee-----------eeccCccccccccccCCcEEEEEecCC
Q psy14440        381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLK-----------AMKSSDQLQDIEMECDDILVRIMDERN  449 (711)
Q Consensus       381 ~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~-----------~~~~~~~~~~l~~~~~d~~i~i~d~~~  449 (711)
                      +++.+|.+.|+|++|+|++++||+|+.||+|+|||+.+.+..           .+..+.+...++....++.+.+|+...
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG   90 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc
Confidence            578999999999999999999999999999999999765532           334445556667777788888999888


Q ss_pred             CeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q psy14440        450 AETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLW  529 (711)
Q Consensus       450 ~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lw  529 (711)
                      ......+.+|...+.++.|++++..+++++.|+.+++||+.+++.+..+.+|...+.+++|++++.+|++++.|+.|++|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~  170 (317)
T d1vyhc1          91 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW  170 (317)
T ss_dssp             SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEE
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCceeEEeecCCCCeeEEEEcCCC--------------------CEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCe
Q psy14440        530 ATDSYHPLRLFVGHYSDVDCVQFHPNS--------------------NYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPV  589 (711)
Q Consensus       530 d~~~~~~~~~~~~h~~~V~~v~~sp~~--------------------~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I  589 (711)
                      +..+++.+..+.+|...+.+++|++++                    .++++|+.|+.|++||+++++++..+.+|...|
T Consensus       171 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v  250 (317)
T d1vyhc1         171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV  250 (317)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred             eeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCE
Confidence            999999999999999999999998753                    478999999999999999999999999999999


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        590 YALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       590 ~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      .+++|+++|++|++|+.||.|+|||+.+++.+..+.+|.+.|++++|++++++|++|+.||+|+|||
T Consensus       251 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         251 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-38  Score=335.63  Aligned_cols=275  Identities=19%  Similarity=0.313  Sum_probs=248.4

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc----------------eeeeccCccccccccccCCcEE
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK----------------LKAMKSSDQLQDIEMECDDILV  442 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~----------------~~~~~~~~~~~~l~~~~~d~~i  442 (711)
                      ......+|.+.|+|++||++|++||+|+ ||.|+|||+....                +..+.++++...+++++.++.|
T Consensus        43 ~~~~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i  121 (337)
T d1gxra_          43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL  121 (337)
T ss_dssp             EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred             eEEEECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccc
Confidence            3344458999999999999999999997 7999999986432                3445667777888899999999


Q ss_pred             EEEecC--CCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEE
Q psy14440        443 RIMDER--NAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASA  520 (711)
Q Consensus       443 ~i~d~~--~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sg  520 (711)
                      ++||..  +.+....+.+|...|.+++|++++.++++++.|+.|++|++.++++.....+|...|++++|++++..+++|
T Consensus       122 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~  201 (337)
T d1gxra_         122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG  201 (337)
T ss_dssp             EEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999976  445667788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCE
Q psy14440        521 GHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRF  600 (711)
Q Consensus       521 s~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~  600 (711)
                      +.|+.+++||+++++.+..+ .|...|.+++|+|++++|++|+.|+.|++||+++++.. ....|...|++++|+++|++
T Consensus       202 ~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~  279 (337)
T d1gxra_         202 GLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKW  279 (337)
T ss_dssp             ETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSE
T ss_pred             cccccccccccccceeeccc-ccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCE
Confidence            99999999999999888776 47889999999999999999999999999999988865 45679999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        601 LASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       601 Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      |++|+.||.|++||+.+++.+..+. |.+.|.+++|+++|++|++|+.||+|+|||+
T Consensus       280 l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         280 FVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999999999999999999987765 7789999999999999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-38  Score=339.82  Aligned_cols=280  Identities=25%  Similarity=0.438  Sum_probs=244.4

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-----------------------------eeeccCcc
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKL-----------------------------KAMKSSDQ  429 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~-----------------------------~~~~~~~~  429 (711)
                      .+....+|.+.|+|++||+||++||+|+ |+.|+||++.+++.                             ..+.++.+
T Consensus        54 ~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  132 (388)
T d1erja_          54 ELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD  132 (388)
T ss_dssp             EEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred             eeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC
Confidence            3455668999999999999999999997 89999999976442                             23445566


Q ss_pred             ccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEE
Q psy14440        430 LQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIK  509 (711)
Q Consensus       430 ~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~  509 (711)
                      ...+++++.++.|++|+...++....+.+|.+.|.+++|++++..+++|+.++.|++||+.+.........+...+..+.
T Consensus       133 ~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  212 (388)
T d1erja_         133 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV  212 (388)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             CCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccc
Confidence            77888999999999999999999999999999999999999999999999999999999999998888876665555444


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCCceeEEe-------ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-----
Q psy14440        510 FSPHGYYFASAGHDRMARLWATDSYHPLRLF-------VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS-----  577 (711)
Q Consensus       510 ~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~-------~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~-----  577 (711)
                      +..++.+|++|+.||.|++|+..++..+..+       .+|...|.+++|+|++++|++|+.||.|++||++++.     
T Consensus       213 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  292 (388)
T d1erja_         213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS  292 (388)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred             cCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccc
Confidence            4558899999999999999999988776654       3688899999999999999999999999999997653     


Q ss_pred             -------EEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEE------eCCCCEEE
Q psy14440        578 -------HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCF------SRDGNILA  644 (711)
Q Consensus       578 -------~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~f------spdg~~La  644 (711)
                             +......|...|++++|+++|++|++|+.||.|++||+.+++.+..+.+|.+.|.++++      +|++++||
T Consensus       293 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~  372 (388)
T d1erja_         293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA  372 (388)
T ss_dssp             ------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred             ccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEE
Confidence                   34456678999999999999999999999999999999999999999999999999975      56889999


Q ss_pred             EEeCCCcEEEEeCCC
Q psy14440        645 SSGQDCSVKLWDFAK  659 (711)
Q Consensus       645 sgs~Dg~V~iWdl~~  659 (711)
                      |||.||+|+|||+++
T Consensus       373 s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         373 TGSGDCKARIWKYKK  387 (388)
T ss_dssp             EEETTSEEEEEEEEE
T ss_pred             EEeCCCEEEEEeeee
Confidence            999999999999864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.7e-37  Score=321.56  Aligned_cols=247  Identities=24%  Similarity=0.391  Sum_probs=222.4

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG  458 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~  458 (711)
                      ...++.+|.+.|+|++|++++++||+|+.||.|+|||+.                               +++.+..+.+
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~-------------------------------~~~~~~~~~~   95 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY-------------------------------TTNKVHAIPL   95 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-------------------------------TTEEEEEEEC
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecc-------------------------------cceeEEEEec
Confidence            456799999999999999999999999999999999984                               4455677888


Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----E----------------------------------------
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR----C----------------------------------------  494 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~----~----------------------------------------  494 (711)
                      |.+.|.+++|++++.++++|+.|+.+++|+.....    .                                        
T Consensus        96 ~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (340)
T d1tbga_          96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ  175 (340)
T ss_dssp             SCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTE
T ss_pred             ccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999863211    1                                        


Q ss_pred             -EEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC
Q psy14440        495 -LVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDC  573 (711)
Q Consensus       495 -~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~  573 (711)
                       ......+...+....+.+.+.++++|+.|+.|++||+++++.+..+.+|...|++++|+|++++|++|+.||+|++||+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~  255 (340)
T d1tbga_         176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL  255 (340)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEee
Confidence             1112234556777888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEee--CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy14440        574 VTGSHVRLLT--GHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCS  651 (711)
Q Consensus       574 ~~~~~v~~~~--~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~  651 (711)
                      +....+..+.  .+...|++++|+++|++|++|+.||.|+|||+.+++.+..+.+|.+.|++++|++++++|+|||.||+
T Consensus       256 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             TTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             cccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCE
Confidence            9998877764  56678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEe
Q psy14440        652 VKLWD  656 (711)
Q Consensus       652 V~iWd  656 (711)
                      |+|||
T Consensus       336 v~iWd  340 (340)
T d1tbga_         336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

Probab=100.00  E-value=2.4e-40  Score=298.24  Aligned_cols=131  Identities=32%  Similarity=0.603  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcCCCcchHHHHHHHHhcCCCccccc
Q psy14440        144 LYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIR  223 (711)
Q Consensus       144 ~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~yl~lv~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  223 (711)
                      +|+++|.+||+||+++||+||+||++||||||||+||+||++|+.++|++||+||+++|+ .|.++|++|+.|++|+||+
T Consensus         1 q~e~~y~~Lr~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~   79 (131)
T d2j4ba1           1 QMETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIH   79 (131)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHh
Confidence            489999999999999999999999999999999999999999999999999999999997 5899999999999999999


Q ss_pred             ccHHHHHhhcCccEEEeCHHHHHHHHHHHhhcChhhHHHHhhcceEEEEccC
Q psy14440        224 TNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQEHLYFDMYEG  275 (711)
Q Consensus       224 ~~~~~~~~~~~k~~v~~s~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~  275 (711)
                      +|+++++||+|||+|+||++++++|++||+++++++|++|||+|++|++++|
T Consensus        80 ~n~~~~~~r~nKy~i~ms~~s~~lL~~fL~~~~~~~il~iin~~l~i~v~~g  131 (131)
T d2j4ba1          80 ENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHLDIKVYVG  131 (131)
T ss_dssp             HCHHHHHHHHSCEEEEEEHHHHHHHHHHHHHTTCHHHHHHHHHHEEEEEECC
T ss_pred             hhHHHHHHhcCceEEEeCHHHHHHHHHHHHhCCchHHHHHHHHheeEeeeCC
Confidence            9999999999999999999999999999999999999999999999999986

>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=1.1e-39  Score=294.77  Aligned_cols=131  Identities=30%  Similarity=0.573  Sum_probs=126.8

Q ss_pred             hhHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcCCCcchHHHHHHHHhcCCCccc
Q psy14440        142 PNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQ  221 (711)
Q Consensus       142 ~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~yl~lv~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~  221 (711)
                      |+.|+++|.+||+||+++||+||+||++|||||||||||+||++|+ .+|++||++|+++|+.+|+++|++|+.|++|+|
T Consensus         1 P~~Ye~~y~~Lr~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~   79 (134)
T d2j49a1           1 PENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDH   79 (134)
T ss_dssp             CTTHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHH
T ss_pred             ChHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHH
Confidence            7899999999999999999999999999999999999999999986 579999999999999999999999999999999


Q ss_pred             ccccHHHHHhhcCccEEEeCHHHHHHHHHHHhhcCh---hhHHHHhhcceEEEEc
Q psy14440        222 IRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKH---TVLLNIVQEHLYFDMY  273 (711)
Q Consensus       222 ~~~~~~~~~~~~~k~~v~~s~~~~~~l~~~l~~~~~---~~~~~i~~~~~~~~~~  273 (711)
                      |++|+++++||+|||+|+||++++++|++||++++.   ++|++|||+||+|+|+
T Consensus        80 l~~n~~~~~~r~nKy~I~ms~~s~~lLl~fL~~~~~~g~~~il~ii~~~l~i~vv  134 (134)
T d2j49a1          80 IKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIV  134 (134)
T ss_dssp             HHHCHHHHHHHSSCEEEEECHHHHHHHHHHHHHTGGGTHHHHHHHHHHHEEEEEC
T ss_pred             HHhhHHHHHHHcCCeEEEEcHHHHHHHHHHHHhcccchHHHHHHHHHHhcceeeC
Confidence            999999999999999999999999999999999864   6999999999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-36  Score=319.67  Aligned_cols=246  Identities=17%  Similarity=0.282  Sum_probs=220.1

Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccC
Q psy14440        382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEG  461 (711)
Q Consensus       382 tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~  461 (711)
                      .+.+|.+.|+|++|+|||++||+|+.||.|+||++.+..                             ......+.+|.+
T Consensus        53 ~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~  103 (311)
T d1nr0a1          53 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT-----------------------------HILKTTIPVFSG  103 (311)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT-----------------------------CCEEEEEECSSS
T ss_pred             EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc-----------------------------cccccccccccC
Confidence            467899999999999999999999999999999986432                             122345778999


Q ss_pred             CEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCE-EEEEECCCeEEEEECCCCceeE
Q psy14440        462 PVRKLSFSPDRSLLLSCSQ--DNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYY-FASAGHDRMARLWATDSYHPLR  538 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~--Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~-l~sgs~Dg~i~lwd~~~~~~~~  538 (711)
                      +|.+++|++++++|++++.  +..+++|++++++....+.+|...|.+++|+|++.+ |++|+.||+|++||+++++...
T Consensus       104 ~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~  183 (311)
T d1nr0a1         104 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS  183 (311)
T ss_dssp             CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccccccc
Confidence            9999999999999999986  456999999999999999999999999999998874 8889999999999999999999


Q ss_pred             EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee-------CCCCCeEEEEEecCCCEEEEEeCCCcEE
Q psy14440        539 LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT-------GHKAPVYALSFSVCGRFLASAGGDGNVH  611 (711)
Q Consensus       539 ~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~-------~h~~~I~~la~spdg~~Lasgs~Dg~I~  611 (711)
                      .+.+|...|.+++|+|++++|++|+.|+.|++||+.++..+..+.       +|.+.|++++|+++|++|++|+.||.|+
T Consensus       184 ~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~  263 (311)
T d1nr0a1         184 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIK  263 (311)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEE
Confidence            999999999999999999999999999999999999998887764       5889999999999999999999999999


Q ss_pred             EEECCCCeEEEEeeCCCC---CEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        612 MWDLSNGHLLTLLTGHTD---VVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       612 iwDl~sg~~i~~l~~h~~---~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      |||+++++++..+..|..   .+.++.|  +++.|++++.||.|++||.+
T Consensus       264 iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         264 IWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             EEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            999999999999987753   4445555  56689999999999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.7e-36  Score=317.15  Aligned_cols=242  Identities=19%  Similarity=0.305  Sum_probs=218.5

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEE
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRK  465 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~  465 (711)
                      +++.+.+++++|+|+.||.+. ++.|.+|++.+                               ....+.+.+|.+.|++
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~-------------------------------~~~~~~~~~H~~~v~~   63 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS-------------------------------LTDTEIYTEHSHQTTV   63 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC-------------------------------SSCCEEECCCSSCEEE
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCC-------------------------------CceeEEEcCCCCCEEE
Confidence            456677899999999999986 55688998743                               3445567899999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeE--EEEEecCCCCEEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceeEEee
Q psy14440        466 LSFSPDRSLLLSCSQDNTIRLWSLLLWRC--LVVYKGHGHPVWDIKFSPHGYYFASAGH--DRMARLWATDSYHPLRLFV  541 (711)
Q Consensus       466 l~fspdg~~L~s~s~Dg~V~iwdl~t~~~--~~~~~~h~~~V~~v~~sp~g~~l~sgs~--Dg~i~lwd~~~~~~~~~~~  541 (711)
                      ++|+|+|++|++|+.||+|++||+.+...  ...+.+|...|.+++|++++++|++++.  ++.+++|+.++++....+.
T Consensus        64 ~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~  143 (311)
T d1nr0a1          64 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT  143 (311)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC
T ss_pred             EEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999987654  3567889999999999999999999985  4669999999999999999


Q ss_pred             cCCCCeeEEEEcCCCCE-EEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q psy14440        542 GHYSDVDCVQFHPNSNY-VATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL  620 (711)
Q Consensus       542 ~h~~~V~~v~~sp~~~~-latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~  620 (711)
                      +|...|.+++|+|++.+ |++|+.||+|++||+++++....+.+|...|++++|+|++++|++|+.||.|++||+.+++.
T Consensus       144 ~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~  223 (311)
T d1nr0a1         144 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK  223 (311)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             ccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccc
Confidence            99999999999999885 88899999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEEee-------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        621 LTLLT-------GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       621 i~~l~-------~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      +..+.       +|.+.|++++|+++|++|++|+.||+|+|||+++
T Consensus       224 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         224 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  269 (311)
T ss_dssp             EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            87764       5888999999999999999999999999999875

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.4e-35  Score=312.45  Aligned_cols=243  Identities=19%  Similarity=0.288  Sum_probs=213.0

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEE
Q psy14440        387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKL  466 (711)
Q Consensus       387 ~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l  466 (711)
                      .++|+|++||+||++||+|+.||.|+||++.+++                             ...+..+.+|.++|+++
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~-----------------------------~~~~~~l~gH~~~V~~l   57 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----------------------------WVQVHELKEHNGQVTGV   57 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----------------------------EEEEEEEECCSSCEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC-----------------------------EEEEEEecCCCCCEEEE
Confidence            3789999999999999999999999999975432                             23456788999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeEE--EEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCcee----EEe
Q psy14440        467 SFSPDRSLLLSCSQDNTIRLWSLLLWRCL--VVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPL----RLF  540 (711)
Q Consensus       467 ~fspdg~~L~s~s~Dg~V~iwdl~t~~~~--~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~----~~~  540 (711)
                      +|+|++++|++|+.|++|+|||+.++...  ..+.+|...|++++|+|++++|++|+.|+++++|+++.....    ...
T Consensus        58 ~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~  137 (371)
T d1k8kc_          58 DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK  137 (371)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccc
Confidence            99999999999999999999999876544  445678999999999999999999999999999998765432    334


Q ss_pred             ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC------------------cEEEEeeCCCCCeEEEEEecCCCEEE
Q psy14440        541 VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTG------------------SHVRLLTGHKAPVYALSFSVCGRFLA  602 (711)
Q Consensus       541 ~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~------------------~~v~~~~~h~~~I~~la~spdg~~La  602 (711)
                      ..|...|.+++|+|++++|++|+.|++|++||....                  ..+....+|.+.|.+++|+|+|++|+
T Consensus       138 ~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  217 (371)
T d1k8kc_         138 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  217 (371)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             cccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccc
Confidence            568899999999999999999999999999997542                  35667778999999999999999999


Q ss_pred             EEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        603 SAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       603 sgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      +|+.||.|++||+.+++.+..+..|...|.+++|+++|++|++| .|+.+++|+...
T Consensus       218 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~  273 (371)
T d1k8kc_         218 WVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  273 (371)
T ss_dssp             EEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             ccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeC
Confidence            99999999999999999999999999999999999999887765 588888877654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-33  Score=287.98  Aligned_cols=267  Identities=26%  Similarity=0.479  Sum_probs=249.5

Q ss_pred             ceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe
Q psy14440        420 KLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK  499 (711)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~  499 (711)
                      .+..+.++++...++.++.|+.|++||..+++....+.+|.+.|.+++|++++.++++++.++++.+|+.........+.
T Consensus        19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH   98 (317)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC
T ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccc
Confidence            45556666777788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE
Q psy14440        500 GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV  579 (711)
Q Consensus       500 ~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v  579 (711)
                      +|...+.++.|++++.++++++.|+.+++||+++++.+..+.+|...+.+++|++++++|++|+.|+.|++|++.+++.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~  178 (317)
T d1vyhc1          99 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK  178 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             cccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCeEEEEEecCC--------------------CEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCC
Q psy14440        580 RLLTGHKAPVYALSFSVCG--------------------RFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRD  639 (711)
Q Consensus       580 ~~~~~h~~~I~~la~spdg--------------------~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspd  639 (711)
                      ..+.+|...+.+++|++++                    .++++|+.||.|++||+.+++.+..+.+|...|.+++|+++
T Consensus       179 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  258 (317)
T d1vyhc1         179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG  258 (317)
T ss_dssp             EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred             EEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCC
Confidence            9999999999999998763                    47899999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        640 GNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       640 g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      +++|++|+.||+|+|||+.+                       ..++.++..|..+|.+|+|++++.+||
T Consensus       259 ~~~l~s~~~dg~i~iwd~~~-----------------------~~~~~~~~~h~~~V~~~~~s~~~~~l~  305 (317)
T d1vyhc1         259 GKFILSCADDKTLRVWDYKN-----------------------KRCMKTLNAHEHFVTSLDFHKTAPYVV  305 (317)
T ss_dssp             SSCEEEEETTTEEEEECCTT-----------------------SCCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred             CCEEEEEECCCeEEEEECCC-----------------------CcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            99999999999999999864                       234566888999999999999998887

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-33  Score=294.27  Aligned_cols=265  Identities=18%  Similarity=0.297  Sum_probs=232.5

Q ss_pred             CCceeeeccCccccccccccCCcEEEEEecCCCe-----eEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-
Q psy14440        418 PQKLKAMKSSDQLQDIEMECDDILVRIMDERNAE-----TTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL-  491 (711)
Q Consensus       418 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t-  491 (711)
                      +..+..+.++++...++.++ ++.|++||..+..     ......+|.+.|.+++|+|++++|++|+.||+|++||+.. 
T Consensus        51 ~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~  129 (337)
T d1gxra_          51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP  129 (337)
T ss_dssp             SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred             CCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccc
Confidence            34566677788888888876 7899999976543     2334568999999999999999999999999999999864 


Q ss_pred             -CeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEE
Q psy14440        492 -WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRL  570 (711)
Q Consensus       492 -~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~i  570 (711)
                       .+....+.+|...|.+++|++++.++++++.|+.+++|++.+++......+|...|.+++|++++.++++|+.|+.|++
T Consensus       130 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i  209 (337)
T d1gxra_         130 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS  209 (337)
T ss_dssp             --EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             4566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCC
Q psy14440        571 WDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDC  650 (711)
Q Consensus       571 wD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg  650 (711)
                      ||+++++.+..+. |...|++++|++++++|++|+.||.|++||+++++.. ....|.+.|++++|+++|++|++|+.||
T Consensus       210 ~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg  287 (337)
T d1gxra_         210 WDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             EETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCC
Confidence            9999999888775 8899999999999999999999999999999988875 4567899999999999999999999999


Q ss_pred             cEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        651 SVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       651 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      +|++||+....                       .+..+ .+..+|.+++|++++.+||
T Consensus       288 ~i~iwd~~~~~-----------------------~~~~~-~~~~~v~~~~~s~d~~~l~  322 (337)
T d1gxra_         288 LLNAWRTPYGA-----------------------SIFQS-KESSSVLSCDISVDDKYIV  322 (337)
T ss_dssp             EEEEEETTTCC-----------------------EEEEE-ECSSCEEEEEECTTSCEEE
T ss_pred             eEEEEECCCCC-----------------------EEEEc-cCCCCEEEEEEeCCCCEEE
Confidence            99999987532                       12222 2567999999999999887

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.3e-33  Score=289.89  Aligned_cols=272  Identities=16%  Similarity=0.203  Sum_probs=217.8

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee------------eccCccccccccccCCcEEEEEec
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKA------------MKSSDQLQDIEMECDDILVRIMDE  447 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~------------~~~~~~~~~l~~~~~d~~i~i~d~  447 (711)
                      ..++.||.+.|+|++|+|||++||+|+.||+|++||+.+++...            +..+++. .+.+.+.++.+++|+.
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPA   83 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-eeecccceeeEEEecc
Confidence            46789999999999999999999999999999999997755332            2233333 3455667889999986


Q ss_pred             CCCee---EEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Q psy14440        448 RNAET---TRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDR  524 (711)
Q Consensus       448 ~~~~~---~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg  524 (711)
                      .....   ......|...+.+++|+++++.+++++ ++.+++|+...  .....  ....+.+++|++++++|++|+.||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg  158 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGGQDS  158 (299)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEETTS
T ss_pred             CCccccccccccccccccccccccccccccccccc-ccccccccccc--ccccc--cccccccccccccccccccccccc
Confidence            54321   223346778899999999998777665 56799999643  33222  355688999999999999999999


Q ss_pred             eEEEEECCCCceeE-EeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE---EEeeCCCCCeEEEEEecCCCE
Q psy14440        525 MARLWATDSYHPLR-LFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV---RLLTGHKAPVYALSFSVCGRF  600 (711)
Q Consensus       525 ~i~lwd~~~~~~~~-~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v---~~~~~h~~~I~~la~spdg~~  600 (711)
                      .+++||+++++... ....|...|.+++|++++++|++|+.|+.|++||+.++..+   ..+.+|...|++++|+|+|++
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~  238 (299)
T d1nr0a2         159 KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR  238 (299)
T ss_dssp             EEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999998876544 34578999999999999999999999999999999887654   345679999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeE--EEEeeCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        601 LASAGGDGNVHMWDLSNGHL--LTLLTGH-TDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       601 Lasgs~Dg~I~iwDl~sg~~--i~~l~~h-~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      |++|+.||.|+|||+.++..  +.....| ...|..+.| +++++|++||.||+|++||+.
T Consensus       239 l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             eEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            99999999999999987653  3333344 356766655 567899999999999999984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.4e-33  Score=288.18  Aligned_cols=237  Identities=23%  Similarity=0.391  Sum_probs=211.1

Q ss_pred             CeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q psy14440        450 AETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLW  529 (711)
Q Consensus       450 ~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lw  529 (711)
                      .+..++|.||.+.|++++|++++++|+||+.||+|+|||+.+++.+..+.+|...|.+++|+|++.++++|+.|+.+++|
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCc----eeEEe-----------------------------------------ecCCCCeeEEEEcCCCCEEEEEEc
Q psy14440        530 ATDSYH----PLRLF-----------------------------------------VGHYSDVDCVQFHPNSNYVATGSS  564 (711)
Q Consensus       530 d~~~~~----~~~~~-----------------------------------------~~h~~~V~~v~~sp~~~~latgs~  564 (711)
                      +.....    ....+                                         ..+...+.+..+.+.+.++++|+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC  204 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeec
Confidence            865421    11111                                         124455777888888999999999


Q ss_pred             CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee--CCCCCEEEEEEeCCCCE
Q psy14440        565 DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLT--GHTDVVRALCFSRDGNI  642 (711)
Q Consensus       565 Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~--~h~~~V~sl~fspdg~~  642 (711)
                      |+.|++||+++++++..+.+|.+.|++++|+|+|++|++|+.||.|++||+.....+..+.  .|...|.+++|+++|++
T Consensus       205 d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
T d1tbga_         205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCE
T ss_pred             CceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCE
Confidence            9999999999999999999999999999999999999999999999999999998877664  45678999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        643 LASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       643 Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                      |++|+.||+|+|||+.+                       ..++..+..|..+|.+|+|++++.+||
T Consensus       285 l~~g~~dg~i~iwd~~~-----------------------~~~~~~~~~H~~~V~~l~~s~d~~~l~  328 (340)
T d1tbga_         285 LLAGYDDFNCNVWDALK-----------------------ADRAGVLAGHDNRVSCLGVTDDGMAVA  328 (340)
T ss_dssp             EEEEETTSCEEEEETTT-----------------------CCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             EEEEECCCEEEEEECCC-----------------------CcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence            99999999999999864                       234567888999999999999998887

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-31  Score=286.99  Aligned_cols=268  Identities=22%  Similarity=0.404  Sum_probs=228.6

Q ss_pred             CCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee------------------cccCCEEEEEEcCCCCEEEEEe
Q psy14440        418 PQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV------------------GHEGPVRKLSFSPDRSLLLSCS  479 (711)
Q Consensus       418 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~------------------~h~~~V~~l~fspdg~~L~s~s  479 (711)
                      +..+.++.++.++..++.++ |+.|++||..+++....+.                  +|...|++++|++++++|++|+
T Consensus        62 ~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~  140 (388)
T d1erja_          62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA  140 (388)
T ss_dssp             SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence            34566777788888888775 7899999999888776654                  4566799999999999999999


Q ss_pred             CCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEE
Q psy14440        480 QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYV  559 (711)
Q Consensus       480 ~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l  559 (711)
                      .||+|++||...++.+..+.+|...|+++.|++++..+++++.++.+++||..+.........+...+.++.+..++++|
T Consensus       141 ~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  220 (388)
T d1erja_         141 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI  220 (388)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeE
Confidence            99999999999999999999999999999999999999999999999999999988877776665555444444588999


Q ss_pred             EEEEcCCcEEEEECCCCcEEEEe-------eCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe------------E
Q psy14440        560 ATGSSDRTIRLWDCVTGSHVRLL-------TGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGH------------L  620 (711)
Q Consensus       560 atgs~Dg~I~iwD~~~~~~v~~~-------~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~------------~  620 (711)
                      ++|+.||.|++||+.++..+..+       .+|.+.|++++|+++|++|++|+.||.|++||+.++.            .
T Consensus       221 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  300 (388)
T d1erja_         221 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC  300 (388)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CE
T ss_pred             EEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccce
Confidence            99999999999999999877665       3688999999999999999999999999999997653            3


Q ss_pred             EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEE
Q psy14440        621 LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLI  700 (711)
Q Consensus       621 i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~  700 (711)
                      ......|...|.+++|+++|++|++|+.||+|++||+.+                       ..++.++..|..+|.+++
T Consensus       301 ~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~-----------------------~~~~~~l~~H~~~V~~~~  357 (388)
T d1erja_         301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS-----------------------GNPLLMLQGHRNSVISVA  357 (388)
T ss_dssp             EEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT-----------------------CCEEEEEECCSSCEEEEE
T ss_pred             eeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCC-----------------------CcEEEEEeCCCCCEEEEE
Confidence            445567889999999999999999999999999999864                       334667888999999997


Q ss_pred             E------ccCCeeee
Q psy14440        701 F------SRRNILLR  709 (711)
Q Consensus       701 F------s~~n~lla  709 (711)
                      |      ++++.+||
T Consensus       358 ~~~~~~~spd~~~l~  372 (388)
T d1erja_         358 VANGSSLGPEYNVFA  372 (388)
T ss_dssp             ECSSCTTCTTCEEEE
T ss_pred             EecCcccCCCCCEEE
Confidence            5      56788887

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-32  Score=295.52  Aligned_cols=228  Identities=21%  Similarity=0.331  Sum_probs=202.1

Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce-
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR--CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP-  536 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~--~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~-  536 (711)
                      ..+|+|++|+|||++|++|+.||.|+|||+.+++  ++..+++|..+|.+++|+|++++|++|+.|++|++||++++.. 
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            4789999999999999999999999999997665  6677899999999999999999999999999999999987653 


Q ss_pred             -eEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE----EEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q psy14440        537 -LRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH----VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVH  611 (711)
Q Consensus       537 -~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~----v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~  611 (711)
                       ...+.+|...|.+++|+|++++|++|+.|++|++|++.....    ......|...|.+++|+|+|++|++|+.||+|+
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence             445567889999999999999999999999999999876543    334457899999999999999999999999999


Q ss_pred             EEECCC------------------CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcccccccc
Q psy14440        612 MWDLSN------------------GHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSH  673 (711)
Q Consensus       612 iwDl~s------------------g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~  673 (711)
                      +||+..                  ++.+....+|.+.|.+++|+++|++|++|+.||+|++||+..              
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~--------------  232 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK--------------  232 (371)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG--------------
T ss_pred             EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeec--------------
Confidence            999754                  346777788999999999999999999999999999999853              


Q ss_pred             ccccccccccceeeecccCCcceEEEEEccCCeeee-C
Q psy14440        674 SADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR-G  710 (711)
Q Consensus       674 ~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-G  710 (711)
                               ...+..+..+..+|.+|+|+++|.+|| |
T Consensus       233 ---------~~~~~~~~~~~~~v~s~~fs~d~~~la~g  261 (371)
T d1k8kc_         233 ---------KMAVATLASETLPLLAVTFITESSLVAAG  261 (371)
T ss_dssp             ---------TTEEEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred             ---------ccceeeeecccccceeeeecCCCCEEEEE
Confidence                     234566788899999999999999998 6

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.3e-32  Score=285.37  Aligned_cols=256  Identities=17%  Similarity=0.220  Sum_probs=210.4

Q ss_pred             EEEEEecCC-CceEEEEECC--CCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEE
Q psy14440        379 ACYTLLNAR-QQVTCAEISE--DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRT  455 (711)
Q Consensus       379 ~~~tl~~h~-~~V~~l~fs~--dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  455 (711)
                      ...++.+|. ..|++++|+|  +|.+||+|+.||+|+||++...+....                       ........
T Consensus        54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~-----------------------~~~~~~~~  110 (325)
T d1pgua1          54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS-----------------------VEVNVKSE  110 (325)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE-----------------------EEEEEEEE
T ss_pred             ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceee-----------------------eecccccc
Confidence            345567775 5799999997  678999999999999999854321110                       01112334


Q ss_pred             eecccCCEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECC
Q psy14440        456 LVGHEGPVRKLSFSPDRSLLLSCSQ--DNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGY-YFASAGHDRMARLWATD  532 (711)
Q Consensus       456 l~~h~~~V~~l~fspdg~~L~s~s~--Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~-~l~sgs~Dg~i~lwd~~  532 (711)
                      +..|.++|.+++|++++++|++++.  ++.+++|++++++++..+.+|...|.+++|++++. .+++++.|+.+++|+..
T Consensus       111 ~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~  190 (325)
T d1pgua1         111 FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP  190 (325)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT
T ss_pred             cccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccc
Confidence            6679999999999999999988764  67899999999999999999999999999999876 47789999999999998


Q ss_pred             CCceeEEe---ecCCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEe---cCCCEEEEEe
Q psy14440        533 SYHPLRLF---VGHYSDVDCVQFHPN-SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFS---VCGRFLASAG  605 (711)
Q Consensus       533 ~~~~~~~~---~~h~~~V~~v~~sp~-~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~s---pdg~~Lasgs  605 (711)
                      ..+....+   .+|...|.+++|+|+ +.+|++|+.||.|++||+++++.+..+.+|...+.++.|+   ++|++|++|+
T Consensus       191 ~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s  270 (325)
T d1pgua1         191 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG  270 (325)
T ss_dssp             TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE
T ss_pred             ccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEe
Confidence            87665554   356778999999996 6899999999999999999999999999998877666665   7899999999


Q ss_pred             CCCcEEEEECCCCeEEEEeeCCCCC--EEEEEEeCC-CCEEEEEeCCCcEEEEeC
Q psy14440        606 GDGNVHMWDLSNGHLLTLLTGHTDV--VRALCFSRD-GNILASSGQDCSVKLWDF  657 (711)
Q Consensus       606 ~Dg~I~iwDl~sg~~i~~l~~h~~~--V~sl~fspd-g~~Lasgs~Dg~V~iWdl  657 (711)
                      .||.|+|||+.+++.+..+..|...  +..++|.+. +.+|++||.||+|+|||+
T Consensus       271 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         271 ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            9999999999999999988776643  334444332 347899999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-31  Score=276.74  Aligned_cols=293  Identities=26%  Similarity=0.435  Sum_probs=231.6

Q ss_pred             EEEEEecCCCce-EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        379 ACYTLLNARQQV-TCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       379 ~~~tl~~h~~~V-~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      ...++.+|.+.| +|++|  |+++||+|+.||+|+|||+.                               +++.+..+.
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~-------------------------------~~~~~~~l~   50 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSI-------------------------------NKKFLLQLS   50 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETT-------------------------------TTEEEEEEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECC-------------------------------CCcEEEEEE
Confidence            356789998885 66665  57899999999999999984                               455677889


Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC--CEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGH--PVWDIKFSPHGYYFASAGHDRMARLWATDSYH  535 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~--~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~  535 (711)
                      +|.+.|++++|+++ .+|++|+.||+|++|++...........+..  .+..+.+++++.++++++.|++|++||+.+..
T Consensus        51 ~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~  129 (355)
T d1nexb2          51 GHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES  129 (355)
T ss_dssp             CCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC--
T ss_pred             CCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCc
Confidence            99999999999985 5899999999999999999988877665443  34556778889999999999999999998654


Q ss_pred             eeEE-----------------------eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEE
Q psy14440        536 PLRL-----------------------FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL  592 (711)
Q Consensus       536 ~~~~-----------------------~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~l  592 (711)
                      ....                       ...|...+.  .+.++++++++++.|+.|++||+.+++.+..+.++...+.++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  207 (355)
T d1nexb2         130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST  207 (355)
T ss_dssp             ---------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             eeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecccceeeeeecccccceeeeeccccccccc
Confidence            3322                       112333333  345578999999999999999999999999999999999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCcccccc-
Q psy14440        593 SFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNL-  671 (711)
Q Consensus       593 a~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~-  671 (711)
                      .|++++.++++++.||.|++||+.++..+..+.+|.+.|.+++|+  +++|++|+.||+|++||+++............ 
T Consensus       208 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  285 (355)
T d1nexb2         208 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS  285 (355)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEECTTCC
T ss_pred             cccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccceecccccCCce
Confidence            999999999999999999999999999999999999999999986  57999999999999999987654322110000 


Q ss_pred             ----------------ccccccccccccceee-ecccCCcceEEEEEccCCeeee
Q psy14440        672 ----------------SHSADIKNSSLAYLVR-SYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       672 ----------------~~~~~~~~~~~~~~l~-~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                                      .....++....+.++. .+..|..+|.+|+|++++++++
T Consensus       286 ~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~  340 (355)
T d1nexb2         286 AITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAA  340 (355)
T ss_dssp             CCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEE
T ss_pred             EEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEEE
Confidence                            0001122233445553 4677888999999999876555

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-31  Score=271.57  Aligned_cols=302  Identities=26%  Similarity=0.396  Sum_probs=226.3

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccC---------ccccccccccCCcEEEEEecCCC
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSS---------DQLQDIEMECDDILVRIMDERNA  450 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~---------~~~~~l~~~~~d~~i~i~d~~~~  450 (711)
                      ..++.+|.+.|.+ +++++|++||+|+.||+|+|||+.+++.......         -....++.++.|+.+++|+....
T Consensus         9 ~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~   87 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG   87 (342)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred             CEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccccccc
Confidence            3467899999865 3666899999999999999999976553321110         01224555666777777777776


Q ss_pred             eeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q psy14440        451 ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA  530 (711)
Q Consensus       451 ~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd  530 (711)
                      ........+...+....+.  ...++.+..|++|.+|+..+++....+..+.....  .+......+++++.|+.+++||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~i~~~d  163 (342)
T d2ovrb2          88 ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDFMVKVWD  163 (342)
T ss_dssp             EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE--EEEECSSCEEEEETTSCEEEEE
T ss_pred             cceecccccceeEeeeecc--cccccccccceeEEEeecccccceeeeecccccce--eeccccceeeeecCCCeEEEee
Confidence            6666666666666655543  34566666777777777777666666654444333  2334566889999999999999


Q ss_pred             CCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy14440        531 TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNV  610 (711)
Q Consensus       531 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I  610 (711)
                      ......+..+.+|...+.++.+  ++.++++|+.||+|++||++.++.+..+.+|...+.+++++  +++|++|+.||.|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i  239 (342)
T d2ovrb2         164 PETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTV  239 (342)
T ss_dssp             GGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCE
T ss_pred             cccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEE
Confidence            9999999999888877666655  68899999999999999999999999999999999988876  5799999999999


Q ss_pred             EEEECCCCeEEEEeeC---CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceee
Q psy14440        611 HMWDLSNGHLLTLLTG---HTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVR  687 (711)
Q Consensus       611 ~iwDl~sg~~i~~l~~---h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  687 (711)
                      ++||+...+....+.+   |...+.++++  +++++++|+.||+|+|||+++.....                  .....
T Consensus       240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~------------------~~~~~  299 (342)
T d2ovrb2         240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIR------------------NLVTL  299 (342)
T ss_dssp             EEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEE------------------EEEEC
T ss_pred             EEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEE------------------EEecc
Confidence            9999999988888765   4456666666  46799999999999999997532110                  00001


Q ss_pred             ecccCCcceEEEEEccCCeeee-C
Q psy14440        688 SYKTKASPLLHLIFSRRNILLR-G  710 (711)
Q Consensus       688 ~~~t~~~pV~~v~Fs~~n~lla-G  710 (711)
                      ....+..+|.+|+|++++.+|| |
T Consensus       300 ~~~~~~~~v~~v~~s~~~~~la~g  323 (342)
T d2ovrb2         300 ESGGSGGVVWRIRASNTKLVCAVG  323 (342)
T ss_dssp             TTGGGTCEEEEEEECSSEEEEEEE
T ss_pred             cCCCCCCCEEEEEECCCCCEEEEE
Confidence            1234677899999999999998 5

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.7e-30  Score=273.61  Aligned_cols=243  Identities=18%  Similarity=0.295  Sum_probs=202.8

Q ss_pred             CceEEEEECCCCCEEEEEeCCC-eEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeeccc-CCEEE
Q psy14440        388 QQVTCAEISEDVSILAVGFSES-YIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHE-GPVRK  465 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG~~dg-~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-~~V~~  465 (711)
                      ..+++++|+++|+.||+++.++ .|+.|+...                             ........+.+|. ..|++
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~-----------------------------~~~~~~~~~~gh~~~~v~~   68 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGD-----------------------------SKVPPVVQFTGHGSSVVTT   68 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSC-----------------------------CSSCSEEEECTTTTSCEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCC-----------------------------CCccceEEEeCCCCCCEEE
Confidence            4578999999999999987654 345555422                             1223355667774 68999


Q ss_pred             EEEcC--CCCEEEEEeCCCeEEEEECCCCe--------EEEEEecCCCCEEEEEEcCCCCEEEEEEC--CCeEEEEECCC
Q psy14440        466 LSFSP--DRSLLLSCSQDNTIRLWSLLLWR--------CLVVYKGHGHPVWDIKFSPHGYYFASAGH--DRMARLWATDS  533 (711)
Q Consensus       466 l~fsp--dg~~L~s~s~Dg~V~iwdl~t~~--------~~~~~~~h~~~V~~v~~sp~g~~l~sgs~--Dg~i~lwd~~~  533 (711)
                      ++|+|  ++.+|++|+.||+|+|||+..++        ....+..|..+|.+++|+++++++++++.  ++.+++|+.++
T Consensus        69 v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~  148 (325)
T d1pgua1          69 VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS  148 (325)
T ss_dssp             EEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT
T ss_pred             EEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecc
Confidence            99997  66899999999999999985422        22346678999999999999999988764  67899999999


Q ss_pred             CceeEEeecCCCCeeEEEEcCCCCE-EEEEEcCCcEEEEECCCCcEEEEee---CCCCCeEEEEEecC-CCEEEEEeCCC
Q psy14440        534 YHPLRLFVGHYSDVDCVQFHPNSNY-VATGSSDRTIRLWDCVTGSHVRLLT---GHKAPVYALSFSVC-GRFLASAGGDG  608 (711)
Q Consensus       534 ~~~~~~~~~h~~~V~~v~~sp~~~~-latgs~Dg~I~iwD~~~~~~v~~~~---~h~~~I~~la~spd-g~~Lasgs~Dg  608 (711)
                      ++.+..+.+|...|.+++|++++.+ +++++.|+.|++||...++....+.   +|...|++++|+|+ +.+|++|+.||
T Consensus       149 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~  228 (325)
T d1pgua1         149 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR  228 (325)
T ss_dssp             CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred             cccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccccc
Confidence            9999999999999999999998765 6789999999999999887766654   56788999999996 68999999999


Q ss_pred             cEEEEECCCCeEEEEeeCCCCCEEEEEEe---CCCCEEEEEeCCCcEEEEeCCC
Q psy14440        609 NVHMWDLSNGHLLTLLTGHTDVVRALCFS---RDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       609 ~I~iwDl~sg~~i~~l~~h~~~V~sl~fs---pdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      .|++||+++++.+..+.+|...+.++.|+   ++|++|++|+.||+|+|||+..
T Consensus       229 ~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         229 KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             CEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred             ceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC
Confidence            99999999999999999988776655555   6899999999999999999975

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-29  Score=263.74  Aligned_cols=271  Identities=19%  Similarity=0.337  Sum_probs=220.6

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeee-------------ccCccccccccccCCcEEEE
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAM-------------KSSDQLQDIEMECDDILVRI  444 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~-------------~~~~~~~~l~~~~~d~~i~i  444 (711)
                      -++.++.+|.+.|++++|+++ .+|++|+.||.|++|++...+....             ....+...++.++.++.+++
T Consensus        44 ~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  122 (355)
T d1nexb2          44 KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV  122 (355)
T ss_dssp             EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred             cEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEE
Confidence            456788999999999999986 5899999999999999977653321             12234456778889999999


Q ss_pred             EecCCCeeEE-----------------------EeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q psy14440        445 MDERNAETTR-----------------------TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH  501 (711)
Q Consensus       445 ~d~~~~~~~~-----------------------~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h  501 (711)
                      |+..+.....                       ....|...|..  +.++++++++++.|+.|++||+.+++.+....++
T Consensus       123 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  200 (355)
T d1nexb2         123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH  200 (355)
T ss_dssp             EECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEccCCceeccccccceeccceeccccccceeeeeeeccccccc--cccccceeeeecccceeeeeecccccceeeeecc
Confidence            9976654332                       22234444443  4457889999999999999999999999999999


Q ss_pred             CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE
Q psy14440        502 GHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRL  581 (711)
Q Consensus       502 ~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~  581 (711)
                      ...+.++.|++++.++++++.|++|++||.+++..+..+.+|...|.+++|+  +++|++|+.||+|++||++++...  
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--  276 (355)
T d1nexb2         201 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--  276 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--
T ss_pred             ccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccccee--
Confidence            9999999999999999999999999999999999999999999999999996  579999999999999999988654  


Q ss_pred             eeCCCCCeEEE-EEecCCCEEEEEeCCCcEEEEECCCCeEEE-EeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        582 LTGHKAPVYAL-SFSVCGRFLASAGGDGNVHMWDLSNGHLLT-LLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       582 ~~~h~~~I~~l-a~spdg~~Lasgs~Dg~I~iwDl~sg~~i~-~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      +..|...+.++ ++++++++|++| .||.|+|||+++|+++. .+.+|.+.|++++|+++ .++++++.||+++||.+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         277 FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            44566666655 457778777766 58999999999999885 46789999999999986 57888999998666543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.5e-30  Score=276.76  Aligned_cols=262  Identities=18%  Similarity=0.278  Sum_probs=203.8

Q ss_pred             EecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee-------ee----------------c-cCccccccccccC
Q psy14440        383 LLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLK-------AM----------------K-SSDQLQDIEMECD  438 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~-------~~----------------~-~~~~~~~l~~~~~  438 (711)
                      ..+|.+.|.++++++  ++|++|+.|++|+||+.......       ..                . .......++.++.
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            478999999999875  69999999999999997543210       00                0 0111234456677


Q ss_pred             CcEEEEEecCCCeeEE-----Ee-----ecccCCEEEEEEcCC-----CCEEEEEeCCCeEEEEECCCC-----------
Q psy14440        439 DILVRIMDERNAETTR-----TL-----VGHEGPVRKLSFSPD-----RSLLLSCSQDNTIRLWSLLLW-----------  492 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~-----~l-----~~h~~~V~~l~fspd-----g~~L~s~s~Dg~V~iwdl~t~-----------  492 (711)
                      ++.+++|+........     ..     ..+...+..++|..+     +.++++++.||+|++|++...           
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence            8999999754322111     11     135567888888875     468899999999999997321           


Q ss_pred             ----eEEEE---EecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEe------ecCCCCeeEEEEcCCCCEE
Q psy14440        493 ----RCLVV---YKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF------VGHYSDVDCVQFHPNSNYV  559 (711)
Q Consensus       493 ----~~~~~---~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~------~~h~~~V~~v~~sp~~~~l  559 (711)
                          .....   ...+...+.+++|++++ +|++|+.||+|++||+.+++++..+      .+|...|.+++|+|+|++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  246 (393)
T d1sq9a_         168 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL  246 (393)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred             ccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccccee
Confidence                01111   12345678999999988 8999999999999999998876644      4689999999999999999


Q ss_pred             EEEEcCCc---EEEEECCCCcEEEEee-------------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q psy14440        560 ATGSSDRT---IRLWDCVTGSHVRLLT-------------GHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTL  623 (711)
Q Consensus       560 atgs~Dg~---I~iwD~~~~~~v~~~~-------------~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~  623 (711)
                      ++|+.|++   |++||+.+++++..+.             +|.+.|++++|+|+|++|+||+.||+|+|||+.+|+++.+
T Consensus       247 ~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~  326 (393)
T d1sq9a_         247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT  326 (393)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEE
Confidence            99999875   8999999998888764             7999999999999999999999999999999999999999


Q ss_pred             eeCCCCCEE----EEEEeCCCCEEEEEe
Q psy14440        624 LTGHTDVVR----ALCFSRDGNILASSG  647 (711)
Q Consensus       624 l~~h~~~V~----sl~fspdg~~Lasgs  647 (711)
                      +++|.+.|.    .++|+++|..+++++
T Consensus       327 l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         327 LNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             EECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             ECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            999987665    467888887776544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-28  Score=250.06  Aligned_cols=268  Identities=27%  Similarity=0.512  Sum_probs=222.1

Q ss_pred             EecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCC
Q psy14440        383 LLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGP  462 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~  462 (711)
                      ..+|...|+|++|  ||++||+|+.||+|+|||+.                               +++.+..+.+|.+.
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~-------------------------------~~~~~~~l~~H~~~   57 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKN-------------------------------TLECKRILTGHTGS   57 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESS-------------------------------SCCEEEEECCCSSC
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECC-------------------------------CCcEEEEEecCCCC
Confidence            4578889999765  79999999999999999984                               45567788999999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce---eEE
Q psy14440        463 VRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP---LRL  539 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~---~~~  539 (711)
                      |++++|  ++++|++|+.||+|++|++..+........+.....  .+......+++++.++.+++|+......   ...
T Consensus        58 V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (293)
T d1p22a2          58 VLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRV  133 (293)
T ss_dssp             EEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEE
T ss_pred             Eeeeec--ccceeecccccccccccccccccccccccccccccc--cccccccceeecccccceeEeecccccccccccc
Confidence            999987  678999999999999999999988887775555443  3445667899999999999999987653   445


Q ss_pred             eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q psy14440        540 FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGH  619 (711)
Q Consensus       540 ~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~  619 (711)
                      +..|...|.++.+.  ..++++++.|+.|++||+++++.+..+.++...+..+.++  +.+|++++.||.|++||+++++
T Consensus       134 ~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~  209 (293)
T d1p22a2         134 LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA  209 (293)
T ss_dssp             ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC
T ss_pred             ccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccce
Confidence            56788888888776  5678899999999999999999999999999999888876  6789999999999999999999


Q ss_pred             EEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEE
Q psy14440        620 LLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHL  699 (711)
Q Consensus       620 ~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v  699 (711)
                      .+..+.+|...+..  ++.++.+|++|+.||.|++||+........              ......+..+..|..+|.+|
T Consensus       210 ~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--------------~~~~~~~~~~~~H~~~V~~v  273 (293)
T d1p22a2         210 CLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRA--------------PAGTLCLRTLVEHSGRVFRL  273 (293)
T ss_dssp             EEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTS--------------CTTTTEEEEECCCSSCCCCE
T ss_pred             eeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccc--------------cCCceeeEEecCCCCCEEEE
Confidence            99999999988865  566789999999999999999865332111              12345667888999999999


Q ss_pred             EEccCCeeee
Q psy14440        700 IFSRRNILLR  709 (711)
Q Consensus       700 ~Fs~~n~lla  709 (711)
                      +|.+  .+|+
T Consensus       274 ~~d~--~~l~  281 (293)
T d1p22a2         274 QFDE--FQIV  281 (293)
T ss_dssp             EECS--SCEE
T ss_pred             EEcC--CEEE
Confidence            9953  4454

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.1e-29  Score=261.96  Aligned_cols=211  Identities=22%  Similarity=0.315  Sum_probs=179.5

Q ss_pred             CeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCeEEE
Q psy14440        450 AETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK-GHGHPVWDIKFSPHGYYFASAGHDRMARL  528 (711)
Q Consensus       450 ~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~-~h~~~V~~v~~sp~g~~l~sgs~Dg~i~l  528 (711)
                      |+..+.+.||.+.|++++|+||+++|++|+.||+|++||+.+++++..+. +|...|++++|+++|. +++++.|+.+++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~   80 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV   80 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEE
Confidence            45678899999999999999999999999999999999999999888874 6899999999999986 556678999999


Q ss_pred             EECCCCce---------------------------------eEEee-------cCCCCeeEEEEcCCCCEEEEEEcCCcE
Q psy14440        529 WATDSYHP---------------------------------LRLFV-------GHYSDVDCVQFHPNSNYVATGSSDRTI  568 (711)
Q Consensus       529 wd~~~~~~---------------------------------~~~~~-------~h~~~V~~v~~sp~~~~latgs~Dg~I  568 (711)
                      |+......                                 +..+.       .....+.+++|+|++++|++|+.||.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  160 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV  160 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             eccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            98653210                                 00000       123457889999999999999999999


Q ss_pred             EEEECCCCcEEE-EeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE---EeeCCCCCEEEEEEeCCCCEEE
Q psy14440        569 RLWDCVTGSHVR-LLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLT---LLTGHTDVVRALCFSRDGNILA  644 (711)
Q Consensus       569 ~iwD~~~~~~v~-~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~---~l~~h~~~V~sl~fspdg~~La  644 (711)
                      ++||+++++... ....|...|++++|++++++|++|+.||.|++||+.++..+.   .+.+|...|++++|++++++|+
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  240 (299)
T d1nr0a2         161 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA  240 (299)
T ss_dssp             EEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceE
Confidence            999998887654 345689999999999999999999999999999998876653   4567899999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCC
Q psy14440        645 SSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       645 sgs~Dg~V~iWdl~~~~  661 (711)
                      +|+.||+|+|||+....
T Consensus       241 sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         241 TGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             EEETTSCEEEEETTCTT
T ss_pred             EEcCCCEEEEEECCCCC
Confidence            99999999999997643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-28  Score=255.28  Aligned_cols=271  Identities=23%  Similarity=0.432  Sum_probs=228.1

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccC---------ccccccccccCCcEEEEEecCC
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSS---------DQLQDIEMECDDILVRIMDERN  449 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~---------~~~~~l~~~~~d~~i~i~d~~~  449 (711)
                      +..++.+|.+.|++++|+++  +|++|+.|+.+++|+............         ........+..++.+.+|+..+
T Consensus        49 ~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  126 (342)
T d2ovrb2          49 CLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET  126 (342)
T ss_dssp             EEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSS
T ss_pred             EEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeeccc
Confidence            56778899999999999875  999999999999999976554322211         1123345667788999999999


Q ss_pred             CeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q psy14440        450 AETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLW  529 (711)
Q Consensus       450 ~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lw  529 (711)
                      ++....+..+.......  ......+++++.|+.|++||......+..+.+|...+..+.+  ++.++++|+.||+|++|
T Consensus       127 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~  202 (342)
T d2ovrb2         127 GQCLHVLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVW  202 (342)
T ss_dssp             CCEEEEEECCSSCEEEE--EECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred             ccceeeeecccccceee--ccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEe
Confidence            98888877666654443  346678999999999999999999999999999888776655  67899999999999999


Q ss_pred             ECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC---CCCCeEEEEEecCCCEEEEEeC
Q psy14440        530 ATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG---HKAPVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       530 d~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~---h~~~I~~la~spdg~~Lasgs~  606 (711)
                      |++.++.+..+.+|...+.+++++  +++|++|+.||+|++||+...+....+.+   |...+.++++  +++++++|+.
T Consensus       203 d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~  278 (342)
T d2ovrb2         203 DVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSD  278 (342)
T ss_dssp             ETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEET
T ss_pred             ecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcC
Confidence            999999999999999999998886  56999999999999999999988888765   4556666665  4679999999


Q ss_pred             CCcEEEEECCCCeEEEEee-----CCCCCEEEEEEeCCCCEEEEEeCCCc----EEEEeCCC
Q psy14440        607 DGNVHMWDLSNGHLLTLLT-----GHTDVVRALCFSRDGNILASSGQDCS----VKLWDFAK  659 (711)
Q Consensus       607 Dg~I~iwDl~sg~~i~~l~-----~h~~~V~sl~fspdg~~Lasgs~Dg~----V~iWdl~~  659 (711)
                      ||+|+|||+++|+.+..+.     +|.+.|++++|++++.+|++|+.||+    |++||+..
T Consensus       279 Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         279 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            9999999999999988874     57788999999999999999999996    99999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-29  Score=260.38  Aligned_cols=262  Identities=16%  Similarity=0.203  Sum_probs=212.9

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc------eeeeccCccccccccccCCcEEEEEecCCCee
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK------LKAMKSSDQLQDIEMECDDILVRIMDERNAET  452 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~------~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  452 (711)
                      .+.++.+|.+.|+|++|++    |++|+.||+|++|++.+..      +..+.... ...++.++.|+.+++|+....+ 
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~-~~~~~s~s~D~~v~~w~~~~~~-   78 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK-AQEYSSISWDDTLKVNGITKHE-   78 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCS-TTCCEEEETTTEEEETTEEEEE-
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecC-CCeEEEEeeccccccccccccc-
Confidence            3568999999999999987    9999999999999986532      33344443 3456777888999999864321 


Q ss_pred             EEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCC-eEEEEEC
Q psy14440        453 TRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDR-MARLWAT  531 (711)
Q Consensus       453 ~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg-~i~lwd~  531 (711)
                            ....+.++++++++..++++ .++.+.+|+..+++.+..+..+ ..+  .++++++..+++++.++ .+++|++
T Consensus        79 ------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v~~~~~  148 (287)
T d1pgua2          79 ------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEEGNTIQVFKL  148 (287)
T ss_dssp             ------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETTTSCEEEEET
T ss_pred             ------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccc-cee--eeeeccCcceeeeccccceeeeeec
Confidence                  34567888999888776665 4566899999999988887744 344  45566778888888775 7999999


Q ss_pred             CCCceeEEee-cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE-EeeCCCCCeEEEEEecC----------CC
Q psy14440        532 DSYHPLRLFV-GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR-LLTGHKAPVYALSFSVC----------GR  599 (711)
Q Consensus       532 ~~~~~~~~~~-~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~-~~~~h~~~I~~la~spd----------g~  599 (711)
                      ........+. .|...+++++|+|++.+|++|+.||.|++||+.++.... .+.+|...|.+++|+|+          +.
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~  228 (287)
T d1pgua2         149 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED  228 (287)
T ss_dssp             TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred             cccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCC
Confidence            8665554443 477889999999999999999999999999999988765 46789999999999875          46


Q ss_pred             EEEEEeCCCcEEEEECCC-CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        600 FLASAGGDGNVHMWDLSN-GHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       600 ~Lasgs~Dg~I~iwDl~s-g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      +|++|+.||+|+|||+.+ ++.+..+.+|.+.|++++|++++ .|+++|.||+|++||+
T Consensus       229 ~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         229 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            899999999999999977 56788888999999999999986 5889999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2e-28  Score=252.86  Aligned_cols=249  Identities=11%  Similarity=0.053  Sum_probs=191.7

Q ss_pred             EecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCC
Q psy14440        383 LLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGP  462 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~  462 (711)
                      ..+|.+.|++++|+|++++||+|+.||+|+|||+.....                            ........+|.++
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~----------------------------~~~~~~~~~h~~~   58 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK----------------------------NVDLLQSLRYKHP   58 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----------------------------EEEEEEEEECSSC
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc----------------------------ceEEEEecCCCCC
Confidence            468999999999999999999999999999999854221                            1123344579999


Q ss_pred             EEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEEecCCCC-EEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEe
Q psy14440        463 VRKLSFSPDR-SLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP-VWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF  540 (711)
Q Consensus       463 V~~l~fspdg-~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~-V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~  540 (711)
                      |++++|++++ .+|++|+.||+|++|++...........+... .....+.+++..+++++.|+++++||++........
T Consensus        59 V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~  138 (342)
T d1yfqa_          59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIA  138 (342)
T ss_dssp             EEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred             EEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceee
Confidence            9999999864 58999999999999999888777766655443 445556667889999999999999998754433222


Q ss_pred             ----ec--CCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE---EEeeCCCCCeEEEEEe-cCCCEEEEEeCCCcE
Q psy14440        541 ----VG--HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV---RLLTGHKAPVYALSFS-VCGRFLASAGGDGNV  610 (711)
Q Consensus       541 ----~~--h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v---~~~~~h~~~I~~la~s-pdg~~Lasgs~Dg~I  610 (711)
                          ..  ......++.+.+++..+++++.|+.|++||+..+...   .....+...+.+.++. .++..+++++.||.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  218 (342)
T d1yfqa_         139 VKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV  218 (342)
T ss_dssp             EEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEE
T ss_pred             ecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeE
Confidence                22  2234556777888999999999999999999876543   2333455556666554 467899999999999


Q ss_pred             EEEECCCCe---------EEEE------eeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        611 HMWDLSNGH---------LLTL------LTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       611 ~iwDl~sg~---------~i~~------l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      .+|++....         ....      ..+|...|++++|+|++++|||||.||+|+|||+.+
T Consensus       219 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~  282 (342)
T d1yfqa_         219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             EEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCC
Confidence            999976432         1111      124667899999999999999999999999999875

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.8e-27  Score=256.86  Aligned_cols=230  Identities=15%  Similarity=0.264  Sum_probs=176.8

Q ss_pred             cccccccCCcEEEEEecCCCe------eEEEeecccCCEEEEEEc------C-CCCEEEEEeCCCeEEEEECCCCeE---
Q psy14440        431 QDIEMECDDILVRIMDERNAE------TTRTLVGHEGPVRKLSFS------P-DRSLLLSCSQDNTIRLWSLLLWRC---  494 (711)
Q Consensus       431 ~~l~~~~~d~~i~i~d~~~~~------~~~~l~~h~~~V~~l~fs------p-dg~~L~s~s~Dg~V~iwdl~t~~~---  494 (711)
                      ..++.++.|+.|++||..+..      .......|...+..+...      . ++..+++++.||+|++|++.....   
T Consensus        25 ~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~  104 (393)
T d1sq9a_          25 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK  104 (393)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred             CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceee
Confidence            457788889999999965432      233344555554433321      1 234678999999999999743221   


Q ss_pred             EE--EE-----ecCCCCEEEEEEcCC-----CCEEEEEECCCeEEEEECCCCc------------------eeEEeecCC
Q psy14440        495 LV--VY-----KGHGHPVWDIKFSPH-----GYYFASAGHDRMARLWATDSYH------------------PLRLFVGHY  544 (711)
Q Consensus       495 ~~--~~-----~~h~~~V~~v~~sp~-----g~~l~sgs~Dg~i~lwd~~~~~------------------~~~~~~~h~  544 (711)
                      ..  ..     ..+...++.++|.++     +.++++++.||++++|++....                  .......+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (393)
T d1sq9a_         105 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS  184 (393)
T ss_dssp             EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSC
T ss_pred             eeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCC
Confidence            11  11     124566888888775     4689999999999999975321                  011122355


Q ss_pred             CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEe------eCCCCCeEEEEEecCCCEEEEEeCCCc---EEEEEC
Q psy14440        545 SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLL------TGHKAPVYALSFSVCGRFLASAGGDGN---VHMWDL  615 (711)
Q Consensus       545 ~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~------~~h~~~I~~la~spdg~~Lasgs~Dg~---I~iwDl  615 (711)
                      ..+.|++|+|++ +||+|+.||+|+|||+.+++.+..+      .+|...|++++|+|+|++|++|+.|++   |++||+
T Consensus       185 ~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~  263 (393)
T d1sq9a_         185 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET  263 (393)
T ss_dssp             CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred             CcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccc
Confidence            668999999987 8999999999999999999887654      468999999999999999999998874   999999


Q ss_pred             CCCeEEEEee-------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        616 SNGHLLTLLT-------------GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       616 ~sg~~i~~l~-------------~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      .+++.+..+.             +|.+.|++|+|+|+|++|+|||.||+|+|||+.+..
T Consensus       264 ~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         264 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            9999888774             799999999999999999999999999999998753

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.6e-25  Score=221.67  Aligned_cols=236  Identities=29%  Similarity=0.523  Sum_probs=196.2

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV  457 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~  457 (711)
                      -+..++.+|.+.|+|++|  ++++|++|+.||.|++|++......                               ....
T Consensus        46 ~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~-------------------------------~~~~   92 (293)
T d1p22a2          46 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML-------------------------------NTLI   92 (293)
T ss_dssp             CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE-------------------------------EEEC
T ss_pred             cEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccc-------------------------------cccc
Confidence            356678899999999987  6789999999999999998654321                               1222


Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---EEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWR---CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSY  534 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~---~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~  534 (711)
                      .+...  ...+......+++++.++.+++|+..+..   ....+..|...|..+.+.  ...+++++.|+.+++||.+++
T Consensus        93 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~  168 (293)
T d1p22a2          93 HHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTC  168 (293)
T ss_dssp             CCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTC
T ss_pred             ccccc--cccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCC
Confidence            22222  23344566789999999999999997654   455667788889888876  457889999999999999999


Q ss_pred             ceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q psy14440        535 HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD  614 (711)
Q Consensus       535 ~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwD  614 (711)
                      +.+..+.++...+.++.++  +.++++++.||+|++||++++..+..+.+|...+.+  ++.++.+|++|+.||.|++||
T Consensus       169 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd  244 (293)
T d1p22a2         169 EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWD  244 (293)
T ss_dssp             CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEE
T ss_pred             cEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEE
Confidence            9999999999999888876  578999999999999999999999999999988875  456789999999999999999


Q ss_pred             CCC---------CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        615 LSN---------GHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       615 l~s---------g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      +.+         ...+..+.+|.+.|++++|  ++++|+|||.||+|+|||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         245 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             HHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             CCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            743         4578889999999999999  577899999999999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=7.2e-25  Score=224.28  Aligned_cols=257  Identities=14%  Similarity=0.133  Sum_probs=199.3

Q ss_pred             eEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy14440        410 YIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL  489 (711)
Q Consensus       410 ~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl  489 (711)
                      .|++..-....+..+..+.    ++.++.|+.|++||..++     ..+|.+.|.+++|+++ ..+++++.|++|++|++
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGI   74 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETTE
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeeccccccccc
Confidence            3444444445555555543    788889999999987653     3588999999998865 46788899999999987


Q ss_pred             CCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCC-cE
Q psy14440        490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR-TI  568 (711)
Q Consensus       490 ~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg-~I  568 (711)
                      ...+       ....+.++.+++++..+++ +.++.+.+|+..+++.+..+..+.   .+.++++++..+++++.++ .|
T Consensus        75 ~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~v  143 (287)
T d1pgua2          75 TKHE-------FGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRLNS---PGSAVSLSQNYVAVGLEEGNTI  143 (287)
T ss_dssp             EEEE-------CSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEECSS---CEEEEEECSSEEEEEETTTSCE
T ss_pred             cccc-------cccceeeeeeccCCceEEE-eecccceeeeccceeeeeeccccc---eeeeeeccCcceeeecccccee
Confidence            5321       3455677888887755554 456678889888888877765432   3456677888998888775 79


Q ss_pred             EEEECCCCcEEEEee-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE-EeeCCCCCEEEEEEeCC-------
Q psy14440        569 RLWDCVTGSHVRLLT-GHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLT-LLTGHTDVVRALCFSRD-------  639 (711)
Q Consensus       569 ~iwD~~~~~~v~~~~-~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~-~l~~h~~~V~sl~fspd-------  639 (711)
                      ++|++...+....+. .|.+.+++++|+|+|.+|++|+.||.|++||+.+++.+. .+.+|.+.|.+++|+|+       
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~  223 (287)
T d1pgua2         144 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE  223 (287)
T ss_dssp             EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred             eeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccc
Confidence            999998776655554 578899999999999999999999999999999998765 46789999999999874       


Q ss_pred             ---CCEEEEEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        640 ---GNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       640 ---g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                         +.+|++|+.||+|+|||+.+..                      ..+..+..|...|.+|+|++++.+++
T Consensus       224 ~~~~~~l~sgs~D~~i~iw~~~~~~----------------------~~~~~~~~h~~~V~~v~~~~~~~l~s  274 (287)
T d1pgua2         224 EIEEDLVATGSLDTNIFIYSVKRPM----------------------KIIKALNAHKDGVNNLLWETPSTLVS  274 (287)
T ss_dssp             CCSCCEEEEEETTSCEEEEESSCTT----------------------CCEEETTSSTTCEEEEEEEETTEEEE
T ss_pred             cCCCCeeEeecCCCeEEEEECCCCC----------------------eEEEEeCCCCCCeEEEEECCCCEEEE
Confidence               5689999999999999986522                      23455777899999999999998776

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=1e-25  Score=236.54  Aligned_cols=264  Identities=11%  Similarity=0.046  Sum_probs=205.7

Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEeCCCCcee---------eeccCccccccccccCC--cEEEEEecCCCeeEEEeecc
Q psy14440        392 CAEISE-DVSILAVGFSESYIKLWSLVPQKLK---------AMKSSDQLQDIEMECDD--ILVRIMDERNAETTRTLVGH  459 (711)
Q Consensus       392 ~l~fs~-dg~~LatG~~dg~I~vWdl~~~~~~---------~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~l~~h  459 (711)
                      .-.||| ||+++|+++ +|.|.+|++.++.+.         .+.+++++..+++.+.+  ..+++||..+++ ...+..|
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-~~~~~~~   84 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AEKFEEN   84 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-EEECCCC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-EEEeeCC
Confidence            467998 999999986 478999999776543         34556667677655433  478999987765 4567889


Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE----------CCCeEEEE
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG----------HDRMARLW  529 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs----------~Dg~i~lw  529 (711)
                      .+.|.+++|+|||++|++++.++.+++|++.+++....+..|...+.+++|+|+|++|+.++          .++.+++|
T Consensus        85 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~  164 (360)
T d1k32a3          85 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY  164 (360)
T ss_dssp             CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             CceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeee
Confidence            99999999999999999999999999999999999999999999999999999999998654          34579999


Q ss_pred             ECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-------EEEeeCC-----------------
Q psy14440        530 ATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH-------VRLLTGH-----------------  585 (711)
Q Consensus       530 d~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~-------v~~~~~h-----------------  585 (711)
                      +..+++... +..+...+.+++|+|+|++|++++.++.+++||......       ...+..|                 
T Consensus       165 d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  243 (360)
T d1k32a3         165 DMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE  243 (360)
T ss_dssp             ETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCC
T ss_pred             ccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCccc
Confidence            999876554 445677889999999999999999999999998754321       1211111                 


Q ss_pred             -------------------CCCeEEEEEecCC-------------CEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEE
Q psy14440        586 -------------------KAPVYALSFSVCG-------------RFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRA  633 (711)
Q Consensus       586 -------------------~~~I~~la~spdg-------------~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~s  633 (711)
                                         .+....+...+++             .++++++.++.|++||+.+++..    .|.+.|.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~  319 (360)
T d1k32a3         244 AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTD  319 (360)
T ss_dssp             CCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEE
T ss_pred             ccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCE
Confidence                               1122233333222             23455667889999999987753    23456899


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        634 LCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       634 l~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      ++|||||++|++++.||+|++||+.+...
T Consensus       320 ~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         320 LRLSADRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             EEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred             EEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence            99999999999999999999999987554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=6e-23  Score=211.26  Aligned_cols=251  Identities=14%  Similarity=0.091  Sum_probs=184.7

Q ss_pred             eeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE---EEEEecCCCCEEEEEEcCC-CCEEEEEECCCeE
Q psy14440        451 ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC---LVVYKGHGHPVWDIKFSPH-GYYFASAGHDRMA  526 (711)
Q Consensus       451 ~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~---~~~~~~h~~~V~~v~~sp~-g~~l~sgs~Dg~i  526 (711)
                      +.+....+|+..|++|+|+|++++|++||.||+|+|||+.+...   +....+|..+|.+++|+++ +.+|++|+.||+|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            34566779999999999999999999999999999999965433   2333469999999999986 4689999999999


Q ss_pred             EEEECCCCceeEEeecCCCCe-eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE----EEeeCC--CCCeEEEEEecCCC
Q psy14440        527 RLWATDSYHPLRLFVGHYSDV-DCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV----RLLTGH--KAPVYALSFSVCGR  599 (711)
Q Consensus       527 ~lwd~~~~~~~~~~~~h~~~V-~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v----~~~~~h--~~~I~~la~spdg~  599 (711)
                      ++|+............+...+ ....+.+++..+++++.|+++++||++++...    .....+  ......+.+.+++.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            999999887777666555444 45556678899999999999999998754432    222222  23455667788899


Q ss_pred             EEEEEeCCCcEEEEECCCCeE---EEEeeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCCCccCcccccccccc
Q psy14440        600 FLASAGGDGNVHMWDLSNGHL---LTLLTGHTDVVRALCFSR-DGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSA  675 (711)
Q Consensus       600 ~Lasgs~Dg~I~iwDl~sg~~---i~~l~~h~~~V~sl~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~  675 (711)
                      .+++++.||.|++||+..++.   ......+...+.+..+.+ ++..+++++.||.+.+|++...............   
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~---  238 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF---  238 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE---
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee---
Confidence            999999999999999987643   223334445566665544 6789999999999999999765443221111000   


Q ss_pred             ccccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        676 DIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       676 ~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                           ...........+...|.+|+|++++.+||
T Consensus       239 -----~~~~~~~~~~~~~~~v~~l~~sp~~~~la  267 (342)
T d1yfqa_         239 -----RCHRLNLKDTNLAYPVNSIEFSPRHKFLY  267 (342)
T ss_dssp             -----ECCCCCTTCCSSCCCEEEEEECTTTCCEE
T ss_pred             -----eeeeeccCCCcccccceeEEecCCccEEE
Confidence                 01111122445667899999999999988

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=6.2e-23  Score=215.08  Aligned_cols=188  Identities=12%  Similarity=0.025  Sum_probs=159.7

Q ss_pred             cCc-cccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeEEEEEecCC
Q psy14440        426 SSD-QLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDN--TIRLWSLLLWRCLVVYKGHG  502 (711)
Q Consensus       426 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg--~V~iwdl~t~~~~~~~~~h~  502 (711)
                      +++ ++..++.. ..+.+++||..++...+  .+|.+.|.+++|+|||++|++++.+.  .|++||+.+++.. .+..|.
T Consensus        10 fSP~dG~~~a~~-~~g~v~v~d~~~~~~~~--~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~   85 (360)
T d1k32a3          10 FSPLDGDLIAFV-SRGQAFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENL   85 (360)
T ss_dssp             EEECGGGCEEEE-ETTEEEEECTTSSBEEE--CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCC
T ss_pred             ccCCCCCEEEEE-ECCeEEEEECCCCcEEE--ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCC
Confidence            454 55566554 45799999998877654  37999999999999999998877653  7999999887654 566799


Q ss_pred             CCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEc----------CCcEEEEE
Q psy14440        503 HPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS----------DRTIRLWD  572 (711)
Q Consensus       503 ~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~----------Dg~I~iwD  572 (711)
                      ..|.+++|+|+|++|++++.++.+++|+..+++....+..|...+.+++|+|+|++|+.++.          ++.+++||
T Consensus        86 ~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d  165 (360)
T d1k32a3          86 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD  165 (360)
T ss_dssp             CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             ceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeec
Confidence            99999999999999999999999999999999999999999999999999999999987653          44699999


Q ss_pred             CCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q psy14440        573 CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNG  618 (711)
Q Consensus       573 ~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg  618 (711)
                      +.+++... +..|...+.+++|++||++|++++.++.+.+||....
T Consensus       166 ~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         166 MEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             TTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             cccCceee-ecccccccccccccCCCCEEEEEeCCCceEccccccc
Confidence            99887654 4457788899999999999999999999999986543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=5.2e-20  Score=187.62  Aligned_cols=253  Identities=14%  Similarity=0.101  Sum_probs=200.9

Q ss_pred             EEEeCCCeEEEEeCCCCceee----------eccCccccccc-cccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCC
Q psy14440        403 AVGFSESYIKLWSLVPQKLKA----------MKSSDQLQDIE-MECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPD  471 (711)
Q Consensus       403 atG~~dg~I~vWdl~~~~~~~----------~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspd  471 (711)
                      ++++.|++|.|||+.+.++..          +..++++..+. .+..++.|.+||..+++.+..+..|.. +..++|+++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~   84 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPD   84 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTT
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccc
Confidence            456778889999988766432          34455555553 455678899999999999888887765 689999999


Q ss_pred             CCEEEE-EeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEE-EEECCCeEEEEECCCCceeEEeecCCCCeeE
Q psy14440        472 RSLLLS-CSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFA-SAGHDRMARLWATDSYHPLRLFVGHYSDVDC  549 (711)
Q Consensus       472 g~~L~s-~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~-sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~  549 (711)
                      +..+++ +..++.+.+|+..+++....+..+ ....++.|+++|..++ ++..++.+.+|+..+...+..+..+ ..+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  162 (301)
T d1l0qa2          85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKG  162 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEE
T ss_pred             cccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceE
Confidence            986655 556788999999999998888754 5678899999998765 4556889999999999888877644 56889


Q ss_pred             EEEcCCCCEEEEEEcC-CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCeEEEEee
Q psy14440        550 VQFHPNSNYVATGSSD-RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG---DGNVHMWDLSNGHLLTLLT  625 (711)
Q Consensus       550 v~~sp~~~~latgs~D-g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~---Dg~I~iwDl~sg~~i~~l~  625 (711)
                      +.+++++.++++++.+ +.+.+|+.........+.. ...+..++|+++|+.+++++.   ++.|++||+.+++.+..+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~  241 (301)
T d1l0qa2         163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP  241 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE
T ss_pred             EEeeccccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc
Confidence            9999999998888765 5677888777776666654 455788999999998876643   4689999999999998887


Q ss_pred             CCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEeCCCC
Q psy14440        626 GHTDVVRALCFSRDGNIL-ASSGQDCSVKLWDFAKL  660 (711)
Q Consensus       626 ~h~~~V~sl~fspdg~~L-asgs~Dg~V~iWdl~~~  660 (711)
                      .+ ..+++++|+|||++| ++++.|++|++||+.+.
T Consensus       242 ~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         242 VG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            54 468999999999976 57778999999999764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.2e-21  Score=213.51  Aligned_cols=262  Identities=12%  Similarity=0.037  Sum_probs=181.1

Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeC
Q psy14440        401 ILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQ  480 (711)
Q Consensus       401 ~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~  480 (711)
                      +++++..||.|+|||+.                               +++.+.++..|. .+.+++|||||++|++++.
T Consensus        34 ~~V~~~~dg~v~vwD~~-------------------------------t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~   81 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGD-------------------------------SKKIVKVIDTGY-AVHISRMSASGRYLLVIGR   81 (426)
T ss_dssp             EEEEETTTTEEEEEETT-------------------------------TCSEEEEEECCS-SEEEEEECTTSCEEEEEET
T ss_pred             EEEEEcCCCEEEEEECC-------------------------------CCcEEEEEeCCC-CeeEEEECCCCCEEEEEeC
Confidence            55677788888888874                               455666777664 5899999999999999999


Q ss_pred             CCeEEEEECCCCeEEEEE--e---cCCCCEEEEEEcCCCCEEEE-EECCCeEEEEECCCCceeEEeecCCCCeeE-----
Q psy14440        481 DNTIRLWSLLLWRCLVVY--K---GHGHPVWDIKFSPHGYYFAS-AGHDRMARLWATDSYHPLRLFVGHYSDVDC-----  549 (711)
Q Consensus       481 Dg~V~iwdl~t~~~~~~~--~---~h~~~V~~v~~sp~g~~l~s-gs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~-----  549 (711)
                      |++|++||+.+++.....  .   +|...+.+++|+|+|+++++ +..++++++||..++..+..+.+|...+..     
T Consensus        82 d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  161 (426)
T d1hzua2          82 DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP  161 (426)
T ss_dssp             TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred             CCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecC
Confidence            999999999988754433  2   45666778888999998754 458999999999999988887766555444     


Q ss_pred             ------EEEcCCCCEEEEEEc-CCcEEEEECCCCcEE-EEeeCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCC--
Q psy14440        550 ------VQFHPNSNYVATGSS-DRTIRLWDCVTGSHV-RLLTGHKAPVYALSFSVCGRFLASAGG-DGNVHMWDLSNG--  618 (711)
Q Consensus       550 ------v~~sp~~~~latgs~-Dg~I~iwD~~~~~~v-~~~~~h~~~I~~la~spdg~~Lasgs~-Dg~I~iwDl~sg--  618 (711)
                            +.+++++.+++.... .+.+.+++...+... ....++...+..++|+++|+++++++. +..+.+||..++  
T Consensus       162 ~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~  241 (426)
T d1hzua2         162 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRL  241 (426)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEE
T ss_pred             CCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccE
Confidence                  444444444444332 334445554444322 223356677888999999988776643 334445544332  


Q ss_pred             ----------------------------------------------------eEEEEeeCCCCCEEEEEEeCCCCEEEE-
Q psy14440        619 ----------------------------------------------------HLLTLLTGHTDVVRALCFSRDGNILAS-  645 (711)
Q Consensus       619 ----------------------------------------------------~~i~~l~~h~~~V~sl~fspdg~~Las-  645 (711)
                                                                          +....+.+|...+.+++|+|||++|++ 
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~  321 (426)
T d1hzua2         242 SALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVD  321 (426)
T ss_dssp             EEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEEC
T ss_pred             EEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEe
Confidence                                                                445566778888999999999999994 


Q ss_pred             ------EeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeee
Q psy14440        646 ------SGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILL  708 (711)
Q Consensus       646 ------gs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~ll  708 (711)
                            ++.|++|+|||+.++.........             .. ......+...|.+++||+||..+
T Consensus       322 ~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~-------------~~-~~~~~~~~~rv~~~~fSpDGk~i  376 (426)
T d1hzua2         322 TTFNPDARISQSVAVFDLKNLDAKYQVLPI-------------AE-WADLGEGAKRVVQPEYNKRGDEV  376 (426)
T ss_dssp             CTTCSSHHHHTCEEEEETTCTTSCCEEECH-------------HH-HHCCCSSCCCEEEEEECSSSSEE
T ss_pred             ecCCCCcccCCEEEEEECCCCCcCeEEecc-------------ch-hcccCCCCccEEEEEECCCCCEE
Confidence                  556889999999876542211000             00 01133345569999999999754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=3.5e-20  Score=201.64  Aligned_cols=281  Identities=14%  Similarity=0.021  Sum_probs=199.8

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee----------------eccCccccccc-cccCCcEE
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKA----------------MKSSDQLQDIE-MECDDILV  442 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~----------------~~~~~~~~~l~-~~~~d~~i  442 (711)
                      +.++..| ..+..++|||||++|++++.|++|++||+.+.+...                ..+++++..++ ....++.+
T Consensus        55 ~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v  133 (426)
T d1hzua2          55 VKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQF  133 (426)
T ss_dssp             EEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEE
T ss_pred             EEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeE
Confidence            4455554 569999999999999999999999999998765221                22334555554 44578999


Q ss_pred             EEEecCCCeeEEEeecccCCE-----------EEEEEcCCCCEEEEEeC-CCeEEEEECCCCeE-EEEEecCCCCEEEEE
Q psy14440        443 RIMDERNAETTRTLVGHEGPV-----------RKLSFSPDRSLLLSCSQ-DNTIRLWSLLLWRC-LVVYKGHGHPVWDIK  509 (711)
Q Consensus       443 ~i~d~~~~~~~~~l~~h~~~V-----------~~l~fspdg~~L~s~s~-Dg~V~iwdl~t~~~-~~~~~~h~~~V~~v~  509 (711)
                      .+||..++.....+.+|...+           ..+.+++++..++.... .+.+.+++...... ......+...++++.
T Consensus       134 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (426)
T d1hzua2         134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG  213 (426)
T ss_dssp             EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEE
T ss_pred             EEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeee
Confidence            999999999888877665544           44555555555444333 34455555544332 223345788899999


Q ss_pred             EcCCCCEEEEEE-CCCeEEEEECCCCceeEEeec--CCCCeeEEEEcCCCCE-EE--EEEcCCcEEEEECCC-------C
Q psy14440        510 FSPHGYYFASAG-HDRMARLWATDSYHPLRLFVG--HYSDVDCVQFHPNSNY-VA--TGSSDRTIRLWDCVT-------G  576 (711)
Q Consensus       510 ~sp~g~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~--h~~~V~~v~~sp~~~~-la--tgs~Dg~I~iwD~~~-------~  576 (711)
                      |+++++++++++ .+..+.+|+..+++.+..+..  +.....+..+...+.. +.  ..+.|+.+.+|+...       +
T Consensus       214 ~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~  293 (426)
T d1hzua2         214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW  293 (426)
T ss_dssp             ECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBT
T ss_pred             ECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccc
Confidence            999999877776 566788999999888776653  2222334444433332 22  233577888887654       4


Q ss_pred             cEEEEeeCCCCCeEEEEEecCCCEEEE-------EeCCCcEEEEECCCCeEEEEe---------eCCCCCEEEEEEeCCC
Q psy14440        577 SHVRLLTGHKAPVYALSFSVCGRFLAS-------AGGDGNVHMWDLSNGHLLTLL---------TGHTDVVRALCFSRDG  640 (711)
Q Consensus       577 ~~v~~~~~h~~~I~~la~spdg~~Las-------gs~Dg~I~iwDl~sg~~i~~l---------~~h~~~V~sl~fspdg  640 (711)
                      +....+.+|...+..++|+|||++|++       ++.|++|+|||+.+++...++         ..|...|.+++|||||
T Consensus       294 ~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDG  373 (426)
T d1hzua2         294 KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG  373 (426)
T ss_dssp             SEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSS
T ss_pred             eEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCC
Confidence            788899999999999999999999995       456789999999998765544         2456679999999999


Q ss_pred             CEEE-EE----eCCCcEEEEeCCCCC
Q psy14440        641 NILA-SS----GQDCSVKLWDFAKLS  661 (711)
Q Consensus       641 ~~La-sg----s~Dg~V~iWdl~~~~  661 (711)
                      ++++ ++    +.+|.|+|||.++.+
T Consensus       374 k~i~vs~~~~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         374 DEVWFSVWNGKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             SEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred             CEEEEEEecCCCCCCeEEEEECCCCe
Confidence            9764 33    357889999998754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=3.5e-20  Score=191.61  Aligned_cols=226  Identities=9%  Similarity=0.070  Sum_probs=177.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeec--ccCCEEEEEEcCCCCEEE-
Q psy14440        400 SILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVG--HEGPVRKLSFSPDRSLLL-  476 (711)
Q Consensus       400 ~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~--h~~~V~~l~fspdg~~L~-  476 (711)
                      .++++++.|+.|+|||+.+                               ++.+..+..  +...+.+++|+|||++++ 
T Consensus         2 ~~~vt~~~d~~v~v~D~~s-------------------------------~~~~~~i~~~~~~~~~~~i~~spDg~~l~v   50 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK-------------------------------MAVDKVITIADAGPTPMVPMVAPGGRIAYA   50 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT-------------------------------TEEEEEEECTTCTTCCCCEEECTTSSEEEE
T ss_pred             eEEEEEcCCCEEEEEECCC-------------------------------CeEEEEEECCCCCCCccEEEECCCCCEEEE
Confidence            4788999999999998854                               344444443  345678999999999875 


Q ss_pred             EEeCCCeEEEEECCCCeEEEEEecCCC-----CEEEEEEcCCCCEEEEEE------------CCCeEEEEECCCCceeEE
Q psy14440        477 SCSQDNTIRLWSLLLWRCLVVYKGHGH-----PVWDIKFSPHGYYFASAG------------HDRMARLWATDSYHPLRL  539 (711)
Q Consensus       477 s~s~Dg~V~iwdl~t~~~~~~~~~h~~-----~V~~v~~sp~g~~l~sgs------------~Dg~i~lwd~~~~~~~~~  539 (711)
                      +++.++.|.+||+.+++.+..+..+..     .+..++|+|+++++++++            .+..+.+||..++.....
T Consensus        51 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  130 (337)
T d1pbyb_          51 TVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA  130 (337)
T ss_dssp             EETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE
T ss_pred             EECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEe
Confidence            567899999999999999988876543     345789999999988876            467899999999988887


Q ss_pred             eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEe-------------------------------------
Q psy14440        540 FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLL-------------------------------------  582 (711)
Q Consensus       540 ~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~-------------------------------------  582 (711)
                      +.. ...+.+++|+++|+++++++.  .+.+||..+++....+                                     
T Consensus       131 ~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (337)
T d1pbyb_         131 FEA-PRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK  207 (337)
T ss_dssp             EEC-CSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred             ccc-cCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeee
Confidence            764 456889999999999998864  4677887766544332                                     


Q ss_pred             -----------------------------eCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEE
Q psy14440        583 -----------------------------TGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRA  633 (711)
Q Consensus       583 -----------------------------~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~s  633 (711)
                                                   ..+...+.++++++++.+++++  ++.|++||+.+++.+..+. +...+.+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~  284 (337)
T d1pbyb_         208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYS  284 (337)
T ss_dssp             TSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCE
T ss_pred             ccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEE
Confidence                                         1223345556677778877765  4789999999999998886 5567899


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        634 LCFSRDGNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       634 l~fspdg~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      ++|++||++|++|+.||+|+|||+.+...
T Consensus       285 ~~~s~dG~~l~v~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         285 VNVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             EEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCCcE
Confidence            99999999999999999999999987543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=3.4e-20  Score=202.76  Aligned_cols=279  Identities=14%  Similarity=0.006  Sum_probs=190.2

Q ss_pred             EEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee----------------eccCcccccc-ccccCCcE
Q psy14440        379 ACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKA----------------MKSSDQLQDI-EMECDDIL  441 (711)
Q Consensus       379 ~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~----------------~~~~~~~~~l-~~~~~d~~  441 (711)
                      +..++..| ..+..++|||||++|++++.||+|++||+.+.+...                ..+++++..+ +.+..++.
T Consensus        54 v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~  132 (432)
T d1qksa2          54 IKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQ  132 (432)
T ss_dssp             EEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred             EEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCe
Confidence            34455444 579999999999999999999999999997654211                1223455554 56677899


Q ss_pred             EEEEecCCCeeEEEeecc-----------cCCEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEEe-cCCCCEEEE
Q psy14440        442 VRIMDERNAETTRTLVGH-----------EGPVRKLSFSPDRSLL-LSCSQDNTIRLWSLLLWRCLVVYK-GHGHPVWDI  508 (711)
Q Consensus       442 i~i~d~~~~~~~~~l~~h-----------~~~V~~l~fspdg~~L-~s~s~Dg~V~iwdl~t~~~~~~~~-~h~~~V~~v  508 (711)
                      +.+||..+++....+..|           .+....+.++++|..+ ++.+.++.|.+|+..+++...... .+...+.++
T Consensus       133 v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~  212 (432)
T d1qksa2         133 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG  212 (432)
T ss_dssp             EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEE
T ss_pred             EEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccc
Confidence            999999999988877654           3456788999999876 455678999999998877655433 356778999


Q ss_pred             EEcCCCCEEEEEE-CCCeEEEEECCCCceeEEeec-----CCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCc----
Q psy14440        509 KFSPHGYYFASAG-HDRMARLWATDSYHPLRLFVG-----HYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGS----  577 (711)
Q Consensus       509 ~~sp~g~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~-----h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~----  577 (711)
                      +|+|+|+++++++ .++.+.++|.++++.+..+..     |........+...+...++.. .++.|.+|+.....    
T Consensus       213 ~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~  292 (432)
T d1qksa2         213 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN  292 (432)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred             eECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccccccc
Confidence            9999999877776 456888999988776655432     333333444433333333332 36677777654321    


Q ss_pred             ---EEEEeeCCCC-------------------------CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCC
Q psy14440        578 ---HVRLLTGHKA-------------------------PVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTD  629 (711)
Q Consensus       578 ---~v~~~~~h~~-------------------------~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~  629 (711)
                         ....+..+.+                         ...++++ +|++.|++++.|+.+++||+.++..   +..|..
T Consensus       293 ~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~---l~~~~~  368 (432)
T d1qksa2         293 AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAG---ITEGQP  368 (432)
T ss_dssp             BTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHT---CCSSCC
T ss_pred             ccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEecccccccc---cCCCCC
Confidence               2222221111                         1122333 6677777777777888887655432   235677


Q ss_pred             CEEEEEEeCCCCEEEEEe-----CCCcEEEEeCCCCCC
Q psy14440        630 VVRALCFSRDGNILASSG-----QDCSVKLWDFAKLSD  662 (711)
Q Consensus       630 ~V~sl~fspdg~~Lasgs-----~Dg~V~iWdl~~~~~  662 (711)
                      .|.+++||+||++++.+.     .+|.|+|||.+++..
T Consensus       369 ~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         369 RVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             EEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             cEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence            899999999999876553     468899999987643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=1.6e-19  Score=197.33  Aligned_cols=194  Identities=11%  Similarity=0.021  Sum_probs=149.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEE
Q psy14440        399 VSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSC  478 (711)
Q Consensus       399 g~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~  478 (711)
                      .-++++.+.+|.|.|||..                               +++.+..+..|. .+..++|||||++|+++
T Consensus        32 ~~~~v~~~d~g~v~v~D~~-------------------------------t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~   79 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGS-------------------------------TYEIKTVLDTGY-AVHISRLSASGRYLFVI   79 (432)
T ss_dssp             GEEEEEETTTTEEEEEETT-------------------------------TCCEEEEEECSS-CEEEEEECTTSCEEEEE
T ss_pred             cEEEEEEcCCCEEEEEECC-------------------------------CCcEEEEEeCCC-CeeEEEECCCCCEEEEE
Confidence            3345777778888888774                               555666776664 58999999999999999


Q ss_pred             eCCCeEEEEECCCCeE--EEEE---ecCCCCEEEEEEcCCCCEE-EEEECCCeEEEEECCCCceeEEeecC---------
Q psy14440        479 SQDNTIRLWSLLLWRC--LVVY---KGHGHPVWDIKFSPHGYYF-ASAGHDRMARLWATDSYHPLRLFVGH---------  543 (711)
Q Consensus       479 s~Dg~V~iwdl~t~~~--~~~~---~~h~~~V~~v~~sp~g~~l-~sgs~Dg~i~lwd~~~~~~~~~~~~h---------  543 (711)
                      +.||+|++||+.+++.  ...+   .+|.+.+++..|+|||+++ ++++.++++++||..+++.+..+..|         
T Consensus        80 s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~  159 (432)
T d1qksa2          80 GRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY  159 (432)
T ss_dssp             ETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred             cCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceec
Confidence            9999999999987653  2333   2455667777888999975 67888999999999999988877643         


Q ss_pred             --CCCeeEEEEcCCCCEEE-EEEcCCcEEEEECCCCcEEEEee-CCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCC
Q psy14440        544 --YSDVDCVQFHPNSNYVA-TGSSDRTIRLWDCVTGSHVRLLT-GHKAPVYALSFSVCGRFLASAGG-DGNVHMWDLSNG  618 (711)
Q Consensus       544 --~~~V~~v~~sp~~~~la-tgs~Dg~I~iwD~~~~~~v~~~~-~h~~~I~~la~spdg~~Lasgs~-Dg~I~iwDl~sg  618 (711)
                        ......+.+++++.+++ +...++.|.+||..+++...... .+...+.+++|+|+|+++++++. ++.|.++|..++
T Consensus       160 ~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         160 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             cCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence              44566788899888765 45567999999999887655443 35567889999999998887765 457889998887


Q ss_pred             eEEEEe
Q psy14440        619 HLLTLL  624 (711)
Q Consensus       619 ~~i~~l  624 (711)
                      +.+..+
T Consensus       240 ~~~~~~  245 (432)
T d1qksa2         240 KLVAIE  245 (432)
T ss_dssp             EEEEEE
T ss_pred             eEEEEe
Confidence            766554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.84  E-value=3.2e-18  Score=174.12  Aligned_cols=245  Identities=10%  Similarity=0.066  Sum_probs=194.5

Q ss_pred             cccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCC
Q psy14440        435 MECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLL-SCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH  513 (711)
Q Consensus       435 ~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~-s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~  513 (711)
                      ....++.|.+||..+++.++++... +.+.+++|+|||++|+ +++.+++|++||+.+++.+..+..+. .+..+.|+++
T Consensus         7 ~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~   84 (301)
T d1l0qa2           7 ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPD   84 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTT
T ss_pred             EECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccc
Confidence            4567889999999999998888754 4578999999999875 66678999999999999999998765 4688999999


Q ss_pred             CCEEE-EEECCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEeeCCCCCeEE
Q psy14440        514 GYYFA-SAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSHVRLLTGHKAPVYA  591 (711)
Q Consensus       514 g~~l~-sgs~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~v~~~~~h~~~I~~  591 (711)
                      +.+++ ++..++.+.+|+..+++....+.. .....+++|++++++++.++ .++.+.+|+..++..+..+..+ ..+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  162 (301)
T d1l0qa2          85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKG  162 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEE
T ss_pred             cccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceE
Confidence            98655 455778999999999888877764 45678999999999876554 5788999999999988888754 45789


Q ss_pred             EEEecCCCEEEEEeCC-CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEeCCCCCCccCcc
Q psy14440        592 LSFSVCGRFLASAGGD-GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ---DCSVKLWDFAKLSDEVGTE  667 (711)
Q Consensus       592 la~spdg~~Lasgs~D-g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~---Dg~V~iWdl~~~~~~~~~~  667 (711)
                      ++++++++++++++.+ +.+.+|+....+....+..+ ..+.+++|+++++.++.++.   +++|++||+.+.       
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~-------  234 (301)
T d1l0qa2         163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-------  234 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-------
T ss_pred             EEeeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCC-------
Confidence            9999999988888765 67778888888777776654 55788999999998876643   468999998652       


Q ss_pred             ccccccccccccccccceeeecccCCcceEEEEEccCCeee
Q psy14440        668 EVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILL  708 (711)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~ll  708 (711)
                                      .++..+... ..+.+|+|++||..|
T Consensus       235 ----------------~~~~~~~~~-~~~~~va~spdg~~l  258 (301)
T d1l0qa2         235 ----------------KITARIPVG-PDPAGIAVTPDGKKV  258 (301)
T ss_dssp             ----------------EEEEEEECC-SSEEEEEECTTSSEE
T ss_pred             ----------------eEEEEEcCC-CCEEEEEEeCCCCEE
Confidence                            223334433 346789999998744

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=2e-19  Score=186.60  Aligned_cols=236  Identities=10%  Similarity=0.018  Sum_probs=170.0

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEee-cccCCEEEEEEcCC
Q psy14440        393 AEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV-GHEGPVRKLSFSPD  471 (711)
Q Consensus       393 l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~V~~l~fspd  471 (711)
                      ++|++++++|++++.++.|.|||+.+                               ++.++++. .|...+.+++|+||
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t-------------------------------~~~~~t~~~~~~~~p~~l~~spD   50 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVAS-------------------------------DTVYKSCVMPDKFGPGTAMMAPD   50 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTT-------------------------------TEEEEEEECSSCCSSCEEEECTT
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCC-------------------------------CCEEEEEEcCCCCCcceEEECCC
Confidence            47899999999999999999999854                               34455554 45566789999999


Q ss_pred             CCEEE-EEeCCCeEEEEECCCCeEEEEEecCC------CCEEEEEEcCCCCEEEEEE------------CCCeEEEEECC
Q psy14440        472 RSLLL-SCSQDNTIRLWSLLLWRCLVVYKGHG------HPVWDIKFSPHGYYFASAG------------HDRMARLWATD  532 (711)
Q Consensus       472 g~~L~-s~s~Dg~V~iwdl~t~~~~~~~~~h~------~~V~~v~~sp~g~~l~sgs------------~Dg~i~lwd~~  532 (711)
                      |++++ +++.++.|++||+.+++.+..+....      ..+..++|+++|+++++++            .++.+.+|+..
T Consensus        51 G~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~  130 (346)
T d1jmxb_          51 NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA  130 (346)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred             CCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecc
Confidence            99875 55578999999999999988776432      2356789999999888765            47788999887


Q ss_pred             CCceeEEeec--CCCCeeEEEEcCCCCEEEE-------------------------------------------------
Q psy14440        533 SYHPLRLFVG--HYSDVDCVQFHPNSNYVAT-------------------------------------------------  561 (711)
Q Consensus       533 ~~~~~~~~~~--h~~~V~~v~~sp~~~~lat-------------------------------------------------  561 (711)
                      +++....+..  ....+..+.+++++..+++                                                 
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (346)
T d1jmxb_         131 DGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML  210 (346)
T ss_dssp             GGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred             cceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEee
Confidence            7654332221  1122333333333332222                                                 


Q ss_pred             ---------------EEcCCcEEEEECCCCcEEE-EeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee
Q psy14440        562 ---------------GSSDRTIRLWDCVTGSHVR-LLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLT  625 (711)
Q Consensus       562 ---------------gs~Dg~I~iwD~~~~~~v~-~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~  625 (711)
                                     +..++.+.+||+.++.... .+..|...+.++.+++++.+++++.. +.|.+||+.+++.+..+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~  289 (346)
T d1jmxb_         211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN  289 (346)
T ss_dssp             EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE
T ss_pred             eeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc
Confidence                           1122334555555554332 23346667778888888888877654 579999999999988876


Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        626 GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       626 ~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                       +...+.+++|++||++|++++.||.|+|||+.+.+
T Consensus       290 -~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         290 -LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             -CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence             44568999999999999999999999999998654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=9.5e-18  Score=173.00  Aligned_cols=236  Identities=9%  Similarity=-0.014  Sum_probs=176.2

Q ss_pred             ecCCCceEEEEECCCCCEE-EEEeCCCeEEEEeCCCCceeeec----------------cCccccccccc----------
Q psy14440        384 LNARQQVTCAEISEDVSIL-AVGFSESYIKLWSLVPQKLKAMK----------------SSDQLQDIEME----------  436 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~L-atG~~dg~I~vWdl~~~~~~~~~----------------~~~~~~~l~~~----------  436 (711)
                      ..+...+.+++|+|||+++ ++|+.++.|.+||+.+.++....                .+++...+...          
T Consensus        30 ~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~  109 (337)
T d1pbyb_          30 ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH  109 (337)
T ss_dssp             TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeee
Confidence            3455678899999999987 56778999999999887654321                22222223222          


Q ss_pred             --cCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCC
Q psy14440        437 --CDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG  514 (711)
Q Consensus       437 --~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g  514 (711)
                        ..+..+.+||..+++....+..+ ..+.+++|++||+++++++.+  +.+||..+++....+..+... ....+++++
T Consensus       110 ~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~  185 (337)
T d1pbyb_         110 FEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWE-AETYAQPDV  185 (337)
T ss_dssp             EEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTT-TTTBCCCBC
T ss_pred             ccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCcc-ccceecCCc
Confidence              23567888999999888877754 557899999999999998754  788999999988877643221 111111111


Q ss_pred             ------------------------CEEEEEECCCeEEEEECCCCceeE-EeecCCCCeeEEEEcCCCCEEEEEEcCCcEE
Q psy14440        515 ------------------------YYFASAGHDRMARLWATDSYHPLR-LFVGHYSDVDCVQFHPNSNYVATGSSDRTIR  569 (711)
Q Consensus       515 ------------------------~~l~sgs~Dg~i~lwd~~~~~~~~-~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~  569 (711)
                                              ..+..++.++.+.+|+..++.... .+..+...+.++.+++++.+++.+  ++.|+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~  263 (337)
T d1pbyb_         186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLE  263 (337)
T ss_dssp             CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred             ceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEE
Confidence                                    111112334568899998887554 355677788999999999998766  58999


Q ss_pred             EEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC
Q psy14440        570 LWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG  626 (711)
Q Consensus       570 iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~  626 (711)
                      +||+.+++.+..+. +...+.+++|+|||++|++|+.||.|+|||..+++.+.++..
T Consensus       264 v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         264 SFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            99999999998876 566789999999999999999999999999999999988864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.76  E-value=9.6e-16  Score=161.47  Aligned_cols=273  Identities=9%  Similarity=-0.062  Sum_probs=195.8

Q ss_pred             EecCCCceEEEEECCCCCEEEEEe-----CCCeEEEEeCCCCceee---------eccCccccccccc----------cC
Q psy14440        383 LLNARQQVTCAEISEDVSILAVGF-----SESYIKLWSLVPQKLKA---------MKSSDQLQDIEME----------CD  438 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~LatG~-----~dg~I~vWdl~~~~~~~---------~~~~~~~~~l~~~----------~~  438 (711)
                      ...+...+.+++++|||+.+++..     ..+.|.+||..+.++..         +.+++++..+++.          ..
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCccccccc
Confidence            345778899999999999887642     34579999987776542         3445555555543          34


Q ss_pred             CcEEEEEecCCCeeEEEeecccCCE-------EEEEEcCCCCEEEEEe--CCCeEEEEECCCCeEEEEEecCCCCEEEEE
Q psy14440        439 DILVRIMDERNAETTRTLVGHEGPV-------RKLSFSPDRSLLLSCS--QDNTIRLWSLLLWRCLVVYKGHGHPVWDIK  509 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h~~~V-------~~l~fspdg~~L~s~s--~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~  509 (711)
                      ++.+.+||..+++....+..+....       ..+.|+++++.++...  .++.+.+|+..+.+......    ...++.
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  171 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS----SPTCYH  171 (373)
T ss_pred             ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec----cceeEE
Confidence            6789999999999988887776554       4578889998776654  45678999988776654443    456788


Q ss_pred             EcCCCC-EEEEEECCCeEEEEECCCCceeEEeecCC------CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-
Q psy14440        510 FSPHGY-YFASAGHDRMARLWATDSYHPLRLFVGHY------SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRL-  581 (711)
Q Consensus       510 ~sp~g~-~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~------~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~-  581 (711)
                      ++++|+ .+++.+.|+++.+|+...+........+.      .....+.+++++.+ +..+.++.+.+|+..++..... 
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~  250 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKA  250 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEE
Confidence            999886 55788899999999999887766554322      22344555655544 4556789999999887654322 


Q ss_pred             -eeCC----------CCCeEEEEEecCCCEEE----------EEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCC
Q psy14440        582 -LTGH----------KAPVYALSFSVCGRFLA----------SAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDG  640 (711)
Q Consensus       582 -~~~h----------~~~I~~la~spdg~~La----------sgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg  640 (711)
                       ...+          ......+++++++..++          +...++.|.+||..+++.+..+. +...+.+++|++||
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG  329 (373)
T d2madh_         251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDG  329 (373)
T ss_pred             eeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCC
Confidence             2122          12334456666666544          44566789999999999988876 55678999999999


Q ss_pred             C--EEEEEeCCCcEEEEeCCCCC
Q psy14440        641 N--ILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       641 ~--~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      +  ++++++.|++|+|||+.+..
T Consensus       330 ~~~l~vt~~~d~~v~v~D~~tg~  352 (373)
T d2madh_         330 GPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             CEEEEEEeCCCCeEEEEECCCCC
Confidence            8  45788999999999998744

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.8e-15  Score=155.90  Aligned_cols=260  Identities=12%  Similarity=0.159  Sum_probs=176.5

Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEe-
Q psy14440        401 ILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCS-  479 (711)
Q Consensus       401 ~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s-  479 (711)
                      .++++..|+.|+||++....                             .-.......|.+.|.+++|+|||++|++++ 
T Consensus         6 v~v~~~~~~~I~v~~~~~~~-----------------------------~l~~~~~~~~~~~v~~la~spDG~~L~v~~~   56 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG-----------------------------ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR   56 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS-----------------------------CEEEEEEEECSSCCCCEEECTTSSEEEEEET
T ss_pred             EEEECCCCCcEEEEEEcCCC-----------------------------CeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC
Confidence            45677788888888875321                             112233346788999999999999996655 


Q ss_pred             CCCeEEEEECCCCeEEEE---EecCCCCEEEEEEcCCCCEEEEEEC-CCeEEEEECCCCceeEE--eecCCCCeeEEEEc
Q psy14440        480 QDNTIRLWSLLLWRCLVV---YKGHGHPVWDIKFSPHGYYFASAGH-DRMARLWATDSYHPLRL--FVGHYSDVDCVQFH  553 (711)
Q Consensus       480 ~Dg~V~iwdl~t~~~~~~---~~~h~~~V~~v~~sp~g~~l~sgs~-Dg~i~lwd~~~~~~~~~--~~~h~~~V~~v~~s  553 (711)
                      .|+.|++|++........   ...+...+..++|+|+|+++++++. ++.+.+|+.........  ...+...+.++.++
T Consensus        57 ~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s  136 (333)
T d1ri6a_          57 PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS  136 (333)
T ss_dssp             TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC
T ss_pred             CCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEee
Confidence            589999999976532222   2234556778999999999999885 77899998876654433  34567788999999


Q ss_pred             CCCCEEEEEEc-CCcEEEEECCCCcEEEE------eeCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCC----eEE
Q psy14440        554 PNSNYVATGSS-DRTIRLWDCVTGSHVRL------LTGHKAPVYALSFSVCGRFLASAG-GDGNVHMWDLSNG----HLL  621 (711)
Q Consensus       554 p~~~~latgs~-Dg~I~iwD~~~~~~v~~------~~~h~~~I~~la~spdg~~Lasgs-~Dg~I~iwDl~sg----~~i  621 (711)
                      ++++++++++. +..|.+|+.........      ..........++|++++.+++... ..+...+|++...    ...
T Consensus       137 ~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  216 (333)
T d1ri6a_         137 PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV  216 (333)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred             ecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeee
Confidence            99999888875 56799999876543322      123445678999999999887665 4567788876432    222


Q ss_pred             EEee------CCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCc
Q psy14440        622 TLLT------GHTDVVRALCFSRDGNILASS-GQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKAS  694 (711)
Q Consensus       622 ~~l~------~h~~~V~sl~fspdg~~Lasg-s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~  694 (711)
                      ..+.      ........+++++++++++.+ ..++.+.+|++.......                    .+..+.....
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~  276 (333)
T d1ri6a_         217 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL--------------------SKEGFQPTET  276 (333)
T ss_dssp             EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE--------------------EEEEEEECSS
T ss_pred             eeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE--------------------EEEEEeCCCC
Confidence            2222      123457788999999976655 457899999986532211                    1111222233


Q ss_pred             ceEEEEEccCCeeee
Q psy14440        695 PLLHLIFSRRNILLR  709 (711)
Q Consensus       695 pV~~v~Fs~~n~lla  709 (711)
                      .+.+++||+||.+|+
T Consensus       277 ~p~~~a~spDGk~l~  291 (333)
T d1ri6a_         277 QPRGFNVDHSGKYLI  291 (333)
T ss_dssp             SCCCEEECTTSSEEE
T ss_pred             CeeEEEEeCCCCEEE
Confidence            456788888888654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=3.1e-15  Score=154.11  Aligned_cols=254  Identities=14%  Similarity=0.147  Sum_probs=177.5

Q ss_pred             eEEEEEecCCCceEEEEECCCCCEEEEE-eCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEe
Q psy14440        378 IACYTLLNARQQVTCAEISEDVSILAVG-FSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTL  456 (711)
Q Consensus       378 ~~~~tl~~h~~~V~~l~fs~dg~~LatG-~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l  456 (711)
                      .......+|.+.+.+++|||||++|+++ ..|+.|++|++......                           .+ ....
T Consensus        27 l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~---------------------------~~-~~~~   78 (333)
T d1ri6a_          27 LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA---------------------------LT-FAAE   78 (333)
T ss_dssp             EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC---------------------------EE-EEEE
T ss_pred             eEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc---------------------------EE-Eeee
Confidence            4455667888999999999999988555 45899999998643211                           01 1111


Q ss_pred             ecccCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeEEEE--EecCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEECC
Q psy14440        457 VGHEGPVRKLSFSPDRSLLLSCSQ-DNTIRLWSLLLWRCLVV--YKGHGHPVWDIKFSPHGYYFASAG-HDRMARLWATD  532 (711)
Q Consensus       457 ~~h~~~V~~l~fspdg~~L~s~s~-Dg~V~iwdl~t~~~~~~--~~~h~~~V~~v~~sp~g~~l~sgs-~Dg~i~lwd~~  532 (711)
                      ..+...+.+++|+|||++|++++. +++|.+|+.........  ...+...+.++.++++++++++++ .+..+.+|+..
T Consensus        79 ~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~  158 (333)
T d1ri6a_          79 SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS  158 (333)
T ss_dssp             EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEec
Confidence            223445678999999999999885 67899998876654433  345677788999999999888877 45679999987


Q ss_pred             CCceeEE------eecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCc----EEEEee------CCCCCeEEEEEe
Q psy14440        533 SYHPLRL------FVGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGS----HVRLLT------GHKAPVYALSFS  595 (711)
Q Consensus       533 ~~~~~~~------~~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~----~v~~~~------~h~~~I~~la~s  595 (711)
                      .......      ..........++|++++.+++... ..+...+|+.....    ......      ........++++
T Consensus       159 ~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  238 (333)
T d1ri6a_         159 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT  238 (333)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred             cCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEe
Confidence            6543321      123445678999999999887665 45677888765432    111221      123456788999


Q ss_pred             cCCCEEEEE-eCCCcEEEEECCCCeEE---EEeeCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEeCCC
Q psy14440        596 VCGRFLASA-GGDGNVHMWDLSNGHLL---TLLTGHTDVVRALCFSRDGNILASSGQ-DCSVKLWDFAK  659 (711)
Q Consensus       596 pdg~~Lasg-s~Dg~I~iwDl~sg~~i---~~l~~h~~~V~sl~fspdg~~Lasgs~-Dg~V~iWdl~~  659 (711)
                      +++++++.+ ..++.+.+|++......   .....+...+.+++|+|||++|++++. +++|+||++..
T Consensus       239 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         239 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             cccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            999977765 45678999988754322   222334456788999999998877654 68999997754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=2.8e-15  Score=156.29  Aligned_cols=265  Identities=11%  Similarity=-0.025  Sum_probs=178.5

Q ss_pred             EEECCCCCEEEEEe-----CCCeEEEEeCCCCceee---------eccCccccccccc----------cCCcEEEEEecC
Q psy14440        393 AEISEDVSILAVGF-----SESYIKLWSLVPQKLKA---------MKSSDQLQDIEME----------CDDILVRIMDER  448 (711)
Q Consensus       393 l~fs~dg~~LatG~-----~dg~I~vWdl~~~~~~~---------~~~~~~~~~l~~~----------~~d~~i~i~d~~  448 (711)
                      .+.+|||+.+++..     .++.|.+||..+.++..         +..+++...+.+.          ..++.|.+||..
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~   86 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV   86 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence            35678888877653     34568889887766432         2445555555432          336788999998


Q ss_pred             CCeeEEEeecccC-------CEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy14440        449 NAETTRTLVGHEG-------PVRKLSFSPDRSLLLSCS--QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFAS  519 (711)
Q Consensus       449 ~~~~~~~l~~h~~-------~V~~l~fspdg~~L~s~s--~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~s  519 (711)
                      +++....+..+..       ....++|+++++++++++  .+..+.+|+..+++.+..+..+....   .+......+++
T Consensus        87 t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  163 (355)
T d2bbkh_          87 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH---IFPTAPDTFFM  163 (355)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE---EEEEETTEEEE
T ss_pred             CCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce---EeecCCcceEE
Confidence            8888777654432       235679999999888775  46789999999999988877544321   11111223333


Q ss_pred             EECCCeEEEEECCCCceeEEe------ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE--EeeCC------
Q psy14440        520 AGHDRMARLWATDSYHPLRLF------VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR--LLTGH------  585 (711)
Q Consensus       520 gs~Dg~i~lwd~~~~~~~~~~------~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~--~~~~h------  585 (711)
                      .+.|+...++..........+      ..+...+.+..+..++..++.++.++.+++|++..++...  ...++      
T Consensus       164 ~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  243 (355)
T d2bbkh_         164 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  243 (355)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             EcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEe
Confidence            444444444433322222211      1244456677888889999999999999999998876432  12222      


Q ss_pred             ----CCCeEEEEEecCCCEEEEEeCC----------CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCC--EEEEEeCC
Q psy14440        586 ----KAPVYALSFSVCGRFLASAGGD----------GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGN--ILASSGQD  649 (711)
Q Consensus       586 ----~~~I~~la~spdg~~Lasgs~D----------g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~--~Lasgs~D  649 (711)
                          ......+++++++..++....+          +.|.+||..+++.+..+.. ...+.+++|+|||+  ++++++.|
T Consensus       244 ~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d  322 (355)
T d2bbkh_         244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGD  322 (355)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTT
T ss_pred             eeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCC
Confidence                1233458899999988776543          3699999999999888764 34588999999998  45677789


Q ss_pred             CcEEEEeCCCCC
Q psy14440        650 CSVKLWDFAKLS  661 (711)
Q Consensus       650 g~V~iWdl~~~~  661 (711)
                      ++|+|||+.+.+
T Consensus       323 ~~i~v~D~~tg~  334 (355)
T d2bbkh_         323 KTLYIHDAESGE  334 (355)
T ss_dssp             TEEEEEETTTCC
T ss_pred             CEEEEEECCCCC
Confidence            999999998643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.68  E-value=1.3e-15  Score=157.19  Aligned_cols=244  Identities=10%  Similarity=-0.043  Sum_probs=172.6

Q ss_pred             EEEEe-cCCCceEEEEECCCCCEE-EEEeCCCeEEEEeCCCCceee-----------------eccCccccccccc----
Q psy14440        380 CYTLL-NARQQVTCAEISEDVSIL-AVGFSESYIKLWSLVPQKLKA-----------------MKSSDQLQDIEME----  436 (711)
Q Consensus       380 ~~tl~-~h~~~V~~l~fs~dg~~L-atG~~dg~I~vWdl~~~~~~~-----------------~~~~~~~~~l~~~----  436 (711)
                      ..++. .|...+.+++|+|||+++ +++..++.|++||+.+.+...                 +..+.++..+.+.    
T Consensus        31 ~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~  110 (346)
T d1jmxb_          31 YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPT  110 (346)
T ss_dssp             EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEE
T ss_pred             EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCC
Confidence            34443 456678999999999987 556678999999998875432                 1122233333222    


Q ss_pred             --------cCCcEEEEEecCCCeeEEEeecc--cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEE
Q psy14440        437 --------CDDILVRIMDERNAETTRTLVGH--EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVW  506 (711)
Q Consensus       437 --------~~d~~i~i~d~~~~~~~~~l~~h--~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~  506 (711)
                              ..+..+.+|+..+++....+..+  ...+..+.+++++..++++   +.+.+|++.+++.+..+..+.. ..
T Consensus       111 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~  186 (346)
T d1jmxb_         111 QRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNW-NR  186 (346)
T ss_dssp             EECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTC-CC
T ss_pred             cceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCC-cc
Confidence                    23556777777666554443332  2346667777777665543   4589999999988888764432 22


Q ss_pred             EEEEcCCCC--------------------------EEEEEECCCeEEEEECCCCceeE-EeecCCCCeeEEEEcCCCCEE
Q psy14440        507 DIKFSPHGY--------------------------YFASAGHDRMARLWATDSYHPLR-LFVGHYSDVDCVQFHPNSNYV  559 (711)
Q Consensus       507 ~v~~sp~g~--------------------------~l~sgs~Dg~i~lwd~~~~~~~~-~~~~h~~~V~~v~~sp~~~~l  559 (711)
                      .+.+++++.                          .++++..++.+.+|+..++.... .+..|...+.++.+++++.++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (346)
T d1jmxb_         187 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ  266 (346)
T ss_dssp             TTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE
T ss_pred             ceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEE
Confidence            333333332                          23344456678889988876554 455688889999999998888


Q ss_pred             EEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCC
Q psy14440        560 ATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTD  629 (711)
Q Consensus       560 atgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~  629 (711)
                      +.+. ++.|++||..+++.++.+. +...+.+++||+||++|++++.||.|+|||..+++.+..+..+.+
T Consensus       267 ~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         267 IYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             EEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             EEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence            8776 4679999999999988876 445789999999999999999999999999999999999985543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.68  E-value=4.2e-14  Score=148.59  Aligned_cols=242  Identities=9%  Similarity=-0.044  Sum_probs=166.7

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEeCCCCceeeeccCcc---------ccccccccCCc-----------E
Q psy14440        392 CAEISEDVSILAVGF----------SESYIKLWSLVPQKLKAMKSSDQ---------LQDIEMECDDI-----------L  441 (711)
Q Consensus       392 ~l~fs~dg~~LatG~----------~dg~I~vWdl~~~~~~~~~~~~~---------~~~l~~~~~d~-----------~  441 (711)
                      .++|||||++|++++          .++.|+|||..+.+.........         ...+.+..++.           .
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  149 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence            789999999999875          35789999998877543221111         11222333333           3


Q ss_pred             EEEEecCCCeeEEEeecccCCEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCC------CCEEEEEEcCCC
Q psy14440        442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLL-LSCSQDNTIRLWSLLLWRCLVVYKGHG------HPVWDIKFSPHG  514 (711)
Q Consensus       442 i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L-~s~s~Dg~V~iwdl~t~~~~~~~~~h~------~~V~~v~~sp~g  514 (711)
                      +.+|+....+.    ..+.....++.|+++++.+ ++.+.|+++.+|+...+........+.      .....+.+++++
T Consensus       150 ~~~~~~~~~~~----~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (373)
T d2madh_         150 VGLVVQGGSSD----DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG  225 (373)
T ss_pred             eEEeeccCCeE----EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc
Confidence            33344333322    2344456789999998755 678899999999999888776654322      223344556555


Q ss_pred             CEEEEEECCCeEEEEECCCCceeEE--eecC----------CCCeeEEEEcCCCCEE----------EEEEcCCcEEEEE
Q psy14440        515 YYFASAGHDRMARLWATDSYHPLRL--FVGH----------YSDVDCVQFHPNSNYV----------ATGSSDRTIRLWD  572 (711)
Q Consensus       515 ~~l~sgs~Dg~i~lwd~~~~~~~~~--~~~h----------~~~V~~v~~sp~~~~l----------atgs~Dg~I~iwD  572 (711)
                       .++..+.++.+.+|+..+......  ...+          ......+++++++..+          ++...++.|.+||
T Consensus       226 -~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d  304 (373)
T d2madh_         226 -RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT  304 (373)
T ss_pred             -eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEE
Confidence             455667889999999887653322  1111          1223345566655544          4455677899999


Q ss_pred             CCCCcEEEEeeCCCCCeEEEEEecCCCE--EEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCC
Q psy14440        573 CVTGSHVRLLTGHKAPVYALSFSVCGRF--LASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRD  639 (711)
Q Consensus       573 ~~~~~~v~~~~~h~~~I~~la~spdg~~--Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspd  639 (711)
                      ..+++.+..+. +...+.+++|+|||+.  +++++.|+.|+|||+.+|+.+.++..+....+.|++..+
T Consensus       305 ~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         305 GLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            99999988776 6677899999999984  467889999999999999999999988887888887654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=3.4e-14  Score=147.92  Aligned_cols=244  Identities=12%  Similarity=0.043  Sum_probs=165.2

Q ss_pred             eEEEEECCCCCEEEEE----------eCCCeEEEEeCCCCceeee------------------ccCccccccccc--cCC
Q psy14440        390 VTCAEISEDVSILAVG----------FSESYIKLWSLVPQKLKAM------------------KSSDQLQDIEME--CDD  439 (711)
Q Consensus       390 V~~l~fs~dg~~LatG----------~~dg~I~vWdl~~~~~~~~------------------~~~~~~~~l~~~--~~d  439 (711)
                      +..++|||||++|++.          ..|+.|++||+.+.+....                  ..+.+...+.+.  ..+
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  128 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  128 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC
Confidence            3378999999988764          4478999999988765432                  122223333222  345


Q ss_pred             cEEEEEecCCCeeEEEeecccCC-------EEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeEEEEEecCCCCEEEEEEc
Q psy14440        440 ILVRIMDERNAETTRTLVGHEGP-------VRKLSFSPDRSLLLSCS-QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFS  511 (711)
Q Consensus       440 ~~i~i~d~~~~~~~~~l~~h~~~-------V~~l~fspdg~~L~s~s-~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~s  511 (711)
                      ..+.+|+..+++....+..+...       ...+.+++|++.++... .++.+.+++..+..     ..+...+....+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  203 (355)
T d2bbkh_         129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYS  203 (355)
T ss_dssp             CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEE
T ss_pred             ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeecccc
Confidence            67788888888887777654322       22345555555544332 23334444443322     1234445566788


Q ss_pred             CCCCEEEEEECCCeEEEEECCCCceeE--EeecC----------CCCeeEEEEcCCCCEEEEEEcC----------CcEE
Q psy14440        512 PHGYYFASAGHDRMARLWATDSYHPLR--LFVGH----------YSDVDCVQFHPNSNYVATGSSD----------RTIR  569 (711)
Q Consensus       512 p~g~~l~sgs~Dg~i~lwd~~~~~~~~--~~~~h----------~~~V~~v~~sp~~~~latgs~D----------g~I~  569 (711)
                      .++..++.++.++.+++|+...+....  ...++          ......+++++++..++..+.+          ..|.
T Consensus       204 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~  283 (355)
T d2bbkh_         204 QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV  283 (355)
T ss_dssp             TTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred             CCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEE
Confidence            888899999999999999998765422  11111          1234568899999988876644          3699


Q ss_pred             EEECCCCcEEEEeeCCCCCeEEEEEecCCC--EEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCC
Q psy14440        570 LWDCVTGSHVRLLTGHKAPVYALSFSVCGR--FLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRD  639 (711)
Q Consensus       570 iwD~~~~~~v~~~~~h~~~I~~la~spdg~--~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspd  639 (711)
                      +||..+++.+..+.. ...+.+++|+|||+  ++++++.|+.|+|||+.+|+.+.++.++......+.+..+
T Consensus       284 v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         284 VLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             EEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             EEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence            999999998888763 45588999999998  4567778999999999999999999877665555655443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.48  E-value=5.1e-13  Score=140.91  Aligned_cols=243  Identities=11%  Similarity=-0.086  Sum_probs=160.1

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccC-------CEE
Q psy14440        392 CAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEG-------PVR  464 (711)
Q Consensus       392 ~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~-------~V~  464 (711)
                      .++|++||+.|++.+..+                     ..+..+..++.|.+||..+++....+..+..       ...
T Consensus        69 ~~a~spDg~~i~~~~~~~---------------------~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~  127 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSF---------------------ARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH  127 (368)
T ss_dssp             EEEECTTSSCEEEEEEEE---------------------TTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT
T ss_pred             cceECCCCCEEEEEcccC---------------------ccccccccCCeEEEEECCCCcEeeeecCCccceecccCCcc
Confidence            588999999988764210                     0112233344455555555555555443322       224


Q ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEE----
Q psy14440        465 KLSFSPDRSLLLSCS-QDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL----  539 (711)
Q Consensus       465 ~l~fspdg~~L~s~s-~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~----  539 (711)
                      .++|++||++|++++ .+++|.+||+.+++.+..+..+.....   +......++..+.||++.+|+.........    
T Consensus       128 ~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~  204 (368)
T d1mdah_         128 IIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA  204 (368)
T ss_dssp             SEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeec
Confidence            689999999998886 579999999999999988876654321   112345677778888888888765433222    


Q ss_pred             --eecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee--CC----------CCCeEEEEEecCCCEEEEEe
Q psy14440        540 --FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT--GH----------KAPVYALSFSVCGRFLASAG  605 (711)
Q Consensus       540 --~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~--~h----------~~~I~~la~spdg~~Lasgs  605 (711)
                        +..+...+..+.+++++..+++.  ++.+.+++...+.......  .+          .+....+++++++..++...
T Consensus       205 ~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~  282 (368)
T d1mdah_         205 QCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT  282 (368)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             ccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEe
Confidence              22344556677888877665543  5667777776655433221  11          11234578899988876653


Q ss_pred             CC---------CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCC
Q psy14440        606 GD---------GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGN--ILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       606 ~D---------g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~--~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      .+         ..|.+||..+++.+..+.. ...+.+++|++||+  ++++++.|++|+|||..+.+
T Consensus       283 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         283 VEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             cCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            22         3599999999998887763 35688999999997  35667789999999987654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.44  E-value=1.7e-12  Score=141.58  Aligned_cols=146  Identities=14%  Similarity=0.148  Sum_probs=110.6

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCC
Q psy14440        392 CAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPD  471 (711)
Q Consensus       392 ~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspd  471 (711)
                      .+.|.+|++++..  .++.|.+||+.+++...+.                    +.      ..+..|...|.++.||||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~--------------------~~------~~~~~~~~~i~~~~~SpD   72 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFL--------------------EN------STFDEFGHSINDYSISPD   72 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEE--------------------CT------TTTTTSSSCCCEEEECTT
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEE--------------------ch------hhhhhccCccceeEECCC
Confidence            4678999987764  4678999998766543221                    10      123456778999999999


Q ss_pred             CCEEEEEeC---------CCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeec
Q psy14440        472 RSLLLSCSQ---------DNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG  542 (711)
Q Consensus       472 g~~L~s~s~---------Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~  542 (711)
                      |++|+.++.         ++.+.+||+.+++. ..+..|...+..+.|||+|+++|.. .++.+++|+..++...+....
T Consensus        73 g~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~  150 (470)
T d2bgra1          73 GQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWT  150 (470)
T ss_dssp             SSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSC
T ss_pred             CCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeec
Confidence            999998753         56789999998874 4577788999999999999999996 477899999998876664432


Q ss_pred             ------------------CCCCeeEEEEcCCCCEEEEEEcCCc
Q psy14440        543 ------------------HYSDVDCVQFHPNSNYVATGSSDRT  567 (711)
Q Consensus       543 ------------------h~~~V~~v~~sp~~~~latgs~Dg~  567 (711)
                                        ..+....+.|+|||++|++...|.+
T Consensus       151 ~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~  193 (470)
T d2bgra1         151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT  193 (470)
T ss_dssp             CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred             cCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCC
Confidence                              2234567889999999999876533

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.44  E-value=2.7e-13  Score=145.59  Aligned_cols=297  Identities=9%  Similarity=-0.005  Sum_probs=187.8

Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeec--cCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEE
Q psy14440        401 ILAVGFSESYIKLWSLVPQKLKAMK--SSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSC  478 (711)
Q Consensus       401 ~LatG~~dg~I~vWdl~~~~~~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~  478 (711)
                      .+++|+.+|.|+||++.+.++....  ++.+... ..+..+...+++.  ..........|........+++||++|++.
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~-g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~   89 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSAT-GWGITNESKEILG--GDQQYLNGDCHHPHISMTDGRYDGKYLFIN   89 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTT-CTTTSHHHHHHHC--SSSCCSCCCBCCCEEEEETTEEEEEEEEEE
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCE-EEEECCccceEEe--cccccccCcccCCCcceecccCCCCEEEEE
Confidence            3668889999999999877643321  1222111 1111111111111  011111123455566667778999999766


Q ss_pred             e-CCCeEEEEECCCCeEEEEEe-cCCCCEEEEEEcCCCC--EEEEEECCC-----------------eEEEEECCCCcee
Q psy14440        479 S-QDNTIRLWSLLLWRCLVVYK-GHGHPVWDIKFSPHGY--YFASAGHDR-----------------MARLWATDSYHPL  537 (711)
Q Consensus       479 s-~Dg~V~iwdl~t~~~~~~~~-~h~~~V~~v~~sp~g~--~l~sgs~Dg-----------------~i~lwd~~~~~~~  537 (711)
                      . .+++|.++|+.++++...+. .+...+..++|+++|+  |++..+.+.                 .+..+|..+.+..
T Consensus        90 d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~  169 (441)
T d1qnia2          90 DKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA  169 (441)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred             cCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence            5 67899999999999988776 3577899999999987  665555443                 2355788887776


Q ss_pred             EEeecCCCCeeEEEEcCCCCEEEEEEcC-----------------------------------------CcEEEEECCCC
Q psy14440        538 RLFVGHYSDVDCVQFHPNSNYVATGSSD-----------------------------------------RTIRLWDCVTG  576 (711)
Q Consensus       538 ~~~~~h~~~V~~v~~sp~~~~latgs~D-----------------------------------------g~I~iwD~~~~  576 (711)
                      ..+... .....+.|+|+|+++++++.+                                         +.+.+++....
T Consensus       170 ~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~  248 (441)
T d1qnia2         170 WQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES  248 (441)
T ss_dssp             EEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC
T ss_pred             EEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC
Confidence            665533 457899999999999888743                                         23444544555


Q ss_pred             cEEEEeeCCCCCeEEEEEecCCCEEEE-EeCCCcEEEEECCCCe-----------EEEEeeCCCCCEEEEEEeCCCCEEE
Q psy14440        577 SHVRLLTGHKAPVYALSFSVCGRFLAS-AGGDGNVHMWDLSNGH-----------LLTLLTGHTDVVRALCFSRDGNILA  644 (711)
Q Consensus       577 ~~v~~~~~h~~~I~~la~spdg~~Las-gs~Dg~I~iwDl~sg~-----------~i~~l~~h~~~V~sl~fspdg~~La  644 (711)
                      +.++.+...+. ...++++|||+++++ +..+++|.|||+.+..           .+.-.....-.....+|+++|+.+.
T Consensus       249 ~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yt  327 (441)
T d1qnia2         249 EFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYT  327 (441)
T ss_dssp             SSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEE
T ss_pred             ceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEE
Confidence            55666655444 467899999998765 5678999999986521           1111111112345568999999999


Q ss_pred             EEeCCCcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCeeee-C
Q psy14440        645 SSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR-G  710 (711)
Q Consensus       645 sgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla-G  710 (711)
                      +.+.|..|..|++.........+..        +..-....+.-..+|...+.+..|++||.+|+ |
T Consensus       328 s~~~ds~v~kw~~~~~~~~~~~~~~--------~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         328 TLFIDSQVCKWNIADAIKHYNGDRV--------NYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             EETTTTEEEEEEHHHHHHHHTTCCC--------CCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             cccccceEEEeccchhhhhhccCCC--------ceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence            9999999999998532211111100        00001111222357777888889999999998 5

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.27  E-value=4.3e-11  Score=125.78  Aligned_cols=233  Identities=7%  Similarity=-0.100  Sum_probs=154.8

Q ss_pred             EEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeEEEEEecCCC-------CE
Q psy14440        443 RIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCS----------QDNTIRLWSLLLWRCLVVYKGHGH-------PV  505 (711)
Q Consensus       443 ~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s----------~Dg~V~iwdl~t~~~~~~~~~h~~-------~V  505 (711)
                      .+||..+++....+.++..+  .++|+|||+.|++++          .|++|++||..+++.+..+..+..       ..
T Consensus        49 ~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p  126 (368)
T d1mdah_          49 WVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV  126 (368)
T ss_dssp             EEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred             EEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCc
Confidence            34455667777777666655  589999999988764          377899999999999888765432       23


Q ss_pred             EEEEEcCCCCEEEEEE-CCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE---
Q psy14440        506 WDIKFSPHGYYFASAG-HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRL---  581 (711)
Q Consensus       506 ~~v~~sp~g~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~---  581 (711)
                      ..++|+|+|++++++. .++.+.+||+.+++.++.+..+.....   +......++..+.||++.+|++........   
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~  203 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeee
Confidence            4689999999988776 579999999999998888776544321   112345667777889988888776543322   


Q ss_pred             ---eeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEe--eCCC----------CCEEEEEEeCCCCEEEEE
Q psy14440        582 ---LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLL--TGHT----------DVVRALCFSRDGNILASS  646 (711)
Q Consensus       582 ---~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l--~~h~----------~~V~sl~fspdg~~Lasg  646 (711)
                         +..+...+....+++++..+++.  .+.++++++..+......  ..+.          +....+++++++..++..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~  281 (368)
T d1mdah_         204 AQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL  281 (368)
T ss_dssp             CCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             cccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEE
Confidence               22344556677888888766654  456777777665443222  1111          122357889988877665


Q ss_pred             eCC---------CcEEEEeCCCCCCccCccccccccccccccccccceeeecccCCcceEEEEEccCCe
Q psy14440        647 GQD---------CSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNI  706 (711)
Q Consensus       647 s~D---------g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~  706 (711)
                      ..+         +.|.+||..+...                       +..+. ....+.+++||+|+.
T Consensus       282 ~~~~~~~~~~~~~~v~v~D~~t~~~-----------------------~~~~~-~~~~~~~~a~spDG~  326 (368)
T d1mdah_         282 TVEHSRSCLAAAENTSSVTASVGQT-----------------------SGPIS-NGHDSDAIIAAQDGA  326 (368)
T ss_dssp             EEECSSCTTSCEEEEEEEESSSCCE-----------------------EECCE-EEEEECEEEECCSSS
T ss_pred             ecCCCceeecCCceEEEEECCCCcE-----------------------eEEec-CCCceeEEEECCCCC
Confidence            332         2588888765432                       22222 124577888888874

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.25  E-value=8.9e-11  Score=127.63  Aligned_cols=275  Identities=12%  Similarity=0.041  Sum_probs=158.5

Q ss_pred             ecCCCceEEEEECCCCCEEEEEeC---------CCeEEEEeCCCCceee----------eccCccccccccccCCcEEEE
Q psy14440        384 LNARQQVTCAEISEDVSILAVGFS---------ESYIKLWSLVPQKLKA----------MKSSDQLQDIEMECDDILVRI  444 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG~~---------dg~I~vWdl~~~~~~~----------~~~~~~~~~l~~~~~d~~i~i  444 (711)
                      ..|...|.++.|||||++||.++.         ++.+.|||+.++++..          ..+++++..++.. .+..+++
T Consensus        58 ~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~  136 (470)
T d2bgra1          58 DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYV  136 (470)
T ss_dssp             TTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEE
T ss_pred             hhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEe-ecccceE
Confidence            345678999999999999998754         5678999998876543          3455667777764 4567889


Q ss_pred             EecCCCeeEEEeecc------------------cCCEEEEEEcCCCCEEEEEeCCCe-EEEEECC---C-----Ce----
Q psy14440        445 MDERNAETTRTLVGH------------------EGPVRKLSFSPDRSLLLSCSQDNT-IRLWSLL---L-----WR----  493 (711)
Q Consensus       445 ~d~~~~~~~~~l~~h------------------~~~V~~l~fspdg~~L~s~s~Dg~-V~iwdl~---t-----~~----  493 (711)
                      |+..+++..+....+                  .+...++.|||||++|+....|.+ |..|++.   .     ..    
T Consensus       137 ~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~  216 (470)
T d2bgra1         137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV  216 (470)
T ss_dssp             ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred             EECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeee
Confidence            998887766544322                  233456889999999999876533 4444321   0     00    


Q ss_pred             ------------EEEEEe----------------------cCCCCEEEEEEcCCCCEEEEEE-CCC---eEEEE--ECCC
Q psy14440        494 ------------CLVVYK----------------------GHGHPVWDIKFSPHGYYFASAG-HDR---MARLW--ATDS  533 (711)
Q Consensus       494 ------------~~~~~~----------------------~h~~~V~~v~~sp~g~~l~sgs-~Dg---~i~lw--d~~~  533 (711)
                                  .+..+.                      .....+..+.|.+++..++... ..+   .+.+|  |..+
T Consensus       217 ~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~t  296 (470)
T d2bgra1         217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (470)
T ss_dssp             ECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             ccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCC
Confidence                        011111                      0122345677887776555432 222   23334  4444


Q ss_pred             CceeEEee-------------cCCCCeeEEEEcCCCCEEEEEEcCCcEEEE--ECCCCcEEEEeeCCCCCeEEEEEecCC
Q psy14440        534 YHPLRLFV-------------GHYSDVDCVQFHPNSNYVATGSSDRTIRLW--DCVTGSHVRLLTGHKAPVYALSFSVCG  598 (711)
Q Consensus       534 ~~~~~~~~-------------~h~~~V~~v~~sp~~~~latgs~Dg~I~iw--D~~~~~~v~~~~~h~~~I~~la~spdg  598 (711)
                      +.......             .+........+..++.+++.+..||..+||  +...+ ..+.+..+...|..+ ++.++
T Consensus       297 g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~-~~~~lt~g~~~v~~~-~~~d~  374 (470)
T d2bgra1         297 GRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK-DCTFITKGTWEVIGI-EALTS  374 (470)
T ss_dssp             TEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS-CCEESCCSSSCEEEE-EEECS
T ss_pred             CcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCC-ceeeeccCCeeEEEE-EEECC
Confidence            43322211             112222222223333445666677765554  55444 445555556667776 44445


Q ss_pred             CEE-EEEeCCC------cEEEEECCCCeEEEEe----eCCCCCEEEEEEeCCCCEEEE-Ee--CCCcEEEEeCCCCC
Q psy14440        599 RFL-ASAGGDG------NVHMWDLSNGHLLTLL----TGHTDVVRALCFSRDGNILAS-SG--QDCSVKLWDFAKLS  661 (711)
Q Consensus       599 ~~L-asgs~Dg------~I~iwDl~sg~~i~~l----~~h~~~V~sl~fspdg~~Las-gs--~Dg~V~iWdl~~~~  661 (711)
                      +.+ ++++.++      .|+-.++..+.....+    .+|...+.+++|||||++++. ++  ..-.+++|+..+..
T Consensus       375 ~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~  451 (470)
T d2bgra1         375 DYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDK  451 (470)
T ss_dssp             SEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred             CEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCC
Confidence            544 4444332      1444455554444443    367788999999999998763 33  33458999877643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.23  E-value=9.5e-11  Score=125.45  Aligned_cols=233  Identities=11%  Similarity=0.038  Sum_probs=158.2

Q ss_pred             ecCCCceEEEEECCCCCEEEEE-eCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEe-ecccC
Q psy14440        384 LNARQQVTCAEISEDVSILAVG-FSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTL-VGHEG  461 (711)
Q Consensus       384 ~~h~~~V~~l~fs~dg~~LatG-~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l-~~h~~  461 (711)
                      ..|.-.+.+..+++||++|++. ..++.|.+||+.+.+                               ....+ ..+..
T Consensus        68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k-------------------------------~~~ii~iP~g~  116 (441)
T d1qnia2          68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMK-------------------------------TDKITHIPNVQ  116 (441)
T ss_dssp             CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTE-------------------------------EEEEEECTTCC
T ss_pred             cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCc-------------------------------EeeEEecCCCC
Confidence            3456667777889999988665 467788888886543                               33322 23456


Q ss_pred             CEEEEEEcCCCC--EEEEEeCCC-----------------eEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEEC
Q psy14440        462 PVRKLSFSPDRS--LLLSCSQDN-----------------TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH  522 (711)
Q Consensus       462 ~V~~l~fspdg~--~L~s~s~Dg-----------------~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~  522 (711)
                      .+.+++|+++|+  +++..+.+.                 .+..+|..+.+....+... .....+.|+|+|+++++++.
T Consensus       117 gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~  195 (441)
T d1qnia2         117 AIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCY  195 (441)
T ss_dssp             CEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEES
T ss_pred             CccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEec
Confidence            789999999998  444444332                 2356788887777766643 35678999999998888764


Q ss_pred             C-----------------------------------------CeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEE
Q psy14440        523 D-----------------------------------------RMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVAT  561 (711)
Q Consensus       523 D-----------------------------------------g~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~lat  561 (711)
                      +                                         +.+.+++....+.++.+....+ ...+.++|||+|+++
T Consensus       196 nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~  274 (441)
T d1qnia2         196 NSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIA  274 (441)
T ss_dssp             CTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEE
T ss_pred             CCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEE
Confidence            3                                         3444444444455555554433 578999999999765


Q ss_pred             -EEcCCcEEEEECCCCcE-----------EEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC----------Ce
Q psy14440        562 -GSSDRTIRLWDCVTGSH-----------VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN----------GH  619 (711)
Q Consensus       562 -gs~Dg~I~iwD~~~~~~-----------v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s----------g~  619 (711)
                       +..+++|.+||+.+...           +.-.....-.....+|+++|..+.+...|..|..|++..          ..
T Consensus       275 ~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~  354 (441)
T d1qnia2         275 NGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNY  354 (441)
T ss_dssp             ECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCC
T ss_pred             eCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCce
Confidence             56799999999865221           111111112234568999999889999999999999741          23


Q ss_pred             EEEEe-----eCCCCCEEEEEEeCCCCEEEEEeCC
Q psy14440        620 LLTLL-----TGHTDVVRALCFSRDGNILASSGQD  649 (711)
Q Consensus       620 ~i~~l-----~~h~~~V~sl~fspdg~~Lasgs~D  649 (711)
                      .+..+     .||...+.+.+++|||++|++++.-
T Consensus       355 v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~  389 (441)
T d1qnia2         355 IRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKF  389 (441)
T ss_dssp             EEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESC
T ss_pred             eEeccccccCCCCCccccccccCCCCcEEEecCcc
Confidence            44444     4666666677899999999999543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.18  E-value=2.3e-09  Score=107.17  Aligned_cols=237  Identities=9%  Similarity=0.023  Sum_probs=158.5

Q ss_pred             CceEEEEECCCCCEEEEE-eCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEE
Q psy14440        388 QQVTCAEISEDVSILAVG-FSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKL  466 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG-~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l  466 (711)
                      -.-..++++++|++.++. +..+.|..++..+....                              .....+ .....++
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~------------------------------~~~~~~-~~~p~gv   62 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT------------------------------VLPFNG-LYQPQGL   62 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEE------------------------------ECCCCS-CCSCCCE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE------------------------------EeccCC-ccCceEE
Confidence            345899999999976654 44566666665322111                              111111 1234678


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeecCCCC
Q psy14440        467 SFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSD  546 (711)
Q Consensus       467 ~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~h~~~  546 (711)
                      +++++++.+++....+.+++++-.+...+....+ ....+++++.++++++++-..+..+..++................
T Consensus        63 av~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (260)
T d1rwia_          63 AVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLND  141 (260)
T ss_dssp             EECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCS
T ss_pred             EEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeeeeeecccCC
Confidence            8999998777776666677766555544433332 356789999999998888777777888877654433322233455


Q ss_pred             eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeC
Q psy14440        547 VDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTG  626 (711)
Q Consensus       547 V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~  626 (711)
                      ..+++++++++.+++...++.|..+|.............-.....|+++++|+++++....+.|..++............
T Consensus       142 p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~  221 (260)
T d1rwia_         142 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT  221 (260)
T ss_dssp             CCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCC
T ss_pred             cceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccC
Confidence            68999999999888888888999999776544333334556678999999999888888888999898654432221122


Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy14440        627 HTDVVRALCFSRDGNILASSGQDCSVKLWD  656 (711)
Q Consensus       627 h~~~V~sl~fspdg~~Lasgs~Dg~V~iWd  656 (711)
                      .-....+|+++++|+++++-..+++|+..+
T Consensus       222 ~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         222 GLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             CCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            235678999999999888767677666544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=4.8e-08  Score=98.30  Aligned_cols=242  Identities=9%  Similarity=0.174  Sum_probs=168.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEE
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSF  468 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~f  468 (711)
                      .-..++++++|+++++-..+..|++|+.++.-+.........                          .+....-..+++
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~--------------------------~~~~~~p~~~~~   77 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKR--------------------------DSQLLYPNRVAV   77 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSS--------------------------TTCBSSEEEEEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCC--------------------------cccccccccccc
Confidence            367999999999988888888999999765433222110000                          001112234444


Q ss_pred             cCCC-CEEEEE-eCCCeEEEEECCCCeEEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEee--cC
Q psy14440        469 SPDR-SLLLSC-SQDNTIRLWSLLLWRCLVVYK-GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFV--GH  543 (711)
Q Consensus       469 spdg-~~L~s~-s~Dg~V~iwdl~t~~~~~~~~-~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~h  543 (711)
                      ..+. ..+++. +.++.|.+++.. +.....+. ........+++.++|.++++....+.+.+++.+ ++.+..+.  .+
T Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~  155 (279)
T d1q7fa_          78 VRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKH  155 (279)
T ss_dssp             ETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTT
T ss_pred             cccccccceeccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccccccc
Confidence            4443 333333 345567777764 55555553 335567889999999988888888888888865 45555543  45


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee--CCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeE
Q psy14440        544 YSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT--GHKAPVYALSFSVCGRFLASAGG-DGNVHMWDLSNGHL  620 (711)
Q Consensus       544 ~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~--~h~~~I~~la~spdg~~Lasgs~-Dg~I~iwDl~sg~~  620 (711)
                      ......+++.++++.+++....+.|++||. +|+.+..+.  +.......|+++++|+++++-+. ++.|.+|+ .+|+.
T Consensus       156 ~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~  233 (279)
T d1q7fa_         156 LEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQL  233 (279)
T ss_dssp             CSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCE
T ss_pred             ccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCE
Confidence            667888999999998888888899999995 567777763  34556789999999997776544 45799998 57888


Q ss_pred             EEEeeCC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        621 LTLLTGH--TDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       621 i~~l~~h--~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      +..+...  ....+.|++.+||++++ ++.+++|++|.+....
T Consensus       234 ~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         234 ISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             EEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            8777533  34688999999997655 5578999999998753

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.12  E-value=3.7e-08  Score=103.39  Aligned_cols=260  Identities=9%  Similarity=0.057  Sum_probs=149.3

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-eeeec---cCccccccccccCCcEEEEEecCCCeeEEEeecccC
Q psy14440        386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQK-LKAMK---SSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEG  461 (711)
Q Consensus       386 h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~-~~~~~---~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~  461 (711)
                      ....+.-++|++|+++|.+... +.+..|.+.... +....   .......+.+..+...+.+.         ....+.+
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~---------~a~~~~~  107 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLL---------AAKQPPY  107 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEE---------ECSSTTC
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEE---------EecCCCC
Confidence            3445667999999999987754 557777764321 11110   11111122222211111111         1122455


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEEC-CCeEEEEECCCCceeE--
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH-DRMARLWATDSYHPLR--  538 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~-Dg~i~lwd~~~~~~~~--  538 (711)
                      .|....+..++......+.+...++..    .....-+.....+.++.|+|+|+++++++. ...|.+|+......+.  
T Consensus       108 ~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~  183 (365)
T d1jofa_         108 AVYANPFYKFAGYGNVFSVSETGKLEK----NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV  183 (365)
T ss_dssp             CEEEEEESSSCCEEEEEEECTTCCEEE----EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred             EEEEeEccCCCCcceeEeeeecceecC----cccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeec
Confidence            666666666555443333222222211    111111223445789999999998888764 4578888765432221  


Q ss_pred             -Ee--ecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEee-------------------CCCCCeEEEEEe
Q psy14440        539 -LF--VGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSHVRLLT-------------------GHKAPVYALSFS  595 (711)
Q Consensus       539 -~~--~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~v~~~~-------------------~h~~~I~~la~s  595 (711)
                       ..  .........++|+|+++++++.. .+++|.+||+..++......                   .+......+.++
T Consensus       184 ~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s  263 (365)
T d1jofa_         184 GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT  263 (365)
T ss_dssp             EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC
T ss_pred             cceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEEC
Confidence             11  12356788999999999987666 57899999987654322111                   112235678999


Q ss_pred             cCCCEEEEEeC------CCcEEEEECCCC-eEEEE-----eeCCCCCEEEEEEeC-CCCEEEEEe-CCCcEEEEeCCC
Q psy14440        596 VCGRFLASAGG------DGNVHMWDLSNG-HLLTL-----LTGHTDVVRALCFSR-DGNILASSG-QDCSVKLWDFAK  659 (711)
Q Consensus       596 pdg~~Lasgs~------Dg~I~iwDl~sg-~~i~~-----l~~h~~~V~sl~fsp-dg~~Lasgs-~Dg~V~iWdl~~  659 (711)
                      |||++|+++..      .+.|..|++... .....     ..........+++++ +|++|++++ .++.|.||+++.
T Consensus       264 pdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         264 FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            99999988742      224777777543 22111     112334567799998 799877664 678999998754

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.10  E-value=2.8e-08  Score=101.32  Aligned_cols=225  Identities=10%  Similarity=0.022  Sum_probs=155.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEE
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSF  468 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~f  468 (711)
                      -+..+++++||+++++...++.|..|+..+.                                 ...+....+.+.+++|
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~---------------------------------~~~~~~~~~~~~gla~   75 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN---------------------------------QQIHATVEGKVSGLAF   75 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC---------------------------------EEEEEECSSEEEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC---------------------------------EEEEEcCCCCcceEEE
Confidence            5788999999999999999998888775431                                 1122334567899999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCC--CeEEEEE-ecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEee----
Q psy14440        469 SPDRSLLLSCSQDNTIRLWSLLL--WRCLVVY-KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFV----  541 (711)
Q Consensus       469 spdg~~L~s~s~Dg~V~iwdl~t--~~~~~~~-~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~----  541 (711)
                      ++||+++++...++.+.+|+...  +...... .........+++.++|+++++.+.++.+..++...+.......    
T Consensus        76 ~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~  155 (302)
T d2p4oa1          76 TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML  155 (302)
T ss_dssp             CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGG
T ss_pred             cCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcc
Confidence            99999888888888888887643  2222222 2345678899999999999988889999988888764332221    


Q ss_pred             ------cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE---EEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q psy14440        542 ------GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV---RLLTGHKAPVYALSFSVCGRFLASAGGDGNVHM  612 (711)
Q Consensus       542 ------~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v---~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~i  612 (711)
                            ........+.+.. +..+++.+..+.|..++.......   ..+. .......++++++|+++++...+++|..
T Consensus       156 ~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~  233 (302)
T d2p4oa1         156 ARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVR  233 (302)
T ss_dssp             SCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred             ceeeccCcccccccccccC-CceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEE
Confidence                  1122355666653 334555566888888887654322   1222 2334567999999998888888899999


Q ss_pred             EECCCCeEEEE--eeCCCCCEEEEEE---eCCCCEEEEEeCC
Q psy14440        613 WDLSNGHLLTL--LTGHTDVVRALCF---SRDGNILASSGQD  649 (711)
Q Consensus       613 wDl~sg~~i~~--l~~h~~~V~sl~f---spdg~~Lasgs~D  649 (711)
                      |+.. |+....  ........++++|   ++|++.|+.++..
T Consensus       234 i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         234 IAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             ECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            9865 443333  3334456899999   6688888766544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.10  E-value=4.2e-08  Score=100.75  Aligned_cols=248  Identities=10%  Similarity=0.089  Sum_probs=160.3

Q ss_pred             EecCCCceEEEEECCCCCEEEEEeC-------CCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEE
Q psy14440        383 LLNARQQVTCAEISEDVSILAVGFS-------ESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRT  455 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~LatG~~-------dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  455 (711)
                      +...-...-..+|+++|++.++...       +|.|..|+..+.........                           .
T Consensus        13 v~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------------------------~   65 (314)
T d1pjxa_          13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------------------E   65 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------------------E
T ss_pred             eecCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECC---------------------------c
Confidence            3444455677899999998876433       34566666544332111000                           0


Q ss_pred             eecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC----CCEEEEEEcCCCCEEEEEEC---------
Q psy14440        456 LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHG----HPVWDIKFSPHGYYFASAGH---------  522 (711)
Q Consensus       456 l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~----~~V~~v~~sp~g~~l~sgs~---------  522 (711)
                      .....+.-..++|.++++.|+++...+.|..++..............    ...+++++.++|++.++...         
T Consensus        66 ~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~  145 (314)
T d1pjxa_          66 VNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT  145 (314)
T ss_dssp             ETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC
T ss_pred             cccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCccccccc
Confidence            00112335789999999988888877789999987654332222111    13578999999988777432         


Q ss_pred             ------CCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCC----EE-EEEEcCCcEEEEECCCCcEEE------EeeC-
Q psy14440        523 ------DRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSN----YV-ATGSSDRTIRLWDCVTGSHVR------LLTG-  584 (711)
Q Consensus       523 ------Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~----~l-atgs~Dg~I~iwD~~~~~~v~------~~~~-  584 (711)
                            +|.|..++.+ ++.. .+......-+.++|+++++    +| ++-+..+.|..||+.....+.      .+.+ 
T Consensus       146 ~~~~~~~G~v~~~~~d-g~~~-~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~  223 (314)
T d1pjxa_         146 RSMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT  223 (314)
T ss_dssp             BTTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             ceeccCCceEEEEeec-Ccee-EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccc
Confidence                  2344444443 3322 2333344457899998764    34 445567889999876443221      1222 


Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEeCCC
Q psy14440        585 HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGN-ILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       585 h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~-~Lasgs~Dg~V~iWdl~~  659 (711)
                      +.+....+++..+|++.++....+.|.+||...++.+..+.......++++|.+|++ ++++.+.+|+|...++..
T Consensus       224 ~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            233467899999999888887889999999988887777776667789999999987 456666778888888765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=1.3e-07  Score=93.38  Aligned_cols=213  Identities=16%  Similarity=0.121  Sum_probs=137.0

Q ss_pred             EEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEE
Q psy14440        441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDN---TIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYF  517 (711)
Q Consensus       441 ~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg---~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l  517 (711)
                      .|.+.|.. +...+.+..+...+.+.+|||||+.|+......   .+.+.+...+... .+..+........|+|+|..+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCee
Confidence            45555643 444455555677889999999999998765433   4677777665544 444567888899999999988


Q ss_pred             EEEEC-CCe--EEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEE-cCC--cEEEEECCCCcEEEEeeCCCCCeEE
Q psy14440        518 ASAGH-DRM--ARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS-SDR--TIRLWDCVTGSHVRLLTGHKAPVYA  591 (711)
Q Consensus       518 ~sgs~-Dg~--i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs-~Dg--~I~iwD~~~~~~v~~~~~h~~~I~~  591 (711)
                      +.... ++.  +..+........ .............+++++..++..+ .+|  .|.+.++..+.. .....+......
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~  175 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQD  175 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEE
T ss_pred             eEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccc
Confidence            87663 222  223333333222 2223444455666777777655554 344  466667666543 344456677788


Q ss_pred             EEEecCCCEEEEEeCCC---cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCC---CcEEEEeCCC
Q psy14440        592 LSFSVCGRFLASAGGDG---NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQD---CSVKLWDFAK  659 (711)
Q Consensus       592 la~spdg~~Lasgs~Dg---~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~D---g~V~iWdl~~  659 (711)
                      ..|+|+|+.++..+.++   .|.+.|...+..  .+..+........|||||+.|+..+..   +.|++|++..
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             cccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            89999999988776544   455556655543  333345566788999999988765543   4678888764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=8.5e-08  Score=94.81  Aligned_cols=221  Identities=16%  Similarity=0.071  Sum_probs=140.0

Q ss_pred             EecCCCceEEEEECCCCCEEEEEeCCC-eEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccC
Q psy14440        383 LLNARQQVTCAEISEDVSILAVGFSES-YIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEG  461 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~LatG~~dg-~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~  461 (711)
                      +..+...+..-+|||||+.||...... ...+|                             +.+...+ ....+..+.+
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~-----------------------------~~~~~~~-~~~~~~~~~~   83 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALV-----------------------------IQTLANG-AVRQVASFPR   83 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEE-----------------------------EEETTTC-CEEEEECCSS
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCccee-----------------------------eeecccC-ceeEEeeeec
Confidence            345567788999999999999765432 11111                             1222222 2345556778


Q ss_pred             CEEEEEEcCCCCEEEEEeC-CCe--EEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE-CCC--eEEEEECCCCc
Q psy14440        462 PVRKLSFSPDRSLLLSCSQ-DNT--IRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG-HDR--MARLWATDSYH  535 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~-Dg~--V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs-~Dg--~i~lwd~~~~~  535 (711)
                      ......|+|+|+.++..+. ++.  +..+.......... ...........++.++..++..+ .++  .+.+.+...+.
T Consensus        84 ~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~  162 (269)
T d2hqsa1          84 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  162 (269)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             ccccceecCCCCeeeEeeecCCccceeecccccccceee-eeccccccccccccccccceecccccCCceEeeeeccccc
Confidence            8899999999998887654 332  33333333332222 23444455566777776555444 455  45555666553


Q ss_pred             eeEEeecCCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeC---CCc
Q psy14440        536 PLRLFVGHYSDVDCVQFHPNSNYVATGSSDR---TIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG---DGN  609 (711)
Q Consensus       536 ~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg---~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~---Dg~  609 (711)
                      . .....+........|+|+++.++..+.++   .+.+.|...+..  ....+........|||||++|+..+.   ...
T Consensus       163 ~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~  239 (269)
T d2hqsa1         163 P-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSV  239 (269)
T ss_dssp             C-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEE
T ss_pred             c-eeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcE
Confidence            3 33444566777889999999988877654   355556555543  33345566788899999999875543   347


Q ss_pred             EEEEECCCCeEEEEeeCCCCCEEEEEEeC
Q psy14440        610 VHMWDLSNGHLLTLLTGHTDVVRALCFSR  638 (711)
Q Consensus       610 I~iwDl~sg~~i~~l~~h~~~V~sl~fsp  638 (711)
                      |+++++..+.. ..+....+.+...+|||
T Consensus       240 l~~~~~dg~~~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         240 LNLVSTDGRFK-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred             EEEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence            89999976654 45555667788899998

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.99  E-value=5.9e-07  Score=92.09  Aligned_cols=233  Identities=10%  Similarity=0.049  Sum_probs=153.8

Q ss_pred             EecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCC
Q psy14440        383 LLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGP  462 (711)
Q Consensus       383 l~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~  462 (711)
                      +......+-.++|.++|++.++-..++.|..|+.++..                               ....+....+.
T Consensus        35 ~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~-------------------------------~~~~~~~~~~~   83 (319)
T d2dg1a1          35 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-------------------------------IKRPFVSHKAN   83 (319)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-------------------------------EEEEEECSSSS
T ss_pred             eccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCe-------------------------------EEEEEeCCCCC
Confidence            34444556789999999988887778888777764432                               22223334456


Q ss_pred             EEEEEEcCCCCEEEEEeC----CCeEEEEECCCCeEEEEEec--CCCCEEEEEEcCCCCEEEEEEC------CCeEEEEE
Q psy14440        463 VRKLSFSPDRSLLLSCSQ----DNTIRLWSLLLWRCLVVYKG--HGHPVWDIKFSPHGYYFASAGH------DRMARLWA  530 (711)
Q Consensus       463 V~~l~fspdg~~L~s~s~----Dg~V~iwdl~t~~~~~~~~~--h~~~V~~v~~sp~g~~l~sgs~------Dg~i~lwd  530 (711)
                      ..+++|++||+++++...    .+.|...+..+.........  -.....++++.++|++.++...      .+.+..++
T Consensus        84 p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~  163 (319)
T d2dg1a1          84 PAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVS  163 (319)
T ss_dssp             EEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEEC
T ss_pred             eeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEe
Confidence            789999999987776543    23455555555444443332  1345788999999987766432      23355555


Q ss_pred             CCCCceeEEeecCCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCCC-cEEEE-------eeCCCCCeEEEEEecCCCEE
Q psy14440        531 TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATG-SSDRTIRLWDCVTG-SHVRL-------LTGHKAPVYALSFSVCGRFL  601 (711)
Q Consensus       531 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~latg-s~Dg~I~iwD~~~~-~~v~~-------~~~h~~~I~~la~spdg~~L  601 (711)
                      .+.. .+..+.......+.++|+++++.|+.+ +..+.|+.||+... .....       ..........+++..+|++.
T Consensus       164 ~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~  242 (319)
T d2dg1a1         164 PDFR-TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLY  242 (319)
T ss_dssp             TTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEE
T ss_pred             cccc-eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEE
Confidence            5443 333333334456789999999876554 55789999997632 21111       11122346789999999988


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEee------CCCCCEEEEEEeCCCCEEEEEeC
Q psy14440        602 ASAGGDGNVHMWDLSNGHLLTLLT------GHTDVVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       602 asgs~Dg~I~iwDl~sg~~i~~l~------~h~~~V~sl~fspdg~~Lasgs~  648 (711)
                      ++....|.|.+||- +|+.+..+.      ++...+++++|.+++..+++...
T Consensus       243 Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         243 VAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            88888999999994 799888875      34456789999988877766554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.97  E-value=1.1e-07  Score=96.56  Aligned_cols=194  Identities=12%  Similarity=0.020  Sum_probs=138.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce-eEEe
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP-LRLF  540 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~-~~~~  540 (711)
                      .+..+++++||+++++...+++|..|+....  ...+......+.+++|+++|+++++...++.+..|+...... ...+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            5789999999999999999999999886543  333444667899999999999999988888888887654322 2222


Q ss_pred             e--cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC----------CCCCeEEEEEecCCCEEEEEeCCC
Q psy14440        541 V--GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG----------HKAPVYALSFSVCGRFLASAGGDG  608 (711)
Q Consensus       541 ~--~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~----------h~~~I~~la~spdg~~Lasgs~Dg  608 (711)
                      .  ........+++.++++++++.+.++.+..+|...+........          .......++++. +.++++.+..+
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM  185 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence            1  2445688999999999999888899999999887754332221          123456676653 34455666778


Q ss_pred             cEEEEECCCCeEEEE--eeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        609 NVHMWDLSNGHLLTL--LTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       609 ~I~iwDl~sg~~i~~--l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      .|..+++........  .........+++|+++|+++++...+++|..|+..
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             eEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence            899888765432211  11122345679999999988888889999988754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=5.2e-08  Score=96.97  Aligned_cols=197  Identities=6%  Similarity=0.003  Sum_probs=134.1

Q ss_pred             CEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEe
Q psy14440        462 PVRKLSFSPDRSLLLSC-SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF  540 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~-s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~  540 (711)
                      .-++++++++|+..++. +..+.|..++............-....+.++++++|+++++....+.+++++..+...+...
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~   94 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF   94 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence            34799999999966654 45577777766543322222122234567899999998888777777776665554443332


Q ss_pred             ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q psy14440        541 VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL  620 (711)
Q Consensus       541 ~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~  620 (711)
                       .......+++++++++++++-..+..+..++..................+++++++|+++++...++.|..+|......
T Consensus        95 -~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~  173 (260)
T d1rwia_          95 -DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  173 (260)
T ss_dssp             -CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             -eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee
Confidence             2345678999999999888777777788887655443222222234557899999999888888888999999876544


Q ss_pred             EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        621 LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       621 i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      .............|++.++|+++++....+.|..++...
T Consensus       174 ~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         174 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            433334456678999999999988888888888887543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.83  E-value=1.9e-06  Score=86.25  Aligned_cols=192  Identities=9%  Similarity=0.130  Sum_probs=139.4

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec------CCCCEEEEEEcCCC-CEEEEE-ECCCeEEEEECCC
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG------HGHPVWDIKFSPHG-YYFASA-GHDRMARLWATDS  533 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~------h~~~V~~v~~sp~g-~~l~sg-s~Dg~i~lwd~~~  533 (711)
                      .-..++++++|+.+++-..++.|++||.+ ++.+..+..      ....-..+++..+. .++++. +.++.|..++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            45899999999988777778899999975 666666632      11234556665543 344433 345677777764 


Q ss_pred             CceeEEee-cCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee--CCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy14440        534 YHPLRLFV-GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT--GHKAPVYALSFSVCGRFLASAGGDGNV  610 (711)
Q Consensus       534 ~~~~~~~~-~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~--~h~~~I~~la~spdg~~Lasgs~Dg~I  610 (711)
                      +.....+. ........+++.++++++++....+.+.++|. +++.+..+.  .+......+++.++|+.+++....+.|
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V  180 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  180 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccce
Confidence            45555553 34556789999999998888887888889885 566677663  455678899999999998888888999


Q ss_pred             EEEECCCCeEEEEee--CCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEeC
Q psy14440        611 HMWDLSNGHLLTLLT--GHTDVVRALCFSRDGNILASSGQ-DCSVKLWDF  657 (711)
Q Consensus       611 ~iwDl~sg~~i~~l~--~h~~~V~sl~fspdg~~Lasgs~-Dg~V~iWdl  657 (711)
                      ++||. +|+.+..+.  ++.....+|++.++|+++++-+. ++.|.+|+-
T Consensus       181 ~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         181 KVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             EEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             eeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC
Confidence            99996 677777763  34456889999999998877554 457999873

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.81  E-value=3.8e-06  Score=85.84  Aligned_cols=198  Identities=12%  Similarity=0.045  Sum_probs=134.0

Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC----CeEEEEECCCC
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD----RMARLWATDSY  534 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D----g~i~lwd~~~~  534 (711)
                      ....+.+++|.++|++.++-...+.|..|+..+................++++++|+.+++...+    +.+...+....
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            34456789999999977777788999999998877666665566778899999999887776432    33445555554


Q ss_pred             ceeEEeec--CCCCeeEEEEcCCCCEEEEEEc------CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEE-e
Q psy14440        535 HPLRLFVG--HYSDVDCVQFHPNSNYVATGSS------DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASA-G  605 (711)
Q Consensus       535 ~~~~~~~~--h~~~V~~v~~sp~~~~latgs~------Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasg-s  605 (711)
                      ........  -....+.+++.++|++.++...      .+.+..++...+ .+..+...-...+.++|+++++.|+.+ +
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEecc
Confidence            44333322  2334678999999987776432      123555554433 333333333456789999999976555 5


Q ss_pred             CCCcEEEEECCC-CeEEE-------EeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy14440        606 GDGNVHMWDLSN-GHLLT-------LLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDF  657 (711)
Q Consensus       606 ~Dg~I~iwDl~s-g~~i~-------~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl  657 (711)
                      ..++|..||+.. +....       ...........+++..+|++.++....|.|.+||-
T Consensus       197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC
Confidence            678999999753 21111       11111234678999999999998888999999994

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.81  E-value=1.1e-06  Score=91.81  Aligned_cols=201  Identities=6%  Similarity=0.041  Sum_probs=121.6

Q ss_pred             cccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEE-ecCCCCEEEEEEcCCCCEE--EEEE-CCCeEEEEECC
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL-WRCLVVY-KGHGHPVWDIKFSPHGYYF--ASAG-HDRMARLWATD  532 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t-~~~~~~~-~~h~~~V~~v~~sp~g~~l--~sgs-~Dg~i~lwd~~  532 (711)
                      .....+..|+|++++++|++++. +.+..|.+.. +...... .........+.++++++.+  +++. ..++|..+.+.
T Consensus        37 ~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          37 PQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             CTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             cCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence            34555677999999999988865 4577887753 2222211 1123334566778887743  3322 23455544432


Q ss_pred             CC-------------ce---eEE-eecCCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCCC-cEE--EEee--CCCCCe
Q psy14440        533 SY-------------HP---LRL-FVGHYSDVDCVQFHPNSNYVATGSS-DRTIRLWDCVTG-SHV--RLLT--GHKAPV  589 (711)
Q Consensus       533 ~~-------------~~---~~~-~~~h~~~V~~v~~sp~~~~latgs~-Dg~I~iwD~~~~-~~v--~~~~--~h~~~I  589 (711)
                      ..             ..   ... -......+.++.|+|+|+++++++. ...|.+|+.... ...  ....  ......
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            11             10   000 0112334789999999999888864 457888876543 222  1111  235678


Q ss_pred             EEEEEecCCCEEEEEe-CCCcEEEEECCCCeE--EEE---ee--------------CCCCCEEEEEEeCCCCEEEEEeC-
Q psy14440        590 YALSFSVCGRFLASAG-GDGNVHMWDLSNGHL--LTL---LT--------------GHTDVVRALCFSRDGNILASSGQ-  648 (711)
Q Consensus       590 ~~la~spdg~~Lasgs-~Dg~I~iwDl~sg~~--i~~---l~--------------~h~~~V~sl~fspdg~~Lasgs~-  648 (711)
                      ..++|+|+|+++++.. .+++|.+|++..++.  +..   ..              .+......+.++|||++|+++.. 
T Consensus       196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~  275 (365)
T d1jofa_         196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence            8999999999886665 578999999876532  222   11              11123567899999999887642 


Q ss_pred             C-----CcEEEEeCCC
Q psy14440        649 D-----CSVKLWDFAK  659 (711)
Q Consensus       649 D-----g~V~iWdl~~  659 (711)
                      +     +.|..|++..
T Consensus       276 ~~~~~~~~i~~~~~~~  291 (365)
T d1jofa_         276 NKFELQGYIAGFKLRD  291 (365)
T ss_dssp             SSTTSCCEEEEEEECT
T ss_pred             CCCccceEEEEEEecC
Confidence            2     2377777765

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.75  E-value=3.3e-06  Score=86.14  Aligned_cols=196  Identities=12%  Similarity=0.072  Sum_probs=128.2

Q ss_pred             CEEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCeEEEEEecC----CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q psy14440        462 PVRKLSFSPDRSLLLSCSQ-------DNTIRLWSLLLWRCLVVYKGH----GHPVWDIKFSPHGYYFASAGHDRMARLWA  530 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~-------Dg~V~iwdl~t~~~~~~~~~h----~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd  530 (711)
                      ..-+++|.++|+++++...       +|+|..||..++.........    ...-..++|.++++.++++...+.+..++
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            3567899999997776433       467999998887655443221    12356799999999888888778888898


Q ss_pred             CCCCceeEEeecCC----CCeeEEEEcCCCCEEEEEEc---------------CCcEEEEECCCCcEEEEeeCCCCCeEE
Q psy14440        531 TDSYHPLRLFVGHY----SDVDCVQFHPNSNYVATGSS---------------DRTIRLWDCVTGSHVRLLTGHKAPVYA  591 (711)
Q Consensus       531 ~~~~~~~~~~~~h~----~~V~~v~~sp~~~~latgs~---------------Dg~I~iwD~~~~~~v~~~~~h~~~I~~  591 (711)
                      .+............    ...+.+++.++|++.++...               +|.|..++. .++...... .-..-+.
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~-~~~~pNG  176 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDT-AFQFPNG  176 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEE-EESSEEE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeC-Ccceeee
Confidence            87653222111111    13578999999998887532               234444443 344333332 3334578


Q ss_pred             EEEecCCC----EE-EEEeCCCcEEEEECCCC-eEE-----EEeeC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        592 LSFSVCGR----FL-ASAGGDGNVHMWDLSNG-HLL-----TLLTG-HTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       592 la~spdg~----~L-asgs~Dg~I~iwDl~sg-~~i-----~~l~~-h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ++|++++.    +| ++-+..+.|..||+... ...     ..+.+ +.+....+++..+|+++++....+.|.+||-..
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~  256 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred             eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCC
Confidence            99999875    44 45567788999987543 321     12222 223467899999999988888889999998653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=9.4e-07  Score=95.53  Aligned_cols=247  Identities=14%  Similarity=0.102  Sum_probs=138.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEe--ecccCCEEEE
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTL--VGHEGPVRKL  466 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l--~~h~~~V~~l  466 (711)
                      .+....||||+++|+.+..-.  ++|...                    ..+.+.++|..++......  ....+.+...
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~--~~~r~s--------------------~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~  119 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVE--PIYQHS--------------------YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYA  119 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCC--CCSSSC--------------------CCSEEEEEESSSCCCEECCCTTCCSCCCSBC
T ss_pred             ccceeEECCCCCeEEEEEccc--ceeEee--------------------ccccEEEEEccCCceeeccCccCCcccccee
Confidence            455678999999988775421  233211                    1234455555544432221  1223456678


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCE-----------------EEEEEcCCCCEEEEEECC-C---
Q psy14440        467 SFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK-GHGHPV-----------------WDIKFSPHGYYFASAGHD-R---  524 (711)
Q Consensus       467 ~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~-~h~~~V-----------------~~v~~sp~g~~l~sgs~D-g---  524 (711)
                      .|||||+.|+-.. ++.|.+.+..++..++... +....|                 ..+.|||||++||....| .   
T Consensus       120 ~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~  198 (465)
T d1xfda1         120 GWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVP  198 (465)
T ss_dssp             CBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred             eeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccc
Confidence            8999999988765 5679998887766555443 211112                 467799999999987522 2   


Q ss_pred             ------------------------------eEEEEECCCCceeEEee------cCCCCeeEEEEcCCCCEEEEEEc-C--
Q psy14440        525 ------------------------------MARLWATDSYHPLRLFV------GHYSDVDCVQFHPNSNYVATGSS-D--  565 (711)
Q Consensus       525 ------------------------------~i~lwd~~~~~~~~~~~------~h~~~V~~v~~sp~~~~latgs~-D--  565 (711)
                                                    .+.++|++++.......      ....-+..+.|+++++.++.... +  
T Consensus       199 ~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~  278 (465)
T d1xfda1         199 IMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQN  278 (465)
T ss_dssp             EEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSC
T ss_pred             eeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccc
Confidence                                          23344444332211111      11123567899999887666543 2  


Q ss_pred             -CcEEEEECCCCcEEEEeeCC-CCCe----EEEEEecCCCEEE---EEeCCC--cEEEEECC------CCeEEEEeeCCC
Q psy14440        566 -RTIRLWDCVTGSHVRLLTGH-KAPV----YALSFSVCGRFLA---SAGGDG--NVHMWDLS------NGHLLTLLTGHT  628 (711)
Q Consensus       566 -g~I~iwD~~~~~~v~~~~~h-~~~I----~~la~spdg~~La---sgs~Dg--~I~iwDl~------sg~~i~~l~~h~  628 (711)
                       ..|.++|..+|++...+..+ .+.|    ....|++||+.++   ....+|  .+...++.      .++.+..+....
T Consensus       279 ~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~  358 (465)
T d1xfda1         279 VSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD  358 (465)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS
T ss_pred             cceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCC
Confidence             25888999999877665432 2222    3457899998432   222333  34433321      233333443333


Q ss_pred             CCEEEE-EEeCCCCEEE-EEeCC--CcEEEEeCC
Q psy14440        629 DVVRAL-CFSRDGNILA-SSGQD--CSVKLWDFA  658 (711)
Q Consensus       629 ~~V~sl-~fspdg~~La-sgs~D--g~V~iWdl~  658 (711)
                      -.|..+ +|+.+++.|+ ++..+  +.-+||.+.
T Consensus       359 w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~  392 (465)
T d1xfda1         359 WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (465)
T ss_dssp             SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             ceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEE
Confidence            446654 6888877654 44443  244566654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.54  E-value=6.3e-05  Score=75.54  Aligned_cols=184  Identities=15%  Similarity=0.094  Sum_probs=128.1

Q ss_pred             cCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec----CCCCEEEEEEcCCCCEEEEEEC----CCeEEEEEC
Q psy14440        460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG----HGHPVWDIKFSPHGYYFASAGH----DRMARLWAT  531 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~----h~~~V~~v~~sp~g~~l~sgs~----Dg~i~lwd~  531 (711)
                      ...+.++++..+|.++++ +.+| |.++|..+++.......    ....++++.+.++|++.++...    .+.-.+|..
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~g-l~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDDG-LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETTE-EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeCc-cEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            346788999988876665 4554 99999998876544332    1235889999999987666542    234556666


Q ss_pred             CCCceeEEeecCCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCCC------cE--EEEeeCCCCCeEEEEEecCCCEEE
Q psy14440        532 DSYHPLRLFVGHYSDVDCVQFHPNSNYVATG-SSDRTIRLWDCVTG------SH--VRLLTGHKAPVYALSFSVCGRFLA  602 (711)
Q Consensus       532 ~~~~~~~~~~~h~~~V~~v~~sp~~~~latg-s~Dg~I~iwD~~~~------~~--v~~~~~h~~~I~~la~spdg~~La  602 (711)
                      ..++....+. ....-+.++|+++++.++.+ +..+.|..|++...      +.  ...+.+..+....+++..+|++.+
T Consensus       136 ~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWv  214 (295)
T d2ghsa1         136 AKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN  214 (295)
T ss_dssp             ETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred             cCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEe
Confidence            6665544443 34456789999999876554 45778988887421      11  122334456688999999999877


Q ss_pred             EEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEe-CCCCEEEEEe
Q psy14440        603 SAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFS-RDGNILASSG  647 (711)
Q Consensus       603 sgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fs-pdg~~Lasgs  647 (711)
                      +.-..|.|..|| .+|+.+..+.-....+++++|- +|.+.|+..+
T Consensus       215 a~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         215 ARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             eeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            777788999999 5789999888766779999996 5666555443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.46  E-value=9.2e-06  Score=79.75  Aligned_cols=200  Identities=13%  Similarity=0.077  Sum_probs=111.7

Q ss_pred             EEeecccCCEEEEEEcCCCCEEEEEeC-C-----CeEEEEECCCCeEEEEEe------cCCCCEEEEEEcCCCCEEEEEE
Q psy14440        454 RTLVGHEGPVRKLSFSPDRSLLLSCSQ-D-----NTIRLWSLLLWRCLVVYK------GHGHPVWDIKFSPHGYYFASAG  521 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~~L~s~s~-D-----g~V~iwdl~t~~~~~~~~------~h~~~V~~v~~sp~g~~l~sgs  521 (711)
                      +.+..+.+.+...+|||||+.|+..+. +     ..|.+++..+++......      ..........|+|+|+.++...
T Consensus        34 ~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          34 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            445566777899999999999886532 2     247778887777654322      1223456789999999888764


Q ss_pred             CC------CeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCC-----------cEEEEECCCCcEEEEeeC
Q psy14440        522 HD------RMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR-----------TIRLWDCVTGSHVRLLTG  584 (711)
Q Consensus       522 ~D------g~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg-----------~I~iwD~~~~~~v~~~~~  584 (711)
                      ..      ..+...+.+.+.....   +......+.+.+.+.+++....+.           ...++....+. ......
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  189 (281)
T d1k32a2         114 AMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA-FKKIVD  189 (281)
T ss_dssp             TTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE-EEEEEC
T ss_pred             ccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccc-eeeccC
Confidence            32      2345555554433222   223333444444444444332221           12222222222 223333


Q ss_pred             CCCCeEEEEEecCCCEEEEEeCC--CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q psy14440        585 HKAPVYALSFSVCGRFLASAGGD--GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS  661 (711)
Q Consensus       585 h~~~I~~la~spdg~~Lasgs~D--g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~  661 (711)
                      +........++++. .+.....+  ..|.++|+.+++...........  ...|++||+.|+.. .+|.|+++|+....
T Consensus       190 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~--~~~~SpDG~~I~f~-~~~~l~~~d~~~g~  264 (281)
T d1k32a2         190 MSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY--PRHLNTDGRRILFS-KGGSIYIFNPDTEK  264 (281)
T ss_dssp             CSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEECCCCCSSC--EEEEEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred             Cccccceeeeeccc-cceecccccccceEEEeCCCCceEEeecCCCcc--cccCcCCCCEEEEE-eCCEEEEEECCCCC
Confidence            44455566666553 23333333  36788888776544322222223  34689999988764 47889999987643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.5e-06  Score=92.11  Aligned_cols=219  Identities=10%  Similarity=0.071  Sum_probs=135.8

Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCC
Q psy14440        394 EISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRS  473 (711)
Q Consensus       394 ~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~  473 (711)
                      .|.+|+.++.. ..+|.|.+|++.+++...+.                    +..+        -..-.+....||||++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~--------------------~~~~--------~~~~~~~~~~~SpD~~   73 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLI--------------------EGKK--------IESLRAIRYEISPDRE   73 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE--------------------CTTT--------TTTTTCSEEEECTTSS
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEE--------------------cCcc--------ccccccceeEECCCCC
Confidence            57788776543 45667888877554322111                    1000        0122456778999999


Q ss_pred             EEEEEe---------CCCeEEEEECCCCeEEEEEec--CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeec
Q psy14440        474 LLLSCS---------QDNTIRLWSLLLWRCLVVYKG--HGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG  542 (711)
Q Consensus       474 ~L~s~s---------~Dg~V~iwdl~t~~~~~~~~~--h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~  542 (711)
                      +++...         ..+.+.++|+.+++.......  ....+....|||+|+.+|... ++.+.+.+..++..++....
T Consensus        74 ~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~  152 (465)
T d1xfda1          74 YALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVST  152 (465)
T ss_dssp             EEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECC
T ss_pred             eEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecc
Confidence            887763         357789999988775443322  234455688999999998876 67888888887766655432


Q ss_pred             -CCC-----------------CeeEEEEcCCCCEEEEEEcC-Cc---------------------------------EEE
Q psy14440        543 -HYS-----------------DVDCVQFHPNSNYVATGSSD-RT---------------------------------IRL  570 (711)
Q Consensus       543 -h~~-----------------~V~~v~~sp~~~~latgs~D-g~---------------------------------I~i  570 (711)
                       ...                 .-..+.|+|||++||....| ..                                 +.+
T Consensus       153 g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v  232 (465)
T d1xfda1         153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV  232 (465)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred             cCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEE
Confidence             111                 12467899999999987532 22                                 344


Q ss_pred             EECCCCcEEEEee------CCCCCeEEEEEecCCCEEEEEeC-C---CcEEEEECCCCeEEEEeeCCC-CCE----EEEE
Q psy14440        571 WDCVTGSHVRLLT------GHKAPVYALSFSVCGRFLASAGG-D---GNVHMWDLSNGHLLTLLTGHT-DVV----RALC  635 (711)
Q Consensus       571 wD~~~~~~v~~~~------~h~~~I~~la~spdg~~Lasgs~-D---g~I~iwDl~sg~~i~~l~~h~-~~V----~sl~  635 (711)
                      +|+.++.......      ....-+..+.|++++++++.... +   ..|.++|..+|++...+..+. +.|    ....
T Consensus       233 ~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~  312 (465)
T d1xfda1         233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPV  312 (465)
T ss_dssp             EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCE
T ss_pred             EecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCcee
Confidence            4544433221111      11223677899999987665432 2   368899999998765554322 222    3457


Q ss_pred             EeCCCCE
Q psy14440        636 FSRDGNI  642 (711)
Q Consensus       636 fspdg~~  642 (711)
                      |++||+.
T Consensus       313 ~~~dg~~  319 (465)
T d1xfda1         313 FSKDGRK  319 (465)
T ss_dssp             ECTTSCS
T ss_pred             EccCCCe
Confidence            8999984

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.32  E-value=0.00045  Score=69.01  Aligned_cols=189  Identities=12%  Similarity=0.007  Sum_probs=128.6

Q ss_pred             EEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeec-
Q psy14440        465 KLSFSPDRSLL-LSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG-  542 (711)
Q Consensus       465 ~l~fspdg~~L-~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~-  542 (711)
                      +..|++....| .+--..+.|..||..+++.. .+. ....+.++++..+|.++++ +.+ .+.++|..+++....... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            45677654444 44446788999999887654 333 3557889999988866654 554 588999998875443321 


Q ss_pred             ---CCCCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEE
Q psy14440        543 ---HYSDVDCVQFHPNSNYVATGSSD----RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASA-GGDGNVHMWD  614 (711)
Q Consensus       543 ---h~~~V~~v~~sp~~~~latgs~D----g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasg-s~Dg~I~iwD  614 (711)
                         ....++.+.+.++|++.++...+    +.-.+|.+..++....+.+ -...+.++|+++++.++.+ +..+.|..|+
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~  176 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVP  176 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEee
Confidence               12347888999999977765432    3456777777765555543 3456789999999876554 5577899888


Q ss_pred             CCC------C--eEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        615 LSN------G--HLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       615 l~s------g--~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      +..      +  .....+.+..+...++++..+|++.++.-..|.|..||-.
T Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~  228 (295)
T d2ghsa1         177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  228 (295)
T ss_dssp             BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             ecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC
Confidence            642      1  1223333445678899999999988877778889999843

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=0.0027  Score=62.05  Aligned_cols=200  Identities=13%  Similarity=-0.013  Sum_probs=131.5

Q ss_pred             cccCCEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEE-EEEECCCeEEEEECCCCc
Q psy14440        458 GHEGPVRKLSFSPDRSLLLSC-SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYF-ASAGHDRMARLWATDSYH  535 (711)
Q Consensus       458 ~h~~~V~~l~fspdg~~L~s~-s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l-~sgs~Dg~i~lwd~~~~~  535 (711)
                      .+...+.+++|...++.|+-+ ..++.|+..++...............+.++++..-+..+ ++-...+.|.+.+++...
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            344567889999877766655 456789999987666555555444678889987645444 455567899999998766


Q ss_pred             eeEEeecCCCCeeEEEEcCCCCEEEEEEcC-Cc--EEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEE-eCCCcEE
Q psy14440        536 PLRLFVGHYSDVDCVQFHPNSNYVATGSSD-RT--IRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASA-GGDGNVH  611 (711)
Q Consensus       536 ~~~~~~~h~~~V~~v~~sp~~~~latgs~D-g~--I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasg-s~Dg~I~  611 (711)
                      ....+.........++++|...+++..... +.  |..-++............-.....|++++.++.|..+ ...+.|.
T Consensus       113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  192 (263)
T d1npea_         113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (263)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEE
Confidence            544444455678999999987777765433 23  4444655444333333344567899999887777655 4668899


Q ss_pred             EEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        612 MWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       612 iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ..|+........+.+.. ...+|++. ++.+.++-...++|...|...
T Consensus       193 ~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~  238 (263)
T d1npea_         193 CLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAI  238 (263)
T ss_dssp             EEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             EEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCC
Confidence            99987655444444433 34678876 344444444567777776653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.97  E-value=0.00036  Score=67.80  Aligned_cols=209  Identities=11%  Similarity=0.041  Sum_probs=109.2

Q ss_pred             EEEEecCCCceEEEEECCCCCEEEEEeC-CC-----eEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeE
Q psy14440        380 CYTLLNARQQVTCAEISEDVSILAVGFS-ES-----YIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETT  453 (711)
Q Consensus       380 ~~tl~~h~~~V~~l~fs~dg~~LatG~~-dg-----~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  453 (711)
                      ...+..+.+.+...+|||||+.||.... ++     .|.+++..+++...+....                         
T Consensus        33 ~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~-------------------------   87 (281)
T d1k32a2          33 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFS-------------------------   87 (281)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCC-------------------------
T ss_pred             EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecC-------------------------
Confidence            3456677788999999999999986542 22     2444444443332221110                         


Q ss_pred             EEeecccCCEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCC---
Q psy14440        454 RTLVGHEGPVRKLSFSPDRSLLLSCSQD------NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDR---  524 (711)
Q Consensus       454 ~~l~~h~~~V~~l~fspdg~~L~s~s~D------g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg---  524 (711)
                      ..............|+|||+.|+.....      ..+...+...+.....   +......+.+...+..++....+.   
T Consensus        88 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (281)
T d1k32a2          88 GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTFELPHW  164 (281)
T ss_dssp             EEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCSCCTTS
T ss_pred             CCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeecccccee
Confidence            0011122345678899999988875432      2355556655544322   222222333333333333322211   


Q ss_pred             --------eEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEE-c--CCcEEEEECCCCcEEEEeeCCCCCeEEEE
Q psy14440        525 --------MARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS-S--DRTIRLWDCVTGSHVRLLTGHKAPVYALS  593 (711)
Q Consensus       525 --------~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs-~--Dg~I~iwD~~~~~~v~~~~~h~~~I~~la  593 (711)
                              ...++...... ...............+.++  .++..+ .  ...|.++|+.+++..+ +..+.. .....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~-~~~~~  239 (281)
T d1k32a2         165 KGYRGGTRGKIWIEVNSGA-FKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRK-HTSFTD-YYPRH  239 (281)
T ss_dssp             TTCCSTTCCEEEEEEETTE-EEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEE-CCCCCS-SCEEE
T ss_pred             eeeccCCcceeeeeccccc-eeeccCCccccceeeeecc--ccceecccccccceEEEeCCCCceEE-eecCCC-ccccc
Confidence                    11122222222 2222233344455556544  333333 2  3357888887776544 332222 23346


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy14440        594 FSVCGRFLASAGGDGNVHMWDLSNGHLLT  622 (711)
Q Consensus       594 ~spdg~~Lasgs~Dg~I~iwDl~sg~~i~  622 (711)
                      |||||+.|+.. .+|.|+++|+.+++...
T Consensus       240 ~SpDG~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         240 LNTDGRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             EEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             CcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            89999998764 46789999998887654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.84  E-value=0.013  Score=56.96  Aligned_cols=217  Identities=12%  Similarity=0.017  Sum_probs=134.3

Q ss_pred             CceEEEEECCCCCEEEEE-eCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEE
Q psy14440        388 QQVTCAEISEDVSILAVG-FSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKL  466 (711)
Q Consensus       388 ~~V~~l~fs~dg~~LatG-~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l  466 (711)
                      ..+.+++|....+.|.-. ..++.|+..++++..                               ....+....+.+.++
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~-------------------------------~~~v~~~~~~~p~~i   84 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-------------------------------PTTIIRQDLGSPEGI   84 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-------------------------------CEEEECTTCCCEEEE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC-------------------------------cEEEEEeccccccEE
Confidence            457778888766555443 344556555554322                               112222223467889


Q ss_pred             EEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC-Ce--EEEEECCCCceeEEeec
Q psy14440        467 SFSPDRSLLLSC-SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD-RM--ARLWATDSYHPLRLFVG  542 (711)
Q Consensus       467 ~fspdg~~L~s~-s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D-g~--i~lwd~~~~~~~~~~~~  542 (711)
                      ++..-+..|+.+ ...+.|.+.++....+...+.........+++.|...++...... +.  |..-+++..........
T Consensus        85 AvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~  164 (263)
T d1npea_          85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD  164 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT
T ss_pred             EEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee
Confidence            998766666654 456789999998665544444445678999999866665544322 23  44446665544444444


Q ss_pred             CCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCeE
Q psy14440        543 HYSDVDCVQFHPNSNYVATG-SSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLA-SAGGDGNVHMWDLSNGHL  620 (711)
Q Consensus       543 h~~~V~~v~~sp~~~~latg-s~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~La-sgs~Dg~I~iwDl~sg~~  620 (711)
                      .......+++.+.++.|..+ ...++|...|+........+.+-. ...+|++.  +.+|+ +-...+.|...|..+|+.
T Consensus       165 ~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~  241 (263)
T d1npea_         165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE  241 (263)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred             cccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEEEECCCCcc
Confidence            44567899998877777555 457789999987655444444433 34578776  44554 444668999999999988


Q ss_pred             EEEeeCC-CCCEEEEEEeC
Q psy14440        621 LTLLTGH-TDVVRALCFSR  638 (711)
Q Consensus       621 i~~l~~h-~~~V~sl~fsp  638 (711)
                      +..+..+ .....+|+..+
T Consensus       242 ~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         242 MDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EEEECCSSCCCCCCEEEEC
T ss_pred             ceEECCCCCCCcceEEEeC
Confidence            8766432 24455665544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.81  E-value=0.00092  Score=68.96  Aligned_cols=192  Identities=13%  Similarity=0.145  Sum_probs=126.2

Q ss_pred             EEEEcC---CCCEEEEEe-CCCeEEEEECCCCeEEEEEec-CCCCEEEEEEcC--CCCEEEEEECCC-------------
Q psy14440        465 KLSFSP---DRSLLLSCS-QDNTIRLWSLLLWRCLVVYKG-HGHPVWDIKFSP--HGYYFASAGHDR-------------  524 (711)
Q Consensus       465 ~l~fsp---dg~~L~s~s-~Dg~V~iwdl~t~~~~~~~~~-h~~~V~~v~~sp--~g~~l~sgs~Dg-------------  524 (711)
                      .+++..   ||++|++.. .++.|.+.|+++.++...... ....+..+...+  ...|++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            566654   899888876 578899999999998776543 344566666654  445888777633             


Q ss_pred             -----eEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCC---------------cEEEEE------------
Q psy14440        525 -----MARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR---------------TIRLWD------------  572 (711)
Q Consensus       525 -----~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg---------------~I~iwD------------  572 (711)
                           .+.++|.++.+....+.- ......+.++++|+++++.|.+.               .+.+++            
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                 366788888776655442 34577899999999999887431               133333            


Q ss_pred             -----------CCCC---cEEEEeeCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCC------------eEEEEee
Q psy14440        573 -----------CVTG---SHVRLLTGHKAPVYALSFSVCGRFLASAG-GDGNVHMWDLSNG------------HLLTLLT  625 (711)
Q Consensus       573 -----------~~~~---~~v~~~~~h~~~I~~la~spdg~~Lasgs-~Dg~I~iwDl~sg------------~~i~~l~  625 (711)
                                 .++.   ..++.+-.. .....+.++|||+++++++ .+.+|.|+|+++-            ..+....
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             cEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence                       2211   111111111 1234678999999988776 5789999998641            1222222


Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        626 GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       626 ~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                       ..-.-..-+|...|+...|---|..|.-|++..
T Consensus       327 -lglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         327 -LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             -CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             -cCcCccccccCCCceEEEEeeccceEEEEecch
Confidence             233345668988887777777899999999854

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=0.02  Score=55.51  Aligned_cols=200  Identities=10%  Similarity=-0.057  Sum_probs=126.8

Q ss_pred             ccCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCe----EEEEEecCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECC
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCS-QDNTIRLWSLLLWR----CLVVYKGHGHPVWDIKFSPHGY-YFASAGHDRMARLWATD  532 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s-~Dg~V~iwdl~t~~----~~~~~~~h~~~V~~v~~sp~g~-~l~sgs~Dg~i~lwd~~  532 (711)
                      ....+.+++|+..++.|+-.. .++.|...++....    ...........+.++++...+. ..++-...+.|.+.+++
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            445677899998777776554 45667776664321    1222333334566788876444 44455567889999998


Q ss_pred             CCceeEEeecCCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEE-eCCCc
Q psy14440        533 SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSS--DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASA-GGDGN  609 (711)
Q Consensus       533 ~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~--Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasg-s~Dg~  609 (711)
                      .......+.........++++|...+|+....  .+.|.-.++............-...+.+++++.++.|+.+ ...+.
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~  187 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCE
Confidence            77766666666677899999997667665543  3457777765444433333344667899999887766665 45678


Q ss_pred             EEEEECCCCeEEEEeeC--CCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        610 VHMWDLSNGHLLTLLTG--HTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       610 I~iwDl~sg~~i~~l~~--h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      |...|+...........  ......+|++. ++.++.+-..++.|...+...
T Consensus       188 I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         188 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             EEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             EEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCC
Confidence            99999865443333332  22456678877 344555555677777777554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.021  Score=55.38  Aligned_cols=167  Identities=11%  Similarity=0.003  Sum_probs=109.3

Q ss_pred             cCCEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEE--CCCeEEEEECCCCce
Q psy14440        460 EGPVRKLSFSPDRSLLLSC-SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG--HDRMARLWATDSYHP  536 (711)
Q Consensus       460 ~~~V~~l~fspdg~~L~s~-s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs--~Dg~i~lwd~~~~~~  536 (711)
                      ...+.++++...++.|+.+ ...+.|.+.++........+.........+++.|...++....  ..+.|...+++....
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence            3456788888766666555 4567899999987766666666667788999998555554443  345677777776554


Q ss_pred             eEEeecCCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCCCcEEEEeeCC--CCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy14440        537 LRLFVGHYSDVDCVQFHPNSNYVATG-SSDRTIRLWDCVTGSHVRLLTGH--KAPVYALSFSVCGRFLASAGGDGNVHMW  613 (711)
Q Consensus       537 ~~~~~~h~~~V~~v~~sp~~~~latg-s~Dg~I~iwD~~~~~~v~~~~~h--~~~I~~la~spdg~~Lasgs~Dg~I~iw  613 (711)
                      .............+++.+.++.|..+ ...+.|...|+............  .....+|++. ++...++-..++.|...
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~  234 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA  234 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEE
Confidence            44444445667899999877766665 45678999998765544333332  2345677776 33334444466788888


Q ss_pred             ECCCCeEEEEeeCC
Q psy14440        614 DLSNGHLLTLLTGH  627 (711)
Q Consensus       614 Dl~sg~~i~~l~~h  627 (711)
                      +..+|.....+...
T Consensus       235 ~~~~g~~~~~~~~~  248 (266)
T d1ijqa1         235 NRLTGSDVNLLAEN  248 (266)
T ss_dssp             ETTTCCCCEEEECS
T ss_pred             ECCCCcceEEEEcC
Confidence            87777655555443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.58  E-value=0.039  Score=57.35  Aligned_cols=243  Identities=16%  Similarity=0.150  Sum_probs=127.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEc
Q psy14440        390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFS  469 (711)
Q Consensus       390 V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fs  469 (711)
                      +...++|||++++|.+-+.|                          |++...++++|..+++.+...... ....+++|+
T Consensus       127 ~~~~~~Spd~~~la~s~d~~--------------------------G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~  179 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSAS--------------------------GSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWT  179 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEET--------------------------TCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEEC
T ss_pred             ecceEecCCCCEEEEEeccc--------------------------cCchheeEEeccCcceeccccccc-ccccceEEc
Confidence            44557899999998654321                          122233344444444443221111 112468899


Q ss_pred             CCCCEEEEEeCC----------------CeEEEEECCCCe--EEEEEecCC--CCEEEEEEcCCCCEEEEEEC---CCeE
Q psy14440        470 PDRSLLLSCSQD----------------NTIRLWSLLLWR--CLVVYKGHG--HPVWDIKFSPHGYYFASAGH---DRMA  526 (711)
Q Consensus       470 pdg~~L~s~s~D----------------g~V~iwdl~t~~--~~~~~~~h~--~~V~~v~~sp~g~~l~sgs~---Dg~i  526 (711)
                      +|++.|+-...|                ..|..|.+.+..  -...+....  ..+..+..+.++++++....   +...
T Consensus       180 ~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~  259 (430)
T d1qfma1         180 HDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVN  259 (430)
T ss_dssp             TTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred             CCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccE
Confidence            999977654332                257777776542  234444433  34667788999988765432   3334


Q ss_pred             EEE--ECCCCc--------eeEEeecCCCCeeEEEEcCCCCEEEEEE---cCCcEEEEECCCCcE--EEEee-CCCCCeE
Q psy14440        527 RLW--ATDSYH--------PLRLFVGHYSDVDCVQFHPNSNYVATGS---SDRTIRLWDCVTGSH--VRLLT-GHKAPVY  590 (711)
Q Consensus       527 ~lw--d~~~~~--------~~~~~~~h~~~V~~v~~sp~~~~latgs---~Dg~I~iwD~~~~~~--v~~~~-~h~~~I~  590 (711)
                      .+|  +.....        ....+......+.-+. +.++.+++...   .++.|...++.....  ...+. .+...+.
T Consensus       260 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~  338 (430)
T d1qfma1         260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL  338 (430)
T ss_dssp             EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEE
T ss_pred             EEEEeeCCCcccccccccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCccee
Confidence            444  433211        1222322233333332 32333333332   245677777765432  23333 3444455


Q ss_pred             EEEEecCCCEEEEEe-CCC--cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEE-EeC---CCcEEEEeCCCC
Q psy14440        591 ALSFSVCGRFLASAG-GDG--NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILAS-SGQ---DCSVKLWDFAKL  660 (711)
Q Consensus       591 ~la~spdg~~Lasgs-~Dg--~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Las-gs~---Dg~V~iWdl~~~  660 (711)
                      .-.++..+.+|+... .++  .|+++++.+++.........+.|..+....+...+.. -+.   =.++.-||+.+.
T Consensus       339 ~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~  415 (430)
T d1qfma1         339 EWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE  415 (430)
T ss_dssp             EEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred             eeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCC
Confidence            444555556666553 454  6899999988876655544566666655555543332 221   256777887653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.56  E-value=0.01  Score=64.53  Aligned_cols=208  Identities=16%  Similarity=0.123  Sum_probs=128.5

Q ss_pred             CcEEEEEecCCCeeEEEeeccc-------------------------------------CCE-EEEEEcCCCCEEEEEeC
Q psy14440        439 DILVRIMDERNAETTRTLVGHE-------------------------------------GPV-RKLSFSPDRSLLLSCSQ  480 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h~-------------------------------------~~V-~~l~fspdg~~L~s~s~  480 (711)
                      .+.|+-+|..+++.+..+....                                     +.+ ...++.++...++.+..
T Consensus       175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg  254 (571)
T d2ad6a1         175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecc
Confidence            6789999999999887654221                                     112 23455666666655443


Q ss_pred             ----------------CCeEEEEECCCCeEEEEEecCCCCEEEE---------EEcCCCC---EEEEEECCCeEEEEECC
Q psy14440        481 ----------------DNTIRLWSLLLWRCLVVYKGHGHPVWDI---------KFSPHGY---YFASAGHDRMARLWATD  532 (711)
Q Consensus       481 ----------------Dg~V~iwdl~t~~~~~~~~~h~~~V~~v---------~~sp~g~---~l~sgs~Dg~i~lwd~~  532 (711)
                                      ...|...|.++++.+..++.+.+.+|+.         .+..++.   .++.++.+|.+.++|.+
T Consensus       255 ~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~  334 (571)
T d2ad6a1         255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE  334 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred             cccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecC
Confidence                            2457888999999998888654444322         1222343   56778899999999999


Q ss_pred             CCceeEEeecC-------------------------------------CCCe--eEEEEcCCCCEEEEEEcC--------
Q psy14440        533 SYHPLRLFVGH-------------------------------------YSDV--DCVQFHPNSNYVATGSSD--------  565 (711)
Q Consensus       533 ~~~~~~~~~~h-------------------------------------~~~V--~~v~~sp~~~~latgs~D--------  565 (711)
                      +++.+......                                     .+..  ...+++|+...+++...+        
T Consensus       335 tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~  414 (571)
T d2ad6a1         335 NGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPF  414 (571)
T ss_dssp             TCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred             CCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccc
Confidence            98876432110                                     0000  125667766666554322        


Q ss_pred             -----------------------------CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy14440        566 -----------------------------RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS  616 (711)
Q Consensus       566 -----------------------------g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~  616 (711)
                                                   |.|.-+|+.+|+.+-..... ....+-.++-.|.++++|+.||.++.+|.+
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~  493 (571)
T d2ad6a1         415 MLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             CCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             cccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECC
Confidence                                         45777888888877655421 111111122346788889999999999999


Q ss_pred             CCeEEEEeeCCCC-CEEEEEEeCCCC-EEEEEe
Q psy14440        617 NGHLLTLLTGHTD-VVRALCFSRDGN-ILASSG  647 (711)
Q Consensus       617 sg~~i~~l~~h~~-~V~sl~fspdg~-~Lasgs  647 (711)
                      +|+.+-++.-... .-.-+.|..||+ |+++..
T Consensus       494 tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         494 DGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             TCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCcEEEEEECCCCceecceEEEECCEEEEEEEe
Confidence            9999988863321 112255666886 554433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.46  E-value=0.0018  Score=66.71  Aligned_cols=148  Identities=11%  Similarity=0.111  Sum_probs=99.3

Q ss_pred             CCCEEEEEE-CCCeEEEEECCCCceeEEeec-CCCCeeEEEEc--CCCCEEEEEEcCC------------------cEEE
Q psy14440        513 HGYYFASAG-HDRMARLWATDSYHPLRLFVG-HYSDVDCVQFH--PNSNYVATGSSDR------------------TIRL  570 (711)
Q Consensus       513 ~g~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~-h~~~V~~v~~s--p~~~~latgs~Dg------------------~I~i  570 (711)
                      ||+|+++.. .+..|.+.|+++.+...++.. ....+..++..  |+..|+++++.+.                  .+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            677777665 788999999999988766543 34556766664  5677888877632                  3678


Q ss_pred             EECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCC---------------cEEEEEC--------------------
Q psy14440        571 WDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG---------------NVHMWDL--------------------  615 (711)
Q Consensus       571 wD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg---------------~I~iwDl--------------------  615 (711)
                      +|..+.+....+.- .+....++++++|+++++.+.+.               .+.++++                    
T Consensus       178 ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V  256 (459)
T d1fwxa2         178 VDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  256 (459)
T ss_dssp             EETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence            89988887666553 23566789999999999887431               2334443                    


Q ss_pred             ---CCC---eEEEEeeCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCCC
Q psy14440        616 ---SNG---HLLTLLTGHTDVVRALCFSRDGNILASSG-QDCSVKLWDFAKLSD  662 (711)
Q Consensus       616 ---~sg---~~i~~l~~h~~~V~sl~fspdg~~Lasgs-~Dg~V~iWdl~~~~~  662 (711)
                         ++.   ..++.+... .....+.++|||+++++++ .+.+|.|+|++++..
T Consensus       257 VD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~  309 (459)
T d1fwxa2         257 VDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA  309 (459)
T ss_dssp             EECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH
T ss_pred             ecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhh
Confidence               211   111111111 2245789999999887766 589999999986543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.42  E-value=0.019  Score=62.13  Aligned_cols=209  Identities=13%  Similarity=0.174  Sum_probs=130.6

Q ss_pred             CcEEEEEecCCCeeEEEeecc------------------------------cCCE-EEEEEcCCCCEEEEEeC-------
Q psy14440        439 DILVRIMDERNAETTRTLVGH------------------------------EGPV-RKLSFSPDRSLLLSCSQ-------  480 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h------------------------------~~~V-~~l~fspdg~~L~s~s~-------  480 (711)
                      .+.|.-+|..+++.+..+..-                              .+.+ ..+++.+....++.+..       
T Consensus       177 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~  256 (560)
T d1kv9a2         177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (560)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             cceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCccccc
Confidence            467999999999998776421                              1111 12455666666554321       


Q ss_pred             ------------CCeEEEEECCCCeEEEEEecCCCCEEEE---------EEcCCC---CEEEEEECCCeEEEEECCCCce
Q psy14440        481 ------------DNTIRLWSLLLWRCLVVYKGHGHPVWDI---------KFSPHG---YYFASAGHDRMARLWATDSYHP  536 (711)
Q Consensus       481 ------------Dg~V~iwdl~t~~~~~~~~~h~~~V~~v---------~~sp~g---~~l~sgs~Dg~i~lwd~~~~~~  536 (711)
                                  ...|...|+++++....++...+.+|..         ....++   ..++.++.+|.+.++|..+++.
T Consensus       257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~  336 (560)
T d1kv9a2         257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (560)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence                        2457778999999888887654444432         122233   3677788999999999999987


Q ss_pred             eEEeecCC----------------------------------C--CeeEEEEcCCCCEEEEEEcC---------------
Q psy14440        537 LRLFVGHY----------------------------------S--DVDCVQFHPNSNYVATGSSD---------------  565 (711)
Q Consensus       537 ~~~~~~h~----------------------------------~--~V~~v~~sp~~~~latgs~D---------------  565 (711)
                      +.....-.                                  +  .-...+++|+...+++...+               
T Consensus       337 i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~  416 (560)
T d1kv9a2         337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (560)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             cccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccc
Confidence            65432100                                  0  01134667766666654322               


Q ss_pred             ---------------------CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q psy14440        566 ---------------------RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLL  624 (711)
Q Consensus       566 ---------------------g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l  624 (711)
                                           |.|.-||+.+|+.+-.+.. .....+-.++-.|.++++|+.||.++.+|..+|+.+-++
T Consensus       417 ~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~  495 (560)
T d1kv9a2         417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (560)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccccCcccccCCCCcccccceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEE
Confidence                                 4678899999988766542 122222223445778889999999999999999999888


Q ss_pred             eCCCCC-EEEEEEeCCCC-EEEEEeC
Q psy14440        625 TGHTDV-VRALCFSRDGN-ILASSGQ  648 (711)
Q Consensus       625 ~~h~~~-V~sl~fspdg~-~Lasgs~  648 (711)
                      +...+. -.-+++..+|+ +|++.+.
T Consensus       496 ~l~~~~~~~P~ty~~dGkqyv~v~aG  521 (560)
T d1kv9a2         496 EAQSGIVAAPMTFELAGRQYVAIMAG  521 (560)
T ss_dssp             ECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             ECCCCccccCEEEEECCEEEEEEEeC
Confidence            743211 11245566786 5554443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.34  E-value=0.019  Score=62.74  Aligned_cols=206  Identities=13%  Similarity=0.143  Sum_probs=126.6

Q ss_pred             CcEEEEEecCCCeeEEEeeccc-------------------------------------CC-EEEEEEcCCCCEEEEEeC
Q psy14440        439 DILVRIMDERNAETTRTLVGHE-------------------------------------GP-VRKLSFSPDRSLLLSCSQ  480 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h~-------------------------------------~~-V~~l~fspdg~~L~s~s~  480 (711)
                      .+.|+-+|..+++.+.++....                                     +. -..+++.+....++.+..
T Consensus       181 ~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg  260 (596)
T d1w6sa_         181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (596)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccc
Confidence            5889999999999987754210                                     11 123455666666655533


Q ss_pred             ----------------CCeEEEEECCCCeEEEEEecCCCCEEE---------EEE-cCCC---CEEEEEECCCeEEEEEC
Q psy14440        481 ----------------DNTIRLWSLLLWRCLVVYKGHGHPVWD---------IKF-SPHG---YYFASAGHDRMARLWAT  531 (711)
Q Consensus       481 ----------------Dg~V~iwdl~t~~~~~~~~~h~~~V~~---------v~~-sp~g---~~l~sgs~Dg~i~lwd~  531 (711)
                                      ...|...|+.+++.+..++.....+|+         +.. ..+|   ..++.++.+|.+.++|.
T Consensus       261 ~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr  340 (596)
T d1w6sa_         261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (596)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecC
Confidence                            234788899999998888753333332         111 2234   36778889999999999


Q ss_pred             CCCceeEEeecCC--C-------------------------------------CeeEEEEcCCCCEEEEEEc--------
Q psy14440        532 DSYHPLRLFVGHY--S-------------------------------------DVDCVQFHPNSNYVATGSS--------  564 (711)
Q Consensus       532 ~~~~~~~~~~~h~--~-------------------------------------~V~~v~~sp~~~~latgs~--------  564 (711)
                      .+++.+.......  .                                     .-...+++|+..+++....        
T Consensus       341 ~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~  420 (596)
T d1w6sa_         341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  420 (596)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccc
Confidence            9998775332100  0                                     0012356665555544321        


Q ss_pred             -------------------------------CCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy14440        565 -------------------------------DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW  613 (711)
Q Consensus       565 -------------------------------Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iw  613 (711)
                                                     -|.|.-||+.+|+.+-... +...+.+-.++-.|.+++.|+.||.++.+
T Consensus       421 ~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~  499 (596)
T d1w6sa_         421 FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKAR  499 (596)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEE
T ss_pred             ccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEE
Confidence                                           1467788888888765543 12222222233457788899999999999


Q ss_pred             ECCCCeEEEEeeCCCC-CEEEEEEeCCCC-EEEE
Q psy14440        614 DLSNGHLLTLLTGHTD-VVRALCFSRDGN-ILAS  645 (711)
Q Consensus       614 Dl~sg~~i~~l~~h~~-~V~sl~fspdg~-~Las  645 (711)
                      |.++|+.+-++....+ .-.-+.|..+|+ |++.
T Consensus       500 Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav  533 (596)
T d1w6sa_         500 DSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI  533 (596)
T ss_dssp             ETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             ECCCCcEeeEEECCCCcccCCeEEEECCEEEEEE
Confidence            9999999988864321 111244556886 4544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.26  E-value=0.029  Score=60.77  Aligned_cols=230  Identities=10%  Similarity=0.009  Sum_probs=137.3

Q ss_pred             ccccccCCcEEEEEecCCCeeEEEeeccc----CCEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCeEEEEEecC
Q psy14440        432 DIEMECDDILVRIMDERNAETTRTLVGHE----GPVRKLSFSPDRSLLLSCS------QDNTIRLWSLLLWRCLVVYKGH  501 (711)
Q Consensus       432 ~l~~~~~d~~i~i~d~~~~~~~~~l~~h~----~~V~~l~fspdg~~L~s~s------~Dg~V~iwdl~t~~~~~~~~~h  501 (711)
                      .+.+.+.++.+.-.|..+++......-..    ..+++--.-.++ .++.+.      .+|.|+.+|+.+++.+..+...
T Consensus       117 ~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  195 (571)
T d2ad6a1         117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEecc
Confidence            45566778888888999998876553211    111111111133 344444      3688999999999999876532


Q ss_pred             -------------------------------------CCCEE-EEEEcCCCCEEEEEEC----------------CCeEE
Q psy14440        502 -------------------------------------GHPVW-DIKFSPHGYYFASAGH----------------DRMAR  527 (711)
Q Consensus       502 -------------------------------------~~~V~-~v~~sp~g~~l~sgs~----------------Dg~i~  527 (711)
                                                           ...+| ..++.+....+..+..                ...+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svv  275 (571)
T d2ad6a1         196 GSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIW  275 (571)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEE
T ss_pred             CCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccccee
Confidence                                                 11232 2345555555555443                34577


Q ss_pred             EEECCCCceeEEeecCCCCee---------EEEEcCCCC---EEEEEEcCCcEEEEECCCCcEEEEeeCC----------
Q psy14440        528 LWATDSYHPLRLFVGHYSDVD---------CVQFHPNSN---YVATGSSDRTIRLWDCVTGSHVRLLTGH----------  585 (711)
Q Consensus       528 lwd~~~~~~~~~~~~h~~~V~---------~v~~sp~~~---~latgs~Dg~I~iwD~~~~~~v~~~~~h----------  585 (711)
                      ..|.++++.+-.+.....++.         ...+..+++   .++.++.+|.+.++|..+|+.+......          
T Consensus       276 Ald~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~  355 (571)
T d2ad6a1         276 GRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVD  355 (571)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred             eeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccccc
Confidence            789999988877764333222         112222443   4677888999999999999876432110          


Q ss_pred             ---------------------------CCC--eEEEEEecCCCEEEEEeCC-----------------------------
Q psy14440        586 ---------------------------KAP--VYALSFSVCGRFLASAGGD-----------------------------  607 (711)
Q Consensus       586 ---------------------------~~~--I~~la~spdg~~Lasgs~D-----------------------------  607 (711)
                                                 .+.  -...+++|+...++....+                             
T Consensus       356 ~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (571)
T d2ad6a1         356 LKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGP  435 (571)
T ss_dssp             TTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECT
T ss_pred             ccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeecccc
Confidence                                       000  0124667776666543322                             


Q ss_pred             --------CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCc
Q psy14440        608 --------GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDE  663 (711)
Q Consensus       608 --------g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~  663 (711)
                              |.|.-+|+.+|+.+-....-.. ..+=..+-.+.++++|+.||.++-+|.++.+..
T Consensus       436 ~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~-~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         436 NGPTKKEMGQIRAFDLTTGKAKWTKWEKFA-AWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             TSTTSCCCEEEEEECTTTCCEEEEEEESSC-CCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCcccCCcccEEEeccCCCceeeEcCCCCC-CCcceeEecCCEEEEECCCCeEEEEECCCCcEE
Confidence                    4688889999988766542111 111112224668888999999999999886654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.25  E-value=0.021  Score=57.86  Aligned_cols=191  Identities=13%  Similarity=0.104  Sum_probs=101.0

Q ss_pred             ccCCEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCeEEEEEecC-CCCEEEEEEcCCCCEEEEEECC------CeEEEEE
Q psy14440        459 HEGPVRKLSFSPDRSLLLSCSQD-NTIRLWSLLLWRCLVVYKGH-GHPVWDIKFSPHGYYFASAGHD------RMARLWA  530 (711)
Q Consensus       459 h~~~V~~l~fspdg~~L~s~s~D-g~V~iwdl~t~~~~~~~~~h-~~~V~~v~~sp~g~~l~sgs~D------g~i~lwd  530 (711)
                      |.....+.++..++++++.|+.+ .++.+||..+..-...-... ...-..++...+|++++.|+.+      ..+.+||
T Consensus        74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd  153 (387)
T d1k3ia3          74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS  153 (387)
T ss_dssp             CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred             cccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeec
Confidence            33334566788999999988765 57999999776543321111 1122356667789999988753      3688999


Q ss_pred             CCCCceeEEee---------cCC-----CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEee--C----CC--CC
Q psy14440        531 TDSYHPLRLFV---------GHY-----SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT--G----HK--AP  588 (711)
Q Consensus       531 ~~~~~~~~~~~---------~h~-----~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~--~----h~--~~  588 (711)
                      ..+..=...-.         .+.     ..-..+...++++.++.+..++.+.++|..+......-.  .    +.  ..
T Consensus       154 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (387)
T d1k3ia3         154 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC  233 (387)
T ss_dssp             TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT
T ss_pred             CCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCccccc
Confidence            88653211100         000     011112233467777777777777888877664332211  0    11  11


Q ss_pred             eEEEEE-ecCCCEEEEEeCCC--------cEEEEECCC---CeEEEEeeC---CCCCEEEEEEeCCCCEEEEEeCC
Q psy14440        589 VYALSF-SVCGRFLASAGGDG--------NVHMWDLSN---GHLLTLLTG---HTDVVRALCFSRDGNILASSGQD  649 (711)
Q Consensus       589 I~~la~-spdg~~Lasgs~Dg--------~I~iwDl~s---g~~i~~l~~---h~~~V~sl~fspdg~~Lasgs~D  649 (711)
                      -.++.+ ..+++.++.|+...        ...+.++..   .........   +...-.+.+..+||++++.||.+
T Consensus       234 ~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~  309 (387)
T d1k3ia3         234 GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR  309 (387)
T ss_dssp             CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             ccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcc
Confidence            122222 24677777776321        233333322   111111111   11112345556799999998864

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.13  E-value=0.037  Score=59.80  Aligned_cols=232  Identities=9%  Similarity=0.036  Sum_probs=138.2

Q ss_pred             ccccccCCcEEEEEecCCCeeEEEeecccCC-EEEEEEcC--CCCEEEEEe------CCCeEEEEECCCCeEEEEEecC-
Q psy14440        432 DIEMECDDILVRIMDERNAETTRTLVGHEGP-VRKLSFSP--DRSLLLSCS------QDNTIRLWSLLLWRCLVVYKGH-  501 (711)
Q Consensus       432 ~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~-V~~l~fsp--dg~~L~s~s------~Dg~V~iwdl~t~~~~~~~~~h-  501 (711)
                      .+.....++.+.-.|..+++.+.....+... -..+.-.|  .+..++.++      ..|.|+.+|..+++.+-.+..- 
T Consensus       119 ~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~  198 (560)
T d1kv9a2         119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVP  198 (560)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred             eEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeecc
Confidence            3556667788888898899888776532210 01111111  122344433      2367999999999999887521 


Q ss_pred             -----------------------------CCCEE-EEEEcCCCCEEEEEEC-------------------CCeEEEEECC
Q psy14440        502 -----------------------------GHPVW-DIKFSPHGYYFASAGH-------------------DRMARLWATD  532 (711)
Q Consensus       502 -----------------------------~~~V~-~v~~sp~g~~l~sgs~-------------------Dg~i~lwd~~  532 (711)
                                                   ...+| .+.+.+...++..+..                   ...|.-.|.+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~  278 (560)
T d1kv9a2         199 GDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD  278 (560)
T ss_dssp             CCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT
T ss_pred             ccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCC
Confidence                                         11222 1345555555544321                   2356667888


Q ss_pred             CCceeEEeecCCCCee---------EEEEcCCC---CEEEEEEcCCcEEEEECCCCcEEEEeeCCC-C------------
Q psy14440        533 SYHPLRLFVGHYSDVD---------CVQFHPNS---NYVATGSSDRTIRLWDCVTGSHVRLLTGHK-A------------  587 (711)
Q Consensus       533 ~~~~~~~~~~h~~~V~---------~v~~sp~~---~~latgs~Dg~I~iwD~~~~~~v~~~~~h~-~------------  587 (711)
                      +++....+.....++.         -+.+..++   ..++.++.+|.+.++|..+|+.+.....-. .            
T Consensus       279 tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~  358 (560)
T d1kv9a2         279 TGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRP  358 (560)
T ss_dssp             TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCE
T ss_pred             ccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccc
Confidence            8887766654333322         12222233   356778889999999999998875432100 0            


Q ss_pred             -----------------------CeEEEEEecCCCEEEEEeC------------------------------------CC
Q psy14440        588 -----------------------PVYALSFSVCGRFLASAGG------------------------------------DG  608 (711)
Q Consensus       588 -----------------------~I~~la~spdg~~Lasgs~------------------------------------Dg  608 (711)
                                             .-...+++|+..+++....                                    .|
T Consensus       359 ~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G  438 (560)
T d1kv9a2         359 VEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSG  438 (560)
T ss_dssp             EECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEE
T ss_pred             cccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccccc
Confidence                                   0013456777666654332                                    25


Q ss_pred             cEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q psy14440        609 NVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEV  664 (711)
Q Consensus       609 ~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  664 (711)
                      .|.-||+.+|+.+-.+.... ...+-.++-.|.++++|+.||.++-+|..+.+...
T Consensus       439 ~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW  493 (560)
T d1kv9a2         439 ALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW  493 (560)
T ss_dssp             EEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeE
Confidence            68889999999887765221 11222234457788889999999999999876643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.12  E-value=0.064  Score=57.97  Aligned_cols=206  Identities=13%  Similarity=0.133  Sum_probs=126.0

Q ss_pred             CcEEEEEecCCCeeEEEeeccc-------------------------------CCE-EEEEEcCCCCEEEEEeC------
Q psy14440        439 DILVRIMDERNAETTRTLVGHE-------------------------------GPV-RKLSFSPDRSLLLSCSQ------  480 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h~-------------------------------~~V-~~l~fspdg~~L~s~s~------  480 (711)
                      .+.|+.+|..+++.+..+....                               +.+ ...++.++...++.+..      
T Consensus       189 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~  268 (573)
T d1kb0a2         189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (573)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             cceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCcccc
Confidence            5789999999999887653211                               112 12455566555554321      


Q ss_pred             -------------CCeEEEEECCCCeEEEEEecCCCCEEEEE---------EcCCC---CEEEEEECCCeEEEEECCCCc
Q psy14440        481 -------------DNTIRLWSLLLWRCLVVYKGHGHPVWDIK---------FSPHG---YYFASAGHDRMARLWATDSYH  535 (711)
Q Consensus       481 -------------Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~---------~sp~g---~~l~sgs~Dg~i~lwd~~~~~  535 (711)
                                   ...|...|.++++....++.....+|...         ...++   ..++.++.+|.+.++|..+++
T Consensus       269 ~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe  348 (573)
T d1kb0a2         269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (573)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             ccccccccccccccceEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccc
Confidence                         12477778888888877765433333222         12223   367778899999999999998


Q ss_pred             eeEEeecCCC-----------------------------------CeeEEEEcCCCCEEEEEEcC---------------
Q psy14440        536 PLRLFVGHYS-----------------------------------DVDCVQFHPNSNYVATGSSD---------------  565 (711)
Q Consensus       536 ~~~~~~~h~~-----------------------------------~V~~v~~sp~~~~latgs~D---------------  565 (711)
                      .+........                                   .-..++++|+..+++....+               
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~  428 (573)
T d1kb0a2         349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ  428 (573)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred             ccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeeccccccccc
Confidence            7654321100                                   01124677776666654322               


Q ss_pred             ----------------------------CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy14440        566 ----------------------------RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN  617 (711)
Q Consensus       566 ----------------------------g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~s  617 (711)
                                                  |.|.-||+.+|+.+-.+.... +...=..+-.|.+|++|+.||.++.||.++
T Consensus       429 ~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~T  507 (573)
T d1kb0a2         429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAAT  507 (573)
T ss_dssp             CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             CCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCC
Confidence                                        357778888888776665322 111112334688899999999999999999


Q ss_pred             CeEEEEeeCCCCCE-EEEEEeCCCC-EEEE
Q psy14440        618 GHLLTLLTGHTDVV-RALCFSRDGN-ILAS  645 (711)
Q Consensus       618 g~~i~~l~~h~~~V-~sl~fspdg~-~Las  645 (711)
                      |+.+-++....+.. .-+.|..+|+ |++.
T Consensus       508 Ge~LW~~~~~~~~~~~P~ty~~~GkQYv~v  537 (573)
T d1kb0a2         508 GEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (573)
T ss_dssp             CCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             CcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            99998886432111 1145566887 4444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.08  E-value=0.036  Score=60.01  Aligned_cols=230  Identities=9%  Similarity=0.025  Sum_probs=133.3

Q ss_pred             cccccCCcEEEEEecCCCeeEEEeecc--c-CCEEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCeEEEEEecC
Q psy14440        433 IEMECDDILVRIMDERNAETTRTLVGH--E-GPVRKLSFSP--DRSLLLSCSQ------DNTIRLWSLLLWRCLVVYKGH  501 (711)
Q Consensus       433 l~~~~~d~~i~i~d~~~~~~~~~l~~h--~-~~V~~l~fsp--dg~~L~s~s~------Dg~V~iwdl~t~~~~~~~~~h  501 (711)
                      +.+...++.+...|..+++.+......  . +.+. +.-.|  -+..+++++.      .|.|+.+|..+++.+..+...
T Consensus       131 v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  209 (573)
T d1kb0a2         131 VYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSV  209 (573)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEecccceeeeccccccceecccCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeec
Confidence            445666778888898899887655432  1 1111 10011  1334555432      478999999999998876421


Q ss_pred             C-------------------------------CCEE-EEEEcCCCCEEEEEEC-------------------CCeEEEEE
Q psy14440        502 G-------------------------------HPVW-DIKFSPHGYYFASAGH-------------------DRMARLWA  530 (711)
Q Consensus       502 ~-------------------------------~~V~-~v~~sp~g~~l~sgs~-------------------Dg~i~lwd  530 (711)
                      .                               ..+| ...+.+....+..+..                   ...+.-.|
T Consensus       210 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld  289 (573)
T d1kb0a2         210 PGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALD  289 (573)
T ss_dssp             CCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             cccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEec
Confidence            1                               1222 2344454444443321                   12455566


Q ss_pred             CCCCceeEEeecCCCC---------eeEEEEcCCC---CEEEEEEcCCcEEEEECCCCcEEEEeeCCCC-----------
Q psy14440        531 TDSYHPLRLFVGHYSD---------VDCVQFHPNS---NYVATGSSDRTIRLWDCVTGSHVRLLTGHKA-----------  587 (711)
Q Consensus       531 ~~~~~~~~~~~~h~~~---------V~~v~~sp~~---~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~-----------  587 (711)
                      .++++....+.....+         ........++   ..++.++.+|.+.++|..+|+.+........           
T Consensus       290 ~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~  369 (573)
T d1kb0a2         290 PDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGK  369 (573)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSC
T ss_pred             ccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccc
Confidence            7777766555432211         1222222233   3577788899999999999998764431100           


Q ss_pred             ------------------------CeEEEEEecCCCEEEEEeCC------------------------------------
Q psy14440        588 ------------------------PVYALSFSVCGRFLASAGGD------------------------------------  607 (711)
Q Consensus       588 ------------------------~I~~la~spdg~~Lasgs~D------------------------------------  607 (711)
                                              .-...+++|+..+++....+                                    
T Consensus       370 ~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  449 (573)
T d1kb0a2         370 PIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAE  449 (573)
T ss_dssp             EEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSS
T ss_pred             eeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccC
Confidence                                    01123567776665543221                                    


Q ss_pred             -------CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q psy14440        608 -------GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEV  664 (711)
Q Consensus       608 -------g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  664 (711)
                             |.|.-||+.+|+.+-..+... ...+=..+-.|.++++|+.||.++.+|.++.....
T Consensus       450 p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW  512 (573)
T d1kb0a2         450 PPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW  512 (573)
T ss_dssp             CCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeE
Confidence                   357788999999887776432 11111233467888899999999999999877653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.98  E-value=0.19  Score=48.80  Aligned_cols=225  Identities=12%  Similarity=0.161  Sum_probs=148.1

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC-CceeEEeecCC-
Q psy14440        467 SFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS-YHPLRLFVGHY-  544 (711)
Q Consensus       467 ~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~-~~~~~~~~~h~-  544 (711)
                      -.+|..+.|+.-+ ..++.+||+++.+.++.+.- ...|.--.|-.+. .|+..+ +..|+-|+++. ..+.+.|..|. 
T Consensus        69 IMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~  144 (327)
T d1utca2          69 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSS  144 (327)
T ss_dssp             EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGG
T ss_pred             hcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhccc
Confidence            3457777666555 45799999999999998874 4466566776544 555554 46799999954 35777777654 


Q ss_pred             ---CCeeEEEEcCCCCEEEEEE-------cCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCC---CEEEEE---eCCC
Q psy14440        545 ---SDVDCVQFHPNSNYVATGS-------SDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCG---RFLASA---GGDG  608 (711)
Q Consensus       545 ---~~V~~v~~sp~~~~latgs-------~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg---~~Lasg---s~Dg  608 (711)
                         ..|-....+++.++++..+       -.|.+.+|.+..+ .-+.+.||.+....+.+..+.   ..++.+   ...+
T Consensus       145 L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~  223 (327)
T d1utca2         145 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  223 (327)
T ss_dssp             GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEE
T ss_pred             ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCc
Confidence               4577778888899877543       2367889997655 456777776655554433211   122222   2336


Q ss_pred             cEEEEECCCC--------eEEEEee----CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCccCccccccccccc
Q psy14440        609 NVHMWDLSNG--------HLLTLLT----GHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSAD  676 (711)
Q Consensus       609 ~I~iwDl~sg--------~~i~~l~----~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~  676 (711)
                      +++|.++.+.        +....+.    .-.+---++..|..-.++..-+.-|.|++||+.+.+.....          
T Consensus       224 kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~n----------  293 (327)
T d1utca2         224 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN----------  293 (327)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE----------
T ss_pred             EEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEe----------
Confidence            8999988652        1111221    12345668888988889999999999999999986654321          


Q ss_pred             cccccccceeeecccCCcceEEEEEccCCeeee
Q psy14440        677 IKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR  709 (711)
Q Consensus       677 ~~~~~~~~~l~~~~t~~~pV~~v~Fs~~n~lla  709 (711)
                       +.+.....+.+..++...|++|.  ++|++|.
T Consensus       294 -RIs~~~iF~~a~~~~~~Gi~~VN--r~GqVl~  323 (327)
T d1utca2         294 -RISGETIFVTAPHEATAGIIGVN--RKGQVLS  323 (327)
T ss_dssp             -ECCSSCEEEEEEETTTTEEEEEE--TTSEEEE
T ss_pred             -ecCCCceEEeccCCCCceEEEEC--CCCeEEE
Confidence             11234445666777777787765  7888775

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.95  E-value=0.2  Score=48.63  Aligned_cols=212  Identities=11%  Similarity=0.119  Sum_probs=135.7

Q ss_pred             CcEEEEEecCCCeeEEEeecccCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEEecC----CCCEEEEEEcCC
Q psy14440        439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL-WRCLVVYKGH----GHPVWDIKFSPH  513 (711)
Q Consensus       439 d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t-~~~~~~~~~h----~~~V~~v~~sp~  513 (711)
                      ...++++|.++.+.++.+.-.. .|.--.|-.+. .|+-.+. ..|+-|+++. ....+.+..|    +..|..-..+++
T Consensus        82 g~~LQiFnletK~klks~~~~e-~VvfWkWis~~-~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~  158 (327)
T d1utca2          82 GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAK  158 (327)
T ss_dssp             TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSS-EEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTT
T ss_pred             CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCC-EEEEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCC
Confidence            3456666666666666665433 56667786544 4444433 4599999953 2456666655    346777777888


Q ss_pred             CCEEEEEE-------CCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCC---CEEEEEE---cCCcEEEEECCCCc---
Q psy14440        514 GYYFASAG-------HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNS---NYVATGS---SDRTIRLWDCVTGS---  577 (711)
Q Consensus       514 g~~l~sgs-------~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~---~~latgs---~Dg~I~iwD~~~~~---  577 (711)
                      +++++..|       -.|.+.+|+.+.+ .-+.+.||.+....+.+..+.   ..++.+.   ..+++.|.++....   
T Consensus       159 ~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~  237 (327)
T d1utca2         159 QKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN  237 (327)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTC
T ss_pred             CCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCC
Confidence            88877654       2367889998864 456677776555444443221   2232222   23678888885421   


Q ss_pred             ------EEEEeeC---CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeC
Q psy14440        578 ------HVRLLTG---HKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       578 ------~v~~~~~---h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~  648 (711)
                            .+-.+..   -..--.++..|..-..+..-+.-|.|++||+.+|.++..-+--...|..-+-+.+..=+++...
T Consensus       238 ~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr  317 (327)
T d1utca2         238 QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNR  317 (327)
T ss_dssp             CCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECC
Confidence                  1112211   1344567888888888999999999999999999999888776777776565655555666667


Q ss_pred             CCcEEE
Q psy14440        649 DCSVKL  654 (711)
Q Consensus       649 Dg~V~i  654 (711)
                      +|.|.-
T Consensus       318 ~GqVl~  323 (327)
T d1utca2         318 KGQVLS  323 (327)
T ss_dssp             TSEEEE
T ss_pred             CCeEEE
Confidence            777643

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.92  E-value=0.13  Score=55.53  Aligned_cols=80  Identities=23%  Similarity=0.396  Sum_probs=54.5

Q ss_pred             CcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeeCCCCC-EEEEEEeCCCC-EE
Q psy14440        566 RTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHLLTLLTGHTDV-VRALCFSRDGN-IL  643 (711)
Q Consensus       566 g~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~i~~l~~h~~~-V~sl~fspdg~-~L  643 (711)
                      |.|.-+|+.+|+.+-.+..+. ++..-.++..|.++++|+.||.++.+|.++|+.+-+++-..+. -.-+.|..+|+ |+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            568888999998877765332 2222223456778889999999999999999999888743211 11256677886 44


Q ss_pred             EEE
Q psy14440        644 ASS  646 (711)
Q Consensus       644 asg  646 (711)
                      +..
T Consensus       545 ~i~  547 (582)
T d1flga_         545 GVT  547 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.90  E-value=0.051  Score=59.12  Aligned_cols=230  Identities=10%  Similarity=-0.005  Sum_probs=137.5

Q ss_pred             cccccCCcEEEEEecCCCeeEEEeeccc---C-CEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeEEEEEecCC
Q psy14440        433 IEMECDDILVRIMDERNAETTRTLVGHE---G-PVRKLSFSPDRSLLLSCSQ------DNTIRLWSLLLWRCLVVYKGHG  502 (711)
Q Consensus       433 l~~~~~d~~i~i~d~~~~~~~~~l~~h~---~-~V~~l~fspdg~~L~s~s~------Dg~V~iwdl~t~~~~~~~~~h~  502 (711)
                      +..+..++.+.-.|..+++.+..+....   + .+++--.- -+..+++++.      .|.|+.+|..+++.+..+....
T Consensus       124 v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~  202 (596)
T d1w6sa_         124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG  202 (596)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             EEEEeCCCCeEeeccccCceeccccccccccccccccCCcE-ECCeEEEeeccccccccCceEEEECCCCcEEEEeeccC
Confidence            5667778888889999999988775321   1 11110000 1334555543      4889999999999998765211


Q ss_pred             -------------------------------------CCEE-EEEEcCCCCEEEEEEC----------------CCeEEE
Q psy14440        503 -------------------------------------HPVW-DIKFSPHGYYFASAGH----------------DRMARL  528 (711)
Q Consensus       503 -------------------------------------~~V~-~v~~sp~g~~l~sgs~----------------Dg~i~l  528 (711)
                                                           ..+| .+.+.+....+..+..                ...+.-
T Consensus       203 ~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivA  282 (596)
T d1w6sa_         203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG  282 (596)
T ss_dssp             CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred             CccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccc
Confidence                                                 1122 2344555555554432                234777


Q ss_pred             EECCCCceeEEeecCCCC---------eeEEEE-cCCC---CEEEEEEcCCcEEEEECCCCcEEEEeeCCC--C------
Q psy14440        529 WATDSYHPLRLFVGHYSD---------VDCVQF-HPNS---NYVATGSSDRTIRLWDCVTGSHVRLLTGHK--A------  587 (711)
Q Consensus       529 wd~~~~~~~~~~~~h~~~---------V~~v~~-sp~~---~~latgs~Dg~I~iwD~~~~~~v~~~~~h~--~------  587 (711)
                      .|.++++.+-.+.....+         ...+.. ..+|   ..++.+..+|.+.++|..+|+.+.......  .      
T Consensus       283 lD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d  362 (596)
T d1w6sa_         283 RDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD  362 (596)
T ss_dssp             EETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred             cccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccccccccc
Confidence            899999887766532221         112221 2244   357778889999999999998875432100  0      


Q ss_pred             ------------------C-------------eEEEEEecCCCEEEEEeC------------------------------
Q psy14440        588 ------------------P-------------VYALSFSVCGRFLASAGG------------------------------  606 (711)
Q Consensus       588 ------------------~-------------I~~la~spdg~~Lasgs~------------------------------  606 (711)
                                        .             -...+++|+..+++....                              
T Consensus       363 ~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~  442 (596)
T d1w6sa_         363 LKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGP  442 (596)
T ss_dssp             TTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECT
T ss_pred             ccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCc
Confidence                              0             012355555555443321                              


Q ss_pred             ---------CCcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q psy14440        607 ---------DGNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEV  664 (711)
Q Consensus       607 ---------Dg~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  664 (711)
                               -|.|.-||+.+|+.+-..... ..+.+=.++-.|.+++.|+.||.++.+|.++.+...
T Consensus       443 ~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW  508 (596)
T d1w6sa_         443 KGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW  508 (596)
T ss_dssp             TSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccCcccCCCcceEEEEeCCCCceecccCCC-CCCccceeEecCCEEEEECCCCeEEEEECCCCcEee
Confidence                     156888899999887655321 112222233457788889999999999999876643

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.87  E-value=0.027  Score=56.92  Aligned_cols=228  Identities=7%  Similarity=-0.024  Sum_probs=118.8

Q ss_pred             EEEEECCCCCEEEEEeCC-CeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEEc
Q psy14440        391 TCAEISEDVSILAVGFSE-SYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFS  469 (711)
Q Consensus       391 ~~l~fs~dg~~LatG~~d-g~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~fs  469 (711)
                      .+.++..||++++.|+.+ ..+.+||..+..-....                             .+.. ...-.+++..
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~-----------------------------~~~~-~r~~~~~~~~  128 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-----------------------------DMQV-ARGYQSSATM  128 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-----------------------------CCSS-CCSSCEEEEC
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCcccccc-----------------------------cccc-cccccceeee
Confidence            456788999999998765 47888887544322110                             0000 1112345667


Q ss_pred             CCCCEEEEEeCC------CeEEEEECCCCeEEEEEec---------CCC-----CEEEEEEcCCCCEEEEEECCCeEEEE
Q psy14440        470 PDRSLLLSCSQD------NTIRLWSLLLWRCLVVYKG---------HGH-----PVWDIKFSPHGYYFASAGHDRMARLW  529 (711)
Q Consensus       470 pdg~~L~s~s~D------g~V~iwdl~t~~~~~~~~~---------h~~-----~V~~v~~sp~g~~l~sgs~Dg~i~lw  529 (711)
                      .||+.++.|+.+      ..+.+||..+.+-...-..         +..     .-..+...++|+.++.++.++.+.++
T Consensus       129 ~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~  208 (387)
T d1k3ia3         129 SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYY  208 (387)
T ss_dssp             TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEE
T ss_pred             cCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEec
Confidence            789988888753      3589999876543221000         000     00112233467777777777777777


Q ss_pred             ECCCCceeEEee--c----CCC--CeeEEEEc-CCCCEEEEEEcC--------CcEEEEECCC---CcEEEEeeC---CC
Q psy14440        530 ATDSYHPLRLFV--G----HYS--DVDCVQFH-PNSNYVATGSSD--------RTIRLWDCVT---GSHVRLLTG---HK  586 (711)
Q Consensus       530 d~~~~~~~~~~~--~----h~~--~V~~v~~s-p~~~~latgs~D--------g~I~iwD~~~---~~~v~~~~~---h~  586 (711)
                      +..+......-.  .    +..  .-.++.+. .+++.++.|+..        ....+.++..   .........   +.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  288 (387)
T d1k3ia3         209 TSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA  288 (387)
T ss_dssp             CSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC
T ss_pred             CcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccc
Confidence            777654322111  0    111  11223332 356667766532        1233343322   111111111   11


Q ss_pred             CCeEEEEEecCCCEEEEEeCCC-----------cEEEEECCCCeEEE--EeeCCCCCEEEEEEeCCCCEEEEEeC
Q psy14440        587 APVYALSFSVCGRFLASAGGDG-----------NVHMWDLSNGHLLT--LLTGHTDVVRALCFSRDGNILASSGQ  648 (711)
Q Consensus       587 ~~I~~la~spdg~~Lasgs~Dg-----------~I~iwDl~sg~~i~--~l~~h~~~V~sl~fspdg~~Lasgs~  648 (711)
                      ..-.+.+..+||++++.|+.++           ++.+||..+.+-..  .+......-....+.+||++|+.||.
T Consensus       289 r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         289 RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence            1223455568999999988531           47899988765322  12111111122345789999999984

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.43  E-value=0.22  Score=49.89  Aligned_cols=189  Identities=17%  Similarity=0.241  Sum_probs=117.9

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEc------CCCCEEEEEE-C-C--CeEEEEECCC-CceeE
Q psy14440        470 PDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFS------PHGYYFASAG-H-D--RMARLWATDS-YHPLR  538 (711)
Q Consensus       470 pdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~s------p~g~~l~sgs-~-D--g~i~lwd~~~-~~~~~  538 (711)
                      |+..+++....++-|.+||+. |+.+..+.  .+.+..|..-      ....-+++++ + +  .+|.+|.++. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            355677777777779999996 77776654  3455555443      1222345555 2 2  3677887753 22333


Q ss_pred             Eeec-------CCCCeeEEEE--cCC-CC-EEEEEEcCCcEEEEECC---CC----cEEEEeeCCCCCeEEEEEecCCCE
Q psy14440        539 LFVG-------HYSDVDCVQF--HPN-SN-YVATGSSDRTIRLWDCV---TG----SHVRLLTGHKAPVYALSFSVCGRF  600 (711)
Q Consensus       539 ~~~~-------h~~~V~~v~~--sp~-~~-~latgs~Dg~I~iwD~~---~~----~~v~~~~~h~~~I~~la~spdg~~  600 (711)
                      .+..       ....+..+|+  ++. +. ++++...+|.+..|.+.   .+    +.++.|. -...+..+.+......
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGS  193 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCc
Confidence            3322       1234677777  553 44 56666778998888662   33    3456665 3457889999999899


Q ss_pred             EEEEeCCCcEEEEECC-----CCeEEEEeeC--CCCCEEEEEEeC--C--CCEEEEEeCCCcEEEEeCCCCCC
Q psy14440        601 LASAGGDGNVHMWDLS-----NGHLLTLLTG--HTDVVRALCFSR--D--GNILASSGQDCSVKLWDFAKLSD  662 (711)
Q Consensus       601 Lasgs~Dg~I~iwDl~-----sg~~i~~l~~--h~~~V~sl~fsp--d--g~~Lasgs~Dg~V~iWdl~~~~~  662 (711)
                      |+.+-++..|..++..     .+..+....+  ..+.+-.|+.-.  +  |-+|+|.-.+++..|||......
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~  266 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNK  266 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred             EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCcc
Confidence            9999888777666653     2344444433  356788888653  3  33555555788999999876433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.21  E-value=0.61  Score=49.96  Aligned_cols=56  Identities=18%  Similarity=0.182  Sum_probs=40.6

Q ss_pred             CcEEEEECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q psy14440        608 GNVHMWDLSNGHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEV  664 (711)
Q Consensus       608 g~I~iwDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  664 (711)
                      |.|.-+|+.+|+.+-....+. ++.+-..+..|.++++|+.||.++-+|.++.+...
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW  521 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELW  521 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeE
Confidence            578889999999887776433 22222234467788889999999999998876543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.13  E-value=0.9  Score=46.39  Aligned_cols=198  Identities=14%  Similarity=0.058  Sum_probs=110.2

Q ss_pred             CEEEEEEcCCCCEEEEE-eCC----CeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECC-------------
Q psy14440        462 PVRKLSFSPDRSLLLSC-SQD----NTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD-------------  523 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~-s~D----g~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~D-------------  523 (711)
                      .+.++++|||+++++.+ +.+    .+|+++|+.+++.+...-. ......++|++++..|+....+             
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            34566789999988743 223    4699999999987652211 1112458899999877765432             


Q ss_pred             ---CeEEEEECCCCce--eEEeecCC--CCeeEEEEcCCCCEEEEEEc---CCcEE--EEECCCCc--------EEEEee
Q psy14440        524 ---RMARLWATDSYHP--LRLFVGHY--SDVDCVQFHPNSNYVATGSS---DRTIR--LWDCVTGS--------HVRLLT  583 (711)
Q Consensus       524 ---g~i~lwd~~~~~~--~~~~~~h~--~~V~~v~~sp~~~~latgs~---Dg~I~--iwD~~~~~--------~v~~~~  583 (711)
                         ..|..|.+.+...  ...+....  ..+..+..+.++++++....   ++...  +.|+....        ....+.
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  284 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence               2577777766532  33444333  34566778899999875443   23334  44543221        122333


Q ss_pred             CCCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCCCeE---EEEeeCCCCCEEEEEEeCCCCEEEEE-eCCC--cEEE
Q psy14440        584 GHKAPVYALSFSVCGRFLASAG---GDGNVHMWDLSNGHL---LTLLTGHTDVVRALCFSRDGNILASS-GQDC--SVKL  654 (711)
Q Consensus       584 ~h~~~I~~la~spdg~~Lasgs---~Dg~I~iwDl~sg~~---i~~l~~h~~~V~sl~fspdg~~Lasg-s~Dg--~V~i  654 (711)
                      .....+.-+. +.++.+++...   .++.|...++.+...   ...+..+...+..-.++..+++|+.. -.++  .|++
T Consensus       285 ~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v  363 (430)
T d1qfma1         285 NFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL  363 (430)
T ss_dssp             SSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred             ccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEE
Confidence            3333333332 33344444443   246777777765431   22233444555544455455666554 4554  4888


Q ss_pred             EeCCCCC
Q psy14440        655 WDFAKLS  661 (711)
Q Consensus       655 Wdl~~~~  661 (711)
                      +++....
T Consensus       364 ~~~~~~~  370 (430)
T d1qfma1         364 HDLATGA  370 (430)
T ss_dssp             EETTTCC
T ss_pred             EECCCCc
Confidence            8887543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.74  E-value=1.3  Score=45.58  Aligned_cols=46  Identities=11%  Similarity=-0.034  Sum_probs=35.0

Q ss_pred             ceEEEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy14440        377 SIACYTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLK  422 (711)
Q Consensus       377 s~~~~tl~~h~~~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~  422 (711)
                      ..+...+...-+.-++|+|.+||++|++--..|.|++++..+....
T Consensus        16 ~f~~~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~   61 (450)
T d1crua_          16 NFDKKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVK   61 (450)
T ss_dssp             TSCEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred             CcEEEEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEe
Confidence            3455556666678889999999999988766789999887665543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.18  Score=51.19  Aligned_cols=176  Identities=13%  Similarity=-0.013  Sum_probs=102.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECC-----------CCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLL-----------LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA  530 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg~V~iwdl~-----------t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd  530 (711)
                      ...-++.+....+++.|+.++ +.|..+.           .........  -..|..++|+.+  .++.. .++.+..++
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            455678887777888888775 6677641           111111111  235888999744  55554 456678888


Q ss_pred             CCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC-----CCCCeEEEEEecCCCEEEEEe
Q psy14440        531 TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG-----HKAPVYALSFSVCGRFLASAG  605 (711)
Q Consensus       531 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~-----h~~~I~~la~spdg~~Lasgs  605 (711)
                      ............-...+..+.++|+  .++....+|.+.++++..++......+     -.+.+.+++|++.|+.++++.
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         112 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             eeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            7765544444444566777777664  577777899999999998865443221     135577777777777777664


Q ss_pred             CCCcEEE-EECCCCeEEEEeeCCCCCEEEEEEeCCCCEEEEE
Q psy14440        606 GDGNVHM-WDLSNGHLLTLLTGHTDVVRALCFSRDGNILASS  646 (711)
Q Consensus       606 ~Dg~I~i-wDl~sg~~i~~l~~h~~~V~sl~fspdg~~Lasg  646 (711)
                      .++ ..+ -++.....+.........|.+|.|-.+..++++-
T Consensus       190 g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         190 NGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             TTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            322 111 1111111000001123467888888666666654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.56  E-value=0.84  Score=41.60  Aligned_cols=219  Identities=15%  Similarity=0.116  Sum_probs=119.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeeccCccc---------------cccccccCCcEEEEEecCCCeeEEEeeccc-C
Q psy14440        398 DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL---------------QDIEMECDDILVRIMDERNAETTRTLVGHE-G  461 (711)
Q Consensus       398 dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~---------------~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-~  461 (711)
                      +.++|++++..|.|.++-+.+.+...+...+-.               ..+.-+.+...+++.+....-....+.... -
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~v  104 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPM  104 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCSSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCSB
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEecccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCceE
Confidence            445888999999999999988876654332211               111122223333443433212222222222 3


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCCEEEEEEcCCCCEEEEEE----CCCeEEEEECCCCce
Q psy14440        462 PVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG-HGHPVWDIKFSPHGYYFASAG----HDRMARLWATDSYHP  536 (711)
Q Consensus       462 ~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~-h~~~V~~v~~sp~g~~l~sgs----~Dg~i~lwd~~~~~~  536 (711)
                      .|.+++.. |.+..++|+....+.+|-++.++......- .-+.|+++.    +++++-.+    ......+-|+.++ .
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~----~d~I~G~g~~~g~~~sfF~adl~SG-~  178 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR----GDLIAGLGFFGGGRVSLFTSNLSSG-G  178 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE----TTEEEEEEEEETTEEEEEEEETTTE-E
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEecc----CCeEEEEeeecCCcceEEEEecccC-C
Confidence            46666664 445677777777788888887765443221 123344442    33333211    1111222233332 2


Q ss_pred             eEEeecCCCCeeEEEEcCCCCEEEEEEc---CCcEEEEECCCCcEEEEeeC-------CCCCeEEEEEecCCCEEEEEeC
Q psy14440        537 LRLFVGHYSDVDCVQFHPNSNYVATGSS---DRTIRLWDCVTGSHVRLLTG-------HKAPVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       537 ~~~~~~h~~~V~~v~~sp~~~~latgs~---Dg~I~iwD~~~~~~v~~~~~-------h~~~I~~la~spdg~~Lasgs~  606 (711)
                      +++|....+.++.....+..+. +++-.   .....-+|.++++.-+.-..       ....|+-+-+.|++++++.+-.
T Consensus       179 lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakr  257 (313)
T d2hu7a1         179 LRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR  257 (313)
T ss_dssp             EEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred             EEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEec
Confidence            4455555555666666654443 44332   12233558888776543211       2345677779999999999999


Q ss_pred             CCcEEEEECCCCeEEEEee
Q psy14440        607 DGNVHMWDLSNGHLLTLLT  625 (711)
Q Consensus       607 Dg~I~iwDl~sg~~i~~l~  625 (711)
                      ||.=++|+  +|+.+..-.
T Consensus       258 dG~s~lF~--nGk~in~p~  274 (313)
T d2hu7a1         258 EGRSAVFI--DGERVEAPQ  274 (313)
T ss_dssp             TTEEEEEE--TTEEECCCS
T ss_pred             CCchheee--cceEecCCC
Confidence            99999997  677765443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.40  E-value=0.21  Score=50.61  Aligned_cols=187  Identities=12%  Similarity=0.016  Sum_probs=105.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeccCccccccccccCCcEEEEEecCCCeeEEEeecccCCEEEEEE
Q psy14440        389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSF  468 (711)
Q Consensus       389 ~V~~l~fs~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~V~~l~f  468 (711)
                      ..+-+++++...++++|+.++ ++|-.+..  ++.....         ...+       ...+....    -..|..++|
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~--l~~~~~~---------~~~~-------~~~~~~~~----ip~v~~vaf   94 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQL--LRDHITS---------DSTP-------LTFKWEKE----IPDVIFVCF   94 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHH--HHHHHHS---------SSCC-------CCCSEEEE----CTTEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHH--HHHHhhc---------cCCC-------CcceeccC----CCCeEEEEe
Confidence            355788888888999888886 56665421  1100000         0000       00111111    125888999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEeec-----C
Q psy14440        469 SPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG-----H  543 (711)
Q Consensus       469 spdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~~-----h  543 (711)
                      +.|  .|+.. .++.+..++............-..++..+.++|.  .++....++.+.++++..++......+     -
T Consensus        95 s~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~  169 (381)
T d1xipa_          95 HGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDV  169 (381)
T ss_dssp             ETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEE
T ss_pred             eCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEe
Confidence            755  45544 4556888888765555444445677888888875  577777899999999988765433221     2


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEE-ECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEE
Q psy14440        544 YSDVDCVQFHPNSNYVATGSSDRTIRLW-DCVTGSHVRLLTGHKAPVYALSFSVCGRFLASA  604 (711)
Q Consensus       544 ~~~V~~v~~sp~~~~latgs~Dg~I~iw-D~~~~~~v~~~~~h~~~I~~la~spdg~~Lasg  604 (711)
                      .+.+.|++|++.|..++++..++ ..+. ++.....+.........|.+|.|-.+..++++-
T Consensus       170 ~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         170 TNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             CSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            35577777777777777664322 1111 111110000001134467888888776666654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.33  E-value=0.23  Score=49.55  Aligned_cols=181  Identities=12%  Similarity=0.103  Sum_probs=100.1

Q ss_pred             EEEEEcCCCCEEEEEeC------------CCeEEEEECCCCeEEE---EEecCC-----CCEEEEEE--cCCCC-EEEEE
Q psy14440        464 RKLSFSPDRSLLLSCSQ------------DNTIRLWSLLLWRCLV---VYKGHG-----HPVWDIKF--SPHGY-YFASA  520 (711)
Q Consensus       464 ~~l~fspdg~~L~s~s~------------Dg~V~iwdl~t~~~~~---~~~~h~-----~~V~~v~~--sp~g~-~l~sg  520 (711)
                      -.+...++|..+++++.            .|.|.++|+.+.....   .+.+..     ..-..+..  ..+|. +|++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            35666677766665532            4889999986543211   122111     11233333  33454 44444


Q ss_pred             E---CCCeEEEEECCCCce-eE---Eee-cCCCCeeEEEEcCCCCEEEEEEc---------------CCcEEEEECCCCc
Q psy14440        521 G---HDRMARLWATDSYHP-LR---LFV-GHYSDVDCVQFHPNSNYVATGSS---------------DRTIRLWDCVTGS  577 (711)
Q Consensus       521 s---~Dg~i~lwd~~~~~~-~~---~~~-~h~~~V~~v~~sp~~~~latgs~---------------Dg~I~iwD~~~~~  577 (711)
                      .   ...+|.+|++..... +.   .+. ......+.|++..++.+++|-..               -++..+|....++
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~  197 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  197 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence            3   345677777653321 11   121 12344678888888888887321               1234455544444


Q ss_pred             EEEEeeCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeE---EEEeeCCCCCEEEEEEeC-CCCEEEEE
Q psy14440        578 HVRLLTGHKAPVYALSFSVCGRFLASAG-GDGNVHMWDLSNGHL---LTLLTGHTDVVRALCFSR-DGNILASS  646 (711)
Q Consensus       578 ~v~~~~~h~~~I~~la~spdg~~Lasgs-~Dg~I~iwDl~sg~~---i~~l~~h~~~V~sl~fsp-dg~~Lasg  646 (711)
                      .. .....-...+.|++++|+++|+++. ..++|++|++.....   ...+. -.+..-.+.+.+ +|.+.+.+
T Consensus       198 ~~-~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         198 VR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred             eE-EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEE
Confidence            33 3323345678999999998877664 567899999865432   22222 345567788876 45544443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.14  Score=48.93  Aligned_cols=103  Identities=15%  Similarity=0.135  Sum_probs=52.6

Q ss_pred             CCCEEEEEEcC-----CcEEEEECCCCcEEEEeeCCC-CCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeEEEE
Q psy14440        555 NSNYVATGSSD-----RTIRLWDCVTGSHVRLLTGHK-APVYALSFSVCGRFLASAGGD-----GNVHMWDLSNGHLLTL  623 (711)
Q Consensus       555 ~~~~latgs~D-----g~I~iwD~~~~~~v~~~~~h~-~~I~~la~spdg~~Lasgs~D-----g~I~iwDl~sg~~i~~  623 (711)
                      ++..++.|+.+     ..+..||..+++....-.... ....+.+. .+++.++.|+.+     ..+.++|..+.+....
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~  226 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV  226 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             eecceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecc
Confidence            34455555543     457888887765332211111 11112222 345666666544     3567888877664432


Q ss_pred             eeCCCCCE-EEEEEeCCCCEEEEEeCCCc-----EEEEeCCC
Q psy14440        624 LTGHTDVV-RALCFSRDGNILASSGQDCS-----VKLWDFAK  659 (711)
Q Consensus       624 l~~h~~~V-~sl~fspdg~~Lasgs~Dg~-----V~iWdl~~  659 (711)
                      -....... .+++. -++++++.||.++.     |.+||+.+
T Consensus       227 ~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~  267 (288)
T d1zgka1         227 APMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDT  267 (288)
T ss_dssp             CCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             cCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCC
Confidence            22111111 12232 36788888876543     67788765

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.43  E-value=1.6  Score=43.30  Aligned_cols=186  Identities=12%  Similarity=0.106  Sum_probs=109.3

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeeeccC--------------ccccccccccC----CcEEEEEecC-CCeeEEEee
Q psy14440        397 EDVSILAVGFSESYIKLWSLVPQKLKAMKSS--------------DQLQDIEMECD----DILVRIMDER-NAETTRTLV  457 (711)
Q Consensus       397 ~dg~~LatG~~dg~I~vWdl~~~~~~~~~~~--------------~~~~~l~~~~~----d~~i~i~d~~-~~~~~~~l~  457 (711)
                      |+.++++....++-|.+|++.+..+..+...              .....+++.++    ...+.+|... .......+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~  117 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT  117 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence            3556777777777799999987766544321              11112333332    2356566543 222233332


Q ss_pred             cc-------cCCEEEEEE--cCC-CC-EEEEEeCCCeEEEEECC---CC----eEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy14440        458 GH-------EGPVRKLSF--SPD-RS-LLLSCSQDNTIRLWSLL---LW----RCLVVYKGHGHPVWDIKFSPHGYYFAS  519 (711)
Q Consensus       458 ~h-------~~~V~~l~f--spd-g~-~L~s~s~Dg~V~iwdl~---t~----~~~~~~~~h~~~V~~v~~sp~g~~l~s  519 (711)
                      ..       ...|+++|+  ++. |. ++++...+|.+..|.+.   .+    +.++.+. -...+..|.+......|..
T Consensus       118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~Lyi  196 (353)
T d1h6la_         118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYI  196 (353)
T ss_dssp             CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred             ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEE
Confidence            21       124778887  554 44 56667778999888762   22    3444554 3567889999998889999


Q ss_pred             EECCCeEEEEECCC--Cc---eeEEeec--CCCCeeEEEEcC--CCC-EEEEEE-cCCcEEEEECCCC-cEEEEee
Q psy14440        520 AGHDRMARLWATDS--YH---PLRLFVG--HYSDVDCVQFHP--NSN-YVATGS-SDRTIRLWDCVTG-SHVRLLT  583 (711)
Q Consensus       520 gs~Dg~i~lwd~~~--~~---~~~~~~~--h~~~V~~v~~sp--~~~-~latgs-~Dg~I~iwD~~~~-~~v~~~~  583 (711)
                      +-++.-+..++.+-  ..   .+....+  ...++..++.-.  ++. ||++++ .+++..|||..+. +.+..|.
T Consensus       197 sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             ecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            88887776666542  11   1212222  456788888643  323 666555 5788999998763 5554543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.61  E-value=1.8  Score=44.37  Aligned_cols=105  Identities=14%  Similarity=0.177  Sum_probs=61.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEee--------cCCCCeeEEEEcCC---CCEEEEEEc------
Q psy14440        502 GHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFV--------GHYSDVDCVQFHPN---SNYVATGSS------  564 (711)
Q Consensus       502 ~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~~--------~h~~~V~~v~~sp~---~~~latgs~------  564 (711)
                      -..-|+|+|.|+|++|++--..|.|++++..++.......        .-......|+|||+   ..+|.....      
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            4567899999999888776557999999887765433221        12345778999994   344444221      


Q ss_pred             -C----C--cEEEEECCCCcE-----EEEee----CCCCCeEEEEEecCCCEEEEEeC
Q psy14440        565 -D----R--TIRLWDCVTGSH-----VRLLT----GHKAPVYALSFSVCGRFLASAGG  606 (711)
Q Consensus       565 -D----g--~I~iwD~~~~~~-----v~~~~----~h~~~I~~la~spdg~~Lasgs~  606 (711)
                       +    +  .|+.+.......     ...+.    ........|+|.+||.+.++.++
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence             1    1  133333322210     11111    12234578999999987776654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.75  E-value=9.6  Score=37.01  Aligned_cols=135  Identities=13%  Similarity=0.159  Sum_probs=78.9

Q ss_pred             cCCCC-EEEEEe---CCCeEEEEECCC--CeEE--EEEec-CCCCEEEEEEcCCCCEEEEEEC---------------CC
Q psy14440        469 SPDRS-LLLSCS---QDNTIRLWSLLL--WRCL--VVYKG-HGHPVWDIKFSPHGYYFASAGH---------------DR  524 (711)
Q Consensus       469 spdg~-~L~s~s---~Dg~V~iwdl~t--~~~~--~~~~~-h~~~V~~v~~sp~g~~l~sgs~---------------Dg  524 (711)
                      ..+|+ +|++..   ...+|.+|++..  ++..  .++.. ......++++..+|.+++|-..               -+
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence            34555 344443   356788888743  2222  22222 2345789999888887777421               12


Q ss_pred             eEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEE--eeCCCCCeEEEEEec-CCCE
Q psy14440        525 MARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS-SDRTIRLWDCVTGSHVRL--LTGHKAPVYALSFSV-CGRF  600 (711)
Q Consensus       525 ~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs-~Dg~I~iwD~~~~~~v~~--~~~h~~~I~~la~sp-dg~~  600 (711)
                      +..+|..+.+.. +........-+.|++++++++|+++. ..+.|++|++........  +..-.+....+.+.+ +|.+
T Consensus       187 ~g~v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~l  265 (340)
T d1v04a_         187 WSFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL  265 (340)
T ss_dssp             CEEEEEECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred             ceeEEEEcCCce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEE
Confidence            344554444433 33334456689999999998877665 577899999875432222  112345567788876 4555


Q ss_pred             EEEE
Q psy14440        601 LASA  604 (711)
Q Consensus       601 Lasg  604 (711)
                      .+++
T Consensus       266 wva~  269 (340)
T d1v04a_         266 WVGC  269 (340)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.58  E-value=3.8  Score=38.07  Aligned_cols=105  Identities=16%  Similarity=0.120  Sum_probs=52.2

Q ss_pred             CCEEEEEECC-----CeEEEEECCCCceeEEeec-CCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCCCcEEEEe
Q psy14440        514 GYYFASAGHD-----RMARLWATDSYHPLRLFVG-HYSDVDCVQFHPNSNYVATGSSD-----RTIRLWDCVTGSHVRLL  582 (711)
Q Consensus       514 g~~l~sgs~D-----g~i~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~latgs~D-----g~I~iwD~~~~~~v~~~  582 (711)
                      +..++.|+.+     ..+..||..+.+-...-.. ......+++.. ++..++.|+.+     ..+.++|..+.+....-
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~  227 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  227 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             ecceEecCcccccccceEEEeeccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeeccc
Confidence            4455555543     4567777765432221111 11112233333 34555555443     35677887776544322


Q ss_pred             eCCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCCCe
Q psy14440        583 TGHKAPVYALSFSVCGRFLASAGGDG-----NVHMWDLSNGH  619 (711)
Q Consensus       583 ~~h~~~I~~la~spdg~~Lasgs~Dg-----~I~iwDl~sg~  619 (711)
                      ........+.+..-++++++.|+.++     .|.+||+.+.+
T Consensus       228 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         228 PMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            21111111122233688888887654     37889988754

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=85.50  E-value=2.3  Score=40.11  Aligned_cols=184  Identities=15%  Similarity=0.027  Sum_probs=83.5

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceeEEe
Q psy14440        461 GPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF  540 (711)
Q Consensus       461 ~~V~~l~fspdg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g~~l~sgs~Dg~i~lwd~~~~~~~~~~  540 (711)
                      ..|..|+-.  ..+.+.-. ||.|..|-....-.+-.-......|..|... ..+.++ - .|+.+..|.....-.+...
T Consensus        26 ~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G-~~~~~a-l-~dg~v~~wG~~~~gq~~~~   99 (273)
T d1jtdb_          26 SGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG-NYHSLA-L-KDGEVIAWGGNEDGQTTVP   99 (273)
T ss_dssp             SSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC-SSEEEE-E-ETTEEEEEECCTTSTTCCC
T ss_pred             CCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecC-CCceee-e-eeeeeeccCCCcceeeccc
Confidence            346666652  22333334 7888888654322111111122344445432 222333 2 4899999976543222111


Q ss_pred             ecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q psy14440        541 VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNGHL  620 (711)
Q Consensus       541 ~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~Lasgs~Dg~I~iwDl~sg~~  620 (711)
                      ......+..++...  ...+. ..|+.+..|.-...............|..++-.  ...++ ...++.++.|-......
T Consensus       100 ~~~~~~~~~i~~~~--~~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~-~~~~g~~~~~G~~~~g~  173 (273)
T d1jtdb_         100 AEARSGVDAIAAGA--WASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTAL-AVKNGGVIAWGDNYFGQ  173 (273)
T ss_dssp             GGGGSSCCEEEEET--TEEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE-EEETTEEEEEECCTTST
T ss_pred             cccccceeEEeeec--ccccc-cccccceecccCCCCceeeeccCCceEEEEecc--ceeee-eecccceeEeecccCCc
Confidence            11223344554432  22222 248889888744322111111122344444432  22232 33467888886543211


Q ss_pred             EEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy14440        621 LTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFAK  659 (711)
Q Consensus       621 i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~~  659 (711)
                      ...-......|..|+...  .+.+.-. ||.|+-|=...
T Consensus       174 ~~~~~~~~~~v~~Is~G~--~h~~~l~-dG~v~~WG~n~  209 (273)
T d1jtdb_         174 TTVPAEAQSGVDDVAGGI--FHSLALK-DGKVIAWGDNR  209 (273)
T ss_dssp             TSCCGGGSSSEEEEEECS--SEEEEEE-TTEEEEEECCT
T ss_pred             ccccccccCCccceeccc--eeeEEEe-cCcEEEcCCCC
Confidence            111112234577776542  2222223 78888885443

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.82  E-value=0.31  Score=36.78  Aligned_cols=28  Identities=21%  Similarity=0.284  Sum_probs=24.4

Q ss_pred             HHH-HHHHHHhhCCCchhHHHHHhhhccC
Q psy14440         91 TLI-TMLKLLRQYNLRGTEEQLKKEINVN  118 (711)
Q Consensus        91 ~~~-~v~~yl~k~g~~~~e~~l~~e~~~~  118 (711)
                      +|. ++++||...||.++-++|++|+.+.
T Consensus         9 eL~kaI~~Yl~~~~~~~~~~~l~~e~~l~   37 (76)
T d1uuja_           9 ELNRAIADYLRSNGYEEAYSVFKKEAELD   37 (76)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHCCcHHHHHHHHHHHCCC
Confidence            444 8999999999999999999998654

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=81.28  E-value=2.4  Score=39.91  Aligned_cols=127  Identities=17%  Similarity=0.135  Sum_probs=62.1

Q ss_pred             CCCeEEEEECCCCceeEEeecCCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeCCCCCeEEEEEecCCCEE
Q psy14440        522 HDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFL  601 (711)
Q Consensus       522 ~Dg~i~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~h~~~I~~la~spdg~~L  601 (711)
                      .|+.+..|.................|..++-  .... +....++.++.|-.........-......|..|+.... ..+
T Consensus       120 ~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~--~~~~-~~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~-h~~  195 (273)
T d1jtdb_         120 KDGKVIAWGDDSDGQTTVPAEAQSGVTALDG--GVYT-ALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF-HSL  195 (273)
T ss_dssp             ETTEEEEEECCTTSTTSCCGGGGSSEEEEEE--CSSE-EEEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSS-EEE
T ss_pred             ccccceecccCCCCceeeeccCCceEEEEec--ccee-eeeecccceeEeecccCCcccccccccCCccceeccce-eeE
Confidence            4889999975543222211122233444433  2223 33345788888865433222222223456777765432 223


Q ss_pred             EEEeCCCcEEEEECCC-CeEEEEeeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy14440        602 ASAGGDGNVHMWDLSN-GHLLTLLTGHTDVVRALCFSRDGNILASSGQDCSVKLWDFA  658 (711)
Q Consensus       602 asgs~Dg~I~iwDl~s-g~~i~~l~~h~~~V~sl~fspdg~~Lasgs~Dg~V~iWdl~  658 (711)
                      +.  .||.|+-|=... |++- .-......|..|+-.. ...++.  .||.|..|=-.
T Consensus       196 ~l--~dG~v~~WG~n~~Gql~-~~~~~~~~v~~I~~G~-~~~~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         196 AL--KDGKVIAWGDNRYKQTT-VPTEALSGVSAIASGE-WYSLAL--KNGKVIAWGSS  247 (273)
T ss_dssp             EE--ETTEEEEEECCTTSTTC-CCGGGGSSCCEEEECS-SCEEEE--ETTEEEEESTT
T ss_pred             EE--ecCcEEEcCCCCCCccC-CCccCCCCcEEEEeCc-ceEEEE--ECCEEEEECCC
Confidence            32  378999995422 2211 1111123466666442 233443  38999999543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=80.11  E-value=21  Score=32.18  Aligned_cols=185  Identities=11%  Similarity=0.067  Sum_probs=92.5

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCEEEEEEcCCC-CEEEEE------ECCCeEEEEECCCCceeEEeecC
Q psy14440        471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG-YYFASA------GHDRMARLWATDSYHPLRLFVGH  543 (711)
Q Consensus       471 dg~~L~s~s~Dg~V~iwdl~t~~~~~~~~~h~~~V~~v~~sp~g-~~l~sg------s~Dg~i~lwd~~~~~~~~~~~~h  543 (711)
                      +.+.|+.+...|.+.++-+..++.++..+   .+|....--..+ .++..+      -.-+.+.+.++...-....+...
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp  101 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV  101 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence            33467777788999988887766554332   333222111111 122111      11223444444321111122222


Q ss_pred             C-CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEeeC---------CCCCeEEEEE-ecCCCEEEEEeC-CCcEE
Q psy14440        544 Y-SDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTG---------HKAPVYALSF-SVCGRFLASAGG-DGNVH  611 (711)
Q Consensus       544 ~-~~V~~v~~sp~~~~latgs~Dg~I~iwD~~~~~~v~~~~~---------h~~~I~~la~-spdg~~Lasgs~-Dg~I~  611 (711)
                      . -.|.+++.. +.+.+++|++...+.+|-+..|+......-         ...-|..+.+ .++.+-++++.- .|.++
T Consensus       102 k~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lr  180 (313)
T d2hu7a1         102 KPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  180 (313)
T ss_dssp             CSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEE
T ss_pred             ceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEE
Confidence            2 345555554 556777888877777887776654322110         1122233322 222233444444 56666


Q ss_pred             EEECCCCeEEE----------------------EeeC------------------CCCCEEEEEEeCCCCEEEEEeCCCc
Q psy14440        612 MWDLSNGHLLT----------------------LLTG------------------HTDVVRALCFSRDGNILASSGQDCS  651 (711)
Q Consensus       612 iwDl~sg~~i~----------------------~l~~------------------h~~~V~sl~fspdg~~Lasgs~Dg~  651 (711)
                      |++-..|..-.                      ++.-                  ..-.|+-+-+.|++++++.+-.||.
T Consensus       181 i~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~  260 (313)
T d2hu7a1         181 VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR  260 (313)
T ss_dssp             EECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTE
T ss_pred             EecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCc
Confidence            66644432111                      0100                  0123556678999999899999999


Q ss_pred             EEEEeCCC
Q psy14440        652 VKLWDFAK  659 (711)
Q Consensus       652 V~iWdl~~  659 (711)
                      -++|.=.+
T Consensus       261 s~lF~nGk  268 (313)
T d2hu7a1         261 SAVFIDGE  268 (313)
T ss_dssp             EEEEETTE
T ss_pred             hheeecce
Confidence            99997543