Psyllid ID: psy14458

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMRP
Secondary Structure (PSIPRED)
cEEccccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccccc
Coil and Loop (DISEMBL)
mvsghedsscvlydirgsrplqtfkphtadvrsihldhytteagtrqgspvsalcvdpsgrlmvsghedsscvlydirgsrplqtfkphtadvrsirfspsayylltggydnklVLTDLQGTMRP
Flexible Loop (DISEMBL)
mvsghedsscvlydirgsrplqtfkphtadVRSIHLDHYTteagtrqgspvSALCVDPSGRLMVSGHEDSSCVLYDIRgsrplqtfkphtadvrsirFSPSAYYLLTGGYDNKLVLTDLQGTMRP
Low Complexity Region (SEG)
MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMRP
Disordered region (IsUnstruct)
*********CVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTE********VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL******
Disordered Region (DISOPRED)
MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM**
Disordered Region (DISEMBL)
********SCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT********PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMRP
Disordered Region (DISPRO)
****HEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMRP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q8CGF6	920	WD repeat-containing prot	yes	N/A	0.656	0.089	0.619	3e-24
O94967	919	WD repeat-containing prot	yes	N/A	0.656	0.089	0.619	4e-24
Q6PH57	340	Guanine nucleotide-bindin	no	N/A	0.808	0.297	0.322	6e-10
P54313	340	Guanine nucleotide-bindin	no	N/A	0.8	0.294	0.308	6e-10
P62880	340	Guanine nucleotide-bindin	no	N/A	0.8	0.294	0.308	6e-10
P62879	340	Guanine nucleotide-bindin	no	N/A	0.8	0.294	0.308	6e-10
P11017	340	Guanine nucleotide-bindin	no	N/A	0.8	0.294	0.308	6e-10
Q9HAV0	340	Guanine nucleotide-bindin	no	N/A	0.808	0.297	0.305	1e-09
Q20636	356	Guanine nucleotide-bindin	no	N/A	0.824	0.289	0.272	1e-09
Q5GIS3	341	Guanine nucleotide-bindin	N/A	N/A	0.808	0.296	0.314	2e-09

>sp|Q8CGF6|WDR47_MOUSE WD repeat-containing protein 47 OS=Mus musculus GN=Wdr47 PE=1 SV=2

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 68/84 (80%), Gaps = 2/84 (2%)

Query: 40  TTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS 99
           TT  GT  GS V+++ VDPSGRL+ +G EDSSC+LYDIRG R +Q++ PH++DVRS+RFS
Sbjct: 795 TTFHGT--GSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFS 852

Query: 100 PSAYYLLTGGYDNKLVLTDLQGTM 123
           P A+YLLTG YD K+ +TDLQG +
Sbjct: 853 PGAHYLLTGSYDMKIKVTDLQGDL 876

Mus musculus (taxid: 10090)

>sp|O94967|WDR47_HUMAN WD repeat-containing protein 47 OS=Homo sapiens GN=WDR47 PE=1 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 68/84 (80%), Gaps = 2/84 (2%)

Query: 40  TTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS 99
           TT  GT  GS V+++ VDPSGRL+ +G EDSSC+LYDIRG R +Q++ PH++DVRS+RFS
Sbjct: 794 TTFHGT--GSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFS 851

Query: 100 PSAYYLLTGGYDNKLVLTDLQGTM 123
           P A+YLLTG YD K+ +TDLQG +
Sbjct: 852 PGAHYLLTGSYDMKIKVTDLQGDL 875

Homo sapiens (taxid: 9606)

>sp|Q6PH57|GBB1_DANRE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Danio rerio GN=gnb1 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           +V+   D++C L+DI   +   TF  HT DV S+ L                     P  
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFAGHTGDVMSLSLA--------------------PDT 196

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           RL VSG  D+S  L+D+R     QTF  H +D+ +I F P+     TG  D    L DL+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

Query: 121 G 121
            
Sbjct: 257 A 257

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Danio rerio (taxid: 7955)

>sp|P54313|GBB2_RAT Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Rattus norvegicus GN=Gnb2 PE=1 SV=4

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 20/120 (16%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           +++   D++C L+DI   +    F  H+ DV S+ L                     P G
Sbjct: 157 IITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLA--------------------PDG 196

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           R  VSG  D+S  L+D+R S   QTF  H +D+ ++ F P+ Y   TG  D    L DL+
Sbjct: 197 RTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLR 256

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Rattus norvegicus (taxid: 10116)

>sp|P62880|GBB2_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Mus musculus GN=Gnb2 PE=1 SV=3

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 20/120 (16%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           +++   D++C L+DI   +    F  H+ DV S+ L                     P G
Sbjct: 157 IITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLA--------------------PDG 196

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           R  VSG  D+S  L+D+R S   QTF  H +D+ ++ F P+ Y   TG  D    L DL+
Sbjct: 197 RTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLR 256

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Mus musculus (taxid: 10090)

>sp|P62879|GBB2_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Homo sapiens GN=GNB2 PE=1 SV=3

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 20/120 (16%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           +++   D++C L+DI   +    F  H+ DV S+ L                     P G
Sbjct: 157 IITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLA--------------------PDG 196

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           R  VSG  D+S  L+D+R S   QTF  H +D+ ++ F P+ Y   TG  D    L DL+
Sbjct: 197 RTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLR 256

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Homo sapiens (taxid: 9606)

>sp|P11017|GBB2_BOVIN Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Bos taurus GN=GNB2 PE=2 SV=3

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 20/120 (16%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           +++   D++C L+DI   +    F  H+ DV S+ L                     P G
Sbjct: 157 IITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLA--------------------PDG 196

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           R  VSG  D+S  L+D+R S   QTF  H +D+ ++ F P+ Y   TG  D    L DL+
Sbjct: 197 RTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLR 256

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Bos taurus (taxid: 9913)

>sp|Q9HAV0|GBB4_HUMAN Guanine nucleotide-binding protein subunit beta-4 OS=Homo sapiens GN=GNB4 PE=1 SV=3

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           +V+   D++C L+DI  ++   TF  H+ DV S+ L                     P  
Sbjct: 157 IVTSSGDTTCALWDIETAQQTTTFTGHSGDVMSLSLS--------------------PDM 196

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           R  VSG  D+S  L+DIR     Q+F  H +D+ ++ F P+ Y   TG  D    L DL+
Sbjct: 197 RTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNGYAFATGSDDATCRLFDLR 256

Query: 121 G 121
            
Sbjct: 257 A 257

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Homo sapiens (taxid: 9606)

>sp|Q20636|GBB2_CAEEL Guanine nucleotide-binding protein subunit beta-2 OS=Caenorhabditis elegans GN=gpb-2 PE=1 SV=2

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 18/121 (14%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           +++G  DS+C ++D+   + +Q F  HT DV +I +    T                  G
Sbjct: 171 ILTGSGDSTCAIWDVESGQLIQNFHGHTGDVFAIDVPKCDT------------------G 212

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
              +S   D   +++DIR  + +Q+F+ H AD+ ++RF P+     TG  D    L DL+
Sbjct: 213 NTFISAGADKHSLVWDIRSGQCVQSFEGHEADINTVRFHPNGDAFATGSDDATCRLFDLR 272

Query: 121 G 121
            
Sbjct: 273 A 273

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Caenorhabditis elegans (taxid: 6239)

>sp|Q5GIS3|GBB_PINFU Guanine nucleotide-binding protein subunit beta OS=Pinctada fucata PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 20/121 (16%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           +V+   D SC L+DI   +    F  HT DV S+ L                     P  
Sbjct: 158 IVTSSGDMSCALWDIETGQQTTAFTGHTGDVMSLSLS--------------------PDM 197

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           R  VSG  D+S  L+DIR     QTF  H +D+ +I + P+ Y   TG  D    L D++
Sbjct: 198 RTFVSGACDASAKLWDIRDGMCKQTFSGHESDINAITYFPNGYAFATGSDDATCRLFDIR 257

Query: 121 G 121
            
Sbjct: 258 A 258

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Pinctada fucata (taxid: 50426)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
58388279	346	AGAP006113-PA [Anopheles gambiae str. PE	0.88	0.317	0.617	4e-36
170040872	296	conserved hypothetical protein [Culex qu	0.88	0.371	0.626	6e-36
328704358	903	PREDICTED: WD repeat-containing protein	0.88	0.121	0.609	1e-35
157116820	345	hypothetical protein AaeL_AAEL001283 [Ae	0.88	0.318	0.617	1e-35
350406409	955	PREDICTED: WD repeat-containing protein	0.88	0.115	0.609	6e-35
340716254	955	PREDICTED: WD repeat-containing protein	0.88	0.115	0.609	6e-35
380013168	956	PREDICTED: LOW QUALITY PROTEIN: WD repea	0.88	0.115	0.609	6e-35
383858427	955	PREDICTED: WD repeat-containing protein	0.88	0.115	0.609	6e-35
328776065	955	PREDICTED: WD repeat-containing protein	0.88	0.115	0.609	7e-35
345495969	282	PREDICTED: WD repeat-containing protein	0.88	0.390	0.617	8e-35

>gi|58388279|ref|XP_316173.2| AGAP006113-PA [Anopheles gambiae str. PEST] gi|55238925|gb|EAA11621.2| AGAP006113-PA [Anopheles gambiae str. PEST]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 90/123 (73%), Gaps = 13/123 (10%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
            VSG +D +   +D+R    +    P              T  G+RQGSPV+A+CVDPSG
Sbjct: 192 FVSGSQDKTVRFWDLRTRGCVNMVTP-------------ATSPGSRQGSPVAAVCVDPSG 238

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           RL+VSGHEDSSCVLYDIRG+RP+Q FKPH++DVRSIRFSPSAYYLLT GYDNKLVLTDLQ
Sbjct: 239 RLLVSGHEDSSCVLYDIRGNRPIQCFKPHSSDVRSIRFSPSAYYLLTAGYDNKLVLTDLQ 298

Query: 121 GTM 123
           G +
Sbjct: 299 GDL 301

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170040872|ref|XP_001848207.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167864489|gb|EDS27872.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 77/123 (62%), Positives = 88/123 (71%), Gaps = 13/123 (10%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
            VSG  D S   +D+R    +    P              T  G+RQGSPV+A+CVDPSG
Sbjct: 142 FVSGSMDKSVRFWDLRTRGCVNMVTP-------------ATSPGSRQGSPVAAVCVDPSG 188

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           RL+VSGHEDSSCVLYDIRG+RP+Q FKPH +DVRSIRFSPSAYYLLT GYDNKLVLTDLQ
Sbjct: 189 RLLVSGHEDSSCVLYDIRGNRPIQCFKPHASDVRSIRFSPSAYYLLTAGYDNKLVLTDLQ 248

Query: 121 GTM 123
           G +
Sbjct: 249 GDL 251

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328704358|ref|XP_001949932.2| PREDICTED: WD repeat-containing protein 47-like [Acyrthosiphon pisum]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 90/123 (73%), Gaps = 13/123 (10%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
            VSG  D +   +D+R    +    P+T+               +RQGSPV+A+CV+PSG
Sbjct: 748 FVSGSHDRTIRFWDLRTRGCVNVVTPNTS-------------MASRQGSPVAAVCVEPSG 794

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           RL+VSGHEDS+CVLYDIRGSR LQ FKPH+ADVRS+RFSPSAYYLLTGGYDNKLVLTDLQ
Sbjct: 795 RLLVSGHEDSACVLYDIRGSRSLQCFKPHSADVRSLRFSPSAYYLLTGGYDNKLVLTDLQ 854

Query: 121 GTM 123
           G +
Sbjct: 855 GDL 857

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157116820|ref|XP_001652859.1| hypothetical protein AaeL_AAEL001283 [Aedes aegypti] gi|108883387|gb|EAT47612.1| AAEL001283-PA, partial [Aedes aegypti]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 88/123 (71%), Gaps = 13/123 (10%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
            VSG  D +   +D+R    +    P              T  G+RQGSPV+A+CVDPSG
Sbjct: 191 FVSGSMDKTVRFWDLRTRGCVNMVTP-------------ATSPGSRQGSPVAAVCVDPSG 237

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           RL+VSGHEDSSCVLYDIRG+RP+Q FKPH +DVRSIRFSPSAYYLLT GYDNKLVLTDLQ
Sbjct: 238 RLLVSGHEDSSCVLYDIRGNRPIQCFKPHASDVRSIRFSPSAYYLLTAGYDNKLVLTDLQ 297

Query: 121 GTM 123
           G +
Sbjct: 298 GDL 300

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406409|ref|XP_003487763.1| PREDICTED: WD repeat-containing protein 47-like [Bombus impatiens]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 87/123 (70%), Gaps = 13/123 (10%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
            VSG +D +   +D+R    +    P T               G+R GSPV+ALCVDPSG
Sbjct: 801 FVSGSQDKTVRFWDLRTRGCVNMVTPATV-------------PGSRVGSPVAALCVDPSG 847

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           RL+VSGHEDSSCVL+DIRG R +Q FKPH AD+RSIRFSPSAYYLLTGGYDNKLVLTDLQ
Sbjct: 848 RLLVSGHEDSSCVLFDIRGGRTVQCFKPHAADIRSIRFSPSAYYLLTGGYDNKLVLTDLQ 907

Query: 121 GTM 123
           G +
Sbjct: 908 GDL 910

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716254|ref|XP_003396614.1| PREDICTED: WD repeat-containing protein 47-like [Bombus terrestris]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 87/123 (70%), Gaps = 13/123 (10%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
            VSG +D +   +D+R    +    P T               G+R GSPV+ALCVDPSG
Sbjct: 801 FVSGSQDKTVRFWDLRTRGCVNMVTPATV-------------PGSRVGSPVAALCVDPSG 847

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           RL+VSGHEDSSCVL+DIRG R +Q FKPH AD+RSIRFSPSAYYLLTGGYDNKLVLTDLQ
Sbjct: 848 RLLVSGHEDSSCVLFDIRGGRTVQCFKPHAADIRSIRFSPSAYYLLTGGYDNKLVLTDLQ 907

Query: 121 GTM 123
           G +
Sbjct: 908 GDL 910

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013168|ref|XP_003690639.1| PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 47-like [Apis florea]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 87/123 (70%), Gaps = 13/123 (10%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
            VSG +D +   +D+R    +    P T               G+R GSPV+ALCVDPSG
Sbjct: 802 FVSGSQDKTVRFWDLRTRGCVNMVTPATV-------------PGSRVGSPVAALCVDPSG 848

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           RL+VSGHEDSSCVL+DIRG R +Q FKPH AD+RSIRFSPSAYYLLTGGYDNKLVLTDLQ
Sbjct: 849 RLLVSGHEDSSCVLFDIRGGRTVQCFKPHAADIRSIRFSPSAYYLLTGGYDNKLVLTDLQ 908

Query: 121 GTM 123
           G +
Sbjct: 909 GDL 911

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858427|ref|XP_003704703.1| PREDICTED: WD repeat-containing protein 47-like [Megachile rotundata]

 Score =  150 bits (380), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 87/123 (70%), Gaps = 13/123 (10%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
            VSG +D +   +D+R    +    P T               G+R GSPV+ALCVDPSG
Sbjct: 801 FVSGSQDKTVRFWDLRTRGCVNMVTPATV-------------PGSRVGSPVAALCVDPSG 847

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           RL+VSGHEDSSCVL+DIRG R +Q FKPH AD+RSIRFSPSAYYLLTGGYDNKLVLTDLQ
Sbjct: 848 RLLVSGHEDSSCVLFDIRGGRTVQCFKPHAADIRSIRFSPSAYYLLTGGYDNKLVLTDLQ 907

Query: 121 GTM 123
           G +
Sbjct: 908 GDL 910

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776065|ref|XP_394247.4| PREDICTED: WD repeat-containing protein 47-like [Apis mellifera]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 87/123 (70%), Gaps = 13/123 (10%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
            VSG +D +   +D+R    +    P T               G+R GSPV+ALCVDPSG
Sbjct: 801 FVSGSQDKTVRFWDLRTRGCVNMVTPATV-------------PGSRVGSPVAALCVDPSG 847

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           RL+VSGHEDSSCVL+DIRG R +Q FKPH AD+RSIRFSPSAYYLLTGGYDNKLVLTDLQ
Sbjct: 848 RLLVSGHEDSSCVLFDIRGGRTVQCFKPHAADIRSIRFSPSAYYLLTGGYDNKLVLTDLQ 907

Query: 121 GTM 123
           G +
Sbjct: 908 GDL 910

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495969|ref|XP_001601614.2| PREDICTED: WD repeat-containing protein 47-like, partial [Nasonia vitripennis]

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 87/123 (70%), Gaps = 13/123 (10%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
            VSG +D +   +D+R    +    P T               G+R GSPV+ALCVDPSG
Sbjct: 128 FVSGSQDKTVRFWDLRTRGCVNMHTPATV-------------PGSRVGSPVAALCVDPSG 174

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           RL+VSGHEDSSCVLYDIRG R +Q FKPH AD+RSIRFSPSAYYLLTGGYDNKLVLTDLQ
Sbjct: 175 RLLVSGHEDSSCVLYDIRGGRTVQCFKPHAADIRSIRFSPSAYYLLTGGYDNKLVLTDLQ 234

Query: 121 GTM 123
           G +
Sbjct: 235 GDL 237

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
FB|FBgn0034931	348	CG2812 [Drosophila melanogaste	0.872	0.313	0.508	9.4e-27
UNIPROTKB|O94967	919	WDR47 "WD repeat-containing pr	0.656	0.089	0.619	6.8e-23
MGI|MGI:2139593	920	Wdr47 "WD repeat domain 47" [M	0.656	0.089	0.619	6.8e-23
WB|WBGene00019434	942	nmtn-1 [Caenorhabditis elegans	0.632	0.083	0.544	2.1e-20
UNIPROTKB|B3KVK2	240	GNB1 "cDNA FLJ16663 fis, clone	0.64	0.333	0.362	5.7e-06
UNIPROTKB|P62871	340	GNB1 "Guanine nucleotide-bindi	0.64	0.235	0.362	1.2e-05
UNIPROTKB|P62872	340	GNB1 "Guanine nucleotide-bindi	0.64	0.235	0.362	1.2e-05
UNIPROTKB|P62873	340	GNB1 "Guanine nucleotide-bindi	0.64	0.235	0.362	1.2e-05
MGI|MGI:95781	340	Gnb1 "guanine nucleotide bindi	0.64	0.235	0.362	1.2e-05
RGD|2718	340	Gnb1 "guanine nucleotide bindi	0.64	0.235	0.362	1.2e-05

FB|FBgn0034931 CG2812 [Drosophila melanogaster (taxid:7227)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 62/122 (50%), Positives = 83/122 (68%)

Query:     2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGR 61
             VSG +D +   +D+R +  + T            LD+   + G  + S V+A+CVDP+GR
Sbjct:   195 VSGSQDQTIRFWDLRVNVSVNT------------LDNDRKDGGL-ESSAVTAVCVDPTGR 241

Query:    62 LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG 121
             L+VSGH DSSC LYDIRG+RP+Q F PHTA++R +RFSPSAYY+LT  YDN + LTDLQG
Sbjct:   242 LLVSGHADSSCTLYDIRGNRPIQRFYPHTAEIRCVRFSPSAYYMLTCSYDNSIRLTDLQG 301

Query:   122 TM 123
              +
Sbjct:   302 DL 303

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|O94967 WDR47 "WD repeat-containing protein 47" [Homo sapiens (taxid:9606)]

 Score = 276 (102.2 bits), Expect = 6.8e-23, P = 6.8e-23
 Identities = 52/84 (61%), Positives = 68/84 (80%)

Query:    40 TTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS 99
             TT  GT  GS V+++ VDPSGRL+ +G EDSSC+LYDIRG R +Q++ PH++DVRS+RFS
Sbjct:   794 TTFHGT--GSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFS 851

Query:   100 PSAYYLLTGGYDNKLVLTDLQGTM 123
             P A+YLLTG YD K+ +TDLQG +
Sbjct:   852 PGAHYLLTGSYDMKIKVTDLQGDL 875

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

MGI|MGI:2139593 Wdr47 "WD repeat domain 47" [Mus musculus (taxid:10090)]

 Score = 276 (102.2 bits), Expect = 6.8e-23, P = 6.8e-23
 Identities = 52/84 (61%), Positives = 68/84 (80%)

Query:    40 TTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS 99
             TT  GT  GS V+++ VDPSGRL+ +G EDSSC+LYDIRG R +Q++ PH++DVRS+RFS
Sbjct:   795 TTFHGT--GSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFS 852

Query:   100 PSAYYLLTGGYDNKLVLTDLQGTM 123
             P A+YLLTG YD K+ +TDLQG +
Sbjct:   853 PGAHYLLTGSYDMKIKVTDLQGDL 876

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008150 "biological_process" evidence=ND

WB|WBGene00019434 nmtn-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 253 (94.1 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 43/79 (54%), Positives = 65/79 (82%)

Query:    45 TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYY 104
             +   SPV+++CVDP+G+L+VSGHED+S  L+DI G+R LQTF+PH  +VR++RFS +AYY
Sbjct:   819 SHNASPVTSVCVDPNGKLLVSGHEDASVALFDIGGNRILQTFRPHGDEVRTVRFSNAAYY 878

Query:   105 LLTGGYDNKLVLTDLQGTM 123
             LLT  YD ++V++D++G +
Sbjct:   879 LLTASYDKRVVISDMRGDL 897

GO:0040002 "collagen and cuticulin-based cuticle development" evidence=IMP

UNIPROTKB|B3KVK2 GNB1 "cDNA FLJ16663 fis, clone THYMU2005759, highly similar to Guanine nucleotide-binding proteinG(I)/G(S)/G(T) subunit beta 1" [Homo sapiens (taxid:9606)]

 Score = 109 (43.4 bits), Expect = 5.7e-06, P = 5.7e-06
 Identities = 29/80 (36%), Positives = 39/80 (48%)

Query:    41 TEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP 100
             T   T     V +L + P  RL VSG  D+S  L+D+R     QTF  H +D+ +I F P
Sbjct:    77 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 136

Query:   101 SAYYLLTGGYDNKLVLTDLQ 120
             +     TG  D    L DL+
Sbjct:   137 NGNAFATGSDDATCRLFDLR 156

GO:0001917 "photoreceptor inner segment" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0010659 "cardiac muscle cell apoptotic process" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0042622 "photoreceptor outer segment membrane" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0050909 "sensory perception of taste" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0071456 "cellular response to hypoxia" evidence=IEA

UNIPROTKB|P62871 GNB1 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1" [Bos taurus (taxid:9913)]

 Score = 109 (43.4 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 29/80 (36%), Positives = 39/80 (48%)

Query:    41 TEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP 100
             T   T     V +L + P  RL VSG  D+S  L+D+R     QTF  H +D+ +I F P
Sbjct:   177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query:   101 SAYYLLTGGYDNKLVLTDLQ 120
             +     TG  D    L DL+
Sbjct:   237 NGNAFATGSDDATCRLFDLR 256

GO:0071380 "cellular response to prostaglandin E stimulus" evidence=IDA

GO:0071870 "cellular response to catecholamine stimulus" evidence=IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0051020 "GTPase binding" evidence=IEA

GO:0050909 "sensory perception of taste" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|P62872 GNB1 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1" [Canis lupus familiaris (taxid:9615)]

 Score = 109 (43.4 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 29/80 (36%), Positives = 39/80 (48%)

Query:    41 TEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP 100
             T   T     V +L + P  RL VSG  D+S  L+D+R     QTF  H +D+ +I F P
Sbjct:   177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query:   101 SAYYLLTGGYDNKLVLTDLQ 120
             +     TG  D    L DL+
Sbjct:   237 NGNAFATGSDDATCRLFDLR 256

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0051020 "GTPase binding" evidence=IEA

GO:0050909 "sensory perception of taste" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|P62873 GNB1 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1" [Homo sapiens (taxid:9606)]

 Score = 109 (43.4 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 29/80 (36%), Positives = 39/80 (48%)

Query:    41 TEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP 100
             T   T     V +L + P  RL VSG  D+S  L+D+R     QTF  H +D+ +I F P
Sbjct:   177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query:   101 SAYYLLTGGYDNKLVLTDLQ 120
             +     TG  D    L DL+
Sbjct:   237 NGNAFATGSDDATCRLFDLR 256

GO:0004871 "signal transducer activity" evidence=IEA

GO:0001917 "photoreceptor inner segment" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0010659 "cardiac muscle cell apoptotic process" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0042622 "photoreceptor outer segment membrane" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0050909 "sensory perception of taste" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0071456 "cellular response to hypoxia" evidence=IEA

GO:0051020 "GTPase binding" evidence=IPI

GO:0007165 "signal transduction" evidence=TAS

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=TAS

GO:0007265 "Ras protein signal transduction" evidence=TAS

GO:0003924 "GTPase activity" evidence=IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=IDA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0071377 "cellular response to glucagon stimulus" evidence=TAS

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=ISS

GO:0071380 "cellular response to prostaglandin E stimulus" evidence=ISS

GO:0071870 "cellular response to catecholamine stimulus" evidence=ISS

GO:0005622 "intracellular" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=IDA;TAS

MGI|MGI:95781 Gnb1 "guanine nucleotide binding protein (G protein), beta 1" [Mus musculus (taxid:10090)]

 Score = 109 (43.4 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 29/80 (36%), Positives = 39/80 (48%)

Query:    41 TEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP 100
             T   T     V +L + P  RL VSG  D+S  L+D+R     QTF  H +D+ +I F P
Sbjct:   177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query:   101 SAYYLLTGGYDNKLVLTDLQ 120
             +     TG  D    L DL+
Sbjct:   237 NGNAFATGSDDATCRLFDLR 256

GO:0001664 "G-protein coupled receptor binding" evidence=ISO

GO:0001750 "photoreceptor outer segment" evidence=IDA

GO:0001917 "photoreceptor inner segment" evidence=ISO

GO:0003924 "GTPase activity" evidence=ISA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISO;ISA;IPI

GO:0006184 "GTP catabolic process" evidence=ISO;ISA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO;IDA;TAS

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IDA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=ISO

GO:0007603 "phototransduction, visible light" evidence=ISA

GO:0008283 "cell proliferation" evidence=IDA

GO:0010659 "cardiac muscle cell apoptotic process" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0031702 "type 1 angiotensin receptor binding" evidence=ISO

GO:0042622 "photoreceptor outer segment membrane" evidence=ISO

GO:0044297 "cell body" evidence=ISO

GO:0050909 "sensory perception of taste" evidence=IDA

GO:0051020 "GTPase binding" evidence=ISO

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0071456 "cellular response to hypoxia" evidence=ISO

RGD|2718 Gnb1 "guanine nucleotide binding protein (G protein), beta polypeptide 1" [Rattus norvegicus (taxid:10116)]

 Score = 109 (43.4 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 29/80 (36%), Positives = 39/80 (48%)

Query:    41 TEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP 100
             T   T     V +L + P  RL VSG  D+S  L+D+R     QTF  H +D+ +I F P
Sbjct:   177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query:   101 SAYYLLTGGYDNKLVLTDLQ 120
             +     TG  D    L DL+
Sbjct:   237 NGNAFATGSDDATCRLFDLR 256

GO:0001750 "photoreceptor outer segment" evidence=ISO

GO:0001917 "photoreceptor inner segment" evidence=IDA

GO:0003924 "GTPase activity" evidence=IEA;ISO

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISO;IDA;TAS

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO;IMP;TAS

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA;ISO

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IMP

GO:0008283 "cell proliferation" evidence=IEA;ISO

GO:0010659 "cardiac muscle cell apoptotic process" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042622 "photoreceptor outer segment membrane" evidence=IDA

GO:0044297 "cell body" evidence=IDA

GO:0050909 "sensory perception of taste" evidence=IEA;ISO

GO:0051020 "GTPase binding" evidence=IEA;ISO

GO:0060041 "retina development in camera-type eye" evidence=IEA;ISO

GO:0071456 "cellular response to hypoxia" evidence=IDA

GO:0001664 "G-protein coupled receptor binding" evidence=IMP

GO:0031702 "type 1 angiotensin receptor binding" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O94967	WDR47_HUMAN	No assigned EC number	0.6190	0.656	0.0892	yes	N/A
Q8CGF6	WDR47_MOUSE	No assigned EC number	0.6190	0.656	0.0891	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	125
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-07
smart00320	40	smart00320, WD40, WD40 repeats	3e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.1 bits (180), Expect = 1e-16
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 22/135 (16%)

Query: 2   VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHL-------------------DHYTTE 42
            S  +D +  L+D+R  + + T   HT +V S+                     D  T +
Sbjct: 151 ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210

Query: 43  A-GTRQG--SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS 99
             GT +G  + V+++   P G L+ SG ED +  ++D+R    +QT   HT  V S+ +S
Sbjct: 211 CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS 270

Query: 100 PSAYYLLTGGYDNKL 114
           P    L +G  D  +
Sbjct: 271 PDGKRLASGSADGTI 285

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.1 bits (180), Expect = 1e-16
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 20/112 (17%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           + SG  D +  L+D+     ++T   HT+ V S+                       P G
Sbjct: 66  LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS--------------------PDG 105

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
           R++ S   D +  ++D+   + L T + HT  V S+ FSP   ++ +   D 
Sbjct: 106 RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 71.2 bits (175), Expect = 7e-16
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 22/141 (15%)

Query: 2   VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI------------HLDHYTTEAGTRQGS 49
            S   D +  ++D+   + L T + HT  V S+              D        R G 
Sbjct: 109 SSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168

Query: 50  P----------VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS 99
                      V+++   P G  ++S   D +  L+D+   + L T + H   V S+ FS
Sbjct: 169 CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228

Query: 100 PSAYYLLTGGYDNKLVLTDLQ 120
           P  Y L +G  D  + + DL+
Sbjct: 229 PDGYLLASGSEDGTIRVWDLR 249

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 20/120 (16%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           + +G  D +  ++D+     L+T K HT  VR +                         G
Sbjct: 24  LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS--------------------ADG 63

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
             + SG  D +  L+D+     ++T   HT+ V S+ FSP    L +   D  + + D++
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 59.7 bits (143), Expect = 1e-11
 Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 24/144 (16%)

Query: 2   VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIH-----------------LDHYTTEAG 44
                D +  L+D+R  +PL T   HT  V S+                  +  +    G
Sbjct: 172 SGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231

Query: 45  -----TRQGSPVSAL-CVDPSGRLMVSGHEDSSCVLYDIR-GSRPLQTFKPHTADVRSIR 97
                T  G   S +    P G L+ SG  D +  L+D+R  S  L+T   H++ V S+ 
Sbjct: 232 KLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVA 291

Query: 98  FSPSAYYLLTGGYDNKLVLTDLQG 121
           FSP    L +G  D  + L DL+ 
Sbjct: 292 FSPDGKLLASGSSDGTVRLWDLET 315

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 22/73 (30%), Positives = 36/73 (49%)

Query: 49  SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTG 108
             V+ +   P G+L+ +G  D +  ++D+     L+T K HT  VR +  S    YL +G
Sbjct: 10  GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASG 69

Query: 109 GYDNKLVLTDLQG 121
             D  + L DL+ 
Sbjct: 70  SSDKTIRLWDLET 82

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.9 bits (120), Expect = 2e-08
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 49  SPVSALCVDPSGRLMVSG-HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSA-YYLL 106
             V++L   P G+L+ SG   D +  L+D+R  +PL T   HT  V S+ FSP     + 
Sbjct: 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215

Query: 107 TGGYDNKLVLTDLQ 120
           +G  D  + L DL 
Sbjct: 216 SGSSDGTIRLWDLS 229

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 23/118 (19%)

Query: 1   MVSGHEDSSCVLYDIR-GSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS 59
           + SG  D +  L+D+R  S  L+T   H+                    S V ++   P 
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHS--------------------SSVLSVAFSPD 295

Query: 60  GRLMVSGHEDSSCVLYDIRGSRPLQ--TFKPHTADVRSIRFSPSAYYLLTGGYDNKLV 115
           G+L+ SG  D +  L+D+   + L   T K H   V S+ FSP    L++GG D+  +
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 24/145 (16%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQ--TFKPHTADVRSIH----------------------L 36
           + SG  D +  L+D+   + L   T K H   V S+                       L
Sbjct: 299 LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358

Query: 37  DHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI 96
                       S V ++   P GR++ SG  D +  L+D+     L+    HT+ V S+
Sbjct: 359 RTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSL 418

Query: 97  RFSPSAYYLLTGGYDNKLVLTDLQG 121
            FSP    L +G  DN + L DL+ 
Sbjct: 419 DFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 3e-06
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 81  RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD 118
             L+T K HT  V S+ FSP   YL +G  D  + L D
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.4 bits (95), Expect = 5e-06
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 81  RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVL 116
           + L+T K HT  V S+ FSP    L +G  D  + +
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRV 37

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 82  PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG 121
             +T K HT  V  + FSP    L TG  D  + + DL+ 
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLET 40

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
KOG0263|consensus	707		99.95
KOG0272|consensus	459		99.95
KOG0279|consensus	315		99.94
KOG0271|consensus	480		99.93
KOG0263|consensus	707		99.91
KOG0272|consensus	459		99.91
KOG0285|consensus	460		99.91
KOG0266|consensus	456		99.91
KOG0271|consensus	480		99.91
KOG0295|consensus	406		99.91
KOG0286|consensus	343		99.9
PTZ00421	493	coronin; Provisional	99.9
KOG0315|consensus	311		99.9
KOG0315|consensus	311		99.89
KOG0278|consensus	334		99.89
KOG0286|consensus	343		99.88
KOG0284|consensus	464		99.88
KOG0291|consensus	893		99.88
KOG0302|consensus	440		99.88
KOG0281|consensus	499		99.88
KOG0273|consensus	524		99.87
KOG0266|consensus	456		99.86
KOG0269|consensus	839		99.86
PTZ00420	568	coronin; Provisional	99.86
KOG0284|consensus	464		99.86
KOG0295|consensus	406		99.85
KOG0275|consensus	508		99.85
KOG0316|consensus	307		99.85
KOG0319|consensus	775		99.85
KOG0279|consensus	315		99.85
KOG0292|consensus	1202		99.84
KOG0276|consensus	794		99.84
KOG0645|consensus	312		99.84
KOG0313|consensus	423		99.84
KOG0305|consensus	484		99.84
KOG0319|consensus	775		99.84
KOG0273|consensus	524		99.83
KOG0276|consensus	794		99.83
PTZ00421	493	coronin; Provisional	99.83
KOG0277|consensus	311		99.83
KOG0264|consensus	422		99.83
KOG0289|consensus	506		99.83
KOG0274|consensus	537		99.83
KOG1407|consensus	313		99.82
KOG0318|consensus	603		99.82
KOG0282|consensus	503		99.81
KOG0316|consensus	307		99.81
KOG0772|consensus	641		99.81
KOG0305|consensus	484		99.81
KOG0264|consensus	422		99.81
KOG0281|consensus	499		99.81
KOG0267|consensus	825		99.81
KOG0643|consensus	327		99.8
PTZ00420	568	coronin; Provisional	99.8
PLN00181	793	protein SPA1-RELATED; Provisional	99.8
KOG0291|consensus	893		99.8
KOG0270|consensus	463		99.8
KOG1446|consensus	311		99.79
KOG0641|consensus	350		99.79
KOG0265|consensus	338		99.79
KOG0283|consensus	712		99.79
KOG0302|consensus	440		99.79
KOG0294|consensus	362		99.78
KOG0647|consensus	347		99.78
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.78
KOG0283|consensus	712		99.77
KOG0296|consensus	399		99.77
KOG0292|consensus	1202		99.77
KOG0277|consensus	311		99.77
KOG0640|consensus	430		99.77
KOG0640|consensus	430		99.76
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.76
KOG0303|consensus	472		99.76
PLN00181	793	protein SPA1-RELATED; Provisional	99.76
KOG0265|consensus	338		99.76
KOG0285|consensus	460		99.76
KOG0322|consensus	323		99.76
KOG0294|consensus	362		99.75
KOG0310|consensus	487		99.75
KOG0288|consensus	459		99.75
KOG0308|consensus	735		99.75
KOG0282|consensus	503		99.75
KOG0313|consensus	423		99.74
KOG0318|consensus	603		99.74
KOG1034|consensus	385		99.74
KOG0274|consensus	537		99.73
KOG0275|consensus	508		99.73
KOG1446|consensus	311		99.73
KOG0300|consensus	481		99.72
KOG1445|consensus	1012		99.72
KOG0310|consensus	487		99.71
KOG0296|consensus	399		99.71
KOG0645|consensus	312		99.71
KOG1036|consensus	323		99.71
KOG0293|consensus	519		99.7
KOG0639|consensus	705		99.7
KOG0268|consensus	433		99.69
KOG4283|consensus	397		99.69
KOG0300|consensus	481		99.68
KOG0289|consensus	506		99.68
KOG0267|consensus	825		99.68
KOG4283|consensus	397		99.68
KOG0268|consensus	433		99.68
KOG1332|consensus	299		99.67
KOG0293|consensus	519		99.67
KOG2110|consensus	391		99.67
KOG1408|consensus	1080		99.66
KOG0306|consensus	888		99.66
KOG2111|consensus	346		99.66
KOG0306|consensus	888		99.66
KOG0308|consensus	735		99.66
KOG0269|consensus	839		99.66
KOG0973|consensus	942		99.66
KOG0772|consensus	641		99.66
KOG1407|consensus	313		99.64
KOG0646|consensus	476		99.63
KOG2096|consensus	420		99.63
KOG0646|consensus	476		99.63
KOG1273|consensus	405		99.63
KOG1332|consensus	299		99.63
KOG0301|consensus	745		99.63
KOG1539|consensus	910		99.62
KOG0973|consensus	942		99.62
KOG1274|consensus	933		99.62
KOG0649|consensus	325		99.61
KOG1539|consensus	910		99.61
KOG0299|consensus	479		99.61
KOG0288|consensus	459		99.61
KOG2048|consensus	691		99.6
KOG1036|consensus	323		99.6
KOG4378|consensus	673		99.6
KOG0301|consensus	745		99.6
KOG1274|consensus	933		99.6
KOG2394|consensus	636		99.6
KOG4328|consensus	498		99.59
KOG1273|consensus	405		99.59
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.58
KOG0647|consensus	347		99.58
KOG0643|consensus	327		99.58
KOG0299|consensus	479		99.58
KOG1007|consensus	370		99.57
KOG0278|consensus	334		99.57
KOG0270|consensus	463		99.56
KOG1009|consensus	434		99.56
KOG0303|consensus	472		99.56
KOG1188|consensus	376		99.55
KOG1445|consensus	1012		99.55
KOG1408|consensus	1080		99.55
KOG0290|consensus	364		99.55
KOG0642|consensus	577		99.54
KOG2394|consensus	636		99.54
KOG2445|consensus	361		99.53
KOG0321|consensus	720		99.53
KOG0641|consensus	350		99.53
KOG0307|consensus	1049		99.52
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.52
KOG0650|consensus	733		99.52
KOG0639|consensus	705		99.52
KOG1272|consensus	545		99.51
KOG2106|consensus	626		99.48
KOG1524|consensus	737		99.48
KOG0649|consensus	325		99.47
KOG0644|consensus	1113		99.47
KOG3881|consensus	412		99.45
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.43
KOG1063|consensus	764		99.43
KOG2919|consensus	406		99.43
KOG0307|consensus	1049		99.43
KOG2110|consensus	391		99.42
KOG1188|consensus	376		99.42
KOG0321|consensus	720		99.41
KOG0771|consensus	398		99.41
KOG2055|consensus	514		99.39
KOG1007|consensus	370		99.38
KOG2106|consensus	626		99.36
KOG1034|consensus	385		99.36
KOG2445|consensus	361		99.36
KOG2139|consensus	445		99.35
KOG1009|consensus	434		99.33
COG2319	466	FOG: WD40 repeat [General function prediction only	99.32
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.31
KOG1310|consensus	758		99.29
KOG2055|consensus	514		99.29
KOG0771|consensus	398		99.28
KOG2919|consensus	406		99.28
KOG1963|consensus	792		99.28
KOG4227|consensus	609		99.27
KOG3914|consensus	390		99.26
KOG1524|consensus	737		99.26
COG2319	466	FOG: WD40 repeat [General function prediction only	99.26
KOG2096|consensus	420		99.25
KOG0280|consensus	339		99.23
KOG1310|consensus	758		99.22
KOG2048|consensus	691		99.22
KOG0642|consensus	577		99.22
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.22
KOG1587|consensus	555		99.2
KOG0290|consensus	364		99.19
KOG4328|consensus	498		99.19
KOG1063|consensus	764		99.18
KOG2321|consensus	703		99.17
KOG1272|consensus	545		99.17
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.14
KOG1523|consensus	361		99.14
KOG1517|consensus	1387		99.14
KOG0322|consensus	323		99.12
KOG0650|consensus	733		99.12
KOG4378|consensus	673		99.12
KOG1538|consensus	1081		99.11
KOG1523|consensus	361		99.11
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.1
KOG1240|consensus	1431		99.09
KOG3881|consensus	412		99.08
KOG1517|consensus	1387		99.06
KOG1587|consensus	555		99.06
KOG4547|consensus	541		99.02
KOG2315|consensus	566		99.01
KOG1538|consensus	1081		99.01
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	99.0
KOG1963|consensus	792		99.0
KOG4714|consensus	319		98.98
KOG0974|consensus	967		98.98
KOG4547|consensus	541		98.97
KOG4227|consensus	609		98.93
KOG2139|consensus	445		98.9
KOG2321|consensus	703		98.89
PRK01742	429	tolB translocation protein TolB; Provisional	98.86
KOG0644|consensus	1113		98.85
KOG0280|consensus	339		98.83
KOG1064|consensus	2439		98.83
PRK11028	330	6-phosphogluconolactonase; Provisional	98.8
PRK11028	330	6-phosphogluconolactonase; Provisional	98.79
KOG0974|consensus	967		98.77
KOG2111|consensus	346		98.75
KOG1240|consensus	1431		98.75
KOG4640|consensus	665		98.73
PRK01742	429	tolB translocation protein TolB; Provisional	98.71
COG4946	668	Uncharacterized protein related to the periplasmic	98.71
KOG1645|consensus	463		98.69
KOG4190|consensus	1034		98.69
PRK05137	435	tolB translocation protein TolB; Provisional	98.67
KOG2695|consensus	425		98.65
KOG4497|consensus	447		98.62
KOG1064|consensus	2439		98.61
PRK05137	435	tolB translocation protein TolB; Provisional	98.58
PRK04922	433	tolB translocation protein TolB; Provisional	98.57
PRK04922	433	tolB translocation protein TolB; Provisional	98.56
KOG2066|consensus	846		98.54
PRK02889	427	tolB translocation protein TolB; Provisional	98.54
PRK03629	429	tolB translocation protein TolB; Provisional	98.54
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.54
KOG1409|consensus	404		98.53
PRK03629	429	tolB translocation protein TolB; Provisional	98.53
KOG1334|consensus	559		98.51
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.5
KOG1409|consensus	404		98.5
KOG4532|consensus	344		98.46
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.39
PRK00178	430	tolB translocation protein TolB; Provisional	98.38
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.37
PRK02889	427	tolB translocation protein TolB; Provisional	98.36
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.34
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.34
KOG4714|consensus	319		98.27
KOG0309|consensus	1081		98.27
KOG2695|consensus	425		98.23
KOG4497|consensus	447		98.23
KOG1275|consensus	1118		98.23
KOG1912|consensus	1062		98.21
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.2
KOG1912|consensus	1062		98.19
PRK00178	430	tolB translocation protein TolB; Provisional	98.19
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.18
KOG3621|consensus	726		98.18
KOG4640|consensus	665		98.18
KOG2041|consensus	1189		98.17
KOG4190|consensus	1034		98.17
PRK01029	428	tolB translocation protein TolB; Provisional	98.13
KOG1354|consensus	433		98.13
PRK04792	448	tolB translocation protein TolB; Provisional	98.12
KOG4532|consensus	344		98.11
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.1
PRK01029	428	tolB translocation protein TolB; Provisional	98.09
PRK04792	448	tolB translocation protein TolB; Provisional	98.09
KOG1354|consensus	433		98.08
KOG1334|consensus	559		98.06
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.02
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.02
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	98.01
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.01
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.97
KOG4649|consensus	354		97.91
KOG1275|consensus	1118		97.89
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.88
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.87
KOG3914|consensus	390		97.83
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.79
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.79
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.79
KOG2444|consensus	238		97.78
PRK04043	419	tolB translocation protein TolB; Provisional	97.78
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.74
KOG1645|consensus	463		97.69
KOG2315|consensus	566		97.64
KOG0309|consensus	1081		97.62
KOG3617|consensus	1416		97.6
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.58
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.57
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.56
KOG2066|consensus	846		97.54
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.54
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	97.53
KOG2041|consensus	1189		97.53
KOG2079|consensus	1206		97.52
KOG1832|consensus	1516		97.51
KOG0882|consensus	558		97.5
PRK04043	419	tolB translocation protein TolB; Provisional	97.49
KOG2314|consensus	698		97.47
PRK02888	635	nitrous-oxide reductase; Validated	97.45
KOG4649|consensus	354		97.44
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.41
PRK02888	635	nitrous-oxide reductase; Validated	97.37
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.35
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.31
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.3
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.27
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.26
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.12
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.08
KOG2314|consensus	698		97.01
COG4946	668	Uncharacterized protein related to the periplasmic	97.0
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.0
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.99
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.97
KOG2114|consensus	933		96.93
KOG1832|consensus	1516		96.89
KOG2395|consensus	644		96.89
KOG2079|consensus	1206		96.87
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.78
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	96.78
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.77
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.7
KOG1008|consensus	783		96.61
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.59
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.51
KOG0882|consensus	558		96.47
KOG3621|consensus	726		96.47
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.42
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.37
KOG1920|consensus	1265		96.36
KOG1900|consensus	1311		96.3
KOG2114|consensus	933		96.24
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.19
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.09
KOG1008|consensus	783		96.09
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.03
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.0
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.89
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.73
KOG1920|consensus	1265		95.71
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.63
COG3391	381	Uncharacterized conserved protein [Function unknow	95.62
KOG4499|consensus	310		95.44
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.4
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.38
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.36
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.2
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.19
KOG2395|consensus	644		95.19
KOG4460|consensus	741		95.04
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.82
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	94.79
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.77
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.64
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.55
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.51
KOG3617|consensus	1416		94.47
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.16
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.16
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.11
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	94.06
KOG3630|consensus	1405		94.05
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.0
PRK13616	591	lipoprotein LpqB; Provisional	93.93
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	93.79
COG5167	776	VID27 Protein involved in vacuole import and degra	93.71
KOG2444|consensus	238		93.58
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	93.51
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.44
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.24
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	93.13
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.02
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.42
KOG3630|consensus	1405		92.27
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.1
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.09
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	92.0
KOG1916|consensus	1283		91.96
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	91.91
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	91.78
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.64
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.64
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	91.45
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	91.4
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.18
PRK10115	686	protease 2; Provisional	91.07
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.01
KOG2377|consensus	657		90.58
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	90.3
PRK13616	591	lipoprotein LpqB; Provisional	90.08
PHA02713	557	hypothetical protein; Provisional	89.88
KOG2247|consensus	615		89.86
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.73
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	89.39
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	88.83
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	88.82
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	88.41
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	88.16
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.86
COG4590	733	ABC-type uncharacterized transport system, permeas	87.77
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	87.34
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	87.15
PHA02713	557	hypothetical protein; Provisional	86.25
PF12768	281	Rax2: Cortical protein marker for cell polarity	85.51
KOG4441|consensus	571		85.34
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	85.02
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	84.92
COG1520	370	FOG: WD40-like repeat [Function unknown]	84.89
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	84.88
PHA03098	534	kelch-like protein; Provisional	84.7
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	84.36
COG3391	381	Uncharacterized conserved protein [Function unknow	84.17
KOG1916|consensus	1283		84.1
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	82.64
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	82.13
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	82.12
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	81.5
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	81.18
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	80.81
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	80.42

>KOG0263|consensus

Probab=99.95  E-value=4.2e-27  Score=156.18  Aligned_cols=123  Identities=24%  Similarity=0.373  Sum_probs=113.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc----------------------cCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG----------------------TRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------------~~~~~~i~~~~~~~   58 (125)
                      |+++++|+++|+|.+.+..++-.+++|..||..++|.+.....+                      ..|-.-+.|+.|+|
T Consensus       466 LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP  545 (707)
T KOG0263|consen  466 LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP  545 (707)
T ss_pred             eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC
Confidence            68999999999999999999999999999999999987544333                      25557899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.+++++|+.|.++++||+.++..++.|.+|+++|.+++|+|+|++|++|+.|+.|.+||+.++.
T Consensus       546 Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~  610 (707)
T KOG0263|consen  546 NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS  610 (707)
T ss_pred             cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999998864

>KOG0272|consensus

Probab=99.95  E-value=3.6e-27  Score=148.02  Aligned_cols=123  Identities=26%  Similarity=0.408  Sum_probs=113.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc----------------------cCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG----------------------TRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------------~~~~~~i~~~~~~~   58 (125)
                      |+||+.||++++|++.+..++..+.+|...|..+.|++......                      -.|...|.+++|.|
T Consensus       234 lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~  313 (459)
T KOG0272|consen  234 LATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP  313 (459)
T ss_pred             eeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC
Confidence            68999999999999999899999999999999999987543222                      27789999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +|.++++|+.|..-+|||++++.++-.+.+|.++|..+.|+|+|.++++|+.|++++|||++...
T Consensus       314 DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~  378 (459)
T KOG0272|consen  314 DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS  378 (459)
T ss_pred             CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc
Confidence            99999999999999999999999999999999999999999999999999999999999998653

>KOG0279|consensus

Probab=99.94  E-value=2.6e-25  Score=133.69  Aligned_cols=123  Identities=24%  Similarity=0.337  Sum_probs=109.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccccc-----------------------CCCCCeEEEEEC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGT-----------------------RQGSPVSALCVD   57 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------------~~~~~i~~~~~~   57 (125)
                      ++++++|+++++||+.+++..+.|.+|...|.++.++........                       .+...|+|+.|+
T Consensus        78 alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfs  157 (315)
T KOG0279|consen   78 ALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFS  157 (315)
T ss_pred             EEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEc
Confidence            378999999999999999999999999999999999763322221                       125789999999


Q ss_pred             CC--CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         58 PS--GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        58 ~~--~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      |+  ...+++++.|++|++||+++.+....+.+|.+.++.+.++|||..+++|+.||.+.+||++.+.
T Consensus       158 P~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k  225 (315)
T KOG0279|consen  158 PNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK  225 (315)
T ss_pred             CCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence            98  6899999999999999999999999999999999999999999999999999999999998764

>KOG0271|consensus

Probab=99.93  E-value=4.1e-25  Score=137.92  Aligned_cols=122  Identities=25%  Similarity=0.365  Sum_probs=107.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcc----------------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYT----------------------------------------   40 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~----------------------------------------   40 (125)
                      |++++.||.|+|||+..++++..+.+|+.+|++++|-+..                                        
T Consensus       220 las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd  299 (480)
T KOG0271|consen  220 LASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTD  299 (480)
T ss_pred             eecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccch
Confidence            5788999999999998888999999999999999984200                                        


Q ss_pred             ------------------------------------------------------------cccccCCCCCeEEEEECCCC
Q psy14458         41 ------------------------------------------------------------TEAGTRQGSPVSALCVDPSG   60 (125)
Q Consensus        41 ------------------------------------------------------------~~~~~~~~~~i~~~~~~~~~   60 (125)
                                                                                  +.....|..-|+.+.|||++
T Consensus       300 y~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~  379 (480)
T KOG0271|consen  300 YVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG  379 (480)
T ss_pred             hhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc
Confidence                                                                        00112455779999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        61 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .++++++-|+.|++||.++++.+.+|++|-+.|..++|+.|.+++++|+.|.++++|++++.
T Consensus       380 r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk  441 (480)
T KOG0271|consen  380 RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK  441 (480)
T ss_pred             cEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence            99999999999999999999999999999999999999999999999999999999999875

>KOG0263|consensus

Probab=99.91  E-value=9.8e-24  Score=140.41  Aligned_cols=121  Identities=29%  Similarity=0.503  Sum_probs=112.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc----------------------cCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG----------------------TRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------------~~~~~~i~~~~~~~   58 (125)
                      |||++.|++.++|.....+++..+.+|...+.++.|++......                      .+|..+|.++++||
T Consensus       508 Fatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp  587 (707)
T KOG0263|consen  508 FATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP  587 (707)
T ss_pred             EEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC
Confidence            68999999999999999999999999999999999987443222                      37889999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      .|.+|++|++||.|.+||+.+++.+..+.+|++.|.++.|+.+|.+|++|+.|.+|++||+..
T Consensus       588 ~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  588 CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            999999999999999999999999999999999999999999999999999999999999864

>KOG0272|consensus

Probab=99.91  E-value=3.2e-24  Score=134.90  Aligned_cols=124  Identities=23%  Similarity=0.293  Sum_probs=113.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcc-c-----------------------ccccCCCCCeEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYT-T-----------------------EAGTRQGSPVSALCV   56 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~-----------------------~~~~~~~~~i~~~~~   56 (125)
                      |+||+.+|.+++|+..+...++.|.+|...+.++.|++.. -                       .....|...|..++|
T Consensus       190 laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~Vaf  269 (459)
T KOG0272|consen  190 LATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAF  269 (459)
T ss_pred             EEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeee
Confidence            6899999999999999999999999999999999998752 1                       111256688999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCC
Q psy14458         57 DPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMR  124 (125)
Q Consensus        57 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  124 (125)
                      +|+|.+|++++-|.+-++||+++++.+...++|...|.+++|+|||.++++|+.|..-+|||+|++..
T Consensus       270 HPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~  337 (459)
T KOG0272|consen  270 HPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC  337 (459)
T ss_pred             cCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE
Confidence            99999999999999999999999999998999999999999999999999999999999999999853

>KOG0285|consensus

Probab=99.91  E-value=3e-23  Score=128.84  Aligned_cols=123  Identities=24%  Similarity=0.346  Sum_probs=109.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcc----------------------cccccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYT----------------------TEAGTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~----------------------~~~~~~~~~~i~~~~~~~   58 (125)
                      |+||+.|++|+|||+.+++...++.+|-..++.+.+...-                      +...-.|-+.|.|++.+|
T Consensus       166 f~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP  245 (460)
T KOG0285|consen  166 FATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHP  245 (460)
T ss_pred             EEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccc
Confidence            6899999999999999999999999998888888875311                      122235668999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .-..+++|+.|..+++||+++...+..+.+|+..|..+.+.|-.-.+++||.|++|++||++.+.
T Consensus       246 Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk  310 (460)
T KOG0285|consen  246 TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK  310 (460)
T ss_pred             cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc
Confidence            99999999999999999999999999999999999999999977789999999999999998763

>KOG0266|consensus

Probab=99.91  E-value=4.7e-23  Score=136.06  Aligned_cols=103  Identities=28%  Similarity=0.596  Sum_probs=97.3

Q ss_pred             CeeecCCCeEEEEEC-CCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDI-RGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      +++++.|++|++||+ ..+..+.++.+|.                    ..+++++|+|.++++++|+.|++|++||+++
T Consensus       218 l~s~s~D~tiriwd~~~~~~~~~~l~gH~--------------------~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~  277 (456)
T KOG0266|consen  218 LLSGSDDKTLRIWDLKDDGRNLKTLKGHS--------------------TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT  277 (456)
T ss_pred             EEEecCCceEEEeeccCCCeEEEEecCCC--------------------CceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence            579999999999999 5557889999998                    7889999999999999999999999999999


Q ss_pred             CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +++...+.+|...|++++|++++.++++++.|+.|++||+.++.
T Consensus       278 ~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  278 GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS  321 (456)
T ss_pred             CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence            99999999999999999999999999999999999999998875

>KOG0271|consensus

Probab=99.91  E-value=7.7e-23  Score=127.89  Aligned_cols=121  Identities=22%  Similarity=0.305  Sum_probs=106.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccc-----------------------ccCCCCCeEEEEEC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEA-----------------------GTRQGSPVSALCVD   57 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----------------------~~~~~~~i~~~~~~   57 (125)
                      |+||+.|.++++||+.+..+..+.++|..-|.++.|.+.....                       ..+|...|++++|.
T Consensus       130 l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawe  209 (480)
T KOG0271|consen  130 LVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWE  209 (480)
T ss_pred             EEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeec
Confidence            6899999999999999999999999999999999997643322                       24788999999998


Q ss_pred             C-----CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         58 P-----SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        58 ~-----~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      |     ...++++++.||.++|||+..+.++..+.+|..+|+|++|-.+ .+|++|+.|++|++|+...+
T Consensus       210 p~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG  278 (480)
T KOG0271|consen  210 PLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDG  278 (480)
T ss_pred             ccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccch
Confidence            7     4578999999999999999999999999999999999999544 48999999999999987553

>KOG0295|consensus

Probab=99.91  E-value=1.2e-22  Score=126.04  Aligned_cols=123  Identities=24%  Similarity=0.364  Sum_probs=108.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccc----------------------ccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEA----------------------GTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------------------~~~~~~~i~~~~~~~   58 (125)
                      +++++.|.+|+.|+..++-++++|.+|..-++.++.+......                      ...|..++.|++|-|
T Consensus       208 ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap  287 (406)
T KOG0295|consen  208 ILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAP  287 (406)
T ss_pred             eeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecc
Confidence            5799999999999999999999999999888888876533222                      236778899999987


Q ss_pred             C----------C-----CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         59 S----------G-----RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        59 ~----------~-----~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .          +     .++++++.|++|++||+.++.++.++.+|.++|+.++|+|.|++|+++..|+++++||++++.
T Consensus       288 ~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~  367 (406)
T KOG0295|consen  288 ESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ  367 (406)
T ss_pred             cccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence            3          2     488999999999999999999999999999999999999999999999999999999998864

>KOG0286|consensus

Probab=99.90  E-value=5.3e-23  Score=124.68  Aligned_cols=103  Identities=37%  Similarity=0.609  Sum_probs=98.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP-SGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |+|++.|.+..+||+++++.+..|.+|.                    .-|.+++++| +++.+++|+-|+..++||++.
T Consensus       159 ilT~SGD~TCalWDie~g~~~~~f~GH~--------------------gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~  218 (343)
T KOG0286|consen  159 ILTGSGDMTCALWDIETGQQTQVFHGHT--------------------GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS  218 (343)
T ss_pred             eEecCCCceEEEEEcccceEEEEecCCc--------------------ccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence            5899999999999999999999999999                    6678889999 889999999999999999999


Q ss_pred             CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.+.+.|.+|...|++++|.|+|.-+++|+.|++.++||+|...
T Consensus       219 ~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~  262 (343)
T KOG0286|consen  219 GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ  262 (343)
T ss_pred             cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCc
Confidence            99999999999999999999999999999999999999999854

>PTZ00421 coronin; Provisional

Probab=99.90  E-value=4.4e-22  Score=131.92  Aligned_cols=103  Identities=20%  Similarity=0.368  Sum_probs=90.6

Q ss_pred             CeeecCCCeEEEEECCCCc-------ceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcE
Q psy14458          1 MVSGHEDSSCVLYDIRGSR-------PLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSC   72 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i   72 (125)
                      |++|+.|++|++||+..+.       ++..+.+|.                    ..|.+++|+|++ +++++++.|+.|
T Consensus        91 LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~--------------------~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421         91 LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT--------------------KKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             EEEEeCCCEEEEEecCCCccccccCcceEEecCCC--------------------CcEEEEEeCcCCCCEEEEEeCCCEE
Confidence            5899999999999997642       234445554                    789999999985 799999999999


Q ss_pred             EEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         73 VLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        73 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ++||+.+++.+..+..|...|.+++|+|++.++++++.|++|++||++++.
T Consensus       151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~  201 (493)
T PTZ00421        151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT  201 (493)
T ss_pred             EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence            999999999988899999999999999999999999999999999998753

>KOG0315|consensus

Probab=99.90  E-value=3e-22  Score=119.29  Aligned_cols=78  Identities=17%  Similarity=0.217  Sum_probs=71.2

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         46 RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS-RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        46 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .|..-+..+.+||+.++|++++.|.+++||+..+. +....+.+|...|....|+.|+++|++++.|...++|+++.+.
T Consensus       213 ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  213 AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence            56677889999999999999999999999999887 5566678999999999999999999999999999999998775

>KOG0315|consensus

Probab=99.89  E-value=4.7e-22  Score=118.48  Aligned_cols=121  Identities=18%  Similarity=0.294  Sum_probs=106.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcc-----------------------cccccCCCCCeEEEEEC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYT-----------------------TEAGTRQGSPVSALCVD   57 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------------~~~~~~~~~~i~~~~~~   57 (125)
                      |+|++.|.+|++|.+.+|.|..+++.....|+.+...+..                       ......+...|+.+.|.
T Consensus        13 LvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~   92 (311)
T KOG0315|consen   13 LVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQ   92 (311)
T ss_pred             EEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEe
Confidence            5899999999999999999999999888899988875422                       22223566889999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         58 PSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        58 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .+|+.+++|++||+++|||++...+-+.++ |..+|+++..+|+...|++|..+|.|++||+...
T Consensus        93 ~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen   93 CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             ecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence            999999999999999999999977666666 8899999999999999999999999999999865

>KOG0278|consensus

Probab=99.89  E-value=7.4e-22  Score=117.90  Aligned_cols=122  Identities=20%  Similarity=0.334  Sum_probs=99.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc--------------------cCCCCCeEEEEECCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG--------------------TRQGSPVSALCVDPSG   60 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------------------~~~~~~i~~~~~~~~~   60 (125)
                      |+++..|+.||+||.++++.++.+. ...++.++..........                    ..-+-.|.+..++|+.
T Consensus       158 iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k  236 (334)
T KOG0278|consen  158 ILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK  236 (334)
T ss_pred             EEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCC
Confidence            4677999999999999999888775 344455554433222211                    2333568899999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeEEe-CCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         61 RLMVSGHEDSSCVLYDIRGSRPLQTF-KPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        61 ~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..++.|++|..++.||..+++.+..+ ++|-++|.|+.|+|+|...++||+||+|++|.+..+.
T Consensus       237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            99999999999999999999998886 7999999999999999999999999999999876543

>KOG0286|consensus

Probab=99.88  E-value=1.1e-21  Score=118.97  Aligned_cols=118  Identities=26%  Similarity=0.431  Sum_probs=106.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccccc------------------------CCCCCeEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGT------------------------RQGSPVSALCV   56 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------------~~~~~i~~~~~   56 (125)
                      |++|+-|++.++||++.+.+.+.|.+|...|++++|.+.......                        ....+|++++|
T Consensus       202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~F  281 (343)
T KOG0286|consen  202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAF  281 (343)
T ss_pred             EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEE
Confidence            589999999999999999999999999999999999764332221                        22367999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         57 DPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        57 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      |..|++++.|..|..+.+||...++.+..+.+|++.|+|+..+|||..+++|+=|.++++|.
T Consensus       282 S~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  282 SKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999999999999999999999999999999999999999999994

>KOG0284|consensus

Probab=99.88  E-value=1.7e-22  Score=126.98  Aligned_cols=101  Identities=25%  Similarity=0.440  Sum_probs=96.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |+|++.|++|+|||....+....+.+|.                    ..+.+++|+|+..++++++.|+.|++||.+++
T Consensus       195 F~t~SdDg~ikiWdf~~~kee~vL~GHg--------------------wdVksvdWHP~kgLiasgskDnlVKlWDprSg  254 (464)
T KOG0284|consen  195 FLTCSDDGTIKIWDFRMPKEERVLRGHG--------------------WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG  254 (464)
T ss_pred             eEEecCCCeEEEEeccCCchhheeccCC--------------------CCcceeccCCccceeEEccCCceeEeecCCCc
Confidence            6899999999999999888888888888                    77899999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      +++.++..|++.|..+.|+|++.+|+++|.|..++++|+++
T Consensus       255 ~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  255 SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence            99999999999999999999999999999999999999984

>KOG0291|consensus

Probab=99.88  E-value=1.2e-21  Score=130.86  Aligned_cols=122  Identities=23%  Similarity=0.424  Sum_probs=106.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc-----------------------cCCCCCeEEEEEC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG-----------------------TRQGSPVSALCVD   57 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----------------------~~~~~~i~~~~~~   57 (125)
                      ++||+.|++|+|||..++-|..+|..|+..++.+.|........                       ....-+..|++..
T Consensus       365 iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD  444 (893)
T KOG0291|consen  365 IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVD  444 (893)
T ss_pred             EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEc
Confidence            58999999999999999999999999999999999864332222                       1233467899999


Q ss_pred             CCCCEEEEEeCCCc-EEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         58 PSGRLMVSGHEDSS-CVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        58 ~~~~~~~~~~~~~~-i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      |.|..+..|+.|.. |.+|++.+|+.+-.+.+|+++|.+++|+|++..|+++|-|.+|++||+-..
T Consensus       445 ~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  445 PSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             CCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence            99999999998876 999999999999999999999999999999999999999999999997543

>KOG0302|consensus

Probab=99.88  E-value=7.6e-22  Score=123.11  Aligned_cols=101  Identities=30%  Similarity=0.473  Sum_probs=86.9

Q ss_pred             CeeecCCCeEEEEECCCCcce--eeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPL--QTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~   78 (125)
                      |++|+-|++|+|||++.++..  -..+.|.                    .-|+.|.|+....+|++|+.||+++|||++
T Consensus       273 faScS~DgsIrIWDiRs~~~~~~~~~kAh~--------------------sDVNVISWnr~~~lLasG~DdGt~~iwDLR  332 (440)
T KOG0302|consen  273 FASCSCDGSIRIWDIRSGPKKAAVSTKAHN--------------------SDVNVISWNRREPLLASGGDDGTLSIWDLR  332 (440)
T ss_pred             EEeeecCceEEEEEecCCCccceeEeeccC--------------------CceeeEEccCCcceeeecCCCceEEEEEhh
Confidence            689999999999999987432  2225565                    678888898888899999999999999998


Q ss_pred             C---CceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCC
Q psy14458         79 G---SRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        79 ~---~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      .   ++++..|+.|+.+|+++.|+| +...|++++.|.+|.+||+.-
T Consensus       333 ~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  333 QFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             hccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            7   578899999999999999999 567888899999999999864

>KOG0281|consensus

Probab=99.88  E-value=1.9e-22  Score=125.29  Aligned_cols=121  Identities=30%  Similarity=0.479  Sum_probs=84.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc------------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG------------------------------------   44 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------------------------------   44 (125)
                      +++|+.|.+|++||..+++++.++-+|...|..+.|+...+...                                    
T Consensus       250 iisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd  329 (499)
T KOG0281|consen  250 IVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD  329 (499)
T ss_pred             EEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc
Confidence            46888888888888888888888777777777776643211111                                    


Q ss_pred             ---------------------------cCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEE
Q psy14458         45 ---------------------------TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIR   97 (125)
Q Consensus        45 ---------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~   97 (125)
                                                 .+|.-.|.|+.+  .+.++++|+.|.+|++||+..|.++..+++|+.-|.|+.
T Consensus       330 ~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciR  407 (499)
T KOG0281|consen  330 DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR  407 (499)
T ss_pred             cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhhee
Confidence                                       133344444443  456777777777777777777777777777777777777


Q ss_pred             EccCCCeEEEeecCCeEEEEeCCCCCCC
Q psy14458         98 FSPSAYYLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        98 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      |  |.+-|++|+.||+|++||++++..|
T Consensus       408 F--d~krIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  408 F--DNKRIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             e--cCceeeeccccceEEEEecccccCC
Confidence            7  6667778888888888887776654

>KOG0273|consensus

Probab=99.87  E-value=6.1e-21  Score=121.76  Aligned_cols=123  Identities=21%  Similarity=0.389  Sum_probs=110.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc----------------------ccccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT----------------------EAGTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------~~~~~~~~~i~~~~~~~   58 (125)
                      |++++.|+.|+|+-+....+..++.+|.++|.++.|++...                      ....+|...|..+.|+|
T Consensus       332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp  411 (524)
T KOG0273|consen  332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSP  411 (524)
T ss_pred             EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecC
Confidence            57899999999999999999999999999999999985322                      12237788999999999


Q ss_pred             CCC---------EEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         59 SGR---------LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        59 ~~~---------~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ++.         .+++++.|++|++||+..+.+++.|..|..+|.+++|+|+|+++++|+.||.+.+|+.+++.
T Consensus       412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~  485 (524)
T KOG0273|consen  412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK  485 (524)
T ss_pred             CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence            653         68999999999999999999999999999999999999999999999999999999988763

>KOG0266|consensus

Probab=99.86  E-value=1.1e-20  Score=124.89  Aligned_cols=103  Identities=30%  Similarity=0.535  Sum_probs=94.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      +++|+.|++|++||++++++...+.+|.                    ..|++++|++++.++++++.|+.|++||+.++
T Consensus       261 i~Sgs~D~tvriWd~~~~~~~~~l~~hs--------------------~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~  320 (456)
T KOG0266|consen  261 LVSGSDDGTVRIWDVRTGECVRKLKGHS--------------------DGISGLAFSPDGNLLVSASYDGTIRVWDLETG  320 (456)
T ss_pred             EEEecCCCcEEEEeccCCeEEEeeeccC--------------------CceEEEEECCCCCEEEEcCCCccEEEEECCCC
Confidence            5799999999999999999999999998                    78899999999999999999999999999999


Q ss_pred             c--eeEEeCCCCCc--eeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 R--PLQTFKPHTAD--VRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~--~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .  +...+..+...  ++++.|+|++.++++++.|+.+++||++.+.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~  367 (456)
T KOG0266|consen  321 SKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK  367 (456)
T ss_pred             ceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence            8  55666666555  8999999999999999999999999998764

>KOG0269|consensus

Probab=99.86  E-value=2.4e-21  Score=129.52  Aligned_cols=102  Identities=24%  Similarity=0.484  Sum_probs=92.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS-GRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |++|++||.|++||++..+....+.+..                    ..|..+.|+|. +..|+++.+.|.+.+||++.
T Consensus       149 liSGSQDg~vK~~DlR~~~S~~t~~~nS--------------------ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq  208 (839)
T KOG0269|consen  149 LISGSQDGTVKCWDLRSKKSKSTFRSNS--------------------ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ  208 (839)
T ss_pred             EEecCCCceEEEEeeecccccccccccc--------------------hhhhceeeccCCCceEEEecCCceEEEeeccC
Confidence            5899999999999999998888888766                    78889999995 68899999999999999987


Q ss_pred             C-ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         80 S-RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      . ++...+.+|.++|.|+.|+|++.+|++|+.|+.|++||+.+.
T Consensus       209 p~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~  252 (839)
T KOG0269|consen  209 PDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS  252 (839)
T ss_pred             chhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence            4 567778899999999999999999999999999999999753

>PTZ00420 coronin; Provisional

Probab=99.86  E-value=5.6e-20  Score=123.14  Aligned_cols=102  Identities=18%  Similarity=0.229  Sum_probs=85.3

Q ss_pred             CeeecCCCeEEEEECCCCcc--------eeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCE-EEEEeCCCc
Q psy14458          1 MVSGHEDSSCVLYDIRGSRP--------LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRL-MVSGHEDSS   71 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~   71 (125)
                      |++|+.|++|++||+.++..        +..+.+|                    ...|.+++|+|++.. +++++.|+.
T Consensus        90 LASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH--------------------~~~V~sVaf~P~g~~iLaSgS~Dgt  149 (568)
T PTZ00420         90 LASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH--------------------KKKISIIDWNPMNYYIMCSSGFDSF  149 (568)
T ss_pred             EEEEeCCCeEEEEECCCCCccccccccceEEeecC--------------------CCcEEEEEECCCCCeEEEEEeCCCe
Confidence            58999999999999976421        1223333                    378999999998865 578999999


Q ss_pred             EEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         72 CVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        72 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      |++||+++++....+. |...|.+++|+|+|.++++++.|+.|++||++++.
T Consensus       150 IrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~  200 (568)
T PTZ00420        150 VNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE  200 (568)
T ss_pred             EEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence            9999999998777776 66789999999999999999999999999998764

>KOG0284|consensus

Probab=99.86  E-value=3.3e-21  Score=121.23  Aligned_cols=123  Identities=18%  Similarity=0.318  Sum_probs=105.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc----------------------cCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG----------------------TRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------------~~~~~~i~~~~~~~   58 (125)
                      |++|+..|...+|+..+-.-...++.|..+|+++.|........                      ..+...|++++|+|
T Consensus       111 Lltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSp  190 (464)
T KOG0284|consen  111 LLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSP  190 (464)
T ss_pred             eEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCC
Confidence            68999999999999855444445678999999999965332222                      14458999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ++..|+++++||+|+|||....+....+.+|.-.|.+++|+|...++++++.|..|++||.+++.
T Consensus       191 nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~  255 (464)
T KOG0284|consen  191 NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS  255 (464)
T ss_pred             CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence            99999999999999999999888888889999999999999999999999999999999999875

>KOG0295|consensus

Probab=99.85  E-value=2.2e-20  Score=116.08  Aligned_cols=100  Identities=23%  Similarity=0.413  Sum_probs=95.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      +.++++|++|++||+.++.++.++.+|.                    ..|..++|+|.|++++++.+|+++++||++++
T Consensus       307 l~s~SrDktIk~wdv~tg~cL~tL~ghd--------------------nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~  366 (406)
T KOG0295|consen  307 LGSGSRDKTIKIWDVSTGMCLFTLVGHD--------------------NWVRGVAFSPGGKYILSCADDKTLRVWDLKNL  366 (406)
T ss_pred             EEeecccceEEEEeccCCeEEEEEeccc--------------------ceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence            4689999999999999999999999998                    89999999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ++...+.+|..-|+++.|+-+..++++|+-|.++++|..+
T Consensus       367 ~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEcr  406 (406)
T KOG0295|consen  367 QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  406 (406)
T ss_pred             eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeecC
Confidence            9999999999999999999988999999999999999754

>KOG0275|consensus

Probab=99.85  E-value=1.1e-21  Score=121.24  Aligned_cols=102  Identities=19%  Similarity=0.331  Sum_probs=97.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeec-CCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |++|+.||+|++|-+.+|.|+..|. .|.                    ..|+|+.|+.++..+.+++.|.++++.-++.
T Consensus       278 lAsGsqDGkIKvWri~tG~ClRrFdrAHt--------------------kGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS  337 (508)
T KOG0275|consen  278 LASGSQDGKIKVWRIETGQCLRRFDRAHT--------------------KGVTCLSFSRDNSQILSASFDQTVRIHGLKS  337 (508)
T ss_pred             hhccCcCCcEEEEEEecchHHHHhhhhhc--------------------cCeeEEEEccCcchhhcccccceEEEecccc
Confidence            5899999999999999999999887 566                    8999999999999999999999999999999


Q ss_pred             CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++++..|++|...|+...|.+||.++++++.||++++|+..+.
T Consensus       338 GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt  380 (508)
T KOG0275|consen  338 GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT  380 (508)
T ss_pred             chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch
Confidence            9999999999999999999999999999999999999998765

>KOG0316|consensus

Probab=99.85  E-value=2.3e-20  Score=110.74  Aligned_cols=102  Identities=18%  Similarity=0.317  Sum_probs=96.8

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      ++++.|.+|++||...+.++.++.+|.                    ..|..++.+.+...+++++.|..+.+||+.+++
T Consensus        33 ltcGsdrtvrLWNp~rg~liktYsghG--------------------~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk   92 (307)
T KOG0316|consen   33 LTCGSDRTVRLWNPLRGALIKTYSGHG--------------------HEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK   92 (307)
T ss_pred             EEcCCCceEEeecccccceeeeecCCC--------------------ceeeeccccccccccccCCCCceEEEEEcccCe
Confidence            689999999999999999999999998                    677888999999999999999999999999999


Q ss_pred             eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         82 PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..+.|++|.+.|+.++|+.+...+++|+.|.++++||.++..
T Consensus        93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s  134 (307)
T KOG0316|consen   93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS  134 (307)
T ss_pred             eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC
Confidence            999999999999999999999999999999999999998764

>KOG0319|consensus

Probab=99.85  E-value=2e-20  Score=124.53  Aligned_cols=103  Identities=21%  Similarity=0.351  Sum_probs=98.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      ++|||.|.+.++|++.......++.+|.                    ..+.|+.|+|....+++++.|++|+||.+.+.
T Consensus       478 iAT~SqDktaKiW~le~~~l~~vLsGH~--------------------RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f  537 (775)
T KOG0319|consen  478 IATGSQDKTAKIWDLEQLRLLGVLSGHT--------------------RGVWCVSFSKNDQLLATCSGDKTVKIWSISTF  537 (775)
T ss_pred             EEecccccceeeecccCceEEEEeeCCc--------------------cceEEEEeccccceeEeccCCceEEEEEeccc
Confidence            5899999999999999888899999999                    78899999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .++.+|.+|...|....|-.+++.+++++.||-+++|++.++.
T Consensus       538 SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e  580 (775)
T KOG0319|consen  538 SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE  580 (775)
T ss_pred             eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence            9999999999999999999999999999999999999998764

>KOG0279|consensus

Probab=99.85  E-value=3.8e-20  Score=111.71  Aligned_cols=101  Identities=27%  Similarity=0.464  Sum_probs=90.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |+++++|++|++||+++.+....+.+|.                    ..++.+++||+|.+.++|+.||.+.+||++.+
T Consensus       165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~--------------------~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~  224 (315)
T KOG0279|consen  165 IVSASWDKTVKVWNLRNCQLRTTFIGHS--------------------GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG  224 (315)
T ss_pred             EEEccCCceEEEEccCCcchhhcccccc--------------------ccEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence            5789999999999999999988888888                    78999999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.+..+. |...|++++|+|+.-+|+.+.. ..|++||+.++.
T Consensus       225 k~lysl~-a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~  265 (315)
T KOG0279|consen  225 KNLYSLE-AFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKA  265 (315)
T ss_pred             ceeEecc-CCCeEeeEEecCCceeEeeccC-CceEEEeccchh
Confidence            9998887 8899999999999776666654 449999998753

>KOG0292|consensus

Probab=99.84  E-value=2.4e-20  Score=126.83  Aligned_cols=122  Identities=14%  Similarity=0.247  Sum_probs=110.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc----------------------cCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG----------------------TRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------------~~~~~~i~~~~~~~   58 (125)
                      ++++--.|.|.+||.+.+.++..|..|.+||+.+.|++.+....                      .+|-+-|..+.|++
T Consensus        24 ILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh  103 (1202)
T KOG0292|consen   24 ILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH  103 (1202)
T ss_pred             EEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC
Confidence            46778889999999999999999999999999999987443222                      36678899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ....++++++|.+|+||+..+++++..+.+|+..|.|.+|+|....++++|.|.+|++||+.+.
T Consensus       104 eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL  167 (1202)
T KOG0292|consen  104 EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL  167 (1202)
T ss_pred             CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence            9999999999999999999999999999999999999999999999999999999999998653

>KOG0276|consensus

Probab=99.84  E-value=6.6e-20  Score=120.79  Aligned_cols=123  Identities=19%  Similarity=0.319  Sum_probs=110.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc-----------------------cCCCCCeEEEEEC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG-----------------------TRQGSPVSALCVD   57 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----------------------~~~~~~i~~~~~~   57 (125)
                      +++|+.|..|+||+..++..+..|..|..=|+++..++......                       ..|..-|.+++|.
T Consensus        70 iv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fn  149 (794)
T KOG0276|consen   70 IVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFN  149 (794)
T ss_pred             EEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEec
Confidence            47999999999999999999999999999999999887543332                       2677889999999


Q ss_pred             CCC-CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEcc--CCCeEEEeecCCeEEEEeCCCCC
Q psy14458         58 PSG-RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP--SAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        58 ~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      |.+ +.+++++-|++|++|++-...+-+++++|...|+|+.|-+  |..++++|+.|.++++||.++..
T Consensus       150 PkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~  218 (794)
T KOG0276|consen  150 PKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS  218 (794)
T ss_pred             CCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH
Confidence            965 8999999999999999999999999999999999999988  45799999999999999998753

>KOG0645|consensus

Probab=99.84  E-value=2.7e-19  Score=107.71  Aligned_cols=120  Identities=18%  Similarity=0.293  Sum_probs=100.4

Q ss_pred             CeeecCCCeEEEEECCCC---cceeeec-CCCCCeEEEEecCcccccc------------------------cCCCCCeE
Q psy14458          1 MVSGHEDSSCVLYDIRGS---RPLQTFK-PHTADVRSIHLDHYTTEAG------------------------TRQGSPVS   52 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~---~~~~~~~-~~~~~i~~~~~~~~~~~~~------------------------~~~~~~i~   52 (125)
                      |+||+.|+.|++|+...+   .+...+. +|...|+.++|.+......                        -.|...|-
T Consensus        30 lAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK  109 (312)
T KOG0645|consen   30 LASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK  109 (312)
T ss_pred             EEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee
Confidence            689999999999998753   3333343 5889999999966433221                        26778999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCC---ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         53 ALCVDPSGRLMVSGHEDSSCVLYDIRGS---RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      |++|+++|++|++++.|+.|-+|.....   ++...+..|...|..+.|+|...+|++++.|.+|++|.-.
T Consensus       110 ~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~  180 (312)
T KOG0645|consen  110 CVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDE  180 (312)
T ss_pred             EEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeec
Confidence            9999999999999999999999998754   4677788999999999999999999999999999999754

>KOG0313|consensus

Probab=99.84  E-value=3.9e-20  Score=115.53  Aligned_cols=104  Identities=26%  Similarity=0.431  Sum_probs=91.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      ++++++|.+|+.||+.++.....+...                     ..+.|+..+|...++++|+.|..+++||.+++
T Consensus       274 ~yS~SwDHTIk~WDletg~~~~~~~~~---------------------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  274 IYSVSWDHTIKVWDLETGGLKSTLTTN---------------------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             eEeecccceEEEEEeecccceeeeecC---------------------cceeEeecccccceeeecCCCCceeecCCCCC
Confidence            468999999999999999988777644                     58899999999999999999999999999986


Q ss_pred             c---eeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCCCCC
Q psy14458         81 R---PLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        81 ~---~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      .   ..+.+.+|++.|.++.|+| +..+|++++.|+++++||+|+...|
T Consensus       333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p  381 (423)
T KOG0313|consen  333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP  381 (423)
T ss_pred             CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc
Confidence            3   4556779999999999999 5578899999999999999987644

>KOG0305|consensus

Probab=99.84  E-value=7.1e-20  Score=119.49  Aligned_cols=123  Identities=23%  Similarity=0.385  Sum_probs=108.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecC-CCCCeEEEEecCcccc---------------------cccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKP-HTADVRSIHLDHYTTE---------------------AGTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~---------------------~~~~~~~~i~~~~~~~   58 (125)
                      |+.|..+|.|.|||....+.+..+.+ |...|.++.|+.....                     ....|...|+.+.|++
T Consensus       232 LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~  311 (484)
T KOG0305|consen  232 LAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP  311 (484)
T ss_pred             EEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence            57899999999999999999999888 8999999999752211                     2446889999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEcc-CCCeEEEee--cCCeEEEEeCCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP-SAYYLLTGG--YDNKLVLTDLQGTM  123 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~--~d~~i~~~~~~~~~  123 (125)
                      ++.++++|+.|+.+.|||....++...+..|.+.|.+++|+| ...+||+|+  .|++|++||..++.
T Consensus       312 d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~  379 (484)
T KOG0305|consen  312 DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA  379 (484)
T ss_pred             CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence            999999999999999999988888888999999999999999 778888876  59999999998764

>KOG0319|consensus

Probab=99.84  E-value=4.8e-20  Score=122.79  Aligned_cols=123  Identities=18%  Similarity=0.320  Sum_probs=104.1

Q ss_pred             CeeecCCCeEEEEECCCCc----ceeeecCCCCCeEEEEecCcc---------------------------c-----ccc
Q psy14458          1 MVSGHEDSSCVLYDIRGSR----PLQTFKPHTADVRSIHLDHYT---------------------------T-----EAG   44 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~----~~~~~~~~~~~i~~~~~~~~~---------------------------~-----~~~   44 (125)
                      |+||+.|+++++|-+..+.    ++....+|...|.+++.....                           +     ...
T Consensus       380 lat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~  459 (775)
T KOG0319|consen  380 LATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE  459 (775)
T ss_pred             EEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence            5899999999999774432    345567888888888763210                           0     112


Q ss_pred             cCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         45 TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        45 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..|.+.|+|++++|+..++++|+.|.+.++|++........+.+|+..|.++.|+|..+.++++|+|.+|++|.+++..
T Consensus       460 ~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS  538 (775)
T KOG0319|consen  460 RAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS  538 (775)
T ss_pred             HhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce
Confidence            3677899999999999999999999999999999889999999999999999999999999999999999999998753

>KOG0273|consensus

Probab=99.83  E-value=1.5e-19  Score=115.52  Aligned_cols=119  Identities=15%  Similarity=0.343  Sum_probs=106.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcc-------------------------------cccccCCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYT-------------------------------TEAGTRQGS   49 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------------------~~~~~~~~~   49 (125)
                      |++++.|+++++|+.....+...++.|..+|+.+.|.+..                               +.....|..
T Consensus       374 LaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~  453 (524)
T KOG0273|consen  374 LASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE  453 (524)
T ss_pred             EEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC
Confidence            6899999999999998888889999999999999986522                               223347889


Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         50 PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      +|.+++|+|+++++++|+.||.|.+|+.++++.+++.. ..+.|..++|+.+|..+..+-.|+.+++.|++
T Consensus       454 pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  454 PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-GTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            99999999999999999999999999999999999888 56679999999999999999999999999986

>KOG0276|consensus

Probab=99.83  E-value=2.7e-20  Score=122.55  Aligned_cols=102  Identities=20%  Similarity=0.327  Sum_probs=95.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC--CEEEEEeCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG--RLMVSGHEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~d~~   78 (125)
                      |++++-|++|+||.+.+..+..++.+|.                    ..|+|+++-+.+  +++++|++|.++++||..
T Consensus       156 FaS~sLDrTVKVWslgs~~~nfTl~gHe--------------------kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ  215 (794)
T KOG0276|consen  156 FASASLDRTVKVWSLGSPHPNFTLEGHE--------------------KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ  215 (794)
T ss_pred             eeeeeccccEEEEEcCCCCCceeeeccc--------------------cCcceEEeccCCCcceEEecCCCceEEEeecc
Confidence            6899999999999999999999999998                    888999998855  799999999999999999


Q ss_pred             CCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         79 GSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +..++.++++|.+.|+.+.|+|.-.++++|++||++++|+-.+-
T Consensus       216 tk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  216 TKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             hHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence            99999999999999999999999999999999999999987653

>PTZ00421 coronin; Provisional

Probab=99.83  E-value=3.8e-19  Score=118.10  Aligned_cols=104  Identities=15%  Similarity=0.286  Sum_probs=89.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++++.|+.|++||+.+++....+..|.                    ..|.+++|+|++.++++++.|+.|++||++++
T Consensus       141 LaSgs~DgtVrIWDl~tg~~~~~l~~h~--------------------~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg  200 (493)
T PTZ00421        141 LASAGADMVVNVWDVERGKAVEVIKCHS--------------------DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG  200 (493)
T ss_pred             EEEEeCCCEEEEEECCCCeEEEEEcCCC--------------------CceEEEEEECCCCEEEEecCCCEEEEEECCCC
Confidence            5789999999999999988888887777                    78899999999999999999999999999999


Q ss_pred             ceeEEeCCCCCc-eeEEEEccCCCeEEEee----cCCeEEEEeCCCCCC
Q psy14458         81 RPLQTFKPHTAD-VRSIRFSPSAYYLLTGG----YDNKLVLTDLQGTMR  124 (125)
Q Consensus        81 ~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~----~d~~i~~~~~~~~~~  124 (125)
                      +.+..+..|.+. +..+.|.+++..+++++    .|+.|++||+++...
T Consensus       201 ~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~  249 (493)
T PTZ00421        201 TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS  249 (493)
T ss_pred             cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence            988888888764 44678888877776654    489999999987543

>KOG0277|consensus

Probab=99.83  E-value=1.5e-19  Score=108.12  Aligned_cols=105  Identities=24%  Similarity=0.377  Sum_probs=92.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS-GRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~d~~~   79 (125)
                      ++++++|++|++|+...++.+.+|.+|.                    .-|...+|+|. .+++++++.|+++++||++.
T Consensus       120 ~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~--------------------~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~  179 (311)
T KOG0277|consen  120 FLTSSWDGTIKLWDPNRPNSVQTFNGHN--------------------SCIYQAAFSPHIPNLFASASGDGTLRLWDVRS  179 (311)
T ss_pred             EEeeccCCceEeecCCCCcceEeecCCc--------------------cEEEEEecCCCCCCeEEEccCCceEEEEEecC
Confidence            4688999999999999899999999988                    77888899995 68999999999999999987


Q ss_pred             CceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      .-....+..|..++.+..|+. +...+++|+.|+.|+.||+++...|
T Consensus       180 ~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p  226 (311)
T KOG0277|consen  180 PGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP  226 (311)
T ss_pred             CCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc
Confidence            544444889999999999988 8889999999999999999987654

>KOG0264|consensus

Probab=99.83  E-value=2e-19  Score=113.96  Aligned_cols=101  Identities=29%  Similarity=0.551  Sum_probs=86.5

Q ss_pred             CeeecCCCeEEEEECCC--CcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEc
Q psy14458          1 MVSGHEDSSCVLYDIRG--SRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDI   77 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~   77 (125)
                      |++.+.|+.+.|||+++  .++......|.                    ..+.|++|+|.+ ..|++|+.|++|.+||+
T Consensus       243 F~sv~dd~~L~iwD~R~~~~~~~~~~~ah~--------------------~~vn~~~fnp~~~~ilAT~S~D~tV~LwDl  302 (422)
T KOG0264|consen  243 FGSVGDDGKLMIWDTRSNTSKPSHSVKAHS--------------------AEVNCVAFNPFNEFILATGSADKTVALWDL  302 (422)
T ss_pred             heeecCCCeEEEEEcCCCCCCCcccccccC--------------------CceeEEEeCCCCCceEEeccCCCcEEEeec
Confidence            57899999999999995  44455555666                    788899999965 67899999999999999


Q ss_pred             CCC-ceeEEeCCCCCceeEEEEccC-CCeEEEeecCCeEEEEeCCC
Q psy14458         78 RGS-RPLQTFKPHTADVRSIRFSPS-AYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        78 ~~~-~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~i~~~~~~~  121 (125)
                      |+. +++.++..|+..|.++.|+|+ ...+++++.|+.+.+||+..
T Consensus       303 RnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  303 RNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             hhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            984 688899999999999999995 56888899999999999864

>KOG0289|consensus

Probab=99.83  E-value=2.4e-19  Score=113.81  Aligned_cols=121  Identities=21%  Similarity=0.350  Sum_probs=104.2

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc----------------------cC--CCCCeEEEEEC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG----------------------TR--QGSPVSALCVD   57 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------------~~--~~~~i~~~~~~   57 (125)
                      ++++.|..|+||.............|..+|+.+..++......                      ..  ..-.+++.+|+
T Consensus       277 ~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH  356 (506)
T KOG0289|consen  277 ITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH  356 (506)
T ss_pred             eecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc
Confidence            6789999999999987777777788999999888765322211                      11  12348999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         58 PSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        58 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      |+|..|++|..|+.+++||+..+..+..|.+|.++|..++|+.+|-++++++.|+.|++||+|..
T Consensus       357 pDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl  421 (506)
T KOG0289|consen  357 PDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL  421 (506)
T ss_pred             CCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence            99999999999999999999999999999999999999999999999999999999999999864

>KOG0274|consensus

Probab=99.83  E-value=3.9e-19  Score=118.66  Aligned_cols=119  Identities=26%  Similarity=0.413  Sum_probs=105.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccc-------------------c-cCCCCCeEEEEECCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEA-------------------G-TRQGSPVSALCVDPSG   60 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------------~-~~~~~~i~~~~~~~~~   60 (125)
                      |++|+.|.++++||..++.+...+.+|...++++...+.....                   . .+|..+|.++..+  +
T Consensus       264 lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~  341 (537)
T KOG0274|consen  264 LVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--E  341 (537)
T ss_pred             EEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--C
Confidence            5789999999999999999999999999999888865432222                   1 2488999999997  8


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        61 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .++++|+.|++|++||+.+++++.++.+|..+|.++.+.+. ..+++|+.|++|++||+++.
T Consensus       342 ~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  342 PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCch
Confidence            89999999999999999999999999999999999988554 89999999999999999876

>KOG1407|consensus

Probab=99.82  E-value=4.2e-19  Score=106.55  Aligned_cols=79  Identities=20%  Similarity=0.289  Sum_probs=73.8

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCC
Q psy14458         46 RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMR  124 (125)
Q Consensus        46 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  124 (125)
                      +|+....||.|+|+|+++++|+.|..+.+||+...-+++.+..+.-+|+.++|+.||++|+++|+|-.|-|=+++++.+
T Consensus       187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~  265 (313)
T KOG1407|consen  187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR  265 (313)
T ss_pred             cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence            6778889999999999999999999999999999889999999999999999999999999999999999988887753

>KOG0318|consensus

Probab=99.82  E-value=5e-19  Score=114.55  Aligned_cols=102  Identities=17%  Similarity=0.354  Sum_probs=91.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      ++||++|+.|-+|+-...+-...++.|.                    ..|.|+.++|+|+++++.+.||.+.+||-.++
T Consensus       163 i~T~sdDn~v~ffeGPPFKFk~s~r~Hs--------------------kFV~~VRysPDG~~Fat~gsDgki~iyDGktg  222 (603)
T KOG0318|consen  163 IATGSDDNTVAFFEGPPFKFKSSFREHS--------------------KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG  222 (603)
T ss_pred             EEeccCCCeEEEeeCCCeeeeecccccc--------------------cceeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence            4788889988888855545555566666                    88999999999999999999999999999999


Q ss_pred             ceeEEeC---CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         81 RPLQTFK---PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +.+..+.   +|++.|.+++|+||+..+++++.|.++++||+.+.
T Consensus       223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~  267 (603)
T KOG0318|consen  223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN  267 (603)
T ss_pred             cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc
Confidence            9999998   89999999999999999999999999999999765

>KOG0282|consensus

Probab=99.81  E-value=8.3e-20  Score=116.81  Aligned_cols=101  Identities=27%  Similarity=0.420  Sum_probs=93.0

Q ss_pred             CeeecCCCeEEEEECCC-CcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRG-SRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |++++.|+.|++|++.. ++++.+|.+|.                    .+|..++|++++..+++++-|+.+++||+.+
T Consensus       230 lLS~gmD~~vklW~vy~~~~~lrtf~gH~--------------------k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET  289 (503)
T KOG0282|consen  230 LLSGGMDGLVKLWNVYDDRRCLRTFKGHR--------------------KPVRDASFNNCGTSFLSASFDRFLKLWDTET  289 (503)
T ss_pred             EEecCCCceEEEEEEecCcceehhhhcch--------------------hhhhhhhccccCCeeeeeecceeeeeecccc
Confidence            58999999999999976 78899999998                    7888999999999999999999999999999


Q ss_pred             CceeEEeCCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~  122 (125)
                      |+++..|. ....+.|+.|+|++ +.+++|+.|+.|+.||+|++
T Consensus       290 G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~  332 (503)
T KOG0282|consen  290 GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG  332 (503)
T ss_pred             ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence            99999997 55678899999987 88899999999999999986

>KOG0316|consensus

Probab=99.81  E-value=5.8e-19  Score=104.85  Aligned_cols=122  Identities=19%  Similarity=0.309  Sum_probs=103.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc------------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG------------------------------------   44 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------------------------------   44 (125)
                      |++|+.|..+.+||+.+|+....+.+|..+|+.+.|+.......                                    
T Consensus        74 f~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v  153 (307)
T KOG0316|consen   74 FASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV  153 (307)
T ss_pred             cccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe
Confidence            57899999999999999999999999999999999864111100                                    


Q ss_pred             --------------------------cCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCcee--EE
Q psy14458         45 --------------------------TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVR--SI   96 (125)
Q Consensus        45 --------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~--~~   96 (125)
                                                ..-+.+|+|++++++++..+.++.++++++.|-.+++.+.++++|++.=.  ..
T Consensus       154 ~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc  233 (307)
T KOG0316|consen  154 AEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC  233 (307)
T ss_pred             cccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence                                      12347999999999999999999999999999999999999999987543  34


Q ss_pred             EEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         97 RFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        97 ~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +++....++++|++||.+++||+...
T Consensus       234 ~l~qsdthV~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  234 CLNQSDTHVFSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             eecccceeEEeccCCceEEEEEeccc
Confidence            66777789999999999999998654

>KOG0772|consensus

Probab=99.81  E-value=1.6e-19  Score=116.74  Aligned_cols=110  Identities=26%  Similarity=0.461  Sum_probs=87.5

Q ss_pred             CeeecCCCeEEEEECCCC-cceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGS-RPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |+|+++|+++++||+... +++++|+.....               ...-+++.++|+|+++.++.|+.||.|.+|+...
T Consensus       284 FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~---------------g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~  348 (641)
T KOG0772|consen  284 FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG---------------GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGS  348 (641)
T ss_pred             eEEecCCCcEEEEecCCchhheeEEeeccCC---------------CcccCceeeecCCCcchhhhcccCCceeeeecCC
Confidence            689999999999999764 345566532210               0114678999999999999999999999999754


Q ss_pred             C---ceeEEeCCCCC--ceeEEEEccCCCeEEEeecCCeEEEEeCCCCCCC
Q psy14458         80 S---RPLQTFKPHTA--DVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        80 ~---~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      .   .....-.+|..  .++|+.|++||++|++-+.|+++++||++...+|
T Consensus       349 ~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp  399 (641)
T KOG0772|consen  349 RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP  399 (641)
T ss_pred             cccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence            2   23444457877  8999999999999999999999999999987665

>KOG0305|consensus

Probab=99.81  E-value=1.7e-18  Score=113.17  Aligned_cols=122  Identities=23%  Similarity=0.324  Sum_probs=106.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc------------------------cCCCCCeEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG------------------------TRQGSPVSALCV   56 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------------------~~~~~~i~~~~~   56 (125)
                      ||+|++|+.+.|||.....+...+..|...|.++.|.+.....+                        ...+..|+.+.|
T Consensus       316 lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~W  395 (484)
T KOG0305|consen  316 LASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIW  395 (484)
T ss_pred             eccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEE
Confidence            68999999999999988888899999999999999987442222                        245689999999


Q ss_pred             CCCCCEEEE--EeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         57 DPSGRLMVS--GHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        57 ~~~~~~~~~--~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++..+.+++  |..++.|.||+..+.+.+..+.+|...|.+++++|||..+++|+.|.++++|++-..
T Consensus       396 sk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  396 SKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             cCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            999876665  456778999999999999999999999999999999999999999999999998653

>KOG0264|consensus

Probab=99.81  E-value=3.4e-19  Score=112.96  Aligned_cols=105  Identities=30%  Similarity=0.532  Sum_probs=88.0

Q ss_pred             CeeecCCCeEEEEECCCCcc-------eeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC-CCEEEEEeCCCcE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRP-------LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS-GRLMVSGHEDSSC   72 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i   72 (125)
                      |++++.|+.|++||+.....       ...+.+|.                    ..|..++|++. ..+|++.+.|+.+
T Consensus       193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~--------------------~~VeDV~~h~~h~~lF~sv~dd~~L  252 (422)
T KOG0264|consen  193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE--------------------DVVEDVAWHPLHEDLFGSVGDDGKL  252 (422)
T ss_pred             EeeccCCCcEEEEeccccccCCccccceEEeecCC--------------------cceehhhccccchhhheeecCCCeE
Confidence            58999999999999975432       23345555                    78899999995 4788999999999


Q ss_pred             EEEEcC--CCceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCCCCC
Q psy14458         73 VLYDIR--GSRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        73 ~~~d~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      .|||+|  +.+......+|.++|+|++|+| ++.+||+|+.|+++.+||+|+..+|
T Consensus       253 ~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~  308 (422)
T KOG0264|consen  253 MIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP  308 (422)
T ss_pred             EEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC
Confidence            999999  5666777789999999999999 7788899999999999999987653

>KOG0281|consensus

Probab=99.81  E-value=2.2e-19  Score=111.82  Aligned_cols=118  Identities=19%  Similarity=0.356  Sum_probs=96.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccccc--------------------CCC------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGT--------------------RQG------------   48 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------------------~~~------------   48 (125)
                      +++|..|++|+|||..+..+...+.+|++.|.++.++...+....                    .|.            
T Consensus       210 iVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~  289 (499)
T KOG0281|consen  210 IVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGY  289 (499)
T ss_pred             hhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCE
Confidence            478999999999999999999999999999999998754333322                    121            


Q ss_pred             -------------------------------CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEE
Q psy14458         49 -------------------------------SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIR   97 (125)
Q Consensus        49 -------------------------------~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~   97 (125)
                                                     ..|+.+.|+  .+++++++.|.+|++|+..+.+.+..+.+|+..+-|+.
T Consensus       290 mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQ  367 (499)
T KOG0281|consen  290 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ  367 (499)
T ss_pred             EEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehh
Confidence                                           244555553  45889999999999999999999999999999998888


Q ss_pred             EccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         98 FSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        98 ~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +  .++++++|+.|.+|++||...+
T Consensus       368 Y--r~rlvVSGSSDntIRlwdi~~G  390 (499)
T KOG0281|consen  368 Y--RDRLVVSGSSDNTIRLWDIECG  390 (499)
T ss_pred             c--cCeEEEecCCCceEEEEecccc
Confidence            8  8889999999999999998765

>KOG0267|consensus

Probab=99.81  E-value=6.2e-20  Score=122.25  Aligned_cols=121  Identities=23%  Similarity=0.454  Sum_probs=109.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc----------------------cCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG----------------------TRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------------~~~~~~i~~~~~~~   58 (125)
                      |++|+.+|+|++||+...+.+.++.+|..++..+.|+++....+                      ..|...+.++.|+|
T Consensus        85 laagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP  164 (825)
T KOG0267|consen   85 LAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP  164 (825)
T ss_pred             hcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC
Confidence            57899999999999999999999999999999999987554442                      13455688999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      +|.+++.|++|..+++||...++....|..|...+..+.|+|..-++++|+.|+++++||+++
T Consensus       165 ~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet  227 (825)
T KOG0267|consen  165 DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET  227 (825)
T ss_pred             CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence            999999999999999999999999999999999999999999999999999999999999984

>KOG0643|consensus

Probab=99.80  E-value=1.9e-18  Score=104.09  Aligned_cols=122  Identities=23%  Similarity=0.450  Sum_probs=101.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc----------------------------------ccccC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT----------------------------------EAGTR   46 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------------------~~~~~   46 (125)
                      ++||+.|.++++||+.+|+++..++ ...+++.+.|+....                                  ....-
T Consensus        67 liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t  145 (327)
T KOG0643|consen   67 LITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT  145 (327)
T ss_pred             eeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence            5899999999999999999998877 556777777643111                                  11112


Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc-eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         47 QGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR-PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        47 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.+.++.+.|.|-++++++|.++|.|..||+++++ .+.+-+.|...|+.++++||..+++++|.|.+-++||+++.+
T Consensus       146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~  223 (327)
T KOG0643|consen  146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE  223 (327)
T ss_pred             CccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecccee
Confidence            34789999999999999999999999999999975 455557899999999999999999999999999999998753

>PTZ00420 coronin; Provisional

Probab=99.80  E-value=5e-18  Score=113.93  Aligned_cols=103  Identities=20%  Similarity=0.272  Sum_probs=85.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++++.|+.|++||+++++....+. +.                    ..|.+++|+|++.++++++.|+.|++||++++
T Consensus       141 LaSgS~DgtIrIWDl~tg~~~~~i~-~~--------------------~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg  199 (568)
T PTZ00420        141 MCSSGFDSFVNIWDIENEKRAFQIN-MP--------------------KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ  199 (568)
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEe-cC--------------------CcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence            3689999999999999887665554 33                    57899999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeE-----EEEccCCCeEEEeecCC----eEEEEeCCCCCC
Q psy14458         81 RPLQTFKPHTADVRS-----IRFSPSAYYLLTGGYDN----KLVLTDLQGTMR  124 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~-----~~~~~~~~~~~~~~~d~----~i~~~~~~~~~~  124 (125)
                      +.+..+.+|.+.+..     ..|++++.++++++.|+    +|++||+++...
T Consensus       200 ~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~  252 (568)
T PTZ00420        200 EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS  252 (568)
T ss_pred             cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC
Confidence            999889889875433     23568888999988764    799999996543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.80  E-value=4.6e-18  Score=118.97  Aligned_cols=102  Identities=24%  Similarity=0.357  Sum_probs=89.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP-SGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |++++.|+.|++||+.+++.+..+.+|.                    ..|.+++|+| ++.++++|+.|+.|++||+++
T Consensus       548 las~~~Dg~v~lWd~~~~~~~~~~~~H~--------------------~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~  607 (793)
T PLN00181        548 VASSNFEGVVQVWDVARSQLVTEMKEHE--------------------KRVWSIDYSSADPTLLASGSDDGSVKLWSINQ  607 (793)
T ss_pred             EEEEeCCCeEEEEECCCCeEEEEecCCC--------------------CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC
Confidence            5789999999999999988888888887                    7889999997 678999999999999999999


Q ss_pred             CceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +..+..+.. ...+.++.|++ ++.++++|+.|+.|++||+++..
T Consensus       608 ~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~  651 (793)
T PLN00181        608 GVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK  651 (793)
T ss_pred             CcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            888887774 46788999954 79999999999999999998653

>KOG0291|consensus

Probab=99.80  E-value=4.9e-18  Score=113.93  Aligned_cols=122  Identities=18%  Similarity=0.357  Sum_probs=107.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecC-----------------------cccccccCCCCCeEEEEEC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH-----------------------YTTEAGTRQGSPVSALCVD   57 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-----------------------~~~~~~~~~~~~i~~~~~~   57 (125)
                      |++|-..|...+|++.....+..+.-...+|..+.|+.                       ..+-..+.|-..+++++++
T Consensus       280 lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YS  359 (893)
T KOG0291|consen  280 LVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYS  359 (893)
T ss_pred             EEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEEC
Confidence            47888889999999998888888887778888888762                       1223335777899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         58 PSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        58 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      |+|.++++|++||.|++||...+-++.+|..|...|+.+.|+.+++.+++.|.||+++.||+...
T Consensus       360 pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  360 PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY  424 (893)
T ss_pred             CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999998643

>KOG0270|consensus

Probab=99.80  E-value=5.5e-18  Score=107.65  Aligned_cols=121  Identities=20%  Similarity=0.368  Sum_probs=103.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccccc-----------------------CCCCCeEEEEEC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGT-----------------------RQGSPVSALCVD   57 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------------~~~~~i~~~~~~   57 (125)
                      |++|+.|.+|++||+.++++...+..|..+|.++.|++.......                       .-...|..++|.
T Consensus       259 LaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~  338 (463)
T KOG0270|consen  259 LASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWD  338 (463)
T ss_pred             EEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEec
Confidence            689999999999999999999999999999999999875432221                       112578899999


Q ss_pred             CCC-CEEEEEeCCCcEEEEEcCCC-ceeEEeCCCCCceeEEEEccC-CCeEEEeecCCeEEEEeCCC
Q psy14458         58 PSG-RLMVSGHEDSSCVLYDIRGS-RPLQTFKPHTADVRSIRFSPS-AYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        58 ~~~-~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~i~~~~~~~  121 (125)
                      |.. ..++++..||+|+-+|.|.. +++.++++|.++|.++++++. ..++++++.|+.+++|++..
T Consensus       339 ~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  339 PHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             CCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence            976 56788889999999999985 899999999999999999984 56888999999999999864

>KOG1446|consensus

Probab=99.79  E-value=1.2e-17  Score=102.24  Aligned_cols=124  Identities=16%  Similarity=0.202  Sum_probs=95.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEE---------ecCcc----------------cccccCCCCCeEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIH---------LDHYT----------------TEAGTRQGSPVSALC   55 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~---------~~~~~----------------~~~~~~~~~~i~~~~   55 (125)
                      |++++.|++|++||++..++...+.....+|-+..         .....                +..........+.+.
T Consensus       115 FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~  194 (311)
T KOG1446|consen  115 FLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLE  194 (311)
T ss_pred             EEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeE
Confidence            58999999999999998877666554444443322         22110                011113346789999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCce---eEEEEccCCCeEEEeecCCeEEEEeCCCCCC
Q psy14458         56 VDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADV---RSIRFSPSAYYLLTGGYDNKLVLTDLQGTMR  124 (125)
Q Consensus        56 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  124 (125)
                      |+|+|++++.++..+.+++.|.-+|.....+..+.+.-   ....|.||++++++|+.||+|.+|+++++.+
T Consensus       195 FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~  266 (311)
T KOG1446|consen  195 FSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK  266 (311)
T ss_pred             EcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence            99999999999999999999999999888888665432   4678999999999999999999999988753

>KOG0641|consensus

Probab=99.79  E-value=4.6e-18  Score=100.88  Aligned_cols=110  Identities=51%  Similarity=0.857  Sum_probs=95.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++|++|.+|++||++-..++.++.....             ......+.+..+++.|.|.++++|-.|....+||++.+
T Consensus       197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~-------------~~glessavaav~vdpsgrll~sg~~dssc~lydirg~  263 (350)
T KOG0641|consen  197 FASGSQDKTIRFWDLRVNSCVNTLDNDFH-------------DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG  263 (350)
T ss_pred             EEccCCCceEEEEeeeccceeeeccCccc-------------CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC
Confidence            57999999999999998888877653210             01112267999999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.++.+..|...|+|+.|+|...++++++.|..|++-|++...
T Consensus       264 r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl  306 (350)
T KOG0641|consen  264 RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL  306 (350)
T ss_pred             ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence            9999999999999999999999999999999999999998653

>KOG0265|consensus

Probab=99.79  E-value=2.4e-18  Score=104.94  Aligned_cols=121  Identities=19%  Similarity=0.280  Sum_probs=105.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecC----------------------cccccccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------------YTTEAGTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~~~~~~~~~~~i~~~~~~~   58 (125)
                      +++++.|.+++.||+++++++..+++|..-++++....                      ....++...+.+++++.|..
T Consensus       105 i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d  184 (338)
T KOG0265|consen  105 ILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD  184 (338)
T ss_pred             EEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc
Confidence            57899999999999999999999998887777665321                      11222334567899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ++..+.+|.-|+.|++||++.......+++|...|+++..+|+|.++.+-+.|.++++||++-
T Consensus       185 ~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  185 TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecc
Confidence            999999999999999999999999999999999999999999999999999999999999874

>KOG0283|consensus

Probab=99.79  E-value=9.4e-19  Score=117.61  Aligned_cols=83  Identities=18%  Similarity=0.286  Sum_probs=73.5

Q ss_pred             CcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEE
Q psy14458         38 HYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVL  116 (125)
Q Consensus        38 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~  116 (125)
                      ...+....+|...|.++.||.+ .+|++++.|.+|++|++...+++..|. |...|+|++|+| |.+++++|+-|+.+++
T Consensus       359 ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRi  436 (712)
T KOG0283|consen  359 EKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRL  436 (712)
T ss_pred             ccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEE
Confidence            3444445688899999999975 589999999999999999999999998 999999999999 8899999999999999


Q ss_pred             EeCCCC
Q psy14458        117 TDLQGT  122 (125)
Q Consensus       117 ~~~~~~  122 (125)
                      |++...
T Consensus       437 WsI~d~  442 (712)
T KOG0283|consen  437 WSISDK  442 (712)
T ss_pred             eecCcC
Confidence            998653

>KOG0302|consensus

Probab=99.79  E-value=4e-18  Score=106.71  Aligned_cols=121  Identities=26%  Similarity=0.344  Sum_probs=98.6

Q ss_pred             eeecCCCeEEEEECCCC----------------cceeeecCCCCCeEEEEecCcccc-----------------------
Q psy14458          2 VSGHEDSSCVLYDIRGS----------------RPLQTFKPHTADVRSIHLDHYTTE-----------------------   42 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~----------------~~~~~~~~~~~~i~~~~~~~~~~~-----------------------   42 (125)
                      ++-+..|.|.|||+...                +++.++.+|...-+.+.|.+....                       
T Consensus       169 aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v  248 (440)
T KOG0302|consen  169 ASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV  248 (440)
T ss_pred             eeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceee
Confidence            56788899999998642                457778888889999999762111                       


Q ss_pred             ---cccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCc--eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEE
Q psy14458         43 ---AGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRGSR--PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVL  116 (125)
Q Consensus        43 ---~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~  116 (125)
                         -...|+..|..++|||.. .+|++++-||+|+|||++.++  .....++|...|+-|+|+.+-.+|++|+.||++++
T Consensus       249 d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~i  328 (440)
T KOG0302|consen  249 DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSI  328 (440)
T ss_pred             cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEE
Confidence               112577899999999975 789999999999999999872  33344789999999999998789999999999999


Q ss_pred             EeCCCC
Q psy14458        117 TDLQGT  122 (125)
Q Consensus       117 ~~~~~~  122 (125)
                      ||+|.-
T Consensus       329 wDLR~~  334 (440)
T KOG0302|consen  329 WDLRQF  334 (440)
T ss_pred             EEhhhc
Confidence            999864

>KOG0294|consensus

Probab=99.78  E-value=3.2e-18  Score=105.04  Aligned_cols=103  Identities=24%  Similarity=0.396  Sum_probs=92.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCC--EEEEEeCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGR--LMVSGHEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~d~~   78 (125)
                      +++|+.|.+|+|||++....+..+..|.                    ..|+++.|.+...  .|++|++||.|.+|+..
T Consensus        56 ~aSGssDetI~IYDm~k~~qlg~ll~Ha--------------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   56 VASGSSDETIHIYDMRKRKQLGILLSHA--------------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             EeccCCCCcEEEEeccchhhhcceeccc--------------------cceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            5899999999999999998888888887                    6677777777653  89999999999999999


Q ss_pred             CCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         79 GSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .-+.+..+++|.+.|+.++.+|.+++-++.+.|+.++.||+-.+.
T Consensus       116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen  116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            999999999999999999999999999999999999999986553

>KOG0647|consensus

Probab=99.78  E-value=3.7e-18  Score=104.26  Aligned_cols=102  Identities=22%  Similarity=0.435  Sum_probs=84.6

Q ss_pred             CeeecCCCeEEEEECCC-Cccee-eecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRG-SRPLQ-TFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~-~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~   78 (125)
                      ++.|++|++||+|++.. +.... ....+.                    .++.+++|+.++..+++|+.|+.+++||+.
T Consensus        43 ~~A~SWD~tVR~wevq~~g~~~~ka~~~~~--------------------~PvL~v~WsddgskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   43 LAAGSWDGTVRIWEVQNSGQLVPKAQQSHD--------------------GPVLDVCWSDDGSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             EEecccCCceEEEEEecCCcccchhhhccC--------------------CCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence            35899999999999976 33332 223344                    788999999999999999999999999999


Q ss_pred             CCceeEEeCCCCCceeEEEEccCC--CeEEEeecCCeEEEEeCCCCC
Q psy14458         79 GSRPLQTFKPHTADVRSIRFSPSA--YYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +++.. .+..|.++|.++.|-+..  ..|++||=|++|++||+|...
T Consensus       103 S~Q~~-~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~  148 (347)
T KOG0647|consen  103 SGQVS-QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN  148 (347)
T ss_pred             CCCee-eeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence            99644 466799999999998855  489999999999999998653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.78  E-value=4.8e-17  Score=100.21  Aligned_cols=122  Identities=26%  Similarity=0.397  Sum_probs=103.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccc----------------------ccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEA----------------------GTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------------------~~~~~~~i~~~~~~~   58 (125)
                      |++++.|+.|++||+..++....+..+...+.++.|.+.....                      ...+...+.+++++|
T Consensus        66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  145 (289)
T cd00200          66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP  145 (289)
T ss_pred             EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence            4788999999999999888888888888889888886531110                      113556799999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++.++++++.++.+++||+++++....+..|...+.++.|+|+++.+++++.|+.+++||++++
T Consensus       146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  209 (289)
T cd00200         146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG  209 (289)
T ss_pred             cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence            9999999988999999999988888888888889999999999999999999999999999754

>KOG0283|consensus

Probab=99.77  E-value=4.9e-18  Score=114.21  Aligned_cols=100  Identities=19%  Similarity=0.333  Sum_probs=89.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP-SGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |++++-|.+|++|++....|+..|. |.                    ..|+|++|+| +.++|++|+-|+.+++|++..
T Consensus       383 LLSSSMDKTVRLWh~~~~~CL~~F~-Hn--------------------dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d  441 (712)
T KOG0283|consen  383 LLSSSMDKTVRLWHPGRKECLKVFS-HN--------------------DFVTCVAFNPVDDRYFISGSLDGKVRLWSISD  441 (712)
T ss_pred             eEeccccccEEeecCCCcceeeEEe-cC--------------------CeeEEEEecccCCCcEeecccccceEEeecCc
Confidence            6899999999999999999999998 55                    7999999999 569999999999999999988


Q ss_pred             CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .+.+.-.. -..-|++++|.|||+..+.|+.+|..++|+.+..
T Consensus       442 ~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  442 KKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL  483 (712)
T ss_pred             CeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence            77666554 4478999999999999999999999999987653

>KOG0296|consensus

Probab=99.77  E-value=4.6e-17  Score=101.51  Aligned_cols=123  Identities=19%  Similarity=0.274  Sum_probs=107.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccccc----------------------CCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGT----------------------RQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------------------~~~~~i~~~~~~~   58 (125)
                      ++||+.|....+|++.++..+..+.+|...|.++.|+......+.                      .....+.=+.|+|
T Consensus        79 ~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp  158 (399)
T KOG0296|consen   79 VATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP  158 (399)
T ss_pred             EEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc
Confidence            479999999999999999999999999999999999753322111                      2334566788999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+..++.|+.||.+..|.+.++.....+.+|..++++-.|.|+|+.++++..|++|++||+.++.
T Consensus       159 ~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~  223 (399)
T KOG0296|consen  159 RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ  223 (399)
T ss_pred             cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc
Confidence            99999999999999999999888888899999999999999999999999999999999998874

>KOG0292|consensus

Probab=99.77  E-value=1.1e-17  Score=114.20  Aligned_cols=123  Identities=17%  Similarity=0.296  Sum_probs=104.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcc--ccc-----------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYT--TEA-----------------------------------   43 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~-----------------------------------   43 (125)
                      ++++|.|.+|+|||..+.+++..+.+|..=|++.+|++..  +..                                   
T Consensus       108 IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~  187 (1202)
T KOG0292|consen  108 ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN  187 (1202)
T ss_pred             EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence            5799999999999999999999999999888888886511  000                                   


Q ss_pred             --------------ccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc--eeEEeCCCCCceeEEEEccCCCeEEE
Q psy14458         44 --------------GTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR--PLQTFKPHTADVRSIRFSPSAYYLLT  107 (125)
Q Consensus        44 --------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~  107 (125)
                                    .-+|.-.|+-++|+|.-.++++|++|..|++|.....+  .+-+.++|.+.|.++-|+|...+|++
T Consensus       188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlS  267 (1202)
T KOG0292|consen  188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILS  267 (1202)
T ss_pred             hhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEe
Confidence                          01455688999999999999999999999999876543  45567799999999999999999999


Q ss_pred             eecCCeEEEEeCCCCC
Q psy14458        108 GGYDNKLVLTDLQGTM  123 (125)
Q Consensus       108 ~~~d~~i~~~~~~~~~  123 (125)
                      .++|++|++||+..+.
T Consensus       268 nsEDksirVwDm~kRt  283 (1202)
T KOG0292|consen  268 NSEDKSIRVWDMTKRT  283 (1202)
T ss_pred             cCCCccEEEEeccccc
Confidence            9999999999998764

>KOG0277|consensus

Probab=99.77  E-value=6.3e-18  Score=101.30  Aligned_cols=104  Identities=24%  Similarity=0.389  Sum_probs=87.7

Q ss_pred             CeeecCCCeEEEEECCC-CcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRG-SRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS-GRLMVSGHEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~d~~   78 (125)
                      +++++.||++++||+.. .+++..++.|..                    .|.++.|++. +..+++++-|++|++|+..
T Consensus        76 ~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~--------------------EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~  135 (311)
T KOG0277|consen   76 VIAASGDGSLRLFDLTMPSKPIHKFKEHKR--------------------EVYSVDWNTVRRRIFLTSSWDGTIKLWDPN  135 (311)
T ss_pred             EEEEecCceEEEeccCCCCcchhHHHhhhh--------------------heEEeccccccceeEEeeccCCceEeecCC
Confidence            47899999999999643 357888888884                    4555566654 4567788999999999999


Q ss_pred             CCceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCCCC
Q psy14458         79 GSRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGTMR  124 (125)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~  124 (125)
                      .++.+.+|.+|+.-|....|+| .+..++++|.|+++++||++...+
T Consensus       136 r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk  182 (311)
T KOG0277|consen  136 RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK  182 (311)
T ss_pred             CCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence            9999999999999999999999 678999999999999999986644

>KOG0640|consensus

Probab=99.77  E-value=2e-17  Score=101.85  Aligned_cols=119  Identities=21%  Similarity=0.375  Sum_probs=99.3

Q ss_pred             CeeecCCCeEEEEECCCC------------------cceeeecCCCCCeEEEEecCcccccc------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGS------------------RPLQTFKPHTADVRSIHLDHYTTEAG------------------   44 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~------------------~~~~~~~~~~~~i~~~~~~~~~~~~~------------------   44 (125)
                      ++||+.|.+|+|.|+...                  ..+.++..|..+|+.+.|++......                  
T Consensus       127 vATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa  206 (430)
T KOG0640|consen  127 VATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA  206 (430)
T ss_pred             EEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHH
Confidence            489999999999998721                  23456667889999999987432221                  


Q ss_pred             ------cCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC---CCCCceeEEEEccCCCeEEEeecCCeEE
Q psy14458         45 ------TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK---PHTADVRSIRFSPSAYYLLTGGYDNKLV  115 (125)
Q Consensus        45 ------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~d~~i~  115 (125)
                            .....++.++.|+|.|.+++.|.+...+++||+.+-++..+-.   .|.+.|+++.+++.+++.++++.||.|+
T Consensus       207 KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~Ik  286 (430)
T KOG0640|consen  207 KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIK  286 (430)
T ss_pred             HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEE
Confidence                  1234789999999999999999999999999999988876654   6889999999999999999999999999


Q ss_pred             EEeC
Q psy14458        116 LTDL  119 (125)
Q Consensus       116 ~~~~  119 (125)
                      +||=
T Consensus       287 lwDG  290 (430)
T KOG0640|consen  287 LWDG  290 (430)
T ss_pred             eecc
Confidence            9984

>KOG0640|consensus

Probab=99.76  E-value=4.7e-18  Score=104.58  Aligned_cols=123  Identities=23%  Similarity=0.358  Sum_probs=99.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeee--cCCCCCeEEEEecCcccccc-------------------------cCCCCCeEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTF--KPHTADVRSIHLDHYTTEAG-------------------------TRQGSPVSA   53 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~-------------------------~~~~~~i~~   53 (125)
                      |++|++|+.|++||.........+  -....+++++.|++......                         ..|...|++
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~  266 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQ  266 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeE
Confidence            589999999999998654322222  23566889999876332211                         246688999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC-CCCC-ceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         54 LCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK-PHTA-DVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~-~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.+++.+++.++++.||.|++||--.++++.++. +|.+ .|.+..|..+++++++.+.|..+++|++.++.
T Consensus       267 V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R  338 (430)
T KOG0640|consen  267 VRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR  338 (430)
T ss_pred             EEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence            9999999999999999999999999999998886 5654 68889999999999999999999999998763

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.76  E-value=7.9e-17  Score=99.24  Aligned_cols=117  Identities=27%  Similarity=0.433  Sum_probs=99.2

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcc--cc--------------------cccCCCCCeEEEEECCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYT--TE--------------------AGTRQGSPVSALCVDPS   59 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~--------------------~~~~~~~~i~~~~~~~~   59 (125)
                      ++++.|+.|++||++.++.+..+..+...+.++.|.+..  ..                    ....+...+.+++|+|+
T Consensus       151 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  230 (289)
T cd00200         151 ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD  230 (289)
T ss_pred             EEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCC
Confidence            455669999999999888888888888888888886542  11                    01145568999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      +.++++++.++.+++||..+++....+..|...+.++.|+|++.++++++.|+.+++|+
T Consensus       231 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            88889888899999999999888888888999999999999999999999999999996

>KOG0303|consensus

Probab=99.76  E-value=8.9e-18  Score=105.80  Aligned_cols=102  Identities=22%  Similarity=0.362  Sum_probs=89.6

Q ss_pred             CeeecCCCeEEEEECCCCc-------ceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcE
Q psy14458          1 MVSGHEDSSCVLYDIRGSR-------PLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSC   72 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i   72 (125)
                      +|+|++|.+|+||++..+.       ++..+.+|.                    ..|-.++|+|.. +.|++++.|+.|
T Consensus        97 IASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~--------------------rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   97 IASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ--------------------RRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             eecCCCCceEEEEECCCcccccCcccceEEEeecc--------------------eeEEEEeecccchhhHhhccCCceE
Confidence            6899999999999996543       233444555                    788899999986 888999999999


Q ss_pred             EEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         73 VLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        73 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+|++.+++.+..+. |...|.+++|+.||..+++.+.|+.|++||.+++.
T Consensus       157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~  206 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT  206 (472)
T ss_pred             EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc
Confidence            999999999998888 99999999999999999999999999999998764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.76  E-value=1.5e-16  Score=111.45  Aligned_cols=119  Identities=24%  Similarity=0.295  Sum_probs=96.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCc------------------------ccccccCCCCCeEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHY------------------------TTEAGTRQGSPVSALCV   56 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~------------------------~~~~~~~~~~~i~~~~~   56 (125)
                      |++|+.|+.|++||++++..+..+..+ ..+.++.|...                        .......|...|.++.|
T Consensus       591 L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f  669 (793)
T PLN00181        591 LASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF  669 (793)
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEE
Confidence            579999999999999988887777643 46666666321                        11122457788999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCC------ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         57 DPSGRLMVSGHEDSSCVLYDIRGS------RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        57 ~~~~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      . ++.++++++.|+.|++||++..      ..+..+.+|...+.++.|+|++.+|++|+.|+.+++|+...
T Consensus       670 ~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~  739 (793)
T PLN00181        670 V-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF  739 (793)
T ss_pred             e-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence            7 6789999999999999999743      56778889999999999999999999999999999999754

>KOG0265|consensus

Probab=99.76  E-value=1.8e-17  Score=101.17  Aligned_cols=102  Identities=25%  Similarity=0.323  Sum_probs=87.4

Q ss_pred             CeeecCCCeEEEEECCC-CcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRG-SRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |+||+.|..|.+|++.. -+....+++|.                    ..|..+.|.++++.+++++.|.+++.||..+
T Consensus        62 ~aSgG~Dr~I~LWnv~gdceN~~~lkgHs--------------------gAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   62 FASGGSDRAIVLWNVYGDCENFWVLKGHS--------------------GAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             EeecCCcceEEEEeccccccceeeecccc--------------------ceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            68999999999999643 23355667777                    7889999999999999999999999999999


Q ss_pred             CceeEEeCCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++..+.++.|.+-|+.+.-+.-| .++.+++.|+++++||+|++
T Consensus       122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k  165 (338)
T KOG0265|consen  122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK  165 (338)
T ss_pred             ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence            99999999999999988744333 57788889999999999954

>KOG0285|consensus

Probab=99.76  E-value=9.9e-18  Score=104.64  Aligned_cols=101  Identities=26%  Similarity=0.496  Sum_probs=91.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |+||+.|..+++||+++...+..+.+|.                    .+|..+.+.|....+++|+.|++|++||++.+
T Consensus       250 l~t~grDst~RvWDiRtr~~V~~l~GH~--------------------~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag  309 (460)
T KOG0285|consen  250 LVTGGRDSTIRVWDIRTRASVHVLSGHT--------------------NPVASVMCQPTDPQVITGSHDSTVRLWDLRAG  309 (460)
T ss_pred             EEecCCcceEEEeeecccceEEEecCCC--------------------CcceeEEeecCCCceEEecCCceEEEeeeccC
Confidence            5899999999999999999999999999                    67788888888889999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +....+..|+..|++++.+|....+++++.|. |+-|++..+
T Consensus       310 kt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g  350 (460)
T KOG0285|consen  310 KTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG  350 (460)
T ss_pred             ceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCcc
Confidence            99999999999999999999999999998876 777876543

>KOG0322|consensus

Probab=99.76  E-value=1.4e-17  Score=100.30  Aligned_cols=119  Identities=23%  Similarity=0.374  Sum_probs=97.9

Q ss_pred             CeeecCCCeEEEEECCCC----------cceeeecCCCCCeEEEEecCcccccc--------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGS----------RPLQTFKPHTADVRSIHLDHYTTEAG--------------------------   44 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~~--------------------------   44 (125)
                      |+.|-++|.+.+||+.++          +.......|..++.++.+.......-                          
T Consensus       168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~  247 (323)
T KOG0322|consen  168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI  247 (323)
T ss_pred             EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence            467889999999999887          33333456888999988753111000                          


Q ss_pred             cCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         45 TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        45 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      .-....+..+.+-|+++.+++++-|+.|++|+.++..++..++.|.+.|++++|+|+..++++++.|+.|.+|++
T Consensus       248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            011246778889999999999999999999999999999999999999999999999999999999999999986

>KOG0294|consensus

Probab=99.75  E-value=8.8e-17  Score=98.82  Aligned_cols=121  Identities=20%  Similarity=0.327  Sum_probs=97.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccccc-----------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGT-----------------------------------   45 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------------------------   45 (125)
                      |++|+.||.|.+|+.....++..+++|...|+.+..++.......                                   
T Consensus       100 LlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~  179 (362)
T KOG0294|consen  100 LLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQ  179 (362)
T ss_pred             eeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCC
Confidence            689999999999999999999999999999999998763222111                                   


Q ss_pred             --------------------------CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEE-
Q psy14458         46 --------------------------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRF-   98 (125)
Q Consensus        46 --------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-   98 (125)
                                                .....+.|+.|- ++..+++|.+++.|.+||.....+...+.+|.+.|..+.+ 
T Consensus       180 Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~  258 (362)
T KOG0294|consen  180 GDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASY  258 (362)
T ss_pred             CCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEE
Confidence                                      111234444443 4567888889999999999888999999999999999873 


Q ss_pred             -ccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         99 -SPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        99 -~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                       +|++.+|++++.||.|++||++..
T Consensus       259 ~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  259 TNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ecCCceEEEEeccCceEEEEEcccc
Confidence             668899999999999999998765

>KOG0310|consensus

Probab=99.75  E-value=1e-17  Score=107.36  Aligned_cols=103  Identities=25%  Similarity=0.431  Sum_probs=89.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~   79 (125)
                      |+.|...|.|++||..+...+..++.|+                    .++..+.|+|++ ..+++|++|+.+++||+.+
T Consensus        83 laaGD~sG~V~vfD~k~r~iLR~~~ah~--------------------apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~  142 (487)
T KOG0310|consen   83 LAAGDESGHVKVFDMKSRVILRQLYAHQ--------------------APVHVTKFSPQDNTMLVSGSDDKVVKYWDLST  142 (487)
T ss_pred             EEccCCcCcEEEeccccHHHHHHHhhcc--------------------CceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence            4778888999999976655677788888                    788899999976 6678899999999999999


Q ss_pred             CceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ......+.+|+..|+|.+++| ++.++++|+.||+|++||.++..
T Consensus       143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~  187 (487)
T KOG0310|consen  143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT  187 (487)
T ss_pred             cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC
Confidence            887668889999999999999 56688999999999999998763

>KOG0288|consensus

Probab=99.75  E-value=4.5e-17  Score=102.97  Aligned_cols=116  Identities=20%  Similarity=0.326  Sum_probs=92.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc--------------------------ccccCCCCCeEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT--------------------------EAGTRQGSPVSAL   54 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------------------~~~~~~~~~i~~~   54 (125)
                      +++|+.|++|++||.++..+......+. .|+++.......                          ..........+.+
T Consensus       315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv  393 (459)
T KOG0288|consen  315 VISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV  393 (459)
T ss_pred             eeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence            4689999999999999888777766433 666666432111                          1112344568899


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCC-CC-ceeEEEEccCCCeEEEeecCCeEEEE
Q psy14458         55 CVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPH-TA-DVRSIRFSPSAYYLLTGGYDNKLVLT  117 (125)
Q Consensus        55 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~-~v~~~~~~~~~~~~~~~~~d~~i~~~  117 (125)
                      .|||++.|+++|+.||.|+||++.++++...+... .. .|+++.|+|.|..+++++.++.+++|
T Consensus       394 vfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  394 VFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            99999999999999999999999999887777633 33 69999999999999999999999999

>KOG0308|consensus

Probab=99.75  E-value=1.7e-17  Score=109.72  Aligned_cols=110  Identities=25%  Similarity=0.439  Sum_probs=91.0

Q ss_pred             CeeecCCCeEEEEECCCCcc--eeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRP--LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~   78 (125)
                      +++|+-|+.|.+||+.++..  +..+..  .++.++         ...+...|.+++..+.+..+++|+.++-+++||.+
T Consensus       133 vaSgGLD~~IflWDin~~~~~l~~s~n~--~t~~sl---------~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDpr  201 (735)
T KOG0308|consen  133 VASGGLDRKIFLWDINTGTATLVASFNN--VTVNSL---------GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPR  201 (735)
T ss_pred             EEecCCCccEEEEEccCcchhhhhhccc--cccccC---------CCCCccceeeeecCCcceEEEecCcccceEEeccc
Confidence            48999999999999998743  222221  001000         01344889999999999999999999999999999


Q ss_pred             CCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         79 GSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      +.+.+-.+++|...|+.+..++||..+++++.||+|++||+..
T Consensus       202 t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq  244 (735)
T KOG0308|consen  202 TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ  244 (735)
T ss_pred             cccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence            9999888999999999999999999999999999999999964

>KOG0282|consensus

Probab=99.75  E-value=8.4e-18  Score=107.79  Aligned_cols=101  Identities=17%  Similarity=0.285  Sum_probs=93.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~   79 (125)
                      |++++.|+.+++||+++|+++..|...                     ..++|+.++|++ +.++.|..|+.|+.||+++
T Consensus       273 fLS~sfD~~lKlwDtETG~~~~~f~~~---------------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs  331 (503)
T KOG0282|consen  273 FLSASFDRFLKLWDTETGQVLSRFHLD---------------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS  331 (503)
T ss_pred             eeeeecceeeeeeccccceEEEEEecC---------------------CCceeeecCCCCCcEEEEecCCCcEEEEeccc
Confidence            589999999999999999999988743                     578999999998 8899999999999999999


Q ss_pred             CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++.+.++..|-+.|..+.|-++++.+++.+.|+.+++|+.+..
T Consensus       332 ~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~  374 (503)
T KOG0282|consen  332 GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP  374 (503)
T ss_pred             hHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence            9999999989999999999999999999999999999998754

>KOG0313|consensus

Probab=99.74  E-value=1.6e-16  Score=99.59  Aligned_cols=121  Identities=22%  Similarity=0.370  Sum_probs=101.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc-----------------------------ccccCCCCCe
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT-----------------------------EAGTRQGSPV   51 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------------------------~~~~~~~~~i   51 (125)
                      ++||++||.+++||. .|+....+.+|.++|.++.|.....                             ....+|...|
T Consensus       118 IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V  196 (423)
T KOG0313|consen  118 ILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSV  196 (423)
T ss_pred             EEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccce
Confidence            589999999999996 5899999999999999888743211                             1113788999


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcC-------------------------CCceeEEeCCCCCceeEEEEccCCCeEE
Q psy14458         52 SALCVDPSGRLMVSGHEDSSCVLYDIR-------------------------GSRPLQTFKPHTADVRSIRFSPSAYYLL  106 (125)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~i~~~d~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~  106 (125)
                      .++...+++..+++|+.|..|++|+..                         ++.++..+.+|..+|.++.|++ ...+.
T Consensus       197 ~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~y  275 (423)
T KOG0313|consen  197 DSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIY  275 (423)
T ss_pred             eEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceE
Confidence            999999999999999999999999932                         1245677889999999999987 67899


Q ss_pred             EeecCCeEEEEeCCCCC
Q psy14458        107 TGGYDNKLVLTDLQGTM  123 (125)
Q Consensus       107 ~~~~d~~i~~~~~~~~~  123 (125)
                      +++-|-+|+.||+.++.
T Consensus       276 S~SwDHTIk~WDletg~  292 (423)
T KOG0313|consen  276 SVSWDHTIKVWDLETGG  292 (423)
T ss_pred             eecccceEEEEEeeccc
Confidence            99999999999998764

>KOG0318|consensus

Probab=99.74  E-value=1e-16  Score=104.02  Aligned_cols=103  Identities=17%  Similarity=0.333  Sum_probs=85.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeec---CCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFK---PHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDI   77 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~   77 (125)
                      |+|.+.|++|.+||-.+++.+..+.   +|.                    ..|..++|+|++..+++++.|.++++||+
T Consensus       205 Fat~gsDgki~iyDGktge~vg~l~~~~aHk--------------------GsIfalsWsPDs~~~~T~SaDkt~KIWdV  264 (603)
T KOG0318|consen  205 FATAGSDGKIYIYDGKTGEKVGELEDSDAHK--------------------GSIFALSWSPDSTQFLTVSADKTIKIWDV  264 (603)
T ss_pred             EEEecCCccEEEEcCCCccEEEEecCCCCcc--------------------ccEEEEEECCCCceEEEecCCceEEEEEe
Confidence            5899999999999999999988887   455                    66777777777777777777777777777


Q ss_pred             CC-------------------------------------------CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeE
Q psy14458         78 RG-------------------------------------------SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKL  114 (125)
Q Consensus        78 ~~-------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i  114 (125)
                      .+                                           ...+..+.+|...|+++..+|++++|++|++||.|
T Consensus       265 s~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I  344 (603)
T KOG0318|consen  265 STNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHI  344 (603)
T ss_pred             eccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceE
Confidence            53                                           33445556789999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy14458        115 VLTDLQGTM  123 (125)
Q Consensus       115 ~~~~~~~~~  123 (125)
                      .-|+..++.
T Consensus       345 ~~W~~~~g~  353 (603)
T KOG0318|consen  345 NSWDSGSGT  353 (603)
T ss_pred             EEEecCCcc
Confidence            999987764

>KOG1034|consensus

Probab=99.74  E-value=2.6e-17  Score=101.60  Aligned_cols=101  Identities=21%  Similarity=0.321  Sum_probs=89.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~   79 (125)
                      ++.++.-|.|+|.|+.++++...+.+|.                    ..|+.+.++|.. +++++++.|..|++|++++
T Consensus       108 la~~G~~GvIrVid~~~~~~~~~~~ghG--------------------~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen  108 LAAGGYLGVIRVIDVVSGQCSKNYRGHG--------------------GSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             EEeecceeEEEEEecchhhhccceeccC--------------------ccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            3567778888888888888888888777                    778888889976 7889999999999999999


Q ss_pred             CceeEEeC---CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         80 SRPLQTFK---PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        80 ~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ..++..|-   +|...|.++.|+++|..|++++.|-.+.+|++..
T Consensus       168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence            99888775   7999999999999999999999999999999974

>KOG0274|consensus

Probab=99.73  E-value=5.9e-17  Score=108.39  Aligned_cols=119  Identities=24%  Similarity=0.383  Sum_probs=102.4

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc--------------------ccccCCCCCeEEEEECCCCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT--------------------EAGTRQGSPVSALCVDPSGR   61 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~i~~~~~~~~~~   61 (125)
                      ++|+.|.+|++|++.+++++..+.+|..+|+++..+....                    .....|...|.++.+.+. +
T Consensus       305 ~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~  383 (537)
T KOG0274|consen  305 VSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-N  383 (537)
T ss_pred             eeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-c
Confidence            5678999999999999999999999999999998764222                    223478899999988766 8


Q ss_pred             EEEEEeCCCcEEEEEcCCC-ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         62 LMVSGHEDSSCVLYDIRGS-RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        62 ~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+++|+.|++|++||+.+. +++..+..|..-|..+.+  .++++++++.|++|++||..++.
T Consensus       384 ~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  384 RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             eEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCc
Confidence            9999999999999999999 999999999998877665  78899999999999999987653

>KOG0275|consensus

Probab=99.73  E-value=3.8e-18  Score=105.73  Aligned_cols=111  Identities=18%  Similarity=0.321  Sum_probs=93.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++|+-||.|.+||..+|+...-++-...            ....-....+.|++|+.+.+++++|+.||.|++|.+.++
T Consensus       228 LvsgSvDGFiEVWny~~GKlrKDLkYQAq------------d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG  295 (508)
T KOG0275|consen  228 LVSGSVDGFIEVWNYTTGKLRKDLKYQAQ------------DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG  295 (508)
T ss_pred             Eeeccccceeeeehhccchhhhhhhhhhh------------cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc
Confidence            58999999999999999876544331100            000012278999999999999999999999999999999


Q ss_pred             ceeEEeC-CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 RPLQTFK-PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +++..|. +|...|.|+.|+.|+..+++++.|.++++..+.++.
T Consensus       296 ~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK  339 (508)
T KOG0275|consen  296 QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK  339 (508)
T ss_pred             hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch
Confidence            9999997 899999999999999999999999999999987763

>KOG1446|consensus

Probab=99.73  E-value=6.7e-16  Score=94.65  Aligned_cols=120  Identities=18%  Similarity=0.231  Sum_probs=96.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEec------------------------CcccccccCCCCCeEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLD------------------------HYTTEAGTRQGSPVSALCV   56 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~------------------------~~~~~~~~~~~~~i~~~~~   56 (125)
                      |++++.|-++++||..+++++..+..+...+..++|.                        ...+....+|...|..+++
T Consensus        29 litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~  108 (311)
T KOG1446|consen   29 LITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSV  108 (311)
T ss_pred             EEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEe
Confidence            4678999999999999998887776554444444432                        2334455689999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         57 DPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        57 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +|-++.+++++.|++|++||++..++...+.....+  ..+|.|+|-++|.+...+.|++||+|+-
T Consensus       109 sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~  172 (311)
T KOG1446|consen  109 SPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSF  172 (311)
T ss_pred             cCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEeccc
Confidence            999999999999999999999988777666533333  4789999999999999889999999865

>KOG0300|consensus

Probab=99.72  E-value=5e-17  Score=100.56  Aligned_cols=104  Identities=25%  Similarity=0.451  Sum_probs=93.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      ++++++|.+..+||++++..++.+.+|.                    ..++-++-+|.+.++++.+.|.+.++||.+..
T Consensus       287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd--------------------~ELtHcstHptQrLVvTsSrDtTFRLWDFRea  346 (481)
T KOG0300|consen  287 MVTASWDRTANLWDVETGEVVNILTGHD--------------------SELTHCSTHPTQRLVVTSSRDTTFRLWDFREA  346 (481)
T ss_pred             eeeeeccccceeeeeccCceeccccCcc--------------------hhccccccCCcceEEEEeccCceeEeccchhh
Confidence            4789999999999999999999999998                    77788889999999999999999999999864


Q ss_pred             -ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCCC
Q psy14458         81 -RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        81 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                       +.+..|.+|...|+++.|.-+ ..+++|+.|.++++||+++...|
T Consensus       347 I~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsp  391 (481)
T KOG0300|consen  347 IQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSP  391 (481)
T ss_pred             cceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCc
Confidence             567789999999999999865 46899999999999999987654

>KOG1445|consensus

Probab=99.72  E-value=2.6e-17  Score=109.43  Aligned_cols=105  Identities=17%  Similarity=0.287  Sum_probs=91.6

Q ss_pred             CeeecCCCeEEEEECCCCcc-------eeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC-CCEEEEEeCCCcE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRP-------LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS-GRLMVSGHEDSSC   72 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i   72 (125)
                      |+.+++|+.|++|.+..+..       ...+..|.                    ..|+++.|+|= .+.+++++.|-+|
T Consensus       643 LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~--------------------eKI~slRfHPLAadvLa~asyd~Ti  702 (1012)
T KOG1445|consen  643 LAVATDDGQINLWRLTANGLPENEMTPEKILTIHG--------------------EKITSLRFHPLAADVLAVASYDSTI  702 (1012)
T ss_pred             eeecccCceEEEEEeccCCCCcccCCcceeeeccc--------------------ceEEEEEecchhhhHhhhhhcccee
Confidence            67899999999999876532       33344444                    88999999995 4789999999999


Q ss_pred             EEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCCC
Q psy14458         73 VLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        73 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      ++||+++++....+.+|.+.|..++|+|||+.+++.+.||++++|+.+++..|
T Consensus       703 ~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p  755 (1012)
T KOG1445|consen  703 ELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP  755 (1012)
T ss_pred             eeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence            99999999998899999999999999999999999999999999999988765

>KOG0310|consensus

Probab=99.71  E-value=3e-16  Score=100.79  Aligned_cols=101  Identities=24%  Similarity=0.336  Sum_probs=87.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS-GRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |++|+.|+.+++||+.+......+.+|+                    +-|.|.+++|. +..+++|+-||.|++||++.
T Consensus       126 l~s~sDd~v~k~~d~s~a~v~~~l~~ht--------------------DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~  185 (487)
T KOG0310|consen  126 LVSGSDDKVVKYWDLSTAYVQAELSGHT--------------------DYVRCGDISPANDHIVVTGSYDGKVRLWDTRS  185 (487)
T ss_pred             EEecCCCceEEEEEcCCcEEEEEecCCc--------------------ceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence            5789999999999998877655677888                    88899999996 46899999999999999998


Q ss_pred             C-ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         80 S-RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        80 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      . ..+.++. |..+|-.+.+-|.|..|+++++ ..+++||+-++.
T Consensus       186 ~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~  228 (487)
T KOG0310|consen  186 LTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG  228 (487)
T ss_pred             CCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc
Confidence            7 6777777 9999999999999999998865 569999998553

>KOG0296|consensus

Probab=99.71  E-value=2.7e-16  Score=98.16  Aligned_cols=98  Identities=17%  Similarity=0.257  Sum_probs=88.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      +|.|+-||+|.|||+...+....+. |.                    ..|..+.|-+ -.++++++.+|.|+.||.+++
T Consensus       301 ~A~G~vdG~i~iyD~a~~~~R~~c~-he--------------------~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG  358 (399)
T KOG0296|consen  301 AACGSVDGTIAIYDLAASTLRHICE-HE--------------------DGVTKLKWLN-TDYLLTACANGKVRQWDARTG  358 (399)
T ss_pred             hhcccccceEEEEecccchhheecc-CC--------------------CceEEEEEcC-cchheeeccCceEEeeecccc
Confidence            3789999999999998777655554 55                    6788889988 788999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ++...+.+|...|.++.++|+.++++++|.|++.+++++.
T Consensus       359 ~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  359 QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9999999999999999999999999999999999999875

>KOG0645|consensus

Probab=99.71  E-value=1.6e-15  Score=91.66  Aligned_cols=120  Identities=18%  Similarity=0.223  Sum_probs=103.5

Q ss_pred             CeeecCCCeEEEEECCCC--cceeeecCCCCCeEEEEecCccc-------------------------ccccCCCCCeEE
Q psy14458          1 MVSGHEDSSCVLYDIRGS--RPLQTFKPHTADVRSIHLDHYTT-------------------------EAGTRQGSPVSA   53 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~-------------------------~~~~~~~~~i~~   53 (125)
                      |++++.|.++.||.-..+  +++..+.+|..+|.++.|+....                         ...+.|..-|-.
T Consensus        76 La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~  155 (312)
T KOG0645|consen   76 LASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH  155 (312)
T ss_pred             EEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence            589999999999986543  67888999999999999975332                         222477788999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCC---CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         54 LCVDPSGRLMVSGHEDSSCVLYDIRG---SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      +.|+|...+|++++.|++|++|.-..   -++...+.+|.+.|.++.|++.|..+++++.|+++++|-+.
T Consensus       156 V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  156 VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            99999999999999999999998763   35788899999999999999999999999999999999743

>KOG1036|consensus

Probab=99.71  E-value=9.1e-16  Score=93.96  Aligned_cols=120  Identities=20%  Similarity=0.243  Sum_probs=97.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecC--------------------cccccccCCCCCeEEEEECCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH--------------------YTTEAGTRQGSPVSALCVDPSG   60 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~--------------------~~~~~~~~~~~~i~~~~~~~~~   60 (125)
                      |+.+++||++++||+........++ +..|+.+++|.+                    ....+...|...+.|+..++..
T Consensus        28 LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~  106 (323)
T KOG1036|consen   28 LLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEV  106 (323)
T ss_pred             EEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccC
Confidence            5778899999999998776555555 777888877754                    2233334788999999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCC
Q psy14458         61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMR  124 (125)
Q Consensus        61 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  124 (125)
                      ..+++|+.|++|++||.+.......+. ..++|.++..  .+..|+.|+.|..+.+||+++...
T Consensus       107 ~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~  167 (323)
T KOG1036|consen  107 GCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDE  167 (323)
T ss_pred             CeEEEcccCccEEEEeccccccccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccc
Confidence            999999999999999999866666666 4457888877  677899999999999999997654

>KOG0293|consensus

Probab=99.70  E-value=8.2e-17  Score=102.10  Aligned_cols=102  Identities=15%  Similarity=0.310  Sum_probs=84.0

Q ss_pred             eecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          3 SGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP-SGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         3 t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      +.-.+..+++||+...+.+..+.+|...                  ..+-.-||-- +..++++|++|+.|+||+..+++
T Consensus       412 vnL~~qei~LWDl~e~~lv~kY~Ghkq~------------------~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk  473 (519)
T KOG0293|consen  412 VNLQDQEIHLWDLEENKLVRKYFGHKQG------------------HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK  473 (519)
T ss_pred             EEcccCeeEEeecchhhHHHHhhccccc------------------ceEEEeccCCCCcceEEecCCCceEEEEEccCCc
Confidence            3345778999999988888888887632                  2333344543 34789999999999999999999


Q ss_pred             eeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCC
Q psy14458         82 PLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++..+.+|...|+|++|+| +...+|+++.||+|++|.....
T Consensus       474 ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  474 LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            9999999999999999999 6789999999999999987643

>KOG0639|consensus

Probab=99.70  E-value=5.2e-17  Score=105.35  Aligned_cols=105  Identities=23%  Similarity=0.392  Sum_probs=90.7

Q ss_pred             CeeecCCCeEEEEECCCCccee--eecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQ--TFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~   78 (125)
                      |++|++-.++.|||+....+..  .+....                    .....++.+|+.++.++++.||.|.|||++
T Consensus       480 LivGGeastlsiWDLAapTprikaeltssa--------------------paCyALa~spDakvcFsccsdGnI~vwDLh  539 (705)
T KOG0639|consen  480 LIVGGEASTLSIWDLAAPTPRIKAELTSSA--------------------PACYALAISPDAKVCFSCCSDGNIAVWDLH  539 (705)
T ss_pred             EEeccccceeeeeeccCCCcchhhhcCCcc--------------------hhhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence            5789999999999998655422  222111                    456788999999999999999999999999


Q ss_pred             CCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCCC
Q psy14458         79 GSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      +...+..|.+|...+.||..++||.-|.+|+.|.+++.||++.++++
T Consensus       540 nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql  586 (705)
T KOG0639|consen  540 NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL  586 (705)
T ss_pred             cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence            99999999999999999999999999999999999999999988753

>KOG0268|consensus

Probab=99.69  E-value=1.8e-16  Score=99.09  Aligned_cols=124  Identities=25%  Similarity=0.414  Sum_probs=99.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccccc-----------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGT-----------------------------------   45 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------------------------   45 (125)
                      +++|+.||.|++||+..-.++..|+.|.+.|+.++++...+....                                   
T Consensus        82 ~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~  161 (433)
T KOG0268|consen   82 VASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSV  161 (433)
T ss_pred             hhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeecccccccccccccccc
Confidence            589999999999999999999999999999998886431110000                                   


Q ss_pred             -----------------------CCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccC
Q psy14458         46 -----------------------RQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPS  101 (125)
Q Consensus        46 -----------------------~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~  101 (125)
                                             --...|.++.|+|.. ..|+++..|+.|.+||.++..++.... ....-+.++|+|+
T Consensus       162 FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPe  240 (433)
T KOG0268|consen  162 FATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPE  240 (433)
T ss_pred             ccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCcc
Confidence                                   001568899999976 566777799999999999998877665 3445568999999


Q ss_pred             CCeEEEeecCCeEEEEeCCCCCCC
Q psy14458        102 AYYLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus       102 ~~~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      +..++++++|..++.+|++....|
T Consensus       241 afnF~~a~ED~nlY~~DmR~l~~p  264 (433)
T KOG0268|consen  241 AFNFVAANEDHNLYTYDMRNLSRP  264 (433)
T ss_pred             ccceeeccccccceehhhhhhccc
Confidence            999999999999999999877655

>KOG4283|consensus

Probab=99.69  E-value=4.4e-16  Score=95.41  Aligned_cols=101  Identities=25%  Similarity=0.327  Sum_probs=86.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC---CCEEEEEeCCCcEEEEEc
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS---GRLMVSGHEDSSCVLYDI   77 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~d~   77 (125)
                      |.+++-|.+++|||..+.+....|+ .+                    ..|.+-+|+|-   -.++++|..+-.|++.|+
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~~F~-me--------------------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi  175 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAVDFK-ME--------------------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI  175 (397)
T ss_pred             eecccccceEEEeecccceeeEEee-cC--------------------ceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence            4688999999999999888777766 33                    57778888884   357888989999999999


Q ss_pred             CCCceeEEeCCCCCceeEEEEccCCC-eEEEeecCCeEEEEeCCCC
Q psy14458         78 RGSRPLQTFKPHTADVRSIRFSPSAY-YLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~  122 (125)
                      ..+...+.+.+|.+.|.++.|+|..+ .|++|+.||.+++||++..
T Consensus       176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra  221 (397)
T KOG4283|consen  176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA  221 (397)
T ss_pred             cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc
Confidence            99999999999999999999999654 5688999999999999864

>KOG0300|consensus

Probab=99.68  E-value=4e-16  Score=96.59  Aligned_cols=121  Identities=20%  Similarity=0.266  Sum_probs=105.3

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc-------------------------------------
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG-------------------------------------   44 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------------------------------------   44 (125)
                      .+++.|.+.++|.+++++|+..+.+|.+.|+++.|++......                                     
T Consensus       164 gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s  243 (481)
T KOG0300|consen  164 GTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS  243 (481)
T ss_pred             eecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc
Confidence            5789999999999999999999999999999999864211100                                     


Q ss_pred             -------------------------cCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEc
Q psy14458         45 -------------------------TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS   99 (125)
Q Consensus        45 -------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~   99 (125)
                                               ..|...+.+..|-..+..+++++-|.+..+||+.+++.+..+.+|....++.+-+
T Consensus       244 De~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstH  323 (481)
T KOG0300|consen  244 DEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTH  323 (481)
T ss_pred             cccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccC
Confidence                                     1334567777888889999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeecCCeEEEEeCCCC
Q psy14458        100 PSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus       100 ~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      |..+++++.+.|.+.++||++..
T Consensus       324 ptQrLVvTsSrDtTFRLWDFRea  346 (481)
T KOG0300|consen  324 PTQRLVVTSSRDTTFRLWDFREA  346 (481)
T ss_pred             CcceEEEEeccCceeEeccchhh
Confidence            99999999999999999999743

>KOG0289|consensus

Probab=99.68  E-value=2.9e-15  Score=95.59  Aligned_cols=123  Identities=24%  Similarity=0.424  Sum_probs=105.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccc----------------------ccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEA----------------------GTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------------------~~~~~~~i~~~~~~~   58 (125)
                      +++|+.|..+.++|..+++.+..+.+|...|..+.+++.....                      ...|..+|+.+..+|
T Consensus       234 ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~  313 (506)
T KOG0289|consen  234 ILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP  313 (506)
T ss_pred             ceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc
Confidence            4789999999999999999999999999999999987633211                      135678899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCC--CCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPH--TADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ++.||+++++|++.-+.|.+++..+......  .-.+++..|+|||.++.+|..|+.+++||+.+..
T Consensus       314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~  380 (506)
T KOG0289|consen  314 TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT  380 (506)
T ss_pred             CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence            9999999999999999999999877766532  2347899999999999999999999999997653

>KOG0267|consensus

Probab=99.68  E-value=2.5e-16  Score=105.44  Aligned_cols=122  Identities=26%  Similarity=0.436  Sum_probs=106.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccc----------------------cccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTE----------------------AGTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------------~~~~~~~~i~~~~~~~   58 (125)
                      +++|++|.++-+|.......+..+.+|..+|.++.++.....                      .+..|...+..+.|+|
T Consensus        43 ~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P  122 (825)
T KOG0267|consen   43 LVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP  122 (825)
T ss_pred             eccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc
Confidence            468999999999998777777778999999999999753221                      1235667899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .+.+++.|+.|+-+++||.+..-+.+.+.+|...|..+.|+|+|+++++++.|.++++||+..+
T Consensus       123 ~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag  186 (825)
T KOG0267|consen  123 YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG  186 (825)
T ss_pred             ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc
Confidence            9999999999999999999988889999999999999999999999999999999999999654

>KOG4283|consensus

Probab=99.68  E-value=6.7e-16  Score=94.63  Aligned_cols=103  Identities=25%  Similarity=0.391  Sum_probs=88.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCE-EEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRL-MVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~i~~~d~~~   79 (125)
                      +|+|..|-+|++.|+.+|.....+.+|.                    ..|.++.|+|..++ |++|+.||.|++||++.
T Consensus       161 iA~gtr~~~VrLCDi~SGs~sH~LsGHr--------------------~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr  220 (397)
T KOG4283|consen  161 IAAGTRDVQVRLCDIASGSFSHTLSGHR--------------------DGVLAVEWSPSSEWVLATGSADGAIRLWDIRR  220 (397)
T ss_pred             EEEecCCCcEEEEeccCCcceeeecccc--------------------CceEEEEeccCceeEEEecCCCceEEEEEeec
Confidence            4788999999999999999999999999                    78888899998765 68999999999999975


Q ss_pred             C-ce--------------eEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         80 S-RP--------------LQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        80 ~-~~--------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      - .+              +..-.+|.+.|+.++|..++.++++++.|..+++|++.++.
T Consensus       221 asgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  221 ASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            2 11              11223578899999999999999999999999999998764

>KOG0268|consensus

Probab=99.68  E-value=3.4e-16  Score=97.89  Aligned_cols=120  Identities=23%  Similarity=0.356  Sum_probs=91.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccc-----------------------cccCCCCCeEEEEEC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTE-----------------------AGTRQGSPVSALCVD   57 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~   57 (125)
                      |++++.|+.|.+||++..+++..+. -...-+.++|++....                       ....|.+.+.+++|+
T Consensus       203 Las~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs  281 (433)
T KOG0268|consen  203 LASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS  281 (433)
T ss_pred             eeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence            5788899999999999998876543 2223356677662211                       113667899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCceeEEeC-CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         58 PSGRLMVSGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        58 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      |.|..+++|+-|.+|+||..+.+..-..+. ..-+.|.|+.|+.|.+++++||.|+.|++|--..
T Consensus       282 ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  282 PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence            999999999999999999987764332221 1234689999999999999999999999996543

>KOG1332|consensus

Probab=99.67  E-value=2.8e-15  Score=89.66  Aligned_cols=122  Identities=17%  Similarity=0.325  Sum_probs=98.4

Q ss_pred             CeeecCCCeEEEEECCCCc---ceeeecCCCCCeEEEEecCccc--------------------------ccccCCCCCe
Q psy14458          1 MVSGHEDSSCVLYDIRGSR---PLQTFKPHTADVRSIHLDHYTT--------------------------EAGTRQGSPV   51 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~--------------------------~~~~~~~~~i   51 (125)
                      |+|++.|++|+||..+.+.   ++..+.+|.+|+..+.|.....                          .....|...+
T Consensus        26 lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SV  105 (299)
T KOG1332|consen   26 LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASV  105 (299)
T ss_pred             eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccc
Confidence            6899999999999998754   5678899999999999864221                          1113677899


Q ss_pred             EEEEECCC--CCEEEEEeCCCcEEEEEcCCC-c--eeEEeCCCCCceeEEEEccC---C-----------CeEEEeecCC
Q psy14458         52 SALCVDPS--GRLMVSGHEDSSCVLYDIRGS-R--PLQTFKPHTADVRSIRFSPS---A-----------YYLLTGGYDN  112 (125)
Q Consensus        52 ~~~~~~~~--~~~~~~~~~~~~i~~~d~~~~-~--~~~~~~~~~~~v~~~~~~~~---~-----------~~~~~~~~d~  112 (125)
                      ++++|-|+  +-.|++++.||.|.+.+.+.. .  .......|.-.|++++|.|-   |           +-|++|+.|.
T Consensus       106 NsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn  185 (299)
T KOG1332|consen  106 NSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDN  185 (299)
T ss_pred             eeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcc
Confidence            99999997  478899999999999998764 2  23334579999999999994   4           5699999999


Q ss_pred             eEEEEeCCCC
Q psy14458        113 KLVLTDLQGT  122 (125)
Q Consensus       113 ~i~~~~~~~~  122 (125)
                      .+++|...++
T Consensus       186 ~VkiW~~~~~  195 (299)
T KOG1332|consen  186 LVKIWKFDSD  195 (299)
T ss_pred             ceeeeecCCc
Confidence            9999998764

>KOG0293|consensus

Probab=99.67  E-value=7.6e-16  Score=97.80  Aligned_cols=102  Identities=22%  Similarity=0.369  Sum_probs=89.0

Q ss_pred             CeeecCCCeEEEEECCCCcc---eeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q psy14458          1 MVSGHEDSSCVLYDIRGSRP---LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDI   77 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~   77 (125)
                      |||++.|.+..+|++.....   ..++.+|.                    .+|.-+.|||+.+++++++.+..+.+||+
T Consensus       239 LAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~--------------------~~V~yi~wSPDdryLlaCg~~e~~~lwDv  298 (519)
T KOG0293|consen  239 LASASKDSTAIIWIVVYDVHFKLKKTLVGHS--------------------QPVSYIMWSPDDRYLLACGFDEVLSLWDV  298 (519)
T ss_pred             EeeccCCceEEEEEEecCcceeeeeeeeccc--------------------CceEEEEECCCCCeEEecCchHheeeccC
Confidence            68999999999999866544   45566676                    78899999999999999999999999999


Q ss_pred             CCCceeEEeC-CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         78 RGSRPLQTFK-PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        78 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .++.....+. ++...+.+.+|.|||..+++|+.|+++..||+...
T Consensus       299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn  344 (519)
T KOG0293|consen  299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN  344 (519)
T ss_pred             CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc
Confidence            9999888776 34578899999999999999999999999998764

>KOG2110|consensus

Probab=99.67  E-value=4.8e-15  Score=92.77  Aligned_cols=96  Identities=22%  Similarity=0.481  Sum_probs=85.8

Q ss_pred             CCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCc-EEEEEcCCCceeEE
Q psy14458          7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSS-CVLYDIRGSRPLQT   85 (125)
Q Consensus         7 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~~~   85 (125)
                      -|.|.+||+.+.++...+..|.                    ..+.+++|+++|.+++++++.|+ |||+.+.+++.+.+
T Consensus       152 ~GdV~l~d~~nl~~v~~I~aH~--------------------~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e  211 (391)
T KOG2110|consen  152 SGDVVLFDTINLQPVNTINAHK--------------------GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE  211 (391)
T ss_pred             CceEEEEEcccceeeeEEEecC--------------------CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence            5789999999999998888888                    78899999999999999999999 79999999999999


Q ss_pred             eCCC--CCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         86 FKPH--TADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        86 ~~~~--~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      |+.-  ...+.+++|+|++++|++.+..++|+++-+...
T Consensus       212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            9833  235678999999999999999999999988654

>KOG1408|consensus

Probab=99.66  E-value=1.4e-15  Score=102.38  Aligned_cols=104  Identities=17%  Similarity=0.305  Sum_probs=94.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      ++++++|..|+|||+.++++...|++..+                 +....-.+.+.|.+.|+++.+.|.++.++|..++
T Consensus       611 v~t~cQDrnirif~i~sgKq~k~FKgs~~-----------------~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg  673 (1080)
T KOG1408|consen  611 VVTVCQDRNIRIFDIESGKQVKSFKGSRD-----------------HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG  673 (1080)
T ss_pred             EEEEecccceEEEeccccceeeeeccccc-----------------CCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence            47899999999999999999999987542                 2255667889999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      +++..+.+|...|+.+.|.+|.++|++.++||.|.+|.+..
T Consensus       674 EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  674 ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            99999999999999999999999999999999999998753

>KOG0306|consensus

Probab=99.66  E-value=8.1e-16  Score=103.50  Aligned_cols=102  Identities=23%  Similarity=0.411  Sum_probs=94.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      ||.|-.||.|++|++.+......+.+|.                    ..|+++.|+..|..+++|+.|+.|-+||+-..
T Consensus        80 lAVGYaDGsVqif~~~s~~~~~tfngHK--------------------~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E  139 (888)
T KOG0306|consen   80 LAVGYADGSVQIFSLESEEILITFNGHK--------------------AAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE  139 (888)
T ss_pred             EEEEecCceEEeeccCCCceeeeecccc--------------------cceEEEEEcccCceEeecCCCccEEEEEeccc
Confidence            4789999999999999888888899988                    78899999999999999999999999999988


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .-...+++|+..|+..-|..+.+++++.|.|+.|++||+.+-
T Consensus       140 ~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq  181 (888)
T KOG0306|consen  140 EGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ  181 (888)
T ss_pred             eeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccc
Confidence            888889999999999888887899999999999999999764

>KOG2111|consensus

Probab=99.66  E-value=1.6e-14  Score=89.10  Aligned_cols=78  Identities=21%  Similarity=0.389  Sum_probs=71.0

Q ss_pred             cCCCCCeEEEEECCCCCEEEEEeCCCc-EEEEEcCCCceeEEeC--CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         45 TRQGSPVSALCVDPSGRLMVSGHEDSS-CVLYDIRGSRPLQTFK--PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        45 ~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      .+|...|.|++++.+|.++++++..|+ |+|||..+++.+.+++  .....+.+++|+|+..+++++|..|+++++.++.
T Consensus       178 ~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  178 NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            378899999999999999999999999 8999999999999987  3446799999999999999999999999999875


Q ss_pred             C
Q psy14458        122 T  122 (125)
Q Consensus       122 ~  122 (125)
                      .
T Consensus       258 ~  258 (346)
T KOG2111|consen  258 T  258 (346)
T ss_pred             C
Confidence            3

>KOG0306|consensus

Probab=99.66  E-value=6.6e-16  Score=103.90  Aligned_cols=101  Identities=17%  Similarity=0.300  Sum_probs=95.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      ++||+.|..|++|-++-|.|...+-+|.                    +.|.++.|-|...++++++.|+.++-||...-
T Consensus       565 ivTgSADKnVKiWGLdFGDCHKS~fAHd--------------------DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF  624 (888)
T KOG0306|consen  565 IVTGSADKNVKIWGLDFGDCHKSFFAHD--------------------DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF  624 (888)
T ss_pred             EEeccCCCceEEeccccchhhhhhhccc--------------------CceeEEEEcccceeEEEecCcceEEeechhhh
Confidence            5899999999999999999999888888                    78899999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      +.++.+.+|...|+|++..|+|.+++++|+|..|++|....
T Consensus       625 e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  625 EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             hhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            99999999999999999999999999999999999998654

>KOG0308|consensus

Probab=99.66  E-value=1.8e-15  Score=100.45  Aligned_cols=102  Identities=29%  Similarity=0.461  Sum_probs=96.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++|+..+-+++||.++.+.+..+++|+                    ..|.++..+++|..+++++.||+|++||+...
T Consensus       186 ivsGgtek~lr~wDprt~~kimkLrGHT--------------------dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ  245 (735)
T KOG0308|consen  186 IVSGGTEKDLRLWDPRTCKKIMKLRGHT--------------------DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ  245 (735)
T ss_pred             EEecCcccceEEeccccccceeeeeccc--------------------cceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence            4789999999999999999999999999                    78889999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +++.++..|+..|+++..+|+=.++.+|+.|+.|..=|+++.
T Consensus       246 rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  246 RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            999999999999999999999999999999999999999874

>KOG0269|consensus

Probab=99.66  E-value=6.4e-16  Score=104.07  Aligned_cols=103  Identities=19%  Similarity=0.389  Sum_probs=90.7

Q ss_pred             CeeecCCCeEEEEECCC---CcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRG---SRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYD   76 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d   76 (125)
                      |+|++..|.|.+||+..   .+.+..|..|.                    -.+++++|++.. +++++|++||.|++||
T Consensus       103 IAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~--------------------Rs~~~ldfh~tep~iliSGSQDg~vK~~D  162 (839)
T KOG0269|consen  103 IATCSTNGVISVWDLNKSIRNKLLTVFNEHE--------------------RSANKLDFHSTEPNILISGSQDGTVKCWD  162 (839)
T ss_pred             heeecCCCcEEEEecCccccchhhhHhhhhc--------------------cceeeeeeccCCccEEEecCCCceEEEEe
Confidence            68999999999999976   56777888888                    677888888864 7899999999999999


Q ss_pred             cCCCceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCCC
Q psy14458         77 IRGSRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ++..+...++......|+.+.|+| .+..++++...|.+.+||+|...
T Consensus       163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~  210 (839)
T KOG0269|consen  163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD  210 (839)
T ss_pred             eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch
Confidence            999988888888888899999999 67899999999999999998653

>KOG0973|consensus

Probab=99.66  E-value=1.5e-15  Score=104.86  Aligned_cols=117  Identities=17%  Similarity=0.218  Sum_probs=88.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCC-CeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTA-DVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      ||+|++|+.|.||..... .....-+.++ ....=.|  ........|...|..++|+|++.++++++.|++|.+|+.++
T Consensus        84 lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~w--k~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t  160 (942)
T KOG0973|consen   84 LASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESW--KVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT  160 (942)
T ss_pred             EeeccCcceEEEeeeccc-CCccccccccccccccee--eEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc
Confidence            689999999999998741 1111000000 0000000  01111223558899999999999999999999999999999


Q ss_pred             CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      .+.+..+++|...|..+.|.|-|++|++-+.|++|++|+..
T Consensus       161 F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~  201 (942)
T KOG0973|consen  161 FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS  201 (942)
T ss_pred             ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcc
Confidence            99999999999999999999999999999999999999854

>KOG0772|consensus

Probab=99.66  E-value=1.3e-15  Score=99.06  Aligned_cols=122  Identities=16%  Similarity=0.282  Sum_probs=88.9

Q ss_pred             CeeecCCCeEEEEECCCCc----ceeeec-CCCCCeEEEEecCcc----------------------------------c
Q psy14458          1 MVSGHEDSSCVLYDIRGSR----PLQTFK-PHTADVRSIHLDHYT----------------------------------T   41 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~----~~~~~~-~~~~~i~~~~~~~~~----------------------------------~   41 (125)
                      |++|+.|-.|++||+....    ....+. ....+|++++|....                                  .
T Consensus       182 ~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm  261 (641)
T KOG0772|consen  182 FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDM  261 (641)
T ss_pred             eeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhh
Confidence            6899999999999997542    222222 234567777764311                                  1


Q ss_pred             ccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCc-eeEEeC-----CCCCceeEEEEccCCCeEEEeecCCeE
Q psy14458         42 EAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRGSR-PLQTFK-----PHTADVRSIRFSPSAYYLLTGGYDNKL  114 (125)
Q Consensus        42 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~-~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~d~~i  114 (125)
                      ..+..|...++|-+|+|.. +.+++++.||++++||+...+ ....++     +-+-.+....|+|++..|++|+.||.|
T Consensus       262 ~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSI  341 (641)
T KOG0772|consen  262 YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSI  341 (641)
T ss_pred             hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCce
Confidence            2223667889999999975 778999999999999997743 233333     122357789999999999999999999


Q ss_pred             EEEeCCCC
Q psy14458        115 VLTDLQGT  122 (125)
Q Consensus       115 ~~~~~~~~  122 (125)
                      .+|+.++.
T Consensus       342 Q~W~~~~~  349 (641)
T KOG0772|consen  342 QIWDKGSR  349 (641)
T ss_pred             eeeecCCc
Confidence            99997654

>KOG1407|consensus

Probab=99.64  E-value=6.7e-15  Score=88.75  Aligned_cols=69  Identities=22%  Similarity=0.359  Sum_probs=49.0

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         53 ALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      -++|+-++.+++..+..|.|.|......+++.++++|...+.||.|+|+|+++++|+.|..+.+||++.
T Consensus       152 e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E  220 (313)
T KOG1407|consen  152 EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE  220 (313)
T ss_pred             eeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence            333443333333333344444444444567777888999999999999999999999999999999863

>KOG0646|consensus

Probab=99.63  E-value=7.1e-15  Score=94.20  Aligned_cols=102  Identities=21%  Similarity=0.316  Sum_probs=87.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG-   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~-   79 (125)
                      ++|++.|.++++||+..+..+..+.- .                    ..+.+++++|-+..++.|+.+|.|.+.++.. 
T Consensus       191 l~TaS~D~t~k~wdlS~g~LLlti~f-p--------------------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~  249 (476)
T KOG0646|consen  191 LYTASEDRTIKLWDLSLGVLLLTITF-P--------------------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKL  249 (476)
T ss_pred             EEEecCCceEEEEEeccceeeEEEec-C--------------------CcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence            57899999999999999988777652 2                    5789999999999999999999999887643 


Q ss_pred             ---------------CceeEEeCCCCC--ceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         80 ---------------SRPLQTFKPHTA--DVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        80 ---------------~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                                     +..+..+.+|.+  .|+|++++-||..|++|+.||++++||+.+.+
T Consensus       250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence                           124556667887  99999999999999999999999999987653

>KOG2096|consensus

Probab=99.63  E-value=4.4e-15  Score=91.89  Aligned_cols=100  Identities=21%  Similarity=0.272  Sum_probs=86.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG-   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~-   79 (125)
                      |++++.|..|.+|+++ |+.++.+....                    ..-+..++||+|++++.++-.--|++|.+-- 
T Consensus       202 imsas~dt~i~lw~lk-Gq~L~~idtnq--------------------~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~  260 (420)
T KOG2096|consen  202 IMSASLDTKICLWDLK-GQLLQSIDTNQ--------------------SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFT  260 (420)
T ss_pred             EEEecCCCcEEEEecC-Cceeeeecccc--------------------ccccceeeCCCCcEEEEecCCCCceEEEEEec
Confidence            5789999999999998 88888887665                    5667789999999999999888999999732 


Q ss_pred             --C-----ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         80 --S-----RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        80 --~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                        +     ..+..+++|...|...+|+++...+++.+.||++++||..-
T Consensus       261 kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  261 KDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             cCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence              2     34667789999999999999999999999999999999753

>KOG0646|consensus

Probab=99.63  E-value=4.4e-15  Score=95.16  Aligned_cols=101  Identities=19%  Similarity=0.378  Sum_probs=88.8

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC--
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG--   79 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~--   79 (125)
                      +.|...+.|++|.+.+|..+..+..|-                    ..|+|+.|+-++.++++|+.||.|.+|++..  
T Consensus        97 ~ag~i~g~lYlWelssG~LL~v~~aHY--------------------Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen   97 LAGTISGNLYLWELSSGILLNVLSAHY--------------------QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             EeecccCcEEEEEeccccHHHHHHhhc--------------------cceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence            344588999999999999999998888                    7889999999999999999999999999853  


Q ss_pred             -------CceeEEeCCCCCceeEEEEccC--CCeEEEeecCCeEEEEeCCCC
Q psy14458         80 -------SRPLQTFKPHTADVRSIRFSPS--AYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 -------~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~  122 (125)
                             -+++..|..|.-.|+.+...+.  ...++++|.|.++++||+..+
T Consensus       157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g  208 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG  208 (476)
T ss_pred             ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence                   3578888899999999887664  468999999999999999865

>KOG1273|consensus

Probab=99.63  E-value=7.9e-15  Score=90.63  Aligned_cols=99  Identities=21%  Similarity=0.423  Sum_probs=82.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      ||.|+.||.|.|||+.+......+.+|.                    .+|++++||++|.+|++++.|..+.+||+..+
T Consensus        38 lAvGc~nG~vvI~D~~T~~iar~lsaH~--------------------~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g   97 (405)
T KOG1273|consen   38 LAVGCANGRVVIYDFDTFRIARMLSAHV--------------------RPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG   97 (405)
T ss_pred             eeeeccCCcEEEEEccccchhhhhhccc--------------------cceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence            5899999999999999988777888887                    78899999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~  120 (125)
                      .+++.++ ...+|....|+|.. +..++.-.+..-.+-++.
T Consensus        98 s~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s  137 (405)
T KOG1273|consen   98 SPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS  137 (405)
T ss_pred             CceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEec
Confidence            9998888 78899999999943 444444444444554444

>KOG1332|consensus

Probab=99.63  E-value=2.5e-15  Score=89.87  Aligned_cols=122  Identities=17%  Similarity=0.247  Sum_probs=96.2

Q ss_pred             CeeecCCCeEEEEECCCCc--ceeeecCCCCCeEEEEecCccc---------------------------ccccCCCCCe
Q psy14458          1 MVSGHEDSSCVLYDIRGSR--PLQTFKPHTADVRSIHLDHYTT---------------------------EAGTRQGSPV   51 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~---------------------------~~~~~~~~~i   51 (125)
                      |++++.|++|.||.-.+++  .......|...+++++|.+...                           .....|...+
T Consensus        73 LAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv  152 (299)
T KOG1332|consen   73 LASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV  152 (299)
T ss_pred             eeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence            6899999999999977663  3445667888888888855321                           1223667789


Q ss_pred             EEEEECCC---C-----------CEEEEEeCCCcEEEEEcCCCc--eeEEeCCCCCceeEEEEccC----CCeEEEeecC
Q psy14458         52 SALCVDPS---G-----------RLMVSGHEDSSCVLYDIRGSR--PLQTFKPHTADVRSIRFSPS----AYYLLTGGYD  111 (125)
Q Consensus        52 ~~~~~~~~---~-----------~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~d  111 (125)
                      ++++|.|-   |           ..|++|+.|+.|+||+...++  ....+.+|...|+.++|.|.    ...|++++.|
T Consensus       153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD  232 (299)
T KOG1332|consen  153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD  232 (299)
T ss_pred             ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence            99999985   3           459999999999999988753  33447899999999999994    3689999999


Q ss_pred             CeEEEEeCCCC
Q psy14458        112 NKLVLTDLQGT  122 (125)
Q Consensus       112 ~~i~~~~~~~~  122 (125)
                      |++.+|..+..
T Consensus       233 g~viIwt~~~e  243 (299)
T KOG1332|consen  233 GTVIIWTKDEE  243 (299)
T ss_pred             CcEEEEEecCc
Confidence            99999987744

>KOG0301|consensus

Probab=99.63  E-value=5e-15  Score=98.82  Aligned_cols=116  Identities=23%  Similarity=0.248  Sum_probs=96.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcc-------------------cccccCCCCCeEEEEECCCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYT-------------------TEAGTRQGSPVSALCVDPSGR   61 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------~~~~~~~~~~i~~~~~~~~~~   61 (125)
                      +++|++|.++++|-.  +++...+++|+.+|.++..-+..                   ......|.+-|..+++-++. 
T Consensus       115 ~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~-  191 (745)
T KOG0301|consen  115 LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDS-  191 (745)
T ss_pred             eEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCCchhhhhccchhheeeeEEecCC-
Confidence            578999999999995  55566688899988887753322                   22334788899999998764 


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         62 LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        62 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      .|+++++||.|++|++ +++.+..+.+|.+.|.++...+++..++++++|+++++|+..
T Consensus       192 ~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  192 HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            4788889999999998 889999999999999999988888999999999999999864

>KOG1539|consensus

Probab=99.62  E-value=4.8e-15  Score=100.63  Aligned_cols=100  Identities=21%  Similarity=0.327  Sum_probs=89.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      ++.+..|-.|+++|..+.+....|.+|.                    ..|++++|||+|+.+++++.|++|++||+.++
T Consensus       549 ~a~~~ddf~I~vvD~~t~kvvR~f~gh~--------------------nritd~~FS~DgrWlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  549 LAIALDDFSIRVVDVVTRKVVREFWGHG--------------------NRITDMTFSPDGRWLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             hhhhcCceeEEEEEchhhhhhHHhhccc--------------------cceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence            4567888999999999988888899888                    88999999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecC-CeEEEEeCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYD-NKLVLTDLQG  121 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~~i~~~~~~~  121 (125)
                      .++-.+. -..++..+.|+|+|.++++...| .-|++|.-++
T Consensus       609 ~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  609 TLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             ceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence            9988776 56788899999999999999887 6699996543

>KOG0973|consensus

Probab=99.62  E-value=6.1e-15  Score=101.98  Aligned_cols=113  Identities=15%  Similarity=0.274  Sum_probs=85.2

Q ss_pred             Ceeec--CCCeEEEEECCCCc-ceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q psy14458          1 MVSGH--EDSSCVLYDIRGSR-PLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDI   77 (125)
Q Consensus         1 l~t~~--~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~   77 (125)
                      ++||+  .|+.+.||+...-- ........         -+........|...++|+.|+|+|.+|++|++|..|.+|..
T Consensus        28 ~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~---------l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~   98 (942)
T KOG0973|consen   28 FATGGQVLDGGIVIWSQDPVLDEKEEKNEN---------LPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER   98 (942)
T ss_pred             EecCCccccccceeeccccccchhhhhhcc---------cchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence            57888  89999999875421 00000000         01112222334489999999999999999999999999997


Q ss_pred             CC-------C-----------ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         78 RG-------S-----------RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        78 ~~-------~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ..       +           +....+.+|.+.|..+.|+|++.++++++.|++|.+||.++.
T Consensus        99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc
Confidence            62       1           256677899999999999999999999999999999998875

>KOG1274|consensus

Probab=99.62  E-value=3.9e-14  Score=97.06  Aligned_cols=121  Identities=15%  Similarity=0.286  Sum_probs=101.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccccc------------------------------CCCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGT------------------------------RQGSP   50 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------------------~~~~~   50 (125)
                      ++.|+.|-.|++-+.........+.+|..+|.++.+++..+..+.                              .....
T Consensus       111 iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i  190 (933)
T KOG1274|consen  111 IAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRI  190 (933)
T ss_pred             EEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccce
Confidence            478999999999999999999999999999999998764332221                              12356


Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC--CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK--PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ++.++|+|++..++..+.|+.|++|+....+....++  .+...+..+.|+|+|++|++++.||.|.|||+++
T Consensus       191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  191 CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            7889999998888888899999999988888777776  2344588999999999999999999999999985

>KOG0649|consensus

Probab=99.61  E-value=6.5e-14  Score=84.07  Aligned_cols=123  Identities=15%  Similarity=0.191  Sum_probs=97.0

Q ss_pred             CeeecCCCeEEEEECCCC----------cceeeecCCCCCeEEEEecCcccccc--------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGS----------RPLQTFKPHTADVRSIHLDHYTTEAG--------------------------   44 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~~--------------------------   44 (125)
                      |+.|..+|.|-++.+.+.          ..+..++.|.+||+.+.+........                          
T Consensus        25 l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~  104 (325)
T KOG0649|consen   25 LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESLATKRLWEVK  104 (325)
T ss_pred             EEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehhhhhhccchhhhhhc
Confidence            578899999999988642          22344578999999998753111100                          


Q ss_pred             ------cCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         45 ------TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        45 ------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                            ...-..|+.+-+.|..+-++++..|+.++-||+.+++....+++|...|+++.--.....+++|++||++++||
T Consensus       105 ~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd  184 (325)
T KOG0649|consen  105 IPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWD  184 (325)
T ss_pred             CccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEe
Confidence                  12225689999999887777777999999999999999999999999999998855555789999999999999


Q ss_pred             CCCCC
Q psy14458        119 LQGTM  123 (125)
Q Consensus       119 ~~~~~  123 (125)
                      .++..
T Consensus       185 ~kt~k  189 (325)
T KOG0649|consen  185 TKTQK  189 (325)
T ss_pred             ccccc
Confidence            98864

>KOG1539|consensus

Probab=99.61  E-value=5.4e-15  Score=100.39  Aligned_cols=122  Identities=17%  Similarity=0.296  Sum_probs=103.7

Q ss_pred             eeecCCCeEEEEECCCCcceeee---cCCCCCeEEEEecCcccccc---------------------cCCCCCeEEEEEC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTF---KPHTADVRSIHLDHYTTEAG---------------------TRQGSPVSALCVD   57 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~---------------------~~~~~~i~~~~~~   57 (125)
                      +.|...|.|-+||+++|-....|   ..|..+|+.+..++.+....                     ...+..+.++..+
T Consensus       464 ~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~h  543 (910)
T KOG1539|consen  464 FIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYH  543 (910)
T ss_pred             EEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeee
Confidence            45777899999999999887777   46888999998876542222                     1344677888888


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         58 PSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        58 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .....++.+.+|-.|.++|..+.+.++.|.+|.+.++.++|+|||+++++++.|++|++||+-++.
T Consensus       544 r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~  609 (910)
T KOG1539|consen  544 RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT  609 (910)
T ss_pred             ehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence            888889999999999999999999999999999999999999999999999999999999998764

>KOG0299|consensus

Probab=99.61  E-value=1.5e-14  Score=92.67  Aligned_cols=120  Identities=17%  Similarity=0.242  Sum_probs=100.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCc----------------------ccccccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHY----------------------TTEAGTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~----------------------~~~~~~~~~~~i~~~~~~~   58 (125)
                      |++|+.|..|.||+.++.++++.+.+|.+.|.+++|...                      .+.....|...|..+....
T Consensus       217 latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~  296 (479)
T KOG0299|consen  217 LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS  296 (479)
T ss_pred             EEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc
Confidence            589999999999999999999999999999999998531                      1233347888999998888


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .+..+-.|..|.++++|++.. +....+.++.+.+-|++|- +..++++|+.+|.|.+|++...
T Consensus       297 reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  297 RERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKK  358 (479)
T ss_pred             ccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeeccc
Confidence            888888888999999999944 3334477888889999886 5579999999999999998654

>KOG0288|consensus

Probab=99.61  E-value=1.7e-14  Score=91.56  Aligned_cols=75  Identities=24%  Similarity=0.365  Sum_probs=65.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCC----CceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHT----ADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +..|+++..++++..+.+.+.|.++.+.|+++.+....+.+..    ...+.+.|+|++.++++||.||.+++|++.++
T Consensus       341 gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg  419 (459)
T KOG0288|consen  341 GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG  419 (459)
T ss_pred             CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence            3689999999999999999999999999999988777776422    23678999999999999999999999999876

>KOG2048|consensus

Probab=99.60  E-value=4.5e-14  Score=94.05  Aligned_cols=103  Identities=13%  Similarity=0.257  Sum_probs=90.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++.+-+|+|.-||+.++++...+....                    ..|.+++.+|.+..++.||+||.++.++...+
T Consensus        83 LFS~g~sg~i~EwDl~~lk~~~~~d~~g--------------------g~IWsiai~p~~~~l~IgcddGvl~~~s~~p~  142 (691)
T KOG2048|consen   83 LFSSGLSGSITEWDLHTLKQKYNIDSNG--------------------GAIWSIAINPENTILAIGCDDGVLYDFSIGPD  142 (691)
T ss_pred             EEeecCCceEEEEecccCceeEEecCCC--------------------cceeEEEeCCccceEEeecCCceEEEEecCCc
Confidence            5788999999999999999999888766                    78899999999999999999998888888776


Q ss_pred             ceeE--EeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 RPLQ--TFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +...  .+...++.|.++.|+|++..++.|+.||.|++||..++.
T Consensus       143 ~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~  187 (691)
T KOG2048|consen  143 KITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ  187 (691)
T ss_pred             eEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence            6443  344567899999999999999999999999999998764

>KOG1036|consensus

Probab=99.60  E-value=2.7e-14  Score=87.60  Aligned_cols=122  Identities=21%  Similarity=0.259  Sum_probs=90.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc----------------------cCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG----------------------TRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------------~~~~~~i~~~~~~~   58 (125)
                      +++|++|++|++||.+.......+. ....|.++...+..+...                      ...+-.+.|+++.|
T Consensus       109 vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p  187 (323)
T KOG1036|consen  109 VISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP  187 (323)
T ss_pred             EEEcccCccEEEEeccccccccccc-cCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec
Confidence            5799999999999999754444444 333666666544332221                      12345789999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCC----ceeEEeCCCCC---------ceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGS----RPLQTFKPHTA---------DVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ++.-++.++-||.|.+=.+...    +.-..|+.|..         +|++++|+|-...+++|+.||.|.+||+.++.
T Consensus       188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK  265 (323)
T KOG1036|consen  188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK  265 (323)
T ss_pred             CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh
Confidence            9888999999999876544443    44555666642         68999999998999999999999999998764

>KOG4378|consensus

Probab=99.60  E-value=1.2e-14  Score=94.49  Aligned_cols=124  Identities=23%  Similarity=0.415  Sum_probs=87.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc------------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG------------------------------------   44 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------------------------------   44 (125)
                      +++|+..+.|+|||++...+...+++|...|+.+.++......+                                    
T Consensus        94 ~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys  173 (673)
T KOG4378|consen   94 EISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYS  173 (673)
T ss_pred             eeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecc
Confidence            46899999999999997667777888988888887643111110                                    


Q ss_pred             -------------------------------cCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCc
Q psy14458         45 -------------------------------TRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTAD   92 (125)
Q Consensus        45 -------------------------------~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~   92 (125)
                                                     ..|..+...|||+|.. .++++.+.|..|++||.+.......+. ...+
T Consensus       174 ~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~P  252 (673)
T KOG4378|consen  174 PSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHP  252 (673)
T ss_pred             cccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCC
Confidence                                           1344555566666644 344555666666666665444333333 4567


Q ss_pred             eeEEEEccCCCeEEEeecCCeEEEEeCCCCCCC
Q psy14458         93 VRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        93 v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      ...++|.++|.+|+.|+..|.|..||+|....|
T Consensus       253 lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  253 LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             cceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence            889999999999999999999999999987766

>KOG0301|consensus

Probab=99.60  E-value=1.4e-14  Score=96.75  Aligned_cols=117  Identities=26%  Similarity=0.364  Sum_probs=100.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCc-------------------ccccccCCCCCeEEEEECCCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHY-------------------TTEAGTRQGSPVSALCVDPSGR   61 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~~~   61 (125)
                      +++|+.|..|.+|.+....++..+++|...|.++.....                   ......+|+..|..++.-|++ 
T Consensus        74 l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-  152 (745)
T KOG0301|consen   74 LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-  152 (745)
T ss_pred             eEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCC-
Confidence            468999999999999999999999999999988874322                   123346889999999999988 


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         62 LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        62 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      .+++|+.|.+|++|.-  ++.+.+|.+|..-|+.+++-|+ ..+++++.||.|+.|++.+
T Consensus       153 ~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~g  209 (745)
T KOG0301|consen  153 TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLDG  209 (745)
T ss_pred             cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEeccC
Confidence            8999999999999964  8889999999999999999876 4789999999999999944

>KOG1274|consensus

Probab=99.60  E-value=3.6e-14  Score=97.21  Aligned_cols=103  Identities=22%  Similarity=0.449  Sum_probs=91.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++|+.++.|.+|....+..-..+...+                    .++.+++++-+|++++.|+.|-.|++.+..+.
T Consensus        69 f~~~s~~~tv~~y~fps~~~~~iL~Rft--------------------lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~  128 (933)
T KOG1274|consen   69 FLTGSEQNTVLRYKFPSGEEDTILARFT--------------------LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS  128 (933)
T ss_pred             eEEeeccceEEEeeCCCCCccceeeeee--------------------ccceEEEEecCCcEEEeecCceeEEEEecccc
Confidence            5789999999999988776654444444                    67889999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .....+++|+++|.++.|+|+++++++.+.||.+++||++++.
T Consensus       129 s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~  171 (933)
T KOG1274|consen  129 SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI  171 (933)
T ss_pred             chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch
Confidence            9999999999999999999999999999999999999998763

>KOG2394|consensus

Probab=99.60  E-value=6.2e-15  Score=96.26  Aligned_cols=80  Identities=20%  Similarity=0.377  Sum_probs=73.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      ||+.++||.++|||..+.+.+..++..-                    ....|++|||||+++++|++|-.|.||.+..+
T Consensus       305 LA~VSqDGfLRvF~fdt~eLlg~mkSYF--------------------GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er  364 (636)
T KOG2394|consen  305 LATVSQDGFLRIFDFDTQELLGVMKSYF--------------------GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER  364 (636)
T ss_pred             EEEEecCceEEEeeccHHHHHHHHHhhc--------------------cceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence            5889999999999999988887777655                    67899999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEcc
Q psy14458         81 RPLQTFKPHTADVRSIRFSP  100 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~  100 (125)
                      +.+..-.+|+.+|+.++|.|
T Consensus       365 RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  365 RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eEEEeccccccceeeEeecc
Confidence            99988889999999999983

>KOG4328|consensus

Probab=99.59  E-value=5.3e-14  Score=90.27  Aligned_cols=120  Identities=22%  Similarity=0.371  Sum_probs=91.3

Q ss_pred             CeeecCCCeEEEEECCCCc----ceeeecCCCCCeEEEEecCcc------------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSR----PLQTFKPHTADVRSIHLDHYT------------------------------------   40 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~----~~~~~~~~~~~i~~~~~~~~~------------------------------------   40 (125)
                      +++|..-|.|-+||+.+..    .+..+..|..+|..+.|.+..                                    
T Consensus       203 va~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~f  282 (498)
T KOG4328|consen  203 VAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWF  282 (498)
T ss_pred             EEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceee
Confidence            4788889999999996332    345566788888888774310                                    


Q ss_pred             --------------------------------cccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCC--c--ee
Q psy14458         41 --------------------------------TEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRGS--R--PL   83 (125)
Q Consensus        41 --------------------------------~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~--~--~~   83 (125)
                                                      .....-|...|+.++++|.. .++++++.|++++|||++..  +  ++
T Consensus       283 s~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~  362 (498)
T KOG4328|consen  283 SSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPF  362 (498)
T ss_pred             eeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcc
Confidence                                            00011345689999999975 67899999999999999863  2  23


Q ss_pred             EEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         84 QTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        84 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ...-.|...|++..|+|.+-.+++.+.|..|++||..
T Consensus       363 lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  363 LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             eecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            4444699999999999977679999999999999974

>KOG1273|consensus

Probab=99.59  E-value=8.9e-15  Score=90.41  Aligned_cols=73  Identities=22%  Similarity=0.262  Sum_probs=69.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..|+.|++-|.+++.|+.+|.|-+||..+......+.+|..+|.+++|++||+.|+++|.|..+.+||+..+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence            6899999999999999999999999999988888889999999999999999999999999999999998775

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.58  E-value=1.2e-13  Score=82.23  Aligned_cols=72  Identities=26%  Similarity=0.532  Sum_probs=59.7

Q ss_pred             CCeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec------CCeEEEEeC
Q psy14458         49 SPVSALCVDPSGRLMVSGHE---DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY------DNKLVLTDL  119 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------d~~i~~~~~  119 (125)
                      ..+..+.|+|+|++++.++.   .|.+.+||.++.+.+..+. |.. +..++|+|||++++++..      |..+++|+.
T Consensus       101 ~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  101 QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence            56788999999999998864   3669999999888887776 433 678999999999998764      788999998


Q ss_pred             CCC
Q psy14458        120 QGT  122 (125)
Q Consensus       120 ~~~  122 (125)
                      .+.
T Consensus       179 ~G~  181 (194)
T PF08662_consen  179 QGR  181 (194)
T ss_pred             cCe
Confidence            754

>KOG0647|consensus

Probab=99.58  E-value=2.9e-14  Score=87.51  Aligned_cols=122  Identities=21%  Similarity=0.252  Sum_probs=89.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEe---------cC-----------ccc--ccccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHL---------DH-----------YTT--EAGTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~---------~~-----------~~~--~~~~~~~~~i~~~~~~~   58 (125)
                      |+||++|.+|+.||.+...++..+.- ...+++...         .+           ..+  ......+..+.|++..+
T Consensus       130 l~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~  208 (347)
T KOG0647|consen  130 LVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ  208 (347)
T ss_pred             eEecccccceeecccCCCCeeeeeec-cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe
Confidence            58999999999999998877766552 222222221         11           111  11123446789999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCC--ceeEEeCCCCC---------ceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGS--RPLQTFKPHTA---------DVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +....+.|+-+|.+-+..+..+  +.-..|+.|+.         .|++++|+|....|++.+.||++.+||-+.++
T Consensus       209 d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~  284 (347)
T KOG0647|consen  209 DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART  284 (347)
T ss_pred             cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh
Confidence            9888899999999999888765  44555665652         47889999998999999999999999987654

>KOG0643|consensus

Probab=99.58  E-value=9.8e-14  Score=84.11  Aligned_cols=123  Identities=20%  Similarity=0.282  Sum_probs=97.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc---------------------ccccCCCCCeEEEEECCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT---------------------EAGTRQGSPVSALCVDPS   59 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~~~i~~~~~~~~   59 (125)
                      |++++.|.++.+|-..+|+.+.++.+|++.|.++..+....                     ......+.++..+.|++.
T Consensus        25 lFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~  104 (327)
T KOG0643|consen   25 LFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFG  104 (327)
T ss_pred             EEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccC
Confidence            57999999999999989999999999999998887653221                     111234467888888888


Q ss_pred             CCEEEEEe-----CCCcEEEEEcCC-------CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         60 GRLMVSGH-----EDSSCVLYDIRG-------SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        60 ~~~~~~~~-----~~~~i~~~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +++++...     ..+.|.++|++.       .++...+..+...++.+-|.|-+++|++|..||.|..||.+++.
T Consensus       105 gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~  180 (327)
T KOG0643|consen  105 GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK  180 (327)
T ss_pred             CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc
Confidence            88776654     336688888873       45566677777889999999999999999999999999999864

>KOG0299|consensus

Probab=99.58  E-value=3e-14  Score=91.30  Aligned_cols=118  Identities=16%  Similarity=0.267  Sum_probs=92.5

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      ++++.|++|.-|++.+++...-+-... .|-.....+....- ..|...+.+++.+++++++++|..|..|.||+..+.+
T Consensus       158 fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k~~~~~~k~~r-~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e  235 (479)
T KOG0299|consen  158 FSASKDGTILKWDVLTGKKDRYIIERD-EVLKSHGNPLKESR-KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE  235 (479)
T ss_pred             eecCCCcceeeeehhcCcccccccccc-hhhhhccCCCCccc-ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccc
Confidence            678999999999999887552221111 11110111111111 2567889999999999999999999999999999999


Q ss_pred             eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         82 PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      .+..+..|.+.|.+++|-....-+++++.|+.+++|+++.
T Consensus       236 hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  236 HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             hhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence            9999999999999999988888999999999999999864

>KOG1007|consensus

Probab=99.57  E-value=2.9e-14  Score=87.25  Aligned_cols=100  Identities=24%  Similarity=0.431  Sum_probs=83.9

Q ss_pred             eecCCCeEEEEECCCCcceeeec-CCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCC-
Q psy14458          3 SGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRG-   79 (125)
Q Consensus         3 t~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~-   79 (125)
                      ....|+++..||+++.++...+. .|.                    ..+..+.|+|+. .+++++++||.|++||.+. 
T Consensus       188 ~tt~d~tl~~~D~RT~~~~~sI~dAHg--------------------q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t  247 (370)
T KOG1007|consen  188 ATTSDSTLQFWDLRTMKKNNSIEDAHG--------------------QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT  247 (370)
T ss_pred             EEeCCCcEEEEEccchhhhcchhhhhc--------------------ceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence            34568889999999888776665 243                    788899999975 6789999999999999987 


Q ss_pred             CceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ..++.++..|..+|.+++|+| ..+++++++.|..+.+|...+-
T Consensus       248 k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv  291 (370)
T KOG1007|consen  248 KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV  291 (370)
T ss_pred             CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence            467888999999999999999 5689999999999999987643

>KOG0278|consensus

Probab=99.57  E-value=5.3e-15  Score=88.95  Aligned_cols=123  Identities=19%  Similarity=0.300  Sum_probs=105.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc---------------------cCCCCCeEEEEECCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG---------------------TRQGSPVSALCVDPS   59 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------------------~~~~~~i~~~~~~~~   59 (125)
                      |++++.|+.-.+-+-+++.=+.+|.+|.+.|.....+.......                     ..|...|..++|+.+
T Consensus        32 lisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~d  111 (334)
T KOG0278|consen   32 LISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQD  111 (334)
T ss_pred             EEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEeccc
Confidence            57889999999888888888999999999998888765332222                     367788999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCc-eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSR-PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+++++|+.+..+++||+...+ +...+.+|.+.|..+-|....+.|++.+.|++|++||.+++.
T Consensus       112 s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt  176 (334)
T KOG0278|consen  112 SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT  176 (334)
T ss_pred             chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc
Confidence            9999999999999999997653 566788999999999999888888888999999999999875

>KOG0270|consensus

Probab=99.56  E-value=9.1e-15  Score=93.29  Aligned_cols=119  Identities=19%  Similarity=0.370  Sum_probs=87.9

Q ss_pred             CeeecCCCeEEEEECCCCcce---eeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPL---QTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS-GRLMVSGHEDSSCVLYD   76 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~d   76 (125)
                      +|.|.-|..|.|||+.-...+   ..+.......  ..-.+..-.....|+..+..++|+.. .+.|++|+.|.+|.+||
T Consensus       195 vAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~--~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD  272 (463)
T KOG0270|consen  195 VAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKK--KKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD  272 (463)
T ss_pred             EEEeccCceeEEeccccccccccceeechhhhhh--hhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence            477889999999999753221   1111000000  00001112223456677888888875 47899999999999999


Q ss_pred             cCCCceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCC
Q psy14458         77 IRGSRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      +.++++..++..|.++|.++.|+| ...++++|+.|+++.+.|+|.
T Consensus       273 ~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  273 VDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             cCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            999999999999999999999999 678999999999999999984

>KOG1009|consensus

Probab=99.56  E-value=4.3e-14  Score=89.52  Aligned_cols=112  Identities=19%  Similarity=0.352  Sum_probs=84.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC--
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR--   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~--   78 (125)
                      |+||+.|..|++|-+..+..-..-       ..+.    ....+..|...++++.|+|+|+.+++|+++|.+.+|-..  
T Consensus        29 laT~G~D~~iriW~v~r~~~~~~~-------~~V~----y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~   97 (434)
T KOG1009|consen   29 LATAGGDKDIRIWKVNRSEPGGGD-------MKVE----YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV   97 (434)
T ss_pred             eecccCccceeeeeeeecCCCCCc-------eeEE----EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence            589999999999988654332100       0000    001122344889999999999999999999999999865  


Q ss_pred             ------C-----C---ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         79 ------G-----S---RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        79 ------~-----~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                            +     .   .......+|...+..++|+|++.++++++.|..+++||+..++
T Consensus        98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~  156 (434)
T KOG1009|consen   98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ  156 (434)
T ss_pred             CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence                  2     1   1233455788999999999999999999999999999998875

>KOG0303|consensus

Probab=99.56  E-value=8.4e-14  Score=88.20  Aligned_cols=104  Identities=18%  Similarity=0.269  Sum_probs=88.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++++.|+.|.+||+.+++.+..+. |.                    ..|.+++|+.+|.++++.+.|..|+|||.+++
T Consensus       147 Llsag~Dn~v~iWnv~tgeali~l~-hp--------------------d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~  205 (472)
T KOG0303|consen  147 LLSAGSDNTVSIWNVGTGEALITLD-HP--------------------DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG  205 (472)
T ss_pred             HhhccCCceEEEEeccCCceeeecC-CC--------------------CeEEEEEeccCCceeeeecccceeEEEcCCCC
Confidence            5789999999999999999888877 76                    78999999999999999999999999999999


Q ss_pred             ceeEEeCCCCCc-eeEEEEccCCCeEEEee---cCCeEEEEeCCCCCCC
Q psy14458         81 RPLQTFKPHTAD-VRSIRFSPSAYYLLTGG---YDNKLVLTDLQGTMRP  125 (125)
Q Consensus        81 ~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~~  125 (125)
                      +.+..-.+|.+. -..+-|-.++.++.+|-   .++.+-+||..+...|
T Consensus       206 ~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP  254 (472)
T KOG0303|consen  206 TVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP  254 (472)
T ss_pred             cEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc
Confidence            999888878753 34566777888666653   4888999998776654

>KOG1188|consensus

Probab=99.55  E-value=6.5e-14  Score=87.13  Aligned_cols=122  Identities=25%  Similarity=0.434  Sum_probs=86.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcc----c-----------------------ccccCCCCCeEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYT----T-----------------------EAGTRQGSPVSA   53 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~----~-----------------------~~~~~~~~~i~~   53 (125)
                      ++++...|+|++||..+++.+..|+++...+..+.|....    .                       ......+.+..|
T Consensus        43 vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~  122 (376)
T KOG1188|consen   43 VAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFIC  122 (376)
T ss_pred             EEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceE
Confidence            4678888999999999999999998887666555553210    0                       000111234555


Q ss_pred             EEECCCCCEEEEEe----CCCcEEEEEcCCCce-eEEe-CCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCC
Q psy14458         54 LCVDPSGRLMVSGH----EDSSCVLYDIRGSRP-LQTF-KPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        54 ~~~~~~~~~~~~~~----~~~~i~~~d~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++..-....+++|.    .+-.|.+||++..+. +..+ ..|...|++++|+| +.+++++||.||-+.++|+...
T Consensus       123 ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  123 LDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             eeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            55554556666664    445677888877554 4443 47999999999999 6789999999999999998654

>KOG1445|consensus

Probab=99.55  E-value=6.5e-14  Score=93.61  Aligned_cols=111  Identities=16%  Similarity=0.238  Sum_probs=88.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |+||+.|..|+||-+..+... .+.....             ......-.+.++.|+|...-+......|.+++||+.++
T Consensus        95 LAT~S~D~~VKiW~lp~g~~q-~LSape~-------------~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stq  160 (1012)
T KOG1445|consen   95 LATCSRDEPVKIWKLPRGHSQ-KLSAPEI-------------DVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQ  160 (1012)
T ss_pred             hhcccCCCeeEEEecCCCccc-ccCCcce-------------eecCCceEEEEeecccCcCceEEeccCceEEEEEcccC
Confidence            689999999999999743221 1111100             00011156889999998766666668999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      +.+.++.+|...|.+..|+.||.++++.+.|+.|++||.+..+.|
T Consensus       161 k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~p  205 (1012)
T KOG1445|consen  161 KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEP  205 (1012)
T ss_pred             ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCc
Confidence            999999999999999999999999999999999999999988765

>KOG1408|consensus

Probab=99.55  E-value=3.6e-13  Score=91.09  Aligned_cols=123  Identities=24%  Similarity=0.426  Sum_probs=102.0

Q ss_pred             CeeecCCCeEEEEECCCC-cceeeecCCCCCeEEEEecCcc--cccc---------------------------cCCCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGS-RPLQTFKPHTADVRSIHLDHYT--TEAG---------------------------TRQGSP   50 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~--~~~~---------------------------~~~~~~   50 (125)
                      |++++.|..|+|||+... .+++++.+|...|+++.|....  ..+.                           ......
T Consensus       519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktT  598 (1080)
T KOG1408|consen  519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTT  598 (1080)
T ss_pred             hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccce
Confidence            689999999999999654 5678889999999999985311  0000                           012256


Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCC---CCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKP---HTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +..|++.|+.+++++++.|..|+||++..++....|++   |++....+...|.|.++++.+.|+++.++|.-++.
T Consensus       599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE  674 (1080)
T KOG1408|consen  599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE  674 (1080)
T ss_pred             EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence            89999999999999999999999999999999999984   55667789999999999999999999999987663

>KOG0290|consensus

Probab=99.55  E-value=2.4e-13  Score=83.32  Aligned_cols=104  Identities=24%  Similarity=0.397  Sum_probs=74.3

Q ss_pred             CeeecCCCeEEEEECCCCcc---eeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRP---LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYD   76 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d   76 (125)
                      +.+++-|.+..|||+.++..   ...+-.|.                    +.|..++|...+ ..|++.+.||.+++||
T Consensus       166 igtSSiDTTCTiWdie~~~~~~vkTQLIAHD--------------------KEV~DIaf~~~s~~~FASvgaDGSvRmFD  225 (364)
T KOG0290|consen  166 IGTSSIDTTCTIWDIETGVSGTVKTQLIAHD--------------------KEVYDIAFLKGSRDVFASVGADGSVRMFD  225 (364)
T ss_pred             eEeecccCeEEEEEEeeccccceeeEEEecC--------------------cceeEEEeccCccceEEEecCCCcEEEEE
Confidence            35788899999999988733   33344577                    455555555533 4555555666666666


Q ss_pred             cC-----------------------------------------------C-CceeEEeCCCCCceeEEEEcc-CCCeEEE
Q psy14458         77 IR-----------------------------------------------G-SRPLQTFKPHTADVRSIRFSP-SAYYLLT  107 (125)
Q Consensus        77 ~~-----------------------------------------------~-~~~~~~~~~~~~~v~~~~~~~-~~~~~~~  107 (125)
                      ++                                               . ..++..++.|.+.|+.++|.| ...+|++
T Consensus       226 LR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hict  305 (364)
T KOG0290|consen  226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICT  305 (364)
T ss_pred             ecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeee
Confidence            54                                               3 235566778999999999999 5689999


Q ss_pred             eecCCeEEEEeCCCCCC
Q psy14458        108 GGYDNKLVLTDLQGTMR  124 (125)
Q Consensus       108 ~~~d~~i~~~~~~~~~~  124 (125)
                      ++.|....+||++...+
T Consensus       306 aGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  306 AGDDCQALIWDLQQMPR  322 (364)
T ss_pred             cCCcceEEEEecccccc
Confidence            99999999999986543

>KOG0642|consensus

Probab=99.54  E-value=7.7e-14  Score=91.38  Aligned_cols=102  Identities=23%  Similarity=0.338  Sum_probs=84.6

Q ss_pred             CeeecCCCeEEEEECCC--------CcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcE
Q psy14458          1 MVSGHEDSSCVLYDIRG--------SRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSC   72 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i   72 (125)
                      |++++.|+.+++|++..        -+++.+|++|.                    .+|.|+++.+++..+++|+.||+|
T Consensus       309 lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~--------------------gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  309 LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE--------------------GPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             EEEeccccchhhhhhcccCCccccceeeeEEEeccc--------------------CceEEEEecCCceEEEeeccCcee
Confidence            58999999999999932        13456666676                    788999999999999999999999


Q ss_pred             EEEEcCCC----------ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         73 VLYDIRGS----------RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        73 ~~~d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +.|++...          .....+.+|...|+.+.+++....|++++.||++++|+....
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~  428 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE  428 (577)
T ss_pred             eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence            99965421          234456789999999999998889999999999999987644

>KOG2394|consensus

Probab=99.54  E-value=7.3e-14  Score=91.38  Aligned_cols=74  Identities=18%  Similarity=0.398  Sum_probs=69.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ..|..++|+|+|.+|++.+.||.++|+|..+.+.+..++..-+...|++|+|||++|++|++|.-+.||.+..+
T Consensus       291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er  364 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER  364 (636)
T ss_pred             ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence            58999999999999999999999999999999988888888889999999999999999999999999988643

>KOG2445|consensus

Probab=99.53  E-value=1.9e-13  Score=84.18  Aligned_cols=118  Identities=11%  Similarity=0.226  Sum_probs=89.7

Q ss_pred             CeeecCCCeEEEEECCCC------cceeeec-------CCCCCeEEEEecCcc---------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGS------RPLQTFK-------PHTADVRSIHLDHYT---------------------------   40 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~------~~~~~~~-------~~~~~i~~~~~~~~~---------------------------   40 (125)
                      |++++.||.+|||++...      +....++       .+..+..++.|++..                           
T Consensus       129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e  208 (361)
T KOG2445|consen  129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE  208 (361)
T ss_pred             EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence            588999999999987542      2222232       355677788876311                           


Q ss_pred             -------cccccCCCCCeEEEEECCC----CCEEEEEeCCCcEEEEEcCCC--------------------ceeEEeCCC
Q psy14458         41 -------TEAGTRQGSPVSALCVDPS----GRLMVSGHEDSSCVLYDIRGS--------------------RPLQTFKPH   89 (125)
Q Consensus        41 -------~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~~~d~~~~--------------------~~~~~~~~~   89 (125)
                             ......++.+|+.++|.|+    ..++++++.|| |+||.++..                    +.+..+..|
T Consensus       209 ~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H  287 (361)
T KOG2445|consen  209 NGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH  287 (361)
T ss_pred             CcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC
Confidence                   1222367789999999996    36799999999 999998730                    245557789


Q ss_pred             CCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         90 TADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        90 ~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      +++|..++|+-.|..|.+.+.||.+++|-.
T Consensus       288 ~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  288 NGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             CCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            999999999999999999999999999953

>KOG0321|consensus

Probab=99.53  E-value=6.2e-14  Score=93.12  Aligned_cols=103  Identities=23%  Similarity=0.372  Sum_probs=78.1

Q ss_pred             CeeecCCCeEEEEECCCCcceee--ecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEc
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQT--FKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDI   77 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~   77 (125)
                      |++.+.|.+++.||+...++...  +.+|.                    ..+.++||.|.. ..|++|+.||.+.|||+
T Consensus       115 lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~--------------------~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen  115 LVSASGDSTIRPWDVKTSRLVGGRLNLGHT--------------------GSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             EEEccCCceeeeeeeccceeecceeecccc--------------------cccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            57889999999999999887665  77888                    677888999965 78899999999999999


Q ss_pred             CCCc---------------------------eeEEeCCCCCceeE---EEEccCCCeEEEeec-CCeEEEEeCCCCC
Q psy14458         78 RGSR---------------------------PLQTFKPHTADVRS---IRFSPSAYYLLTGGY-DNKLVLTDLQGTM  123 (125)
Q Consensus        78 ~~~~---------------------------~~~~~~~~~~~v~~---~~~~~~~~~~~~~~~-d~~i~~~~~~~~~  123 (125)
                      +...                           ......++.+.+.+   +-+..|..+|+++++ |+.|+|||++...
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence            7311                           11112233344444   445567788888887 9999999998754

>KOG0641|consensus

Probab=99.53  E-value=6.2e-13  Score=79.34  Aligned_cols=100  Identities=30%  Similarity=0.602  Sum_probs=88.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++|..|.+..+||++.++.++.|..|.                    ..|.|+.|+|...++++++.|..|++-|+...
T Consensus       246 l~sg~~dssc~lydirg~r~iq~f~phs--------------------adir~vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  246 LASGHADSSCMLYDIRGGRMIQRFHPHS--------------------ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             eeeccCCCceEEEEeeCCceeeeeCCCc--------------------cceeEEEeCCCceEEEEecccceEEEeecccc
Confidence            5789999999999999999999999888                    78889999999999999999999999998642


Q ss_pred             ---c-eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         81 ---R-PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        81 ---~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                         + ++...-.|+.++..+.|+|+..-+++.+.|++..+|.+.
T Consensus       306 la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  306 LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             hhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence               2 233344699999999999999999999999999999764

>KOG0307|consensus

Probab=99.52  E-value=1e-13  Score=96.71  Aligned_cols=123  Identities=19%  Similarity=0.324  Sum_probs=92.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeee--cCCCCCeEEEEecCc-----------------------ccccccCCC--CCeEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTF--KPHTADVRSIHLDHY-----------------------TTEAGTRQG--SPVSA   53 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~~~~~~~-----------------------~~~~~~~~~--~~i~~   53 (125)
                      |++|++||.|.|||+...+.-..+  .....+|.++.|+..                       .+.....+.  ..+..
T Consensus       132 LASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~  211 (1049)
T KOG0307|consen  132 LASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV  211 (1049)
T ss_pred             eeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence            689999999999999875544443  225678899998631                       111122222  24779


Q ss_pred             EEECCCC-CEEEEEeCCC---cEEEEEcCC-CceeEEeCCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCCCCC
Q psy14458         54 LCVDPSG-RLMVSGHEDS---SCVLYDIRG-SRPLQTFKPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        54 ~~~~~~~-~~~~~~~~~~---~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.|+|+. ..++++++|.   .|.+||+|. ..++..++.|...|.++.|++.+ .++++++.|+.|.+||.+++.
T Consensus       212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE  287 (1049)
T KOG0307|consen  212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE  287 (1049)
T ss_pred             eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence            9999986 5666666553   389999987 45677788999999999999954 899999999999999998864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.52  E-value=1.1e-12  Score=82.25  Aligned_cols=100  Identities=16%  Similarity=0.254  Sum_probs=79.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLM-VSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~i~~~d~~~   79 (125)
                      +++++.|+.|++||+.+++....+..+.                     .+.+++|+|++..+ +++..++.|++||..+
T Consensus         4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~---------------------~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~   62 (300)
T TIGR03866         4 YVSNEKDNTISVIDTATLEVTRTFPVGQ---------------------RPRGITLSKDGKLLYVCASDSDTIQVIDLAT   62 (300)
T ss_pred             EEEecCCCEEEEEECCCCceEEEEECCC---------------------CCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence            4688999999999999888877776443                     35678999999876 5677889999999998


Q ss_pred             CceeEEeCCCCCceeEEEEccCCCeEEE-eecCCeEEEEeCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSPSAYYLLT-GGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~~i~~~~~~~~  122 (125)
                      ++....+..+.. +..+.|+|+++.++. ++.|+.+.+||+++.
T Consensus        63 ~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~  105 (300)
T TIGR03866        63 GEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETR  105 (300)
T ss_pred             CcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            887776664433 567899999987755 456899999999864

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0650|consensus

Probab=99.52  E-value=2.2e-13  Score=90.20  Aligned_cols=74  Identities=22%  Similarity=0.379  Sum_probs=50.6

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCCC
Q psy14458         51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      +.++.|+|...+++.++ ...|++||+..++.+..+......|..++.+|.|..++.|+.|+.+.++|+.-..+|
T Consensus       569 vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP  642 (733)
T KOG0650|consen  569 VQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP  642 (733)
T ss_pred             eeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch
Confidence            34444444444444442 334555555555444445445678999999999999999999999999999877654

>KOG0639|consensus

Probab=99.52  E-value=4.2e-14  Score=92.14  Aligned_cols=100  Identities=19%  Similarity=0.363  Sum_probs=89.3

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      ++++.||.|.|||+.+...+..|++|.                    +...||.++++|..|-+|+-|++|+.||++++.
T Consensus       525 FsccsdGnI~vwDLhnq~~VrqfqGht--------------------DGascIdis~dGtklWTGGlDntvRcWDlregr  584 (705)
T KOG0639|consen  525 FSCCSDGNIAVWDLHNQTLVRQFQGHT--------------------DGASCIDISKDGTKLWTGGLDNTVRCWDLREGR  584 (705)
T ss_pred             eeeccCCcEEEEEcccceeeecccCCC--------------------CCceeEEecCCCceeecCCCccceeehhhhhhh
Confidence            678999999999999999999999999                    889999999999999999999999999999988


Q ss_pred             eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         82 PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .+.... ....|.++.++|++.+++.|=+.+.+.+......
T Consensus       585 qlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp  624 (705)
T KOG0639|consen  585 QLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP  624 (705)
T ss_pred             hhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc
Confidence            776554 5678999999999999999999888887765543

>KOG1272|consensus

Probab=99.51  E-value=3.6e-14  Score=91.35  Aligned_cols=104  Identities=19%  Similarity=0.324  Sum_probs=91.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++++..|.++.-|+.+|+.+..+....                    ..+..++-+|-...+-+|..+|+|.+|.....
T Consensus       224 L~~~~~~G~L~Y~DVS~GklVa~~~t~~--------------------G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk  283 (545)
T KOG1272|consen  224 LVAASEAGFLKYQDVSTGKLVASIRTGA--------------------GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK  283 (545)
T ss_pred             eeecccCCceEEEeechhhhhHHHHccC--------------------CccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence            4677888888888888888887776555                    56778888888888999999999999999988


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMR  124 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  124 (125)
                      +++..+-.|.++|+++++.++|.++++.+.|..++|||+++..+
T Consensus       284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q  327 (545)
T KOG1272|consen  284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ  327 (545)
T ss_pred             chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc
Confidence            88888888999999999999999999999999999999997644

>KOG2106|consensus

Probab=99.48  E-value=2.8e-12  Score=83.67  Aligned_cols=115  Identities=11%  Similarity=0.199  Sum_probs=86.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc--------------------cCCCCCeEEEEECCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG--------------------TRQGSPVSALCVDPSG   60 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------------------~~~~~~i~~~~~~~~~   60 (125)
                      |+|++.|+.+++|+  ..+.+.... -..+..++.|++......                    -..+++++++.++|+|
T Consensus       383 ~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G  459 (626)
T KOG2106|consen  383 LLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDG  459 (626)
T ss_pred             eeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCC
Confidence            58999999999999  455544433 345556666655331111                    1336899999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCc-eeEEeC-CCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         61 RLMVSGHEDSSCVLYDIRGSR-PLQTFK-PHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        61 ~~~~~~~~~~~i~~~d~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      .+++.|+.|+.|++|-+.... ...... .+..++.++.|++|++++.+-+.|-.|-.|.
T Consensus       460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            999999999999999986543 332222 3448899999999999999999999999993

>KOG1524|consensus

Probab=99.48  E-value=2.6e-13  Score=89.15  Aligned_cols=99  Identities=17%  Similarity=0.241  Sum_probs=75.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc---------------------ccccCCCCCeEEEEECCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT---------------------EAGTRQGSPVSALCVDPS   59 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~~~i~~~~~~~~   59 (125)
                      |+|.++||.|++|. ++|-...++.....+|++++|.+...                     ....+|..-|.++.|++.
T Consensus       119 Llt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~  197 (737)
T KOG1524|consen  119 LLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQ  197 (737)
T ss_pred             eeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCcc
Confidence            57999999999999 56766666666788999999976432                     222377788999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccC
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPS  101 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~  101 (125)
                      .+.+++|++|-..++||.. |..++.-..|+-++++++|+|+
T Consensus       198 s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  198 SNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE  238 (737)
T ss_pred             ccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc
Confidence            9999999999999999975 3334334445555555555555

>KOG0649|consensus

Probab=99.47  E-value=2.5e-12  Score=77.35  Aligned_cols=100  Identities=19%  Similarity=0.326  Sum_probs=79.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      ++.++.|+.++-||+++|+....+++|+                    +-+.++..-.....+++|++||++++||.+++
T Consensus       129 i~~AgGD~~~y~~dlE~G~i~r~~rGHt--------------------DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~  188 (325)
T KOG0649|consen  129 ILFAGGDGVIYQVDLEDGRIQREYRGHT--------------------DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQ  188 (325)
T ss_pred             EEEecCCeEEEEEEecCCEEEEEEcCCc--------------------ceeeeeeecccCcceeecCCCccEEEEecccc
Confidence            3567799999999999999999999999                    78888888666678999999999999999999


Q ss_pred             ceeEEeCCCCC----------ceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 RPLQTFKPHTA----------DVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~~~~~~~~~----------~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.+..+...+.          ++-+++-  +..++++|+ ...+.+|.+++..
T Consensus       189 k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse  238 (325)
T KOG0649|consen  189 KHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSE  238 (325)
T ss_pred             ceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCC
Confidence            88877764322          2444444  555777764 4669999998764

>KOG0644|consensus

Probab=99.47  E-value=2.3e-14  Score=97.86  Aligned_cols=96  Identities=20%  Similarity=0.436  Sum_probs=89.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      +++|++|..++||...+..++....+|.                    ..|+.++.+.+..++++++.|..|++|.+.++
T Consensus       205 Iitgsdd~lvKiwS~et~~~lAs~rGhs--------------------~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  205 IITGSDDRLVKIWSMETARCLASCRGHS--------------------GDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             EeecCccceeeeeeccchhhhccCCCCc--------------------cccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            4799999999999999999999999998                    67788899988899999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      .++..+.+|.+.|++++|+|-.    +.+.||++++||.+
T Consensus       265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             chHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            9999999999999999999965    77889999999987

>KOG3881|consensus

Probab=99.45  E-value=2.1e-12  Score=81.72  Aligned_cols=102  Identities=26%  Similarity=0.461  Sum_probs=88.9

Q ss_pred             CeeecCCCeEEEEECCCCc-ceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSR-PLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |+++..-+.+++||.+.++ ++..|.-.+                    .+++++...|.++++++|...+.+..+|.+.
T Consensus       219 fat~T~~hqvR~YDt~~qRRPV~~fd~~E--------------------~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~  278 (412)
T KOG3881|consen  219 FATITRYHQVRLYDTRHQRRPVAQFDFLE--------------------NPISSTGLTPSGNFIYTGNTKGQLAKFDLRG  278 (412)
T ss_pred             EEEEecceeEEEecCcccCcceeEecccc--------------------CcceeeeecCCCcEEEEecccchhheecccC
Confidence            5788888999999987653 455555444                    6889999999999999999999999999999


Q ss_pred             CceeEE-eCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         80 SRPLQT-FKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++.+.. +.+..+.++++..+|++.++++++-|+.++|+|+++.
T Consensus       279 ~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  279 GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            988776 7788899999999999999999999999999999883

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.43  E-value=1e-11  Score=77.88  Aligned_cols=108  Identities=15%  Similarity=0.208  Sum_probs=76.0

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEE-EeCCCcEEEEEcCCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVS-GHEDSSCVLYDIRGS   80 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~   80 (125)
                      +++..++.|++||+.+++.+..+..+...+.             ........++++|++++++. ...++.+.+||..++
T Consensus       173 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~  239 (300)
T TIGR03866       173 VSSEIGGTVSVIDVATRKVIKKITFEIPGVH-------------PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY  239 (300)
T ss_pred             EEcCCCCEEEEEEcCcceeeeeeeecccccc-------------cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            3455689999999998876655432210000             00023446889999987544 345678999999888


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEee-cCCeEEEEeCCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGG-YDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~  123 (125)
                      +....+. +...+.++.|+|+++++++++ .++.|.+||++++.
T Consensus       240 ~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       240 EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            7765543 445788999999999988864 58999999998764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1063|consensus

Probab=99.43  E-value=1.5e-12  Score=87.41  Aligned_cols=95  Identities=22%  Similarity=0.368  Sum_probs=81.6

Q ss_pred             CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc----ee
Q psy14458          8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR----PL   83 (125)
Q Consensus         8 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~   83 (125)
                      -.|++|+..+....+.+.+|.                    -.|+.++|||++++|++.+.|.++.+|......    ..
T Consensus       552 AvI~lw~t~~W~~~~~L~~Hs--------------------LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f  611 (764)
T KOG1063|consen  552 AVIRLWNTANWLQVQELEGHS--------------------LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF  611 (764)
T ss_pred             eEEEEEeccchhhhheecccc--------------------eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh
Confidence            357788888888888888887                    899999999999999999999999999985532    23


Q ss_pred             EEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         84 QTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        84 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ...+.|..-|....|+|++.+++++|.|+++.+|.....
T Consensus       612 a~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  612 ACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             ccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            336689999999999999999999999999999987654

>KOG2919|consensus

Probab=99.43  E-value=5.5e-12  Score=78.50  Aligned_cols=125  Identities=18%  Similarity=0.336  Sum_probs=95.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecC--CCCCe---EEEEecCccccc-----------------------------ccC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKP--HTADV---RSIHLDHYTTEA-----------------------------GTR   46 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~--~~~~i---~~~~~~~~~~~~-----------------------------~~~   46 (125)
                      +++.+.|.-|++||..+|+....+..  |..++   -+++|++.....                             -..
T Consensus       126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~g  205 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFG  205 (406)
T ss_pred             eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccc
Confidence            47889999999999999987665542  22222   244443311100                             113


Q ss_pred             CCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec-CCeEEEEeCCCCCC
Q psy14458         47 QGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY-DNKLVLTDLQGTMR  124 (125)
Q Consensus        47 ~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~i~~~~~~~~~~  124 (125)
                      +...+.|++++|.. ..++.|+-..++-|+....+.++..+-+|.+.|++++|.++|+.+.+|+. |..|..||+|....
T Consensus       206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~  285 (406)
T KOG2919|consen  206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD  285 (406)
T ss_pred             ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence            34678999999976 48899998888889988888889888899999999999999999999885 88999999987654


Q ss_pred             C
Q psy14458        125 P  125 (125)
Q Consensus       125 ~  125 (125)
                      |
T Consensus       286 p  286 (406)
T KOG2919|consen  286 P  286 (406)
T ss_pred             h
Confidence            3

>KOG0307|consensus

Probab=99.43  E-value=9.1e-13  Score=92.09  Aligned_cols=123  Identities=16%  Similarity=0.302  Sum_probs=102.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCC--CCeEEEEecCccc---------------------------ccccCCCCCe
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHT--ADVRSIHLDHYTT---------------------------EAGTRQGSPV   51 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~---------------------------~~~~~~~~~i   51 (125)
                      |++++.+|++.|||++..+++-.+..+.  ..+..+.|++...                           .....|...|
T Consensus       177 LAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gi  256 (1049)
T KOG0307|consen  177 LASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGI  256 (1049)
T ss_pred             hhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccce
Confidence            5789999999999999888776665443  3577888876221                           1124788899


Q ss_pred             EEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCCC
Q psy14458         52 SALCVDPSG-RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        52 ~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .++.|++.+ .++++++.|+.|.+|+..+++.+..+....+++..+.|+| +...+++++.||.|.|+.+++..
T Consensus       257 lslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  257 LSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999999987 8899999999999999999999999998889999999999 45688889999999999998764

>KOG2110|consensus

Probab=99.42  E-value=8e-12  Score=78.65  Aligned_cols=76  Identities=17%  Similarity=0.299  Sum_probs=63.2

Q ss_pred             CCeEEEEECCCCCEEEEE--eCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCe-EEEEeCCCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSG--HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNK-LVLTDLQGTMR  124 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~~~  124 (125)
                      ..+..+..++.+.+++--  ...|.|.+||..+-+.+..+.+|++.+.+++|+|+|.+|+++|..|+ |+|+.+.++.+
T Consensus       130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k  208 (391)
T KOG2110|consen  130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK  208 (391)
T ss_pred             cceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE
Confidence            456666666666677543  25688999999999999999999999999999999999999999888 89998877653

>KOG1188|consensus

Probab=99.42  E-value=6.8e-12  Score=78.31  Aligned_cols=123  Identities=17%  Similarity=0.275  Sum_probs=87.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeec--CCC-CCeEEEEec-----------------------Cccccc-----ccCCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFK--PHT-ADVRSIHLD-----------------------HYTTEA-----GTRQGS   49 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~--~~~-~~i~~~~~~-----------------------~~~~~~-----~~~~~~   49 (125)
                      +.+++.||+|++||++.......+.  .+. .+..++..+                       -....+     ...|..
T Consensus        87 v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D  166 (376)
T KOG1188|consen   87 VISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND  166 (376)
T ss_pred             eEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC
Confidence            4689999999999999865433332  222 233344332                       111111     125778


Q ss_pred             CeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCc---eeEEeCCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCCCCC
Q psy14458         50 PVSALCVDPSG-RLMVSGHEDSSCVLYDIRGSR---PLQTFKPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        50 ~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      -|+++.|+|+. +++++|+.||.+.+||+....   .+...-.|...|.++.|..++ +-|.+-++.++..+|++..+.
T Consensus       167 DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  167 DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             cceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            99999999976 899999999999999997642   233333477889999998876 458888999999999997653

>KOG0321|consensus

Probab=99.41  E-value=1.1e-12  Score=87.31  Aligned_cols=108  Identities=24%  Similarity=0.322  Sum_probs=82.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |+.+.+||.|.++|.+...-.  +.            .........|...|..+.|-|....|++++.|.++++||+.+.
T Consensus        67 LavadE~G~i~l~dt~~~~fr--~e------------e~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   67 LAVADEDGGIILFDTKSIVFR--LE------------ERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             EEEecCCCceeeecchhhhcc--hh------------hhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence            467788899999987643211  00            0011112234478889999997788999999999999999998


Q ss_pred             ceeEE--eCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCC
Q psy14458         81 RPLQT--FKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~--~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +....  +.+|...|.+++|.| |...+++|+.||.|.+||++-.
T Consensus       133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n  177 (720)
T KOG0321|consen  133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN  177 (720)
T ss_pred             eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence            77665  778999999999999 5678899999999999999743

>KOG0771|consensus

Probab=99.41  E-value=4.4e-12  Score=80.65  Aligned_cols=72  Identities=32%  Similarity=0.517  Sum_probs=64.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC-CCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ..|++++++++|++++.|+.+|.|-+++..+.+.++..+ .|...|+.+.|+|+.+.+++.+.|....+.-+.
T Consensus       282 ~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  282 KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            478999999999999999999999999999988777664 899999999999999999998888887776553

>KOG2055|consensus

Probab=99.39  E-value=1.3e-11  Score=79.74  Aligned_cols=121  Identities=12%  Similarity=0.208  Sum_probs=97.5

Q ss_pred             CeeecCCCeEEEEECCC--CcceeeecCCCCCeEEEEecCccccc--c------------------------cCCCCCeE
Q psy14458          1 MVSGHEDSSCVLYDIRG--SRPLQTFKPHTADVRSIHLDHYTTEA--G------------------------TRQGSPVS   52 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~--~------------------------~~~~~~i~   52 (125)
                      |++++.|+.+++|.+..  .+.++.+.-...||.+..|.+.....  .                        ......+.
T Consensus       228 llvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e  307 (514)
T KOG2055|consen  228 LLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSME  307 (514)
T ss_pred             EEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhh
Confidence            57899999999999864  34455555566778777775432200  0                        01234678


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         53 ALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ...+++++++++..+..|.|++....+++.+.+++ -.+.|..+.|+.|++.|++++++|.|.+||++..
T Consensus       308 ~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~  376 (514)
T KOG2055|consen  308 RFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN  376 (514)
T ss_pred             eeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCc
Confidence            88899999999999999999999999999999888 6788999999999999999999999999999875

>KOG1007|consensus

Probab=99.38  E-value=6e-12  Score=77.32  Aligned_cols=104  Identities=21%  Similarity=0.357  Sum_probs=75.9

Q ss_pred             CCCeEEEEECCCCcc-eeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCce
Q psy14458          6 EDSSCVLYDIRGSRP-LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP--SGRLMVSGHEDSSCVLYDIRGSRP   82 (125)
Q Consensus         6 ~d~~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~d~~~~~~   82 (125)
                      .|+.|.+|++..++. ...+.....               ..+....++-+|+|  +++.+++. .++++..||+++..+
T Consensus       142 ~dn~i~l~~l~ess~~vaev~ss~s---------------~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~  205 (370)
T KOG1007|consen  142 DDNNIVLWSLDESSKIVAEVLSSES---------------AEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK  205 (370)
T ss_pred             ccCceEEEEcccCcchheeeccccc---------------ccccceecccccCCCCccceEEEe-CCCcEEEEEccchhh
Confidence            467777888766554 233221110               01125677888999  45666665 689999999999888


Q ss_pred             eEEeC-CCCCceeEEEEccCCC-eEEEeecCCeEEEEeCCCCCCC
Q psy14458         83 LQTFK-PHTADVRSIRFSPSAY-YLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        83 ~~~~~-~~~~~v~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      ...++ +|...|+.+.|+|+.+ +|++|+.|+.+++||.|....|
T Consensus       206 ~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p  250 (370)
T KOG1007|consen  206 NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP  250 (370)
T ss_pred             hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc
Confidence            77776 7889999999999765 6677889999999999976554

>KOG2106|consensus

Probab=99.36  E-value=4.9e-11  Score=78.06  Aligned_cols=76  Identities=17%  Similarity=0.365  Sum_probs=53.7

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc--------------------------------------CCCceeEEeC
Q psy14458         46 RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDI--------------------------------------RGSRPLQTFK   87 (125)
Q Consensus        46 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~--------------------------------------~~~~~~~~~~   87 (125)
                      .|+.....++.+|+.+++++++.|+.+++|+-                                      .+...+. +.
T Consensus       366 gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~-~~  444 (626)
T KOG2106|consen  366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVT-IH  444 (626)
T ss_pred             ecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEE-EE
Confidence            45556666666666666666666666666662                                      2322222 22


Q ss_pred             CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         88 PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        88 ~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ..+.++++++|+|+|.+++.|+.|+.|++|.+...
T Consensus       445 ~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  445 TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence            23678999999999999999999999999987643

>KOG1034|consensus

Probab=99.36  E-value=2.1e-12  Score=80.33  Aligned_cols=100  Identities=19%  Similarity=0.231  Sum_probs=80.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      +++++.|.+|++||++++.++..|.+-.+                 |...|.++.|++++.++++++.|.++++|++...
T Consensus       151 vls~SkD~svRlwnI~~~~Cv~VfGG~eg-----------------HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  151 VLSASKDHSVRLWNIQTDVCVAVFGGVEG-----------------HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             EEEecCCceEEEEeccCCeEEEEeccccc-----------------ccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            47999999999999999999998875321                 2278899999999999999999999999999731


Q ss_pred             c------e-------------------eE---EeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         81 R------P-------------------LQ---TFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        81 ~------~-------------------~~---~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      +      +                   +-   +-..|.+.|-|++|  =|+++++-+-++.|..|-.
T Consensus       214 ~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  214 EFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKP  278 (385)
T ss_pred             HHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--HhhheeecccCceEEEEec
Confidence            1      0                   01   11247788888888  5679999999999999976

>KOG2445|consensus

Probab=99.36  E-value=5.9e-11  Score=73.49  Aligned_cols=101  Identities=13%  Similarity=0.245  Sum_probs=76.0

Q ss_pred             CeeecCCCeEEEEECCCCc----ceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECC--CCCEEEEEeCCCcEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSR----PLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP--SGRLMVSGHEDSSCVL   74 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~   74 (125)
                      ++||+.|++|+|||.+...    +...-+.|.                    ..|..+.|-+  .|..+++++.|+++.|
T Consensus        28 mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~--------------------~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   28 MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD--------------------GSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             eeeccCCCcEEEEeccCCCCceEEeeeEEecC--------------------CcEEEEEecCccccceEEEEecCCceee
Confidence            5899999999999975443    333445566                    5566666654  4789999999999999


Q ss_pred             EEcCCC---------ceeEEeCCCCCceeEEEEcc--CCCeEEEeecCCeEEEEeCCC
Q psy14458         75 YDIRGS---------RPLQTFKPHTADVRSIRFSP--SAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        75 ~d~~~~---------~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      |.-...         .....+...+..|..+.|.|  -|-.+++++.||++++|+.-.
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d  145 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD  145 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence            986221         12334555677899999999  578899999999999998643

>KOG2139|consensus

Probab=99.35  E-value=4.5e-11  Score=75.47  Aligned_cols=118  Identities=14%  Similarity=0.237  Sum_probs=88.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecC-CCCCeEEEEecCcccc--------------------------ccc--------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKP-HTADVRSIHLDHYTTE--------------------------AGT--------   45 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~--------------------------~~~--------   45 (125)
                      |+.+.+|-.|++||-.. ++...++. ....|.++.|.+....                          ...        
T Consensus       113 fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~  191 (445)
T KOG2139|consen  113 FAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQ  191 (445)
T ss_pred             hhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhhee
Confidence            57788999999999765 55555543 4668888888642110                          000        


Q ss_pred             -CCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         46 -RQGSPVSALCVDPSGRLMVSGH-EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        46 -~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                       .....|+++.|.+++..+++++ .+..|.+||..++..+-.....-+.++-+.|+||+.++.+++-|+..++|+.
T Consensus       192 ~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  192 DPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             CCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence             1125799999999999998887 4566999999998765544445567888999999999999999999999954

>KOG1009|consensus

Probab=99.33  E-value=4.8e-12  Score=80.42  Aligned_cols=113  Identities=18%  Similarity=0.290  Sum_probs=84.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecC---cccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH---YTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDI   77 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~   77 (125)
                      |++|+.++.|.+|-...- .+.  ....    ....+.   ........|.+.+..++|+|++.++++++.|+.+++||+
T Consensus        80 LASg~D~g~v~lWk~~~~-~~~--~~d~----e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv  152 (434)
T KOG1009|consen   80 LASGGDGGEVFLWKQGDV-RIF--DADT----EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV  152 (434)
T ss_pred             eeecCCCceEEEEEecCc-CCc--cccc----hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe
Confidence            589999999999986521 100  0000    000000   000111224488999999999999999999999999999


Q ss_pred             CCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         78 RGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ..++....+..|+..|..++|.|..+++++-+.|+..+.+.+.
T Consensus       153 ~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  153 HAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             ccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence            9999999999999999999999999999999999877666554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.32  E-value=1.5e-10  Score=74.56  Aligned_cols=98  Identities=32%  Similarity=0.573  Sum_probs=82.4

Q ss_pred             cCCCeEEEEECCC-CcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCce
Q psy14458          5 HEDSSCVLYDIRG-SRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHE-DSSCVLYDIRGSRP   82 (125)
Q Consensus         5 ~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~   82 (125)
                      ..|+.+.+|+... ......+..|.                    ..+..++++|++..++.++. ++.+++|+...+..
T Consensus       131 ~~d~~~~~~~~~~~~~~~~~~~~~~--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (466)
T COG2319         131 SLDGTVKLWDLSTPGKLIRTLEGHS--------------------ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP  190 (466)
T ss_pred             CCCccEEEEEecCCCeEEEEEecCc--------------------ccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce
Confidence            4488899999887 56666666676                    77889999999998888885 99999999998888


Q ss_pred             eEEeCCCCCceeEEEEccCCC-eEEEeecCCeEEEEeCCCC
Q psy14458         83 LQTFKPHTADVRSIRFSPSAY-YLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        83 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~  122 (125)
                      +..+..|...|.++.|+|++. .+++++.|+.+.+||.+.+
T Consensus       191 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~  231 (466)
T COG2319         191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG  231 (466)
T ss_pred             EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence            888888999999999999987 5555589999999987743

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.31  E-value=1.2e-11  Score=54.98  Aligned_cols=38  Identities=29%  Similarity=0.598  Sum_probs=35.9

Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      +++..+.+|.+.|.+++|+|++.++++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1310|consensus

Probab=99.29  E-value=1.7e-11  Score=81.04  Aligned_cols=102  Identities=21%  Similarity=0.365  Sum_probs=84.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeec-CCCCCeEEEEecCcccccccCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEEc
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS--GRLMVSGHEDSSCVLYDI   77 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~d~   77 (125)
                      |++|+.|..+.|||....+.+..+. +|.                    ..|-++.|-|.  ...+++|..|..|+++|+
T Consensus        65 L~SGSDD~r~ivWd~~~~KllhsI~TgHt--------------------aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl  124 (758)
T KOG1310|consen   65 LASGSDDTRLIVWDPFEYKLLHSISTGHT--------------------ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL  124 (758)
T ss_pred             EeecCCcceEEeecchhcceeeeeecccc--------------------cceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence            6899999999999998878777664 566                    67778888884  578899999999999999


Q ss_pred             CC----------CceeEEeCCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCCCC
Q psy14458         78 RG----------SRPLQTFKPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        78 ~~----------~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ..          .+....+..|...|..++-.|++ ..+.++++||+|+-+|++..
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence            74          23455566788999999999987 78899999999999999863

>KOG2055|consensus

Probab=99.29  E-value=6.3e-11  Score=76.62  Aligned_cols=72  Identities=18%  Similarity=0.278  Sum_probs=63.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCcee--EEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVR--SIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ..+..++|+.+++.++..+.+|.|++||++...+++.+. ..+.|.  +++.++++.++++|+..|.+-|||.++
T Consensus       345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~-D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV-DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe-ecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence            678999999999999999999999999999999888887 445554  577778999999999999999999654

>KOG0771|consensus

Probab=99.28  E-value=1.2e-11  Score=78.67  Aligned_cols=70  Identities=17%  Similarity=0.308  Sum_probs=65.5

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         52 SALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .+++++.++..+++++.||.+|+|++...+.+.....|.+.|.++.|+|||++|++-+.| ..+||+.+++
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g  217 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG  217 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence            789999999999999999999999988877777777899999999999999999999999 8999999887

>KOG2919|consensus

Probab=99.28  E-value=6.3e-11  Score=73.92  Aligned_cols=75  Identities=24%  Similarity=0.388  Sum_probs=60.0

Q ss_pred             CCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCC-CceeEEeCCCCC-ceeE--EEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         47 QGSPVSALCVDPSGRLMVSGHE-DSSCVLYDIRG-SRPLQTFKPHTA-DVRS--IRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        47 ~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~d~~~-~~~~~~~~~~~~-~v~~--~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      |+..|+-++|.++|+.+++|.. +-.|..||++. ..++..+..|.. ....  +...|++++|++|+.||.|++||+++
T Consensus       249 h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  249 HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            3488999999999999998875 45699999987 456666765644 3333  55678999999999999999999987

>KOG1963|consensus

Probab=99.28  E-value=1.9e-10  Score=78.97  Aligned_cols=79  Identities=25%  Similarity=0.454  Sum_probs=67.3

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC----CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         46 RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG----SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        46 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      .|...+++.++||+++++++|..||.|.+|.--.    ......+..|-.+|.++.|+++|.++.+|+.++.+.+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            3446689999999999999999999999997433    123455667889999999999999999999999999999988


Q ss_pred             CCC
Q psy14458        122 TMR  124 (125)
Q Consensus       122 ~~~  124 (125)
                      +.+
T Consensus       283 ~~k  285 (792)
T KOG1963|consen  283 GKK  285 (792)
T ss_pred             CCc
Confidence            754

>KOG4227|consensus

Probab=99.27  E-value=1.7e-10  Score=73.87  Aligned_cols=104  Identities=16%  Similarity=0.263  Sum_probs=87.1

Q ss_pred             CeeecCCCeEEEEECCC------CcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q psy14458          1 MVSGHEDSSCVLYDIRG------SRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVL   74 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~   74 (125)
                      |++|+.|..+++|++..      .+++.....+                   |.+.|-|++|.....++++|..+++|-.
T Consensus        71 L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~-------------------H~SNIF~L~F~~~N~~~~SG~~~~~VI~  131 (609)
T KOG4227|consen   71 LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHP-------------------HRSNIFSLEFDLENRFLYSGERWGTVIK  131 (609)
T ss_pred             EeecCCcceeeeechHHHHhhcCCCCceeccCc-------------------cccceEEEEEccCCeeEecCCCcceeEe
Confidence            68999999999999853      3455544322                   2278899999999999999999999999


Q ss_pred             EEcCCCceeEEeCCCC---CceeEEEEccCCCeEEEeecCCeEEEEeCCCCCC
Q psy14458         75 YDIRGSRPLQTFKPHT---ADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMR  124 (125)
Q Consensus        75 ~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  124 (125)
                      .|+.+.+.+..+. |.   +.|.++..+|..+.+++.+.++.+.+||.+....
T Consensus       132 HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~  183 (609)
T KOG4227|consen  132 HDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN  183 (609)
T ss_pred             eecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence            9999999888776 44   4899999999989999999999999999987764

>KOG3914|consensus

Probab=99.26  E-value=5.4e-11  Score=75.53  Aligned_cols=79  Identities=20%  Similarity=0.305  Sum_probs=67.0

Q ss_pred             cCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC-CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         45 TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        45 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..|-+.++.++++|++.++++++.|+.|++-.....-.+..|. +|+.-|..++.-++ ..|+++++|+++++||+.++.
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCC
Confidence            3455899999999999999999999999998776555566665 69999999998765 469999999999999999876


Q ss_pred             C
Q psy14458        124 R  124 (125)
Q Consensus       124 ~  124 (125)
                      .
T Consensus       227 ~  227 (390)
T KOG3914|consen  227 L  227 (390)
T ss_pred             c
Confidence            4

>KOG1524|consensus

Probab=99.26  E-value=7.5e-11  Score=77.88  Aligned_cols=120  Identities=15%  Similarity=0.233  Sum_probs=87.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc---------------------cCCCCCeEEEEECCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG---------------------TRQGSPVSALCVDPS   59 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------------------~~~~~~i~~~~~~~~   59 (125)
                      |+.++.||++.+.+ +.++....+..|.+.+.+-+|++......                     .....+|.|++|.|+
T Consensus        78 ~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~  156 (737)
T KOG1524|consen   78 LLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPN  156 (737)
T ss_pred             EEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCC
Confidence            46788899888888 56777777777887777777765332221                     123356777777777


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .+.++-+ ..+.+.+-.+.....+..+++|.+-|.++.|+|...++++|++|-..++||-.+.
T Consensus       157 S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~  218 (737)
T KOG1524|consen  157 SNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA  218 (737)
T ss_pred             CCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc
Confidence            6544443 4555666666656666678899999999999999999999999999999997643

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.26  E-value=6e-10  Score=71.81  Aligned_cols=101  Identities=36%  Similarity=0.609  Sum_probs=82.6

Q ss_pred             eeecC-CCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCC
Q psy14458          2 VSGHE-DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGR-LMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         2 ~t~~~-d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~d~~~   79 (125)
                      ++++. |+.+++|++..++.+..+..|.                    ..+.+++++|++. .+++++.|+.+++||...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~  230 (466)
T COG2319         171 ASGSSLDGTIKLWDLRTGKPLSTLAGHT--------------------DPVSSLAFSPDGGLLIASGSSDGTIRLWDLST  230 (466)
T ss_pred             EecCCCCCceEEEEcCCCceEEeeccCC--------------------CceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence            34554 9999999998877777777766                    7889999999887 555558999999999887


Q ss_pred             CceeE-EeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         80 SRPLQ-TFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        80 ~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.... .+..|...+ -..|+|++..+++++.|+.+++|+++...
T Consensus       231 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         231 GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence            77777 577787765 44899999888999999999999988654

>KOG2096|consensus

Probab=99.25  E-value=6.1e-10  Score=69.58  Aligned_cols=71  Identities=13%  Similarity=0.308  Sum_probs=59.4

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      .-.+-.+-....+.++++++.|..|.+|+++ ++.+.++..........+.+|+|+++++++..--+++|+.
T Consensus       187 ~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~  257 (420)
T KOG2096|consen  187 QVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEP  257 (420)
T ss_pred             ccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEE
Confidence            3445556666678899999999999999998 8888888765556677889999999999999999999985

>KOG0280|consensus

Probab=99.23  E-value=2.6e-10  Score=70.32  Aligned_cols=80  Identities=28%  Similarity=0.318  Sum_probs=64.9

Q ss_pred             CCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCC-CceeEE-eCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCC
Q psy14458         46 RQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRG-SRPLQT-FKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        46 ~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~-~~~~~~-~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      .|.......+|+... +.+.+|++|+.+..||++. ++.+.. .+.|...|.+|.-+| .+.+|++|+.|..|++||.|+
T Consensus       163 ~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  163 VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN  242 (339)
T ss_pred             ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence            455677777887654 7889999999999999994 444444 446888899998887 678999999999999999998


Q ss_pred             CCCC
Q psy14458        122 TMRP  125 (125)
Q Consensus       122 ~~~~  125 (125)
                      ..+|
T Consensus       243 m~kP  246 (339)
T KOG0280|consen  243 MGKP  246 (339)
T ss_pred             ccCc
Confidence            7765

>KOG1310|consensus

Probab=99.22  E-value=9.6e-11  Score=77.60  Aligned_cols=78  Identities=28%  Similarity=0.435  Sum_probs=70.6

Q ss_pred             ccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC-CCCCceeEEEEcc--CCCeEEEeecCCeEEEEeCC
Q psy14458         44 GTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIRFSP--SAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        44 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ..+|..-|+|+.|+.+|.+|++|++|-.+.|||.-..++++.+. +|.+.|.++.|-|  +.+++++|.+|..|+++|+.
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~  125 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD  125 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence            34566889999999999999999999999999998888888876 8999999999999  66899999999999999997


Q ss_pred             C
Q psy14458        121 G  121 (125)
Q Consensus       121 ~  121 (125)
                      .
T Consensus       126 ~  126 (758)
T KOG1310|consen  126 S  126 (758)
T ss_pred             c
Confidence            4

>KOG2048|consensus

Probab=99.22  E-value=8.4e-10  Score=74.29  Aligned_cols=101  Identities=13%  Similarity=0.159  Sum_probs=83.4

Q ss_pred             CeeecCCCeEEEEECCCCcc-eeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRP-LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      ||.+-.||.|.+|+++.+-. ...+.++..                   ..|.+++|++ +..|++.+.+|.|..||+.+
T Consensus        40 lAvsRt~g~IEiwN~~~~w~~~~vi~g~~d-------------------rsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   40 LAVSRTDGNIEIWNLSNNWFLEPVIHGPED-------------------RSIESLAWAE-GGRLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             eeeeccCCcEEEEccCCCceeeEEEecCCC-------------------CceeeEEEcc-CCeEEeecCCceEEEEeccc
Confidence            56788899999999987644 334555442                   6799999995 45577777999999999999


Q ss_pred             CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      .+....+....+.+++++.+|.+..++.||.||.+..++...
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p  141 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP  141 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCC
Confidence            999999998889999999999999999999999777766544

>KOG0642|consensus

Probab=99.22  E-value=1.4e-10  Score=76.55  Aligned_cols=74  Identities=23%  Similarity=0.450  Sum_probs=69.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ..+..+.++|++...+++..+..|+++|..+++.+....+|...|+++++.|+|-+++++++|+.+.+|.+...
T Consensus       490 ~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  490 PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             CccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence            56788999999999999999999999999999999999999999999999999999999999999999988543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.22  E-value=1.4e-09  Score=64.88  Aligned_cols=71  Identities=23%  Similarity=0.525  Sum_probs=57.0

Q ss_pred             CCeEEEEECCCCCEEEE--EeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec---CCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVS--GHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY---DNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~--~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~  122 (125)
                      .+|.+++|+|+++.++.  |..++.+.+||++ .+.+..+.  ...++.+.|+|+|++++.++.   .|.+.+||+++.
T Consensus        60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             CceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            46999999999988654  4466789999996 66666664  456789999999999999874   467999999854

>KOG1587|consensus

Probab=99.20  E-value=1.3e-10  Score=78.40  Aligned_cols=99  Identities=16%  Similarity=0.278  Sum_probs=78.6

Q ss_pred             eeecCCCeEEEEECC-CCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCC
Q psy14458          2 VSGHEDSSCVLYDIR-GSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~   79 (125)
                      ++++ |-.+++|.-. ...++..+..+.                    ..+++++|||.. ..|+++..+|.+.+||+..
T Consensus       415 ls~g-DW~vriWs~~~~~~Pl~~~~~~~--------------------~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~  473 (555)
T KOG1587|consen  415 LSVG-DWTVRIWSEDVIASPLLSLDSSP--------------------DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ  473 (555)
T ss_pred             eeec-cceeEeccccCCCCcchhhhhcc--------------------ceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence            4555 8889999877 455666665555                    568999999987 6778889999999999975


Q ss_pred             --CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         80 --SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        80 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                        ..++.+..........+.|+++|+++++|...|.+.++++..
T Consensus       474 ~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  474 DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence              345665555556667889999999999999999999999963

>KOG0290|consensus

Probab=99.19  E-value=9.7e-10  Score=67.87  Aligned_cols=109  Identities=12%  Similarity=0.237  Sum_probs=79.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecC---CCCCeEEEEecC-------------------------cccccccCCCCCeE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKP---HTADVRSIHLDH-------------------------YTTEAGTRQGSPVS   52 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~---~~~~i~~~~~~~-------------------------~~~~~~~~~~~~i~   52 (125)
                      |++.+.||++++||++.......+..   ...+..-+.|+.                         .......+|...|+
T Consensus       212 FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VN  291 (364)
T KOG0290|consen  212 FASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVN  291 (364)
T ss_pred             EEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCccccc
Confidence            68999999999999997654333322   134555666643                         22334458899999


Q ss_pred             EEEECCCC-CEEEEEeCCCcEEEEEcCCCc------eeEEeCCCCCceeEEEEcc-CCCeEEEeec
Q psy14458         53 ALCVDPSG-RLMVSGHEDSSCVLYDIRGSR------PLQTFKPHTADVRSIRFSP-SAYYLLTGGY  110 (125)
Q Consensus        53 ~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~  110 (125)
                      .++|.|.. ..+.++++|..+.+||+....      ++..+. ..++|+.+.|+| .+.+++.+..
T Consensus       292 gIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  292 GIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             ceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence            99999975 889999999999999997532      233333 567899999998 5677777654

>KOG4328|consensus

Probab=99.19  E-value=3.4e-10  Score=73.24  Aligned_cols=106  Identities=18%  Similarity=0.304  Sum_probs=76.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC--
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR--   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~--   78 (125)
                      |+|++.|++.+|||++.......      |          +.....|...|.+..|||.+-.+++.+.|..|+|||..  
T Consensus       338 laT~s~D~T~kIWD~R~l~~K~s------p----------~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~  401 (498)
T KOG4328|consen  338 LATASLDQTAKIWDLRQLRGKAS------P----------FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCI  401 (498)
T ss_pred             eeecccCcceeeeehhhhcCCCC------c----------ceecccccceeeeeEEcCCCCceEeeccCCceEEeecccc
Confidence            68999999999999987533221      0          11112233789999999998779999999999999984  


Q ss_pred             --CCceeEEeCCCCC----ce--eEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         79 --GSRPLQTFKPHTA----DV--RSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        79 --~~~~~~~~~~~~~----~v--~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                        .-++...+. |..    +.  ....|.|+..+|++|..-..|-++|-..+.
T Consensus       402 sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  402 SAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             cccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence              334444443 332    22  245799999999999998889999876553

>KOG1063|consensus

Probab=99.18  E-value=1.6e-10  Score=77.99  Aligned_cols=78  Identities=27%  Similarity=0.435  Sum_probs=69.8

Q ss_pred             cCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         45 TRQGSPVSALCVDPSGRLMVSGHED-----SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        45 ~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      ..|+..|.+++.+|+++++++++..     ..|++|+..+-.....+..|.-.|+.+.|+||+++|++.|.|+++.+|..
T Consensus       522 YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~  601 (764)
T KOG1063|consen  522 YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV  601 (764)
T ss_pred             ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence            4788999999999999999999843     45899998887777788899999999999999999999999999999987


Q ss_pred             CCC
Q psy14458        120 QGT  122 (125)
Q Consensus       120 ~~~  122 (125)
                      +..
T Consensus       602 ~~~  604 (764)
T KOG1063|consen  602 QED  604 (764)
T ss_pred             ecc
Confidence            654

>KOG2321|consensus

Probab=99.17  E-value=5.8e-10  Score=74.18  Aligned_cols=75  Identities=17%  Similarity=0.385  Sum_probs=64.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC------CCCC-----ceeEEEEccCCCeEEEeecCCeEEEE
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK------PHTA-----DVRSIRFSPSAYYLLTGGYDNKLVLT  117 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~~~~~~~d~~i~~~  117 (125)
                      ..++++.+++...++++|+.+|.|..||.++...+..+.      .|.+     .|+++.|+-+|-.+++|+.+|.+.+|
T Consensus       176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iy  255 (703)
T KOG2321|consen  176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIY  255 (703)
T ss_pred             ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEE
Confidence            788999999999999999999999999999876555444      2222     49999999999999999999999999


Q ss_pred             eCCCCC
Q psy14458        118 DLQGTM  123 (125)
Q Consensus       118 ~~~~~~  123 (125)
                      |+++..
T Consensus       256 DLRa~~  261 (703)
T KOG2321|consen  256 DLRASK  261 (703)
T ss_pred             EcccCC
Confidence            999865

>KOG1272|consensus

Probab=99.17  E-value=1.5e-10  Score=75.06  Aligned_cols=94  Identities=24%  Similarity=0.439  Sum_probs=75.5

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      -+|...|+|.+|......++..+..|.                    .+|.++++.++|.++++.+.|..++|||++.-.
T Consensus       267 h~GhsnGtVSlWSP~skePLvKiLcH~--------------------g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  267 HLGHSNGTVSLWSPNSKEPLVKILCHR--------------------GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             EEcCCCceEEecCCCCcchHHHHHhcC--------------------CCcceEEECCCCcEEeecccccceeEeeecccc
Confidence            368889999999999888888888888                    788999999999999999999999999999877


Q ss_pred             eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         82 PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      .+.+... .-....+++|..|  +++.+....+.+|-
T Consensus       327 ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  327 QLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             ccceeec-CCCcccccccccc--ceeeecCCeeeeeh
Confidence            6666653 4455677786554  44555556688883

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.14  E-value=4e-09  Score=68.67  Aligned_cols=100  Identities=18%  Similarity=0.293  Sum_probs=76.7

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      ++-..+++|.+.|..+.+.+..+....                    ..-..+.++|++++++..+.||.|.++|+.+++
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~--------------------~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~   69 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGG--------------------APHAGLKFSPDGRYLYVANRDGTVSVIDLATGK   69 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-ST--------------------TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCC--------------------CceeEEEecCCCCEEEEEcCCCeEEEEECCccc
Confidence            356678999999999998888887443                    233457789999999999999999999999999


Q ss_pred             eeEEeCCCCCceeEEEEccCCCeEEEee-cCCeEEEEeCCCC
Q psy14458         82 PLQTFKPHTADVRSIRFSPSAYYLLTGG-YDNKLVLTDLQGT  122 (125)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~  122 (125)
                      .+..++. ......+++++||+++++++ .++.+.++|.++.
T Consensus        70 ~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl  110 (369)
T PF02239_consen   70 VVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL  110 (369)
T ss_dssp             EEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT-
T ss_pred             EEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccc
Confidence            9988874 44467899999999998876 5899999998775

...

>KOG1523|consensus

Probab=99.14  E-value=9.2e-10  Score=68.59  Aligned_cols=122  Identities=17%  Similarity=0.255  Sum_probs=96.0

Q ss_pred             CeeecCCCeEEEEECCCC---cceeeecCCCCCeEEEEecCccccccc--------------------------CCCCCe
Q psy14458          1 MVSGHEDSSCVLYDIRGS---RPLQTFKPHTADVRSIHLDHYTTEAGT--------------------------RQGSPV   51 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~--------------------------~~~~~i   51 (125)
                      |++++.|..-++|....+   ++.-.+..+.+..+++.|.+.......                          ...+.|
T Consensus        70 Ivtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv  149 (361)
T KOG1523|consen   70 IVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV  149 (361)
T ss_pred             eeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence            578999999999998433   455566668889999999875443332                          223678


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCC------------------CceeEEeCCCCCceeEEEEccCCCeEEEeecCCe
Q psy14458         52 SALCVDPSGRLMVSGHEDSSCVLYDIRG------------------SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNK  113 (125)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~  113 (125)
                      ++++|+|+.-+++.|+.|+..+++...-                  ++.+.++....+.|+.+.|+|+|..|+-.++|.+
T Consensus       150 ~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~  229 (361)
T KOG1523|consen  150 TSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST  229 (361)
T ss_pred             eeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc
Confidence            9999999999999999999999988631                  2344455456788999999999999999999999


Q ss_pred             EEEEeCCCC
Q psy14458        114 LVLTDLQGT  122 (125)
Q Consensus       114 i~~~~~~~~  122 (125)
                      +.+-|-...
T Consensus       230 v~~~da~~p  238 (361)
T KOG1523|consen  230 VSFVDAAGP  238 (361)
T ss_pred             eEEeecCCC
Confidence            999887655

>KOG1517|consensus

Probab=99.14  E-value=1.3e-09  Score=76.97  Aligned_cols=103  Identities=19%  Similarity=0.333  Sum_probs=76.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP-SGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |++++.-..|+|||+...+....+.....                   .-++++.-+. .++.++.|..||.|++||.+.
T Consensus      1180 Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-------------------t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~ 1240 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQVVADIPYGSS-------------------TLVTALSADLVHGNIIAAGFADGSVRVYDRRM 1240 (1387)
T ss_pred             EEecCCeeEEEEEecccceeEeecccCCC-------------------ccceeecccccCCceEEEeecCCceEEeeccc
Confidence            34556678899999987666555442211                   3345444333 369999999999999999887


Q ss_pred             Cc---eeEEeCCCCCc--eeEEEEccCCC-eEEEeecCCeEEEEeCCCC
Q psy14458         80 SR---PLQTFKPHTAD--VRSIRFSPSAY-YLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~---~~~~~~~~~~~--v~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~  122 (125)
                      ..   .+...+.|...  |.++.+.++|- .+++|+.||.|++||+|..
T Consensus      1241 a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1241 APPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             CCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            43   46667778877  99999998764 5999999999999999974

>KOG0322|consensus

Probab=99.12  E-value=8.6e-11  Score=71.49  Aligned_cols=58  Identities=24%  Similarity=0.410  Sum_probs=54.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~   78 (125)
                      |||+++|++|+||+-+++.++..++-|.                    ..+++++|+|+.+.++.++.|++|.+|++.
T Consensus       266 lATAGWD~RiRVyswrtl~pLAVLkyHs--------------------agvn~vAfspd~~lmAaaskD~rISLWkLY  323 (323)
T KOG0322|consen  266 LATAGWDHRIRVYSWRTLNPLAVLKYHS--------------------AGVNAVAFSPDCELMAAASKDARISLWKLY  323 (323)
T ss_pred             EeecccCCcEEEEEeccCCchhhhhhhh--------------------cceeEEEeCCCCchhhhccCCceEEeeecC
Confidence            5899999999999999999999999888                    789999999999999999999999999863

>KOG0650|consensus

Probab=99.12  E-value=3e-10  Score=75.82  Aligned_cols=97  Identities=22%  Similarity=0.420  Sum_probs=80.1

Q ss_pred             CeeecCCCeEEEEECCCC-cceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGS-RPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |+.|+.|++++.||+.-. ++.+.+..|.                    ..++.+++++...++++|+.||++.|+--+-
T Consensus       622 li~gs~d~k~~WfDldlsskPyk~lr~H~--------------------~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V  681 (733)
T KOG0650|consen  622 LILGSYDKKMCWFDLDLSSKPYKTLRLHE--------------------KAVRSVAFHKRYPLFASGSDDGTVIVFHGMV  681 (733)
T ss_pred             EEEecCCCeeEEEEcccCcchhHHhhhhh--------------------hhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence            467999999999999754 5666777777                    7888999999999999999999999886542


Q ss_pred             ------Cc---eeEEeCCCCCc----eeEEEEccCCCeEEEeecCCeEEEE
Q psy14458         80 ------SR---PLQTFKPHTAD----VRSIRFSPSAYYLLTGGYDNKLVLT  117 (125)
Q Consensus        80 ------~~---~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~d~~i~~~  117 (125)
                            ..   ++..+++|...    |....|+|..-+++++++|++|++|
T Consensus       682 Y~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  682 YNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence                  12   35556677655    8888999999999999999999998

>KOG4378|consensus

Probab=99.12  E-value=2.4e-10  Score=74.97  Aligned_cols=121  Identities=10%  Similarity=0.155  Sum_probs=88.3

Q ss_pred             ecCCCeEEEEECCCCcceeeecCC--CCCeEEEEecCcccccc-------------------------cCCCCCeEEEEE
Q psy14458          4 GHEDSSCVLYDIRGSRPLQTFKPH--TADVRSIHLDHYTTEAG-------------------------TRQGSPVSALCV   56 (125)
Q Consensus         4 ~~~d~~i~v~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~-------------------------~~~~~~i~~~~~   56 (125)
                      ++....+++||+........+..+  ...+.+++|........                         ...+..-.|++.
T Consensus         8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~   87 (673)
T KOG4378|consen    8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVAC   87 (673)
T ss_pred             eccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhh
Confidence            334446999999766544443322  23477777765432111                         012234456666


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCC
Q psy14458         57 DPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMR  124 (125)
Q Consensus        57 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  124 (125)
                      .....++++|+..+.|+|||++.....+.++.|...|+++.|+-...+|++++..|.|.+..+.++.+
T Consensus        88 ~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~  155 (673)
T KOG4378|consen   88 ASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK  155 (673)
T ss_pred             hhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc
Confidence            66678999999999999999996667777889999999999999999999999999999999887654

>KOG1538|consensus

Probab=99.11  E-value=4.3e-10  Score=76.29  Aligned_cols=71  Identities=17%  Similarity=0.352  Sum_probs=65.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ..|..++|-|+|..++.+ .+..+.+||...|..+.++++|+..|.|++|+.||+.+++|+.|..+.+|+-+
T Consensus        13 hci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k   83 (1081)
T KOG1538|consen   13 HCINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK   83 (1081)
T ss_pred             cchheeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence            368899999999888777 46679999999999999999999999999999999999999999999999754

>KOG1523|consensus

Probab=99.11  E-value=1.5e-09  Score=67.68  Aligned_cols=74  Identities=11%  Similarity=0.189  Sum_probs=63.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-C--ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG-S--RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ...+++++|+|..+.|++++.|..-++|.... +  ++...+..++...+++.|+|..+.|++|+..+.|.+|-++.
T Consensus        55 d~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~  131 (361)
T KOG1523|consen   55 DKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ  131 (361)
T ss_pred             CcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence            38899999999999999999999999999843 3  34444556899999999999999999999999999997754

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.10  E-value=4.1e-10  Score=49.87  Aligned_cols=28  Identities=25%  Similarity=0.616  Sum_probs=27.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEE
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYD   76 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d   76 (125)
                      ..|.+++|+|++.++++++.|+.|++||
T Consensus        12 ~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   12 SSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CcEEEEEEecccccceeeCCCCEEEEEC
Confidence            8899999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1240|consensus

Probab=99.09  E-value=6.8e-09  Score=74.29  Aligned_cols=76  Identities=22%  Similarity=0.461  Sum_probs=62.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC-CCCCceeEEEEccC---CCeEEEee--cCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIRFSPS---AYYLLTGG--YDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~~~~~~--~d~~i~~~~~~~~  122 (125)
                      +.|++++.+|.++.+++|+..|.+-+||++-+.++.++. ++..++.++..+|-   ....++++  ..+.+.+|++.++
T Consensus      1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            579999999999999999999999999999998888876 45678888888772   24555544  5788999999887


Q ss_pred             CC
Q psy14458        123 MR  124 (125)
Q Consensus       123 ~~  124 (125)
                      ..
T Consensus      1276 ~~ 1277 (1431)
T KOG1240|consen 1276 LR 1277 (1431)
T ss_pred             cc
Confidence            53

>KOG3881|consensus

Probab=99.08  E-value=2.2e-09  Score=68.32  Aligned_cols=112  Identities=19%  Similarity=0.289  Sum_probs=86.9

Q ss_pred             CeeecCC--CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEE
Q psy14458          1 MVSGHED--SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS--GRLMVSGHEDSSCVLYD   76 (125)
Q Consensus         1 l~t~~~d--~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~d   76 (125)
                      +++|+..  ..+.+||+...+++..-+.-...-..+.           -.-+++++.|-+.  ...|++++.-+.+++||
T Consensus       164 va~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~Lr-----------VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YD  232 (412)
T KOG3881|consen  164 VATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLR-----------VPVWITDIRFLEGSPNYKFATITRYHQVRLYD  232 (412)
T ss_pred             EecCchhcccceeeeecccceeeeeccCCCCccccce-----------eeeeeccceecCCCCCceEEEEecceeEEEec
Confidence            3678888  8899999988766554432221111111           1135677888877  68899999999999999


Q ss_pred             cCCC-ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         77 IRGS-RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        77 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+.+ +++..|.....+++++...|.++++++|..-+.+..+|++++.
T Consensus       233 t~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k  280 (412)
T KOG3881|consen  233 TRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK  280 (412)
T ss_pred             CcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce
Confidence            9875 5788888788999999999999999999999999999999875

>KOG1517|consensus

Probab=99.06  E-value=2.7e-09  Score=75.50  Aligned_cols=103  Identities=24%  Similarity=0.411  Sum_probs=78.3

Q ss_pred             CeeecCCCeEEEEECCCCcc---eeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRP---LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYD   76 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d   76 (125)
                      ++.|..||+|++||.+...+   +...+.|...                  .+|..+.+-++| ..+++|+.+|.|++||
T Consensus      1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~------------------~~Iv~~slq~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV------------------EPIVHLSLQRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred             EEEeecCCceEEeecccCCccccceeecccCCc------------------ccceeEEeecCCCcceeeeccCCeEEEEe
Confidence            57899999999999986543   4555556521                  237788888866 4599999999999999


Q ss_pred             cCCCc--eeEEeCCCC--C-ceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         77 IRGSR--PLQTFKPHT--A-DVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        77 ~~~~~--~~~~~~~~~--~-~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++...  .......|.  + .++++..+++..++++|+. +.|.||++.+.
T Consensus      1286 lR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1286 LRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred             cccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence            98742  222233333  3 5899999999999999999 99999998754

>KOG1587|consensus

Probab=99.06  E-value=7.2e-09  Score=70.17  Aligned_cols=77  Identities=19%  Similarity=0.257  Sum_probs=62.0

Q ss_pred             CCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCce--eEEe----CCCCCceeEEEEccCCCe--EEEeecCCeEEEEeC
Q psy14458         49 SPVSALCVDPSG-RLMVSGHEDSSCVLYDIRGSRP--LQTF----KPHTADVRSIRFSPSAYY--LLTGGYDNKLVLTDL  119 (125)
Q Consensus        49 ~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~--~~~~----~~~~~~v~~~~~~~~~~~--~~~~~~d~~i~~~~~  119 (125)
                      ..++|++|+|.. .+++.|+.+|.|-+||++.+..  ...+    ..|..+|..+.|..+..-  +++++.||.|..|++
T Consensus       243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~  322 (555)
T KOG1587|consen  243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT  322 (555)
T ss_pred             CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence            789999999965 7889999999999999987654  2222    258889999999775444  999999999999998


Q ss_pred             CCCCCC
Q psy14458        120 QGTMRP  125 (125)
Q Consensus       120 ~~~~~~  125 (125)
                      +....|
T Consensus       323 ~~l~~P  328 (555)
T KOG1587|consen  323 DMLSLP  328 (555)
T ss_pred             cccccc
Confidence            876554

>KOG4547|consensus

Probab=99.02  E-value=2.1e-08  Score=66.66  Aligned_cols=121  Identities=15%  Similarity=0.138  Sum_probs=95.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecC---CCCCeEEEEecC---------------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKP---HTADVRSIHLDH---------------------------------------   38 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~---~~~~i~~~~~~~---------------------------------------   38 (125)
                      ||....||.+++||...++....|..   -.+...+..|.-                                       
T Consensus         8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~   87 (541)
T KOG4547|consen    8 FALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSV   87 (541)
T ss_pred             EeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEe
Confidence            46778899999999998887666653   233444555520                                       


Q ss_pred             -----cccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCe
Q psy14458         39 -----YTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNK  113 (125)
Q Consensus        39 -----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~  113 (125)
                           ........|...+.++.++.+...|.+++.|+.+..|+......+..+...+..+.+++++||+..+++++  ++
T Consensus        88 ~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~  165 (541)
T KOG4547|consen   88 AGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQ  165 (541)
T ss_pred             cCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ce
Confidence                 00111125668899999999889999999999999999999999999998888999999999999999887  58


Q ss_pred             EEEEeCCCCC
Q psy14458        114 LVLTDLQGTM  123 (125)
Q Consensus       114 i~~~~~~~~~  123 (125)
                      |.+||+.++.
T Consensus       166 ik~~~~~~ke  175 (541)
T KOG4547|consen  166 IKVLDIETKE  175 (541)
T ss_pred             EEEEEccCce
Confidence            9999998764

>KOG2315|consensus

Probab=99.01  E-value=2e-08  Score=66.60  Aligned_cols=112  Identities=16%  Similarity=0.285  Sum_probs=79.6

Q ss_pred             CeEEEEECCCCcceeeecCCCCCeEEEEecCccccccc---------------------CCCCCeEEEEECCCCCEEEEE
Q psy14458          8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGT---------------------RQGSPVSALCVDPSGRLMVSG   66 (125)
Q Consensus         8 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---------------------~~~~~i~~~~~~~~~~~~~~~   66 (125)
                      .++++.++....+.-.+ ...+||.++.|+........                     -...+-+++-|+|.|++++.+
T Consensus       251 q~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lA  329 (566)
T KOG2315|consen  251 QTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLA  329 (566)
T ss_pred             ceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEe
Confidence            35555565522222222 35889999999875533222                     123567889999999998776


Q ss_pred             e---CCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec------CCeEEEEeCCCC
Q psy14458         67 H---EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY------DNKLVLTDLQGT  122 (125)
Q Consensus        67 ~---~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------d~~i~~~~~~~~  122 (125)
                      +   --|.+.+||+.+.+++..+.....  +-..|+|||++|++++.      |..++||+..+.
T Consensus       330 GFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  330 GFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             ecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            5   447899999999888888875443  45789999999988764      788999987654

>KOG1538|consensus

Probab=99.01  E-value=1.4e-08  Score=69.20  Aligned_cols=118  Identities=13%  Similarity=0.189  Sum_probs=90.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeec---CCCCCeEEEEecCcc--------------------------cccccCCCCCe
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFK---PHTADVRSIHLDHYT--------------------------TEAGTRQGSPV   51 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~---~~~~~i~~~~~~~~~--------------------------~~~~~~~~~~i   51 (125)
                      |+-|..||+|.+-+. +++....+.   +...+|.+++|++..                          +......+...
T Consensus       147 lalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP  225 (1081)
T KOG1538|consen  147 LALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDP  225 (1081)
T ss_pred             EEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCc
Confidence            356777888888874 344433333   467789999886521                          11122334566


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         52 SALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      .|+.+.++|+++..|+.|+.+++|. +.|-.+.+.-....+++.+...|+++.++.|+.||+|-.|++-
T Consensus       226 ~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  226 CCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             hhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            7999999999999999999999994 6777777777678899999999999999999999999998864

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=99.00  E-value=5.4e-09  Score=69.70  Aligned_cols=73  Identities=25%  Similarity=0.276  Sum_probs=61.6

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         46 RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        46 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ..+..+.|++++|+...++.|+.||.|.+||...+.....  ...-....++|+|+|.++++|+..|.+.+||+.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            4457899999999999999999999999999876643322  234456789999999999999999999999985

>KOG1963|consensus

Probab=99.00  E-value=2.1e-08  Score=69.28  Aligned_cols=103  Identities=18%  Similarity=0.292  Sum_probs=82.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      +++|.-||+|.+|.-...      .......+.+-|+.          ..|++++|+++|.++.+|+.++.+-+|...++
T Consensus       220 ~Aa~d~dGrI~vw~d~~~------~~~~~t~t~lHWH~----------~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~  283 (792)
T KOG1963|consen  220 LAAGDSDGRILVWRDFGS------SDDSETCTLLHWHH----------DEVNSLSFSSDGAYLLSGGREGVLVLWQLETG  283 (792)
T ss_pred             EEEeccCCcEEEEecccc------ccccccceEEEecc----------cccceeEEecCCceEeecccceEEEEEeecCC
Confidence            478889999999974321      12233344455543          68999999999999999999999999999988


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ++.. +..-.+.|.++.++||+.+.+...+|..|.+..+.
T Consensus       284 ~kqf-LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~  322 (792)
T KOG1963|consen  284 KKQF-LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS  322 (792)
T ss_pred             Cccc-ccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence            7433 44467889999999999999999999999988763

>KOG4714|consensus

Probab=98.98  E-value=1.2e-09  Score=66.58  Aligned_cols=73  Identities=29%  Similarity=0.460  Sum_probs=62.8

Q ss_pred             CCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCce-eEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCC
Q psy14458         49 SPVSALCVDPSG-RLMVSGHEDSSCVLYDIRGSRP-LQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ..+++++-+|.. +.+++|+.||.+-+||.++... ...++.|+.+++.+.|+| ++.+|+++++||.+.-||-.+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            448999999965 6778899999999999998643 334568999999999999 889999999999999999764

>KOG0974|consensus

Probab=98.98  E-value=1.5e-08  Score=71.15  Aligned_cols=98  Identities=22%  Similarity=0.268  Sum_probs=77.1

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      ++|+--+.|.+|.....+....+.+|.                    ..|-.+.++.++.++++.++|.++++|++.+.+
T Consensus       149 ~~gsv~~~iivW~~~~dn~p~~l~GHe--------------------G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~  208 (967)
T KOG0974|consen  149 ASGSVFGEIIVWKPHEDNKPIRLKGHE--------------------GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE  208 (967)
T ss_pred             EeccccccEEEEeccccCCcceecccC--------------------CceEEEEEccCCcEEEEEecCcceeeeeccccc
Confidence            455566667777765322222345555                    788899999999999999999999999999877


Q ss_pred             eeE-EeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         82 PLQ-TFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        82 ~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ... ..-+|...|..++|.|+  .+++++.|-+.++|+...
T Consensus       209 ~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~  247 (967)
T KOG0974|consen  209 VLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG  247 (967)
T ss_pred             ccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence            655 34469999999999988  899999999999996543

>KOG4547|consensus

Probab=98.97  E-value=2e-08  Score=66.83  Aligned_cols=99  Identities=20%  Similarity=0.369  Sum_probs=81.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |.+++.|.++..|+....+.+...+...                    ..+.+++.+|++..+++++  +.|++||+.+.
T Consensus       117 iyS~~ad~~v~~~~~~~~~~~~~~~~~~--------------------~~~~sl~is~D~~~l~~as--~~ik~~~~~~k  174 (541)
T KOG4547|consen  117 IYSVGADLKVVYILEKEKVIIRIWKEQK--------------------PLVSSLCISPDGKILLTAS--RQIKVLDIETK  174 (541)
T ss_pred             eEecCCceeEEEEecccceeeeeeccCC--------------------CccceEEEcCCCCEEEecc--ceEEEEEccCc
Confidence            4678889999999988877777777655                    7888999999999888874  67999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccC-----CCeEEEe-ecCCeEEEEeCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPS-----AYYLLTG-GYDNKLVLTDLQG  121 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~-~~d~~i~~~~~~~  121 (125)
                      +.+..|.+|.++|++++|.-+     |.++.++ ..+.-+.+|-++.
T Consensus       175 evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  175 EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999999999999999999876     6666654 4577788886654

>KOG4227|consensus

Probab=98.93  E-value=2.9e-08  Score=63.95  Aligned_cols=107  Identities=14%  Similarity=0.206  Sum_probs=84.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      +.+|.++++|...|+.+.+.+.++....                  ....|..+..+|..+.+++.+.++.|.+||.+..
T Consensus       120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~------------------~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~  181 (609)
T KOG4227|consen  120 LYSGERWGTVIKHDIETKQSIYVANENN------------------NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR  181 (609)
T ss_pred             EecCCCcceeEeeecccceeeeeecccC------------------cccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence            4689999999999999988888876432                  1157889999999999999999999999999876


Q ss_pred             c-eeEEe--CCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCCCCC
Q psy14458         81 R-PLQTF--KPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        81 ~-~~~~~--~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      + ....+  -........+.|+| ...+|++.+..+-+-+||.+....|
T Consensus       182 ~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~  230 (609)
T KOG4227|consen  182 QNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP  230 (609)
T ss_pred             CCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch
Confidence            5 22222  23445677899999 6688899999999999998865543

>KOG2139|consensus

Probab=98.90  E-value=6e-08  Score=61.76  Aligned_cols=86  Identities=17%  Similarity=0.228  Sum_probs=63.5

Q ss_pred             cCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeE
Q psy14458          5 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQ   84 (125)
Q Consensus         5 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~   84 (125)
                      -.|..|+|||..++..+....-..                    ..++-+.|||++.+++.+.-|+..++|+.....-..
T Consensus       215 ~gsssi~iWdpdtg~~~pL~~~gl--------------------gg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~e  274 (445)
T KOG2139|consen  215 FGSSSIMIWDPDTGQKIPLIPKGL--------------------GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKE  274 (445)
T ss_pred             cCcceEEEEcCCCCCcccccccCC--------------------CceeeEEEcCCCCEEEEecccceeeeehhcccceec
Confidence            346789999999887655442222                    567889999999999999999999999655433222


Q ss_pred             EeCCCCCceeEEEEccCCCeEEEeec
Q psy14458         85 TFKPHTADVRSIRFSPSAYYLLTGGY  110 (125)
Q Consensus        85 ~~~~~~~~v~~~~~~~~~~~~~~~~~  110 (125)
                      ......+.|...+|+|+|++|+-.+.
T Consensus       275 rw~lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  275 RWILGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             ceeccCCceeeeeecCCCCEEEEEEc
Confidence            33334558999999999987765544

>KOG2321|consensus

Probab=98.89  E-value=2.1e-08  Score=67.00  Aligned_cols=114  Identities=20%  Similarity=0.281  Sum_probs=79.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |+.|+.||.|..||.+....+..+..... |.+.   +     .......|+++.|+.+|-.++.|+.+|.+.+||++..
T Consensus       190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~s~---p-----g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~  260 (703)
T KOG2321|consen  190 LACGTEDGVVEFWDPRDKSRVGTLDAASS-VNSH---P-----GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS  260 (703)
T ss_pred             EEecccCceEEEecchhhhhheeeecccc-cCCC---c-----cccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence            46788899999999998766555542211 1000   0     0011256999999999999999999999999999999


Q ss_pred             ceeEEeC-CCCCceeEEEEccC-CCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 RPLQTFK-PHTADVRSIRFSPS-AYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~~~~~-~~~~~v~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +++..-. ...-++..+.|.+. +.--+.......+++||-.++.
T Consensus       261 ~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk  305 (703)
T KOG2321|consen  261 KPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK  305 (703)
T ss_pred             CceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCC
Confidence            8877554 23346788999874 2333333455779999977653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=7.1e-08  Score=64.16  Aligned_cols=71  Identities=21%  Similarity=0.286  Sum_probs=50.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCce--eEEeCCCCCceeEEEEccCCCeEEEee-cCCeEEEE--eCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHED---SSCVLYDIRGSRP--LQTFKPHTADVRSIRFSPSAYYLLTGG-YDNKLVLT--DLQ  120 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~i~~~--~~~  120 (125)
                      ..+...+|+|+++.++..+.+   ..|++||+.+++.  +..+..   .....+|+|||+.|+.++ .++.+.+|  |+.
T Consensus       204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~  280 (429)
T PRK01742        204 QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN  280 (429)
T ss_pred             CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEEEEEEECC
Confidence            578899999999988877543   4699999988753  333333   334689999999887764 57765554  654


Q ss_pred             CC
Q psy14458        121 GT  122 (125)
Q Consensus       121 ~~  122 (125)
                      ++
T Consensus       281 ~~  282 (429)
T PRK01742        281 GG  282 (429)
T ss_pred             CC
Confidence            43

>KOG0644|consensus

Probab=98.85  E-value=1.5e-09  Score=75.12  Aligned_cols=79  Identities=16%  Similarity=0.321  Sum_probs=73.7

Q ss_pred             cCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         45 TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        45 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..|-..|.|+.|...|.++++|++|..++||...+..++...++|.+.++.++.+.+..++++++.|..|++|-++.+.
T Consensus       187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~  265 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA  265 (1113)
T ss_pred             HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence            3566789999999999999999999999999999999999999999999999999999999999999999999998764

>KOG0280|consensus

Probab=98.83  E-value=1.7e-08  Score=62.53  Aligned_cols=99  Identities=24%  Similarity=0.301  Sum_probs=68.8

Q ss_pred             CeeecCCCeEEEEECCCCc-ceee-ecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEc
Q psy14458          1 MVSGHEDSSCVLYDIRGSR-PLQT-FKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS-GRLMVSGHEDSSCVLYDI   77 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~-~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~d~   77 (125)
                      +.+|+.|+.+..||++..+ .+.. .+.|.                    ..|.+|.-+|. ..++++|+-|..|++||.
T Consensus       181 vytGgDD~~l~~~D~R~p~~~i~~n~kvH~--------------------~GV~SI~ss~~~~~~I~TGsYDe~i~~~Dt  240 (339)
T KOG0280|consen  181 VYTGGDDGSLSCWDIRIPKTFIWHNSKVHT--------------------SGVVSIYSSPPKPTYIATGSYDECIRVLDT  240 (339)
T ss_pred             EEecCCCceEEEEEecCCcceeeecceeee--------------------cceEEEecCCCCCceEEEeccccceeeeeh
Confidence            4789999999999999433 3322 33344                    78888888775 578999999999999999


Q ss_pred             CC-CceeEEeCCCCCceeEEEEccCC--CeEEEeecCCeEEEEeCCC
Q psy14458         78 RG-SRPLQTFKPHTADVRSIRFSPSA--YYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        78 ~~-~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~d~~i~~~~~~~  121 (125)
                      ++ ++++..-. -.+.|+.+.++|.-  ..++++=+.| .++.+++.
T Consensus       241 Rnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~  285 (339)
T KOG0280|consen  241 RNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD  285 (339)
T ss_pred             hcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence            96 56665444 45889999999943  3333332333 44555443

>KOG1064|consensus

Probab=98.83  E-value=2.4e-08  Score=74.14  Aligned_cols=118  Identities=15%  Similarity=0.315  Sum_probs=77.3

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCC-CCCeEEEEecCc---------------------ccccccCCCCCeEEEEECCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPH-TADVRSIHLDHY---------------------TTEAGTRQGSPVSALCVDPS   59 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~---------------------~~~~~~~~~~~i~~~~~~~~   59 (125)
                      +||+.||.|++|.-..++.+..++.- ...++.+.|+..                     .....+-|......+.|-. 
T Consensus      2224 ltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~- 2302 (2439)
T KOG1064|consen 2224 LTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG- 2302 (2439)
T ss_pred             EecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeee-
Confidence            79999999999998877776665421 133333333211                     1111123344445555443 


Q ss_pred             CCEEEEE---eCCCcEEEEEcCCC--ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         60 GRLMVSG---HEDSSCVLYDIRGS--RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        60 ~~~~~~~---~~~~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                       ..++++   +.++.+.+||....  ..+. ...|.+.++++++.|..+.+++|+.+|.+++||++.+
T Consensus      2303 -s~~~tag~s~d~~n~~lwDtl~~~~~s~v-~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2303 -SLLATAGRSSDNRNVCLWDTLLPPMNSLV-HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred             -hhhhccccCCCCCcccchhcccCccccee-eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence             333333   35677888886442  2222 2679999999999999999999999999999999764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.80  E-value=5.3e-07  Score=57.97  Aligned_cols=98  Identities=14%  Similarity=0.246  Sum_probs=67.7

Q ss_pred             eeecCCCeEEEEECCCC-c--ceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEc
Q psy14458          2 VSGHEDSSCVLYDIRGS-R--PLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH-EDSSCVLYDI   77 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~-~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~d~   77 (125)
                      ++...|+.|++|++.+. +  .+..+.. .                    .....++++|++++++.++ .++.|.+|++
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~--------------------~~~~~l~~spd~~~lyv~~~~~~~i~~~~~   64 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDV-P--------------------GQVQPMVISPDKRHLYVGVRPEFRVLSYRI   64 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEec-C--------------------CCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence            45577899999999643 2  2333321 1                    3456789999999886654 5788999998


Q ss_pred             CC-Cce--eEEeCCCCCceeEEEEccCCCeEEEeec-CCeEEEEeCCC
Q psy14458         78 RG-SRP--LQTFKPHTADVRSIRFSPSAYYLLTGGY-DNKLVLTDLQG  121 (125)
Q Consensus        78 ~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~i~~~~~~~  121 (125)
                      .. ++.  ..... .......+.++|+++++++++. ++.+.+|++..
T Consensus        65 ~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         65 ADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             CCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence            63 332  22222 3334678999999998888774 88999999863

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.79  E-value=5.1e-07  Score=58.05  Aligned_cols=73  Identities=14%  Similarity=0.181  Sum_probs=52.9

Q ss_pred             CCeEEEEECCCCCEEEEEeC-CCcEEEEEcCC--Cc--eeEEeCCC------CCceeEEEEccCCCeEEEee-cCCeEEE
Q psy14458         49 SPVSALCVDPSGRLMVSGHE-DSSCVLYDIRG--SR--PLQTFKPH------TADVRSIRFSPSAYYLLTGG-YDNKLVL  116 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~-~~~i~~~d~~~--~~--~~~~~~~~------~~~v~~~~~~~~~~~~~~~~-~d~~i~~  116 (125)
                      .....++|+|++++++.++. ++.|.+|++..  ++  .+..+...      ......+.++|++++++++. .++.|.+
T Consensus       175 ~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v  254 (330)
T PRK11028        175 AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISV  254 (330)
T ss_pred             CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEE
Confidence            44668899999999988876 89999999973  22  23333211      12334688999999888875 4789999


Q ss_pred             EeCCC
Q psy14458        117 TDLQG  121 (125)
Q Consensus       117 ~~~~~  121 (125)
                      |++..
T Consensus       255 ~~i~~  259 (330)
T PRK11028        255 FSVSE  259 (330)
T ss_pred             EEEeC
Confidence            99854

>KOG0974|consensus

Probab=98.77  E-value=2.2e-07  Score=65.58  Aligned_cols=107  Identities=13%  Similarity=0.083  Sum_probs=79.0

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      +.+..++.+.+||...+.....+........                ....-+-.+++.-++++|+.-+.|.+|......
T Consensus       103 ~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l----------------~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen  103 ALVTSRNSLLIRDSKNSSVLSKIQSDERCTL----------------YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN  166 (967)
T ss_pred             EEEEcCceEEEEecccCceehhcCCCceEEE----------------EeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence            4566677888888776666555553332111                122233455566788999999999999987433


Q ss_pred             eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCC
Q psy14458         82 PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMR  124 (125)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  124 (125)
                      ....+.+|++.+.++.++-||.++++.|.|+++++|++.+...
T Consensus       167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~  209 (967)
T KOG0974|consen  167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV  209 (967)
T ss_pred             CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc
Confidence            3335778999999999999999999999999999999988754

>KOG2111|consensus

Probab=98.75  E-value=9e-07  Score=55.55  Aligned_cols=61  Identities=8%  Similarity=0.299  Sum_probs=51.3

Q ss_pred             CeeecCCCe-EEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSS-CVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~-i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      +||++..|+ |||||..+++.++.++.-..                  ...|.||+|||+..+++.+++.|+++++.++.
T Consensus       196 vATaStkGTLIRIFdt~~g~~l~E~RRG~d------------------~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  196 VATASTKGTLIRIFDTEDGTLLQELRRGVD------------------RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEeccCcEEEEEEEcCCCcEeeeeecCCc------------------hheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            477888776 67999999999998874221                  16799999999999999999999999999875

>KOG1240|consensus

Probab=98.75  E-value=1.2e-07  Score=68.33  Aligned_cols=80  Identities=19%  Similarity=0.296  Sum_probs=62.5

Q ss_pred             ccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCC-------ceeEEeCCCCCceeEEEEccCCCeEEEeecCCe
Q psy14458         42 EAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRGS-------RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNK  113 (125)
Q Consensus        42 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~  113 (125)
                      .....|...+..++.++.. .++++|+.||+|++|+++.-       +...++..-...+.++...+.+..++.++.||.
T Consensus      1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred             ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence            3334556777888888765 99999999999999999752       122333334677889999999999999999999


Q ss_pred             EEEEeCCC
Q psy14458        114 LVLTDLQG  121 (125)
Q Consensus       114 i~~~~~~~  121 (125)
                      |.+.++.-
T Consensus      1122 v~~~~id~ 1129 (1431)
T KOG1240|consen 1122 VRVLRIDH 1129 (1431)
T ss_pred             EEEEEccc
Confidence            99998764

>KOG4640|consensus

Probab=98.73  E-value=1.8e-07  Score=63.18  Aligned_cols=74  Identities=18%  Similarity=0.216  Sum_probs=66.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCcee-EEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVR-SIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..+..+.|+|...++|.+..+|.+-+..+. .+.+.++..+...+. +++|.|||++++.|-.||+|++.|..++.
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            678899999999999999999999999877 778888886776676 99999999999999999999999998774

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.71  E-value=6.6e-07  Score=59.63  Aligned_cols=68  Identities=13%  Similarity=0.221  Sum_probs=48.4

Q ss_pred             EEEEECCCCCEEEEEe-CCCcEEE--EEcCCCceeEEeCCCCCceeEEEEccCCCeEEEee-cCCeEEEEeCC
Q psy14458         52 SALCVDPSGRLMVSGH-EDSSCVL--YDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGG-YDNKLVLTDLQ  120 (125)
Q Consensus        52 ~~~~~~~~~~~~~~~~-~~~~i~~--~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~i~~~~~~  120 (125)
                      ...+|+|+++.++.+. .+|...+  ||+.+++. ..+..+...+....|+|||+.|+..+ .++...+|++.
T Consensus       251 ~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~  322 (429)
T PRK01742        251 GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS  322 (429)
T ss_pred             CceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence            3679999999887754 6776555  46655543 34555666778899999999777655 56778888764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.71  E-value=1.7e-06  Score=57.24  Aligned_cols=100  Identities=18%  Similarity=0.278  Sum_probs=78.6

Q ss_pred             eeecCCC-eEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          2 VSGHEDS-SCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         2 ~t~~~d~-~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      +.|.+|| .+-|||.++++... +...-                    ..|.++..+|+|++++.+.....+.+.|+.++
T Consensus       375 vigt~dgD~l~iyd~~~~e~kr-~e~~l--------------------g~I~av~vs~dGK~~vvaNdr~el~vididng  433 (668)
T COG4946         375 VIGTNDGDKLGIYDKDGGEVKR-IEKDL--------------------GNIEAVKVSPDGKKVVVANDRFELWVIDIDNG  433 (668)
T ss_pred             EEeccCCceEEEEecCCceEEE-eeCCc--------------------cceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence            5677777 78888887665432 23233                    67899999999999999999999999999998


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecC----CeEEEEeCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYD----NKLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d----~~i~~~~~~~~  122 (125)
                      .....=+...+-+..+.|+|++++++-+--+    ..|+++|+.++
T Consensus       434 nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         434 NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence            7655444556779999999999999987554    45899998774

>KOG1645|consensus

Probab=98.69  E-value=1.7e-07  Score=60.37  Aligned_cols=81  Identities=12%  Similarity=0.154  Sum_probs=68.6

Q ss_pred             cccCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCC
Q psy14458         43 AGTRQGSPVSALCVDPSGR-LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        43 ~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~  120 (125)
                      ....++..|..++|+|..+ ++..++.++.|++.|+++...+..+..+ +.+++.+|.-|. .+|.+|-..|.|.++|++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            3445668899999999887 7899999999999999999988888877 789999998865 566777789999999999


Q ss_pred             CCCC
Q psy14458        121 GTMR  124 (125)
Q Consensus       121 ~~~~  124 (125)
                      ....
T Consensus       267 ~~~~  270 (463)
T KOG1645|consen  267 QPEG  270 (463)
T ss_pred             CCCc
Confidence            7654

>KOG4190|consensus

Probab=98.69  E-value=2.4e-07  Score=62.39  Aligned_cols=123  Identities=15%  Similarity=0.243  Sum_probs=86.3

Q ss_pred             CeeecCCCeEEEEECCCC-------cceeeecCCCCCeEEEEecCcccc-----------------------cccCCCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGS-------RPLQTFKPHTADVRSIHLDHYTTE-----------------------AGTRQGSP   50 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~-----------------------~~~~~~~~   50 (125)
                      |++++.|++|++|.++..       .+..+++.|..+|..+.|-.....                       ....++..
T Consensus       750 FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~  829 (1034)
T KOG4190|consen  750 FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAG  829 (1034)
T ss_pred             eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeecccccchhHhhhcCcccCCC
Confidence            578999999999999752       356677889999988876332211                       11122222


Q ss_pred             eEEEEECC-CCCEEEE-EeCCCcEEEEEcCCCceeEEeC-----CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         51 VSALCVDP-SGRLMVS-GHEDSSCVLYDIRGSRPLQTFK-----PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        51 i~~~~~~~-~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      -...++-. +...+.. ++.+.+|+++|.+..+....++     +-+..+++++..|.|+.++.+-..|+|.+.|.++++
T Consensus       830 ~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  830 GNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             ceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence            22222222 3444444 4788999999999877655554     234568899999999999999999999999999886

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.67  E-value=1.8e-06  Score=57.68  Aligned_cols=74  Identities=15%  Similarity=0.112  Sum_probs=54.7

Q ss_pred             CCCeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEE-EeecCCe--EEEEeCCC
Q psy14458         48 GSPVSALCVDPSGRLMVSGHE---DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLL-TGGYDNK--LVLTDLQG  121 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~d~~--i~~~~~~~  121 (125)
                      ...+....|+|+++.++..+.   +..|++||+.+++... +..+.+.+....|+|||+.++ +.+.++.  |+++|+.+
T Consensus       201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~  279 (435)
T PRK05137        201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS  279 (435)
T ss_pred             CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence            367889999999998877653   4679999998876533 344556677899999998775 4455554  77778876


Q ss_pred             C
Q psy14458        122 T  122 (125)
Q Consensus       122 ~  122 (125)
                      +
T Consensus       280 ~  280 (435)
T PRK05137        280 G  280 (435)
T ss_pred             C
Confidence            5

>KOG2695|consensus

Probab=98.65  E-value=2.7e-07  Score=58.58  Aligned_cols=100  Identities=17%  Similarity=0.219  Sum_probs=71.9

Q ss_pred             eeecCCCeEEEEECCCC-----cceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECC-CCCEEEEEeCCCcEEEE
Q psy14458          2 VSGHEDSSCVLYDIRGS-----RPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP-SGRLMVSGHEDSSCVLY   75 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~   75 (125)
                      ..|+..|.|...|++..     .+...+. |.                    +.|+++..-. ++.+++..+.+|.|++|
T Consensus       268 ~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~--------------------Ssvtslq~Lq~s~q~LmaS~M~gkikLy  326 (425)
T KOG2695|consen  268 FNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HD--------------------SSVTSLQILQFSQQKLMASDMTGKIKLY  326 (425)
T ss_pred             EecccCCcEEEEEeeecccCCCcceEEEE-cC--------------------cchhhhhhhccccceEeeccCcCceeEe
Confidence            45777888888888754     1222222 23                    6778777666 67889999999999999


Q ss_pred             EcCCCce---eEEeCCCCCceeE--EEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         76 DIRGSRP---LQTFKPHTADVRS--IRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        76 d~~~~~~---~~~~~~~~~~v~~--~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      |.+--++   +..+++|-+.-.-  +..++....+++++.|-..++|.++.+
T Consensus       327 D~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g  378 (425)
T KOG2695|consen  327 DLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG  378 (425)
T ss_pred             eehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence            9987665   7777777553322  234556678888999999999999865

>KOG4497|consensus

Probab=98.62  E-value=1.2e-06  Score=55.60  Aligned_cols=88  Identities=10%  Similarity=0.223  Sum_probs=66.6

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGR-LMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~   80 (125)
                      .....|+.|.+|++....--..++...                    ..+..++|||+|+ .+.+..-+-.|.+|.+.+.
T Consensus        65 C~~yk~~~vqvwsl~Qpew~ckIdeg~--------------------agls~~~WSPdgrhiL~tseF~lriTVWSL~t~  124 (447)
T KOG4497|consen   65 CVAYKDPKVQVWSLVQPEWYCKIDEGQ--------------------AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ  124 (447)
T ss_pred             eeeeccceEEEEEeecceeEEEeccCC--------------------CcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence            345678899999988776666676555                    7889999999995 5566667888999999887


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeec
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGY  110 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  110 (125)
                      +... +..-+..+..++|+|||++.+.++.
T Consensus       125 ~~~~-~~~pK~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen  125 KGYL-LPHPKTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             eeEE-ecccccCceeEEECCCCceeeeeec
Confidence            6554 3323444678999999999988765

>KOG1064|consensus

Probab=98.61  E-value=1.7e-07  Score=69.92  Aligned_cols=109  Identities=18%  Similarity=0.337  Sum_probs=81.0

Q ss_pred             eecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCc------------------------ccccccCCCCCeEEEEECC
Q psy14458          3 SGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHY------------------------TTEAGTRQGSPVSALCVDP   58 (125)
Q Consensus         3 t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~------------------------~~~~~~~~~~~i~~~~~~~   58 (125)
                      .+..||.+.+|.+. .++....+.|........|-+.                        .......|....+++++-|
T Consensus      2268 i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP 2346 (2439)
T ss_pred             eeccCCceeecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC
Confidence            45678889999876 4444444555555555554321                        1111146778999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ...++++|+.+|.|++||++..+..+.+..         ++ ...++++|+..|.++||++...
T Consensus      2347 ~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence            999999999999999999998887776664         33 5678999999999999998754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.58  E-value=4.6e-06  Score=55.75  Aligned_cols=73  Identities=19%  Similarity=0.218  Sum_probs=51.4

Q ss_pred             CCeEEEEECCCCCEEE-EEeCCCc--EEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec-C--CeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMV-SGHEDSS--CVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY-D--NKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~-~~~~~~~--i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d--~~i~~~~~~~~  122 (125)
                      ..+...+|+|+++.++ +.+.++.  |++||+.+++.. .+..+........|+|||+.++..+. +  ..|+++|+.++
T Consensus       246 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        246 GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence            4556789999998764 5555555  777888776543 34445556677899999998877663 3  36888887654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.57  E-value=6.5e-06  Score=55.00  Aligned_cols=73  Identities=10%  Similarity=0.040  Sum_probs=49.0

Q ss_pred             CeEEEEECCCCCEEEEEeC-CCc--EEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCC---eEEEEeCCCCC
Q psy14458         50 PVSALCVDPSGRLMVSGHE-DSS--CVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN---KLVLTDLQGTM  123 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~-~~~--i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~---~i~~~~~~~~~  123 (125)
                      .....+|+|+++.++..+. +|.  |+++++.+++... +..+........|+|||+.++..+.++   .|.+||+.++.
T Consensus       293 ~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~  371 (433)
T PRK04922        293 IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS  371 (433)
T ss_pred             CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence            4456799999998876653 444  6777776655322 222333455789999999988765432   59999987653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.56  E-value=2.4e-06  Score=57.07  Aligned_cols=74  Identities=18%  Similarity=0.194  Sum_probs=53.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEE-EeecCC--eEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHED---SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLL-TGGYDN--KLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~d~--~i~~~~~~~~  122 (125)
                      ..+...+|+|+++.++..+.+   ..|++||+.+++... +....+...+..|+|||+.++ +.+.++  .|++||+.++
T Consensus       204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g  282 (433)
T PRK04922        204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR  282 (433)
T ss_pred             CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC
Confidence            567889999999988877633   459999998776533 223344455789999998775 445554  5999998765


Q ss_pred             C
Q psy14458        123 M  123 (125)
Q Consensus       123 ~  123 (125)
                      .
T Consensus       283 ~  283 (433)
T PRK04922        283 Q  283 (433)
T ss_pred             C
Confidence            3

>KOG2066|consensus

Probab=98.54  E-value=1.8e-06  Score=59.96  Aligned_cols=98  Identities=14%  Similarity=0.238  Sum_probs=68.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC-----CCEEEEEeCCCcEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS-----GRLMVSGHEDSSCVLY   75 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~i~~~   75 (125)
                      ++||+.||+|.|-.+.+.+...++.- .                    .++.+++++|+     ...+++|+..| +.++
T Consensus        86 ~asCS~DGkv~I~sl~~~~~~~~~df-~--------------------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~  143 (846)
T KOG2066|consen   86 VASCSDDGKVVIGSLFTDDEITQYDF-K--------------------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLS  143 (846)
T ss_pred             EEEecCCCcEEEeeccCCccceeEec-C--------------------CcceeEEeccchhhhhhhheeecCcce-EEEe
Confidence            46777777777777666555444331 2                    57788888887     36789999888 6666


Q ss_pred             EcCC--CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         76 DIRG--SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        76 d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .-+.  .+.-......+++|.++.|  .|.+|+.++.+| +++||..++.
T Consensus       144 er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~  190 (846)
T KOG2066|consen  144 ERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQ  190 (846)
T ss_pred             hhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccc
Confidence            5332  1222235556789999999  788999998888 8999987654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.54  E-value=4e-06  Score=55.95  Aligned_cols=71  Identities=13%  Similarity=0.125  Sum_probs=50.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEE-EeecCCeEEEEeC
Q psy14458         48 GSPVSALCVDPSGRLMVSGHED---SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLL-TGGYDNKLVLTDL  119 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~d~~i~~~~~  119 (125)
                      ...+...+|+|+++.++..+.+   ..|++||+.+++... +....+.+....|+|||+.++ +.+.++...+|.+
T Consensus       195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            3678889999999988776533   359999998876543 332344566899999998776 4567777555543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.54  E-value=8.7e-06  Score=54.38  Aligned_cols=73  Identities=11%  Similarity=0.131  Sum_probs=49.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCC-Cc--EEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecC---CeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHED-SS--CVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD---NKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~-~~--i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d---~~i~~~~~~~~  122 (125)
                      ..+....|+|+++.++..+.. +.  |+++|+.+++.. .+...........|+|||+.++..+.+   ..|.+||+.++
T Consensus       287 ~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g  365 (429)
T PRK03629        287 SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  365 (429)
T ss_pred             CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            456788999999988766654 44  555566655432 233233445678999999988776543   35888998765

>smart00320 WD40 WD40 repeats

Probab=98.54  E-value=5.1e-07  Score=38.60  Aligned_cols=38  Identities=39%  Similarity=0.556  Sum_probs=32.8

Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      +....+..|...|.++.|+|++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34555667888999999999989999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1409|consensus

Probab=98.53  E-value=3.5e-07  Score=58.01  Aligned_cols=39  Identities=15%  Similarity=0.247  Sum_probs=30.4

Q ss_pred             eEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         83 LQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        83 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      +..+..-...|.++.+..+-..+++++.|+.|++||++.
T Consensus       357 LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  357 LAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             cccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            333333334688898888888999999999999999975

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.53  E-value=7.8e-06  Score=54.61  Aligned_cols=72  Identities=11%  Similarity=0.154  Sum_probs=49.4

Q ss_pred             CeEEEEECCCCCEEEEE-eCCC--cEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecC-C--eEEEEeCCCC
Q psy14458         50 PVSALCVDPSGRLMVSG-HEDS--SCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD-N--KLVLTDLQGT  122 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~-~~~~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~--~i~~~~~~~~  122 (125)
                      ......|+|+++.++.. +.+|  .|++||+.+++... +..+...+....|+|||+.|+..+.+ +  .|..+|+.++
T Consensus       244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g  321 (429)
T PRK03629        244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG  321 (429)
T ss_pred             CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC
Confidence            34467999999887754 4444  48899998776544 33344567789999999988777653 3  4555566543

>KOG1334|consensus

Probab=98.51  E-value=3.3e-07  Score=60.39  Aligned_cols=74  Identities=15%  Similarity=0.230  Sum_probs=63.5

Q ss_pred             CCeEEEE-ECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALC-VDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~-~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ..|-++- |-|..+++++|+.-|.|.+|+-.+++.+..+++...-|+|+.-+|---.|++++-|.-|+||...+.
T Consensus       394 ~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  394 RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             cccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            3455554 4477899999999999999999999999888888889999999998899999999999999987543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.50  E-value=1.3e-05  Score=52.63  Aligned_cols=100  Identities=16%  Similarity=0.275  Sum_probs=69.7

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH-EDSSCVLYDIRGS   80 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~   80 (125)
                      ++.+.|+.|.++|+.+++.+..++..                     ....+++++++|++++.++ ..+.+.++|..+.
T Consensus        52 yv~~rdg~vsviD~~~~~~v~~i~~G---------------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl  110 (369)
T PF02239_consen   52 YVANRDGTVSVIDLATGKVVATIKVG---------------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL  110 (369)
T ss_dssp             EEEETTSEEEEEETTSSSEEEEEE-S---------------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT-
T ss_pred             EEEcCCCeEEEEECCcccEEEEEecC---------------------CCcceEEEcCCCCEEEEEecCCCceeEeccccc
Confidence            45577999999999999988887643                     4567899999999988776 6789999999999


Q ss_pred             ceeEEeCCC-------CCceeEEEEccCCC-eEEEeecCCeEEEEeCCCC
Q psy14458         81 RPLQTFKPH-------TADVRSIRFSPSAY-YLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~~~~~-------~~~v~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~  122 (125)
                      +.+..+...       ...+..+..+|... ++++.-..+.|.+.|....
T Consensus       111 e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen  111 EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             -EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred             cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence            988877632       24567787788766 5555555688888886654

...

>KOG1409|consensus

Probab=98.50  E-value=1.8e-06  Score=54.94  Aligned_cols=96  Identities=22%  Similarity=0.420  Sum_probs=76.9

Q ss_pred             CCCCeEEEEecCc---ccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc-eeEEeCCCCCceeEEEEccCC
Q psy14458         27 HTADVRSIHLDHY---TTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR-PLQTFKPHTADVRSIRFSPSA  102 (125)
Q Consensus        27 ~~~~i~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~  102 (125)
                      |.++|..+.+...   .+.....+...+.+++|.|....+++|..|..+-+||+-..+ ....+.+|.+.|..+++.+.-
T Consensus       173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t  252 (404)
T KOG1409|consen  173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT  252 (404)
T ss_pred             cccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh
Confidence            5666666665432   233344667899999999999999999999999999987643 344566799999999998888


Q ss_pred             CeEEEeecCCeEEEEeCCCC
Q psy14458        103 YYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus       103 ~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +.+++++.||.|.+||+...
T Consensus       253 ~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  253 RQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             eeeeeccCCCeEEEEeccce
Confidence            89999999999999999754

>KOG4532|consensus

Probab=98.46  E-value=1.5e-05  Score=49.43  Aligned_cols=74  Identities=12%  Similarity=0.097  Sum_probs=57.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-ceeEE-eC-CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         50 PVSALCVDPSGRLMVSGHEDSSCVLYDIRGS-RPLQT-FK-PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~-~~-~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ....++++++++++++.+....|-.|.+... +.+.. .. .....-.+..|+.+...++++..||++.+||+|...
T Consensus       160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence            4789999999999999999999999988653 32222 11 223334578899999999999999999999998654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.39  E-value=2.4e-05  Score=51.90  Aligned_cols=73  Identities=16%  Similarity=0.221  Sum_probs=52.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEE-eecCC--eEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHED---SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLT-GGYDN--KLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~--~i~~~~~~~~  122 (125)
                      ..+...+|+|++++++....+   ..|++||+.+++... +..+...+.+..|+||++.|+. .+.++  .|++||+.++
T Consensus       190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~  268 (417)
T TIGR02800       190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK  268 (417)
T ss_pred             CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC
Confidence            567788899999988876643   469999998875443 2234555667899999987654 44443  5888888765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.38  E-value=2.8e-05  Score=51.90  Aligned_cols=74  Identities=15%  Similarity=0.157  Sum_probs=52.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEE-eecCC--eEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHED---SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLT-GGYDN--KLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~--~i~~~~~~~~  122 (125)
                      ..+....|+|+++.++..+.+   ..|++||+.+++... +....+.+....|+|||+.++. .+.++  .|+++|+.++
T Consensus       199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~  277 (430)
T PRK00178        199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR  277 (430)
T ss_pred             CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            677888999999988765533   358999998876433 3323444557899999987764 44444  5888898765


Q ss_pred             C
Q psy14458        123 M  123 (125)
Q Consensus       123 ~  123 (125)
                      .
T Consensus       278 ~  278 (430)
T PRK00178        278 Q  278 (430)
T ss_pred             C
Confidence            3

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.37  E-value=4.2e-05  Score=49.76  Aligned_cols=94  Identities=14%  Similarity=0.114  Sum_probs=69.4

Q ss_pred             CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeC----------CCcEEEEEc
Q psy14458          8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHE----------DSSCVLYDI   77 (125)
Q Consensus         8 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~~i~~~d~   77 (125)
                      ++|.+.|..+++.+..+..-.                     .-..+ ++|+++.++.+..          +..|.+||.
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~---------------------~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~   84 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGF---------------------LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDP   84 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccC---------------------CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence            678888888777776665322                     22234 8999988777655          788999999


Q ss_pred             CCCceeEEeCCC-------CCceeEEEEccCCCeEEEee-c-CCeEEEEeCCCCC
Q psy14458         78 RGSRPLQTFKPH-------TADVRSIRFSPSAYYLLTGG-Y-DNKLVLTDLQGTM  123 (125)
Q Consensus        78 ~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~-~-d~~i~~~~~~~~~  123 (125)
                      .+.+.+..+..-       ......+.++|||++++... . +..+.+.|+.++.
T Consensus        85 ~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k  139 (352)
T TIGR02658        85 QTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA  139 (352)
T ss_pred             ccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc
Confidence            999988877631       11234689999999888766 3 7889999998764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.36  E-value=2.9e-05  Score=51.88  Aligned_cols=73  Identities=19%  Similarity=0.180  Sum_probs=47.0

Q ss_pred             CCeEEEEECCCCCEEEEEeC-CCcEEEEEc--CCCceeEEeCCCCCceeEEEEccCCCeEEEeecCC---eEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHE-DSSCVLYDI--RGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN---KLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~-~~~i~~~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~---~i~~~~~~~~  122 (125)
                      .......|+|+++.++..+. ++...+|..  .+++... +...........|+|||++++..+.++   .|.+||+.++
T Consensus       284 ~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        284 GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence            34566789999988776554 455555554  4443222 221223344678999999998776544   6999998765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.34  E-value=5.3e-05  Score=50.27  Aligned_cols=72  Identities=14%  Similarity=0.168  Sum_probs=51.3

Q ss_pred             CeEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCC---eEEEEeCCCC
Q psy14458         50 PVSALCVDPSGRLMVSGHE-DS--SCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN---KLVLTDLQGT  122 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~-~~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~---~i~~~~~~~~  122 (125)
                      ......|+|+++.++..+. .+  .|+++|+.+++.. .+..+...+....|+|++++++..+.++   .|.++|+.++
T Consensus       279 ~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       279 IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence            3446689999988776554 33  5788887766533 3333455667889999999998888765   7888888764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.34  E-value=4.8e-05  Score=56.07  Aligned_cols=73  Identities=8%  Similarity=0.079  Sum_probs=57.6

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC-------------CCCCceeEEEEccCCCeEEEeecCCeEEEE
Q psy14458         51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK-------------PHTADVRSIRFSPSAYYLLTGGYDNKLVLT  117 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~  117 (125)
                      ...+++++++..+++-..++.|++||..++.......             +.-.....++++++|+++++-+.++.|++|
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence            4588999999988888899999999988765432221             112346789999999999999999999999


Q ss_pred             eCCCCC
Q psy14458        118 DLQGTM  123 (125)
Q Consensus       118 ~~~~~~  123 (125)
                      |++++.
T Consensus       886 d~~~~~  891 (1057)
T PLN02919        886 DLNKGE  891 (1057)
T ss_pred             ECCCCc
Confidence            998753

>KOG4714|consensus

Probab=98.27  E-value=7.8e-06  Score=50.39  Aligned_cols=98  Identities=20%  Similarity=0.296  Sum_probs=65.7

Q ss_pred             CeeecCCCeEEEEECCCCcc-eeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRP-LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS-GRLMVSGHEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~d~~   78 (125)
                      ++.|+.||.+.+||.+.... ...++.|.                    ..+.-+.|+|. +..|+++++||.+..||..
T Consensus       195 v~cgt~dg~~~l~d~rn~~~p~S~l~ahk--------------------~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  195 VCCGTDDGIVGLWDARNVAMPVSLLKAHK--------------------AEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             EEEecCCCeEEEEEcccccchHHHHHHhh--------------------hhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            36789999999999988743 33455666                    67788888885 5789999999999999987


Q ss_pred             CCc-----------------eeEE---eCC-CCCceeEE-EEccCCCeEEEeecCCeEEEEe
Q psy14458         79 GSR-----------------PLQT---FKP-HTADVRSI-RFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        79 ~~~-----------------~~~~---~~~-~~~~v~~~-~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      +.-                 ++..   +.. ....+.++ .|.-.|..+++|+.-+.|++.+
T Consensus       255 ~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  255 TTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             CceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence            311                 1111   000 11112222 2333678899999888888874

>KOG0309|consensus

Probab=98.27  E-value=2.1e-06  Score=59.58  Aligned_cols=103  Identities=17%  Similarity=0.298  Sum_probs=77.2

Q ss_pred             CeeecCCCeEEEEECCCCc-ceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSR-PLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      +++++-|..+..||+++.. ++..+....                    ...+-++|+-....+...+..+.|++||.+.
T Consensus       130 latcsvdt~vh~wd~rSp~~p~ys~~~w~--------------------s~asqVkwnyk~p~vlasshg~~i~vwd~r~  189 (1081)
T KOG0309|consen  130 LATCSVDTYVHAWDMRSPHRPFYSTSSWR--------------------SAASQVKWNYKDPNVLASSHGNDIFVWDLRK  189 (1081)
T ss_pred             eeeccccccceeeeccCCCcceeeeeccc--------------------ccCceeeecccCcchhhhccCCceEEEeccC
Confidence            5788888889999987653 445544444                    4556677776655555566777899999987


Q ss_pred             C-ceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCCC
Q psy14458         80 S-RPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        80 ~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      + .++..+++|-..|+.+.|+. ....+.+++.|+++++||.....
T Consensus       190 gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  190 GSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             CCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence            5 57778888888899998876 44577888999999999987543

>KOG2695|consensus

Probab=98.23  E-value=2.6e-06  Score=54.29  Aligned_cols=73  Identities=27%  Similarity=0.323  Sum_probs=59.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-----ceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS-----RPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +.|-++.|...+++++.|+.+|.|...|++.+     .+...+- |...|+++..-. +++.+.+.+.+|+|++||+|.-
T Consensus       253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~  331 (425)
T KOG2695|consen  253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT  331 (425)
T ss_pred             hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence            55667778888999999999999999999874     3444444 888999887655 7889999999999999999743

>KOG4497|consensus

Probab=98.23  E-value=6.4e-06  Score=52.39  Aligned_cols=74  Identities=12%  Similarity=0.189  Sum_probs=59.7

Q ss_pred             CCeEEEEECCCCCEEEE-EeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEee-cCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVS-GHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGG-YDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~  122 (125)
                      +.|.-+-|..+..+++. ...++.|.+|++...+-...+.....++.+++|+|||++|...+ .|-.|++|.+.+.
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~  124 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ  124 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence            56667778877766544 56788999999998888888887788899999999997776655 5889999998764

>KOG1275|consensus

Probab=98.23  E-value=1.3e-05  Score=56.87  Aligned_cols=69  Identities=22%  Similarity=0.349  Sum_probs=57.3

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec---------CCeEEEEeCC
Q psy14458         50 PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY---------DNKLVLTDLQ  120 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------d~~i~~~~~~  120 (125)
                      .+.-|.  .+++++++|...|.|-+-|.++-+.++++.+|.+.+..+..  +|+.+++++.         |..++|||+|
T Consensus       179 ~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLR  254 (1118)
T KOG1275|consen  179 GVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLR  254 (1118)
T ss_pred             ceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhh
Confidence            344444  36789999999999999999999999999999999987665  8888988864         6678999998


Q ss_pred             CC
Q psy14458        121 GT  122 (125)
Q Consensus       121 ~~  122 (125)
                      ..
T Consensus       255 mm  256 (1118)
T KOG1275|consen  255 MM  256 (1118)
T ss_pred             hh
Confidence            64

>KOG1912|consensus

Probab=98.21  E-value=3.4e-05  Score=54.12  Aligned_cols=103  Identities=15%  Similarity=0.199  Sum_probs=79.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC----CCEEEEEeCCCcEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS----GRLMVSGHEDSSCVLYD   76 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~~~d   76 (125)
                      |+++.-.|+|-+||......+..+..+..++                    -.++|-+.    ..+++.-....++.+|+
T Consensus        82 iAsaD~~GrIil~d~~~~s~~~~l~~~~~~~--------------------qdl~W~~~rd~Srd~LlaIh~ss~lvLwn  141 (1062)
T KOG1912|consen   82 IASADISGRIILVDFVLASVINWLSHSNDSV--------------------QDLCWVPARDDSRDVLLAIHGSSTLVLWN  141 (1062)
T ss_pred             EEeccccCcEEEEEehhhhhhhhhcCCCcch--------------------hheeeeeccCcchheeEEecCCcEEEEEE
Confidence            4677778999999999888888888777444                    45555442    24566666778899999


Q ss_pred             cCCCceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCCC
Q psy14458         77 IRGSRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..+|+.+...........|+.+.| |.+++..-+..|.+.+.+.-...
T Consensus       142 tdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s  189 (1062)
T KOG1912|consen  142 TDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS  189 (1062)
T ss_pred             ccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCC
Confidence            999999988886667778899999 88888888888888777654433

>smart00320 WD40 WD40 repeats

Probab=98.20  E-value=9e-06  Score=34.44  Aligned_cols=28  Identities=29%  Similarity=0.703  Sum_probs=25.9

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEE
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYD   76 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d   76 (125)
                      ..+.+++|++.+.++++++.|+.+++|+
T Consensus        13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       13 GPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            7889999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1912|consensus

Probab=98.19  E-value=2.5e-05  Score=54.76  Aligned_cols=112  Identities=18%  Similarity=0.176  Sum_probs=86.0

Q ss_pred             eecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCC
Q psy14458          3 SGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS--GRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         3 t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      .-+....|.+-|..+.+.++.+..|...|+.++|.+.....          -.++|.  .-.+++++..|.|-+||...+
T Consensus        30 AygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~----------~llS~~~~~lliAsaD~~GrIil~d~~~~   99 (1062)
T KOG1912|consen   30 AYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPR----------DLLSPSSSQLLIASADISGRIILVDFVLA   99 (1062)
T ss_pred             EEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCch----------hccCccccceeEEeccccCcEEEEEehhh
Confidence            33445678888988889999998899888888887643222          123322  346788889999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEcc---CC-CeEEEeecCCeEEEEeCCCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSP---SA-YYLLTGGYDNKLVLTDLQGTMR  124 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~---~~-~~~~~~~~d~~i~~~~~~~~~~  124 (125)
                      ..+..+..+...+..++|-|   +. .++++-..-.++.+||..+|.+
T Consensus       100 s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen  100 SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence            88888888889999999877   33 5677777788999999888754

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.19  E-value=0.00014  Score=48.70  Aligned_cols=72  Identities=13%  Similarity=0.089  Sum_probs=49.1

Q ss_pred             CeEEEEECCCCCEEE-EEeCCC--cEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec-C--CeEEEEeCCCC
Q psy14458         50 PVSALCVDPSGRLMV-SGHEDS--SCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY-D--NKLVLTDLQGT  122 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~-~~~~~~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d--~~i~~~~~~~~  122 (125)
                      ......|+|+++.++ +.+.++  .|+++|+.+++.. .+..+........|+|||+.++..+. +  ..|+++++.++
T Consensus       244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g  321 (430)
T PRK00178        244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG  321 (430)
T ss_pred             CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            445689999998776 444454  5888898877643 34445555667889999988776553 3  35777777654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.18  E-value=0.00039  Score=43.46  Aligned_cols=76  Identities=18%  Similarity=0.336  Sum_probs=51.7

Q ss_pred             CCCCeEEEEECCCCCEEEEEe-CCC----------cEEEEEcCCCce--------------------e---EE---e--C
Q psy14458         47 QGSPVSALCVDPSGRLMVSGH-EDS----------SCVLYDIRGSRP--------------------L---QT---F--K   87 (125)
Q Consensus        47 ~~~~i~~~~~~~~~~~~~~~~-~~~----------~i~~~d~~~~~~--------------------~---~~---~--~   87 (125)
                      ....|+++.++|..++|+.|+ ...          -+..|.+-.+.+                    +   ..   +  .
T Consensus       146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~  225 (282)
T PF15492_consen  146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ  225 (282)
T ss_pred             CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence            356899999999877776654 221          245565532110                    0   00   0  0


Q ss_pred             -CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         88 -PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        88 -~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                       .....|..|..+|||..+++...+|.|.+|++-+-
T Consensus       226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence             12456889999999999999999999999998653

>KOG3621|consensus

Probab=98.18  E-value=1.4e-05  Score=55.06  Aligned_cols=101  Identities=19%  Similarity=0.288  Sum_probs=73.8

Q ss_pred             CeeecCCCeEEEEECCCCcceee-ecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQT-FKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      ++.|+.-|.+++|+...++.... ..+..                    ..+..++++++..+++.|+..|.|.++.+..
T Consensus        48 l~~GsS~G~lyl~~R~~~~~~~~~~~~~~--------------------~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   48 LAMGSSAGSVYLYNRHTGEMRKLKNEGAT--------------------GITCVRSVSSVEYLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             EEEecccceEEEEecCchhhhcccccCcc--------------------ceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence            35677778888888655443221 11111                    4567778899999999999999999998876


Q ss_pred             Cce---eE--EeC-CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         80 SRP---LQ--TFK-PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        80 ~~~---~~--~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      +.+   ..  ... .|+..|++++|++++.-+.+|-..|+|..-.+.+
T Consensus       108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            421   11  121 3678899999999999999999999998887765

>KOG4640|consensus

Probab=98.18  E-value=2e-05  Score=53.82  Aligned_cols=52  Identities=25%  Similarity=0.460  Sum_probs=42.3

Q ss_pred             CCeE-EEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC-CCCCceeEEEEcc
Q psy14458         49 SPVS-ALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIRFSP  100 (125)
Q Consensus        49 ~~i~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~  100 (125)
                      ..++ +++|.|+|+.++.|-.||+|++.|+.++..+..+. .....|.++.|.+
T Consensus        62 ~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   62 ENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             CccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            5555 99999999999999999999999999988777632 2455677777753

>KOG2041|consensus

Probab=98.17  E-value=1.1e-05  Score=56.09  Aligned_cols=115  Identities=6%  Similarity=0.059  Sum_probs=81.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      ++.|+.||.+++.-+.+...-....+ -.....+.    ......+|+..|..+.|+.+...+-+.+.+|.|-+|-+.++
T Consensus        29 IAcgG~dGlLKVlKl~t~t~d~~~~g-laa~snLs----mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg  103 (1189)
T KOG2041|consen   29 IACGGADGLLKVLKLGTDTTDLNKSG-LAAASNLS----MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG  103 (1189)
T ss_pred             EEeccccceeEEEEccccCCcccccc-cccccccc----hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecc
Confidence            47889999999998876543222221 11111111    11223356688999999999999999999999999999988


Q ss_pred             ceeEEeCC--CCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         81 RPLQTFKP--HTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        81 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      +....+..  .++.|.+++|+.||.-|...-.||.|.+=.+.
T Consensus       104 sW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd  145 (1189)
T KOG2041|consen  104 SWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD  145 (1189)
T ss_pred             cHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence            76555442  34568899999999999888888887664443

>KOG4190|consensus

Probab=98.17  E-value=2e-06  Score=58.19  Aligned_cols=79  Identities=18%  Similarity=0.185  Sum_probs=62.5

Q ss_pred             ccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-------CceeEEeCCCCCceeEEEEccCCCeEEEeecCC
Q psy14458         40 TTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG-------SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN  112 (125)
Q Consensus        40 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~  112 (125)
                      .......|...|..++--.+.+-+++++.|++|++|.++.       ..+..++..|+.+|+.+.|-.+-+.++++  |+
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            3344456667888877777788899999999999999975       23566778999999999998887777654  78


Q ss_pred             eEEEEeCC
Q psy14458        113 KLVLTDLQ  120 (125)
Q Consensus       113 ~i~~~~~~  120 (125)
                      .|.+||.-
T Consensus       805 giHlWDPF  812 (1034)
T KOG4190|consen  805 GIHLWDPF  812 (1034)
T ss_pred             cceeeccc
Confidence            89999963

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.13  E-value=0.00016  Score=48.47  Aligned_cols=73  Identities=14%  Similarity=0.156  Sum_probs=48.1

Q ss_pred             eEEEEECCCCCEEEEEe-CCCcEEEE--EcCC-CceeEEeCCCCCceeEEEEccCCCeEEEeecC---CeEEEEeCCCCC
Q psy14458         51 VSALCVDPSGRLMVSGH-EDSSCVLY--DIRG-SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD---NKLVLTDLQGTM  123 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~-~~~~i~~~--d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d---~~i~~~~~~~~~  123 (125)
                      ....+|+|+|+.++..+ .+|...+|  ++.. +.....+..+...+....|+|||+.|+..+.+   ..|.+||+.++.
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~  362 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR  362 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            45679999998776655 45654444  4432 22233344444566788999999988876543   468999987653

>KOG1354|consensus

Probab=98.13  E-value=2.8e-05  Score=49.78  Aligned_cols=120  Identities=14%  Similarity=0.253  Sum_probs=80.4

Q ss_pred             CeeecCCCeEEEEECCCCccee---ee--cCCCCCeEEEEec-----------CcccccccCCCCCeEEEEECCCCCEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQ---TF--KPHTADVRSIHLD-----------HYTTEAGTRQGSPVSALCVDPSGRLMV   64 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~---~~--~~~~~~i~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~   64 (125)
                      |+...+|.+|++|-+.......   .+  .+....+.+++..           ........+|.-.|+++.++.+++.++
T Consensus       101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l  180 (433)
T KOG1354|consen  101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL  180 (433)
T ss_pred             EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence            3567899999999886432111   11  1122333333321           122333447778899999999999888


Q ss_pred             EEeCCCcEEEEEcCCCc---eeEEeCCCCC-----ceeEEEEcc-CCCeEEEeecCCeEEEEeCCC
Q psy14458         65 SGHEDSSCVLYDIRGSR---PLQTFKPHTA-----DVRSIRFSP-SAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        65 ~~~~~~~i~~~d~~~~~---~~~~~~~~~~-----~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ++ +|=.|.+|++.-..   .+..+++++.     -|++..|+| ...+++-.+..|+|++.|||.
T Consensus       181 SA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  181 SA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             ec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence            88 57889999986432   2344455543     477889999 457778888999999999984

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.12  E-value=0.00012  Score=49.27  Aligned_cols=76  Identities=18%  Similarity=0.201  Sum_probs=51.5

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEE-eecCCe--EEEEeC
Q psy14458         46 RQGSPVSALCVDPSGRLMVSGHE-DS--SCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLT-GGYDNK--LVLTDL  119 (125)
Q Consensus        46 ~~~~~i~~~~~~~~~~~~~~~~~-~~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~~--i~~~~~  119 (125)
                      .....+....|+|+++.++..+. ++  .|+++|+.+++... +....+......|+|||+.|+. .+.++.  |+++|+
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence            34456778999999988876543 33  58899988776432 2222333457899999997765 455564  778888


Q ss_pred             CCC
Q psy14458        120 QGT  122 (125)
Q Consensus       120 ~~~  122 (125)
                      .++
T Consensus       294 ~tg  296 (448)
T PRK04792        294 ATK  296 (448)
T ss_pred             CCC
Confidence            765

>KOG4532|consensus

Probab=98.11  E-value=0.00028  Score=44.06  Aligned_cols=75  Identities=19%  Similarity=0.256  Sum_probs=56.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc-eeE----EeCCCCCceeEEEEccCC--CeEEEeecCCeEEEEeCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR-PLQ----TFKPHTADVRSIRFSPSA--YYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~----~~~~~~~~v~~~~~~~~~--~~~~~~~~d~~i~~~~~~~  121 (125)
                      +.--+..|+.....++++..||++.|||++... +..    .-..|++.++.+.|+|-|  .+|.-.=+-+.+.+.|+|+
T Consensus       204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            444577899999999999999999999998732 222    223588999999999844  3555555677899999987


Q ss_pred             CC
Q psy14458        122 TM  123 (125)
Q Consensus       122 ~~  123 (125)
                      ..
T Consensus       284 ~~  285 (344)
T KOG4532|consen  284 YV  285 (344)
T ss_pred             Cc
Confidence            64

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.10  E-value=0.00026  Score=38.35  Aligned_cols=88  Identities=18%  Similarity=0.255  Sum_probs=59.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |+.|++|..|++|+-  ...+..+...                     ..+++++-... ..++-+.++|+|-+|+-  .
T Consensus        18 LlvGs~D~~IRvf~~--~e~~~Ei~e~---------------------~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~   71 (111)
T PF14783_consen   18 LLVGSDDFEIRVFKG--DEIVAEITET---------------------DKVTSLCSLGG-GRFAYALANGTVGVYDR--S   71 (111)
T ss_pred             EEEecCCcEEEEEeC--CcEEEEEecc---------------------cceEEEEEcCC-CEEEEEecCCEEEEEeC--c
Confidence            578999999999984  3455555533                     46677766655 66888999999999974  3


Q ss_pred             ceeEEeCCCCCceeEEEEcc-C--C-CeEEEeecCCeEE
Q psy14458         81 RPLQTFKPHTADVRSIRFSP-S--A-YYLLTGGYDNKLV  115 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~-~--~-~~~~~~~~d~~i~  115 (125)
                      +.+...+ .+..+.++.+.. +  | .-|++|..+|.|-
T Consensus        72 ~RlWRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   72 QRLWRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ceeeeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            3343344 344466665433 3  3 4788999988874

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.09  E-value=0.00026  Score=47.49  Aligned_cols=73  Identities=16%  Similarity=0.197  Sum_probs=51.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec---CCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHED---SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY---DNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~  122 (125)
                      ..+....|+|+++.++....+   ..|.+||+.+++... +......+....|+|||+.|+..+.   +..|.++|+.++
T Consensus       327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            456678999999988766543   358999998876543 3323345677899999988765432   456888888765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.09  E-value=0.00026  Score=47.76  Aligned_cols=71  Identities=15%  Similarity=0.141  Sum_probs=48.1

Q ss_pred             eEEEEECCCCCEEEE-EeCCCc--EEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec-C--CeEEEEeCCCC
Q psy14458         51 VSALCVDPSGRLMVS-GHEDSS--CVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY-D--NKLVLTDLQGT  122 (125)
Q Consensus        51 i~~~~~~~~~~~~~~-~~~~~~--i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d--~~i~~~~~~~~  122 (125)
                      .....|+|+++.++. .+.++.  |+++|+.+++.. .+..+........|+||++.++..+. +  ..|+++|+.++
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g  340 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG  340 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            346789999987754 556665  788888776543 34444455667899999998876553 3  34666677654

>KOG1354|consensus

Probab=98.08  E-value=3.8e-05  Score=49.21  Aligned_cols=113  Identities=21%  Similarity=0.302  Sum_probs=73.2

Q ss_pred             eeecCCCeEEEEECCCCcc----eeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q psy14458          2 VSGHEDSSCVLYDIRGSRP----LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDI   77 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~   77 (125)
                      +-++..|+|++-|++....    ...+.....+...        .....--..|..+.|+.+|+++++-+ --+|++||+
T Consensus       230 ~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r--------sffseiIsSISDvKFs~sGryilsRD-yltvk~wD~  300 (433)
T KOG1354|consen  230 VYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR--------SFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDL  300 (433)
T ss_pred             EEecCCCcEEEeechhhhhhcchhhhhccccCCcch--------hhHHHHhhhhhceEEccCCcEEEEec-cceeEEEec
Confidence            4567778888888874321    1112222211110        00001115788999999999998873 467999999


Q ss_pred             -CCCceeEEeCCCC------------Cce---eEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         78 -RGSRPLQTFKPHT------------ADV---RSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        78 -~~~~~~~~~~~~~------------~~v---~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                       +..+++..+..|.            ..|   ..++|+.++.++.+|+....++++++..+.
T Consensus       301 nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  301 NMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             cccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence             5566666665442            122   346888889999999999999999965543

>KOG1334|consensus

Probab=98.06  E-value=7.9e-06  Score=54.16  Aligned_cols=76  Identities=20%  Similarity=0.403  Sum_probs=66.1

Q ss_pred             ccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC-CCCCceeEEEEcc--CCCeEEEeecCCeEEEEeC
Q psy14458         44 GTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIRFSP--SAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        44 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~~~~~~~d~~i~~~~~  119 (125)
                      +..|..-+..+.|...|..+++|+.|..|-+||+..+.....|. +|...|..-.|-|  +.+.+++++.||.+++-.+
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            34677889999999999999999999999999999988877776 7998888888988  5578999999999988654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.02  E-value=3.3e-05  Score=52.27  Aligned_cols=57  Identities=28%  Similarity=0.412  Sum_probs=45.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |+.|+.||+|.+||...+..... + ..                    -..+.++|+|+|..++.|+..|.+.+||...
T Consensus       274 LvlGC~DgSiiLyD~~~~~t~~~-k-a~--------------------~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  274 LVLGCEDGSIILYDTTRGVTLLA-K-AE--------------------FIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEEEecCCeEEEEEcCCCeeeee-e-ec--------------------ccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            57899999999999876543322 1 12                    4568899999999999999999999999863

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.02  E-value=0.00035  Score=45.94  Aligned_cols=98  Identities=16%  Similarity=0.180  Sum_probs=61.1

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      +.++.++.+.-+|..+++.+..+....                    ........  ++..++.++.++.++.+|..+++
T Consensus        69 ~v~~~~g~v~a~d~~tG~~~W~~~~~~--------------------~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~  126 (377)
T TIGR03300        69 YAADADGTVVALDAETGKRLWRVDLDE--------------------RLSGGVGA--DGGLVFVGTEKGEVIALDAEDGK  126 (377)
T ss_pred             EEECCCCeEEEEEccCCcEeeeecCCC--------------------CcccceEE--cCCEEEEEcCCCEEEEEECCCCc
Confidence            445666777777777777665544222                    10111122  46677888899999999999998


Q ss_pred             eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         82 PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+...... ..+.+.... .+..++.++.++.++.+|.+++.
T Consensus       127 ~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~  166 (377)
T TIGR03300       127 ELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGE  166 (377)
T ss_pred             EeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCc
Confidence            87766532 222211111 34466777789999999987653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=98.01  E-value=3.8e-05  Score=35.21  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=29.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRP   82 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~   82 (125)
                      ..|.+++|+|+..+++.++.+|.|.++.+ +++.
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            67899999999999999999999999987 4443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.01  E-value=0.00018  Score=47.30  Aligned_cols=58  Identities=16%  Similarity=0.094  Sum_probs=42.3

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEE
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLT  117 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~  117 (125)
                      .+..++.++.+|.++++|..+++.+..++.+...+..--...++ .|+.++.||.|+.+
T Consensus       319 ~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       319 VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence            35688889999999999999999988887555433322112243 57888899998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.97  E-value=0.0012  Score=43.26  Aligned_cols=71  Identities=14%  Similarity=0.111  Sum_probs=56.7

Q ss_pred             EEEEECCCCCEEEEEe----------CCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCC-eEEEee-cCCeEEEEeC
Q psy14458         52 SALCVDPSGRLMVSGH----------EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAY-YLLTGG-YDNKLVLTDL  119 (125)
Q Consensus        52 ~~~~~~~~~~~~~~~~----------~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-~d~~i~~~~~  119 (125)
                      .-++++|+++.++...          ..+.|.++|..+++.+..+. -...+..+.++||++ +++..+ .++.|.+.|.
T Consensus       251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence            3499999988777632          22579999999999998887 355788999999999 877666 5788999998


Q ss_pred             CCCC
Q psy14458        120 QGTM  123 (125)
Q Consensus       120 ~~~~  123 (125)
                      .++.
T Consensus       330 ~t~k  333 (352)
T TIGR02658       330 ETGK  333 (352)
T ss_pred             cCCe
Confidence            7763

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4649|consensus

Probab=97.91  E-value=0.00046  Score=43.05  Aligned_cols=72  Identities=11%  Similarity=0.135  Sum_probs=54.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCcee-EEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVR-SIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ..+.+-+.- -+++++.|+..|.+++.+.++++....+..- +.|. .....+++..|..|++|+..+..|.++.
T Consensus        53 ~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~  125 (354)
T KOG4649|consen   53 VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY  125 (354)
T ss_pred             ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEeccccc
Confidence            444443333 4778999999999999999999888777633 2232 2445679999999999999999998753

>KOG1275|consensus

Probab=97.89  E-value=0.00053  Score=49.24  Aligned_cols=118  Identities=13%  Similarity=0.163  Sum_probs=80.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCC----------------------------CCCeE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQ----------------------------GSPVS   52 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------------------------~~~i~   52 (125)
                      |.+|...|+|.+-|..+.+.+..+..|.+.|......+.........                            ...-.
T Consensus       190 lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~  269 (1118)
T KOG1275|consen  190 LFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ  269 (1118)
T ss_pred             EEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch
Confidence            45788889999999999999999999998888777655332222100                            01113


Q ss_pred             EEEECCCC-CEEEEEeCCCcEEEEEcCC---C-ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         53 ALCVDPSG-RLMVSGHEDSSCVLYDIRG---S-RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        53 ~~~~~~~~-~~~~~~~~~~~i~~~d~~~---~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      -+.|+|.- ..++..+..|...+.|..+   . -...-+..-...+..++++++++.++.|-.+|.|.+|.
T Consensus       270 flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            34455654 4566777777777777332   2 11222223345588999999999999999999999996

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.88  E-value=0.00094  Score=49.60  Aligned_cols=74  Identities=15%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             CCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCceeEE-------------eCCC--------CCceeEEEEccCCCeEE
Q psy14458         49 SPVSALCVDPSGRL-MVSGHEDSSCVLYDIRGSRPLQT-------------FKPH--------TADVRSIRFSPSAYYLL  106 (125)
Q Consensus        49 ~~i~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~-------------~~~~--------~~~v~~~~~~~~~~~~~  106 (125)
                      .....++++|++.. +++-..++.|++||+.++.....             +...        -.....++++++|.+++
T Consensus       740 ~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV  819 (1057)
T PLN02919        740 AQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV  819 (1057)
T ss_pred             cCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence            34678999999874 45556678999999876542211             0000        11235789999999999


Q ss_pred             EeecCCeEEEEeCCCC
Q psy14458        107 TGGYDNKLVLTDLQGT  122 (125)
Q Consensus       107 ~~~~d~~i~~~~~~~~  122 (125)
                      +-+.++.|++||..++
T Consensus       820 ADs~N~rIrviD~~tg  835 (1057)
T PLN02919        820 ADSYNHKIKKLDPATK  835 (1057)
T ss_pred             EECCCCEEEEEECCCC
Confidence            9999999999998754

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.87  E-value=0.00032  Score=42.93  Aligned_cols=97  Identities=15%  Similarity=0.168  Sum_probs=63.5

Q ss_pred             CCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEE
Q psy14458          6 EDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQT   85 (125)
Q Consensus         6 ~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~   85 (125)
                      .++.|..||+++++.+....... ++                 ....+. ..+.+..++.++.++.++.+|..+++.+..
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~-~~-----------------~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~   61 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGP-GI-----------------GGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWR   61 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSS-SC-----------------SSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCC-CC-----------------CCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence            37899999999999888775311 00                 111211 122466677778999999999999998887


Q ss_pred             eCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         86 FKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        86 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.. ...+.... ..++..++.++.++.+..+|..++.
T Consensus        62 ~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~   97 (238)
T PF13360_consen   62 FDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGK   97 (238)
T ss_dssp             EEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSC
T ss_pred             eec-ccccccee-eecccccccccceeeeEecccCCcc
Confidence            774 33322211 2244556666678899999987764

...

>KOG3914|consensus

Probab=97.83  E-value=5.4e-05  Score=49.00  Aligned_cols=40  Identities=25%  Similarity=0.347  Sum_probs=32.9

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC
Q psy14458         47 QGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK   87 (125)
Q Consensus        47 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~   87 (125)
                      |...|..+++-++.. |++++.|+++++||+++++.+..+.
T Consensus       193 H~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  193 HKEFVSTISLTDNYL-LLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             cHhheeeeeeccCce-eeecCCCCcEEEEecccCCcccccc
Confidence            338899999887665 8999999999999999988776554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.79  E-value=0.00049  Score=42.12  Aligned_cols=100  Identities=18%  Similarity=0.116  Sum_probs=65.2

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      ++++.++.+..||+.+|+.+..+.... ++                 ...  .  ...+..++.++.++.++.+|..+++
T Consensus        40 ~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~-----------------~~~--~--~~~~~~v~v~~~~~~l~~~d~~tG~   97 (238)
T PF13360_consen   40 YVASGDGNLYALDAKTGKVLWRFDLPG-PI-----------------SGA--P--VVDGGRVYVGTSDGSLYALDAKTGK   97 (238)
T ss_dssp             EEEETTSEEEEEETTTSEEEEEEECSS-CG-----------------GSG--E--EEETTEEEEEETTSEEEEEETTTSC
T ss_pred             EEEcCCCEEEEEECCCCCEEEEeeccc-cc-----------------cce--e--eecccccccccceeeeEecccCCcc
Confidence            455688889999998898877766422 11                 011  1  1135566777788899999999999


Q ss_pred             eeEEe-CCCC---CceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         82 PLQTF-KPHT---ADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        82 ~~~~~-~~~~---~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+... ....   ..........++..++.+..++.+..+|++++.
T Consensus        98 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~  143 (238)
T PF13360_consen   98 VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK  143 (238)
T ss_dssp             EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred             eeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence            88874 3221   111122233357788888889999999988764

...

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.79  E-value=0.00022  Score=32.70  Aligned_cols=30  Identities=17%  Similarity=0.361  Sum_probs=27.8

Q ss_pred             CCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         90 TADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        90 ~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      ...|.+++|+|...+++.++.+|.|.++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            456899999999999999999999999988

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.79  E-value=0.0018  Score=46.43  Aligned_cols=69  Identities=19%  Similarity=0.293  Sum_probs=50.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      +....|++-..+| +++.|+.+|-||+||-...+.-..+.+...+|.+|..+.||+++++.+..- +.+++
T Consensus       577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ty-LlLi~  645 (794)
T PF08553_consen  577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTY-LLLID  645 (794)
T ss_pred             CCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecce-EEEEE
Confidence            3456777776655 689999999999999433233334556788999999999999998887654 44444

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2444|consensus

Probab=97.78  E-value=0.0002  Score=43.46  Aligned_cols=63  Identities=16%  Similarity=0.150  Sum_probs=48.3

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCC-CceeEEEEccCCCeEEEe--ecCCeEEEEeCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHT-ADVRSIRFSPSAYYLLTG--GYDNKLVLTDLQG  121 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~--~~d~~i~~~~~~~  121 (125)
                      ++.+..+++.+|.|+.|+...++.+.....|. ..+.....+..++++...  |.|..++.|++..
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            44578899999999999998888777666676 455555556667777777  8888888888753

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.78  E-value=0.0043  Score=41.70  Aligned_cols=74  Identities=9%  Similarity=0.008  Sum_probs=46.8

Q ss_pred             CCeEEEEECCCCCEEEE-EeCC--CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec-CC--eEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVS-GHED--SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY-DN--KLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~-~~~~--~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~--~i~~~~~~~~  122 (125)
                      .......|+|++..++. .+.+  ..|+++|+.+++.. .+..+........|+|||+.|+-.+. .+  .|.+.|+.++
T Consensus       233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g  311 (419)
T PRK04043        233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG  311 (419)
T ss_pred             CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            44556789999976654 3333  45888888776533 34333333345689999987766653 23  5777787655


Q ss_pred             C
Q psy14458        123 M  123 (125)
Q Consensus       123 ~  123 (125)
                      .
T Consensus       312 ~  312 (419)
T PRK04043        312 S  312 (419)
T ss_pred             C
Confidence            3

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.74  E-value=0.0016  Score=35.39  Aligned_cols=67  Identities=18%  Similarity=0.218  Sum_probs=46.6

Q ss_pred             eEEEEECC---CC-CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         51 VSALCVDP---SG-RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        51 i~~~~~~~---~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      |+++++..   ++ +.|+.|++|..|++|+  ..+.+.++. ....|.++.-... ..++-+-.+|+|-+|+...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc
Confidence            44555544   33 7899999999999995  456677776 4456777766655 4577777888887776543

>KOG1645|consensus

Probab=97.69  E-value=0.00028  Score=46.19  Aligned_cols=59  Identities=14%  Similarity=0.280  Sum_probs=48.7

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~   80 (125)
                      ..++.+++|+|.|+++......+..+                     ..+++++|..+. +++..|...|.|.+||.+..
T Consensus       210 ~~asl~nkiki~dlet~~~vssy~a~---------------------~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  210 GLASLGNKIKIMDLETSCVVSSYIAY---------------------NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             eeeccCceEEEEecccceeeeheecc---------------------CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            46788899999999988887777655                     467888888765 78999999999999999874


Q ss_pred             c
Q psy14458         81 R   81 (125)
Q Consensus        81 ~   81 (125)
                      +
T Consensus       269 ~  269 (463)
T KOG1645|consen  269 E  269 (463)
T ss_pred             C
Confidence            3

>KOG2315|consensus

Probab=97.64  E-value=0.0028  Score=43.19  Aligned_cols=72  Identities=21%  Similarity=0.464  Sum_probs=56.2

Q ss_pred             CCCeEEEEECCCCCEEEE--EeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec---CCeEEEEeCCCC
Q psy14458         48 GSPVSALCVDPSGRLMVS--GHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY---DNKLVLTDLQGT  122 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~--~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~  122 (125)
                      ..+|.++.|+|++..++.  |-.-..+.++|++ +..+..+.  .++-+++.|+|.|++++.++.   -|.+-+||+.+.
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~  346 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR  346 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence            579999999999976644  5566778999875 55565554  456678999999999988775   588999998763

>KOG0309|consensus

Probab=97.62  E-value=0.00037  Score=49.09  Aligned_cols=80  Identities=14%  Similarity=0.309  Sum_probs=62.8

Q ss_pred             CCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCC-ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         46 RQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRGS-RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        46 ~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .|+..++.+-|+|+. ..+++++.|..+..||.+.. .++..+..-...-..+.|+...-.+.+.++.+.|.+||++.+.
T Consensus       112 ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs  191 (1081)
T KOG0309|consen  112 GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS  191 (1081)
T ss_pred             cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC
Confidence            355788999999875 67899999999999999874 5666665444455679999866677777888999999999876


Q ss_pred             CC
Q psy14458        124 RP  125 (125)
Q Consensus       124 ~~  125 (125)
                      .|
T Consensus       192 ~p  193 (1081)
T KOG0309|consen  192 TP  193 (1081)
T ss_pred             cc
Confidence            54

>KOG3617|consensus

Probab=97.60  E-value=0.00023  Score=50.91  Aligned_cols=72  Identities=15%  Similarity=0.227  Sum_probs=63.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      -.++++||+|..-.++.|=..|.+.+|...+.+.......|..++.-+.|+|+|..+.++-.=|.+.+|...
T Consensus        60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            456789999999889999999999999877766665566899999999999999999999999999999765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.58  E-value=0.00049  Score=43.93  Aligned_cols=78  Identities=15%  Similarity=0.305  Sum_probs=58.6

Q ss_pred             cccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc---eeEEeCCCCC-----ceeEEEEccC-CCeEEEeecCCe
Q psy14458         43 AGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR---PLQTFKPHTA-----DVRSIRFSPS-AYYLLTGGYDNK  113 (125)
Q Consensus        43 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~-----~v~~~~~~~~-~~~~~~~~~d~~  113 (125)
                      ...+|.-.+.++.+..+...++++ .+-.|.+|++.-..   .+..+++|+.     -+++..|+|. ..++.-.+..|.
T Consensus       167 yaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~  245 (460)
T COG5170         167 YANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE  245 (460)
T ss_pred             ccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence            345677889999999998888877 57789999986532   3444556653     4778899994 466667778899


Q ss_pred             EEEEeCCC
Q psy14458        114 LVLTDLQG  121 (125)
Q Consensus       114 i~~~~~~~  121 (125)
                      |++.|+|.
T Consensus       246 Ikl~DlRq  253 (460)
T COG5170         246 IKLNDLRQ  253 (460)
T ss_pred             EEehhhhh
Confidence            99999984

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.57  E-value=0.0041  Score=40.64  Aligned_cols=73  Identities=21%  Similarity=0.296  Sum_probs=53.3

Q ss_pred             CCeEEEEECCCCCEEEEEeC----CCcEEEEEcCCC--c--eeEEeCCCCCceeEEEEccCCCeEEEeec-CCeEEEEeC
Q psy14458         49 SPVSALCVDPSGRLMVSGHE----DSSCVLYDIRGS--R--PLQTFKPHTADVRSIRFSPSAYYLLTGGY-DNKLVLTDL  119 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~----~~~i~~~d~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~i~~~~~  119 (125)
                      ....-++++|++++|.+..+    ++.|..|.+...  +  .+...........+++++|++++++++.. ++.+.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            45567889999999988876    468988887664  2  23333323344567999999999998874 899999998


Q ss_pred             CC
Q psy14458        120 QG  121 (125)
Q Consensus       120 ~~  121 (125)
                      ..
T Consensus       117 ~~  118 (345)
T PF10282_consen  117 DD  118 (345)
T ss_dssp             CT
T ss_pred             cC
Confidence            75

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.56  E-value=0.00027  Score=45.05  Aligned_cols=76  Identities=17%  Similarity=0.320  Sum_probs=53.0

Q ss_pred             CCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCC------ceeEEeC----------CCCCceeEEEEccCCCeEEEeecC
Q psy14458         49 SPVSALCVDPSG-RLMVSGHEDSSCVLYDIRGS------RPLQTFK----------PHTADVRSIRFSPSAYYLLTGGYD  111 (125)
Q Consensus        49 ~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~------~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~d  111 (125)
                      .-|++..|+|.. +.+.-.+..|.|++-|++..      +.+....          .--..+..+.|+++|++|++-.. 
T Consensus       222 eVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-  300 (460)
T COG5170         222 EVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-  300 (460)
T ss_pred             HHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-
Confidence            457788899976 45555678899999999842      1111111          11245677899999999988654 


Q ss_pred             CeEEEEeCCCCCCC
Q psy14458        112 NKLVLTDLQGTMRP  125 (125)
Q Consensus       112 ~~i~~~~~~~~~~~  125 (125)
                      -++++||++....|
T Consensus       301 ltvkiwDvnm~k~p  314 (460)
T COG5170         301 LTVKIWDVNMAKNP  314 (460)
T ss_pred             ceEEEEecccccCC
Confidence            57999999876654

>KOG2066|consensus

Probab=97.54  E-value=0.0014  Score=46.40  Aligned_cols=60  Identities=20%  Similarity=0.397  Sum_probs=49.5

Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccC-----CCeEEEeecCCeEEEEe
Q psy14458         57 DPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPS-----AYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        57 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~d~~i~~~~  118 (125)
                      .-+|+++++++.||.|.|-.+-+.+....+. .+.++.+++++|+     .+.+++|+..| +.++.
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e  144 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE  144 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEeh
Confidence            4579999999999999999988887777666 5678899999997     57888888887 66654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.54  E-value=0.0021  Score=40.34  Aligned_cols=67  Identities=16%  Similarity=0.280  Sum_probs=48.0

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCC--ceeEEeCC--CC-CceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         54 LCVDPSGRLMVSGHEDSSCVLYDIRGS--RPLQTFKP--HT-ADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~--~~-~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ++.+++|++++.- .|..|.+-..+..  ..+.....  .. ..=+.++|+||+.+++.+...|+|+++|+.+
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g   74 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG   74 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence            4667788877766 7888888877652  22222221  11 2235799999999999999999999999874

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=97.53  E-value=0.013  Score=42.05  Aligned_cols=78  Identities=22%  Similarity=0.290  Sum_probs=54.4

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC---------Cc---eeEEeC--------CCCCceeEEEEccC---CCe
Q psy14458         48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG---------SR---PLQTFK--------PHTADVRSIRFSPS---AYY  104 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~---------~~---~~~~~~--------~~~~~v~~~~~~~~---~~~  104 (125)
                      ...|..+.++|+|.+++..+..|..-+.-.+.         ++   ...++.        .....|..+.|+|.   +.+
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            36789999999999998888766533322221         11   111111        22346889999994   689


Q ss_pred             EEEeecCCeEEEEeCCCCCCC
Q psy14458        105 LLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus       105 ~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      ++.-..|+++++||+.....|
T Consensus       164 l~vLtsdn~lR~y~~~~~~~p  184 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQHP  184 (717)
T ss_pred             EEEEecCCEEEEEecCCCCCC
Confidence            999999999999999866554

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2041|consensus

Probab=97.53  E-value=0.00066  Score=47.84  Aligned_cols=74  Identities=14%  Similarity=0.115  Sum_probs=62.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc---------------eeEEeCCCCCceeEEEEccCCCeEEEeecCCe
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR---------------PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNK  113 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~  113 (125)
                      ....|+.|+.+..+++.|+.||.+++..+.+..               .-+.+.+|+..|.-+.|+.+.+-+.+.-.+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            678899999999999999999999999875421               12245689999999999999999999999999


Q ss_pred             EEEEeCCCC
Q psy14458        114 LVLTDLQGT  122 (125)
Q Consensus       114 i~~~~~~~~  122 (125)
                      |.+|-+-.+
T Consensus        95 IiVWmlykg  103 (1189)
T KOG2041|consen   95 IIVWMLYKG  103 (1189)
T ss_pred             EEEEeeecc
Confidence            999987554

>KOG2079|consensus

Probab=97.52  E-value=0.00062  Score=49.60  Aligned_cols=69  Identities=20%  Similarity=0.365  Sum_probs=52.5

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCcee---EEEEccCCCeEEEeecCCeEEEEe
Q psy14458         48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVR---SIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      ..++++++|+.+|..+..|-.+|.|.+||...++.+..+..|..++.   .+.+..++..+.++-..|.  +|.
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence            47899999999999999999999999999999888887776655444   3444445555666655564  454

>KOG1832|consensus

Probab=97.51  E-value=0.00025  Score=51.00  Aligned_cols=77  Identities=12%  Similarity=0.133  Sum_probs=65.3

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCC--eEEEEeCCCC
Q psy14458         46 RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN--KLVLTDLQGT  122 (125)
Q Consensus        46 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~--~i~~~~~~~~  122 (125)
                      .+....+|++|+-..+.++.|+-.|.|+++++.+|....+...|..+|+.+.-+-+|..+++.+.-.  -..+|++.+.
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST 1177 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc
Confidence            3457899999999999999999999999999999999999999999999999888998777655432  4677887654

>KOG0882|consensus

Probab=97.50  E-value=0.0018  Score=43.23  Aligned_cols=76  Identities=21%  Similarity=0.178  Sum_probs=60.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC------Cce---------eEEeCCCCCceeEEEEccCCCeEEEeecCC
Q psy14458         48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG------SRP---------LQTFKPHTADVRSIRFSPSAYYLLTGGYDN  112 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~------~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~  112 (125)
                      ..+|.++.+.|.+..+++....|.|..|....      .+.         +..+...+....++.|+|++..+..-+.|.
T Consensus       144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr  223 (558)
T KOG0882|consen  144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR  223 (558)
T ss_pred             cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence            37899999999999999999999999998762      111         222223455678999999999999999999


Q ss_pred             eEEEEeCCCCC
Q psy14458        113 KLVLTDLQGTM  123 (125)
Q Consensus       113 ~i~~~~~~~~~  123 (125)
                      .|+++++.++.
T Consensus       224 kVR~F~~KtGk  234 (558)
T KOG0882|consen  224 KVRGFVFKTGK  234 (558)
T ss_pred             EEEEEEeccch
Confidence            99999988763

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.49  E-value=0.011  Score=39.81  Aligned_cols=72  Identities=8%  Similarity=-0.063  Sum_probs=49.0

Q ss_pred             CeEEEEECCCCCE-EEEEeC---CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEe-ec--CCeEEEEeCCCC
Q psy14458         50 PVSALCVDPSGRL-MVSGHE---DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTG-GY--DNKLVLTDLQGT  122 (125)
Q Consensus        50 ~i~~~~~~~~~~~-~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~--d~~i~~~~~~~~  122 (125)
                      ....-.|+|+++. ++..+.   +..|+++|+.+++...... ..+.+....|+|||+.++.. +.  +..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6678999999974 554333   3459999998876544333 44556678899999766543 33  456888887655

>KOG2314|consensus

Probab=97.47  E-value=0.002  Score=44.09  Aligned_cols=72  Identities=15%  Similarity=0.179  Sum_probs=54.0

Q ss_pred             CCeEEEEECCCCCEEEEEe-----------CCCcEEEEEcCCCceeEEeCCCC--Ccee-EEEEccCCCeEEEeecCCeE
Q psy14458         49 SPVSALCVDPSGRLMVSGH-----------EDSSCVLYDIRGSRPLQTFKPHT--ADVR-SIRFSPSAYYLLTGGYDNKL  114 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~-----------~~~~i~~~d~~~~~~~~~~~~~~--~~v~-~~~~~~~~~~~~~~~~d~~i  114 (125)
                      ..+.-+.|||..++|++-+           +...+.|||+++|.....|..-+  ..+. -+.||.|+++++.-.. ..|
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si  328 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI  328 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence            4577889999999999865           22568999999998888887532  2233 3689999999998877 447


Q ss_pred             EEEeCCC
Q psy14458        115 VLTDLQG  121 (125)
Q Consensus       115 ~~~~~~~  121 (125)
                      .+++..+
T Consensus       329 sIyEtps  335 (698)
T KOG2314|consen  329 SIYETPS  335 (698)
T ss_pred             EEEecCc
Confidence            7776543

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.45  E-value=0.0049  Score=43.13  Aligned_cols=73  Identities=11%  Similarity=0.120  Sum_probs=56.2

Q ss_pred             CCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCce------------eEEeCCCCCceeEEEEccCCCeEEEeecCCeE
Q psy14458         48 GSPVSALCVDPSGRLMVSGH-EDSSCVLYDIRGSRP------------LQTFKPHTADVRSIRFSPSAYYLLTGGYDNKL  114 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i  114 (125)
                      +.....+.++|++++++.++ .+.++.+.|+.+.+.            ....+. ...-.+..|.++|..+.+.-.|..+
T Consensus       320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv  398 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQI  398 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeeccee
Confidence            36778999999999876655 578899999987543            333332 2334578899999999999999999


Q ss_pred             EEEeCCC
Q psy14458        115 VLTDLQG  121 (125)
Q Consensus       115 ~~~~~~~  121 (125)
                      ..||+..
T Consensus       399 ~kwn~~~  405 (635)
T PRK02888        399 VKWNIEA  405 (635)
T ss_pred             EEEehHH
Confidence            9999865

>KOG4649|consensus

Probab=97.44  E-value=0.005  Score=38.64  Aligned_cols=34  Identities=21%  Similarity=0.168  Sum_probs=29.1

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC
Q psy14458         54 LCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK   87 (125)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~   87 (125)
                      ....+++..+..|+.|+..+..|.++..++...+
T Consensus        99 a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             eEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            3456788999999999999999999988887765

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.41  E-value=0.0024  Score=46.91  Aligned_cols=70  Identities=21%  Similarity=0.279  Sum_probs=50.8

Q ss_pred             eEEEEECCCCCEEEEEeC---CCcEEEEEcCCCceeEEeC----CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         51 VSALCVDPSGRLMVSGHE---DSSCVLYDIRGSRPLQTFK----PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      -.+++|-|.|+++++.-.   ...|-+|. ++|.....|.    .....|..+.|++|+..|+....|. |.+|-..+.
T Consensus       259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  259 EGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             cCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence            457899999999988764   34466665 4554443333    3456789999999999999977666 999976553

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.37  E-value=0.0075  Score=42.26  Aligned_cols=61  Identities=16%  Similarity=0.264  Sum_probs=43.9

Q ss_pred             CCCEEEEEeCCCcEEEEEcCC-----CceeEEeCCCCCceeEEEEccCCCeEEEee-cCCeEEEEeCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRG-----SRPLQTFKPHTADVRSIRFSPSAYYLLTGG-YDNKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~  122 (125)
                      +|++...  .++.|.+.|.++     .+.+..+. -....+.+.++|||+++++++ .+.++.+.|+++.
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~  353 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL  353 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence            4444433  356799999887     34444444 556678899999999887766 5999999999764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.35  E-value=0.017  Score=37.53  Aligned_cols=95  Identities=24%  Similarity=0.381  Sum_probs=61.7

Q ss_pred             CCCeEEEEecCc-----ccccccCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCC-Cce--eEEeCCCCCc------
Q psy14458         28 TADVRSIHLDHY-----TTEAGTRQGSPVSALCVDPSGRLMVSGHE-DSSCVLYDIRG-SRP--LQTFKPHTAD------   92 (125)
Q Consensus        28 ~~~i~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~d~~~-~~~--~~~~~~~~~~------   92 (125)
                      .+.|.+..|++.     ........+.+-+-++++++++++++++- .|.|.++-++. +..  ......|.+.      
T Consensus        63 ~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ  142 (346)
T COG2706          63 EGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ  142 (346)
T ss_pred             cCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccc
Confidence            345555555542     11122233455589999999999988874 47799998866 321  1112234444      


Q ss_pred             ----eeEEEEccCCCeEEEee-cCCeEEEEeCCCC
Q psy14458         93 ----VRSIRFSPSAYYLLTGG-YDNKLVLTDLQGT  122 (125)
Q Consensus        93 ----v~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~  122 (125)
                          ++...+.|+++++++.. ....|.+|++..+
T Consensus       143 ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg  177 (346)
T COG2706         143 ESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG  177 (346)
T ss_pred             cCCccceeeeCCCCCEEEEeecCCceEEEEEcccC
Confidence                88899999999998876 3556889988643

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.31  E-value=0.012  Score=39.08  Aligned_cols=58  Identities=14%  Similarity=0.070  Sum_probs=41.8

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeE-EEEccCCCeEEEeecCCeEEEEeC
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRS-IRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      +..++.++.+|.+++.|..+++.+...+.....+.+ ..+  .+..|+.++.||.++.+++
T Consensus       335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        335 NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            567888899999999999999988777643333322 111  3447888899999988764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.30  E-value=0.02  Score=37.50  Aligned_cols=76  Identities=17%  Similarity=0.361  Sum_probs=53.1

Q ss_pred             CCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCC-CceeE---EeC----------CCCCceeEEEEccCCCeEEEee-c
Q psy14458         47 QGSPVSALCVDPSGRLMVSGH-EDSSCVLYDIRG-SRPLQ---TFK----------PHTADVRSIRFSPSAYYLLTGG-Y  110 (125)
Q Consensus        47 ~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~d~~~-~~~~~---~~~----------~~~~~v~~~~~~~~~~~~~~~~-~  110 (125)
                      .+...+.++++|++.+++.+. .+|.+.++++.. +....   .+.          ......+++.++|+++++++.. .
T Consensus        85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG  164 (345)
T PF10282_consen   85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG  164 (345)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred             CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence            346677899999999998887 588899999976 33222   121          1224567899999999887754 4


Q ss_pred             CCeEEEEeCCCC
Q psy14458        111 DNKLVLTDLQGT  122 (125)
Q Consensus       111 d~~i~~~~~~~~  122 (125)
                      ...|.+|++...
T Consensus       165 ~D~v~~~~~~~~  176 (345)
T PF10282_consen  165 ADRVYVYDIDDD  176 (345)
T ss_dssp             TTEEEEEEE-TT
T ss_pred             CCEEEEEEEeCC
Confidence            567999988654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.27  E-value=0.0075  Score=38.66  Aligned_cols=56  Identities=21%  Similarity=0.364  Sum_probs=44.9

Q ss_pred             EEECCCCCEEEEEe-----CCCcEEEEEcC-CCceeEEeCCCCCceeEEEEccCCCeEEEee
Q psy14458         54 LCVDPSGRLMVSGH-----EDSSCVLYDIR-GSRPLQTFKPHTADVRSIRFSPSAYYLLTGG  109 (125)
Q Consensus        54 ~~~~~~~~~~~~~~-----~~~~i~~~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  109 (125)
                      -+||++|++|++.-     ..|.|-|||.. .-+.+.+|..|.-.-+.+.+.|||+.|+.+.
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN  117 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN  117 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence            37999999988864     45789999998 5678888887776677899999997777654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.26  E-value=0.0091  Score=40.53  Aligned_cols=72  Identities=19%  Similarity=0.301  Sum_probs=52.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeE-EeCCCCCceeEEEEccCCCeEEEee------cCCeEEEEe
Q psy14458         49 SPVSALCVDPSGRLMVSGHED---SSCVLYDIRGSRPLQ-TFKPHTADVRSIRFSPSAYYLLTGG------YDNKLVLTD  118 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~------~d~~i~~~~  118 (125)
                      ..-..+.|+|.+++++.++-+   |.+.+||....-.+. .+.+.+  .+-..|+||++++.+..      .|..+.+||
T Consensus       316 ~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~  393 (561)
T COG5354         316 QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD  393 (561)
T ss_pred             cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence            455677899999998886544   779999987665444 555433  23467999999987753      377899999


Q ss_pred             CCCC
Q psy14458        119 LQGT  122 (125)
Q Consensus       119 ~~~~  122 (125)
                      +...
T Consensus       394 v~g~  397 (561)
T COG5354         394 VYGA  397 (561)
T ss_pred             ecCc
Confidence            8654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.12  E-value=0.025  Score=35.11  Aligned_cols=71  Identities=21%  Similarity=0.283  Sum_probs=48.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCC--------CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEE-EeecCCeEEEEeC
Q psy14458         49 SPVSALCVDPSGRLMVSGHED--------SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLL-TGGYDNKLVLTDL  119 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~--------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~d~~i~~~~~  119 (125)
                      ...+.+++.|+|++.++....        |.+..++.. ++...... .-...+.++|+|+++.++ +-+..+.|..+++
T Consensus        86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~  163 (246)
T PF08450_consen   86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL  163 (246)
T ss_dssp             EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEec
Confidence            567899999999987776544        457777766 44333232 234467899999998665 6677888988887


Q ss_pred             CC
Q psy14458        120 QG  121 (125)
Q Consensus       120 ~~  121 (125)
                      ..
T Consensus       164 ~~  165 (246)
T PF08450_consen  164 DA  165 (246)
T ss_dssp             ET
T ss_pred             cc
Confidence            53

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.08  E-value=0.0033  Score=42.49  Aligned_cols=72  Identities=26%  Similarity=0.422  Sum_probs=55.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCe---------------
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNK---------------  113 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~---------------  113 (125)
                      .++..+++||.|.+++.....+ |.+|.......+..+. | ..|..+.|+|++++|.+=+....               
T Consensus        33 ~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~  109 (561)
T COG5354          33 WPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNN  109 (561)
T ss_pred             cchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCc
Confidence            6788999999999998886554 7889877666555555 3 45888999999999988655444               


Q ss_pred             EEEEeCCCCC
Q psy14458        114 LVLTDLQGTM  123 (125)
Q Consensus       114 i~~~~~~~~~  123 (125)
                      +.+||..+++
T Consensus       110 ~~vwd~~sg~  119 (561)
T COG5354         110 VFVWDIASGM  119 (561)
T ss_pred             eeEEeccCce
Confidence            8899887764

>KOG2314|consensus

Probab=97.01  E-value=0.0079  Score=41.37  Aligned_cols=82  Identities=12%  Similarity=0.154  Sum_probs=53.8

Q ss_pred             CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC
Q psy14458          8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK   87 (125)
Q Consensus         8 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~   87 (125)
                      ..++|||+++|.....|.....+.                 ..-.-+.||-++++++.-.. ..|.|++...-.++-.-.
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~-----------------~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks  343 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPY-----------------LKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS  343 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCc-----------------cccceEEeccCCceeEEecc-ceEEEEecCceeeecccc
Confidence            679999999998877766422111                 33456789999999887765 568889876532222111


Q ss_pred             CCCCceeEEEEccCCCeEEE
Q psy14458         88 PHTADVRSIRFSPSAYYLLT  107 (125)
Q Consensus        88 ~~~~~v~~~~~~~~~~~~~~  107 (125)
                      .--..|....|+|.+.+|+-
T Consensus       344 lki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  344 LKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             cCCccccCcccCCCcceEEE
Confidence            12345777888888776654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.00  E-value=0.055  Score=36.92  Aligned_cols=74  Identities=15%  Similarity=0.203  Sum_probs=61.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCCC-cEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDS-SCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..|.-..+..+.+-++.|..|| .+-++|..+++... +...-+.|-++..+|+|+.++.+.....+.+.|+.++.
T Consensus       360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             CceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            4566666776777889999999 79999988776444 55566779999999999999999999999999998874

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.00  E-value=0.03  Score=37.31  Aligned_cols=100  Identities=11%  Similarity=0.064  Sum_probs=59.2

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      +.++.++.+.-+|..+++.+...+... ++.               ..+    .+  .+..++.+..++.++.+|..+++
T Consensus       124 ~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~---------------ssP----~v--~~~~v~v~~~~g~l~ald~~tG~  181 (394)
T PRK11138        124 YIGSEKGQVYALNAEDGEVAWQTKVAG-EAL---------------SRP----VV--SDGLVLVHTSNGMLQALNESDGA  181 (394)
T ss_pred             EEEcCCCEEEEEECCCCCCcccccCCC-cee---------------cCC----EE--ECCEEEEECCCCEEEEEEccCCC
Confidence            345667788888888888776654322 110               011    11  14456677788999999999999


Q ss_pred             eeEEeCCCCCcee-EEEEcc--CCCeEEEeecCCeEEEEeCCCCC
Q psy14458         82 PLQTFKPHTADVR-SIRFSP--SAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        82 ~~~~~~~~~~~v~-~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+..+........ ...-+|  .+..++.++.++.+..+|..++.
T Consensus       182 ~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~  226 (394)
T PRK11138        182 VKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQ  226 (394)
T ss_pred             EeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCCh
Confidence            8877763211100 000122  22346667778888888877653

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.99  E-value=0.0059  Score=27.30  Aligned_cols=32  Identities=22%  Similarity=0.352  Sum_probs=26.2

Q ss_pred             CceeEEEEccCC---CeEEEeecCCeEEEEeCCCC
Q psy14458         91 ADVRSIRFSPSA---YYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        91 ~~v~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +.|+++.|+|+.   .+|+..=..+.+.++|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468899999843   58888888899999999953

It contains a characteristic DLL sequence motif.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.97  E-value=0.08  Score=39.38  Aligned_cols=71  Identities=10%  Similarity=0.124  Sum_probs=55.5

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCcEEEE----EcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         47 QGSPVSALCVDPSGRLMVSGHEDSSCVLY----DIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        47 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      ....|.++.+-++...++.+..+|.|-+.    +..+.. +.....-...|.+++|+||++.++..+.++++.+.+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            44789999999999999999999999888    443322 222223457899999999999999999999987764

>KOG2114|consensus

Probab=96.93  E-value=0.043  Score=39.76  Aligned_cols=76  Identities=16%  Similarity=0.195  Sum_probs=54.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC----CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG----SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.++++++++.+-..++.|-.+|.|..+.-.-    +....-....+.+|+.+.+..++..++-......|.+|.+.+..
T Consensus       125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~  204 (933)
T KOG2114|consen  125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT  204 (933)
T ss_pred             CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence            37889999999999999999999999886421    22222222356789999998888774444444568888877554

>KOG1832|consensus

Probab=96.89  E-value=0.0011  Score=47.90  Aligned_cols=99  Identities=18%  Similarity=0.313  Sum_probs=72.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCc--EEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSS--CVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--i~~~d~~   78 (125)
                      |+.|+-.|.|++|++.+|........|.                    +.++-+--+.+|..+.+.+.-..  .-+|+..
T Consensus      1116 L~vG~~~Geik~~nv~sG~~e~s~ncH~--------------------SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1116 LAVGSHAGEIKIFNVSSGSMEESVNCHQ--------------------SAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             EEeeeccceEEEEEccCccccccccccc--------------------cccccccccCCcceeeeeccccCchHHHhccc
Confidence            4678889999999999999888888888                    66777777778877666554433  4578875


Q ss_pred             C-CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         79 G-SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        79 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      . +...++|..    ..++.|+-.-..-+.|+......+||+++..
T Consensus      1176 s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1176 STGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred             cccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCc
Confidence            4 445555542    3567887665666777777789999998864

>KOG2395|consensus

Probab=96.89  E-value=0.026  Score=38.82  Aligned_cols=67  Identities=19%  Similarity=0.289  Sum_probs=48.2

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         50 PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      ...|.+--.+ -+++.|+.+|-|++||--....-..+.+...+|.++..+.+|++|++.+..- +.+-+
T Consensus       432 nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty-LlLi~  498 (644)
T KOG2395|consen  432 NFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTY-LLLID  498 (644)
T ss_pred             ccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccE-EEEEE
Confidence            3445554433 4789999999999999633333445677888999999999999998877644 33433

>KOG2079|consensus

Probab=96.87  E-value=0.0029  Score=46.41  Aligned_cols=64  Identities=23%  Similarity=0.332  Sum_probs=50.3

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCC-ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGS-RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .+..++.|+..|.+-..|.+.. .++..-..-..+|.+++|+.+|..++.|-.+|.|.+||++.+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~  162 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA  162 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence            4556888999999998887663 222222234578999999999999999999999999999874

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.78  E-value=0.034  Score=37.40  Aligned_cols=76  Identities=18%  Similarity=0.260  Sum_probs=53.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCc-eeEEEEc-cC----------------CCeE-EEee
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTAD-VRSIRFS-PS----------------AYYL-LTGG  109 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~-~~----------------~~~~-~~~~  109 (125)
                      -.+.+++.+|.+.+.+..+.-|.|.++|+.++..++-+++..+. +.=+... +.                ..+| +-+.
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            45789999999999999988899999999988777777754432 1101100 00                1223 3356


Q ss_pred             cCCeEEEEeCCCCCC
Q psy14458        110 YDNKLVLTDLQGTMR  124 (125)
Q Consensus       110 ~d~~i~~~~~~~~~~  124 (125)
                      ..|.|.+|.++.+.+
T Consensus       388 rRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  388 RRGILEVWSMRQGPR  402 (415)
T ss_pred             cCCeEEEEecCCCCE
Confidence            789999999998764

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=96.78  E-value=0.032  Score=34.29  Aligned_cols=64  Identities=5%  Similarity=0.124  Sum_probs=46.5

Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCCCceeEEe------C--------CCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         56 VDPSGRLMVSGHEDSSCVLYDIRGSRPLQTF------K--------PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        56 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~------~--------~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      +...+++++.-+.+|.+++||+.+++.+..-      -        .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            4457888999999999999999987644322      1        1345678888888888777654 4667888754

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.77  E-value=0.067  Score=34.49  Aligned_cols=86  Identities=21%  Similarity=0.298  Sum_probs=57.1

Q ss_pred             cCCCeEEEEECC-CCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEe----------------
Q psy14458          5 HEDSSCVLYDIR-GSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH----------------   67 (125)
Q Consensus         5 ~~d~~i~v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------------   67 (125)
                      ...|.|-|||.. +.+.+..+..+.                    -.-..+.+.|+++.|+.+.                
T Consensus        74 ~g~G~IgVyd~~~~~~ri~E~~s~G--------------------IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl  133 (305)
T PF07433_consen   74 TGRGVIGVYDAARGYRRIGEFPSHG--------------------IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNL  133 (305)
T ss_pred             CCcEEEEEEECcCCcEEEeEecCCC--------------------cChhhEEEcCCCCEEEEEcCCCccCcccCceecCh
Confidence            345778888887 445566665444                    3445566778886666654                


Q ss_pred             --CCCcEEEEEcCCCceeEEeC----CCCCceeEEEEccCCCeEEEeec
Q psy14458         68 --EDSSCVLYDIRGSRPLQTFK----PHTADVRSIRFSPSAYYLLTGGY  110 (125)
Q Consensus        68 --~~~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~  110 (125)
                        .+..+-..|..+++.+....    .|+..++++++.++|..++..-.
T Consensus       134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~  182 (305)
T PF07433_consen  134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQY  182 (305)
T ss_pred             hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEec
Confidence              34455566677777666533    36778999999999877766543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.70  E-value=0.013  Score=38.54  Aligned_cols=62  Identities=19%  Similarity=0.257  Sum_probs=41.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeE-EeCCC----------------CCceeEEEEccCCCeEEEeecC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQ-TFKPH----------------TADVRSIRFSPSAYYLLTGGYD  111 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~----------------~~~v~~~~~~~~~~~~~~~~~d  111 (125)
                      ..+....|+|+++.++... ++.|++.+..+++... +..+.                -+.-..+.|+||+++|+....|
T Consensus        43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            5778899999999988885 6789999877664332 11110                1123568899999999887654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1008|consensus

Probab=96.61  E-value=0.00081  Score=46.64  Aligned_cols=71  Identities=21%  Similarity=0.357  Sum_probs=49.9

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEe-CCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTD-LQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~-~~~  121 (125)
                      ....++||-.+.+++.+|.....+.++|++...... ..-..+.|..+...| .+.++++-. |+.|.+|| .++
T Consensus       155 ~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rn  227 (783)
T KOG1008|consen  155 DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRN  227 (783)
T ss_pred             cCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhhhhhcccceecCCCCCceeccc-cCceeeccchhh
Confidence            445588888888888888888899999987432111 111234566677788 777777765 99999999 443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.59  E-value=0.057  Score=37.18  Aligned_cols=56  Identities=9%  Similarity=0.022  Sum_probs=37.1

Q ss_pred             CCCcEEEEEcCCCceeEEeCCCC--------CceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         68 EDSSCVLYDIRGSRPLQTFKPHT--------ADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        68 ~~~~i~~~d~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+|.+...|..+++.+.......        .....-...-.+..++.++.|+.++.+|..++.
T Consensus       364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~  427 (488)
T cd00216         364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGK  427 (488)
T ss_pred             CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCc
Confidence            46778888888888777665321        111111111255788888899999999998875

The alignment model contains an 8-bladed beta-propeller.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.51  E-value=0.055  Score=36.64  Aligned_cols=71  Identities=23%  Similarity=0.300  Sum_probs=43.6

Q ss_pred             eEEEEECCCCCEEE-EEeCCCc--EEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec-CCe--EEEEeCCCC
Q psy14458         51 VSALCVDPSGRLMV-SGHEDSS--CVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY-DNK--LVLTDLQGT  122 (125)
Q Consensus        51 i~~~~~~~~~~~~~-~~~~~~~--i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~--i~~~~~~~~  122 (125)
                      -..-.|+|+++.++ +...+|.  |++.|+..++... +....+.-..=.|+|||+.++-.+. .|.  |.+.++.+.
T Consensus       240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence            34557999997664 4556665  6777777666333 4323333335679999998877664 444  555555544

>KOG0882|consensus

Probab=96.47  E-value=0.097  Score=35.47  Aligned_cols=58  Identities=17%  Similarity=0.114  Sum_probs=45.9

Q ss_pred             EEEeCCCcEEEEEcCCC--ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         64 VSGHEDSSCVLYDIRGS--RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        64 ~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ++.-.++.+.++|-...  +....-..|..+|.++.++|-+..+++.-..|.|.-|....
T Consensus       116 Vs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~  175 (558)
T KOG0882|consen  116 VSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG  175 (558)
T ss_pred             eecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence            34456788999997653  33444457999999999999999999999999999998763

>KOG3621|consensus

Probab=96.47  E-value=0.017  Score=40.64  Aligned_cols=77  Identities=17%  Similarity=0.225  Sum_probs=57.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEE-eCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQT-FKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      ..+.--+++..+++++.|+.-|.+++|+-..++.... ..+..+.......+++..+++.|+..|.|.++.++.+..|
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            3445556677899999999999999999776654332 2223344455678888889999999999999998876543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.42  E-value=0.07  Score=36.35  Aligned_cols=55  Identities=15%  Similarity=0.218  Sum_probs=37.0

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      |.+|+..+.+ .|.+||+.+++.+..+...  +|..+.|++++++++..+.+. +.+++
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~-i~il~  171 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS-IYILK  171 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S-EEEEE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe-EEEEE
Confidence            7766666544 8999999999999988733  388999999999999987664 55554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.37  E-value=0.027  Score=25.18  Aligned_cols=30  Identities=17%  Similarity=0.236  Sum_probs=24.9

Q ss_pred             CeEEEEECCCC---CEEEEEeCCCcEEEEEcCC
Q psy14458         50 PVSALCVDPSG---RLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus        50 ~i~~~~~~~~~---~~~~~~~~~~~i~~~d~~~   79 (125)
                      .+.++.|+|..   .+|+.+-..+.+.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            57889999754   5888888889999999985

It contains a characteristic DLL sequence motif.

>KOG1920|consensus

Probab=96.36  E-value=0.062  Score=40.35  Aligned_cols=71  Identities=17%  Similarity=0.224  Sum_probs=49.1

Q ss_pred             CeEEEEECCCCCEEEEEe---CCCcEEEEEcCCCce----eEEeCCCCCceeEEEEccCCCeEEE---eecCCeEEEEeC
Q psy14458         50 PVSALCVDPSGRLMVSGH---EDSSCVLYDIRGSRP----LQTFKPHTADVRSIRFSPSAYYLLT---GGYDNKLVLTDL  119 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~---~~~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~---~~~d~~i~~~~~  119 (125)
                      .-.+++|-|.|..+++--   .++.|.++.- +|..    ...+.....+|..++|+.++.+++.   ......|.+|-.
T Consensus       243 l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  243 LQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             cccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence            446889999998887743   4556888873 3322    2223334445899999999999988   445555999977


Q ss_pred             CC
Q psy14458        120 QG  121 (125)
Q Consensus       120 ~~  121 (125)
                      .+
T Consensus       322 ~N  323 (1265)
T KOG1920|consen  322 GN  323 (1265)
T ss_pred             cC
Confidence            65

>KOG1900|consensus

Probab=96.30  E-value=0.17  Score=38.54  Aligned_cols=116  Identities=15%  Similarity=0.241  Sum_probs=73.3

Q ss_pred             cCCCeEEEEECCCCcceeeecCCCCCeEEEEecC-------------------------------c----cc----cccc
Q psy14458          5 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH-------------------------------Y----TT----EAGT   45 (125)
Q Consensus         5 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-------------------------------~----~~----~~~~   45 (125)
                      .-|+.+.+|+..++.....+.+-...|..+..-.                               .    ..    ....
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            4588999999998766666655444444443210                               0    00    0011


Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCcEEEE--EcCCC---c-----------------eeEEeC-CCCCceeEEEEccCC
Q psy14458         46 RQGSPVSALCVDPSGRLMVSGHEDSSCVLY--DIRGS---R-----------------PLQTFK-PHTADVRSIRFSPSA  102 (125)
Q Consensus        46 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~--d~~~~---~-----------------~~~~~~-~~~~~v~~~~~~~~~  102 (125)
                      ..+..+.|+....+|+.+++| .||.|+-.  ....+   +                 .+..+. .+..+|..+...-..
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            345678888877777766666 56654422  21111   0                 122222 456789999998888


Q ss_pred             CeEEEeecCCeEEEEeCCC
Q psy14458        103 YYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus       103 ~~~~~~~~d~~i~~~~~~~  121 (125)
                      .++.+-+..+++.+||+..
T Consensus       255 ~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeeeccCceEEEEEccC
Confidence            8999999999999999976

>KOG2114|consensus

Probab=96.24  E-value=0.061  Score=39.02  Aligned_cols=67  Identities=15%  Similarity=0.123  Sum_probs=42.9

Q ss_pred             eEEEEECCCCCEEEEEeCCC-----cEEEEEcCCC------ceeE--EeCCC-----CCceeEEEEccCCCeEEEeecCC
Q psy14458         51 VSALCVDPSGRLMVSGHEDS-----SCVLYDIRGS------RPLQ--TFKPH-----TADVRSIRFSPSAYYLLTGGYDN  112 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~~~~-----~i~~~d~~~~------~~~~--~~~~~-----~~~v~~~~~~~~~~~~~~~~~d~  112 (125)
                      +..+......+++++-.+|+     .+++|++..-      +++.  .+..+     ..++.+++.+.+-+.+++|-.+|
T Consensus        68 v~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG  147 (933)
T KOG2114|consen   68 VQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNG  147 (933)
T ss_pred             hhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCc
Confidence            33333333446777766554     4899998642      2231  11122     34577888988989999999999


Q ss_pred             eEEEE
Q psy14458        113 KLVLT  117 (125)
Q Consensus       113 ~i~~~  117 (125)
                      .|..+
T Consensus       148 ~V~~~  152 (933)
T KOG2114|consen  148 LVICY  152 (933)
T ss_pred             EEEEE
Confidence            98877

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.19  E-value=0.16  Score=32.92  Aligned_cols=69  Identities=16%  Similarity=0.168  Sum_probs=46.1

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCC-CceeEEeC--CCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         50 PVSALCVDPSGRLMVSGHEDSSCVLYDIRG-SRPLQTFK--PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      .+.++..  .+++++.|+....+.++.... ...+..+.  .....+.++.+-++++.++.+..+|.+.++...
T Consensus       131 ~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  131 YITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            3444444  467999999999988875543 22232222  345568888888766789999999999998765

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.09  E-value=0.21  Score=34.53  Aligned_cols=63  Identities=16%  Similarity=0.159  Sum_probs=39.7

Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCc--eeEEEEcc--CCCeEEEee---------cCCeEEEEeCCCCC
Q psy14458         61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTAD--VRSIRFSP--SAYYLLTGG---------YDNKLVLTDLQGTM  123 (125)
Q Consensus        61 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~~~~~~---------~d~~i~~~~~~~~~  123 (125)
                      ..++.++.++.|+.+|..+++.+..+......  -..+.-+|  .+..++.++         .++.+..+|..++.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~  186 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGK  186 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCc
Confidence            67778889999999999999988877643221  00111122  223444443         35778888887664

The alignment model contains an 8-bladed beta-propeller.

>KOG1008|consensus

Probab=96.09  E-value=0.002  Score=44.82  Aligned_cols=72  Identities=22%  Similarity=0.310  Sum_probs=45.8

Q ss_pred             CCeEEEEECC-CCCEEEEEeCCCcEEEEE-cCCCc-eeEEeCCCCC----ceeEEEEccCC-CeEEEee-cCCeEEEEeC
Q psy14458         49 SPVSALCVDP-SGRLMVSGHEDSSCVLYD-IRGSR-PLQTFKPHTA----DVRSIRFSPSA-YYLLTGG-YDNKLVLTDL  119 (125)
Q Consensus        49 ~~i~~~~~~~-~~~~~~~~~~~~~i~~~d-~~~~~-~~~~~~~~~~----~v~~~~~~~~~-~~~~~~~-~d~~i~~~~~  119 (125)
                      +.+..+.++| ..+++++-. ||.|-+|| .++-+ ++..+...++    .+..++|.|.. ..+++.. ..++|+.+++
T Consensus       196 k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  196 KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             hhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence            4566777888 556666654 99999999 44432 2322222222    48899999943 2444444 5678999987


Q ss_pred             CC
Q psy14458        120 QG  121 (125)
Q Consensus       120 ~~  121 (125)
                      +.
T Consensus       275 ~~  276 (783)
T KOG1008|consen  275 CV  276 (783)
T ss_pred             cc
Confidence            63

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.03  E-value=0.12  Score=33.16  Aligned_cols=56  Identities=18%  Similarity=0.329  Sum_probs=44.3

Q ss_pred             EECCCCCEEEEEeC-----CCcEEEEEcCCC-ceeEEeCCCCCceeEEEEccCCCeEEEeec
Q psy14458         55 CVDPSGRLMVSGHE-----DSSCVLYDIRGS-RPLQTFKPHTADVRSIRFSPSAYYLLTGGY  110 (125)
Q Consensus        55 ~~~~~~~~~~~~~~-----~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  110 (125)
                      .|||+|.+|...-+     -|.|-+||.+.+ +.+.++..|.-.-+.+.+.+||+.++.+..
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            58999998876543     377999999864 567778888777788999999999987654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.00  E-value=0.18  Score=31.24  Aligned_cols=73  Identities=10%  Similarity=0.171  Sum_probs=52.2

Q ss_pred             CCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCc-------eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         49 SPVSALCVDPSGRLMV-SGHEDSSCVLYDIRGSR-------PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~-~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ...+.++|+|+++.++ +-+..+.|..+++....       .+..+....+..-.+++.++|++.++....+.|.+++.+
T Consensus       134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            4568999999998665 56677889999986321       122233222346679999999999988889999999887


Q ss_pred             C
Q psy14458        121 G  121 (125)
Q Consensus       121 ~  121 (125)
                      .
T Consensus       214 G  214 (246)
T PF08450_consen  214 G  214 (246)
T ss_dssp             S
T ss_pred             c
Confidence            4

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.89  E-value=0.45  Score=34.87  Aligned_cols=117  Identities=13%  Similarity=0.154  Sum_probs=64.7

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCC--------eEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTAD--------VRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCV   73 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~   73 (125)
                      ..++.++.|.-.|..+++.+..+......        .+.+.+........  .......  -...+..++.++.|+.+.
T Consensus       198 Yv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~--~~~~~~~--p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       198 YLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAA--GPAAPAA--PADCARRIILPTSDARLI  273 (764)
T ss_pred             EEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccc--ccccccc--ccccCCEEEEecCCCeEE
Confidence            45677888999999999988887643211        01111100000000  0000000  001345788888999999


Q ss_pred             EEEcCCCceeEEeCCCCCcee-------------EEEEcc--CCCeEEEeec----------CCeEEEEeCCCCC
Q psy14458         74 LYDIRGSRPLQTFKPHTADVR-------------SIRFSP--SAYYLLTGGY----------DNKLVLTDLQGTM  123 (125)
Q Consensus        74 ~~d~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~~~~~~~----------d~~i~~~~~~~~~  123 (125)
                      -.|..+++.+..|.. ++.|.             .+.-.|  -+..++.|+.          +|.|+-+|.+++.
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk  347 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA  347 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence            999999998877642 22110             112223  2334444532          5889999998875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.73  E-value=0.037  Score=40.17  Aligned_cols=55  Identities=18%  Similarity=0.320  Sum_probs=38.6

Q ss_pred             CeeecCCCeEEEEECCCCcceee-ecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQT-FKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDI   77 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~   77 (125)
                      ||.|+.+|.||+||- .++...+ +.+-.                    .+|..|+.+.+|++++..+. ..|-+++.
T Consensus       591 iavgs~~G~IRLyd~-~g~~AKT~lp~lG--------------------~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  591 IAVGSNKGDIRLYDR-LGKRAKTALPGLG--------------------DPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             EEEEeCCCcEEeecc-cchhhhhcCCCCC--------------------CCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            588999999999994 4433222 33333                    78899999999998877764 44555554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1920|consensus

Probab=95.71  E-value=0.19  Score=37.97  Aligned_cols=69  Identities=9%  Similarity=-0.010  Sum_probs=55.9

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      ..|.++.|..+.+.++.+...|.|.+.|..+..... ...-.+.|.+++|+||++.++..+.++++.+-.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMT  137 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence            478899999999999999999999999877654322 223457899999999999999999988887653

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.63  E-value=0.13  Score=32.38  Aligned_cols=62  Identities=21%  Similarity=0.335  Sum_probs=42.6

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         58 PSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        58 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ..++.++.|+++| +++++........... +...|..+...|+-+.++.-+ |+.++++++...
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l   66 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSL   66 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhh
Confidence            4578899998888 8999983322222222 233388999988776666664 499999998654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.62  E-value=0.39  Score=32.12  Aligned_cols=72  Identities=17%  Similarity=0.291  Sum_probs=54.3

Q ss_pred             CeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEe-ecCCeEEEEeCCCC
Q psy14458         50 PVSALCVDPSGRLMVSGHE---DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTG-GYDNKLVLTDLQGT  122 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~  122 (125)
                      ....++++++++.+..+..   ++.+.+.|..+.+.......-..+ ..+.++|+|..+... ..++.+.+.|.++.
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~  192 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN  192 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc
Confidence            4567899999977766655   688999999888887775433334 789999999855554 47899999987653

>KOG4499|consensus

Probab=95.44  E-value=0.35  Score=30.34  Aligned_cols=49  Identities=20%  Similarity=0.269  Sum_probs=42.0

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEcc
Q psy14458         52 SALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP  100 (125)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~  100 (125)
                      -.++..-+|++.++.-+.++|.-.|..+++.+.+++.-...+++.+|--
T Consensus       215 DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  215 DGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            3556677889999999999999999999999999987788899999954

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.40  E-value=0.19  Score=34.31  Aligned_cols=49  Identities=16%  Similarity=0.217  Sum_probs=30.3

Q ss_pred             CCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q psy14458          6 EDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDI   77 (125)
Q Consensus         6 ~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~   77 (125)
                      .++.|.+||..+++.+..+..                      ..|..+.|++++++++..+.+ .+.+++.
T Consensus       124 ~~~~i~~yDw~~~~~i~~i~v----------------------~~vk~V~Ws~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  124 SSDFICFYDWETGKLIRRIDV----------------------SAVKYVIWSDDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             ETTEEEEE-TTT--EEEEESS-----------------------E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred             CCCCEEEEEhhHcceeeEEec----------------------CCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence            344688888888777777662                      247889999999999888755 5666664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.38  E-value=0.42  Score=32.55  Aligned_cols=84  Identities=19%  Similarity=0.252  Sum_probs=51.6

Q ss_pred             cccccccCCCCCeEEEEECCCCCEEEEE---eCC-CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEee-cCCe
Q psy14458         39 YTTEAGTRQGSPVSALCVDPSGRLMVSG---HED-SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGG-YDNK  113 (125)
Q Consensus        39 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~  113 (125)
                      ............+..-+|+|++..++-.   ... ..+.++++.+++...... ..+.-..-+|+|||+.++-.. .|+.
T Consensus       183 ~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~  261 (425)
T COG0823         183 YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGS  261 (425)
T ss_pred             cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCC
Confidence            3333444445667777888887654332   222 458999998876544443 223334578999998776544 5655


Q ss_pred             --EEEEeCCCCC
Q psy14458        114 --LVLTDLQGTM  123 (125)
Q Consensus       114 --i~~~~~~~~~  123 (125)
                        |++.|+.++.
T Consensus       262 ~~iy~~dl~~~~  273 (425)
T COG0823         262 PDIYLMDLDGKN  273 (425)
T ss_pred             ccEEEEcCCCCc
Confidence              6666776654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.36  E-value=0.24  Score=28.05  Aligned_cols=106  Identities=13%  Similarity=0.186  Sum_probs=61.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECC-----CCCEEEEEeCCCcEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP-----SGRLMVSGHEDSSCVLY   75 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~i~~~   75 (125)
                      |+.+..-++|.|++.........-  ...+++.+.++           ..|++++--+     +...|+.|+ ...+..|
T Consensus        13 L~~aT~~gKV~IH~ph~~~~~~~~--~~~~i~~LNin-----------~~italaaG~l~~~~~~D~LliGt-~t~llaY   78 (136)
T PF14781_consen   13 LACATTGGKVFIHNPHERGQRTGR--QDSDISFLNIN-----------QEITALAAGRLKPDDGRDCLLIGT-QTSLLAY   78 (136)
T ss_pred             EEEEecCCEEEEECCCcccccccc--ccCceeEEECC-----------CceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence            345666788888887543322111  45566666666           6777776544     346677775 5678899


Q ss_pred             EcCCCceeEEeCCCCCceeEEEEcc---CCCeEEEeecCCeEEEEeCCC
Q psy14458         76 DIRGSRPLQTFKPHTADVRSIRFSP---SAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        76 d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      |+.....++..+ -...|+++.+-.   ...-++..+.+-.|.-+|.+.
T Consensus        79 DV~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G  126 (136)
T PF14781_consen   79 DVENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG  126 (136)
T ss_pred             EcccCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence            998877666444 345677765522   223344444445555555443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.20  E-value=0.43  Score=32.07  Aligned_cols=72  Identities=13%  Similarity=0.260  Sum_probs=45.5

Q ss_pred             CeEEEEECCCCCEEEEE-eCCC----cEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCC-----------e
Q psy14458         50 PVSALCVDPSGRLMVSG-HEDS----SCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN-----------K  113 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~-~~~~----~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~-----------~  113 (125)
                      .+....++|++++++.+ +..|    .++++|+.+++.+...- ....-..+.|.++++.++-...+.           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-cccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            44578899999987654 3333    49999999997654321 111122399999987765554322           3


Q ss_pred             EEEEeCCCC
Q psy14458        114 LVLTDLQGT  122 (125)
Q Consensus       114 i~~~~~~~~  122 (125)
                      ++.|.+.+.
T Consensus       204 v~~~~~gt~  212 (414)
T PF02897_consen  204 VYRHKLGTP  212 (414)
T ss_dssp             EEEEETTS-
T ss_pred             EEEEECCCC
Confidence            677776654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.19  E-value=0.1  Score=34.31  Aligned_cols=64  Identities=23%  Similarity=0.442  Sum_probs=42.9

Q ss_pred             CCCCCEEEEEe---------CCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         57 DPSGRLMVSGH---------EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        57 ~~~~~~~~~~~---------~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ||++++++...         ..+.+.++|+.+++... +......+....|+|+|+.++-.. ++.|.+.++.++
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~-l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~   73 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP-LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG   73 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE-SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE-CcCCccccccceeecCCCeeEEEe-cCceEEEECCCC
Confidence            46666665532         34668899998865443 322256788899999999988875 567888887554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2395|consensus

Probab=95.19  E-value=0.6  Score=32.63  Aligned_cols=55  Identities=20%  Similarity=0.300  Sum_probs=35.6

Q ss_pred             EEEeCCCcEEEEEcCCCce--eEEeCCC----CCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         64 VSGHEDSSCVLYDIRGSRP--LQTFKPH----TADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        64 ~~~~~~~~i~~~d~~~~~~--~~~~~~~----~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      +.|-.++.|.-||.+-...  +..-..|    +....|++-..+| +|+.||.+|.|++||.
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr  458 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR  458 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh
Confidence            4455677888899875322  2211212    2334566655555 8999999999999986

>KOG4460|consensus

Probab=95.04  E-value=0.78  Score=32.18  Aligned_cols=75  Identities=13%  Similarity=0.119  Sum_probs=50.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcC---------CCceeEEeC----------C-CCCceeEEEEccC---CCeE
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIR---------GSRPLQTFK----------P-HTADVRSIRFSPS---AYYL  105 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~---------~~~~~~~~~----------~-~~~~v~~~~~~~~---~~~~  105 (125)
                      ..|..+..++.|..++..+.+|.+-.+-.+         .++.....+          . ..=.+...+|+|+   ..++
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            467888999999998888888875443311         232211111          0 1113567899996   4789


Q ss_pred             EEeecCCeEEEEeCCCCC
Q psy14458        106 LTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus       106 ~~~~~d~~i~~~~~~~~~  123 (125)
                      ..-+.|.+|++||+....
T Consensus       184 ~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEEecCcEEEEEecCCcc
Confidence            999999999999987653

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.82  E-value=0.32  Score=34.04  Aligned_cols=66  Identities=17%  Similarity=0.163  Sum_probs=38.5

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCC----CceeEE--eCC--------------------CCCceeEEEEcc----CCCeEEE
Q psy14458         58 PSGRLMVSGHEDSSCVLYDIRG----SRPLQT--FKP--------------------HTADVRSIRFSP----SAYYLLT  107 (125)
Q Consensus        58 ~~~~~~~~~~~~~~i~~~d~~~----~~~~~~--~~~--------------------~~~~v~~~~~~~----~~~~~~~  107 (125)
                      ++...++.+..||.+.......    +.....  +..                    ....+..+..++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3556677777888877766553    111111  110                    112344556665    6789999


Q ss_pred             eecCCeEEEEeCCCCC
Q psy14458        108 GGYDNKLVLTDLQGTM  123 (125)
Q Consensus       108 ~~~d~~i~~~~~~~~~  123 (125)
                      .+.|+++++||+.++.
T Consensus       236 l~~D~~LRiW~l~t~~  251 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQ  251 (547)
T ss_dssp             EETTSEEEEEETTTTC
T ss_pred             EeCCCeEEEEECCCCe
Confidence            9999999999998874

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=94.79  E-value=0.56  Score=30.45  Aligned_cols=93  Identities=23%  Similarity=0.264  Sum_probs=52.8

Q ss_pred             CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEE---EECCC----CCEEEEEeC---------C-C
Q psy14458          8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSAL---CVDPS----GRLMVSGHE---------D-S   70 (125)
Q Consensus         8 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~---~~~~~----~~~~~~~~~---------~-~   70 (125)
                      ..|++.|..+.+.+..+.-...                   ..+.++   .+..+    .++++.|+.         . |
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~-------------------E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~G   62 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPN-------------------EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSG   62 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETT-------------------EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-E
T ss_pred             cEEEEEeCCCCeEEEEEECCCC-------------------ceEEEEEEEEEcCccccccCEEEEEecccccccccccCc
Confidence            3588888887776655442221                   223333   33322    456666652         2 8


Q ss_pred             cEEEEEcCCC----ceeEEe--CCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         71 SCVLYDIRGS----RPLQTF--KPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        71 ~i~~~d~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .|.++++...    ..+..+  ...+++|.+++-- ++. ++.+ .++.+.+|++...
T Consensus        63 ri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~  117 (321)
T PF03178_consen   63 RILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNS  117 (321)
T ss_dssp             EEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETT
T ss_pred             EEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCc
Confidence            8999999883    122211  2357889888755 554 3333 3478999988654

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.77  E-value=0.21  Score=32.79  Aligned_cols=40  Identities=15%  Similarity=0.350  Sum_probs=27.7

Q ss_pred             CCeEEEEECCCC-CEEEEEe-CCCcEEEEEcCCCceeEEeCC
Q psy14458         49 SPVSALCVDPSG-RLMVSGH-EDSSCVLYDIRGSRPLQTFKP   88 (125)
Q Consensus        49 ~~i~~~~~~~~~-~~~~~~~-~~~~i~~~d~~~~~~~~~~~~   88 (125)
                      .++.+|.++.+. .+|+..+ .++.+.+||..+++.+..+..
T Consensus       289 ~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  289 HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            356788888876 4665554 578999999999999888873

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.64  E-value=0.88  Score=30.86  Aligned_cols=50  Identities=16%  Similarity=0.217  Sum_probs=37.3

Q ss_pred             cEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         71 SCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        71 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .|++|+.. |+.+..+....+.+.++.|+.+ ..|+....||.++++|+.+.
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCc
Confidence            48888754 6666666544478999999875 56667779999999998643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.55  E-value=0.68  Score=29.18  Aligned_cols=98  Identities=20%  Similarity=0.283  Sum_probs=56.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |+.|.++| +.++++........+. +.                    ..|..+...|+.+.++.-+ |+.++++++..-
T Consensus        10 L~vGt~~G-l~~~~~~~~~~~~~i~-~~--------------------~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l   66 (275)
T PF00780_consen   10 LLVGTEDG-LYVYDLSDPSKPTRIL-KL--------------------SSITQLSVLPELNLLLVLS-DGQLYVYDLDSL   66 (275)
T ss_pred             EEEEECCC-EEEEEecCCccceeEe-ec--------------------ceEEEEEEecccCEEEEEc-CCccEEEEchhh
Confidence            46677888 8888872222222221 11                    3478888888877776664 499999998763


Q ss_pred             ceeEE--------------eCCCCCceeEEE--EccCCCeEEEeecCCeEEEEeCCC
Q psy14458         81 RPLQT--------------FKPHTADVRSIR--FSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        81 ~~~~~--------------~~~~~~~v~~~~--~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      .....              .......+...+  -.+++...+.....+.|.+|....
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~  123 (275)
T PF00780_consen   67 EPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWND  123 (275)
T ss_pred             ccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEEC
Confidence            32221              011223454444  122444455555556888887765

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.51  E-value=1.2  Score=31.95  Aligned_cols=67  Identities=12%  Similarity=0.214  Sum_probs=45.7

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC-CCCCceeEEEEcc--CCCeEEEeecCCeEEEEeC
Q psy14458         53 ALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIRFSP--SAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~~~~~~~d~~i~~~~~  119 (125)
                      -+.-+..++..+.-+....+.|||.+.+.....-. ...+.|..+.|..  +++.+++.+....|.++.-
T Consensus        34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            33334444444444445569999998876443332 3467899998854  8999999999999888853

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG3617|consensus

Probab=94.47  E-value=0.19  Score=37.08  Aligned_cols=33  Identities=15%  Similarity=0.281  Sum_probs=30.0

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q psy14458         46 RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR   78 (125)
Q Consensus        46 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~   78 (125)
                      .|+.+|..+.||++|..++++..-|.+.+|...
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            456889999999999999999999999999875

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.16  E-value=1.2  Score=30.30  Aligned_cols=54  Identities=13%  Similarity=0.266  Sum_probs=40.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCC-CCceeEEEEccCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPH-TADVRSIRFSPSA  102 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~  102 (125)
                      .++..|++||++++++.-..+|.+.+.+..-.+....+... ......+.|.-+.
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            46899999999999999999999999887666666666533 3445567775543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.16  E-value=0.26  Score=34.46  Aligned_cols=38  Identities=16%  Similarity=0.284  Sum_probs=28.6

Q ss_pred             CCeEEEEECC----CCCEEEEEeCCCcEEEEEcCCCceeEEe
Q psy14458         49 SPVSALCVDP----SGRLMVSGHEDSSCVLYDIRGSRPLQTF   86 (125)
Q Consensus        49 ~~i~~~~~~~----~~~~~~~~~~~~~i~~~d~~~~~~~~~~   86 (125)
                      .....++++.    +..++++.+.|+.+|+||+.+++++...
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            4456666766    6789999999999999999999885554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.11  E-value=1.4  Score=31.00  Aligned_cols=64  Identities=13%  Similarity=0.035  Sum_probs=39.8

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCc-eeEEEEcc---CCCeEEEee-----cCCeEEEEeCCCCC
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTAD-VRSIRFSP---SAYYLLTGG-----YDNKLVLTDLQGTM  123 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~---~~~~~~~~~-----~d~~i~~~~~~~~~  123 (125)
                      +..++.++.++.+..+|..+++.+......... -..+.-+|   ++..++..+     .++.|..+|.+++.
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~  192 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGK  192 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCc
Confidence            346777888999999999999988776521110 01111222   454444322     26889999988774

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=94.06  E-value=1.1  Score=29.57  Aligned_cols=73  Identities=15%  Similarity=0.204  Sum_probs=51.1

Q ss_pred             CCeEEEEECCCCCEEEEEeC---CCcEEEEEcCC--CceeEE--eCCCCCceeEEEEccCCCeEEEeec-CCeEEEEeCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHE---DSSCVLYDIRG--SRPLQT--FKPHTADVRSIRFSPSAYYLLTGGY-DNKLVLTDLQ  120 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~---~~~i~~~d~~~--~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~-d~~i~~~~~~  120 (125)
                      ...+-++++|+++.|.++..   +|.|-.|.+..  ++....  ......+-..+++++++++++++.. -+.|.++-++
T Consensus        40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~  119 (346)
T COG2706          40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ  119 (346)
T ss_pred             CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcc
Confidence            56788999999988877754   46676666653  443221  2222334478999999999999885 6788888776


Q ss_pred             C
Q psy14458        121 G  121 (125)
Q Consensus       121 ~  121 (125)
                      .
T Consensus       120 ~  120 (346)
T COG2706         120 A  120 (346)
T ss_pred             c
Confidence            4

>KOG3630|consensus

Probab=94.05  E-value=0.22  Score=37.68  Aligned_cols=59  Identities=15%  Similarity=0.220  Sum_probs=42.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC---C-CCCceeEEEEccCCCeEEEe
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK---P-HTADVRSIRFSPSAYYLLTG  108 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~~~  108 (125)
                      ...++++|+|.|..++.|...|++.=|..... ....+.   . ....|.+++|-....+++.-
T Consensus       199 ~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  199 NSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             cceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            56899999999999999999999877754332 111121   1 24678999998877777663

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.00  E-value=1.5  Score=30.88  Aligned_cols=31  Identities=23%  Similarity=0.360  Sum_probs=26.0

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPH   89 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~   89 (125)
                      .+.+++.++.+|.++.+|.++++.+..++..
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            4456777888999999999999999988743

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.93  E-value=1.5  Score=31.33  Aligned_cols=63  Identities=6%  Similarity=-0.049  Sum_probs=39.0

Q ss_pred             CeEEEEECCCCCEEEEEeCC------------CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEE
Q psy14458         50 PVSALCVDPSGRLMVSGHED------------SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVL  116 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~------------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~  116 (125)
                      ..+.-.|+|++..+.+....            +.+.+.++..++...   ...+.|..+.|+|||..++... ++.+.+
T Consensus       398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            46677899987766665432            223333333332222   2356799999999999887765 456666

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=93.79  E-value=1.4  Score=29.85  Aligned_cols=72  Identities=22%  Similarity=0.369  Sum_probs=45.8

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-------------------------------------------ceeEEe
Q psy14458         50 PVSALCVDPSGRLMVSGHEDSSCVLYDIRGS-------------------------------------------RPLQTF   86 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-------------------------------------------~~~~~~   86 (125)
                      .|+.+.+.++-..++.|...|.|-+|.....                                           .+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            4667777777666777777777766654211                                           011122


Q ss_pred             CCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         87 KPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        87 ~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ....++|++++.+ |=-+++.|..+|.+.+.|+|+.
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGP  117 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGP  117 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTT
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCC
Confidence            2346789999886 6569999999999999999864

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.71  E-value=1.4  Score=30.94  Aligned_cols=60  Identities=18%  Similarity=0.276  Sum_probs=44.9

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      .-+++.++..|-|++||--.-..-..+.+....|..+..+.+|+++++.|.. .+.+-|++
T Consensus       573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence            4589999999999999954333333456677889999999999999887764 45555554

>KOG2444|consensus

Probab=93.58  E-value=0.2  Score=31.00  Aligned_cols=59  Identities=15%  Similarity=0.175  Sum_probs=37.8

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEE--eCCCcEEEEEcCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG--HEDSSCVLYDIRG   79 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~i~~~d~~~   79 (125)
                      .+++.|+.|+.|++..++.+.....|..                   ........+..+.++.++  +.+..++.|++..
T Consensus       118 c~~~~dg~ir~~n~~p~k~~g~~g~h~~-------------------~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  118 CVGAQDGRIRACNIKPNKVLGYVGQHNF-------------------ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             EEeccCCceeeeccccCceeeeeccccC-------------------CCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            4678888888888887777666554541                   233344444455666666  6777777777643

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=93.51  E-value=1.6  Score=29.60  Aligned_cols=71  Identities=27%  Similarity=0.346  Sum_probs=49.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC--C------CCCceeEEEEcc-----CC---CeEEEeecC
Q psy14458         48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK--P------HTADVRSIRFSP-----SA---YYLLTGGYD  111 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~---~~~~~~~~d  111 (125)
                      ..+|++++.| +=-+++.|.++|.+-|.|+|....++.-.  .      ....+.++.|..     |+   -.+++|...
T Consensus        86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~  164 (395)
T PF08596_consen   86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS  164 (395)
T ss_dssp             S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred             CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence            5889999997 45689999999999999998776555421  1      234577787764     33   467788888


Q ss_pred             CeEEEEeC
Q psy14458        112 NKLVLTDL  119 (125)
Q Consensus       112 ~~i~~~~~  119 (125)
                      |.+.+|.+
T Consensus       165 G~v~~fkI  172 (395)
T PF08596_consen  165 GNVLTFKI  172 (395)
T ss_dssp             SEEEEEEE
T ss_pred             CCEEEEEE
Confidence            99988865

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.44  E-value=0.53  Score=31.01  Aligned_cols=51  Identities=18%  Similarity=0.180  Sum_probs=38.5

Q ss_pred             EEEEEcCCCceeEEeCCCCCceeEEEEccCCC-eEEEe-ecCCeEEEEeCCCCC
Q psy14458         72 CVLYDIRGSRPLQTFKPHTADVRSIRFSPSAY-YLLTG-GYDNKLVLTDLQGTM  123 (125)
Q Consensus        72 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~~d~~i~~~~~~~~~  123 (125)
                      |.++|+.+++.+..+. -..++.++..+.+.+ +|+.. ..++.+.++|..++.
T Consensus       271 VWv~D~~t~krv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  271 VWVYDLKTHKRVARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             EEEEETTTTEEEEEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             EEEEECCCCeEEEEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            7778888999888887 345678899998665 55554 468999999998874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.24  E-value=0.91  Score=28.02  Aligned_cols=75  Identities=5%  Similarity=0.052  Sum_probs=44.5

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      +.-..+|.+++||+.+++.+..-. .-.++.....     .........|..+.+..+|.-+++-+ +|..+.|+..-+.
T Consensus        26 l~iT~~G~l~vWnl~~~k~~~~~~-Si~pll~~~~-----~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~   98 (219)
T PF07569_consen   26 LAITSSGLLYVWNLKKGKAVLPPV-SIAPLLNSSP-----VSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGC   98 (219)
T ss_pred             EEEeCCCeEEEEECCCCeeccCCc-cHHHHhcccc-----cccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccce
Confidence            456789999999999876632210 1111111000     00003347788999998887776654 5778999876544


Q ss_pred             ee
Q psy14458         82 PL   83 (125)
Q Consensus        82 ~~   83 (125)
                      .+
T Consensus        99 W~  100 (219)
T PF07569_consen   99 WI  100 (219)
T ss_pred             eE
Confidence            33

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=93.13  E-value=1.5  Score=28.42  Aligned_cols=72  Identities=14%  Similarity=0.174  Sum_probs=53.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCC-----ceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTA-----DVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      .-++++...++|.+|++.-.-..|.+.|.++++.+..+.+..+     .-...++-.+-+++-.+..++.|.++|-.
T Consensus       144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~  220 (299)
T PF14269_consen  144 FHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA  220 (299)
T ss_pred             cEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence            3578889999999999999999999999999988887764411     11124444455666666778889998863

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.02  E-value=1.9  Score=29.07  Aligned_cols=70  Identities=14%  Similarity=0.158  Sum_probs=41.1

Q ss_pred             EEEECCCCCEEEEEeCC-----------CcEEEEEcCCCce--eEEeCCCCCc--eeEEEEccCCCeEEEeec---C-Ce
Q psy14458         53 ALCVDPSGRLMVSGHED-----------SSCVLYDIRGSRP--LQTFKPHTAD--VRSIRFSPSAYYLLTGGY---D-NK  113 (125)
Q Consensus        53 ~~~~~~~~~~~~~~~~~-----------~~i~~~d~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~~~~~~~---d-~~  113 (125)
                      .+.|.+++..++-...+           ..|+.|.+-+...  ...+......  ...+..++|+++++..+.   + ..
T Consensus       174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~  253 (414)
T PF02897_consen  174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE  253 (414)
T ss_dssp             EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred             eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence            38999997765444322           2377787766532  2445433332  457888999998765432   2 34


Q ss_pred             EEEEeCCCC
Q psy14458        114 LVLTDLQGT  122 (125)
Q Consensus       114 i~~~~~~~~  122 (125)
                      +.+.++...
T Consensus       254 v~~~d~~~~  262 (414)
T PF02897_consen  254 VYLLDLDDG  262 (414)
T ss_dssp             EEEEECCCT
T ss_pred             EEEEecccc
Confidence            777777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.42  E-value=2.5  Score=29.06  Aligned_cols=35  Identities=14%  Similarity=0.205  Sum_probs=21.7

Q ss_pred             CceeEEEEccCCCeEEE-eecCCeEEEEeCCCCCCC
Q psy14458         91 ADVRSIRFSPSAYYLLT-GGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        91 ~~v~~~~~~~~~~~~~~-~~~d~~i~~~~~~~~~~~  125 (125)
                      .-++.|..|.|.++|.. +-.+|.++.||+....+|
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence            34678899998887754 558999999999887765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3630|consensus

Probab=92.27  E-value=0.32  Score=36.90  Aligned_cols=70  Identities=14%  Similarity=0.051  Sum_probs=50.0

Q ss_pred             CCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCc-eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         49 SPVSALCVDPSG-RLMVSGHEDSSCVLYDIRGSR-PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        49 ~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      ....++.|.|.- ...+....|+.|++..+.... .+..+. .....++++|+|.|+.++.|-..|++.-|..
T Consensus       156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec
Confidence            345677888864 234555678888888765432 233333 5567889999999999999999999887754

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.10  E-value=1.8  Score=26.69  Aligned_cols=47  Identities=21%  Similarity=0.307  Sum_probs=35.6

Q ss_pred             CEEEEEeCCCcEEEEEcCC--CceeEEeCCCCCceeEEEEccCCCeEEEe
Q psy14458         61 RLMVSGHEDSSCVLYDIRG--SRPLQTFKPHTADVRSIRFSPSAYYLLTG  108 (125)
Q Consensus        61 ~~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  108 (125)
                      ..++.+...+.|.+|++..  .+....|.. -+.|..+.++..|+++++-
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTl   77 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTL   77 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEE
Confidence            4444446677799999983  456667764 4789999999999999985

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.09  E-value=2.3  Score=27.78  Aligned_cols=69  Identities=12%  Similarity=0.227  Sum_probs=40.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      ..+..+.-++++.+++.+.......-||.-...-...-+.....+..+.|.|++.+.+.+ ..+.|+.-+
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            567888888999988888665555667643222222233356789999999998776654 777777765

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=92.00  E-value=1.8  Score=29.23  Aligned_cols=69  Identities=19%  Similarity=0.131  Sum_probs=35.3

Q ss_pred             EECCCCCEEEEE-eCCCc--EEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         55 CVDPSGRLMVSG-HEDSS--CVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        55 ~~~~~~~~~~~~-~~~~~--i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +|.++|+.|+.+ ..+|.  +++.|+.+++..+.-.+.........++|+.+.++-...+..+.-.|+++..
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e  113 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE  113 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence            567788655544 44544  7777888777555333211222346677877776655556678888887753

>KOG1916|consensus

Probab=91.96  E-value=0.19  Score=37.23  Aligned_cols=35  Identities=31%  Similarity=0.523  Sum_probs=28.5

Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCC-----CceeEEeCCCC
Q psy14458         56 VDPSGRLMVSGHEDSSCVLYDIRG-----SRPLQTFKPHT   90 (125)
Q Consensus        56 ~~~~~~~~~~~~~~~~i~~~d~~~-----~~~~~~~~~~~   90 (125)
                      ++|+|..++.++.||.++.|.+.-     ..++..++.|.
T Consensus       243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence            899999999999999999998752     35666666666

>PF01011 PQQ: PQQ enzyme repeat family

Probab=91.91  E-value=0.53  Score=20.16  Aligned_cols=26  Identities=19%  Similarity=0.248  Sum_probs=22.1

Q ss_pred             EEEEEeCCCcEEEEEcCCCceeEEeC
Q psy14458         62 LMVSGHEDSSCVLYDIRGSRPLQTFK   87 (125)
Q Consensus        62 ~~~~~~~~~~i~~~d~~~~~~~~~~~   87 (125)
                      .++.++.+|.++..|.++++.+..+.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~   27 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQ   27 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeee
Confidence            35566899999999999999988876

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>smart00564 PQQ beta-propeller repeat

Probab=91.78  E-value=0.47  Score=19.29  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=20.5

Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeEEe
Q psy14458         61 RLMVSGHEDSSCVLYDIRGSRPLQTF   86 (125)
Q Consensus        61 ~~~~~~~~~~~i~~~d~~~~~~~~~~   86 (125)
                      ..++.++.++.+..+|..+++....+
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            35777888999999999888876543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.64  E-value=4.1  Score=29.88  Aligned_cols=116  Identities=9%  Similarity=0.210  Sum_probs=67.3

Q ss_pred             CeeecCCCeEEEEECCCCc-ceeeecCCCCC-eEEEEecCcccccccCCCCCeEEEEEC--CCCCEEEEEeCCCcEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSR-PLQTFKPHTAD-VRSIHLDHYTTEAGTRQGSPVSALCVD--PSGRLMVSGHEDSSCVLYD   76 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~-~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~i~~~d   76 (125)
                      |+.+..||.|.+|....-- .+......... -......+.   .....+...++++++  ...+++|.+++...|.||=
T Consensus       117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~---f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa  193 (717)
T PF08728_consen  117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF---FHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA  193 (717)
T ss_pred             EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC---eEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence            5678899999999874321 11111000000 000111111   112233678899998  7788899998888888876


Q ss_pred             cCCC-ceeEEe--CCCCCceeEEEEccCC---C---eEEEeecCCeEEEEeC
Q psy14458         77 IRGS-RPLQTF--KPHTADVRSIRFSPSA---Y---YLLTGGYDNKLVLTDL  119 (125)
Q Consensus        77 ~~~~-~~~~~~--~~~~~~v~~~~~~~~~---~---~~~~~~~d~~i~~~~~  119 (125)
                      .... +.....  ..+..-|-+|+|-++.   .   .+++++-.|.+.+|++
T Consensus       194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            5432 111111  1244567889887732   2   6777888999888876

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.64  E-value=1.8  Score=25.62  Aligned_cols=30  Identities=30%  Similarity=0.308  Sum_probs=24.5

Q ss_pred             ceeEEEEccC------CCeEEEeecCCeEEEEeCCC
Q psy14458         92 DVRSIRFSPS------AYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        92 ~v~~~~~~~~------~~~~~~~~~d~~i~~~~~~~  121 (125)
                      .+..++|+|.      +.+|++.+.++.+.+|....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            6788999993      35788899999999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=91.45  E-value=2.4  Score=26.80  Aligned_cols=71  Identities=17%  Similarity=0.290  Sum_probs=47.5

Q ss_pred             CCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeEEeCCC-CCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         49 SPVSALCVDPSG-RLMVSGHEDSSCVLYDIRGSRPLQTFKPH-TADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        49 ~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ..+..++|+|+. .+++..+..+.|..++. .++.+..+... .+-.-.|.+..++.++++.-.++.+.++++.
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            458999999975 56677777888888885 57777766532 2345678887777777765558888888873

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=91.40  E-value=2.8  Score=27.43  Aligned_cols=72  Identities=11%  Similarity=0.217  Sum_probs=45.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCC-CcEEEEEcCC--C----ce-eEEeCCCCCceeEEEEccCCCeEEEeecC-CeEEEEeC
Q psy14458         49 SPVSALCVDPSGRLMVSGHED-SSCVLYDIRG--S----RP-LQTFKPHTADVRSIRFSPSAYYLLTGGYD-NKLVLTDL  119 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~-~~i~~~d~~~--~----~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~~i~~~~~  119 (125)
                      ..-+.++|||+++.+..+... +.|+-+++..  +    +. ...+....+..=.++...+|.+.+++-.+ +.|..|+.
T Consensus       163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p  242 (307)
T COG3386         163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP  242 (307)
T ss_pred             EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence            456799999999877776554 7788887652  1    11 22222334444557777788777544333 37888887


Q ss_pred             C
Q psy14458        120 Q  120 (125)
Q Consensus       120 ~  120 (125)
                      +
T Consensus       243 d  243 (307)
T COG3386         243 D  243 (307)
T ss_pred             C
Confidence            6

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.18  E-value=2.7  Score=30.00  Aligned_cols=66  Identities=11%  Similarity=0.064  Sum_probs=39.8

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCC--ceeEEeCCCCCceeEEEEccCCCeEEEee-cCCeEEEEeC
Q psy14458         53 ALCVDPSGRLMVSGHEDSSCVLYDIRGS--RPLQTFKPHTADVRSIRFSPSAYYLLTGG-YDNKLVLTDL  119 (125)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~i~~~~~  119 (125)
                      .+.|+|....++.-.....--+++++..  +....++ ..+.|+|.+|.+||+.++.+- ..=.-++||-
T Consensus       117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             cccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            4568887776655544433334444432  2223343 567899999999997766543 3444678874

>PRK10115 protease 2; Provisional

Probab=91.07  E-value=3.1  Score=30.37  Aligned_cols=72  Identities=4%  Similarity=0.087  Sum_probs=45.5

Q ss_pred             CCeEEEEECCCCCEEEEEe-----CCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecC------CeEEEE
Q psy14458         49 SPVSALCVDPSGRLMVSGH-----EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD------NKLVLT  117 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d------~~i~~~  117 (125)
                      -.+..+.++|++++++.+.     +...|++.|+.+++.+...-....  ..+.|.+|++.|+-...+      ..++.+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            3467788999998876643     334488888887753322211111  458999988766554432      357777


Q ss_pred             eCCCC
Q psy14458        118 DLQGT  122 (125)
Q Consensus       118 ~~~~~  122 (125)
                      ++.++
T Consensus       205 ~lgt~  209 (686)
T PRK10115        205 TIGTP  209 (686)
T ss_pred             ECCCC
Confidence            77765

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.01  E-value=4.9  Score=29.60  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=29.2

Q ss_pred             CCCCCeEEEEECCC---CCEEEEEeCCCcEEEEEcCC
Q psy14458         46 RQGSPVSALCVDPS---GRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus        46 ~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~d~~~   79 (125)
                      .....|..+.|+|.   +..++.-..|+.+++||+..
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            44578999999996   58899999999999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2377|consensus

Probab=90.58  E-value=4.4  Score=28.27  Aligned_cols=70  Identities=11%  Similarity=0.161  Sum_probs=45.1

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcCCC--ceeEEeC-CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGS--RPLQTFK-PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      .+.+-|+. .+..+.+...|.+.-|-++..  ...-++. ..++++.++.|++|.+.++.-..|.+|.+++...
T Consensus        25 sngvFfDD-aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~   97 (657)
T KOG2377|consen   25 SNGVFFDD-ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIP   97 (657)
T ss_pred             ccceeecc-CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCC
Confidence            34444443 333333344555555554432  2222332 4677999999999999999999999999998743

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.30  E-value=3.6  Score=26.81  Aligned_cols=73  Identities=15%  Similarity=0.255  Sum_probs=53.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCC-CCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPH-TADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ..+.++.|+|+.+.+++..+....-++-...|+.+..+... -..--.+.|..++++.++-=.++.+.++.+..
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            45899999999999888888888777777788888877621 11223577777777777766677777776543

>PRK13616 lipoprotein LpqB; Provisional

Probab=90.08  E-value=5.5  Score=28.64  Aligned_cols=69  Identities=13%  Similarity=0.094  Sum_probs=41.4

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEE---EEcCCCc-ee---EEeC-CCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         48 GSPVSALCVDPSGRLMVSGHEDSSCVL---YDIRGSR-PL---QTFK-PHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~~~~i~~---~d~~~~~-~~---~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      ...|..+.|||+|..++... ++.|++   -....++ .+   ..+. .....+..+.|.+++.++ .+..++...+|.
T Consensus       447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEE
Confidence            45799999999999887765 467776   3333343 11   1122 223335789999998865 444433333443

>PHA02713 hypothetical protein; Provisional

Probab=89.88  E-value=3.4  Score=29.34  Aligned_cols=63  Identities=8%  Similarity=0.058  Sum_probs=37.0

Q ss_pred             CCCEEEEEeCC------CcEEEEEcCC-Cce--eEEeCCCCCceeEEEEccCCCeEEEeecCC--eEEEEeCCCCC
Q psy14458         59 SGRLMVSGHED------SSCVLYDIRG-SRP--LQTFKPHTADVRSIRFSPSAYYLLTGGYDN--KLVLTDLQGTM  123 (125)
Q Consensus        59 ~~~~~~~~~~~------~~i~~~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~--~i~~~~~~~~~  123 (125)
                      ++...+.|+.+      ..+..||..+ .+.  +..+.........+.+  ++++.+.|+.++  .+..||..+..
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            35555555533      2467899887 443  2333322222333333  888999999888  67777776653

>KOG2247|consensus

Probab=89.86  E-value=0.16  Score=35.02  Aligned_cols=53  Identities=21%  Similarity=0.297  Sum_probs=42.3

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEE
Q psy14458         54 LCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLL  106 (125)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  106 (125)
                      .+|++....++.+...|.+.+++-.+.+.+-..-.|...+.++++.+.+..+.
T Consensus       123 l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  123 LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence            67888888899999999999999877666555555888899999988764433

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.73  E-value=0.96  Score=19.40  Aligned_cols=31  Identities=13%  Similarity=0.252  Sum_probs=21.8

Q ss_pred             CCCCEEEEEe-CCCcEEEEEcCCCceeEEeCC
Q psy14458         58 PSGRLMVSGH-EDSSCVLYDIRGSRPLQTFKP   88 (125)
Q Consensus        58 ~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~   88 (125)
                      |+++.++.++ .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            4566555544 578899999988877776664

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=89.39  E-value=7.2  Score=29.62  Aligned_cols=73  Identities=15%  Similarity=0.236  Sum_probs=48.0

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-----------------Cc-------eeEEeCCCCCceeEEEEccC
Q psy14458         46 RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG-----------------SR-------PLQTFKPHTADVRSIRFSPS  101 (125)
Q Consensus        46 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~-----------------~~-------~~~~~~~~~~~v~~~~~~~~  101 (125)
                      .++..|.|+.-+.+|..+++|-.|  +.+|.+.-                 +.       ....+..+...+..++....
T Consensus       179 vqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqs  256 (1263)
T COG5308         179 VQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQS  256 (1263)
T ss_pred             ccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeeccc
Confidence            455778899888889988888777  66666531                 00       01112234566777777776


Q ss_pred             CCeEEEeecCCeEEEEeCC
Q psy14458        102 AYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus       102 ~~~~~~~~~d~~i~~~~~~  120 (125)
                      ...+.+-+....++.+.+.
T Consensus       257 Rg~ly~Lr~kS~Vray~it  275 (1263)
T COG5308         257 RGLLYVLRKKSAVRAYSIT  275 (1263)
T ss_pred             ccceeeecccceeeeEeee
Confidence            6777777777778777654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=88.83  E-value=4.5  Score=25.90  Aligned_cols=93  Identities=12%  Similarity=0.171  Sum_probs=55.6

Q ss_pred             CCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q psy14458          7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTF   86 (125)
Q Consensus         7 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~   86 (125)
                      ++...+||..+.+.+..+.-.                     ..=..++  .++..++..+....++++|..+-+....+
T Consensus       109 ~~~~f~yd~~tl~~~~~~~y~---------------------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i  165 (264)
T PF05096_consen  109 EGTGFVYDPNTLKKIGTFPYP---------------------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI  165 (264)
T ss_dssp             SSEEEEEETTTTEEEEEEE-S---------------------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred             CCeEEEEccccceEEEEEecC---------------------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEE
Confidence            455667777666665555421                     1223444  35677888877888999998876655555


Q ss_pred             CC--CCC---ceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         87 KP--HTA---DVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        87 ~~--~~~---~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .-  ...   .++.+.|. +|.+.+..-....|...|..++.
T Consensus       166 ~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~  206 (264)
T PF05096_consen  166 QVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK  206 (264)
T ss_dssp             E-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred             EEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence            42  222   34556664 78888888888888888877763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=88.82  E-value=4.5  Score=25.89  Aligned_cols=53  Identities=13%  Similarity=0.187  Sum_probs=36.3

Q ss_pred             eCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        67 ~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      =.++...+||..+-+.+..+. ..+.=+.++.  |++.++...+...++++|..+.
T Consensus       107 Wk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f  159 (264)
T PF05096_consen  107 WKEGTGFVYDPNTLKKIGTFP-YPGEGWGLTS--DGKRLIMSDGSSRLYFLDPETF  159 (264)
T ss_dssp             SSSSEEEEEETTTTEEEEEEE--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-
T ss_pred             ecCCeEEEEccccceEEEEEe-cCCcceEEEc--CCCEEEEECCccceEEECCccc
Confidence            377889999999888888876 3344455653  7778888777888999997653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=88.41  E-value=7.8  Score=28.15  Aligned_cols=92  Identities=17%  Similarity=0.265  Sum_probs=51.4

Q ss_pred             CCCeEEEEECCCCcceeeec-CCCCCeEEEEecCcccccccCCCCCeEEEEEC--CCCCEEEEEeCCCcEEEEEcC----
Q psy14458          6 EDSSCVLYDIRGSRPLQTFK-PHTADVRSIHLDHYTTEAGTRQGSPVSALCVD--PSGRLMVSGHEDSSCVLYDIR----   78 (125)
Q Consensus         6 ~d~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~i~~~d~~----   78 (125)
                      ...++.|||.+.+.....-. ....                    .|.++.|.  |++..+++.+-.+.|.++.-.    
T Consensus        49 ~~~~LtIWD~~~~~lE~~~~f~~~~--------------------~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   49 SRSELTIWDTRSGVLEYEESFSEDD--------------------PIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CCCEEEEEEcCCcEEEEeeeecCCC--------------------ceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            34577899987766433211 2343                    44555544  355666666666777666431    


Q ss_pred             -CC----ceeEEe--CCCC-CceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         79 -GS----RPLQTF--KPHT-ADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        79 -~~----~~~~~~--~~~~-~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                       ..    ..+..+  ..+. .+|....|.++|.+++.++  ..+.++|-
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence             11    122222  2333 5688899999986665543  45666653

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=88.16  E-value=5.6  Score=26.18  Aligned_cols=71  Identities=15%  Similarity=0.092  Sum_probs=49.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcC------CC-ceeEEeCC-----CCCceeEEEEccCCCe------------
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIR------GS-RPLQTFKP-----HTADVRSIRFSPSAYY------------  104 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~~------------  104 (125)
                      ..-+.|+++|.+.+.++....+...+||..      .. ..+..+..     .....+.+.|+....+            
T Consensus        23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            345789999999999999889999999986      12 23333331     1234566666643333            


Q ss_pred             EEEeecCCeEEEEeC
Q psy14458        105 LLTGGYDNKLVLTDL  119 (125)
Q Consensus       105 ~~~~~~d~~i~~~~~  119 (125)
                      ++.+++||+|.-|..
T Consensus       103 Fif~tEdGTisaW~p  117 (336)
T TIGR03118       103 FLFVTEDGTLSGWAP  117 (336)
T ss_pred             EEEEeCCceEEeecC
Confidence            577889999999985

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.86  E-value=1.4  Score=18.76  Aligned_cols=29  Identities=17%  Similarity=0.249  Sum_probs=18.5

Q ss_pred             CCCceeEEEEccCCCeEEEeec-C--CeEEEE
Q psy14458         89 HTADVRSIRFSPSAYYLLTGGY-D--NKLVLT  117 (125)
Q Consensus        89 ~~~~v~~~~~~~~~~~~~~~~~-d--~~i~~~  117 (125)
                      ....-....|+|||+.|+-.+. +  |...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3445567899999988876654 4  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.77  E-value=7.5  Score=27.22  Aligned_cols=71  Identities=18%  Similarity=0.224  Sum_probs=46.7

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +..+.-..+.+-+++-+.+|.+.++.....+.+. ++..-.....+.++|++.++++-. .|.++++.++++.
T Consensus       319 ~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~  389 (733)
T COG4590         319 VQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRN  389 (733)
T ss_pred             ceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchheeec-CCceEEEEecCCC
Confidence            3333333345667777888888888655444443 332334567899999998888764 4668888887654

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=87.34  E-value=1.5  Score=18.81  Aligned_cols=21  Identities=19%  Similarity=0.123  Sum_probs=16.2

Q ss_pred             CCCeEEEeecCCeEEEEeCCC
Q psy14458        101 SAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus       101 ~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      .+..+..++.|+.++.+|.++
T Consensus        20 ~~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   20 AGGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             CTSEEEEE-TTSEEEEEETT-
T ss_pred             ECCEEEEEcCCCEEEEEeCCC
Confidence            556888889999999999764

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=87.15  E-value=1.4  Score=23.15  Aligned_cols=18  Identities=6%  Similarity=0.196  Sum_probs=13.0

Q ss_pred             CCeEEEEECCCCCEEEEE
Q psy14458         49 SPVSALCVDPSGRLMVSG   66 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~   66 (125)
                      ...+.+++++++.+++.+
T Consensus        57 ~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   57 YFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             SSEEEEEE-TTSSEEEEE
T ss_pred             CccCeEEEcCCCCEEEEE
Confidence            356899999999876655

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PHA02713 hypothetical protein; Provisional

Probab=86.25  E-value=10  Score=27.11  Aligned_cols=51  Identities=10%  Similarity=0.176  Sum_probs=27.3

Q ss_pred             CCCEEEEEeCCC-----cEEEEEcCCCceeE--EeCCCCCceeEEEEccCCCeEEEeecC
Q psy14458         59 SGRLMVSGHEDS-----SCVLYDIRGSRPLQ--TFKPHTADVRSIRFSPSAYYLLTGGYD  111 (125)
Q Consensus        59 ~~~~~~~~~~~~-----~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d  111 (125)
                      ++...+.|+.++     .+..||..+.+...  .+.........+.+  ++.+.+.|+.+
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~  408 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRT  408 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCC
Confidence            456666666543     47889987754322  22211111112222  78888888765

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=85.51  E-value=5.9  Score=25.63  Aligned_cols=54  Identities=17%  Similarity=0.229  Sum_probs=37.9

Q ss_pred             CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEee------cCCeEEEEeCCCC
Q psy14458         69 DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGG------YDNKLVLTDLQGT  122 (125)
Q Consensus        69 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~d~~i~~~~~~~~  122 (125)
                      ...|.+||..+.+....-..-.+.|+.+.|.-+.++++.|.      ....+..||+.+.
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~   74 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ   74 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence            44588999877765554445677899999987777777775      3445777777654

>KOG4441|consensus

Probab=85.34  E-value=7.6  Score=27.83  Aligned_cols=62  Identities=24%  Similarity=0.260  Sum_probs=34.5

Q ss_pred             CCCEEEEEeCC------CcEEEEEcCCCceeEEeCCCCCceeEEEEc-cCCCeEEEeecCCe-----EEEEeCCC
Q psy14458         59 SGRLMVSGHED------SSCVLYDIRGSRPLQTFKPHTADVRSIRFS-PSAYYLLTGGYDNK-----LVLTDLQG  121 (125)
Q Consensus        59 ~~~~~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~d~~-----i~~~~~~~  121 (125)
                      ++...++|+.+      ..+..||.++.+....-....... ..... -+|.+.+.|+.||.     +..||..+
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~-~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~  405 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRS-DFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT  405 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccc-cceeEEECCEEEEEeccccccccccEEEecCCC
Confidence            34566777777      457788888766433111111111 11111 18888899988865     55555544

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.02  E-value=8.6  Score=25.22  Aligned_cols=63  Identities=14%  Similarity=0.208  Sum_probs=36.9

Q ss_pred             CCeEEEEECCCCCEEEEEeC------------------CCcEEEEEcCCCceeEEeC----CCCCceeEEEEccCCCeEE
Q psy14458         49 SPVSALCVDPSGRLMVSGHE------------------DSSCVLYDIRGSRPLQTFK----PHTADVRSIRFSPSAYYLL  106 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~------------------~~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~  106 (125)
                      -.-..+.|.++|+.++.+..                  .-++-+.|..+++.+....    .+.-.+++++..+||..++
T Consensus       162 iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwf  241 (366)
T COG3490         162 IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWF  241 (366)
T ss_pred             cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEE
Confidence            45567788888888777642                  1223333434444333221    2344678888888888777


Q ss_pred             EeecC
Q psy14458        107 TGGYD  111 (125)
Q Consensus       107 ~~~~d  111 (125)
                      .+-..
T Consensus       242 gcQy~  246 (366)
T COG3490         242 GCQYR  246 (366)
T ss_pred             EEEee
Confidence            66543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=84.92  E-value=4.1  Score=21.42  Aligned_cols=50  Identities=12%  Similarity=0.054  Sum_probs=28.5

Q ss_pred             eCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEe-ec-CCeEEEE
Q psy14458         67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTG-GY-DNKLVLT  117 (125)
Q Consensus        67 ~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~-d~~i~~~  117 (125)
                      ..+|.+..||..+++....+..- ..-+.+++++|+.+++.+ +. -+..+.|
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~Et~~~Ri~ryw   85 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAETGRYRILRYW   85 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred             CCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence            36688888998887754434321 234679999999866553 33 3334444

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=84.89  E-value=9.3  Score=25.49  Aligned_cols=31  Identities=13%  Similarity=0.089  Sum_probs=24.1

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHT   90 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~   90 (125)
                      +|+ ++.++.++.++.+|.++++.+..+....
T Consensus       111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~  141 (370)
T COG1520         111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGG  141 (370)
T ss_pred             CCe-EEEecccceEEEEECCCCcEEEEEecCC
Confidence            444 7778888899999998898887776444

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=84.88  E-value=4  Score=30.19  Aligned_cols=68  Identities=16%  Similarity=0.116  Sum_probs=44.5

Q ss_pred             eeecCCCeEEEEECCCCcceeee---cCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTF---KPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCV   73 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~   73 (125)
                      +....||+|.++|..+.+.+...   ......|.++.-.+......    ..+.-++|||++..++.-..+|.+.
T Consensus       275 ~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~----~~~~~vafSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  275 AFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCI----QPPLHVAFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             EEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccC----CCCceEEECcccceEEEEecCCCce
Confidence            45678999999999998776655   11222233332222222111    2566789999999999998888855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PHA03098 kelch-like protein; Provisional

Probab=84.70  E-value=12  Score=26.42  Aligned_cols=49  Identities=12%  Similarity=0.113  Sum_probs=27.0

Q ss_pred             EEEEEcCCCceeEE--eCCCCCceeEEEEccCCCeEEEeecC-----CeEEEEeCCCC
Q psy14458         72 CVLYDIRGSRPLQT--FKPHTADVRSIRFSPSAYYLLTGGYD-----NKLVLTDLQGT  122 (125)
Q Consensus        72 i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~  122 (125)
                      +.+||..+.+....  +.........+.+  ++++++.|+.+     ..+..+|..+.
T Consensus       458 v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        458 VESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             EEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            78888877653321  1111111112222  77777777754     46888887764

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=84.36  E-value=12  Score=27.87  Aligned_cols=67  Identities=18%  Similarity=0.163  Sum_probs=49.9

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEe----CC---------------CCCceeEEEEccCCCeEEEee
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTF----KP---------------HTADVRSIRFSPSAYYLLTGG  109 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~----~~---------------~~~~v~~~~~~~~~~~~~~~~  109 (125)
                      ..|.+++...-+.+++..-.||+|.++|-.+.+.+...    ..               .-..+..++|+|++..++.-.
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~  339 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID  339 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence            67888888888889999999999999998775443333    10               111344688999999999888


Q ss_pred             cCCeEE
Q psy14458        110 YDNKLV  115 (125)
Q Consensus       110 ~d~~i~  115 (125)
                      .++.+.
T Consensus       340 ~~~~~~  345 (753)
T PF11635_consen  340 EDGKTK  345 (753)
T ss_pred             cCCCce
Confidence            888854

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=84.17  E-value=10  Score=25.52  Aligned_cols=70  Identities=16%  Similarity=0.287  Sum_probs=46.4

Q ss_pred             EEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeE-E----eCCCCCceeEEEEccCCCeEEEeec-C--CeEEEEeCCCC
Q psy14458         52 SALCVDPSGRLMVSGH-EDSSCVLYDIRGSRPLQ-T----FKPHTADVRSIRFSPSAYYLLTGGY-D--NKLVLTDLQGT  122 (125)
Q Consensus        52 ~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~-~----~~~~~~~v~~~~~~~~~~~~~~~~~-d--~~i~~~~~~~~  122 (125)
                      ..++++|+++.+.... .++.|.+.|........ .    .. -...-..+.++|++..+..... +  +.+...|..++
T Consensus       163 ~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~  241 (381)
T COG3391         163 TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG  241 (381)
T ss_pred             ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence            7899999998665554 78889999976654442 1    11 1222346889999986555433 2  57877777654

>KOG1916|consensus

Probab=84.10  E-value=0.53  Score=35.06  Aligned_cols=68  Identities=15%  Similarity=0.187  Sum_probs=42.7

Q ss_pred             eEEEEECC---CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeE-----------EEEccCCCeEEEeecCCeEEE
Q psy14458         51 VSALCVDP---SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRS-----------IRFSPSAYYLLTGGYDNKLVL  116 (125)
Q Consensus        51 i~~~~~~~---~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~-----------~~~~~~~~~~~~~~~d~~i~~  116 (125)
                      +.-+.|.|   +..++..+..++.+++........ .-++.|..++..           -..+|||..++..+.||.+++
T Consensus       183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f  261 (1283)
T KOG1916|consen  183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF  261 (1283)
T ss_pred             cceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence            34444554   345566677778888776654321 112334433222           237899999999999999998


Q ss_pred             EeC
Q psy14458        117 TDL  119 (125)
Q Consensus       117 ~~~  119 (125)
                      |.+
T Consensus       262 ~Qi  264 (1283)
T KOG1916|consen  262 YQI  264 (1283)
T ss_pred             eee
Confidence            865

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=82.64  E-value=2.3  Score=16.80  Aligned_cols=23  Identities=0%  Similarity=0.154  Sum_probs=14.4

Q ss_pred             eEEEEccCCCeEEEeecCCeEEE
Q psy14458         94 RSIRFSPSAYYLLTGGYDNKLVL  116 (125)
Q Consensus        94 ~~~~~~~~~~~~~~~~~d~~i~~  116 (125)
                      ..++.+++|+++++=+....|.+
T Consensus         5 ~gvav~~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    5 HGVAVDSDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             EEEEEETTSEEEEEECCCTEEEE
T ss_pred             cEEEEeCCCCEEEEECCCCEEEE
Confidence            45666667766666666655554

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=82.13  E-value=12  Score=24.62  Aligned_cols=71  Identities=20%  Similarity=0.216  Sum_probs=44.1

Q ss_pred             CCeEEEEECCCCCEEEEEeC-----------CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEE-eecCCeEEE
Q psy14458         49 SPVSALCVDPSGRLMVSGHE-----------DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLT-GGYDNKLVL  116 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~-----------~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~~i~~  116 (125)
                      ...+.....|+|.+.++.-.           -|.++.+|. .+.....+..+-..-+.++|+||++.+.. =+..+.|.-
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r  189 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR  189 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence            45667788888877665433           133444443 34444444444444568999999965544 456678888


Q ss_pred             EeCC
Q psy14458        117 TDLQ  120 (125)
Q Consensus       117 ~~~~  120 (125)
                      +++.
T Consensus       190 ~~~d  193 (307)
T COG3386         190 YDLD  193 (307)
T ss_pred             EecC
Confidence            8765

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=82.12  E-value=19  Score=26.94  Aligned_cols=74  Identities=20%  Similarity=0.318  Sum_probs=48.1

Q ss_pred             CCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCC----c-eeEEeCCCCCc----------eeEEEEccCCCeEEEeecCC
Q psy14458         49 SPVSALCVDPS-GRLMVSGHEDSSCVLYDIRGS----R-PLQTFKPHTAD----------VRSIRFSPSAYYLLTGGYDN  112 (125)
Q Consensus        49 ~~i~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~----~-~~~~~~~~~~~----------v~~~~~~~~~~~~~~~~~d~  112 (125)
                      .+...++|+|. ...||..+..|.-.||++...    . .........+.          -..+.|.++...++.++. .
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~  224 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S  224 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence            56789999995 478999999999999999211    1 11111111111          236778877767766644 4


Q ss_pred             eEEEEeCCCCC
Q psy14458        113 KLVLTDLQGTM  123 (125)
Q Consensus       113 ~i~~~~~~~~~  123 (125)
                      .+.++|+++..
T Consensus       225 ~l~~~d~~~~~  235 (765)
T PF10214_consen  225 KLMLIDFESNW  235 (765)
T ss_pred             ceEEEECCCCC
Confidence            57888887653

These proteins are found in fungi.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=81.50  E-value=8.4  Score=26.25  Aligned_cols=31  Identities=29%  Similarity=0.472  Sum_probs=25.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      ..|..++..+..+.+++...+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3499999999999999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=81.18  E-value=21  Score=26.82  Aligned_cols=64  Identities=14%  Similarity=0.214  Sum_probs=44.0

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCc--------eeEEEEc----------------cCCCeEEEeecCCeEE
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTAD--------VRSIRFS----------------PSAYYLLTGGYDNKLV  115 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~~~~~~~d~~i~  115 (125)
                      +..++.++.++.|.-.|..+++.+..+......        ++.+.+-                .++..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            556777888999999999999988877632211        1223321                1334777788899888


Q ss_pred             EEeCCCCC
Q psy14458        116 LTDLQGTM  123 (125)
Q Consensus       116 ~~~~~~~~  123 (125)
                      -.|.+++.
T Consensus       274 ALDA~TGk  281 (764)
T TIGR03074       274 ALDADTGK  281 (764)
T ss_pred             EEECCCCC
Confidence            88887764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=80.81  E-value=9.5  Score=26.24  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=28.4

Q ss_pred             CCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         89 HTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        89 ~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+..+.++..+|++++.++.-.=|.|.++|+.++.
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~  340 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI  340 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh
Confidence            34567889999999888887677889999998763

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=80.42  E-value=20  Score=26.06  Aligned_cols=40  Identities=13%  Similarity=0.238  Sum_probs=27.0

Q ss_pred             cccccccCCCCCeEEEEECCCCCEEEEEeCC-CcEEEEEcC
Q psy14458         39 YTTEAGTRQGSPVSALCVDPSGRLMVSGHED-SSCVLYDIR   78 (125)
Q Consensus        39 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~i~~~d~~   78 (125)
                      ............|.|.||.++|..++.+-.. =.-++||-.
T Consensus       146 srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  146 SRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            3333334556789999999999877665433 336788864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	125
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		6e-10
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-09
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-09
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-09
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-09
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-09
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-06
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		8e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		8e-06
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		9e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-05
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		5e-05
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-05
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-05
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-05
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-05
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-05
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-05
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-05
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-05
2h9l_A	329	Wdr5delta23 Length = 329		5e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-05
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-05
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-05
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-05
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		3e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-04
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		8e-04

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 26/119 (21%)
Query: 7   DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVD----PSGRL 62
           D +C L+D+   + LQ+F  H ADV                      LC+D     +G  
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADV----------------------LCLDLAPSETGNT 212
Query: 63  MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG 121
            VSG  D   +++D+R  + +Q F+ H +DV S+R+ PS     +G  D    L DL+ 
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA 271

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           +V+   D++C L+DI   +   TF  HT DV S+ L                     P  
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA--------------------PDT 196
Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           RL VSG  D+S  L+D+R     QTF  H +D+ +I F P+     TG  D    L DL+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 121 G 121
Sbjct: 257 A 257

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           +V+   D++C L+DI   +   TF  HT DV S+ L                     P  
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA--------------------PDT 196
Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           RL VSG  D+S  L+D+R     QTF  H +D+ +I F P+     TG  D    L DL+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 121 G 121
Sbjct: 257 A 257

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           +V+   D++C L+DI   +   TF  HT DV S+ L                     P  
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA--------------------PDT 196
Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           RL VSG  D+S  L+D+R     QTF  H +D+ +I F P+     TG  D    L DL+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 121 G 121
Sbjct: 257 A 257

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           +V+   D++C L+DI   +   TF  HT DV S+ L                     P  
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA--------------------PDT 196
Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           RL VSG  D+S  L+D+R     QTF  H +D+ +I F P+     TG  D    L DL+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 121 G 121
Sbjct: 257 A 257

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           +V+   D++C L+DI   +   TF  HT DV S+ L                     P  
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA--------------------PDT 207
Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           RL VSG  D+S  L+D+R     QTF  H +D+ +I F P+     TG  D    L DL+
Sbjct: 208 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 267
Query: 121 G 121
Sbjct: 268 A 268

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 25/126 (19%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKP-----HTADVRSIHLDHYTTEAGTRQGSPVSALC 55
           +++G  D +CVL+D+   + +  F       HTADV S+ ++                  
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL---------------- 216
Query: 56  VDPSGRLMVSGHEDSSCVLYDIR-GSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKL 114
              +  + +SG  D++  L+D+R  SR ++T+  H  D+ S++F P      TG  D   
Sbjct: 217 ---NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273
Query: 115 VLTDLQ 120
            L D++
Sbjct: 274 RLFDMR 279

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           +VSG  D S  ++D++    L+T   H+                     PVSA+  +  G
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHS--------------------DPVSAVHFNRDG 164
Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTF-KPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD 118
            L+VS   D  C ++D    + L+T        V  ++FSP+  Y+L    DN L L D
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 51  VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
           VS + +  +G   VS   D S  L++++  +    F  HT DV S+ FSP    +++GG 
Sbjct: 70  VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 111 DNKLVLTDLQG 121
           DN L + +++G
Sbjct: 130 DNALRVWNVKG 140

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           MVS  ED++  ++D       +T K HT  V+ I  DH                    SG
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH--------------------SG 162
Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           +L+ S   D +  L+D +G   ++T   H  +V S+   P+  ++++   D  + + ++Q
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 45  TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYY 104
           T  G      C+    RL+VSG  D++  L+DI     L+  + H   VR IRF      
Sbjct: 291 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR-- 348
Query: 105 LLTGGYDNKLVLTDLQGTMRP 125
           +++G YD K+ + DL   + P
Sbjct: 349 IVSGAYDGKIKVWDLVAALDP 369

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 39  YTTEAGTRQ------GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTAD 92
           +  E+G ++      G  + ++   P G+ + SG  D    ++DI   + L T + H   
Sbjct: 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP 208
Query: 93  VRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           +RS+ FSP +  L+T   D  + + D+Q
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQ 236

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 20/138 (14%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQ------------- 47
           ++SG  D +  +++      + T   HT+ VR +HL      +G+R              
Sbjct: 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 231
Query: 48  -----GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSA 102
                G   +  CV   GR +VSG  D    ++D      L T + HT  V S++F    
Sbjct: 232 LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG 289
Query: 103 YYLLTGGYDNKLVLTDLQ 120
            ++++G  D  + + D++
Sbjct: 290 IHVVSGSLDTSIRVWDVE 307

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 51  VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
           + ++C  P G+ + +G ED    ++DI   + +   + H  D+ S+ + PS   L++G  
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 111 DNKLVLTDLQ 120
           D  + + DL+
Sbjct: 186 DRTVRIWDLR 195

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
           +VSG  D S  ++D++  + L+T   H+  V ++H +                 + T +G
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 45  T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
                       PVS +   P+G+ +++   D++  L+D    + L+T+  H  +   I 
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 97  -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
             FS +   ++++G  DN + + +LQ
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWNLQ 270

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
           +VSG  D S  ++D++  + L+T   H+  V ++H +                 + T +G
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 45  T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
                       PVS +   P+G+ +++   D++  L+D    + L+T+  H  +   I 
Sbjct: 178 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 237
Query: 97  -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
             FS +   ++++G  DN + + +LQ
Sbjct: 238 ANFSVTGGKWIVSGSEDNLVYIWNLQ 263

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
           +VSG  D S  ++D++  + L+T   H+  V ++H +                 + T +G
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 45  T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
                       PVS +   P+G+ +++   D++  L+D    + L+T+  H  +   I 
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 97  -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
             FS +   ++++G  DN + + +LQ
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWNLQ 273

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
           +VSG  D S  ++D++  + L+T   H+  V ++H +                 + T +G
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 45  T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
                       PVS +   P+G+ +++   D++  L+D    + L+T+  H  +   I 
Sbjct: 181 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 240
Query: 97  -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
             FS +   ++++G  DN + + +LQ
Sbjct: 241 ANFSVTGGKWIVSGSEDNLVYIWNLQ 266

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
           +VSG  D S  ++D++  + L+T   H+  V ++H +                 + T +G
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 45  T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
                       PVS +   P+G+ +++   D++  L+D    + L+T+  H  +   I 
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241
Query: 97  -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
             FS +   ++++G  DN + + +LQ
Sbjct: 242 ANFSVTGGKWIVSGSEDNLVYIWNLQ 267

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
           +VSG  D S  ++D++  + L+T   H+  V ++H +                 + T +G
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 45  T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
                       PVS +   P+G+ +++   D++  L+D    + L+T+  H  +   I 
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 97  -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
             FS +   ++++G  DN + + +LQ
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWNLQ 273

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
           +VSG  D S  ++D++  + L+T   H+  V ++H +                 + T +G
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 45  T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
                       PVS +   P+G+ +++   D++  L+D    + L+T+  H  +   I 
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 97  -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
             FS +   ++++G  DN + + +LQ
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWNLQ 273

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
           +VSG  D S  ++D++  + L+T   H+  V ++H +                 + T +G
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 45  T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
                       PVS +   P+G+ +++   D++  L+D    + L+T+  H  +   I 
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 97  -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
             FS +   ++++G  DN + + +LQ
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWNLQ 270

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
           +VSG  D S  ++D++  + L+T   H+  V ++H +                 + T +G
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 45  T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
                       PVS +   P+G+ +++   D++  L+D    + L+T+  H  +   I 
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 97  -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
             FS +   ++++G  DN + + +LQ
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWNLQ 270

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
           +VSG  D S  ++D++  + L+T   H+  V ++H +                 + T +G
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 45  T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
                       PVS +   P+G+ +++   D++  L+D    + L+T+  H  +   I 
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241
Query: 97  -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
             FS +   ++++G  DN + + +LQ
Sbjct: 242 ANFSVTGGKWIVSGSEDNLVYIWNLQ 267

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
           +VSG  D S  ++D++  + L+T   H+  V ++H +                 + T +G
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 45  T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
                       PVS +   P+G+ +++   D++  L+D    + L+T+  H  +   I 
Sbjct: 199 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 258
Query: 97  -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
             FS +   ++++G  DN + + +LQ
Sbjct: 259 ANFSVTGGKWIVSGSEDNLVYIWNLQ 284

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
           +VSG  D S  ++D++  + L+T   H+  V ++H +                 + T +G
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
Query: 45  T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
                       PVS +   P+G+ +++   D++  L+D    + L+T+  H  +   I 
Sbjct: 206 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 265
Query: 97  -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
             FS +   ++++G  DN + + +LQ
Sbjct: 266 ANFSVTGGKWIVSGSEDNLVYIWNLQ 291

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
           +VSG  D S  ++D++  + L+T   H+  V ++H +                 + T +G
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Query: 45  T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
                       PVS +   P+G+ +++   D++  L+D    + L+T+  H  +   I 
Sbjct: 204 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 263
Query: 97  -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
             FS +   ++++G  DN + + +LQ
Sbjct: 264 ANFSVTGGKWIVSGSEDNLVYIWNLQ 289

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
           +VSG  D S  ++D++  + L+T   H+  V ++H +                 + T +G
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Query: 45  T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
                       PVS +   P+G+ +++   D++  L+D    + L+T+  H  +   I 
Sbjct: 183 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 242
Query: 97  -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
             FS +   ++++G  DN + + +LQ
Sbjct: 243 ANFSVTGGKWIVSGSEDNLVYIWNLQ 268

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
           +VSG  D S  ++D++  + L+T   H+  V ++H +                 + T +G
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Query: 45  T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
                       PVS +   P+G+ +++   D++  L+D    + L+T+  H  +   I 
Sbjct: 187 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 246
Query: 97  -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
             FS +   ++++G  DN + + +LQ
Sbjct: 247 ANFSVTGGKWIVSGSEDNLVYIWNLQ 272

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQG------------ 48
           +  G   +   L+D++  + L+    H+A V S+  + Y   +G+R G            
Sbjct: 82  LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 141
Query: 49  ---------SPVSALCVDPSGRLMVSGHEDSSCVLYDIR----GSRPLQTFKPHTADVRS 95
                      V  L   P GR + SG  D+   ++       G  PLQTF  H   V++
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201
Query: 96  IRFSP-SAYYLLTGG 109
           + + P  +  L TGG
Sbjct: 202 VAWCPWQSNVLATGG 216

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
           +VSG  D S  ++D++    L+T   H+  V ++H +                 + T +G
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 45  T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
                       PVS +   P+G+ +++   D++  L+D    + L+T+  H  +   I 
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 97  -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
             FS +   ++++G  DN + + +LQ
Sbjct: 245 ANFSVTGGKWIVSGSEDNMVYIWNLQ 270

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 22/120 (18%)
Query: 12  LYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQG---------------------SP 50
           +YD+     L+T   H A V  +  + +   +G+R G                     S 
Sbjct: 160 IYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE 219
Query: 51  VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLL-TGG 109
           V  L     G  + SG  D+   ++D R S P  T   H A V+++ + P    LL TGG
Sbjct: 220 VCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG 279

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQG------------ 48
           +  G   +   L+D++  + L+    H+A V S+  + Y   +G+R G            
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 221
Query: 49  ---------SPVSALCVDPSGRLMVSGHEDSSCVLYDIR----GSRPLQTFKPHTADVRS 95
                      V  L   P GR + SG  D+   ++       G  PLQTF  H   V++
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 96  IRFSP-SAYYLLTGG 109
           + + P  +  L TGG
Sbjct: 282 VAWCPWQSNVLATGG 296

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQG------------ 48
           +  G   +   L+D++  + L+    H+A V S+  + Y   +G+R G            
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 232
Query: 49  ---------SPVSALCVDPSGRLMVSGHEDSSCVLYDIR----GSRPLQTFKPHTADVRS 95
                      V  L   P GR + SG  D+   ++       G  PLQTF  H   V++
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 96  IRFSP-SAYYLLTGG 109
           + + P  +  L TGG
Sbjct: 293 VAWCPWQSNVLATGG 307

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.95
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.94
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.94
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.94
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.93
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.93
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.93
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.93
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.93
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.93
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.92
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.92
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.92
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.92
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.92
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.92
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.92
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.91
2pm7_B	297	Protein transport protein SEC13, protein transport	99.91
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.91
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.91
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.91
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.91
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.91
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.91
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.91
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.91
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.91
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.91
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.9
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.9
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.9
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.9
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.9
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.9
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.9
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.9
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.9
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.89
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.89
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.89
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.89
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.89
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.88
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.88
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.88
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.88
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.88
2pm7_B	297	Protein transport protein SEC13, protein transport	99.88
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.88
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.88
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.88
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.88
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.88
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.88
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.88
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.88
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.88
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.88
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.88
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.87
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.87
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.87
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.87
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.87
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.87
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.86
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.86
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.86
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.86
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.86
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.86
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.86
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.86
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.86
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.86
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.86
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.86
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.86
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.86
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.86
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.86
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.85
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.85
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.85
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.85
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.85
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.85
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.85
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.85
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.85
3jro_A	753	Fusion protein of protein transport protein SEC13	99.85
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.84
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.84
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.84
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.84
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.84
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.84
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.84
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.84
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.83
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.83
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.83
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.83
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.83
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.83
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.83
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.83
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
3jro_A	753	Fusion protein of protein transport protein SEC13	99.82
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.82
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.82
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.82
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.81
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.81
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.81
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.8
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.79
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.78
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.77
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.77
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.73
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.7
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.69
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.68
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.67
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.67
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.6
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.58
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.56
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.51
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.46
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.46
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.45
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.44
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.44
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.44
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.44
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.41
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.4
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.4
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.39
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.39
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.35
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.34
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.34
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.33
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.33
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.31
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.31
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.29
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.29
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.28
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.28
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.25
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.22
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.22
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.2
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.19
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.18
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.18
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.16
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.13
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.12
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.1
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.06
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.05
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.04
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.99
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.98
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.96
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.96
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.95
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.94
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.92
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.91
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.89
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.89
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.86
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.81
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.77
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.72
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.72
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.69
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.67
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.66
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.65
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.65
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.64
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.62
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.61
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.57
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.55
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.54
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.53
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.53
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.5
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.48
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.42
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.4
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.38
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.35
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.34
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.2
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.2
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.2
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.19
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.16
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.09
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.06
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.05
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.05
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.04
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.01
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.98
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.95
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.95
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.94
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.93
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.92
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.92
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.9
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.88
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.88
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.85
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.8
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.8
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.8
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.8
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.79
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.77
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.76
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.74
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.72
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.72
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.71
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.67
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.62
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.62
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.62
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.55
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.52
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.35
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.33
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.14
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.0
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.97
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.84
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.84
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.78
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.7
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.68
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.62
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.6
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.59
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.38
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.36
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.29
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.24
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.16
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.12
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.02
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.87
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	95.86
3v65_B	386	Low-density lipoprotein receptor-related protein;	95.79
3v65_B	386	Low-density lipoprotein receptor-related protein;	95.7
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.58
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.46
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.46
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.37
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	95.32
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.09
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.08
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	94.98
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.97
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.95
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	94.79
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.71
4a2l_A	795	BT_4663, two-component system sensor histidine kin	94.61
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	94.56
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	94.42
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.41
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.4
3v9f_A	781	Two-component system sensor histidine kinase/RESP	93.89
3kya_A	496	Putative phosphatase; structural genomics, joint c	93.85
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	93.73
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	93.69
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	92.91
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.47
3v9f_A	781	Two-component system sensor histidine kinase/RESP	92.08
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	91.87
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.52
3kya_A	496	Putative phosphatase; structural genomics, joint c	91.33
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	90.41
2p4o_A	306	Hypothetical protein; putative lactonase, structur	90.03
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.98
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	89.85
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	89.75
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	88.82
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	88.77
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	88.43
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	88.17
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	88.09
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	88.06
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.52
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	87.16
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	87.06
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	86.83
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	86.74
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	86.51
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	86.37
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	85.77
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	85.48
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	85.46
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	85.28
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	84.93
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	83.62
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	83.39
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	83.26
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.19
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	82.42
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	81.94
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	81.18
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	80.35
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	80.05

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.95  E-value=2.9e-26  Score=146.68  Aligned_cols=120  Identities=17%  Similarity=0.233  Sum_probs=99.9

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc----------------------------------------
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT----------------------------------------   41 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------------------------   41 (125)
                      ++++.|++|++||+.+++++..+. +..+|.++.|.+...                                        
T Consensus       151 as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp  229 (365)
T 4h5i_A          151 ASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA  229 (365)
T ss_dssp             EESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE
T ss_pred             EECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC
Confidence            467789999999999988877765 566777777743100                                        


Q ss_pred             ---------------------------------ccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEe-C
Q psy14458         42 ---------------------------------EAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTF-K   87 (125)
Q Consensus        42 ---------------------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~   87 (125)
                                                       .....+...|++++|+|++++|++|+.|+.|++||+.+++++..+ .
T Consensus       230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~  309 (365)
T 4h5i_A          230 DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ  309 (365)
T ss_dssp             TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT
T ss_pred             CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC
Confidence                                             000134567999999999999999999999999999999998875 6


Q ss_pred             CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         88 PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        88 ~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +|...|++++|+||+++|++++.|++|+||++...
T Consensus       310 gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          310 AHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            89999999999999999999999999999999654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.94  E-value=4.2e-25  Score=139.20  Aligned_cols=120  Identities=21%  Similarity=0.318  Sum_probs=108.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccc----------------------cccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTE----------------------AGTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------------~~~~~~~~i~~~~~~~   58 (125)
                      |++|+.|+.|++||+++++.+..+.+|..+|+++.|.+....                      ....|...|.+++|+|
T Consensus       179 lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp  258 (321)
T 3ow8_A          179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP  258 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC
Confidence            578999999999999999999999999999999999753211                      1135677899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ++.++++++.|+.|++||+.+++++..+..|...|.+++|+|++..|++++.|++|++||+.
T Consensus       259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999963

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.94  E-value=3.7e-25  Score=140.71  Aligned_cols=122  Identities=21%  Similarity=0.319  Sum_probs=103.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccc---cc----------------------cCCCCCeEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTE---AG----------------------TRQGSPVSALC   55 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~----------------------~~~~~~i~~~~   55 (125)
                      |++|+.|+.|++||+.+++++..+.+|...|+++.|.+....   ..                      ..+...+.+++
T Consensus       142 l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  221 (344)
T 4gqb_B          142 AVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA  221 (344)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeee
Confidence            589999999999999999999999999999999998653211   11                      12345688999


Q ss_pred             ECCC-CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCCCC
Q psy14458         56 VDPS-GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        56 ~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~  122 (125)
                      |+|+ +.++++|+.|+.|++||+++++++..+..|...|.+++|+|++ ++|++|+.|++|++||++++
T Consensus       222 ~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          222 WHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             ecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence            9996 5788999999999999999999999999999999999999987 58999999999999999875

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.94  E-value=1.1e-24  Score=136.12  Aligned_cols=123  Identities=15%  Similarity=0.225  Sum_probs=107.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcc----------------------cccccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYT----------------------TEAGTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~----------------------~~~~~~~~~~i~~~~~~~   58 (125)
                      |++++.|+.|++||+.+++.+..+..+..+|.++.|.+..                      ......|...|.+++|+|
T Consensus        28 l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~  107 (304)
T 2ynn_A           28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP  107 (304)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred             EEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcC
Confidence            5899999999999999999999999999999999885422                      122236788999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCC-ceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGS-RPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +++++++|+.|+.|++||++++ .....+.+|...|.+++|+| ++..+++|+.|++|++||+++..
T Consensus       108 ~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~  174 (304)
T 2ynn_A          108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST  174 (304)
T ss_dssp             SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS
T ss_pred             CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            9999999999999999999887 45567889999999999999 67899999999999999997653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.93  E-value=1.3e-24  Score=136.99  Aligned_cols=123  Identities=21%  Similarity=0.374  Sum_probs=108.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccc----------------------ccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEA----------------------GTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------------------~~~~~~~i~~~~~~~   58 (125)
                      +++++.|+.|++||+.+++.+..+..+...+.++.|.+.....                      ...+...+.+++|+|
T Consensus        95 l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp  174 (321)
T 3ow8_A           95 AASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP  174 (321)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT
T ss_pred             EEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC
Confidence            4789999999999999999988888888888888886532211                      124556799999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +++++++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.|++|++||++++.
T Consensus       175 dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          175 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN  239 (321)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999998653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.93  E-value=2.5e-24  Score=139.49  Aligned_cols=122  Identities=23%  Similarity=0.327  Sum_probs=110.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc----------------------ccccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT----------------------EAGTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------~~~~~~~~~i~~~~~~~   58 (125)
                      |++|+.|++|++||+.+++....+.+|...|.++.|.+...                      .....|...|.+++|+|
T Consensus       123 l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p  202 (410)
T 1vyh_C          123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP  202 (410)
T ss_dssp             EEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECS
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeC
Confidence            58999999999999999999999999999999999975321                      11235678899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++.++++++.|+.|++||+.+++++..+..|...|.++.++|++.++++++.|++|++||++++
T Consensus       203 ~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~  266 (410)
T 1vyh_C          203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK  266 (410)
T ss_dssp             SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999765

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.93  E-value=2.2e-24  Score=136.62  Aligned_cols=118  Identities=24%  Similarity=0.361  Sum_probs=104.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc---------------------c---CCCCCeEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG---------------------T---RQGSPVSALCV   56 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------------------~---~~~~~i~~~~~   56 (125)
                      |++|+.|+.|++||++++++...+.+|..+|.++.|++......                     .   .+...+.+++|
T Consensus       199 l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~  278 (340)
T 1got_B          199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF  278 (340)
T ss_dssp             EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEE
Confidence            57899999999999999999999999999999999975321111                     0   12246899999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         57 DPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        57 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      +|++.++++|+.|+.|++||..+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||
T Consensus       279 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.93  E-value=8.1e-24  Score=133.09  Aligned_cols=122  Identities=20%  Similarity=0.315  Sum_probs=107.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc---------------------ccccCCCCCeEEEEECCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT---------------------EAGTRQGSPVSALCVDPS   59 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~~~i~~~~~~~~   59 (125)
                      |++|+.|++|++||+.+++.+..+.+|..+|.++.|++...                     .....|...+.+++++|.
T Consensus        80 l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~  159 (319)
T 3frx_A           80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPN  159 (319)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC
T ss_pred             EEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccC
Confidence            57999999999999999999999999999999999875321                     112356778999999985


Q ss_pred             C------CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         60 G------RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        60 ~------~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .      ..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.|++|++||++++
T Consensus       160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             ------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             CCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            3      48999999999999999999998899999999999999999999999999999999999875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.93  E-value=6.9e-24  Score=135.15  Aligned_cols=118  Identities=24%  Similarity=0.367  Sum_probs=104.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc----------------------c--CCCCCeEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG----------------------T--RQGSPVSALCV   56 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------------~--~~~~~i~~~~~   56 (125)
                      |++|+.|+.|++||+++++++..+..|..+|.++.|++......                      .  .....+.+++|
T Consensus       213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (354)
T 2pbi_B          213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF  292 (354)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence            57899999999999999999999999999999999975321111                      0  12246789999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         57 DPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        57 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      +|++.++++|+.|+.|++||+.+++.+..+.+|.+.|.+++|+|++++|++|+.|++|++|+
T Consensus       293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             eCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.93  E-value=3.2e-24  Score=136.43  Aligned_cols=103  Identities=23%  Similarity=0.361  Sum_probs=92.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeee----cCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTF----KPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYD   76 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d   76 (125)
                      |++|+.|++|++||+.+++.+..+    .+|.                    ..|.+++|+|++++|++|+.|+.|++||
T Consensus        96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~--------------------~~V~~v~~spdg~~l~sgs~d~~i~iwd  155 (344)
T 4gqb_B           96 ILVASDSGAVELWELDENETLIVSKFCKYEHD--------------------DIVSTVSVLSSGTQAVSGSKDICIKVWD  155 (344)
T ss_dssp             EEEEETTSEEEEEEECTTSSCEEEEEEEECCS--------------------SCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEEECCCEEEEEeccCCCceeEeeccccCCC--------------------CCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            578999999999999988765443    2555                    7899999999999999999999999999


Q ss_pred             cCCCceeEEeCCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCCCCC
Q psy14458         77 IRGSRPLQTFKPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.+++.+..+.+|.+.|.++.|+|++ .++++++.|++|++||++++.
T Consensus       156 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~  203 (344)
T 4gqb_B          156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK  203 (344)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS
T ss_pred             CCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc
Confidence            99999999999999999999999987 478999999999999998764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.92  E-value=1.5e-23  Score=131.11  Aligned_cols=123  Identities=20%  Similarity=0.293  Sum_probs=105.0

Q ss_pred             CeeecCCCeEEEEECCCC-cceeeecCCCCCeEEEEecCcc---cccc---------------------cCCCCCeEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGS-RPLQTFKPHTADVRSIHLDHYT---TEAG---------------------TRQGSPVSALC   55 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~---~~~~---------------------~~~~~~i~~~~   55 (125)
                      |++|+.|++|++||++++ .....+.+|...|.++.|++..   ....                     ..+...+..++
T Consensus       112 l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~  191 (304)
T 2ynn_A          112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD  191 (304)
T ss_dssp             EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEE
T ss_pred             EEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEE
Confidence            589999999999999877 4456788899999999997621   1111                     13446788899


Q ss_pred             ECC--CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         56 VDP--SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        56 ~~~--~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ++|  ++.++++++.|+.|++||+++++++..+.+|...|.++.|+|++.+|++++.|++|++||++++.
T Consensus       192 ~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             ECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            987  66899999999999999999999999999999999999999999999999999999999998753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.92  E-value=8.3e-24  Score=135.76  Aligned_cols=124  Identities=24%  Similarity=0.446  Sum_probs=104.5

Q ss_pred             CeeecCCCeEEEEECC-CCcceeeecCCCCCeEEEEecCccccccc-----------------------------CCCCC
Q psy14458          1 MVSGHEDSSCVLYDIR-GSRPLQTFKPHTADVRSIHLDHYTTEAGT-----------------------------RQGSP   50 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------------------~~~~~   50 (125)
                      |++|+.|++|++||++ ..+.+..+.+|..+|.++.|.+.......                             .+...
T Consensus       221 l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  300 (380)
T 3iz6_a          221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI  300 (380)
T ss_dssp             EEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCS
T ss_pred             EEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCc
Confidence            5799999999999998 45778888999999999999753211110                             11124


Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEe----CCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCC
Q psy14458         51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTF----KPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMR  124 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  124 (125)
                      +.+++|+|++.++++|+.||.|++||..+++.+..+    .+|.+.|.+++|+|++.+|++|+.|++|++|++.+..+
T Consensus       301 v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             CSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred             eEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence            889999999999999999999999999998887776    57999999999999999999999999999999987643

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.92  E-value=7e-24  Score=134.33  Aligned_cols=102  Identities=36%  Similarity=0.564  Sum_probs=96.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      +++++.|+.|++||+.+++.+..+.+|.                    ..|.+++|+|++.++++|+.|+.|++||++++
T Consensus       157 l~s~s~d~~i~~wd~~~~~~~~~~~~h~--------------------~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~  216 (340)
T 1got_B          157 IVTSSGDTTCALWDIETGQQTTTFTGHT--------------------GDVMSLSLAPDTRLFVSGACDASAKLWDVREG  216 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCS--------------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEEECCCcEEEEECCCCcEEEEEcCCC--------------------CceEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            4789999999999999999988888887                    78899999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +....+..|...|.+++|+|++.++++++.|++|++||++++
T Consensus       217 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence            999999999999999999999999999999999999999865

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.92  E-value=1.9e-23  Score=135.33  Aligned_cols=123  Identities=21%  Similarity=0.334  Sum_probs=108.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc----------------------ccccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT----------------------EAGTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------~~~~~~~~~i~~~~~~~   58 (125)
                      |++|+.|++|++||++++.++..+.+|...|..+.+++...                      .....|...+.+++|+|
T Consensus       207 l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~  286 (410)
T 1vyh_C          207 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP  286 (410)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECC
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcC
Confidence            57999999999999999999999999999999998865321                      11235677899999999


Q ss_pred             C--------------------CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         59 S--------------------GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        59 ~--------------------~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      +                    +.++++|+.|+.|++||+++++++..+.+|...|.++.|+|+++++++++.|++|++||
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd  366 (410)
T 1vyh_C          287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD  366 (410)
T ss_dssp             SCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred             cccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            6                    67899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy14458        119 LQGTM  123 (125)
Q Consensus       119 ~~~~~  123 (125)
                      ++++.
T Consensus       367 ~~~~~  371 (410)
T 1vyh_C          367 YKNKR  371 (410)
T ss_dssp             CTTSC
T ss_pred             CCCCc
Confidence            97654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.92  E-value=3.8e-23  Score=129.24  Aligned_cols=123  Identities=17%  Similarity=0.286  Sum_probs=110.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc----------------------ccccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT----------------------EAGTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------~~~~~~~~~i~~~~~~~   58 (125)
                      |++++.|+.|++|++.+++....+.+|..+|.++.|.+...                      .....|...+.+++|+|
T Consensus        38 l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  117 (312)
T 4ery_A           38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP  117 (312)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred             EEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence            57999999999999999998889999999999999975321                      11125678899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +++++++++.|+.|++||+++++.+..+..|...|.++.|+|+++++++++.|+.|++||++++.
T Consensus       118 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  182 (312)
T 4ery_A          118 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  182 (312)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999998753

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.92  E-value=4e-23  Score=130.91  Aligned_cols=121  Identities=24%  Similarity=0.333  Sum_probs=104.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc------------------------cCCCCCeEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG------------------------TRQGSPVSALCV   56 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------------------~~~~~~i~~~~~   56 (125)
                      |++|+.|++|++||+++++.+..+.+|..+|.++.|++......                        ..+...+.+++|
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEE
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeee
Confidence            47999999999999999999999999999999999975321111                        146678999999


Q ss_pred             CCCC----------CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         57 DPSG----------RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        57 ~~~~----------~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +|++          .++++++.|+.|++|| ...+....+..|...|.+++|+|++++|++++.|+.|++||+++.
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~  245 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL  245 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred             ccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            9986          7899999999999999 456667778899999999999999999999999999999999543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.92  E-value=2.9e-23  Score=132.42  Aligned_cols=122  Identities=17%  Similarity=0.244  Sum_probs=105.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc--c-----------------------cccCCCCCeEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT--E-----------------------AGTRQGSPVSALC   55 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~-----------------------~~~~~~~~i~~~~   55 (125)
                      |++|+.|+.|++||+.+++.+..+.+|...|+++.|.+...  .                       ....+...+.+++
T Consensus       154 l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~  233 (357)
T 4g56_B          154 AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVT  233 (357)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchh
Confidence            57999999999999999999999999999999999864221  0                       0013445689999


Q ss_pred             ECCCC-CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCCCC
Q psy14458         56 VDPSG-RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        56 ~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~  122 (125)
                      |+|++ .++++|+.|+.|++||+++++.+..+..|...|.+++|+|++ ++|++++.|++|++||++++
T Consensus       234 ~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          234 WHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             ECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred             hhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence            99975 788999999999999999999999999999999999999987 68999999999999999875

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.91  E-value=1.6e-23  Score=133.58  Aligned_cols=101  Identities=22%  Similarity=0.323  Sum_probs=90.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~   79 (125)
                      |++|+.|+.|++||+++++++..+.++.                    ..|++++|+|++ .+|++++.|+.|++||+.+
T Consensus       242 la~g~~d~~i~~wd~~~~~~~~~~~~~~--------------------~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~  301 (357)
T 4g56_B          242 FACGDETGNVSLVNIKNPDSAQTSAVHS--------------------QNITGLAYSYHSSPFLASISEDCTVAVLDADF  301 (357)
T ss_dssp             EEEEESSSCEEEEESSCGGGCEEECCCS--------------------SCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred             EEEeecccceeEEECCCCcEeEEEeccc--------------------eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence            4789999999999999999998888887                    788999999987 6799999999999999999


Q ss_pred             CceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++.+..+ +|.+.|++++|+| ++.+|++++.|++|++|++.+.
T Consensus       302 ~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          302 SEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             CEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             CcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            8877655 6999999999999 8999999999999999999754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.91  E-value=1e-22  Score=126.93  Aligned_cols=122  Identities=17%  Similarity=0.257  Sum_probs=101.4

Q ss_pred             CeeecCCCeEEEEECCCCc--ceeeecCCCCCeEEEEecCcc----c----------------------ccccCCCCCeE
Q psy14458          1 MVSGHEDSSCVLYDIRGSR--PLQTFKPHTADVRSIHLDHYT----T----------------------EAGTRQGSPVS   52 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~----~----------------------~~~~~~~~~i~   52 (125)
                      |++|+.|++|++||+.+++  .+..+..|...|.++.|.+..    +                      .....|...+.
T Consensus        70 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~  149 (297)
T 2pm7_B           70 LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN  149 (297)
T ss_dssp             EEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEE
T ss_pred             EEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccc
Confidence            5899999999999998774  556677889999999997531    0                      01124567899


Q ss_pred             EEEECCC-------------CCEEEEEeCCCcEEEEEcCCCc----eeEEeCCCCCceeEEEEccCC---CeEEEeecCC
Q psy14458         53 ALCVDPS-------------GRLMVSGHEDSSCVLYDIRGSR----PLQTFKPHTADVRSIRFSPSA---YYLLTGGYDN  112 (125)
Q Consensus        53 ~~~~~~~-------------~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~d~  112 (125)
                      +++|+|+             +.+|++|+.|+.|++||+++++    ....+.+|...|.+++|+|++   .+|++++.|+
T Consensus       150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~  229 (297)
T 2pm7_B          150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR  229 (297)
T ss_dssp             EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence            9999997             4689999999999999998765    566788999999999999984   8999999999


Q ss_pred             eEEEEeCCCC
Q psy14458        113 KLVLTDLQGT  122 (125)
Q Consensus       113 ~i~~~~~~~~  122 (125)
                      +|++||+++.
T Consensus       230 ~v~iWd~~~~  239 (297)
T 2pm7_B          230 TCIIWTQDNE  239 (297)
T ss_dssp             CEEEEEESST
T ss_pred             cEEEEEeCCC
Confidence            9999998764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.91  E-value=4.6e-23  Score=131.36  Aligned_cols=102  Identities=31%  Similarity=0.586  Sum_probs=94.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP--SGRLMVSGHEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~d~~   78 (125)
                      |++++.|++|++||+.+++.+..+.+|.                    ..+.+++++|  +++++++|+.|+.|++||++
T Consensus       169 l~t~s~D~~v~lwd~~~~~~~~~~~~h~--------------------~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~  228 (354)
T 2pbi_B          169 ILTASGDGTCALWDVESGQLLQSFHGHG--------------------ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR  228 (354)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCS--------------------SCEEEEEECCCSSCCEEEEEETTSCEEEEETT
T ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEcCCC--------------------CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            5789999999999999999998888887                    6778888887  46899999999999999999


Q ss_pred             CCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         79 GSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +++.+..+..|...|.+++|+|++.++++++.|++|++||+++.
T Consensus       229 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          229 SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            99999999999999999999999999999999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.91  E-value=2.6e-23  Score=131.80  Aligned_cols=101  Identities=24%  Similarity=0.465  Sum_probs=90.4

Q ss_pred             CeeecCCCeEEEEECCCCc-------ceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSR-------PLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCV   73 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~   73 (125)
                      |++|+.|++|++||+...+       +...+.+|.                    ..|.+++|+|++.++++++.|+.|+
T Consensus        42 l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~--------------------~~V~~~~~~~~~~~l~s~s~D~~v~  101 (343)
T 2xzm_R           42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN--------------------HFVSDLALSQENCFAISSSWDKTLR  101 (343)
T ss_dssp             EEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCS--------------------SCEEEEEECSSTTEEEEEETTSEEE
T ss_pred             EEEEcCCCEEEEEECCcCCcccccccccchhccCC--------------------CceEEEEECCCCCEEEEEcCCCcEE
Confidence            5899999999999987543       334455555                    7899999999999999999999999


Q ss_pred             EEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         74 LYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        74 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      +||+++++.+..+.+|...|.+++|+|+++++++++.|++|++||+..
T Consensus       102 lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R          102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG  149 (343)
T ss_dssp             EEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred             EEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence            999999999999999999999999999999999999999999999863

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.91  E-value=9.5e-23  Score=139.17  Aligned_cols=123  Identities=24%  Similarity=0.330  Sum_probs=108.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccc-------------------------ccCCCCCeEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEA-------------------------GTRQGSPVSALC   55 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------------------~~~~~~~i~~~~   55 (125)
                      |++|+.|+.|++||+.+++....+.+|..+|.++.|++.....                         ...|...|.+++
T Consensus       445 l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~  524 (694)
T 3dm0_A          445 ALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVR  524 (694)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEE
Confidence            5799999999999999999999999999999999986532110                         124667799999


Q ss_pred             ECCCC--CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         56 VDPSG--RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        56 ~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      |+|++  ..+++++.|+.|++||+++++....+..|...|.+++|+|+++++++++.|++|++||++++.
T Consensus       525 ~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             ECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred             EeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            99986  689999999999999999999999999999999999999999999999999999999998753

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.91  E-value=1.7e-23  Score=132.13  Aligned_cols=120  Identities=10%  Similarity=0.134  Sum_probs=85.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCC---CeEEEEecCcccccc------------------------cCCCCCeEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTA---DVRSIHLDHYTTEAG------------------------TRQGSPVSA   53 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~------------------------~~~~~~i~~   53 (125)
                      |++|+.|++|++||+.+++++..+.++..   .+.++.|.+......                        ...+..+..
T Consensus       196 LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v  275 (356)
T 2w18_A          196 LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV  275 (356)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEE
T ss_pred             EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE
Confidence            47899999999999999999999875432   444444443221110                        001111111


Q ss_pred             EEEC-CC------------CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCcee-EEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         54 LCVD-PS------------GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVR-SIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        54 ~~~~-~~------------~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      +.+. |+            +.++++++.|++|++||+.+++.+..+.+|...+. +++|+|||++|++|+.|++|++||+
T Consensus       276 ~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          276 MLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            1111 32            34689999999999999999999999998887665 5899999999999999999999996


Q ss_pred             C
Q psy14458        120 Q  120 (125)
Q Consensus       120 ~  120 (125)
                      .
T Consensus       356 ~  356 (356)
T 2w18_A          356 S  356 (356)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.3e-22  Score=128.16  Aligned_cols=122  Identities=16%  Similarity=0.283  Sum_probs=97.9

Q ss_pred             CeeecCCCeEEEEECCCC--cceeee-cC-CCCCeEEEEecCccc-----------------------------ccccCC
Q psy14458          1 MVSGHEDSSCVLYDIRGS--RPLQTF-KP-HTADVRSIHLDHYTT-----------------------------EAGTRQ   47 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~--~~~~~~-~~-~~~~i~~~~~~~~~~-----------------------------~~~~~~   47 (125)
                      |++|+.|++|++||+..+  +....+ .. |..+|+++.|++...                             .....|
T Consensus        27 las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h  106 (330)
T 2hes_X           27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH  106 (330)
T ss_dssp             EEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC--
T ss_pred             EEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC
Confidence            589999999999999875  344455 34 889999999865221                             012356


Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC----CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG----SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ...|.+++|+|++++|++++.|+.|++||+..    .+.+..+..|...|.+++|+|++.+|++++.|++|++||++++
T Consensus       107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             --CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            78899999999999999999999999999953    2456778899999999999999999999999999999997643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.91  E-value=1.6e-22  Score=130.25  Aligned_cols=122  Identities=20%  Similarity=0.335  Sum_probs=103.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc---------------------cCCCCCeEEEEECC-
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG---------------------TRQGSPVSALCVDP-   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------------------~~~~~~i~~~~~~~-   58 (125)
                      |++|+.|+.|++||+.+++.+..+.+|..+|.++.|.+......                     ..+...+.+++++| 
T Consensus       138 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~  217 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG  217 (393)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC
Confidence            57899999999999999999999999999999999975321111                     13446789999999 


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEe-------CCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTF-------KPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++.++++++.|+.|++||+++++.+..+       .+|...|.+++|+|+++++++++.|+.|++||+++.
T Consensus       218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            8899999999999999999998877666       468899999999999999999999999999999764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.91  E-value=3.1e-23  Score=130.45  Aligned_cols=101  Identities=23%  Similarity=0.439  Sum_probs=91.3

Q ss_pred             CeeecCCCeEEEEECCCC-----cceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGS-----RPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLY   75 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~   75 (125)
                      |++|+.|++|++|++...     .++..+.+|.                    ..|.+++|+|++.++++++.|+.|++|
T Consensus        33 l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~--------------------~~v~~~~~s~dg~~l~s~s~D~~v~~w   92 (319)
T 3frx_A           33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS--------------------HIVQDCTLTADGAYALSASWDKTLRLW   92 (319)
T ss_dssp             EEEEETTSEEEEEEEEEETTEEEEEEEEEECCS--------------------SCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             EEEecCCccEEEecCCCCCccccccceEEeCCc--------------------ccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            589999999999998642     2345566666                    788999999999999999999999999


Q ss_pred             EcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         76 DIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        76 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      |+.+++.+..+.+|...|.+++|+|++.++++++.|++|++||++.
T Consensus        93 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~  138 (319)
T 3frx_A           93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG  138 (319)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS
T ss_pred             ECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            9999999999999999999999999999999999999999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.91  E-value=1.7e-22  Score=129.70  Aligned_cols=122  Identities=25%  Similarity=0.460  Sum_probs=102.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeee-----cCCCCCeEEEEecCcc------------------------cccccCCCCCe
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTF-----KPHTADVRSIHLDHYT------------------------TEAGTRQGSPV   51 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~------------------------~~~~~~~~~~i   51 (125)
                      |++|+.|++|++||+.+++.+..+     .+|...|.++.+++..                        ......|...|
T Consensus       173 l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v  252 (380)
T 3iz6_a          173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDI  252 (380)
T ss_dssp             EEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCC
T ss_pred             EEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCe
Confidence            579999999999999999887766     5688889988875311                        11123577889


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCC-------CceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         52 SALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHT-------ADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .+++|+|++.++++++.|+.|++||+++++.+..+..+.       ..|.+++|+|+++++++|+.|+.|++||+.++
T Consensus       253 ~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~  330 (380)
T 3iz6_a          253 NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA  330 (380)
T ss_dssp             CEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred             EEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence            999999999999999999999999999998888776432       24889999999999999999999999998654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.91  E-value=1.6e-22  Score=136.58  Aligned_cols=122  Identities=21%  Similarity=0.305  Sum_probs=105.5

Q ss_pred             CeeecCCCeEEEEECCCCcc--eeeecCCCCCeEEEEecCcccc------------------------cccCCCCCeEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRP--LQTFKPHTADVRSIHLDHYTTE------------------------AGTRQGSPVSAL   54 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~------------------------~~~~~~~~i~~~   54 (125)
                      |++|+.|++|++||+.+++.  ...+.+|..+|.++.|++....                        ....|...|.++
T Consensus        74 lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v  153 (611)
T 1nr0_A           74 CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSV  153 (611)
T ss_dssp             EEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEE
T ss_pred             EEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEE
Confidence            58999999999999975543  4567789999999999764321                        123577889999


Q ss_pred             EECCCCC-EEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         55 CVDPSGR-LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        55 ~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +|+|++. .+++++.|+.|++||..+++....+.+|...|.+++|+|+++++++++.|++|++||++++
T Consensus       154 ~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g  222 (611)
T 1nr0_A          154 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG  222 (611)
T ss_dssp             EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence            9999986 6999999999999999988888899999999999999999999999999999999998765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.91  E-value=1.2e-22  Score=128.87  Aligned_cols=120  Identities=19%  Similarity=0.238  Sum_probs=102.6

Q ss_pred             CeeecCCCeEEEEECCCCc--ceeeecCCCCCeEEEEecCccc-------------------------ccccCCCCCeEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSR--PLQTFKPHTADVRSIHLDHYTT-------------------------EAGTRQGSPVSA   53 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~-------------------------~~~~~~~~~i~~   53 (125)
                      |++|+.|+.|++||+..+.  ++..+.+|..+|.++.|.+...                         .....|...|.+
T Consensus        76 l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~  155 (345)
T 3fm0_A           76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH  155 (345)
T ss_dssp             EEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEE
T ss_pred             EEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEE
Confidence            5899999999999987763  5677889999999999975221                         112356778999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCc--eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         54 LCVDPSGRLMVSGHEDSSCVLYDIRGSR--PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ++|+|++.++++++.|+.|++||..+++  ....+.+|...|.+++|+|++++|++++.|++|++|+..
T Consensus       156 ~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            9999999999999999999999998875  456788999999999999999999999999999999963

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.90  E-value=7.8e-23  Score=138.07  Aligned_cols=102  Identities=22%  Similarity=0.368  Sum_probs=94.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++|+.|++|++||..+++....+.+|.                    ..|.+++|+|+++++++++.|+.|++||..++
T Consensus       163 l~s~s~D~~v~lwd~~~~~~~~~l~~H~--------------------~~V~~v~fspdg~~las~s~D~~i~lwd~~~g  222 (611)
T 1nr0_A          163 IISGSDDNTVAIFEGPPFKFKSTFGEHT--------------------KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG  222 (611)
T ss_dssp             EEEEETTSCEEEEETTTBEEEEEECCCS--------------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEEeCCCeEEEEECCCCeEeeeecccc--------------------CceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence            5799999999999998888888888887                    78899999999999999999999999999999


Q ss_pred             ceeEEeC-------CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         81 RPLQTFK-------PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +....+.       +|.+.|.+++|+|++++|++++.|++|++||++++
T Consensus       223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~  271 (611)
T 1nr0_A          223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL  271 (611)
T ss_dssp             CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence            8888774       69999999999999999999999999999999865

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.90  E-value=1.5e-22  Score=128.97  Aligned_cols=99  Identities=13%  Similarity=0.207  Sum_probs=86.3

Q ss_pred             ecCCCeEEEEECCCCcc----------------eeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEe
Q psy14458          4 GHEDSSCVLYDIRGSRP----------------LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH   67 (125)
Q Consensus         4 ~~~d~~i~v~d~~~~~~----------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   67 (125)
                      |+.|+.|++||+.+++.                +..+.+|.                    ..|.+++|+|++.++++++
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~--------------------~~v~~~~~s~~g~~l~s~s  214 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT--------------------NPIKMVRLNRKSDMVATCS  214 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCS--------------------SCEEEEEECTTSSEEEEEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC--------------------CceEEEEECCCCCEEEEEe
Confidence            68899999999887651                34444444                    8899999999999999999


Q ss_pred             CCCc-EEEEEcCCCceeEEeC-C-CCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         68 EDSS-CVLYDIRGSRPLQTFK-P-HTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        68 ~~~~-i~~~d~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .|++ |++||+++++.+..+. + |...|.+++|+|+++++++++.|++|++||++..
T Consensus       215 ~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          215 QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            9998 9999999999999998 5 9999999999999999999999999999999764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.90  E-value=2.1e-22  Score=127.83  Aligned_cols=122  Identities=19%  Similarity=0.304  Sum_probs=101.9

Q ss_pred             CeeecCCCeEEEEECCCCccee---eecCCCCCeEEEEecCccc------------------------ccccCCCCCeEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQ---TFKPHTADVRSIHLDHYTT------------------------EAGTRQGSPVSA   53 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~------------------------~~~~~~~~~i~~   53 (125)
                      |++|+.|++|++||+..++...   ...+|...|+++.|++...                        .....|...|.+
T Consensus        31 las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~  110 (345)
T 3fm0_A           31 LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKS  110 (345)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEE
T ss_pred             EEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceE
Confidence            5899999999999998775432   2357899999999975221                        112357789999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCc---eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         54 LCVDPSGRLMVSGHEDSSCVLYDIRGSR---PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++|+|++++|++++.|+.|++||+.++.   .+..+..|...|.+++|+|++.++++++.|++|++||++++
T Consensus       111 v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~  182 (345)
T 3fm0_A          111 VAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED  182 (345)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETT
T ss_pred             EEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCC
Confidence            9999999999999999999999998753   45667789999999999999999999999999999998654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.90  E-value=2e-22  Score=126.35  Aligned_cols=123  Identities=18%  Similarity=0.216  Sum_probs=102.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeec-------------CCCCCeEEEEecCcc---------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFK-------------PHTADVRSIHLDHYT---------------------------   40 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~-------------~~~~~i~~~~~~~~~---------------------------   40 (125)
                      |++++.|+.|++||+++++.+..+.             .+...+.++.|.+..                           
T Consensus       127 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  206 (351)
T 3f3f_A          127 LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV  206 (351)
T ss_dssp             EEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred             EEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee
Confidence            5789999999999998876544332             466778888886530                           


Q ss_pred             cccccCCCCCeEEEEECCCC----CEEEEEeCCCcEEEEEcCCC------------------------------------
Q psy14458         41 TEAGTRQGSPVSALCVDPSG----RLMVSGHEDSSCVLYDIRGS------------------------------------   80 (125)
Q Consensus        41 ~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~i~~~d~~~~------------------------------------   80 (125)
                      ......|...|.+++|+|++    .++++++.||.|++||++.+                                    
T Consensus       207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (351)
T 3f3f_A          207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE  286 (351)
T ss_dssp             EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred             eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccce
Confidence            22233577899999999998    89999999999999999864                                    


Q ss_pred             ----------ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 ----------RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                                +.+..+..|...|.+++|+|++++|++++.|+.|++|++.++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          287 KAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             ----CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             eeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence                      5667778899999999999999999999999999999998754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.2e-22  Score=127.48  Aligned_cols=103  Identities=12%  Similarity=0.230  Sum_probs=90.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++++.|+.|++||+++++....+..+.                   ...+.+++|+|++.++++|+.||.|++||++++
T Consensus       142 l~s~s~dg~i~~wd~~~~~~~~~~~~~~-------------------~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~  202 (343)
T 3lrv_A          142 FIWADNRGTIGFQSYEDDSQYIVHSAKS-------------------DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP  202 (343)
T ss_dssp             EEEEETTCCEEEEESSSSCEEEEECCCS-------------------SCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred             EEEEeCCCcEEEEECCCCcEEEEEecCC-------------------CCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence            4789999999999999888866554332                   157899999999999999999999999999999


Q ss_pred             cee-EEeCC-CCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 RPL-QTFKP-HTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.+ ..+.. |...|.+++|+|++.++++++ |+.|++||+++..
T Consensus       203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~  246 (343)
T 3lrv_A          203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV  246 (343)
T ss_dssp             TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSST
T ss_pred             CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC
Confidence            877 77887 999999999999999999999 5599999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.90  E-value=1.1e-21  Score=122.58  Aligned_cols=122  Identities=27%  Similarity=0.446  Sum_probs=106.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc----------------------ccccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT----------------------EAGTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------~~~~~~~~~i~~~~~~~   58 (125)
                      |++++.|+.|++||+.+++.+..+.+|...|.++.|++...                      .....+...+.+++|+|
T Consensus        80 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  159 (312)
T 4ery_A           80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR  159 (312)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             EEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC
Confidence            57899999999999999999999999999999999875321                      11125667899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeC-CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++.++++++.|+.|++||+++++.+..+. .+...+..++|+|+++++++++.|+.|++||++++
T Consensus       160 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG  224 (312)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            99999999999999999999988877764 45678999999999999999999999999999865

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.90  E-value=3.2e-22  Score=126.31  Aligned_cols=121  Identities=17%  Similarity=0.247  Sum_probs=97.7

Q ss_pred             CeeecCCCeEEEEECCC-------CcceeeecCCCCCeEEEEecCccc--------------------------ccccCC
Q psy14458          1 MVSGHEDSSCVLYDIRG-------SRPLQTFKPHTADVRSIHLDHYTT--------------------------EAGTRQ   47 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~--------------------------~~~~~~   47 (125)
                      |++|+.|+.|++||+..       .+.+..+.+|..+|.++.|++...                          .....|
T Consensus        73 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h  152 (330)
T 2hes_X           73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH  152 (330)
T ss_dssp             EEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC
T ss_pred             EEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC
Confidence            57999999999999853       345667888999999999865211                          112356


Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC--ceeEEeCCCCCceeEEEEccC--CCeEEEeecCCeEEEEeCCC
Q psy14458         48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS--RPLQTFKPHTADVRSIRFSPS--AYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ...|.+++|+|++.+|++++.|+.|++||..++  +++..+.+|...|.+++|+|+  +..+++++.|++|++||+++
T Consensus       153 ~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          153 SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            788999999999999999999999999998876  577888999999999999998  67899999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.90  E-value=2.9e-22  Score=133.70  Aligned_cols=116  Identities=23%  Similarity=0.406  Sum_probs=101.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc---------------------ccccCCCCCeEEEEECCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT---------------------EAGTRQGSPVSALCVDPS   59 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~~~i~~~~~~~~   59 (125)
                      |++++.|+.|++||+ +++.+..+.+|..+|+++.|.+...                     .....|...|++++|+|+
T Consensus       441 l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~d  519 (577)
T 2ymu_A          441 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD  519 (577)
T ss_dssp             EEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTT
T ss_pred             EEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCC
Confidence            578999999999996 5677788888999999999875321                     112357789999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      +++|++++.|+.|++||. +++.+..+.+|...|.+++|+||+++|++++.|++|++||
T Consensus       520 g~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          520 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            999999999999999994 6788888999999999999999999999999999999997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.90  E-value=2e-22  Score=130.02  Aligned_cols=102  Identities=18%  Similarity=0.246  Sum_probs=95.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++|+.|+.|++||+.+++....+..|.                    ..|.+++|+|++.++++++.|+.|++||+.++
T Consensus       112 l~~~~~dg~i~iwd~~~~~~~~~~~~h~--------------------~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  171 (420)
T 3vl1_A          112 FILGTTEGDIKVLDSNFNLQREIDQAHV--------------------SEITKLKFFPSGEALISSSQDMQLKIWSVKDG  171 (420)
T ss_dssp             EEEEETTSCEEEECTTSCEEEEETTSSS--------------------SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEEECCCCEEEEeCCCcceeeeccccc--------------------CccEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence            5789999999999999888877777777                    78899999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +.+..+..|...|.+++|+|++.++++++.|+.|++||++++
T Consensus       172 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~  213 (420)
T 3vl1_A          172 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG  213 (420)
T ss_dssp             CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC
Confidence            999999999999999999999999999999999999999865

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.89  E-value=1.2e-21  Score=123.11  Aligned_cols=123  Identities=17%  Similarity=0.261  Sum_probs=99.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc---------------------cCCCCCeEEEEECCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG---------------------TRQGSPVSALCVDPS   59 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------------------~~~~~~i~~~~~~~~   59 (125)
                      +++++.|+.|++||+++++.+..+.+|..+|+++.|++......                     ......+.+++++|+
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  267 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPN  267 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSS
T ss_pred             EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCC
Confidence            36899999999999999999999999999999999976432111                     134467899999998


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeEEeC---------CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCC
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSRPLQTFK---------PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMR  124 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  124 (125)
                      +.++ +++.|+.|++||++++..+..+.         .|...|.+++|+|++++|++|+.|+.|++||+++|.+
T Consensus       268 ~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          268 RYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             SSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred             Ccee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence            7654 55679999999998876655443         5788999999999999999999999999999998864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.89  E-value=2.2e-21  Score=120.94  Aligned_cols=122  Identities=21%  Similarity=0.300  Sum_probs=99.0

Q ss_pred             CeeecCCCeEEEEECCCCcc----eeeecCCCCCeEEEEecCccc------------------------ccccCCCCCeE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRP----LQTFKPHTADVRSIHLDHYTT------------------------EAGTRQGSPVS   52 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~------------------------~~~~~~~~~i~   52 (125)
                      |++++.|+.|++||+++++.    ......+...|..+.+.+...                        .....+...+.
T Consensus       165 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~  244 (318)
T 4ggc_A          165 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC  244 (318)
T ss_dssp             EEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEE
T ss_pred             EEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeee
Confidence            57899999999999987653    233445677777777654221                        11123446788


Q ss_pred             EEEECCCCCEEEEEe--CCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         53 ALCVDPSGRLMVSGH--EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        53 ~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .++++|.+..+++++  .|+.|++||+.+++++..+.+|.+.|++++|+|++++|++|+.|++|++||+...
T Consensus       245 ~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          245 SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             eeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            999999998877654  8999999999999999999999999999999999999999999999999999754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.89  E-value=8.6e-22  Score=126.92  Aligned_cols=102  Identities=20%  Similarity=0.386  Sum_probs=92.5

Q ss_pred             CeeecCCCeEEEEECCCC-------cceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcE
Q psy14458          1 MVSGHEDSSCVLYDIRGS-------RPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSC   72 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i   72 (125)
                      |++|+.|+.|++||+.++       +++..+.+|.                    ..|.+++|+|++ .++++++.|+.|
T Consensus        97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~--------------------~~v~~~~~~p~~~~~l~s~~~dg~i  156 (402)
T 2aq5_A           97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT--------------------KRVGIVAWHPTAQNVLLSAGCDNVI  156 (402)
T ss_dssp             EEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS--------------------SCEEEEEECSSBTTEEEEEETTSCE
T ss_pred             EEEEeCCCeEEEEEccCCCCccccCCceEEecCCC--------------------CeEEEEEECcCCCCEEEEEcCCCEE
Confidence            589999999999999887       4455666666                    789999999998 799999999999


Q ss_pred             EEEEcCCCceeEEe--CCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         73 VLYDIRGSRPLQTF--KPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        73 ~~~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++||+.+++.+..+  ..|...|.+++|+|++.++++++.|+.|++||++++
T Consensus       157 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  208 (402)
T 2aq5_A          157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG  208 (402)
T ss_dssp             EEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred             EEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence            99999999999888  789999999999999999999999999999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.89  E-value=4.4e-22  Score=126.97  Aligned_cols=123  Identities=16%  Similarity=0.209  Sum_probs=97.2

Q ss_pred             CeeecCCCeEEEEECCCCc---ceeeecCCCCCeEEEEecCcc-------------------------cccccC-CCCCe
Q psy14458          1 MVSGHEDSSCVLYDIRGSR---PLQTFKPHTADVRSIHLDHYT-------------------------TEAGTR-QGSPV   51 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~-------------------------~~~~~~-~~~~i   51 (125)
                      |++++.|+.|++||+.+++   ....+..|..+|.++.|.+..                         ...... |...|
T Consensus        70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v  149 (377)
T 3dwl_C           70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTI  149 (377)
T ss_dssp             EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCE
T ss_pred             EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCe
Confidence            5799999999999999876   566777899999999986421                         111123 77899


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcC------------------CCceeEEeCCCCCceeEEEEccCCCeEEEeecCCe
Q psy14458         52 SALCVDPSGRLMVSGHEDSSCVLYDIR------------------GSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNK  113 (125)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~i~~~d~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~  113 (125)
                      .+++|+|++.++++++.|+.|++||+.                  .++.+..+ .|...|.+++|+|+++++++++.|+.
T Consensus       150 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~  228 (377)
T 3dwl_C          150 LSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS  228 (377)
T ss_dssp             EEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE
T ss_pred             EEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc
Confidence            999999999999999999999999985                  24455556 79999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy14458        114 LVLTDLQGTMR  124 (125)
Q Consensus       114 i~~~~~~~~~~  124 (125)
                      |++||++++..
T Consensus       229 i~iwd~~~~~~  239 (377)
T 3dwl_C          229 VTIAYPSAPEQ  239 (377)
T ss_dssp             EC-CEECSTTS
T ss_pred             EEEEECCCCCC
Confidence            99999987753

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.89  E-value=1.5e-21  Score=123.57  Aligned_cols=102  Identities=16%  Similarity=0.258  Sum_probs=94.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP-SGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |++|+.|+.|++||+.+++.+..+.+|.                    ..|.+++|+| ++.++++++.||.|++||+++
T Consensus        88 l~~~~~dg~i~v~d~~~~~~~~~~~~~~--------------------~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           88 LAVAGSRGIIRIINPITMQCIKHYVGHG--------------------NAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             EEEEETTCEEEEECTTTCCEEEEEESCC--------------------SCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             EEEecCCCEEEEEEchhceEeeeecCCC--------------------CcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            5789999999999999999888888777                    7889999999 889999999999999999999


Q ss_pred             CceeEEe---CCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         80 SRPLQTF---KPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++.+..+   ..|...|.+++|+|++.++++++.|+.|++||++++
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  193 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK  193 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC
Confidence            9988888   679999999999999999999999999999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.88  E-value=4.1e-21  Score=123.57  Aligned_cols=123  Identities=14%  Similarity=0.244  Sum_probs=106.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCC------CCCeEEEEecCccc---------------------------cccc-C
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPH------TADVRSIHLDHYTT---------------------------EAGT-R   46 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~---------------------------~~~~-~   46 (125)
                      |++++.|+.|++||+++++.+..+..+      ..+|.++.|++...                           .... .
T Consensus       181 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~  260 (416)
T 2pm9_A          181 FASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG  260 (416)
T ss_dssp             EEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC
T ss_pred             EEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC
Confidence            578999999999999999888887765      78899998865320                           0112 4


Q ss_pred             CCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCCCCC
Q psy14458         47 QGSPVSALCVDP-SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        47 ~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      |...+.+++|+| ++.++++++.|+.|++||+.+++.+..+..|...|.+++|+|++ .++++++.|+.|++||+++..
T Consensus       261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            667899999999 89999999999999999999999999999999999999999998 899999999999999998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.88  E-value=3.9e-22  Score=125.29  Aligned_cols=121  Identities=15%  Similarity=0.203  Sum_probs=99.9

Q ss_pred             CeeecCCCeEEEEECCCCc--ceeeecCCCCCeEEEEecCcc--c-------------------------ccccCCCCCe
Q psy14458          1 MVSGHEDSSCVLYDIRGSR--PLQTFKPHTADVRSIHLDHYT--T-------------------------EAGTRQGSPV   51 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~--~-------------------------~~~~~~~~~i   51 (125)
                      |++|+.|++|++||+++++  ....+.+|..+|+++.|++..  .                         .....|...+
T Consensus        74 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v  153 (316)
T 3bg1_A           74 LASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGC  153 (316)
T ss_dssp             EEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCB
T ss_pred             EEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCc
Confidence            5899999999999998764  456677899999999997641  0                         1112455678


Q ss_pred             EEEEECCC-----------------CCEEEEEeCCCcEEEEEcCCC---ceeEEeCCCCCceeEEEEccCC----CeEEE
Q psy14458         52 SALCVDPS-----------------GRLMVSGHEDSSCVLYDIRGS---RPLQTFKPHTADVRSIRFSPSA----YYLLT  107 (125)
Q Consensus        52 ~~~~~~~~-----------------~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~~----~~~~~  107 (125)
                      .+++|+|+                 +.++++|+.|+.|++||+...   +....+.+|...|.+++|+|++    .+|++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las  233 (316)
T 3bg1_A          154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS  233 (316)
T ss_dssp             CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE
T ss_pred             ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE
Confidence            89999997                 368999999999999999754   4566778999999999999986    88999


Q ss_pred             eecCCeEEEEeCCC
Q psy14458        108 GGYDNKLVLTDLQG  121 (125)
Q Consensus       108 ~~~d~~i~~~~~~~  121 (125)
                      ++.|++|++|++++
T Consensus       234 ~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          234 CSQDGRVFIWTCDD  247 (316)
T ss_dssp             EETTCEEEEEECSS
T ss_pred             EcCCCeEEEEEccC
Confidence            99999999999876

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.88  E-value=7.4e-21  Score=119.51  Aligned_cols=122  Identities=17%  Similarity=0.292  Sum_probs=101.7

Q ss_pred             CeeecCCCeEEEEECCCCc-----ceeeecCCCCCeEEEEecCcccc---------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSR-----PLQTFKPHTADVRSIHLDHYTTE---------------------------------   42 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~---------------------------------   42 (125)
                      |+||+.|++|++||+...+     +...+.+|..+|.++.|.+....                                 
T Consensus        54 l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~  133 (340)
T 4aow_A           54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS  133 (340)
T ss_dssp             EEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             EEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeE
Confidence            5799999999999997654     35567889999999988541110                                 


Q ss_pred             --------------------------------cccCCCCCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCCceeEEeCC
Q psy14458         43 --------------------------------AGTRQGSPVSALCVDPSG--RLMVSGHEDSSCVLYDIRGSRPLQTFKP   88 (125)
Q Consensus        43 --------------------------------~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~   88 (125)
                                                      ....+...+.++++++++  .++++++.|+.|++||+++++....+.+
T Consensus       134 ~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~  213 (340)
T 4aow_A          134 VAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG  213 (340)
T ss_dssp             EEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecC
Confidence                                            001345678899998864  5788999999999999999999999999


Q ss_pred             CCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         89 HTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        89 ~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      |.+.|.+++|+|+++++++++.|+.|++||+++.
T Consensus       214 h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence            9999999999999999999999999999999865

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.88  E-value=2e-21  Score=125.15  Aligned_cols=122  Identities=16%  Similarity=0.232  Sum_probs=104.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeee-------cCCCCCeEEEEecCccc--------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTF-------KPHTADVRSIHLDHYTT--------------------------------   41 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~--------------------------------   41 (125)
                      |++|+.|+.|++||+++++.+..+       .+|...|.++.|.+...                                
T Consensus       222 l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~  301 (393)
T 1erj_A          222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT  301 (393)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C
T ss_pred             EEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCc
Confidence            578999999999999988877665       46888999999864211                                


Q ss_pred             --ccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEcc------CCCeEEEeecCCe
Q psy14458         42 --EAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP------SAYYLLTGGYDNK  113 (125)
Q Consensus        42 --~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~d~~  113 (125)
                        .....|...|.+++++|++.++++|+.|+.|++||..+++.+..+.+|.+.|.+++|++      ++.++++|+.|++
T Consensus       302 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~  381 (393)
T 1erj_A          302 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK  381 (393)
T ss_dssp             EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             ceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence              11124667799999999999999999999999999999999999999999999999886      6889999999999


Q ss_pred             EEEEeCCCC
Q psy14458        114 LVLTDLQGT  122 (125)
Q Consensus       114 i~~~~~~~~  122 (125)
                      |++|+++..
T Consensus       382 i~iW~~~~~  390 (393)
T 1erj_A          382 ARIWKYKKI  390 (393)
T ss_dssp             EEEEEEEEC
T ss_pred             EEECccccc
Confidence            999998654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.88  E-value=2.2e-21  Score=125.84  Aligned_cols=99  Identities=21%  Similarity=0.318  Sum_probs=89.2

Q ss_pred             eecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEe--CCCcEEEEEcCCC
Q psy14458          3 SGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH--EDSSCVLYDIRGS   80 (125)
Q Consensus         3 t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~   80 (125)
                      +|+.|+.|++||+.++++...+..+                     ..+.++.|+|++..+++++  .|+.|++||+.++
T Consensus       296 ~gs~D~~I~iwd~~t~~~~~~~~~~---------------------~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~  354 (420)
T 4gga_A          296 GGTSDRHIRIWNVCSGACLSAVDAH---------------------SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  354 (420)
T ss_dssp             ECTTTCEEEEEETTTTEEEEEEECS---------------------SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             eecCCCEEEEEeCCccccceeeccc---------------------cceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence            4678999999999999988887754                     4688899999998887765  7899999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +++..+.+|.+.|.+++|+|+|++|++|+.|++|++||+...
T Consensus       355 ~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          355 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            999999999999999999999999999999999999998653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.88  E-value=2.3e-21  Score=120.85  Aligned_cols=102  Identities=20%  Similarity=0.409  Sum_probs=88.8

Q ss_pred             CeeecCCCeEEEEECCCC--cceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGS--RPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS--GRLMVSGHEDSSCVLYD   76 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~d   76 (125)
                      |++|+.|+.|++||+...  +.+..+.+|.                    ..|.+++|++.  +.+|++++.|+.|++||
T Consensus        24 las~s~D~~v~iw~~~~~~~~~~~~l~gH~--------------------~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B           24 MATCSSDKTIKIFEVEGETHKLIDTLTGHE--------------------GPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             EEEEETTSCEEEEEBCSSCBCCCEEECCCS--------------------SCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             EEEEeCCCEEEEEecCCCCcEEEEEEcccc--------------------CCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            589999999999999743  5667788887                    77889999763  78999999999999999


Q ss_pred             cCCCc--eeEEeCCCCCceeEEEEccC--CCeEEEeecCCeEEEEeCCCC
Q psy14458         77 IRGSR--PLQTFKPHTADVRSIRFSPS--AYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        77 ~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +.+++  .+..+..|...|.+++|+|+  +.++++++.|++|++||+++.
T Consensus        84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~  133 (297)
T 2pm7_B           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN  133 (297)
T ss_dssp             BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred             cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence            98763  56677889999999999997  889999999999999999765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.88  E-value=7.6e-21  Score=122.61  Aligned_cols=123  Identities=24%  Similarity=0.345  Sum_probs=106.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccc---------------------cccCCCCCeEEEEECCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTE---------------------AGTRQGSPVSALCVDPS   59 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------------------~~~~~~~~i~~~~~~~~   59 (125)
                      |++|+.|+.|++||+.+++.+..+.+|...|.++.|++....                     ....|...|.+++|+|+
T Consensus       149 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  228 (401)
T 4aez_A          149 LSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD  228 (401)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred             EEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC
Confidence            578999999999999999999999999999999998653221                     12356789999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCC-CeEEEee--cCCeEEEEeCCCCC
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSA-YYLLTGG--YDNKLVLTDLQGTM  123 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~d~~i~~~~~~~~~  123 (125)
                      +.++++++.|+.|++||+++++....+..|...|.+++|+|++ .++++++  .|+.|++||++++.
T Consensus       229 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~  295 (401)
T 4aez_A          229 GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA  295 (401)
T ss_dssp             SSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred             CCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence            9999999999999999999999999999999999999999976 4555554  69999999998763

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.88  E-value=1e-21  Score=123.32  Aligned_cols=102  Identities=19%  Similarity=0.361  Sum_probs=88.6

Q ss_pred             CeeecCCCeEEEEECCCCc--ceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSR--PLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP--SGRLMVSGHEDSSCVLYD   76 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~d   76 (125)
                      |++|+.|++|++||+.+++  .+..+.+|.                    ..|.+++|++  ++++|++++.|+.|++||
T Consensus        28 lasgs~D~~v~lwd~~~~~~~~~~~l~gH~--------------------~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A           28 LATCSSDRSVKIFDVRNGGQILIADLRGHE--------------------GPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             EEEEETTTEEEEEEEETTEEEEEEEEECCS--------------------SCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             EEEEeCCCeEEEEEecCCCcEEEEEEcCCC--------------------ccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            5899999999999998764  355677777                    7888999976  478999999999999999


Q ss_pred             cCCC--ceeEEeCCCCCceeEEEEccC--CCeEEEeecCCeEEEEeCCCC
Q psy14458         77 IRGS--RPLQTFKPHTADVRSIRFSPS--AYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        77 ~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++++  +....+..|...|.+++|+|+  +.++++++.|++|++||+++.
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            9886  456677889999999999997  789999999999999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=6.4e-21  Score=121.09  Aligned_cols=123  Identities=18%  Similarity=0.253  Sum_probs=104.4

Q ss_pred             CeeecCCCeEEEEECCCCc--ceeeecCCCCCeEEEEecCc--ccc------------------------cccCCCCCeE
Q psy14458          1 MVSGHEDSSCVLYDIRGSR--PLQTFKPHTADVRSIHLDHY--TTE------------------------AGTRQGSPVS   52 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~------------------------~~~~~~~~i~   52 (125)
                      |++++.|+.|++||+.+++  .+..+..|..+|.++.|.+.  ...                        ....+...+.
T Consensus        72 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~  151 (379)
T 3jrp_A           72 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN  151 (379)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEE
T ss_pred             EEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceE
Confidence            5799999999999999886  67777889999999999865  211                        1124567899


Q ss_pred             EEEECC-------------CCCEEEEEeCCCcEEEEEcCCCc----eeEEeCCCCCceeEEEEccC---CCeEEEeecCC
Q psy14458         53 ALCVDP-------------SGRLMVSGHEDSSCVLYDIRGSR----PLQTFKPHTADVRSIRFSPS---AYYLLTGGYDN  112 (125)
Q Consensus        53 ~~~~~~-------------~~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~d~  112 (125)
                      +++|+|             ++.++++++.|+.|++||+++++    ....+..|...|.+++|+|+   +.++++++.|+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg  231 (379)
T 3jrp_A          152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR  231 (379)
T ss_dssp             EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence            999999             68999999999999999998754    44567789999999999999   89999999999


Q ss_pred             eEEEEeCCCCC
Q psy14458        113 KLVLTDLQGTM  123 (125)
Q Consensus       113 ~i~~~~~~~~~  123 (125)
                      .|++||++++.
T Consensus       232 ~i~iwd~~~~~  242 (379)
T 3jrp_A          232 TCIIWTQDNEQ  242 (379)
T ss_dssp             CEEEEEESSTT
T ss_pred             EEEEEeCCCCC
Confidence            99999998753

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.88  E-value=5.5e-21  Score=127.58  Aligned_cols=118  Identities=24%  Similarity=0.416  Sum_probs=102.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc---------------------ccccCCCCCeEEEEECCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT---------------------EAGTRQGSPVSALCVDPS   59 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~~~i~~~~~~~~   59 (125)
                      |++++.|+.|++||. +++.+..+.+|..+|.++.|.+...                     .....|...+.+++|+|+
T Consensus       400 l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd  478 (577)
T 2ymu_A          400 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD  478 (577)
T ss_dssp             EEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTT
T ss_pred             EEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCC
Confidence            578999999999995 5777888888999999999865321                     112356788999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ++++++++.|+.|++|| .+++.+..+.+|...|++++|+|++++|++++.|+.|++||..
T Consensus       479 ~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          479 GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             SCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             CCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence            99999999999999999 4678888899999999999999999999999999999999964

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.88  E-value=1.9e-21  Score=132.84  Aligned_cols=101  Identities=24%  Similarity=0.383  Sum_probs=90.7

Q ss_pred             CeeecCCCeEEEEECCCCc-----ceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSR-----PLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLY   75 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~   75 (125)
                      |+||+.|++|++||+....     ....+.+|.                    ..|.+++|+|+++++++|+.|+.|++|
T Consensus       398 l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~--------------------~~v~~v~~s~~g~~l~sgs~Dg~v~vw  457 (694)
T 3dm0_A          398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS--------------------HFVEDVVLSSDGQFALSGSWDGELRLW  457 (694)
T ss_dssp             EEEEETTSEEEEEECCCSTTCSCEEEEEEECCS--------------------SCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             EEEEeCCCcEEEEEccCCCcccccccceecCCC--------------------CcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            5799999999999997643     234455666                    789999999999999999999999999


Q ss_pred             EcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         76 DIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        76 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      |+.+++....+..|...|.+++|+|+++++++++.|++|++||+..
T Consensus       458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~  503 (694)
T 3dm0_A          458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG  503 (694)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred             ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC
Confidence            9999999999999999999999999999999999999999999754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.88  E-value=5.9e-21  Score=122.29  Aligned_cols=122  Identities=17%  Similarity=0.266  Sum_probs=105.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecC---C---CCCeEEEEecCccc-------------------------ccccC---
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKP---H---TADVRSIHLDHYTT-------------------------EAGTR---   46 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~---~---~~~i~~~~~~~~~~-------------------------~~~~~---   46 (125)
                      |++++.|+.|++||+++++.+..+..   |   ..+|.++.|++...                         .....   
T Consensus       200 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~  279 (397)
T 1sq9_A          200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH  279 (397)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred             EEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcc
Confidence            57899999999999999999888888   8   89999999864211                         00113   


Q ss_pred             ----------CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC------CC---------------CCceeE
Q psy14458         47 ----------QGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK------PH---------------TADVRS   95 (125)
Q Consensus        47 ----------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~------~~---------------~~~v~~   95 (125)
                                +...+.+++|+|++.++++++.|+.|++||+.+++.+..+.      .|               ...|.+
T Consensus       280 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~  359 (397)
T 1sq9_A          280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD  359 (397)
T ss_dssp             ------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEE
T ss_pred             cccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeE
Confidence                      77889999999999999999999999999999999999888      77               899999


Q ss_pred             EEEccCC----------CeEEEeecCCeEEEEeCCCC
Q psy14458         96 IRFSPSA----------YYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        96 ~~~~~~~----------~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++|+|++          +++++++.|+.|++|+++++
T Consensus       360 ~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          360 VKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             EEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             EEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            9999998          79999999999999999875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.88  E-value=6.7e-21  Score=120.55  Aligned_cols=122  Identities=20%  Similarity=0.369  Sum_probs=104.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccccc-----------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGT-----------------------------------   45 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------------------------   45 (125)
                      |++++.|+.|++||+.+++.+..+. +..++.++.|.+.......                                   
T Consensus        89 l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~  167 (369)
T 3zwl_B           89 CVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH  167 (369)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceee
Confidence            5789999999999999999888887 7788999988753321111                                   


Q ss_pred             ---CCCC--CeEEEEECCCCCEEEEEeCCCcEEEEEcCC-CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         46 ---RQGS--PVSALCVDPSGRLMVSGHEDSSCVLYDIRG-SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        46 ---~~~~--~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                         .+..  .+.+++|+|+++++++++.+|.|++||+++ .+.+..+..|...|.+++|+|++.++++++.|+.|++||+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~  247 (369)
T 3zwl_B          168 KIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV  247 (369)
T ss_dssp             EEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence               1112  899999999999999999999999999998 7888888899999999999999999999999999999999


Q ss_pred             CCCC
Q psy14458        120 QGTM  123 (125)
Q Consensus       120 ~~~~  123 (125)
                      +++.
T Consensus       248 ~~~~  251 (369)
T 3zwl_B          248 STLQ  251 (369)
T ss_dssp             TTCC
T ss_pred             CCCc
Confidence            8753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.88  E-value=2.3e-22  Score=129.62  Aligned_cols=103  Identities=15%  Similarity=0.242  Sum_probs=88.3

Q ss_pred             CeeecCCCeEEEEECCCCcce-----eeecCCCCCeEEEEecCcccccccCCCCCeEEEEECC--------CCCEEEEEe
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPL-----QTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP--------SGRLMVSGH   67 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~   67 (125)
                      |++++.|++|++||++.+...     ..+.+|.                    ..|.+++|+|        ++++|++++
T Consensus       104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~--------------------~~v~~v~~~p~~~~~~~~d~~~las~s  163 (393)
T 4gq1_A          104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHH--------------------NFVNDIDIADVYSADNRLAEQVIASVG  163 (393)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECTTTSCS--------------------SCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCccceeeeecccCCCC--------------------CceEEEEEccccccccCCCCCEEEEEE
Confidence            578999999999999887543     2345666                    7778888876        678999999


Q ss_pred             CCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCCCCC
Q psy14458         68 EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        68 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .|++|++||++++.++..+..|...|.+++|+|++ .++++++.|++|++||++++.
T Consensus       164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~  220 (393)
T 4gq1_A          164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL  220 (393)
T ss_dssp             TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred             CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence            99999999999888877777799999999999987 589999999999999998764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.88  E-value=6.6e-21  Score=121.93  Aligned_cols=121  Identities=16%  Similarity=0.238  Sum_probs=102.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeec--CCCCCeEEEEecCc-c--cccc----------------------cCCCCCeEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFK--PHTADVRSIHLDHY-T--TEAG----------------------TRQGSPVSA   53 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~-~--~~~~----------------------~~~~~~i~~   53 (125)
                      |++|+.|+.|++||+.+++....+.  +|...|.++.|.+. .  ....                      ..+...+.+
T Consensus        89 l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~  168 (383)
T 3ei3_B           89 VAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCC  168 (383)
T ss_dssp             EEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEE
T ss_pred             EEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEE
Confidence            5899999999999999888776665  68999999999762 1  1111                      123367999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCC-eEEEeecCCeEEEEeCCCC
Q psy14458         54 LCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAY-YLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++|+|++.++++++.|+.|++||+ +++.+..+..|...|.+++|+|++. ++++++.|+.|++||+++.
T Consensus       169 ~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  237 (383)
T 3ei3_B          169 VDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI  237 (383)
T ss_dssp             EEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGC
T ss_pred             EEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCC
Confidence            999999999999999999999998 5777888889999999999999998 8999999999999999863

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.1e-21  Score=130.68  Aligned_cols=122  Identities=15%  Similarity=0.177  Sum_probs=101.1

Q ss_pred             CeeecCCCeEEEEECCCCc-ceeeecCCCCCeEEE--EecCcc--c-cccc--------------------CCC--CCeE
Q psy14458          1 MVSGHEDSSCVLYDIRGSR-PLQTFKPHTADVRSI--HLDHYT--T-EAGT--------------------RQG--SPVS   52 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~--~~~~~~--~-~~~~--------------------~~~--~~i~   52 (125)
                      |++|+.|++|++||++++. +...+.+|..+|+++  .+.+..  . ....                    .+.  ..+.
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~  359 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV  359 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred             EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence            5899999999999998764 455678899999999  455432  1 1111                    121  2478


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         53 ALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +++|+|++..+++++.|+.|++||++++..+..+.+|.+.|.+++|+|++.+|++|+.|++|++||+..+
T Consensus       360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             ceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence            8999999999999999999999999999888888889999999999999999999999999999997643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.88  E-value=1e-21  Score=125.30  Aligned_cols=120  Identities=16%  Similarity=0.194  Sum_probs=101.3

Q ss_pred             CeeecCCCeEEEEECCCC--cceeeecCCCCCeEEEEecCcc-------------------------cccccCCCCCeEE
Q psy14458          1 MVSGHEDSSCVLYDIRGS--RPLQTFKPHTADVRSIHLDHYT-------------------------TEAGTRQGSPVSA   53 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~~-------------------------~~~~~~~~~~i~~   53 (125)
                      |++|+.|+.|++||+.++  +.+..+.+|..+|.++.|.+..                         ......+...+.+
T Consensus        26 l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~  105 (377)
T 3dwl_C           26 FVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATF  105 (377)
T ss_dssp             EECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEE
T ss_pred             EEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEE
Confidence            578899999999999988  6778888999999999996521                         1122356788999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCc---eeEEeCC-CCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         54 LCVDPSGRLMVSGHEDSSCVLYDIRGSR---PLQTFKP-HTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ++|+|+++++++++.|+.|++||+.+++   ....+.. |...|.+++|+|+++++++++.|+.|++||++
T Consensus       106 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          106 VRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             EECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred             EEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence            9999999999999999999999998876   4667776 99999999999999999999999999999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.87  E-value=2.1e-20  Score=119.69  Aligned_cols=123  Identities=15%  Similarity=0.206  Sum_probs=103.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccc-c--c---------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTE-A--G---------------------------------   44 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~--~---------------------------------   44 (125)
                      +++++.|+.|++||+++++.+..+..|..+|.++.|.+.... .  .                                 
T Consensus       159 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  238 (408)
T 4a11_B          159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVE  238 (408)
T ss_dssp             EEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTT
T ss_pred             EEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeec
Confidence            478999999999999999999999999999999998764321 0  0                                 


Q ss_pred             ---cCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-----------------------------------------
Q psy14458         45 ---TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS-----------------------------------------   80 (125)
Q Consensus        45 ---~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----------------------------------------   80 (125)
                         ..+...|.+++|+|++.++++++.|+.|++||+.++                                         
T Consensus       239 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  318 (408)
T 4a11_B          239 SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAV  318 (408)
T ss_dssp             TSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEE
T ss_pred             cccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEE
Confidence               235678999999999999999999999999998753                                         


Q ss_pred             ------ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 ------RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                            +.+..+..|...|.+++|+|++.+|++++.|+.|++||+++..
T Consensus       319 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          319 YTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred             EECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence                  3455667799999999999999999999999999999998764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.87  E-value=2.5e-20  Score=120.23  Aligned_cols=124  Identities=15%  Similarity=0.211  Sum_probs=102.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc-------------------------cCCC-------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG-------------------------TRQG-------   48 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------------------------~~~~-------   48 (125)
                      |++++.|+.|++||+.+++.+..+.+|..+|.++.|++......                         ..+.       
T Consensus       154 l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~  233 (420)
T 3vl1_A          154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA  233 (420)
T ss_dssp             EEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEE
T ss_pred             EEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEE
Confidence            57999999999999999999999999999999999965321111                         0122       


Q ss_pred             --------------CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC-CCCCceeEEEEccCCC-eEEEeecCC
Q psy14458         49 --------------SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIRFSPSAY-YLLTGGYDN  112 (125)
Q Consensus        49 --------------~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~~~d~  112 (125)
                                    ..+.+++|+|+++++++++.||.|++||+++++....+. .|...|.+++|+|++. ++++++.|+
T Consensus       234 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg  313 (420)
T 3vl1_A          234 LFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG  313 (420)
T ss_dssp             EEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             EecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCC
Confidence                          334445568899999999999999999999988777665 5788999999999998 999999999


Q ss_pred             eEEEEeCCCCCC
Q psy14458        113 KLVLTDLQGTMR  124 (125)
Q Consensus       113 ~i~~~~~~~~~~  124 (125)
                      .|++||++++..
T Consensus       314 ~i~vwd~~~~~~  325 (420)
T 3vl1_A          314 MLAQWDLRSPEC  325 (420)
T ss_dssp             EEEEEETTCTTS
T ss_pred             eEEEEEcCCCcC
Confidence            999999988654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.87  E-value=2.6e-21  Score=126.02  Aligned_cols=122  Identities=16%  Similarity=0.266  Sum_probs=98.3

Q ss_pred             CeeecCCCeEEEEECCCCcce--eeecCCCCCeEEEEecCcc---cccc----------------------cCCCCCeEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPL--QTFKPHTADVRSIHLDHYT---TEAG----------------------TRQGSPVSA   53 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~---~~~~----------------------~~~~~~i~~   53 (125)
                      |++|+.||.|++||+.+++..  ..+.+|..+|+++.|++..   +...                      ......+.+
T Consensus       135 lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  214 (435)
T 4e54_B          135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCS  214 (435)
T ss_dssp             EEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCC
T ss_pred             EEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEE
Confidence            579999999999999877543  3456799999999997421   1111                      022345788


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCC-eEEEeecCCeEEEEeCCCCC
Q psy14458         54 LCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAY-YLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ++|+|++.++++|+.||.|++||++. +.+..+..|...|.+++|+|++. ++++++.|++|++||+++..
T Consensus       215 ~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~  284 (435)
T 4e54_B          215 LDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR  284 (435)
T ss_dssp             EEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred             EEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence            99999999999999999999999864 55667888999999999999875 67889999999999998653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.87  E-value=7.9e-21  Score=119.05  Aligned_cols=103  Identities=19%  Similarity=0.302  Sum_probs=90.0

Q ss_pred             CeeecCCCeEEEEECCCCc----ceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECC--CCCEEEEEeCCCcEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSR----PLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP--SGRLMVSGHEDSSCVL   74 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~   74 (125)
                      |++|+.|+.|++||+.++.    ....+.+|.                    ..|.+++|+|  ++.++++++.|+.|++
T Consensus        26 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--------------------~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A           26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHD--------------------SSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EEEEETTSEEEEEEECSSSCCEEEEEEEECCS--------------------SCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             EEEeeCCCeEEEEECCCCCCcceecceeccCC--------------------CcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            5899999999999998763    444556666                    7889999999  5899999999999999


Q ss_pred             EEcCCC---------ceeEEeCCCCCceeEEEEccC--CCeEEEeecCCeEEEEeCCCCC
Q psy14458         75 YDIRGS---------RPLQTFKPHTADVRSIRFSPS--AYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        75 ~d~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ||+.++         +.+..+..|...|.+++|+|+  +.++++++.|+.|++||++++.
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  145 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS  145 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence            999876         557778889999999999999  9999999999999999998654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.87  E-value=9.5e-21  Score=121.78  Aligned_cols=121  Identities=11%  Similarity=0.157  Sum_probs=106.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccc---------------------cccCCCCCeEEEEECCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTE---------------------AGTRQGSPVSALCVDPS   59 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------------------~~~~~~~~i~~~~~~~~   59 (125)
                      |++++.|+.|++||+++++....+..+..+|.++.|.+....                     ....+...+.+++|+|+
T Consensus       262 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~  341 (425)
T 1r5m_A          262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQD  341 (425)
T ss_dssp             EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTT
T ss_pred             EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCC
Confidence            578999999999999999999999889999999998764311                     11245678999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCc--------------------eeEEeCCCCC--ceeEEEEccCCCeEEEeecCCeEEEE
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSR--------------------PLQTFKPHTA--DVRSIRFSPSAYYLLTGGYDNKLVLT  117 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~--------------------~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~d~~i~~~  117 (125)
                      +.++++++.||.|++||+.+++                    .+..+..|..  .|.+++|+|++++|++++.|+.|++|
T Consensus       342 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  421 (425)
T 1r5m_A          342 GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVV  421 (425)
T ss_dssp             SSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEE
T ss_pred             CCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEE
Confidence            9999999999999999998877                    8888888876  99999999999999999999999999


Q ss_pred             eCCC
Q psy14458        118 DLQG  121 (125)
Q Consensus       118 ~~~~  121 (125)
                      ++++
T Consensus       422 ~~~g  425 (425)
T 1r5m_A          422 AIPG  425 (425)
T ss_dssp             ECCC
T ss_pred             eecC
Confidence            9864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.87  E-value=1.6e-20  Score=122.66  Aligned_cols=102  Identities=26%  Similarity=0.413  Sum_probs=94.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++|+.|+.|++||+.+++.+..+.+|.                    ..|.+++|+|++ .+++|+.||.|++||+.++
T Consensus       135 l~sgs~dg~i~vwd~~~~~~~~~~~~h~--------------------~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~  193 (464)
T 3v7d_B          135 VITGADDKMIRVYDSINKKFLLQLSGHD--------------------GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG  193 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCS--------------------SCEEEEEECSTT-EEEEEETTSCEEEEETTTT
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEeCCC--------------------cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC
Confidence            5899999999999999999999888888                    788899999887 8999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEc--cCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFS--PSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.+..+..|...|.+++|+  +++.++++++.|+.|++||+++..
T Consensus       194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~  238 (464)
T 3v7d_B          194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES  238 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCC
T ss_pred             cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCc
Confidence            9999999999999999998  478999999999999999998754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.86  E-value=1.2e-20  Score=121.75  Aligned_cols=123  Identities=24%  Similarity=0.303  Sum_probs=102.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcc--cccc----------------------cCCCCCeEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYT--TEAG----------------------TRQGSPVSALCV   56 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~----------------------~~~~~~i~~~~~   56 (125)
                      |++|+.|+.|++||+++++....+..|..+|.++.|++..  ....                      ..+...+.+++|
T Consensus       232 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~  311 (401)
T 4aez_A          232 LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIW  311 (401)
T ss_dssp             EEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred             EEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEE
Confidence            5789999999999999999988888899999999997632  1110                      134467999999


Q ss_pred             CCCCCEEEE--EeCCCcEEEEEcCCCceeE--EeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         57 DPSGRLMVS--GHEDSSCVLYDIRGSRPLQ--TFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        57 ~~~~~~~~~--~~~~~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +|++.++++  |+.+|.|++||+.+++...  .+..|...|.+++|+|++.++++++.|+.|++|++.++.
T Consensus       312 s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          312 SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             CSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             CCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            999999998  5589999999999865443  466899999999999999999999999999999998764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.86  E-value=6.3e-21  Score=133.64  Aligned_cols=112  Identities=15%  Similarity=0.233  Sum_probs=86.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |+||+.|++|++||+.++....      ..+..+...   ......|...|.+++|+|++.+|++|+.||+|++||+.++
T Consensus       450 laSgs~DgtVrlWd~~~g~~~~------~~~~~~~l~---~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~  520 (902)
T 2oaj_A          450 FITGHSNGSVRIYDASHGDIQD------NASFEVNLS---RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN  520 (902)
T ss_dssp             EEEEETTSEEEEEESSCCTTTT------TBCEEEEHH---HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred             EEEecCCCcEEEEECCCccccC------CceEEeech---hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence            5899999999999998874210      000000000   0001134478999999999999999999999999999765


Q ss_pred             c---------------------------------------------eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEE
Q psy14458         81 R---------------------------------------------PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLV  115 (125)
Q Consensus        81 ~---------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~  115 (125)
                      +                                             ++..+..|.+.|++++|+||| +|++|+.|++|+
T Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~  599 (902)
T 2oaj_A          521 QFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLM  599 (902)
T ss_dssp             CC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEE
T ss_pred             cccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEE
Confidence            2                                             356778899999999999999 999999999999


Q ss_pred             EEeCCCC
Q psy14458        116 LTDLQGT  122 (125)
Q Consensus       116 ~~~~~~~  122 (125)
                      +||+++.
T Consensus       600 lwd~~~~  606 (902)
T 2oaj_A          600 LIDRRGP  606 (902)
T ss_dssp             EEETTTT
T ss_pred             EEECCCC
Confidence            9998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.9e-20  Score=122.32  Aligned_cols=121  Identities=17%  Similarity=0.192  Sum_probs=103.3

Q ss_pred             eeecCCCeEEEEECC--CCcceeeec--CCCCCeEEEEecCccc--------------------------ccccCCCCCe
Q psy14458          2 VSGHEDSSCVLYDIR--GSRPLQTFK--PHTADVRSIHLDHYTT--------------------------EAGTRQGSPV   51 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~--~~~~~~~~~--~~~~~i~~~~~~~~~~--------------------------~~~~~~~~~i   51 (125)
                      ++++.|+.|++||+.  +++.+..+.  .+...|.++.|.+...                          .....|...|
T Consensus       119 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v  198 (450)
T 2vdu_B          119 ACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSML  198 (450)
T ss_dssp             EEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCE
T ss_pred             EEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCce
Confidence            789999999999998  788877775  4668889998864211                          0223466789


Q ss_pred             EEEEECCC---CCEEEEEeCCCcEEEEEcCCCceeEE-eCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         52 SALCVDPS---GRLMVSGHEDSSCVLYDIRGSRPLQT-FKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        52 ~~~~~~~~---~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+++|+|+   +.++++++.|+.|++||+.+++.+.. +.+|...|.+++|+ ++.++++++.|+.|++||++++.
T Consensus       199 ~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~  273 (450)
T 2vdu_B          199 TDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK  273 (450)
T ss_dssp             EEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC
T ss_pred             EEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc
Confidence            99999999   89999999999999999999888877 55899999999999 99999999999999999998764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.86  E-value=8.3e-20  Score=114.39  Aligned_cols=122  Identities=19%  Similarity=0.251  Sum_probs=105.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc---------------------cCCCCCeEEEEECCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG---------------------TRQGSPVSALCVDPS   59 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------------------~~~~~~i~~~~~~~~   59 (125)
                      |++++.|+.|++||+++++.+..+..|..++.++.|.+......                     ..+...+.+++|+|+
T Consensus       156 l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~  235 (337)
T 1gxr_A          156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT  235 (337)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTT
T ss_pred             EEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCC
Confidence            47899999999999999999999999999999999975321111                     134578999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.++++++.++.|++||+.+++.. .+..|...|.++.|+|+++++++++.|+.+++||++++.
T Consensus       236 ~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          236 GEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             SSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence            999999999999999999887754 566799999999999999999999999999999998764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.86  E-value=3.5e-20  Score=132.61  Aligned_cols=122  Identities=20%  Similarity=0.255  Sum_probs=108.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc----------------------ccccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT----------------------EAGTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------~~~~~~~~~i~~~~~~~   58 (125)
                      |++|+.|+.|++||+.+++.+..+.+|...|.++.|++...                      .....|...+.+++|+|
T Consensus       630 l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~  709 (1249)
T 3sfz_A          630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN  709 (1249)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred             EEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEec
Confidence            57899999999999999999999999999999999975321                      11125778899999999


Q ss_pred             --CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         59 --SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        59 --~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                        ++.++++++.|+.|++||+.+++....+.+|...|.+++|+|+++++++++.|+.|++||++++
T Consensus       710 ~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~  775 (1249)
T 3sfz_A          710 KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA  775 (1249)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGT
T ss_pred             CCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCC
Confidence              4568999999999999999999999999999999999999999999999999999999998764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.6e-20  Score=116.76  Aligned_cols=100  Identities=20%  Similarity=0.263  Sum_probs=87.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++++.|+.|++||+++++.+..+..|.                    ..+.+++|+|++ .+++++.||.|++||+.++
T Consensus       198 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------------~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          198 FISCSNDGLIKLVDMHTGDVLRTYEGHE--------------------SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCS--------------------SCEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred             EEEccCCCeEEEEECCchhhhhhhhcCC--------------------ceEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence            4677888888888888777777777666                    788999999998 6889999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +....+..|...|.+++|+|+++ +++++.|+.|++||++++
T Consensus       257 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          257 SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence            99999999999999999999998 667899999999999865

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.86  E-value=9.4e-21  Score=123.40  Aligned_cols=123  Identities=15%  Similarity=0.166  Sum_probs=93.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecC--CCCCeEEEEecC---------------------cccccccCCCCCeEEEEEC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKP--HTADVRSIHLDH---------------------YTTEAGTRQGSPVSALCVD   57 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~~~~~~---------------------~~~~~~~~~~~~i~~~~~~   57 (125)
                      |++|+.|++|++||++++........  +...+.++.|++                     ........|...|.+++|+
T Consensus       180 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~  259 (435)
T 4e54_B          180 FYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALN  259 (435)
T ss_dssp             EEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEEC
T ss_pred             EEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeec
Confidence            58999999999999986543322222  223344555432                     2223334677899999999


Q ss_pred             CCCC-EEEEEeCCCcEEEEEcCCCceeEE---eCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         58 PSGR-LMVSGHEDSSCVLYDIRGSRPLQT---FKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        58 ~~~~-~~~~~~~~~~i~~~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      |++. ++++++.|+.|++||+++.+....   ...|...|.+++|+|++.+|++++.|+.|++||++++.
T Consensus       260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~  329 (435)
T 4e54_B          260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD  329 (435)
T ss_dssp             TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred             CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence            9875 788999999999999988654332   34689999999999999999999999999999998753

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.86  E-value=9.7e-21  Score=126.82  Aligned_cols=100  Identities=17%  Similarity=0.339  Sum_probs=91.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecC-CCCCeEEEEecCcccccccCCCCCeEEEEECC----------CCCEEEEEeCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKP-HTADVRSIHLDHYTTEAGTRQGSPVSALCVDP----------SGRLMVSGHED   69 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~~   69 (125)
                      |++++.|+.|++||+.+++.+..+.+ |.                    ..|++++|+|          ++.++++++.|
T Consensus       503 l~~~~~dg~i~iw~~~~~~~~~~~~~~h~--------------------~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d  562 (615)
T 1pgu_A          503 IAAGDVMGKILLYDLQSREVKTSRWAFRT--------------------SKINAISWKPAEKGANEEEIEEDLVATGSLD  562 (615)
T ss_dssp             EEEEETTSCEEEEETTTTEEEECCSCCCS--------------------SCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred             EEEcCCCCeEEEeeCCCCcceeEeecCCC--------------------CceeEEEEcCccccccccccCCCEEEEEcCC
Confidence            57899999999999999998887776 66                    7889999999          99999999999


Q ss_pred             CcEEEEEcCCC-ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         70 SSCVLYDIRGS-RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        70 ~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      +.|++||+.++ +.+..+..|...|.+++|+|++. |++++.|+.|++|+++.
T Consensus       563 g~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          563 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             SCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             CcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            99999999987 78888999999999999999999 99999999999999875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.86  E-value=1.6e-20  Score=120.99  Aligned_cols=104  Identities=16%  Similarity=0.239  Sum_probs=93.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeee--cCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTF--KPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~   78 (125)
                      |++++.|+.|++||+.+++.+..+  ..|.                    ..|.+++|+|++.++++++.|+.|++||++
T Consensus       147 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------------------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  206 (402)
T 2aq5_A          147 LLSAGCDNVILVWDVGTGAAVLTLGPDVHP--------------------DTIYSVDWSRDGALICTSCRDKRVRVIEPR  206 (402)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECTTTCC--------------------SCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred             EEEEcCCCEEEEEECCCCCccEEEecCCCC--------------------CceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence            578999999999999999888888  5666                    788999999999999999999999999999


Q ss_pred             CCceeEEe-CCCCCc-eeEEEEccCCCeEEEe---ecCCeEEEEeCCCCCC
Q psy14458         79 GSRPLQTF-KPHTAD-VRSIRFSPSAYYLLTG---GYDNKLVLTDLQGTMR  124 (125)
Q Consensus        79 ~~~~~~~~-~~~~~~-v~~~~~~~~~~~~~~~---~~d~~i~~~~~~~~~~  124 (125)
                      +++.+..+ ..|.+. +.++.|+|++.++++|   +.|+.|++||+++...
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          207 KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred             CCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence            99998888 678765 8999999999999999   7999999999987643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.86  E-value=2.3e-20  Score=118.08  Aligned_cols=102  Identities=20%  Similarity=0.456  Sum_probs=89.6

Q ss_pred             CeeecCCCeEEEEECCC-Ccce-eeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRG-SRPL-QTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~   78 (125)
                      |++|+.|+.|++||+.+ +..+ ..+.+|.                    ..|.+++|+|+++++++++.||.|++||+.
T Consensus        57 l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~--------------------~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  116 (368)
T 3mmy_A           57 LIAGSWANDVRCWEVQDSGQTIPKAQQMHT--------------------GPVLDVCWSDDGSKVFTASCDKTAKMWDLS  116 (368)
T ss_dssp             EEEEETTSEEEEEEECTTSCEEEEEEEECS--------------------SCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEECCCCcEEEEEcCCCCceeEEEecccc--------------------CCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence            58999999999999987 4443 5566676                    788999999999999999999999999999


Q ss_pred             CCceeEEeCCCCCceeEEEE--ccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         79 GSRPLQTFKPHTADVRSIRF--SPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +++.... ..|...|.++.|  +|++.++++++.|+.|++||++++.
T Consensus       117 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A          117 SNQAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             TTEEEEE-EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred             CCCceee-ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence            9887764 459999999999  8899999999999999999998764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.86  E-value=4.5e-21  Score=124.49  Aligned_cols=103  Identities=17%  Similarity=0.314  Sum_probs=92.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecC--CCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKP--HTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~   78 (125)
                      |++|+.|+.|++||+++++.+..+..  |.                    ..|++++|+|++.++++|+.||.|++||++
T Consensus       185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~--------------------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  244 (437)
T 3gre_A          185 LVALTNLSRVIIFDIRTLERLQIIENSPRH--------------------GAVSSICIDEECCVLILGTTRGIIDIWDIR  244 (437)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCGGG--------------------CCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred             EEEEeCCCeEEEEeCCCCeeeEEEccCCCC--------------------CceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            57899999999999999999888876  55                    788999999999999999999999999999


Q ss_pred             CCceeEEeC-CCCCceeEEEEcc----CCCeEEEeecCCeEEEEeCCCCC
Q psy14458         79 GSRPLQTFK-PHTADVRSIRFSP----SAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        79 ~~~~~~~~~-~~~~~v~~~~~~~----~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +++.+..+. .|...|.+++|+|    ++.++++++.|+.|++||++++.
T Consensus       245 ~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  294 (437)
T 3gre_A          245 FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH  294 (437)
T ss_dssp             TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred             CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence            999988886 6888999996665    67899999999999999998653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.86  E-value=7.1e-20  Score=116.25  Aligned_cols=122  Identities=16%  Similarity=0.170  Sum_probs=101.9

Q ss_pred             CeeecCCCeEEEEECCCCcceee--ecCCCCCeEEEEecCccc--------------------------ccccCCCCCeE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQT--FKPHTADVRSIHLDHYTT--------------------------EAGTRQGSPVS   52 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~--------------------------~~~~~~~~~i~   52 (125)
                      |++++.|+.|++||+.+++....  +..+...|.++.|.+...                          .....+...+.
T Consensus        67 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~  146 (372)
T 1k8k_C           67 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  146 (372)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             EEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCee
Confidence            57899999999999988765433  356888999999864211                          11124567899


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcC------------------CCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeE
Q psy14458         53 ALCVDPSGRLMVSGHEDSSCVLYDIR------------------GSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKL  114 (125)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~i~~~d~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i  114 (125)
                      +++|+|++.++++++.|+.|++||++                  .++.+..+..|...|.+++|+|++.++++++.|+.|
T Consensus       147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  226 (372)
T 1k8k_C          147 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV  226 (372)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence            99999999999999999999999954                  567888888899999999999999999999999999


Q ss_pred             EEEeCCCC
Q psy14458        115 VLTDLQGT  122 (125)
Q Consensus       115 ~~~~~~~~  122 (125)
                      ++||++++
T Consensus       227 ~i~d~~~~  234 (372)
T 1k8k_C          227 CLADADKK  234 (372)
T ss_dssp             EEEEGGGT
T ss_pred             EEEECCCC
Confidence            99999765

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.86  E-value=1.7e-20  Score=120.12  Aligned_cols=121  Identities=17%  Similarity=0.300  Sum_probs=104.1

Q ss_pred             CeeecCCCeEEEEECCC------Cccee-----ee-------cCCCCCeEEEEecCcccccc------------------
Q psy14458          1 MVSGHEDSSCVLYDIRG------SRPLQ-----TF-------KPHTADVRSIHLDHYTTEAG------------------   44 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~------~~~~~-----~~-------~~~~~~i~~~~~~~~~~~~~------------------   44 (125)
                      |++++.|+.|++||+..      ++.+.     .+       ..+...|.++.|.+.. ...                  
T Consensus       141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~  219 (397)
T 1sq9_A          141 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP  219 (397)
T ss_dssp             EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE
T ss_pred             EEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce
Confidence            57899999999999998      66665     66       3478888898887543 111                  


Q ss_pred             ----cC---C---CCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeEEeCC-------------CCCceeEEEE
Q psy14458         45 ----TR---Q---GSPVSALCVDPSGRLMVSGHED---SSCVLYDIRGSRPLQTFKP-------------HTADVRSIRF   98 (125)
Q Consensus        45 ----~~---~---~~~i~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~-------------~~~~v~~~~~   98 (125)
                          ..   |   ...+.+++|+|++.++++++.|   +.|++||+++++.+..+..             |...|.+++|
T Consensus       220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  299 (397)
T 1sq9_A          220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF  299 (397)
T ss_dssp             EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred             eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEE
Confidence                13   5   7889999999999999999999   9999999999999999988             9999999999


Q ss_pred             ccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         99 SPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        99 ~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +|+++++++++.|+.|++||++++
T Consensus       300 ~~~~~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          300 NDSGETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTTT
T ss_pred             CCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999999999999999865

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.86  E-value=2.7e-20  Score=120.82  Aligned_cols=122  Identities=12%  Similarity=0.268  Sum_probs=99.2

Q ss_pred             CeeecCCCeEEEEECCCCc-----------ceeeecCCC------------CCeEEEEecCccc----c-----------
Q psy14458          1 MVSGHEDSSCVLYDIRGSR-----------PLQTFKPHT------------ADVRSIHLDHYTT----E-----------   42 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~-----------~~~~~~~~~------------~~i~~~~~~~~~~----~-----------   42 (125)
                      |++|+.|+.|++||+.+++           ....+.+|.            .+|.++.|.+...    .           
T Consensus        43 la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw  122 (447)
T 3dw8_B           43 LATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLW  122 (447)
T ss_dssp             EEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEE
T ss_pred             EEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEE
Confidence            5899999999999998776           466777887            8899999876420    0           


Q ss_pred             -------------------------------------------------cccCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q psy14458         43 -------------------------------------------------AGTRQGSPVSALCVDPSGRLMVSGHEDSSCV   73 (125)
Q Consensus        43 -------------------------------------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~   73 (125)
                                                                       ....|...|.+++|+|++++++++ .|+.|+
T Consensus       123 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~  201 (447)
T 3dw8_B          123 KISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRIN  201 (447)
T ss_dssp             EEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEE
T ss_pred             ecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEE
Confidence                                                             023477889999999999999999 799999


Q ss_pred             EEEcCC-CceeE-------EeCCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCCCCC
Q psy14458         74 LYDIRG-SRPLQ-------TFKPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        74 ~~d~~~-~~~~~-------~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +||+.+ ++.+.       .+..|...|.+++|+|++ .++++++.|+.|++||++++.
T Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          202 LWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             EEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             EEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence            999984 33443       245789999999999998 999999999999999998764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.86  E-value=3e-20  Score=128.15  Aligned_cols=123  Identities=15%  Similarity=0.223  Sum_probs=108.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc----------------------ccccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT----------------------EAGTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------~~~~~~~~~i~~~~~~~   58 (125)
                      |++++.|+.|++||+.+++.+..+..|..+|+++.|++...                      .....|...|.+++|+|
T Consensus        28 la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~  107 (814)
T 3mkq_A           28 VLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP  107 (814)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred             EEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeC
Confidence            57899999999999999999999999999999999975321                      11235778899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCC-ceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGS-RPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +++++++++.||.|++||+.++ .....+..|...|.+++|+| ++..+++++.|+.|++||++++.
T Consensus       108 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~  174 (814)
T 3mkq_A          108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST  174 (814)
T ss_dssp             SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS
T ss_pred             CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9999999999999999999886 66777888999999999999 88999999999999999997654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.86  E-value=5.1e-20  Score=119.83  Aligned_cols=123  Identities=21%  Similarity=0.323  Sum_probs=103.0

Q ss_pred             CeeecCCCeEEEEECCC----------CcceeeecCCCCCeEEEEecCccc-----------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRG----------SRPLQTFKPHTADVRSIHLDHYTT-----------------------------   41 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~~-----------------------------   41 (125)
                      |++++.|+.|++||+..          .+.+..+.+|..+|.++.|++...                             
T Consensus       144 lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  223 (430)
T 2xyi_A          144 IATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA  223 (430)
T ss_dssp             EEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEEC
T ss_pred             EEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceecc
Confidence            57899999999999986          566777888999999999865221                             


Q ss_pred             -ccccCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCC---ceeEEeCCCCCceeEEEEccCCC-eEEEeecCCeEE
Q psy14458         42 -EAGTRQGSPVSALCVDP-SGRLMVSGHEDSSCVLYDIRGS---RPLQTFKPHTADVRSIRFSPSAY-YLLTGGYDNKLV  115 (125)
Q Consensus        42 -~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~i~  115 (125)
                       .....|...|.+++|+| ++.++++++.++.|++||++++   +.+..+..|...|++++|+|++. ++++|+.|+.|+
T Consensus       224 ~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~  303 (430)
T 2xyi_A          224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA  303 (430)
T ss_dssp             SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEE
Confidence             11125667899999999 6789999999999999999986   56777878999999999999887 688999999999


Q ss_pred             EEeCCCCC
Q psy14458        116 LTDLQGTM  123 (125)
Q Consensus       116 ~~~~~~~~  123 (125)
                      +||+++..
T Consensus       304 vwd~~~~~  311 (430)
T 2xyi_A          304 LWDLRNLK  311 (430)
T ss_dssp             EEETTCTT
T ss_pred             EEeCCCCC
Confidence            99998743

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.3e-20  Score=125.59  Aligned_cols=123  Identities=8%  Similarity=0.066  Sum_probs=98.9

Q ss_pred             CeeecCCCeEEEEECCCCcc-----------eeeecCCCCCeEEEEecCccc----------------------ccccCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRP-----------LQTFKPHTADVRSIHLDHYTT----------------------EAGTRQ   47 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~----------------------~~~~~~   47 (125)
                      |++++.|++|++||+..++.           ...+.+|..+|+++.|++...                      .....|
T Consensus       228 LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H  307 (524)
T 2j04_B          228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVH  307 (524)
T ss_dssp             EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECS
T ss_pred             EEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecc
Confidence            57899999999999976642           235677889999999854211                      112357


Q ss_pred             CCCeEEE--EECCCC-CEEEEEeCCCcEEEEEcCCCceeEEeCCCCC--ceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         48 GSPVSAL--CVDPSG-RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTA--DVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        48 ~~~i~~~--~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ...|.++  +++|++ .+|++++.|++|++||+++++....+..|..  .|.+++|+|++..+++++.|++|++||++++
T Consensus       308 ~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~  387 (524)
T 2j04_B          308 DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA  387 (524)
T ss_dssp             SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT
T ss_pred             cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc
Confidence            7889999  567887 8999999999999999998877666655543  4789999999999999999999999999876


Q ss_pred             C
Q psy14458        123 M  123 (125)
Q Consensus       123 ~  123 (125)
                      .
T Consensus       388 ~  388 (524)
T 2j04_B          388 F  388 (524)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.85  E-value=4e-20  Score=118.30  Aligned_cols=102  Identities=21%  Similarity=0.336  Sum_probs=89.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGR-LMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~d~~~   79 (125)
                      |++|+.|+.|++||+ .++.+..+..|.                    ..|.+++|+|+++ ++++++.|+.|++||+++
T Consensus       178 l~~~~~d~~i~i~d~-~~~~~~~~~~h~--------------------~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          178 LATGDSTGRLLLLGL-DGHEIFKEKLHK--------------------AKVTHAEFNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             EEEEETTSEEEEEET-TSCEEEEEECSS--------------------SCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             EEEECCCCCEEEEEC-CCCEEEEeccCC--------------------CcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence            578999999999998 467777777777                    7889999999998 999999999999999987


Q ss_pred             ----CceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCCCC
Q psy14458         80 ----SRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGTMR  124 (125)
Q Consensus        80 ----~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~  124 (125)
                          ++.+..+ .|...|.+++|+| ++.++++++.|+.|++||++++..
T Consensus       237 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          237 IKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             CCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred             CCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence                5566656 5999999999999 999999999999999999987643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.85  E-value=9e-20  Score=114.23  Aligned_cols=102  Identities=23%  Similarity=0.381  Sum_probs=91.4

Q ss_pred             CeeecCCCeEEEEECCCCc--ceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRGSR--PLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~   78 (125)
                      |++++.|+.|++||+.+++  ....+..+.                    ..+.+++|+|+++++++++.++.|++||++
T Consensus       112 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------------------~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~  171 (337)
T 1gxr_A          112 LIVGGEASTLSIWDLAAPTPRIKAELTSSA--------------------PACYALAISPDSKVCFSCCSDGNIAVWDLH  171 (337)
T ss_dssp             EEEEESSSEEEEEECCCC--EEEEEEECSS--------------------SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEEcCCCcEEEEECCCCCcceeeecccCC--------------------CceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence            4789999999999998876  344555555                    678999999999999999999999999999


Q ss_pred             CCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         79 GSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +++.+..+..|...+.+++|+|+++++++++.|+.|++||++++
T Consensus       172 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  215 (337)
T 1gxr_A          172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG  215 (337)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC
Confidence            99999999999999999999999999999999999999999865

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.7e-19  Score=114.10  Aligned_cols=122  Identities=15%  Similarity=0.293  Sum_probs=106.1

Q ss_pred             CeeecCCCeEEEEECCC-CcceeeecCCCCCeEEEEecCcccccc---------------------cCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRG-SRPLQTFKPHTADVRSIHLDHYTTEAG---------------------TRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~---------------------~~~~~~i~~~~~~~   58 (125)
                      |++++.|+.|++||+++ .+....+..+..+|.++.|.+......                     ..+...+.+++|+|
T Consensus       190 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  269 (369)
T 3zwl_B          190 IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITP  269 (369)
T ss_dssp             EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECS
T ss_pred             EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecC
Confidence            47899999999999998 677888888999999999975332111                     13456789999999


Q ss_pred             CCCEEEEEeCCC--------------cEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         59 SGRLMVSGHEDS--------------SCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~~--------------~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++.++++++.++              .+++||..+++.+..+..|...|.+++|+|+++++++++.|+.|++|+++++
T Consensus       270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          270 LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence            999999999888              8999999999999999999999999999999999999999999999998753

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.85  E-value=1e-19  Score=121.93  Aligned_cols=123  Identities=19%  Similarity=0.232  Sum_probs=106.7

Q ss_pred             CeeecCCCeEEEEECCCC--------cceeeecCCCCCeEEEEecCcccc------------------------cccCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGS--------RPLQTFKPHTADVRSIHLDHYTTE------------------------AGTRQG   48 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~------------------------~~~~~~   48 (125)
                      |++++.|+.|++||+.++        +....+..+..+|.++.|.+....                        ....|.
T Consensus        81 l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  160 (615)
T 1pgu_A           81 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS  160 (615)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred             EEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCC
Confidence            578999999999999754        566677888999999999764321                        123567


Q ss_pred             CCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeEEeCCCCC---ceeEEEEccC-CCeEEEeecCCeEEEEeCCCCC
Q psy14458         49 SPVSALCVDPSGR-LMVSGHEDSSCVLYDIRGSRPLQTFKPHTA---DVRSIRFSPS-AYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        49 ~~i~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..|.+++|+|+++ .+++++.|+.|++||..+++.+..+..|..   .|.+++|+|+ ++++++++.|+.|++||++++.
T Consensus       161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  240 (615)
T 1pgu_A          161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE  240 (615)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred             ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            8899999999997 899999999999999999999999999998   9999999999 9999999999999999998653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.85  E-value=8e-20  Score=119.42  Aligned_cols=101  Identities=22%  Similarity=0.317  Sum_probs=93.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++|+.|+.|++||+.+++++..+.+|.                    ..+.+++|+|+++++++++.|+.|++||+.++
T Consensus       283 l~~~~~d~~i~vwd~~~~~~~~~~~~~~--------------------~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          283 VVSGSYDNTLIVWDVAQMKCLYILSGHT--------------------DRIYSTIYDHERKRCISASMDTTIRIWDLENG  342 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCS--------------------SCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCC--------------------CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence            5789999999999999999988888777                    78899999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.+..+..|...|.++.|+  +.++++++.|+.|++||+++..
T Consensus       343 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~  383 (464)
T 3v7d_B          343 ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS  383 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred             cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc
Confidence            9999999999999999996  5799999999999999998753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.7e-20  Score=117.58  Aligned_cols=102  Identities=18%  Similarity=0.379  Sum_probs=90.8

Q ss_pred             CeeecCCCeEEEEECC--CCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIR--GSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS--GRLMVSGHEDSSCVLYD   76 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~d   76 (125)
                      |++|+.|+.|++||+.  +++.+..+.+|.                    ..|.+++|+++  +.++++++.||.|++||
T Consensus        26 l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~--------------------~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   85 (379)
T 3jrp_A           26 LATCSSDKTIKIFEVEGETHKLIDTLTGHE--------------------GPVWRVDWAHPKFGTILASCSYDGKVLIWK   85 (379)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCS--------------------SCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             EEEEECCCcEEEEecCCCcceeeeEecCCC--------------------CcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence            5789999999999997  445666777777                    78889999877  89999999999999999


Q ss_pred             cCCCc--eeEEeCCCCCceeEEEEccC--CCeEEEeecCCeEEEEeCCCC
Q psy14458         77 IRGSR--PLQTFKPHTADVRSIRFSPS--AYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        77 ~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +.+++  ....+..|...|.+++|+|+  +.++++++.|+.|++||+++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           86 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred             cCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence            99986  67778889999999999998  999999999999999999876

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=7.1e-20  Score=128.38  Aligned_cols=120  Identities=18%  Similarity=0.175  Sum_probs=100.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc---------------------------------ccccCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT---------------------------------EAGTRQ   47 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------------------~~~~~~   47 (125)
                      |++++.|++|++||+.+++++..+. +...|+++.|++...                                 .....|
T Consensus        72 L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h  150 (902)
T 2oaj_A           72 LVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR  150 (902)
T ss_dssp             EEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred             EEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC
Confidence            5789999999999999998888776 667899888864211                                 112346


Q ss_pred             CCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeEEeCCC------------------CCceeEEEEccCCCeEEEe
Q psy14458         48 GSPVSALCVDPS-GRLMVSGHEDSSCVLYDIRGSRPLQTFKPH------------------TADVRSIRFSPSAYYLLTG  108 (125)
Q Consensus        48 ~~~i~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~~~  108 (125)
                      ...|.+++|+|+ +..+++|+.|+.| +||+++++.+..+..|                  ...|.+++|+|+|.+|+++
T Consensus       151 ~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg  229 (902)
T 2oaj_A          151 LSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI  229 (902)
T ss_dssp             CCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred             CCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE
Confidence            678999999996 4789999999999 9999999888877755                  4679999999999999999


Q ss_pred             ecCCeEEEEeCCCC
Q psy14458        109 GYDNKLVLTDLQGT  122 (125)
Q Consensus       109 ~~d~~i~~~~~~~~  122 (125)
                      +.|++|++||++++
T Consensus       230 s~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          230 HEDNSLVFWDANSG  243 (902)
T ss_dssp             ETTCCEEEEETTTC
T ss_pred             ECCCeEEEEECCCC
Confidence            99999999999765

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.85  E-value=1.6e-19  Score=114.63  Aligned_cols=120  Identities=14%  Similarity=0.225  Sum_probs=101.5

Q ss_pred             CeeecCCCeEEEEECCCCc--ceeeecCCCCCeEEEEecCccc------------------------ccccCCCCCeEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSR--PLQTFKPHTADVRSIHLDHYTT------------------------EAGTRQGSPVSAL   54 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~------------------------~~~~~~~~~i~~~   54 (125)
                      |++++.|+.|++||+.+++  .+..+.+|..+|.++.|.+...                        .....+...+.++
T Consensus        23 l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  102 (372)
T 1k8k_C           23 IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV  102 (372)
T ss_dssp             EEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEE
T ss_pred             EEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEE
Confidence            4788899999999999887  7888889999999999864221                        1113466789999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEcCCCce---eEEe-CCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         55 CVDPSGRLMVSGHEDSSCVLYDIRGSRP---LQTF-KPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        55 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      +|+|+++++++++.++.|++||+..++.   ...+ ..|...|.+++|+|++.++++++.|+.+++||++
T Consensus       103 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (372)
T 1k8k_C          103 RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  172 (372)
T ss_dssp             EECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             EECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcc
Confidence            9999999999999999999999988763   3333 5788999999999999999999999999999975

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.85  E-value=7.7e-20  Score=126.11  Aligned_cols=122  Identities=18%  Similarity=0.254  Sum_probs=104.6

Q ss_pred             CeeecCCCeEEEEECCCCc--ceeeecCCCCCeEEEEecCc--ccc------------------------cccCCCCCeE
Q psy14458          1 MVSGHEDSSCVLYDIRGSR--PLQTFKPHTADVRSIHLDHY--TTE------------------------AGTRQGSPVS   52 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~------------------------~~~~~~~~i~   52 (125)
                      |++|+.|+.|++||+.+++  ....+..|..+|.++.|++.  ...                        ....+...+.
T Consensus        70 l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~  149 (753)
T 3jro_A           70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN  149 (753)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEE
T ss_pred             EEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceE
Confidence            5799999999999999886  66777889999999999864  211                        1124567899


Q ss_pred             EEEECC-------------CCCEEEEEeCCCcEEEEEcCCC----ceeEEeCCCCCceeEEEEccC---CCeEEEeecCC
Q psy14458         53 ALCVDP-------------SGRLMVSGHEDSSCVLYDIRGS----RPLQTFKPHTADVRSIRFSPS---AYYLLTGGYDN  112 (125)
Q Consensus        53 ~~~~~~-------------~~~~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~d~  112 (125)
                      +++|+|             ++.++++|+.||.|++||++++    .....+..|...|.+++|+|+   +.++++++.|+
T Consensus       150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg  229 (753)
T 3jro_A          150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR  229 (753)
T ss_dssp             EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred             EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence            999999             4899999999999999999876    456677889999999999999   89999999999


Q ss_pred             eEEEEeCCCC
Q psy14458        113 KLVLTDLQGT  122 (125)
Q Consensus       113 ~i~~~~~~~~  122 (125)
                      .|++||++++
T Consensus       230 ~I~iwd~~~~  239 (753)
T 3jro_A          230 TCIIWTQDNE  239 (753)
T ss_dssp             CEEEEEESSS
T ss_pred             EEEEecCCCC
Confidence            9999999875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.84  E-value=2.1e-19  Score=116.92  Aligned_cols=121  Identities=18%  Similarity=0.305  Sum_probs=101.8

Q ss_pred             CeeecCCCeEEEEECCCC---cceeeecCCCCCeEEEEecCcccc------------------------cccCCCCCeEE
Q psy14458          1 MVSGHEDSSCVLYDIRGS---RPLQTFKPHTADVRSIHLDHYTTE------------------------AGTRQGSPVSA   53 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~------------------------~~~~~~~~i~~   53 (125)
                      |++++.|+.|++||++++   +.+..+..|..+|+++.|++....                        ....|...|.+
T Consensus       247 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~  326 (430)
T 2xyi_A          247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ  326 (430)
T ss_dssp             EEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEE
T ss_pred             EEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEE
Confidence            478999999999999987   567777789999999999763221                        11246788999


Q ss_pred             EEECCCC-CEEEEEeCCCcEEEEEcCC--------------CceeEEeCCCCCceeEEEEccCCC-eEEEeecCCeEEEE
Q psy14458         54 LCVDPSG-RLMVSGHEDSSCVLYDIRG--------------SRPLQTFKPHTADVRSIRFSPSAY-YLLTGGYDNKLVLT  117 (125)
Q Consensus        54 ~~~~~~~-~~~~~~~~~~~i~~~d~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~i~~~  117 (125)
                      ++|+|++ .++++++.|+.|++||+..              .+.+..+.+|...|.+++|+|++. ++++++.|+.|++|
T Consensus       327 i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  406 (430)
T 2xyi_A          327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW  406 (430)
T ss_dssp             EEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred             EEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence            9999998 4799999999999999986              356777778999999999999998 89999999999999


Q ss_pred             eCCC
Q psy14458        118 DLQG  121 (125)
Q Consensus       118 ~~~~  121 (125)
                      ++..
T Consensus       407 ~~~~  410 (430)
T 2xyi_A          407 QMAE  410 (430)
T ss_dssp             EECH
T ss_pred             Eccc
Confidence            9864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.5e-19  Score=114.48  Aligned_cols=113  Identities=9%  Similarity=0.036  Sum_probs=84.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCC-eEEEEecCcccccccCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEc
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTAD-VRSIHLDHYTTEAGTRQGSPVSALCVDP--SGRLMVSGHEDSSCVLYDI   77 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~d~   77 (125)
                      +++++.|++|++|+......+..+  .... +...         ...+...|.+++++|  +++++++++.|+.|++||+
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~--~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~  156 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDS--KTNKVLREI---------EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY  156 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEET--TTCCEEEEE---------ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred             eEEecCCCeEEEEEccCceEEeec--CCcceeEEe---------ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence            478999999999987642211111  1111 1110         012236799999999  9999999999999999999


Q ss_pred             CCCceeEEeC-CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCC
Q psy14458         78 RGSRPLQTFK-PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMR  124 (125)
Q Consensus        78 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  124 (125)
                      ++++...... .+...+.+++|+|++.++++|+.|+.|++||++++..
T Consensus       157 ~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~  204 (343)
T 3lrv_A          157 EDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ  204 (343)
T ss_dssp             SSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS
T ss_pred             CCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC
Confidence            9988876664 4556899999999999999999999999999987653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.84  E-value=6.5e-20  Score=115.78  Aligned_cols=122  Identities=22%  Similarity=0.347  Sum_probs=97.6

Q ss_pred             CeeecCCCeEEEEECCCCc-ceeeecCCCC----CeEEEEe----cCcc---------------------cccccCCCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSR-PLQTFKPHTA----DVRSIHL----DHYT---------------------TEAGTRQGSP   50 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~-~~~~~~~~~~----~i~~~~~----~~~~---------------------~~~~~~~~~~   50 (125)
                      |++++.|+.|++||+..++ .+..+..+..    .+.++.+    ++..                     ......+...
T Consensus       132 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  211 (357)
T 3i2n_A          132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNG  211 (357)
T ss_dssp             EEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSC
T ss_pred             EEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCc
Confidence            5789999999999999886 6666655443    7777773    2211                     1111246688


Q ss_pred             eEEEEECC---CCCEEEEEeCCCcEEEEEcCCCceeEEeC-----CCCCceeEEEEccCCC-eEEEeecCCeEEEEeCCC
Q psy14458         51 VSALCVDP---SGRLMVSGHEDSSCVLYDIRGSRPLQTFK-----PHTADVRSIRFSPSAY-YLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        51 i~~~~~~~---~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-~~~~~~~d~~i~~~~~~~  121 (125)
                      +.+++|+|   ++.++++++.||.|++||+++++....+.     .|...|.+++|+|++. ++++++.|+.|++||++.
T Consensus       212 v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          212 VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence            99999999   89999999999999999998866554443     8999999999999998 899999999999999875


Q ss_pred             C
Q psy14458        122 T  122 (125)
Q Consensus       122 ~  122 (125)
                      .
T Consensus       292 ~  292 (357)
T 3i2n_A          292 P  292 (357)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.7e-19  Score=114.97  Aligned_cols=121  Identities=12%  Similarity=0.123  Sum_probs=106.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc----------------------ccccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT----------------------EAGTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------~~~~~~~~~i~~~~~~~   58 (125)
                      +++++.|+.|++||+.+++.+..+..|..+|.++.|.+...                      .....+...+.+++|+|
T Consensus       220 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  299 (425)
T 1r5m_A          220 FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG  299 (425)
T ss_dssp             EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEET
T ss_pred             EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECC
Confidence            47889999999999999999888989999999999865321                      11124678899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++ ++++++.|+.|++||+.+++.+..+..|...|.+++|+|+++++++++.|+.|++||+++.
T Consensus       300 ~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~  362 (425)
T 1r5m_A          300 DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKL  362 (425)
T ss_dssp             TT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred             CC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            99 9999999999999999999999999999999999999999999999999999999998753

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.84  E-value=2e-20  Score=118.06  Aligned_cols=103  Identities=19%  Similarity=0.279  Sum_probs=87.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeec-----CCCCCeEEEEecCcccccccCCCCCeEEEEECCCCC-EEEEEeCCCcEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFK-----PHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGR-LMVSGHEDSSCVL   74 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~   74 (125)
                      |++++.|+.|++||+++++....+.     .|.                    ..|.+++|+|++. ++++++.||.|++
T Consensus       227 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--------------------~~v~~~~~~~~~~~~l~~~~~dg~i~i  286 (357)
T 3i2n_A          227 LVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK--------------------STVWQVRHLPQNRELFLTAGGAGGLHL  286 (357)
T ss_dssp             EEEEESTTEEEEEEEEEEETTTEEEEEEEECCS--------------------SCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred             EEEECCCCeEEEEeCcCCCcccceeeeccCCCc--------------------CCEEEEEECCCCCcEEEEEeCCCcEEE
Confidence            5789999999999998876655543     455                    7889999999988 8999999999999


Q ss_pred             EEcCCC-------------------ceeEEeCCCCCceeEEEEccCCCeEE-EeecCCeEEEEeCCCCC
Q psy14458         75 YDIRGS-------------------RPLQTFKPHTADVRSIRFSPSAYYLL-TGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        75 ~d~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~  123 (125)
                      ||++.+                   +.+..+..|...|.+++|+|++++++ +++.|+.|++||+.+..
T Consensus       287 wd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          287 WKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             eecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            999753                   35667778999999999999999998 89999999999998754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.84  E-value=3.1e-19  Score=116.17  Aligned_cols=118  Identities=16%  Similarity=0.319  Sum_probs=88.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc-----------------------ccccCCCCCeEEEEEC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT-----------------------EAGTRQGSPVSALCVD   57 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------------------~~~~~~~~~i~~~~~~   57 (125)
                      |++|+.|+.|++||+.+++.+..+.+|...|.++.|++...                       .....+...+.++++ 
T Consensus       186 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-  264 (435)
T 1p22_A          186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-  264 (435)
T ss_dssp             EEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence            46778888888888877777777777777777777654211                       112245567777777 


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         58 PSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        58 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                       +++++++++.||.|++||+++++.+..+..|...|.++.+  ++.++++|+.|+.|++||++++
T Consensus       265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~  326 (435)
T 1p22_A          265 -DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG  326 (435)
T ss_dssp             -ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred             -CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC
Confidence             6678888888888888888888888888888888888877  4668888888888888888765

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.84  E-value=2e-20  Score=118.30  Aligned_cols=114  Identities=14%  Similarity=0.147  Sum_probs=85.9

Q ss_pred             CeeecCCCeEEEEECCCCcce-eeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEEc
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPL-QTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS--GRLMVSGHEDSSCVLYDI   77 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~d~   77 (125)
                      |++++.|+.|++||+.++... ..+..+...+..+.       ....+...+.+++|+|+  +.++++++.||.|++||+
T Consensus       244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~  316 (366)
T 3k26_A          244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG-------RFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL  316 (366)
T ss_dssp             EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE-------EEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred             EEEEecCCEEEEEeCCCccccccccccCCcchheec-------cccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence            578999999999999876542 22222222211111       11123367889999999  999999999999999999


Q ss_pred             CCCc----eeEEeCCC--CCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         78 RGSR----PLQTFKPH--TADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        78 ~~~~----~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      .+++    ....+..|  ...|.+++|+|++++|++++.|+.|++||+.+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          317 EVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            9875    34467766  78999999999999999999999999999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.84  E-value=9.2e-20  Score=114.68  Aligned_cols=122  Identities=16%  Similarity=0.158  Sum_probs=101.3

Q ss_pred             CeeecCCCeEEEEECCC---------CcceeeecCCCCCeEEEEecCcccc-----------------------cccCCC
Q psy14458          1 MVSGHEDSSCVLYDIRG---------SRPLQTFKPHTADVRSIHLDHYTTE-----------------------AGTRQG   48 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~-----------------------~~~~~~   48 (125)
                      |++++.|+.|++||+++         ++++..+. +...+.++.|.+....                       ....+.
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  193 (342)
T 1yfq_A          115 LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK  193 (342)
T ss_dssp             EEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCS
T ss_pred             EEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCC
Confidence            57899999999999987         76666666 7788888887643211                       112445


Q ss_pred             CCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCC------ceeEEeCCCCC---------ceeEEEEccCCCeEEEeecCC
Q psy14458         49 SPVSALCVDP-SGRLMVSGHEDSSCVLYDIRGS------RPLQTFKPHTA---------DVRSIRFSPSAYYLLTGGYDN  112 (125)
Q Consensus        49 ~~i~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~d~  112 (125)
                      ..+.+++|+| ++.++++++.+|.+++|++...      +....+..|..         .|.+++|+|++++|++++.|+
T Consensus       194 ~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  273 (342)
T 1yfq_A          194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG  273 (342)
T ss_dssp             SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred             CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc
Confidence            6899999999 9999999999999999999876      77777887765         899999999999999999999


Q ss_pred             eEEEEeCCCCC
Q psy14458        113 KLVLTDLQGTM  123 (125)
Q Consensus       113 ~i~~~~~~~~~  123 (125)
                      .|++||++++.
T Consensus       274 ~i~vwd~~~~~  284 (342)
T 1yfq_A          274 IISCWNLQTRK  284 (342)
T ss_dssp             CEEEEETTTTE
T ss_pred             eEEEEcCccHh
Confidence            99999998653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.83  E-value=7.9e-20  Score=118.95  Aligned_cols=119  Identities=15%  Similarity=0.274  Sum_probs=98.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccc--------------------cccCCCCCeEEEEECCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTE--------------------AGTRQGSPVSALCVDPSG   60 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------------~~~~~~~~i~~~~~~~~~   60 (125)
                      |++|+.|+.|++||+++++.+..+.+|...|.++.+++....                    ....|...+.++++  ++
T Consensus       269 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~  346 (435)
T 1p22_A          269 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DN  346 (435)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CS
T ss_pred             EEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cC
Confidence            578999999999999999999999999999999988642221                    12356778999988  68


Q ss_pred             CEEEEEeCCCcEEEEEcCCCc---------eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         61 RLMVSGHEDSSCVLYDIRGSR---------PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        61 ~~~~~~~~~~~i~~~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .++++|+.||.|++||+.+++         .+..+..|.+.|.+++|  ++.++++++.|+.|++||+.+..
T Consensus       347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred             CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence            899999999999999997655         78888899999999999  78899999999999999997654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.83  E-value=3.6e-19  Score=115.46  Aligned_cols=102  Identities=20%  Similarity=0.342  Sum_probs=88.4

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      ++.+.|++|++||+.+++....+..+.                  +...|++++|+|+++++++|+.||.|++||+.+++
T Consensus       119 lAvgld~tV~lWd~~tg~~~~~~~~~~------------------~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~  180 (420)
T 4gga_A          119 LAVALDNSVYLWSASSGDILQLLQMEQ------------------PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK  180 (420)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEEECCS------------------TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             EEEEeCCEEEEEECCCCCEEEEEEecC------------------CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence            344569999999999998877665432                  22689999999999999999999999999999999


Q ss_pred             eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         82 PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+..+..|...+.++.+  ++.++++|+.|+.+.+||.+...
T Consensus       181 ~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~  220 (420)
T 4gga_A          181 RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE  220 (420)
T ss_dssp             EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS
T ss_pred             EEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccc
Confidence            99999999999998877  56799999999999999987643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.83  E-value=5.7e-19  Score=115.06  Aligned_cols=117  Identities=24%  Similarity=0.351  Sum_probs=67.9

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccc--------------------ccCCCCCeEEEEECCCCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEA--------------------GTRQGSPVSALCVDPSGR   61 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------------------~~~~~~~i~~~~~~~~~~   61 (125)
                      ++|+.|+.|++||+.+++.+..+.+|..+|.++.+++.....                    ...+...+.++++  ++.
T Consensus       173 ~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~  250 (445)
T 2ovr_B          173 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGR  250 (445)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSS
T ss_pred             EEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCC
Confidence            455566666666665555555555555566555554321111                    1134455666665  455


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         62 LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        62 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++++++.|+.|++||+++++.+..+..|...|.++.|  ++.++++++.|+.|++||++++
T Consensus       251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~  309 (445)
T 2ovr_B          251 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG  309 (445)
T ss_dssp             CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC
Confidence            6666666666666666666666666666666666666  5566666666666666666544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.83  E-value=4.2e-19  Score=110.30  Aligned_cols=119  Identities=18%  Similarity=0.249  Sum_probs=101.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecC-c--ccc------------------ccc-CCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH-Y--TTE------------------AGT-RQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~--~~~------------------~~~-~~~~~i~~~~~~~   58 (125)
                      |++++.|+.|++||  .++....+..+..++..+.+.+ .  ...                  ... .+...+.+++|+|
T Consensus       117 l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~  194 (313)
T 3odt_A          117 VISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVD  194 (313)
T ss_dssp             EEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEE
T ss_pred             EEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcC
Confidence            57899999999999  6777778888999999888743 1  111                  011 2778899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ++. +++++.++.|++||+++++.+..+..|...|.+++|+|++ .+++++.|+.|++||++++.
T Consensus       195 ~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~  257 (313)
T 3odt_A          195 DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS  257 (313)
T ss_dssp             TTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC
T ss_pred             CCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc
Confidence            988 9999999999999999999999999999999999999999 68999999999999998764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.83  E-value=1.7e-18  Score=110.92  Aligned_cols=123  Identities=21%  Similarity=0.308  Sum_probs=101.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeec-------------CCCCCeEEEEecCc-c--cccc-------------------c
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFK-------------PHTADVRSIHLDHY-T--TEAG-------------------T   45 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~-------------~~~~~i~~~~~~~~-~--~~~~-------------------~   45 (125)
                      |++|+.|+.|++||+.++.....+.             +|..+|.++.|.+. .  ....                   .
T Consensus        59 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  138 (408)
T 4a11_B           59 MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF  138 (408)
T ss_dssp             EEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec
Confidence            5799999999999999876655443             58899999999762 1  1111                   1


Q ss_pred             CCCCCeEEEEECCCC---CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCC-eEEEeecCCeEEEEeCCC
Q psy14458         46 RQGSPVSALCVDPSG---RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAY-YLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        46 ~~~~~i~~~~~~~~~---~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~i~~~~~~~  121 (125)
                      .+...+.++++++..   .++++++.++.|++||+.+++.+..+..|...|.+++|+|++. ++++++.|+.|++||+++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~  218 (408)
T 4a11_B          139 NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR  218 (408)
T ss_dssp             ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred             cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence            345678899999854   4999999999999999999999999999999999999999988 588999999999999976


Q ss_pred             CC
Q psy14458        122 TM  123 (125)
Q Consensus       122 ~~  123 (125)
                      ..
T Consensus       219 ~~  220 (408)
T 4a11_B          219 AS  220 (408)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.7e-19  Score=120.30  Aligned_cols=103  Identities=13%  Similarity=0.185  Sum_probs=83.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++++.|+.|++||...  ++..+. |..++               ....+.+++|||+++++++|+.||.|++||+.++
T Consensus       100 LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~---------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~  161 (588)
T 2j04_A          100 MAVLSNNGNVSVFKDNK--MLTNLD-SKGNL---------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN  161 (588)
T ss_dssp             EEEEETTSCEEEEETTE--EEEECC-CSSCS---------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred             EEEEeCCCcEEEEeCCc--eeeecc-CCCcc---------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence            58899999999999544  555555 44211               1136899999999999999999999999999887


Q ss_pred             ce-------eEEe----CCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 RP-------LQTF----KPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~-------~~~~----~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.       +..+    .+|.+.|.+++|+|||  +++++.|+++++||+.++.
T Consensus       162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             TTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred             ccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence            52       5665    5678899999999999  8889999999999997654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.83  E-value=2e-19  Score=116.72  Aligned_cols=114  Identities=17%  Similarity=0.260  Sum_probs=95.4

Q ss_pred             CeeecCCCeEEEEECC---CCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEE--ECCCCCEEEEEeCCCcEEEE
Q psy14458          1 MVSGHEDSSCVLYDIR---GSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALC--VDPSGRLMVSGHEDSSCVLY   75 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~i~~~   75 (125)
                      |++++.|+.|++||+.   .++....+..+  .+..+.+.+..      +...+.++.  +++++.++++++.|+.|++|
T Consensus       126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  197 (437)
T 3gre_A          126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIF  197 (437)
T ss_dssp             EEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------SCCCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             EEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc------cccCceEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            5899999999999995   56665555544  56666665422      336677777  67889999999999999999


Q ss_pred             EcCCCceeEEeCC--CCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         76 DIRGSRPLQTFKP--HTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        76 d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      |+++++.+..+..  |...|.+++|+|++.++++++.|+.|++||++++
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  246 (437)
T 3gre_A          198 DIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN  246 (437)
T ss_dssp             ETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             eCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc
Confidence            9999999998887  8899999999999999999999999999999865

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.83  E-value=8.2e-19  Score=112.87  Aligned_cols=123  Identities=12%  Similarity=0.275  Sum_probs=103.1

Q ss_pred             CeeecCCCeEEEEECCC----CcceeeecCCCCCeEEEEecCc-cc-------------------c---------c---c
Q psy14458          1 MVSGHEDSSCVLYDIRG----SRPLQTFKPHTADVRSIHLDHY-TT-------------------E---------A---G   44 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~----~~~~~~~~~~~~~i~~~~~~~~-~~-------------------~---------~---~   44 (125)
                      |++++.|+.|++||+..    .+.+..+.+|..+|.++.|.+. ..                   .         .   .
T Consensus        82 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  161 (416)
T 2pm9_A           82 IAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS  161 (416)
T ss_dssp             EEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS
T ss_pred             EEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc
Confidence            57899999999999987    3467778889999999998642 10                   0         0   1


Q ss_pred             cCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeEEeCCC------CCceeEEEEccCC-CeEEEeecCC---e
Q psy14458         45 TRQGSPVSALCVDPS-GRLMVSGHEDSSCVLYDIRGSRPLQTFKPH------TADVRSIRFSPSA-YYLLTGGYDN---K  113 (125)
Q Consensus        45 ~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~~~~~~~d~---~  113 (125)
                      ..+...+.+++|+|+ +.++++++.|+.|++||+++++.+..+..+      ...|.+++|+|++ .++++++.|+   .
T Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~  241 (416)
T 2pm9_A          162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS  241 (416)
T ss_dssp             CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred             cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence            235678999999999 789999999999999999999988888866      7889999999987 6899999998   9


Q ss_pred             EEEEeCCCCC
Q psy14458        114 LVLTDLQGTM  123 (125)
Q Consensus       114 i~~~~~~~~~  123 (125)
                      |++||++++.
T Consensus       242 i~~~d~~~~~  251 (416)
T 2pm9_A          242 ILIWDLRNAN  251 (416)
T ss_dssp             CCEEETTSTT
T ss_pred             EEEEeCCCCC
Confidence            9999998753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.82  E-value=7e-19  Score=114.65  Aligned_cols=118  Identities=23%  Similarity=0.348  Sum_probs=102.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccc--------------------cccCCCCCeEEEEECCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTE--------------------AGTRQGSPVSALCVDPSG   60 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------------~~~~~~~~i~~~~~~~~~   60 (125)
                      |++|+.|+.|++||+.+++.+..+.+|..+|.++.+++....                    ....|...|.+++++  +
T Consensus       132 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~  209 (445)
T 2ovr_B          132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--E  209 (445)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--T
T ss_pred             EEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--C
Confidence            579999999999999999999999999999999998653221                    123567889999985  5


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        61 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +.+++++.||.|++||+.+++.+..+..|...|.++.+  ++.++++++.|+.|++||++++
T Consensus       210 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~  269 (445)
T 2ovr_B          210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE  269 (445)
T ss_dssp             TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT
T ss_pred             CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC
Confidence            77999999999999999999999999999999999999  7889999999999999998764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=3.6e-20  Score=121.04  Aligned_cols=98  Identities=20%  Similarity=0.244  Sum_probs=83.6

Q ss_pred             eecCCCeEEEEECCCC--------cc---eeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC-CCEEEEEeCCC
Q psy14458          3 SGHEDSSCVLYDIRGS--------RP---LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS-GRLMVSGHEDS   70 (125)
Q Consensus         3 t~~~d~~i~v~d~~~~--------~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~   70 (125)
                      +|+.|+.|++||+.++        +.   ...+.+|.                    ..|.+++|+|+ +.++++++.||
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~--------------------~~V~~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG--------------------GMVIDMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG--------------------GSEEEEEECSSCTTEEEEEETTS
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCC--------------------CceEEEEECCCCCCEEEEEECCC
Confidence            7889999999998754        11   12222333                    78999999998 78999999999


Q ss_pred             cEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         71 SCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        71 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      .|++||++++........|...|.+++|+|+|++|++|+.|++|++||++
T Consensus       173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            99999999987776666788999999999999999999999999999987

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.82  E-value=3.7e-19  Score=122.78  Aligned_cols=102  Identities=18%  Similarity=0.379  Sum_probs=91.1

Q ss_pred             CeeecCCCeEEEEECC--CCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIR--GSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS--GRLMVSGHEDSSCVLYD   76 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~d   76 (125)
                      |++|+.|+.|++||+.  +++....+.+|.                    ..|.+++|+|+  +.++++++.||.|++||
T Consensus        24 latg~~dg~I~vwd~~~~~~~~~~~l~~h~--------------------~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd   83 (753)
T 3jro_A           24 LATCSSDKTIKIFEVEGETHKLIDTLTGHE--------------------GPVWRVDWAHPKFGTILASCSYDGKVLIWK   83 (753)
T ss_dssp             EEEEETTTEEEEEEEETTEEEEEEEECCCS--------------------SCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred             EEEEECCCcEEEEecCCCCCccceeccCCc--------------------CceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence            5789999999999997  345666777777                    78899999987  89999999999999999


Q ss_pred             cCCCc--eeEEeCCCCCceeEEEEccC--CCeEEEeecCCeEEEEeCCCC
Q psy14458         77 IRGSR--PLQTFKPHTADVRSIRFSPS--AYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        77 ~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +.+++  ....+..|...|.+++|+|+  +..+++++.|+.|++||++++
T Consensus        84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~  133 (753)
T 3jro_A           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  133 (753)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred             CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence            99886  67778889999999999998  999999999999999999876

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.82  E-value=6e-19  Score=114.51  Aligned_cols=106  Identities=19%  Similarity=0.279  Sum_probs=83.3

Q ss_pred             CeeecCCCeEEEEECCC-CcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRG-SRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~   78 (125)
                      |++| .|+.|++||++. ++....+....             .....|...|.+++|+|++ .++++++.||.|++||++
T Consensus       192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  257 (447)
T 3dw8_B          192 YLSA-DDLRINLWHLEITDRSFNIVDIKP-------------ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR  257 (447)
T ss_dssp             EEEE-CSSEEEEEETTEEEEEEEEEECCC-------------SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             EEEe-CCCeEEEEECCCCCceeeeeeccc-------------ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence            4667 799999999984 33333221000             0112233789999999998 999999999999999999


Q ss_pred             CCce----eEEeCCCCC------------ceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         79 GSRP----LQTFKPHTA------------DVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        79 ~~~~----~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      +++.    ...+..|..            .|.+++|+|+++++++++. +.|++||+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred             CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence            9876    778888876            8999999999999999999 9999999986

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.82  E-value=4.2e-19  Score=118.36  Aligned_cols=114  Identities=9%  Similarity=0.098  Sum_probs=92.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccc-------------cccCCCCCeEEEEECCCCCEEEEEe
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTE-------------AGTRQGSPVSALCVDPSGRLMVSGH   67 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~   67 (125)
                      +||++.|++|+  |...++.   +.+|...|..+.|.+....             ....+...|.+++|+|+|..+++++
T Consensus        30 iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s  104 (588)
T 2j04_A           30 YLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLS  104 (588)
T ss_dssp             EEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEE
T ss_pred             EEEEcCCceee--cccccce---ecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEe
Confidence            58999999999  7555544   4689999999988653311             1113467899999999999999999


Q ss_pred             CCCcEEEEEcCCCceeEEeCCCCC-----ceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         68 EDSSCVLYDIRGSRPLQTFKPHTA-----DVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        68 ~~~~i~~~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .||.|++||...  .+..+. |..     .|.+++|+|||++|++|+.||+|++||++++
T Consensus       105 ~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~  161 (588)
T 2j04_A          105 NNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN  161 (588)
T ss_dssp             TTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred             CCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence            999999999543  566666 665     4999999999999999999999999999876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.82  E-value=1.2e-18  Score=120.12  Aligned_cols=123  Identities=20%  Similarity=0.301  Sum_probs=105.9

Q ss_pred             CeeecCCCeEEEEECCCC-cceeeecCCCCCeEEEEecC-ccc--ccc---------------------cCCCCCeEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGS-RPLQTFKPHTADVRSIHLDH-YTT--EAG---------------------TRQGSPVSALC   55 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~--~~~---------------------~~~~~~i~~~~   55 (125)
                      |++++.|+.|++||+.++ .....+.+|..+|.++.|++ ...  ...                     ..+...+.+++
T Consensus       112 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~  191 (814)
T 3mkq_A          112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD  191 (814)
T ss_dssp             EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEE
T ss_pred             EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEE
Confidence            578999999999999887 56677888999999999976 211  110                     12337899999


Q ss_pred             ECC--CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         56 VDP--SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        56 ~~~--~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      |+|  ++.++++++.+|.|++||..+++.+..+..|...|.+++|+|++.++++++.|+.|++||+.++.
T Consensus       192 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (814)
T ss_dssp             ECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            999  89999999999999999999999999999999999999999999999999999999999998753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.81  E-value=2.5e-19  Score=115.50  Aligned_cols=102  Identities=13%  Similarity=0.211  Sum_probs=82.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~   79 (125)
                      |++|+.|++|++||+.++.++..+..+.                    ..+.+++|+|++ .++++++.|+.|++||+++
T Consensus       159 las~s~D~tv~~Wd~~~~~~~~~~~~~~--------------------~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t  218 (393)
T 4gq1_A          159 IASVGDDCTLIIWRLTDEGPILAGYPLS--------------------SPGISVQFRPSNPNQLIVGERNGNIRIFDWTL  218 (393)
T ss_dssp             EEEEETTSEEEEEEEETTEEEEEEEECS--------------------SCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred             EEEEECCCeEEEEECCCCceeeeecCCC--------------------CCcEEEEECCCCCceEEecCCCCEEEEEECCC
Confidence            5899999999999998887777766676                    678899999987 5899999999999999987


Q ss_pred             CceeEE-------------------------eCCCCCceeEEEEc-cCCCeEEEeecCCeEEEEeCCCC
Q psy14458         80 SRPLQT-------------------------FKPHTADVRSIRFS-PSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~-------------------------~~~~~~~v~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++....                         ...|...+.++.|. |+++.+++++.|+++++||+.++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~  287 (393)
T 4gq1_A          219 NLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN  287 (393)
T ss_dssp             CC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred             CcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence            643322                         12467788899986 69999999999999999998765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.81  E-value=1.7e-19  Score=114.08  Aligned_cols=111  Identities=12%  Similarity=0.122  Sum_probs=87.9

Q ss_pred             CeeecCCCeEEEEECCCC---cceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q psy14458          1 MVSGHEDSSCVLYDIRGS---RPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDI   77 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~   77 (125)
                      +++++.|+.|++||++..   +....+..|.....        ......+...+.+++|+|++.++++++.||.|++||+
T Consensus       231 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  302 (368)
T 3mmy_A          231 FALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT--------NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK  302 (368)
T ss_dssp             EEEEETTSEEEEEESSCSCHHHHSEEEECSEEC------------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             EEEecCCCcEEEEecCCCCccccceeeeeeecccc--------cccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence            478999999999999887   44556665542100        0000111237999999999999999999999999999


Q ss_pred             CCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         78 RGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      .+++.+..+..|...|.+++|+|++++|++++.|+..+.|++
T Consensus       303 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          303 DARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             TTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             CCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence            999999999999999999999999999999999876555543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.81  E-value=2.7e-18  Score=106.96  Aligned_cols=102  Identities=20%  Similarity=0.342  Sum_probs=87.4

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      ++.+.|++|++||+.+++++..+..+.                  |...|.+++|+|+++++++|+.|+.|++||+.+++
T Consensus        39 lAvg~D~tV~iWd~~tg~~~~~~~~~~------------------~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~  100 (318)
T 4ggc_A           39 LAVALDNSVYLWSASSGDILQLLQMEQ------------------PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK  100 (318)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEEECCS------------------TTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             EEEEeCCEEEEEECCCCCEEEEEEecC------------------CCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence            344569999999999999887776433                  22789999999999999999999999999999999


Q ss_pred             eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         82 PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+..+..|...+.++.+  ++..+++++.++.+.+|+.....
T Consensus       101 ~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~  140 (318)
T 4ggc_A          101 RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE  140 (318)
T ss_dssp             EEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS
T ss_pred             eEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc
Confidence            99999999988876655  67799999999999999987653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.80  E-value=1.6e-19  Score=129.21  Aligned_cols=122  Identities=17%  Similarity=0.212  Sum_probs=95.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecC---------------------cccccccCCCCCeEEEEECCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH---------------------YTTEAGTRQGSPVSALCVDPS   59 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~---------------------~~~~~~~~~~~~i~~~~~~~~   59 (125)
                      |++++.|+.|++||+.+++......... .+.++.+.+                     ........+...+.+++|+|+
T Consensus      1018 l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 1096 (1249)
T 3sfz_A         1018 LISSSEDSVIQVWNWQTGDYVFLQAHQE-TVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1096 (1249)
T ss_dssp             EEEECSSSBEEEEETTTTEEECCBCCSS-CEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSS
T ss_pred             EEEEcCCCEEEEEECCCCceEEEecCCC-cEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCC
Confidence            4788888888888888775543332222 122222211                     112222346688999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.++++++.|+.|++||+.+++.+..+..|...|.+++|+|+++++++++.|+.|++||+.++.
T Consensus      1097 ~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~ 1160 (1249)
T 3sfz_A         1097 ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160 (1249)
T ss_dssp             SSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSC
T ss_pred             CCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            9999999999999999999999998899999999999999999999999999999999998764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.79  E-value=9.6e-18  Score=106.88  Aligned_cols=119  Identities=12%  Similarity=0.072  Sum_probs=91.2

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCC-----------------CCCeEEEEECCCCCEEE
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQ-----------------GSPVSALCVDPSGRLMV   64 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~~~   64 (125)
                      ++++.|++|++||+.+++.+..+. +..+|.++.+++.........                 ......+++++  .+++
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la  151 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLV  151 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEE
T ss_pred             EEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEE
Confidence            568889999999999999888876 566899998876432221100                 00233455666  4555


Q ss_pred             E--EeCCCcEEEEEcCCCc----------------eeEEeCCCCCceeEEEEccCCCeEEEeecCCe-EEEEeCCCCC
Q psy14458         65 S--GHEDSSCVLYDIRGSR----------------PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNK-LVLTDLQGTM  123 (125)
Q Consensus        65 ~--~~~~~~i~~~d~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~~  123 (125)
                      .  |+.+|.|++||+.+++                .+..+.+|...|.+++|+|+++++++++.|++ |++||++++.
T Consensus       152 ~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~  229 (355)
T 3vu4_A          152 YSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV  229 (355)
T ss_dssp             EEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred             EeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence            5  6899999999998765                26778899999999999999999999999998 9999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.4e-17  Score=108.82  Aligned_cols=98  Identities=15%  Similarity=0.197  Sum_probs=86.0

Q ss_pred             CeeecCCCeEEEEECCCCcceee-ecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQT-FKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |++|+.|+.|++||+.+++.+.. +.+|.                    ..|.+++|+ ++.++++++.|+.|++||+.+
T Consensus       213 l~s~~~d~~i~vwd~~~~~~~~~~~~~h~--------------------~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~  271 (450)
T 2vdu_B          213 IITSDRDEHIKISHYPQCFIVDKWLFGHK--------------------HFVSSICCG-KDYLLLSAGGDDKIFAWDWKT  271 (450)
T ss_dssp             EEEEETTSCEEEEEESCTTCEEEECCCCS--------------------SCEEEEEEC-STTEEEEEESSSEEEEEETTT
T ss_pred             EEEEcCCCcEEEEECCCCceeeeeecCCC--------------------CceEEEEEC-CCCEEEEEeCCCeEEEEECCC
Confidence            57899999999999998888776 44666                    788999999 999999999999999999999


Q ss_pred             CceeEEeCC-------------------------CCCceeEEEEccCCCeEEEee-cCCeEEEEeC
Q psy14458         80 SRPLQTFKP-------------------------HTADVRSIRFSPSAYYLLTGG-YDNKLVLTDL  119 (125)
Q Consensus        80 ~~~~~~~~~-------------------------~~~~v~~~~~~~~~~~~~~~~-~d~~i~~~~~  119 (125)
                      ++.+..+..                         ....|.++.|+|+++++++++ .|+.|++|++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          272 GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            988777652                         235688999999999999998 8999999999

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.77  E-value=4.3e-18  Score=107.05  Aligned_cols=99  Identities=12%  Similarity=0.080  Sum_probs=85.4

Q ss_pred             CeeecCCCeEEEEECCCCc---ceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSR---PLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGR-LMVSGHEDSSCVLYD   76 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~d   76 (125)
                      |++++.|+.|++||+..++   ....+..|.                    ..|.+++|+|++. ++++++.||.|++||
T Consensus        26 l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~--------------------~~v~~~~~~~~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A           26 LLITSWDGSLTVYKFDIQAKNVDLLQSLRYK--------------------HPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             EEEEETTSEEEEEEEETTTTEEEEEEEEECS--------------------SCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             EEEEcCCCeEEEEEeCCCCccccceeeeecC--------------------CceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence            5789999999999998776   233333455                    7899999999999 999999999999999


Q ss_pred             c-CCCceeEEeCC--CCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         77 I-RGSRPLQTFKP--HTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        77 ~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      + .+++. ..+..  |...|.+++|+| +..+++++.|+.|++||+++
T Consensus        86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~  131 (342)
T 1yfq_A           86 LIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             SSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHH
T ss_pred             eccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccc
Confidence            9 76654 66777  999999999999 99999999999999999865

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.77  E-value=9.3e-18  Score=106.18  Aligned_cols=114  Identities=9%  Similarity=0.068  Sum_probs=90.3

Q ss_pred             eEEEEECCCCcceee-ecCCCCCeEEEEecCcc--cccccCCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCCce
Q psy14458          9 SCVLYDIRGSRPLQT-FKPHTADVRSIHLDHYT--TEAGTRQGSPVSALCVDP---SGRLMVSGHEDSSCVLYDIRGSRP   82 (125)
Q Consensus         9 ~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~--~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~i~~~d~~~~~~   82 (125)
                      .+.+|++.+++.+.. ..+|...|+.+.+.+..  ......++..++.++|++   ++..+++++.|++|++||+.++++
T Consensus       136 ~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~  215 (356)
T 2w18_A          136 IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL  215 (356)
T ss_dssp             EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE
T ss_pred             eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE
Confidence            377888887777766 46788888888886533  444557778899999999   679999999999999999999999


Q ss_pred             eEEeCCCCC---ceeEEEEccCCCeE------------EEeecCCeEEEEeCCCC
Q psy14458         83 LQTFKPHTA---DVRSIRFSPSAYYL------------LTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        83 ~~~~~~~~~---~v~~~~~~~~~~~~------------~~~~~d~~i~~~~~~~~  122 (125)
                      +..+..|..   .+.+++|+|+|.++            ++|+.|+++++||..++
T Consensus       216 l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg  270 (356)
T 2w18_A          216 LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT  270 (356)
T ss_dssp             EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred             EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence            999986543   56778999999876            56788999999998866

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.73  E-value=2.9e-16  Score=100.51  Aligned_cols=100  Identities=12%  Similarity=0.208  Sum_probs=85.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLM-VSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~i~~~d~~~   79 (125)
                      +++++.|+.|++||+.+++.+..+..+.                     .+.+++|+|+++++ ++++.++.|++||+.+
T Consensus         5 ~vs~~~d~~v~v~d~~~~~~~~~~~~~~---------------------~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~   63 (391)
T 1l0q_A            5 YIANSESDNISVIDVTSNKVTATIPVGS---------------------NPMGAVISPDGTKVYVANAHSNDVSIIDTAT   63 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSS---------------------SEEEEEECTTSSEEEEEEGGGTEEEEEETTT
T ss_pred             EEEcCCCCEEEEEECCCCeEEEEeecCC---------------------CcceEEECCCCCEEEEECCCCCeEEEEECCC
Confidence            4789999999999999998888777553                     57899999999876 6777999999999999


Q ss_pred             CceeEEeCCCCCceeEEEEccCCCeEEE-eecCCeEEEEeCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSPSAYYLLT-GGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~~i~~~~~~~~  122 (125)
                      ++.+..+..+. .+.+++|+|++++++. ++.++.|++||+.++
T Consensus        64 ~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~  106 (391)
T 1l0q_A           64 NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN  106 (391)
T ss_dssp             TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC
Confidence            99888887544 8999999999997755 556799999999875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.70  E-value=2.8e-16  Score=101.76  Aligned_cols=102  Identities=13%  Similarity=0.155  Sum_probs=87.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeee-----cCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTF-----KPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLY   75 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~   75 (125)
                      +++++.|+.|++||+.+++....+     .+|.                    ..+.+++|++++.++++++.++.|++|
T Consensus       137 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~--------------------~~v~~~~~~~~~~~~~s~~~d~~v~~~  196 (433)
T 3bws_A          137 AIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL--------------------GFVETISIPEHNELWVSQMQANAVHVF  196 (433)
T ss_dssp             EEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC--------------------CEEEEEEEGGGTEEEEEEGGGTEEEEE
T ss_pred             EEEeCCCCeEEEEECCCCeEeeecCcccccccC--------------------CceeEEEEcCCCEEEEEECCCCEEEEE
Confidence            367788899999999988776532     2344                    688999999999999999999999999


Q ss_pred             EcCCCceeEEeCCCCCceeEEEEccCCCeEE-EeecCCeEEEEeCCCC
Q psy14458         76 DIRGSRPLQTFKPHTADVRSIRFSPSAYYLL-TGGYDNKLVLTDLQGT  122 (125)
Q Consensus        76 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~  122 (125)
                      |+.+++.+..+..|...+.+++|+|+++.++ +++.|+.|++||++++
T Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  244 (433)
T 3bws_A          197 DLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK  244 (433)
T ss_dssp             ETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             ECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence            9999998888888899999999999998775 5557999999999765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.69  E-value=3.5e-15  Score=95.49  Aligned_cols=119  Identities=11%  Similarity=0.192  Sum_probs=94.9

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccc--c--------------------cCCCCCeEEEEECCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEA--G--------------------TRQGSPVSALCVDPS   59 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~--------------------~~~~~~i~~~~~~~~   59 (125)
                      ++++.|+.|++||+.+++.+..+..+. .+..+.|.+.....  .                    ......+.+++|+|+
T Consensus        48 ~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~d  126 (391)
T 1l0q_A           48 VANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPD  126 (391)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred             EECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCC
Confidence            577899999999999998888777544 88888886532211  0                    123356889999999


Q ss_pred             CCEE-EEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeE-EEeecCCeEEEEeCCCC
Q psy14458         60 GRLM-VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYL-LTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        60 ~~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~  122 (125)
                      ++.+ ++++.++.|++||+.+++....+..+ ..+.++.|+|+++.+ ++++.++.|++||++++
T Consensus       127 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~  190 (391)
T 1l0q_A          127 GKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN  190 (391)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            9877 78888999999999999888887754 456899999999877 67778999999999875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.68  E-value=7.3e-16  Score=98.61  Aligned_cols=107  Identities=9%  Similarity=0.085  Sum_probs=75.0

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEE--EeCCCcEEEEEcCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVS--GHEDSSCVLYDIRG   79 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~i~~~d~~~   79 (125)
                      ++++.|+.+++|++........+.      ....+     .....+...+.+++|+|+++++++  ++.|+.|++||+.+
T Consensus        98 ~s~~~d~~~r~~~~~~~~~~~~~~------~~~~~-----~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~  166 (365)
T 4h5i_A           98 TQGKGNKHLRKFKYDKVNDQLEFL------TSVDF-----DASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD  166 (365)
T ss_dssp             HHTSCCCCEEEEEEETTTTEEEEE------EEECS-----SCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT
T ss_pred             EEecCCCcEEEEEecCCCceEEEe------eeece-----eecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC
Confidence            356678889999886543321111      00000     001112256889999999998765  45789999999999


Q ss_pred             CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ++.+..+. |...|.+++|+|||+++++++.++. .+|+..+
T Consensus       167 ~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~-~~~~~~~  206 (365)
T 4h5i_A          167 LTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSL-EVISTVT  206 (365)
T ss_dssp             TEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCE-EEEETTT
T ss_pred             CcEEEEeC-CCCceEEEEEccCCceEEeccceeE-EEEEecc
Confidence            99988887 7788999999999999999986654 5555443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.67  E-value=4.1e-15  Score=96.31  Aligned_cols=101  Identities=14%  Similarity=0.096  Sum_probs=86.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMV-SGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~i~~~d~~~   79 (125)
                      +++++.|+.|++||+++++.+..+..+.                    ..+.+++|+|++..++ ++..++.|++||+.+
T Consensus       184 ~~s~~~d~~v~~~d~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  243 (433)
T 3bws_A          184 WVSQMQANAVHVFDLKTLAYKATVDLTG--------------------KWSKILLYDPIRDLVYCSNWISEDISVIDRKT  243 (433)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEEECSS--------------------SSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             EEEECCCCEEEEEECCCceEEEEEcCCC--------------------CCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence            4788999999999999988888777666                    6789999999998775 555899999999999


Q ss_pred             CceeEEeCCCCCceeEEEEccCCCeEEEee--------cCCeEEEEeCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSPSAYYLLTGG--------YDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------~d~~i~~~~~~~~  122 (125)
                      ++.+..+.. ...+.+++|+|+++.+++++        .|+.|++||++++
T Consensus       244 ~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~  293 (433)
T 3bws_A          244 KLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE  293 (433)
T ss_dssp             TEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred             CcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence            988887774 45589999999999998887        4889999999865

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.67  E-value=1.8e-15  Score=98.89  Aligned_cols=101  Identities=15%  Similarity=0.237  Sum_probs=79.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++++.|++|++||++++.......+|.                    ..+.+++|+|+++++++|+.||.|++||.+ +
T Consensus       165 las~s~Dg~v~iwD~~~~~~~~~~~~~~--------------------~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~  223 (434)
T 2oit_A          165 VAVCLADGSIAVLQVTETVKVCATLPST--------------------VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L  223 (434)
T ss_dssp             EEEEETTSCEEEEEESSSEEEEEEECGG--------------------GCEEEEEECTTSSCEEEEETTSCEEEECTT-C
T ss_pred             EEEEECCCeEEEEEcCCCcceeeccCCC--------------------CceeEEEEcCCCCEEEEEcCCCcEEEEccC-C
Confidence            5789999999999999886554444454                    688999999999999999999999999998 5


Q ss_pred             ceeEEeCCC-------CCceeEEEEccCCCeEEEe-ecCC------eEEEEeCCCC
Q psy14458         81 RPLQTFKPH-------TADVRSIRFSPSAYYLLTG-GYDN------KLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~-~~d~------~i~~~~~~~~  122 (125)
                      +....+..+       ...|.++.|++++.++++. +.||      .+++|++++.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          224 QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            555545433       2378999999988877553 3443      3899999764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.60  E-value=5.7e-14  Score=94.17  Aligned_cols=100  Identities=17%  Similarity=0.242  Sum_probs=86.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc--C
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDI--R   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~--~   78 (125)
                      +++++.|++|.+||..+++.+..+....                     .+..++++|+++++++++.++.|++||+  .
T Consensus       152 ~vs~~~d~~V~v~D~~t~~~~~~i~~g~---------------------~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~  210 (543)
T 1nir_A          152 SVTLRDAGQIALVDGDSKKIVKVIDTGY---------------------AVHISRMSASGRYLLVIGRDARIDMIDLWAK  210 (543)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEEECST---------------------TEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred             EEEEcCCCeEEEEECCCceEEEEEecCc---------------------ccceEEECCCCCEEEEECCCCeEEEEECcCC
Confidence            4678889999999999999888876432                     3778999999999999999999999999  7


Q ss_pred             CCceeEEeCCCCCceeEEEEcc----CCCeEEEeec-CCeEEEEeCCCC
Q psy14458         79 GSRPLQTFKPHTADVRSIRFSP----SAYYLLTGGY-DNKLVLTDLQGT  122 (125)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~-d~~i~~~~~~~~  122 (125)
                      +++.+..+. +...+.+++|+|    +|+++++++. +++|.+||..+.
T Consensus       211 t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~  258 (543)
T 1nir_A          211 EPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  258 (543)
T ss_dssp             SCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             CCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence            888888887 455678999999    9999999885 899999998765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.58  E-value=8.8e-14  Score=90.40  Aligned_cols=93  Identities=16%  Similarity=0.136  Sum_probs=75.2

Q ss_pred             CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCC---cEEEEEcCCCceeE
Q psy14458          8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDS---SCVLYDIRGSRPLQ   84 (125)
Q Consensus         8 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~i~~~d~~~~~~~~   84 (125)
                      +.|++||+.. .....+..+.                    ..+.+++|+|+++.++.++.++   .|++||+.+++...
T Consensus       159 ~~i~i~d~~g-~~~~~l~~~~--------------------~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~  217 (415)
T 2hqs_A          159 YELRVSDYDG-YNQFVVHRSP--------------------QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ  217 (415)
T ss_dssp             EEEEEEETTS-CSCEEEEEES--------------------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred             ceEEEEcCCC-CCCEEEeCCC--------------------CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE
Confidence            7999999874 4455555555                    6789999999999999998875   89999999887654


Q ss_pred             EeCCCCCceeEEEEccCCCeEE-EeecCCe--EEEEeCCCC
Q psy14458         85 TFKPHTADVRSIRFSPSAYYLL-TGGYDNK--LVLTDLQGT  122 (125)
Q Consensus        85 ~~~~~~~~v~~~~~~~~~~~~~-~~~~d~~--i~~~~~~~~  122 (125)
                       +..|...+.+++|+|||+.|+ +++.++.  |++||++++
T Consensus       218 -l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~  257 (415)
T 2hqs_A          218 -VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG  257 (415)
T ss_dssp             -EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             -eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence             556788899999999999887 6665554  999999765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.56  E-value=4.9e-13  Score=86.91  Aligned_cols=101  Identities=11%  Similarity=0.119  Sum_probs=77.5

Q ss_pred             CeeecCCC---eEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEE-EEeCCCc--EEE
Q psy14458          1 MVSGHEDS---SCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMV-SGHEDSS--CVL   74 (125)
Q Consensus         1 l~t~~~d~---~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~--i~~   74 (125)
                      |++++.|+   .|++||+.+++... +..+.                    ..+.+++|+|+++.++ +++.++.  |++
T Consensus       193 la~~s~~~~~~~i~~~d~~tg~~~~-l~~~~--------------------~~~~~~~~spdg~~la~~~~~~g~~~i~~  251 (415)
T 2hqs_A          193 LAYVTFESGRSALVIQTLANGAVRQ-VASFP--------------------RHNGAPAFSPDGSKLAFALSKTGSLNLYV  251 (415)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEE-EECCS--------------------SCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             EEEEEecCCCcEEEEEECCCCcEEE-eecCC--------------------CcccCEEEcCCCCEEEEEEecCCCceEEE
Confidence            35566664   89999998877643 44444                    5788999999999777 6666655  999


Q ss_pred             EEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec-CC--eEEEEeCCCCC
Q psy14458         75 YDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY-DN--KLVLTDLQGTM  123 (125)
Q Consensus        75 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~--~i~~~~~~~~~  123 (125)
                      ||+.+++. ..+..|...+.++.|+|||+.|+.++. ++  .|.+||+.++.
T Consensus       252 ~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          252 MDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             EETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             EECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            99988775 456678888999999999999988876 44  68888887653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.51  E-value=7.8e-13  Score=82.92  Aligned_cols=101  Identities=9%  Similarity=0.075  Sum_probs=79.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHE-DSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~d~~~   79 (125)
                      +++.+.++.|.+||+.+++....+..+.                    ... .++|+|++++++.++. ++.|++||..+
T Consensus        13 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~--------------------~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~   71 (331)
T 3u4y_A           13 IVVEQHLRRISFFSTDTLEILNQITLGY--------------------DFV-DTAITSDCSNVVVTSDFCQTLVQIETQL   71 (331)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEEECCC--------------------CEE-EEEECSSSCEEEEEESTTCEEEEEECSS
T ss_pred             EEEecCCCeEEEEeCcccceeeeEEccC--------------------Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence            3678889999999999988877666443                    455 9999999986666555 88999999998


Q ss_pred             Cce-eEEeCCCCCceeEEEEccCCCeEEEeecCC---eEEEEeCCCC
Q psy14458         80 SRP-LQTFKPHTADVRSIRFSPSAYYLLTGGYDN---KLVLTDLQGT  122 (125)
Q Consensus        80 ~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~---~i~~~~~~~~  122 (125)
                      ++. ...+..+.....++.|+|++++++++..++   .|.+||+.++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~  118 (331)
T 3u4y_A           72 EPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN  118 (331)
T ss_dssp             SSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred             CceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence            887 666665666655599999999998655553   8999999765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.46  E-value=2e-12  Score=92.14  Aligned_cols=74  Identities=18%  Similarity=0.271  Sum_probs=66.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCC----------eEEEEe
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN----------KLVLTD  118 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~----------~i~~~~  118 (125)
                      ..+..++|+|+++++++++.++.|++||+.+++.......|...+.+++|+|||++++.++.++          .|++||
T Consensus       379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d  458 (1045)
T 1k32_A          379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD  458 (1045)
T ss_dssp             CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence            6788999999999999999999999999999988777767888999999999999998887654          899999


Q ss_pred             CCCC
Q psy14458        119 LQGT  122 (125)
Q Consensus       119 ~~~~  122 (125)
                      +.++
T Consensus       459 ~~~g  462 (1045)
T 1k32_A          459 MEGR  462 (1045)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            9765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.46  E-value=1.2e-12  Score=89.91  Aligned_cols=120  Identities=12%  Similarity=0.119  Sum_probs=80.2

Q ss_pred             CeeecC-CC-----eEEEEECCCCcceeeecCCCCC--eEEEEecCccccccc--CCCCCeEEEEECCCCCEEEEEeCCC
Q psy14458          1 MVSGHE-DS-----SCVLYDIRGSRPLQTFKPHTAD--VRSIHLDHYTTEAGT--RQGSPVSALCVDPSGRLMVSGHEDS   70 (125)
Q Consensus         1 l~t~~~-d~-----~i~v~d~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~   70 (125)
                      |++++. |+     .|.+||+.+++....+..+...  -..+...........  .....+..++|+|+++++++++. +
T Consensus        51 la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~  129 (741)
T 2ecf_A           51 VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-G  129 (741)
T ss_dssp             EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-T
T ss_pred             EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-C
Confidence            355666 77     8999999988776655433211  000000000000000  00023788999999999999886 9


Q ss_pred             cEEEEEcCCCc--eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         71 SCVLYDIRGSR--PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        71 ~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .|++||+.++.  ....+..+...+..+.|+|||+.|+.++ ++.|++||+.++
T Consensus       130 ~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g  182 (741)
T 2ecf_A          130 ELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG  182 (741)
T ss_dssp             EEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred             cEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC
Confidence            99999998873  3444666778899999999999999887 468999999765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.45  E-value=6.5e-12  Score=79.17  Aligned_cols=110  Identities=10%  Similarity=0.043  Sum_probs=83.4

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEe--CCCcEEEEEcCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH--EDSSCVLYDIRG   79 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~i~~~d~~~   79 (125)
                      ++...++.|.+||+.+++.+..+..+...-           ........+.+++++|+++.++.++  .++.|.+||..+
T Consensus       105 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~  173 (353)
T 3vgz_A          105 FGNTVNSAVTAIDAKTGEVKGRLVLDDRKR-----------TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN  173 (353)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEESCCCCC-----------CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred             EEecCCCEEEEEeCCCCeeEEEEecCCCcc-----------ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence            455667899999998888776665432100           0000002368899999998777665  478899999999


Q ss_pred             CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++....+..+...+..+.|+|+++.++.++.++.+.+||+.++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~  216 (353)
T 3vgz_A          174 IKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN  216 (353)
T ss_dssp             TEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT
T ss_pred             CceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            9988888756666889999999999999999999999998765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.44  E-value=3.1e-12  Score=78.45  Aligned_cols=95  Identities=16%  Similarity=0.152  Sum_probs=73.2

Q ss_pred             eecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-Cc
Q psy14458          3 SGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG-SR   81 (125)
Q Consensus         3 t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~   81 (125)
                      +++.|+.|++||+.+++...... +.                    ..+.+++|+|+++++++++ ++.|++||+.+ ++
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~-~~--------------------~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~   74 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQ-TP--------------------ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS   74 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEE-ES--------------------SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS
T ss_pred             CCCcceeEEEEeCCCCceeeecc-CC--------------------cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC
Confidence            35678999999998877654333 44                    6789999999999999886 78999999998 77


Q ss_pred             eeEEeCCC-CCceeEEEEccCCCeEEEee--cCCeEEEEeC
Q psy14458         82 PLQTFKPH-TADVRSIRFSPSAYYLLTGG--YDNKLVLTDL  119 (125)
Q Consensus        82 ~~~~~~~~-~~~v~~~~~~~~~~~~~~~~--~d~~i~~~~~  119 (125)
                      .......+ ...+.+++|+|++++++.++  .++...+|.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~  115 (297)
T 2ojh_A           75 PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLL  115 (297)
T ss_dssp             CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE
T ss_pred             ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEE
Confidence            66655545 36788999999999999988  3344444443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.44  E-value=3.4e-12  Score=80.27  Aligned_cols=102  Identities=10%  Similarity=0.037  Sum_probs=80.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLM-VSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~i~~~d~~~   79 (125)
                      +++++.++.|.+||+.+++.+..+.....                   ..+..++|+|+++++ ++...++.|.+||+.+
T Consensus        14 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-------------------~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t   74 (349)
T 1jmx_B           14 MIVTNYPNNLHVVDVASDTVYKSCVMPDK-------------------FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT   74 (349)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECSSC-------------------CSSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEeCCCCeEEEEECCCCcEEEEEecCCC-------------------CCCceeEECCCCCEEEEEeCCCCcEEEEeCCC
Confidence            46788999999999999887776653220                   246788999999865 4556789999999999


Q ss_pred             CceeEEeCCC------CCceeEEEEccCCCeEEEeecC------------CeEEEEeCCC
Q psy14458         80 SRPLQTFKPH------TADVRSIRFSPSAYYLLTGGYD------------NKLVLTDLQG  121 (125)
Q Consensus        80 ~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~d------------~~i~~~~~~~  121 (125)
                      ++....+...      ...+..+.|+|+|+++++++.+            +.|.+||+.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~  134 (349)
T 1jmx_B           75 CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD  134 (349)
T ss_dssp             TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred             CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
Confidence            8877666532      2337889999999999998865            8999999876

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.44  E-value=3.6e-12  Score=79.71  Aligned_cols=103  Identities=16%  Similarity=0.143  Sum_probs=80.1

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCC-CeEEEEECCCCCEE-EEEeCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGS-PVSALCVDPSGRLM-VSGHEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~-~~~~~~~~i~~~d~~   78 (125)
                      |++++.++.|.+||+.+++.+..+.....                   . .+..++|+|+++.+ ++...++.|.+||+.
T Consensus         4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-------------------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~   64 (337)
T 1pby_B            4 ILAPARPDKLVVIDTEKMAVDKVITIADA-------------------GPTPMVPMVAPGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTC-------------------TTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEEEcCCC-------------------CCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence            47889999999999999888776653220                   1 46788999999765 556667899999999


Q ss_pred             CCceeEEeCC-C----CCceeEEEEccCCCeEEEee------------cCCeEEEEeCCCC
Q psy14458         79 GSRPLQTFKP-H----TADVRSIRFSPSAYYLLTGG------------YDNKLVLTDLQGT  122 (125)
Q Consensus        79 ~~~~~~~~~~-~----~~~v~~~~~~~~~~~~~~~~------------~d~~i~~~~~~~~  122 (125)
                      +++.+..+.. +    ...+..+.|+|++++++++.            .++.|.+||+.++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~  125 (337)
T 1pby_B           65 TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL  125 (337)
T ss_dssp             TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT
T ss_pred             CCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC
Confidence            9887766652 1    12577899999999888876            5799999999765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.44  E-value=6e-13  Score=91.16  Aligned_cols=101  Identities=12%  Similarity=0.141  Sum_probs=78.9

Q ss_pred             ecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCC---------CcEEE
Q psy14458          4 GHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHED---------SSCVL   74 (125)
Q Consensus         4 ~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------~~i~~   74 (125)
                      .+.|+.|++||+.+++....+..+...                 ...+..++|||+++++++++.+         +.+++
T Consensus        33 ~~~dg~i~~~d~~~g~~~~~~~~~~~~-----------------~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           33 REQKGTVRLWNVETNTSTVLIEGKKIE-----------------SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCSSSCEEEBCGGGCCCEEEECTTTTT-----------------TTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             EeCCCCEEEEECCCCcEEEEecccccc-----------------ccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            368899999999998887776654410                 0148899999999999998764         77889


Q ss_pred             EEcCCCceeEEeC---CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         75 YDIRGSRPLQTFK---PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        75 ~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ||+.+++. ..+.   .|...+..++|+|||+.|+.++. +.|++||+.++.
T Consensus        96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~  145 (723)
T 1xfd_A           96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ  145 (723)
T ss_dssp             EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC
T ss_pred             EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc
Confidence            99988775 3333   34455889999999999999876 789999987653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.41  E-value=1.4e-11  Score=77.57  Aligned_cols=99  Identities=11%  Similarity=0.109  Sum_probs=79.0

Q ss_pred             cCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeE
Q psy14458          5 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQ   84 (125)
Q Consensus         5 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~   84 (125)
                      +.++.|.+||+.+++....+....                    ..+.+++|+|+++.++.++.++.+.+||..+++...
T Consensus       161 ~~~~~i~~~d~~~~~~~~~~~~~~--------------------~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~  220 (353)
T 3vgz_A          161 GKESVIWVVDGGNIKLKTAIQNTG--------------------KMSTGLALDSEGKRLYTTNADGELITIDTADNKILS  220 (353)
T ss_dssp             SSSCEEEEEETTTTEEEEEECCCC--------------------TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEE
T ss_pred             CCCceEEEEcCCCCceEEEecCCC--------------------CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEE
Confidence            357889999998888777665333                    456788999999999999999999999999998877


Q ss_pred             EeCC----CCCceeEEEEccCCCeEEEee-cCCeEEEEeCCCCC
Q psy14458         85 TFKP----HTADVRSIRFSPSAYYLLTGG-YDNKLVLTDLQGTM  123 (125)
Q Consensus        85 ~~~~----~~~~v~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~  123 (125)
                      .+..    +...+..+.|+|+++.++.++ .++.|.+||+.++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  264 (353)
T 3vgz_A          221 RKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN  264 (353)
T ss_dssp             EEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred             EEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence            6653    345677899999998776665 45999999997653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.40  E-value=4.8e-12  Score=84.92  Aligned_cols=102  Identities=12%  Similarity=0.117  Sum_probs=81.9

Q ss_pred             eeec-CCCeEEEEECCC-------CcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEe------
Q psy14458          2 VSGH-EDSSCVLYDIRG-------SRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH------   67 (125)
Q Consensus         2 ~t~~-~d~~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------   67 (125)
                      ++++ .|++|.+||..+       ++.+..+..+.                    .....++++|+++++.+++      
T Consensus       386 ~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g--------------------~~~~~v~~~pdg~~l~v~~~~~~~~  445 (543)
T 1nir_A          386 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG--------------------GGSLFIKTHPKSSHLYVDTTFNPDA  445 (543)
T ss_dssp             EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--------------------SCCCCEECCTTCCEEEECCTTCSSH
T ss_pred             EeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC--------------------CCceEEEcCCCCCcEEEecCCCCCc
Confidence            4554 689999999988       67777877766                    5667889999999999987      


Q ss_pred             -CCCcEEEEEcCCCcee-EEe--------CCCCCceeEEEEccCCCeEEEe-----ecCCeEEEEeCCCCC
Q psy14458         68 -EDSSCVLYDIRGSRPL-QTF--------KPHTADVRSIRFSPSAYYLLTG-----GYDNKLVLTDLQGTM  123 (125)
Q Consensus        68 -~~~~i~~~d~~~~~~~-~~~--------~~~~~~v~~~~~~~~~~~~~~~-----~~d~~i~~~~~~~~~  123 (125)
                       .+++|.+||+.+++.. ..+        ..+...+.++.|+|+|+.++.+     +.|+.|.+||..++.
T Consensus       446 ~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~  516 (543)
T 1nir_A          446 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  516 (543)
T ss_dssp             HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             ccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence             2679999999998776 443        3456789999999999988765     247999999998763

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.40  E-value=1.2e-12  Score=89.88  Aligned_cols=102  Identities=16%  Similarity=0.261  Sum_probs=77.4

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeC---------CCcE
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHE---------DSSC   72 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------~~~i   72 (125)
                      +..+.|+.|++||+.+++....+..+...                 ...+.+++|||++++++.++.         ++.|
T Consensus        30 ~~~~~d~~i~~~~~~~g~~~~~~~~~~~~-----------------~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i   92 (719)
T 1z68_A           30 LHQSADNNIVLYNIETGQSYTILSNRTMK-----------------SVNASNYGLSPDRQFVYLESDYSKLWRYSYTATY   92 (719)
T ss_dssp             EEECTTSCEEEEESSSCCEEEEECHHHHH-----------------TTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEEcccccc-----------------ccceeeEEECCCCCeEEEEecCceeEEeecceEE
Confidence            34456899999999988876666543200                 013789999999999988876         6899


Q ss_pred             EEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         73 VLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        73 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++||+.+++.+.... ....+..++|+|||+.|+.+. ++.|++|++.++
T Consensus        93 ~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g  140 (719)
T 1z68_A           93 YIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD  140 (719)
T ss_dssp             EEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred             EEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCC
Confidence            999999887631111 235688999999999999885 789999999765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.39  E-value=2.1e-12  Score=86.81  Aligned_cols=90  Identities=12%  Similarity=0.118  Sum_probs=74.8

Q ss_pred             CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCC--cEEEEEcCCCceeEE
Q psy14458          8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDS--SCVLYDIRGSRPLQT   85 (125)
Q Consensus         8 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~   85 (125)
                      ..|++||+.+++.. .+..+.                    ..+..++|+|+|+.++++..++  .|++||+.+++.. .
T Consensus       175 ~~i~~~d~~~g~~~-~l~~~~--------------------~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~  232 (582)
T 3o4h_A          175 VSLFTSNLSSGGLR-VFDSGE--------------------GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D  232 (582)
T ss_dssp             EEEEEEETTTCCCE-EECCSS--------------------CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred             eEEEEEcCCCCCce-EeecCC--------------------CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E
Confidence            67888888776654 344444                    5678999999999999888888  8999999988877 6


Q ss_pred             eCCCCCceeEEE--------EccCCCeEEEeecCCeEEEEeC
Q psy14458         86 FKPHTADVRSIR--------FSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        86 ~~~~~~~v~~~~--------~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      +..|...+..+.        |+|||.++++++.|+++++|++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          233 LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            777777777777        9999988899999999999998

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.39  E-value=1.5e-11  Score=75.33  Aligned_cols=75  Identities=16%  Similarity=0.210  Sum_probs=61.9

Q ss_pred             CCeEEEEECCCCCEEEEEe-CCCcEEEEEcC-CCceeEEeCCCCCceeEEEEccCCCeEEEeecC-----------CeEE
Q psy14458         49 SPVSALCVDPSGRLMVSGH-EDSSCVLYDIR-GSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD-----------NKLV  115 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~-~~~~i~~~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-----------~~i~  115 (125)
                      ..+.+++|+|+++.++.++ .++.+++|++. .+.....+..+...+.++.|+|++++++.++.+           ..|.
T Consensus       173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~  252 (297)
T 2ojh_A          173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ  252 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred             CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence            6788999999999877665 58899999986 455666777788889999999999999888765           5699


Q ss_pred             EEeCCCCC
Q psy14458        116 LTDLQGTM  123 (125)
Q Consensus       116 ~~~~~~~~  123 (125)
                      +||++++.
T Consensus       253 ~~d~~~~~  260 (297)
T 2ojh_A          253 LMDMDGGN  260 (297)
T ss_dssp             EEETTSCS
T ss_pred             EEecCCCC
Confidence            99998754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.35  E-value=3.2e-11  Score=75.44  Aligned_cols=103  Identities=14%  Similarity=0.197  Sum_probs=77.6

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEe------------CC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH------------ED   69 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------~~   69 (125)
                      +++..++.|.+||+.+++.+..+.......               +...+..++|+|++++++.++            .+
T Consensus        50 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           50 ATVNKSESLVKIDLVTGETLGRIDLSTPEE---------------RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEECCBTTE---------------EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             EEeCCCCeEEEEECCCCCeEeeEEcCCccc---------------ccccccceEECCCCCEEEEEecccccccccccccC
Confidence            456678899999998887766554211000               002456889999999888886            57


Q ss_pred             CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         70 SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        70 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +.|.+||+.+++....+.. ...+.++.|+|++++++.+  ++.+.+||+.++
T Consensus       115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~  164 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAG  164 (337)
T ss_dssp             CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTT
T ss_pred             ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCC
Confidence            9999999998887777663 4567889999999988877  688999999765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.34  E-value=1.1e-11  Score=83.28  Aligned_cols=71  Identities=15%  Similarity=0.058  Sum_probs=60.8

Q ss_pred             EEEEECCCCCEEEEEeCC----CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCC--eEEEEeCCCCC
Q psy14458         52 SALCVDPSGRLMVSGHED----SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN--KLVLTDLQGTM  123 (125)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~--~i~~~~~~~~~  123 (125)
                      .+++|+|+|+++++++.+    +.|++||+.+++.. .+..|...+..++|+|||+.|+++..++  .|++||+.++.
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence            688999999999987766    77999999887754 5667888899999999999999877888  89999998754

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.34  E-value=1.8e-11  Score=87.26  Aligned_cols=99  Identities=12%  Similarity=0.188  Sum_probs=81.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCC----------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDS----------   70 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------   70 (125)
                      |++++.++.|++||+.+++....+..+.                    ..+..++|+|++++++.++.++          
T Consensus       393 la~~~~~~~v~~~d~~tg~~~~~~~~~~--------------------~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~  452 (1045)
T 1k32_A          393 AVVANDRFEIMTVDLETGKPTVIERSRE--------------------AMITDFTISDNSRFIAYGFPLKHGETDGYVMQ  452 (1045)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECSS--------------------SCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred             EEEECCCCeEEEEECCCCceEEeccCCC--------------------CCccceEECCCCCeEEEEecCccccccCCCCC
Confidence            4678889999999999888776665555                    5678899999999998877654          


Q ss_pred             cEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         71 SCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        71 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      .|++||+.+++ ...+..|...+..+.|+|||+.++.++.++....|+..
T Consensus       453 ~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          453 AIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             EEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             eEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence            89999998877 66677788888999999999999999988877777653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.33  E-value=3.1e-11  Score=75.66  Aligned_cols=97  Identities=13%  Similarity=0.218  Sum_probs=71.3

Q ss_pred             eeecCCCeEEEEECCC-Cc--ceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCC-CcEEEEEc
Q psy14458          2 VSGHEDSSCVLYDIRG-SR--PLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHED-SSCVLYDI   77 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~-~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~i~~~d~   77 (125)
                      ++++.|+.|++||+.. ++  .+..+. +.                    ..+.+++|+|+++++++++.+ +.|.+|++
T Consensus         9 ~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~--------------------~~~~~~~~spdg~~l~~~~~~~~~v~~~~~   67 (343)
T 1ri6_A            9 IASPESQQIHVWNLNHEGALTLTQVVD-VP--------------------GQVQPMVVSPDKRYLYVGVRPEFRVLAYRI   67 (343)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEE-CS--------------------SCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EeCCCCCeEEEEEECCCCcEEEeeeEe-cC--------------------CCCceEEECCCCCEEEEeecCCCeEEEEEe
Confidence            4557899999999853 32  222222 22                    567889999999988888776 89999999


Q ss_pred             C--CCc--eeEEeCCCCCceeEEEEccCCCeEEEee-cCCeEEEEeCC
Q psy14458         78 R--GSR--PLQTFKPHTADVRSIRFSPSAYYLLTGG-YDNKLVLTDLQ  120 (125)
Q Consensus        78 ~--~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~i~~~~~~  120 (125)
                      .  +++  .+..+..+. .+..++|+|+++++++++ .++.|.+||+.
T Consensus        68 ~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           68 APDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             CTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence            7  444  334444333 788999999999876665 48899999983

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.33  E-value=8.2e-11  Score=73.72  Aligned_cols=98  Identities=12%  Similarity=0.122  Sum_probs=72.8

Q ss_pred             eecCCCeEEEEECCCCcc-eeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCC---cEEEEEcC
Q psy14458          3 SGHEDSSCVLYDIRGSRP-LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDS---SCVLYDIR   78 (125)
Q Consensus         3 t~~~d~~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~i~~~d~~   78 (125)
                      ++..++.|.+||+.+++. ...+..+.                    ....+++|+|++++++++..++   .|.+||+.
T Consensus        57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~--------------------~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~  116 (331)
T 3u4y_A           57 TSDFCQTLVQIETQLEPPKVVAIQEGQ--------------------SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL  116 (331)
T ss_dssp             EESTTCEEEEEECSSSSCEEEEEEECS--------------------SCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred             EeCCCCeEEEEECCCCceeEEecccCC--------------------CCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence            444578899999988776 55554443                    3444489999999988655553   89999999


Q ss_pred             CCceeEEeCCCCCceeEEEEccCCCeEEEe-ecCCe-EEEEeCCC
Q psy14458         79 GSRPLQTFKPHTADVRSIRFSPSAYYLLTG-GYDNK-LVLTDLQG  121 (125)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~d~~-i~~~~~~~  121 (125)
                      +++.+..+.. .....++.|+|+|++++++ ..++. +.+|++..
T Consensus       117 ~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A          117 KNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             TTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            9988877764 3456899999999855554 55678 99999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.31  E-value=6.8e-11  Score=81.34  Aligned_cols=84  Identities=12%  Similarity=0.187  Sum_probs=62.6

Q ss_pred             CeEEEEECCCCc--ceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEE
Q psy14458          8 SSCVLYDIRGSR--PLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQT   85 (125)
Q Consensus         8 ~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~   85 (125)
                      +.|.+||+.++.  ....+..+.                    ..+..++|+|++++++.++ ++.|++||+.+++....
T Consensus       129 ~~i~~~d~~~~~~~~~~~l~~~~--------------------~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          129 GELYLYDLKQEGKAAVRQLTHGE--------------------GFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             TEEEEEESSSCSTTSCCBCCCSS--------------------SCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             CcEEEEECCCCCcceEEEcccCC--------------------cccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence            788889988762  333344343                    6788999999999999887 46899999988776554


Q ss_pred             eCCCCCc----------------eeEEEEccCCCeEEEeecCC
Q psy14458         86 FKPHTAD----------------VRSIRFSPSAYYLLTGGYDN  112 (125)
Q Consensus        86 ~~~~~~~----------------v~~~~~~~~~~~~~~~~~d~  112 (125)
                      ...+...                +..+.|+|||+.|+.++.|+
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence            4333322                47899999999999988765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.31  E-value=3.6e-11  Score=83.09  Aligned_cols=99  Identities=12%  Similarity=0.225  Sum_probs=77.5

Q ss_pred             CCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCC---------CcEEEEEc
Q psy14458          7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHED---------SSCVLYDI   77 (125)
Q Consensus         7 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------~~i~~~d~   77 (125)
                      |+.|++||+.++++...+.++....               .......+.|||++++++.++.+         +.+.+||+
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~   99 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFDE---------------FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTTT---------------CCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CCcEEEEECCCCceEEEEechhhhh---------------hcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence            8999999999998877776654211               00123458999999999998875         56679999


Q ss_pred             CCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         78 RGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .+++... +..+...+....|+|||+.|+.+ .|+.|++|++.++
T Consensus       100 ~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~  142 (740)
T 4a5s_A          100 NKRQLIT-EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNL  142 (740)
T ss_dssp             TTTEECC-SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTS
T ss_pred             CCCcEEE-cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCC
Confidence            9887543 55677789999999999999888 5789999998765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.29  E-value=7.9e-11  Score=73.78  Aligned_cols=98  Identities=9%  Similarity=0.175  Sum_probs=69.0

Q ss_pred             eecCCCeEEEEECCCC---cceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcC
Q psy14458          3 SGHEDSSCVLYDIRGS---RPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH-EDSSCVLYDIR   78 (125)
Q Consensus         3 t~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~d~~   78 (125)
                      ++..++.|.+||+..+   +....+...                     ..+.+++|+|+++++++++ .++.|++||+.
T Consensus       101 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~---------------------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  159 (343)
T 1ri6_A          101 GSYNAGNVSVTRLEDGLPVGVVDVVEGL---------------------DGCHSANISPDNRTLWVPALKQDRICLFTVS  159 (343)
T ss_dssp             EETTTTEEEEEEEETTEEEEEEEEECCC---------------------TTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             EecCCCeEEEEECCCCccccccccccCC---------------------CCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence            3445788888888422   233333222                     4578899999999887777 88999999998


Q ss_pred             C-CceeE----EeC-CCCCceeEEEEccCCCeEEEe-ecCCeEEEEeCCC
Q psy14458         79 G-SRPLQ----TFK-PHTADVRSIRFSPSAYYLLTG-GYDNKLVLTDLQG  121 (125)
Q Consensus        79 ~-~~~~~----~~~-~~~~~v~~~~~~~~~~~~~~~-~~d~~i~~~~~~~  121 (125)
                      + ++...    .+. .....+.++.|+|++++++.+ ..++.+.+|++..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD  209 (343)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            7 54322    222 234568889999999976555 4799999999954

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.29  E-value=4.5e-10  Score=70.58  Aligned_cols=72  Identities=13%  Similarity=0.086  Sum_probs=60.9

Q ss_pred             CCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         49 SPVSALCVDP-SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        49 ~~i~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..+..++++| ++++++.+  ++.|.+||+.+++.+..+. ....+.+++|+|+++.+++++.++.|.+||+.++.
T Consensus       255 ~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          255 ELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             SCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             CcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence            4677889999 99998888  8899999999988877766 33457789999999988888889999999998653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.28  E-value=3.3e-11  Score=82.65  Aligned_cols=87  Identities=16%  Similarity=0.221  Sum_probs=63.0

Q ss_pred             CCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q psy14458          7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTF   86 (125)
Q Consensus         7 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~   86 (125)
                      ++.+.+||+.+++. ..+....                 .+...+..++|||+++.++.++. +.|++||+.+++.....
T Consensus        90 ~~~i~~~d~~~~~~-~~l~~~~-----------------~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~  150 (723)
T 1xfd_A           90 TGYYVLSKIPHGDP-QSLDPPE-----------------VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVV  150 (723)
T ss_dssp             CSEEEEEESSSCCC-EECCCTT-----------------CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEE
T ss_pred             eeeEEEEECCCCce-EeccCCc-----------------cccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEe
Confidence            47888999988765 2222111                 01145778999999999999876 78999999888766655


Q ss_pred             CCCCCce------------------eEEEEccCCCeEEEeecCC
Q psy14458         87 KPHTADV------------------RSIRFSPSAYYLLTGGYDN  112 (125)
Q Consensus        87 ~~~~~~v------------------~~~~~~~~~~~~~~~~~d~  112 (125)
                      ..+...+                  .++.|+|||+.|+.++.|+
T Consensus       151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~  194 (723)
T 1xfd_A          151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND  194 (723)
T ss_dssp             CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred             cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC
Confidence            5443333                  7899999999999987653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.28  E-value=8.8e-11  Score=80.45  Aligned_cols=73  Identities=12%  Similarity=0.179  Sum_probs=59.8

Q ss_pred             CeEEEEECCCCCEEEEEe---------------------------------CCCcEEEEEcCCCceeEEeC--CCCCcee
Q psy14458         50 PVSALCVDPSGRLMVSGH---------------------------------EDSSCVLYDIRGSRPLQTFK--PHTADVR   94 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~---------------------------------~~~~i~~~d~~~~~~~~~~~--~~~~~v~   94 (125)
                      .+.+++|+|++++|+.++                                 .+..|++||+.+++......  .+...+.
T Consensus       182 ~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  261 (706)
T 2z3z_A          182 IEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLT  261 (706)
T ss_dssp             CCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEE
T ss_pred             CCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEe
Confidence            468899999999999887                                 44679999998887544332  4667799


Q ss_pred             EEEEccCCCeEEEeecCC-----eEEEEeCCCC
Q psy14458         95 SIRFSPSAYYLLTGGYDN-----KLVLTDLQGT  122 (125)
Q Consensus        95 ~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~  122 (125)
                      ++.|+|||+.++.++.++     .|.+||+.++
T Consensus       262 ~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          262 NLSWSPDENILYVAEVNRAQNECKVNAYDAETG  294 (706)
T ss_dssp             EEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred             eEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence            999999999999988776     8999999876

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.25  E-value=6.5e-11  Score=81.10  Aligned_cols=82  Identities=15%  Similarity=0.121  Sum_probs=61.9

Q ss_pred             CCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-----C
Q psy14458          6 EDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG-----S   80 (125)
Q Consensus         6 ~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~-----~   80 (125)
                      .|+.|++||+.+++...... +.                    ..+..++|+|+++.++.+ .++.|++||+.+     +
T Consensus        99 ~~~~i~~~d~~~~~~~~l~~-~~--------------------~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g  156 (706)
T 2z3z_A           99 TQGGLVGFDMLARKVTYLFD-TN--------------------EETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS  156 (706)
T ss_dssp             ETTEEEEEETTTTEEEEEEC-CT--------------------TCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred             ECCEEEEEECCCCceEEccC-Cc--------------------ccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence            45889999998776544333 33                    456778999999999885 679999999988     7


Q ss_pred             ceeEEeCCCCCc--------------eeEEEEccCCCeEEEee
Q psy14458         81 RPLQTFKPHTAD--------------VRSIRFSPSAYYLLTGG  109 (125)
Q Consensus        81 ~~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~~  109 (125)
                      +.......+...              +.++.|+|||++|+.++
T Consensus       157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~  199 (706)
T 2z3z_A          157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYR  199 (706)
T ss_dssp             CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEE
T ss_pred             CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEE
Confidence            655434333332              47899999999999987

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.22  E-value=1.6e-10  Score=73.05  Aligned_cols=72  Identities=13%  Similarity=0.222  Sum_probs=54.9

Q ss_pred             CCeEEEEECCCCCEEEEEe-CCCcEEEEEcCC-C--ceeEEeCC---------CCCceeEEEEccCCCeEEEeecCCeEE
Q psy14458         49 SPVSALCVDPSGRLMVSGH-EDSSCVLYDIRG-S--RPLQTFKP---------HTADVRSIRFSPSAYYLLTGGYDNKLV  115 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~-~~~~i~~~d~~~-~--~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~d~~i~  115 (125)
                      ..+..++|+|+++++++++ .++.+.+|++.. +  +.+..+..         ....+.++.|+|+++++++...++.+.
T Consensus        86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~  165 (347)
T 3hfq_A           86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVY  165 (347)
T ss_dssp             CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEE
Confidence            5678899999999888877 778999999963 2  23333321         122478899999999777777789999


Q ss_pred             EEeCC
Q psy14458        116 LTDLQ  120 (125)
Q Consensus       116 ~~~~~  120 (125)
                      +|++.
T Consensus       166 ~~~~~  170 (347)
T 3hfq_A          166 VYNVS  170 (347)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99987

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.22  E-value=7.2e-10  Score=70.40  Aligned_cols=99  Identities=11%  Similarity=0.222  Sum_probs=67.5

Q ss_pred             ecCCCeEEEEECCCCcc--eeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCC--CcEEEEEcC-
Q psy14458          4 GHEDSSCVLYDIRGSRP--LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHED--SSCVLYDIR-   78 (125)
Q Consensus         4 ~~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~i~~~d~~-   78 (125)
                      ...++.|.+|++.+++.  +..+....                 .+......++|+|++++++.+..+  +.|.+|++. 
T Consensus       229 ~~~~~~v~v~~~~~g~~~~~~~~~~~~-----------------~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~  291 (361)
T 3scy_A          229 NEIGGTVIAFRYADGMLDEIQTVAADT-----------------VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDE  291 (361)
T ss_dssp             ETTTCEEEEEEEETTEEEEEEEEESCS-----------------SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECT
T ss_pred             cCCCCeEEEEEecCCceEEeEEEecCC-----------------CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcC
Confidence            33578888888876543  22221111                 111456799999999988766654  889999985 


Q ss_pred             -CCc--eeEEeCCCCCceeEEEEccCCCeEEEee-cCCeEEEEeCC
Q psy14458         79 -GSR--PLQTFKPHTADVRSIRFSPSAYYLLTGG-YDNKLVLTDLQ  120 (125)
Q Consensus        79 -~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~i~~~~~~  120 (125)
                       +++  .+..+.. ...+.+++|+|+|+++++++ .++.+.+|.+.
T Consensus       292 ~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          292 TNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             TTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence             344  3444444 55678999999999888877 67899996543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.20  E-value=7.8e-10  Score=69.84  Aligned_cols=72  Identities=11%  Similarity=0.223  Sum_probs=56.0

Q ss_pred             CCeEEEEECCCCCEE-EEEeCCCcEEEEEcCC---CceeEEeCCCCCceeEEEEccCCCeEEEeec-CCeEEEEeCC
Q psy14458         49 SPVSALCVDPSGRLM-VSGHEDSSCVLYDIRG---SRPLQTFKPHTADVRSIRFSPSAYYLLTGGY-DNKLVLTDLQ  120 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~-~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~i~~~~~~  120 (125)
                      ..+..++|+|+++++ ++...++.|.+|++..   .+.+..+..+...+..++|+||+++|++++. ++.+.+|++.
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            457889999999977 5556689999999863   2445555556667889999999998888775 5899999543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.19  E-value=3.1e-10  Score=73.31  Aligned_cols=92  Identities=15%  Similarity=0.082  Sum_probs=69.3

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      +++ .++.|++||+.+.........+.                    ..+.++.+.+.  .++.++.||.|.+||+.++.
T Consensus       101 ~v~-~~~~l~v~dv~sl~~~~~~~~~~--------------------~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~  157 (388)
T 1xip_A          101 LVS-TRNALYSLDLEELSEFRTVTSFE--------------------KPVFQLKNVNN--TLVILNSVNDLSALDLRTKS  157 (388)
T ss_dssp             EEE-ESSEEEEEESSSTTCEEEEEECS--------------------SCEEEEEECSS--EEEEEETTSEEEEEETTTCC
T ss_pred             EEE-cCCcEEEEEchhhhccCccceee--------------------cceeeEEecCC--CEEEEECCCCEEEEEccCCc
Confidence            445 88999999998776555555455                    33445444433  28888999999999999776


Q ss_pred             eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         82 PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ...    +...|++++|+|+|  ++.|..||++++|+..+.
T Consensus       158 ~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~  192 (388)
T 1xip_A          158 TKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG  192 (388)
T ss_dssp             EEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETT
T ss_pred             ccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCc
Confidence            543    44679999999999  788999999999977654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.18  E-value=1.7e-09  Score=68.63  Aligned_cols=72  Identities=14%  Similarity=0.226  Sum_probs=55.1

Q ss_pred             CCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCce--eEEeC---CCCCceeEEEEccCCCeEEEeec--CCeEEEEeCC
Q psy14458         49 SPVSALCVDPSGRLMVSGH-EDSSCVLYDIRGSRP--LQTFK---PHTADVRSIRFSPSAYYLLTGGY--DNKLVLTDLQ  120 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~--~~~~~---~~~~~v~~~~~~~~~~~~~~~~~--d~~i~~~~~~  120 (125)
                      .....++|+|++++++.++ .++.|.+|++.+++.  +..+.   .+......++|+|||++++++..  ++.|.+|++.
T Consensus       211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            5678899999999887776 689999999987643  22222   23345679999999998866654  5899999985

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.18  E-value=1.1e-10  Score=80.21  Aligned_cols=83  Identities=17%  Similarity=0.355  Sum_probs=59.6

Q ss_pred             CCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q psy14458          7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTF   86 (125)
Q Consensus         7 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~   86 (125)
                      |+.|++||+.+++.+.... -.                    ..+..++|||+|+.++.+. ++.|++|++.+++.....
T Consensus        89 ~~~i~~~d~~~g~~~~~~~-l~--------------------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~  146 (719)
T 1z68_A           89 TATYYIYDLSNGEFVRGNE-LP--------------------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT  146 (719)
T ss_dssp             EEEEEEEETTTTEECCSSC-CC--------------------SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred             ceEEEEEECCCCcccccee-cC--------------------cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe
Confidence            6889999998876521111 01                    3567899999999999885 789999999887654322


Q ss_pred             -CCCCCce-----------------eEEEEccCCCeEEEeecC
Q psy14458         87 -KPHTADV-----------------RSIRFSPSAYYLLTGGYD  111 (125)
Q Consensus        87 -~~~~~~v-----------------~~~~~~~~~~~~~~~~~d  111 (125)
                       .++...+                 .++.|+|||+.|+.++.|
T Consensus       147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred             cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence             2222212                 489999999999998865

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.16  E-value=3.4e-10  Score=72.42  Aligned_cols=95  Identities=9%  Similarity=0.088  Sum_probs=74.7

Q ss_pred             CCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeC----------CCcEEEE
Q psy14458          6 EDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHE----------DSSCVLY   75 (125)
Q Consensus         6 ~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~~i~~~   75 (125)
                      .|+.|.+||..+++.+..+....                    .+  .++++|++++++.++.          ++.|.+|
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~--------------------~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~   86 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAF--------------------NG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVW   86 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCE--------------------EE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEE
T ss_pred             ccCeEEEEECCCCeEEEEecCCC--------------------CC--ceEECCCCCEEEEEEecccccccCCCCCEEEEE
Confidence            47899999998888776665432                    23  8899999999988863          5679999


Q ss_pred             EcCCCceeEEeCCC------CCceeEEEEccCCCeEEEeec--CCeEEEEeCCCC
Q psy14458         76 DIRGSRPLQTFKPH------TADVRSIRFSPSAYYLLTGGY--DNKLVLTDLQGT  122 (125)
Q Consensus        76 d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~--d~~i~~~~~~~~  122 (125)
                      |..+.+.+..+...      ......+.++|||++++++..  ++.|.+||+.++
T Consensus        87 d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~  141 (361)
T 2oiz_A           87 DADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG  141 (361)
T ss_dssp             ETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT
T ss_pred             ECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC
Confidence            99988877766522      245678999999999988874  688999999865

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.13  E-value=3.2e-09  Score=65.68  Aligned_cols=98  Identities=8%  Similarity=0.158  Sum_probs=79.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++++.|+.|.+||..+++.+..+..+..                   ..+.+++++|++++++  +.++.|..||. ++
T Consensus         8 lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-------------------~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G   65 (276)
T 3no2_A            8 LVGGSGWNKIAIINKDTKEIVWEYPLEKG-------------------WECNSVAATKAGEILF--SYSKGAKMITR-DG   65 (276)
T ss_dssp             EEECTTCSEEEEEETTTTEEEEEEECCTT-------------------CCCCEEEECTTSCEEE--ECBSEEEEECT-TS
T ss_pred             EEeeCCCCEEEEEECCCCeEEEEeCCCcc-------------------CCCcCeEECCCCCEEE--eCCCCEEEECC-CC
Confidence            47889999999999989999988875431                   2567889999999888  35778999998 88


Q ss_pred             ceeEEeCCCC-CceeEEEEccCCCeEEEeec-CCeEEEEeCC
Q psy14458         81 RPLQTFKPHT-ADVRSIRFSPSAYYLLTGGY-DNKLVLTDLQ  120 (125)
Q Consensus        81 ~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~-d~~i~~~~~~  120 (125)
                      +.+..+.... ..+.++.+.|+|+++++.+. ++.+..+|..
T Consensus        66 ~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~  107 (276)
T 3no2_A           66 RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK  107 (276)
T ss_dssp             CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT
T ss_pred             CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC
Confidence            8888888643 46888999999999999887 7777777653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.12  E-value=5.5e-09  Score=70.61  Aligned_cols=99  Identities=19%  Similarity=0.202  Sum_probs=80.5

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC--C
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR--G   79 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~--~   79 (125)
                      ++...+++|.++|..+++.+..+...                     .....+.++|+++++++++.++.|.+||+.  +
T Consensus       171 V~~~~~~~V~viD~~t~~v~~~i~~g---------------------~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t  229 (567)
T 1qks_A          171 VTLRDAGQIALIDGSTYEIKTVLDTG---------------------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE  229 (567)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEECS---------------------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             EEeCCCCeEEEEECCCCeEEEEEeCC---------------------CCccceEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence            45677899999999998888777632                     356789999999999999999999999995  7


Q ss_pred             CceeEEeCCCCCceeEEEEc----cCCCeEEEeec-CCeEEEEeCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFS----PSAYYLLTGGY-DNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~-d~~i~~~~~~~~  122 (125)
                      ++.+..+... .....+.|+    |||+++++++. ++++.++|..+.
T Consensus       230 ~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~  276 (567)
T 1qks_A          230 PTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  276 (567)
T ss_dssp             CCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             CcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence            7777777643 345789999    69998888775 699999997664

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.10  E-value=6.9e-09  Score=66.25  Aligned_cols=99  Identities=8%  Similarity=0.082  Sum_probs=68.4

Q ss_pred             CCCeEEEEECCC-CcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcC-CCce
Q psy14458          6 EDSSCVLYDIRG-SRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHE-DSSCVLYDIR-GSRP   82 (125)
Q Consensus         6 ~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~d~~-~~~~   82 (125)
                      .++.+.+|++.. ++....+...       .         ..+...+.+++|+|+++++++++. ++.|++|++. +++.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~-------~---------~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~  180 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNY-------E---------YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV  180 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEE-------E---------CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE
T ss_pred             CCceEEEEccCCCCcCcceEeeE-------E---------eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE
Confidence            578888888863 4433222210       0         001257889999999998877654 6789999998 6654


Q ss_pred             e--EEeC--CCCCceeEEEEccCCCeEEEeec-CCeEEEEeCC
Q psy14458         83 L--QTFK--PHTADVRSIRFSPSAYYLLTGGY-DNKLVLTDLQ  120 (125)
Q Consensus        83 ~--~~~~--~~~~~v~~~~~~~~~~~~~~~~~-d~~i~~~~~~  120 (125)
                      .  ..+.  .+...+.++.|+|||+++++++. ++.+.+|++.
T Consensus       181 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  223 (365)
T 1jof_A          181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence            2  2333  24567899999999998887764 7899999764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.06  E-value=2.8e-09  Score=67.20  Aligned_cols=103  Identities=16%  Similarity=0.175  Sum_probs=75.4

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECC------CCCEEEEEeCCCcEEEE
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP------SGRLMVSGHEDSSCVLY   75 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~i~~~   75 (125)
                      ++...+++|++||..+++.+..+....                  ....+..++++|      +++..++...+..+++|
T Consensus       212 v~d~~~~~I~~~~~~~G~~~~~~~~~~------------------~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~  273 (329)
T 3fvz_A          212 VADRENGRIQCFKTDTKEFVREIKHAS------------------FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVM  273 (329)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECCTT------------------TTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEE
T ss_pred             EEECCCCEEEEEECCCCcEEEEEeccc------------------cCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEE
Confidence            455667888899988777776664321                  114566777777      33333333455689999


Q ss_pred             EcCCCceeEEeC---CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         76 DIRGSRPLQTFK---PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        76 d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +..+++.+..+.   .+...+..++++|+|.++++...++.|++|++...
T Consensus       274 ~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          274 NFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             ETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             EcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            999999888874   56667899999999988899999999999998643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.05  E-value=1.8e-08  Score=62.03  Aligned_cols=72  Identities=7%  Similarity=0.219  Sum_probs=56.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCCC-cEEEEEcCCCceeEEeCCCC--CceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDS-SCVLYDIRGSRPLQTFKPHT--ADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ..+..+++++++.++++...++ .|.+||. +++.+..+..+.  ..+..++++|+|+++++ +.|+.|++|++...
T Consensus       207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          207 NYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             CSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            4678999999999888887776 9999995 455555554332  34678999999987777 57999999998653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.04  E-value=2.9e-09  Score=72.55  Aligned_cols=74  Identities=12%  Similarity=0.096  Sum_probs=55.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCC--------CcEEEEEcC-CC---ceeEEeCCCCCceeEEEEccCCCeEEEeecCC--eE
Q psy14458         49 SPVSALCVDPSGRLMVSGHED--------SSCVLYDIR-GS---RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN--KL  114 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~--------~~i~~~d~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~--~i  114 (125)
                      ..+..++|+|+++.|+.++.+        ..|++||+. ++   +.......+...+..+.|+|||++++++..++  .|
T Consensus       188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l  267 (662)
T 3azo_A          188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNL  267 (662)
T ss_dssp             SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEE
T ss_pred             CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEE
Confidence            566778999999999877744        379999998 56   33333344567889999999999888887788  56


Q ss_pred             EEEeCCCC
Q psy14458        115 VLTDLQGT  122 (125)
Q Consensus       115 ~~~~~~~~  122 (125)
                      ..||+.++
T Consensus       268 ~~~~~~~~  275 (662)
T 3azo_A          268 HRVDPATG  275 (662)
T ss_dssp             EEECTTTC
T ss_pred             EEEECCCC
Confidence            66666443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.99  E-value=7.6e-09  Score=66.06  Aligned_cols=70  Identities=19%  Similarity=0.166  Sum_probs=57.6

Q ss_pred             EEECCCCCEEEEEeC-CCc--EEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         54 LCVDPSGRLMVSGHE-DSS--CVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        54 ~~~~~~~~~~~~~~~-~~~--i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+|+|+++.++..+. ++.  |.+||+.+++.......+...+....|+||++.|+.++.++.+++||+.++.
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~  113 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE  113 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            689999998888877 663  8889998888766555555555578899999999999999999999998764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.98  E-value=1e-08  Score=70.57  Aligned_cols=98  Identities=5%  Similarity=-0.038  Sum_probs=68.7

Q ss_pred             eecCCCeEEEEECCCCcce-eeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCc----------
Q psy14458          3 SGHEDSSCVLYDIRGSRPL-QTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSS----------   71 (125)
Q Consensus         3 t~~~d~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----------   71 (125)
                      .|+.+..|++||+.+++.+ .... ..                    .....++|+|+++.|+.++.+..          
T Consensus       142 ~G~~~~~i~v~dl~tg~~~~~~~~-~~--------------------~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~  200 (695)
T 2bkl_A          142 NAADEAVLHVIDVDSGEWSKVDVI-EG--------------------GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPG  200 (695)
T ss_dssp             TTCSCCEEEEEETTTCCBCSSCCB-SC--------------------CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGG
T ss_pred             CCCceEEEEEEECCCCCCcCCccc-Cc--------------------ccccceEEecCCCEEEEEEecCCCCCccccCCC
Confidence            3455678999998887754 1100 00                    11257899999999999888766          


Q ss_pred             ---EEEEEcCCCc----eeEEeCCCCCceeEEEEccCCCeEEEeecCC----eEEEEeCCC
Q psy14458         72 ---CVLYDIRGSR----PLQTFKPHTADVRSIRFSPSAYYLLTGGYDN----KLVLTDLQG  121 (125)
Q Consensus        72 ---i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~----~i~~~~~~~  121 (125)
                         |++|++.+++    .+.....+...+..+.|+|||++|+..+.++    .|.+++..+
T Consensus       201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~  261 (695)
T 2bkl_A          201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE  261 (695)
T ss_dssp             GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC
T ss_pred             CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC
Confidence               9999998875    2333334556788999999999998887665    677776543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.96  E-value=1.9e-08  Score=63.16  Aligned_cols=74  Identities=14%  Similarity=0.153  Sum_probs=60.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecC----CeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD----NKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d----~~i~~~~~~~~  122 (125)
                      ..+.+++|++++.+++++..++.|++||..+++.......+...+.++.++|+++++++...+    +.|.+||..++
T Consensus        45 ~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           45 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  122 (333)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             ccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence            567899999999988888889999999998877554443456779999999999988887766    68999998765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.96  E-value=3.8e-09  Score=67.44  Aligned_cols=70  Identities=14%  Similarity=0.219  Sum_probs=51.6

Q ss_pred             eEEEEECCCCCE--EEEEe-------------CCCcEEEEEcCC-CceeEEeC----CCCCceeEEEEccCCCeEEEee-
Q psy14458         51 VSALCVDPSGRL--MVSGH-------------EDSSCVLYDIRG-SRPLQTFK----PHTADVRSIRFSPSAYYLLTGG-  109 (125)
Q Consensus        51 i~~~~~~~~~~~--~~~~~-------------~~~~i~~~d~~~-~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~-  109 (125)
                      ...++++|++++  +++++             .++.+.+|++.. ++....+.    .+...+.++.|+|||++++++. 
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~  164 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL  164 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence            445789999984  45553             688999999973 55433332    2456788999999999887765 


Q ss_pred             cCCeEEEEeCC
Q psy14458        110 YDNKLVLTDLQ  120 (125)
Q Consensus       110 ~d~~i~~~~~~  120 (125)
                      .++.|.+|++.
T Consensus       165 ~~~~v~~~~~~  175 (365)
T 1jof_A          165 TANKLWTHRKL  175 (365)
T ss_dssp             TTTEEEEEEEC
T ss_pred             CCCEEEEEEEC
Confidence            47899999987

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.95  E-value=9.1e-09  Score=66.56  Aligned_cols=81  Identities=16%  Similarity=0.127  Sum_probs=65.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      ++++..||.+.+||+..+.... +   .                    ..++|++|+|+|  ++.|..||.+++|+....
T Consensus       139 ~av~~~dG~L~v~dl~~~~~~~-~---~--------------------~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~  192 (388)
T 1xip_A          139 LVILNSVNDLSALDLRTKSTKQ-L---A--------------------QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG  192 (388)
T ss_dssp             EEEEETTSEEEEEETTTCCEEE-E---E--------------------ESEEEEEECSSE--EEEEETTSCEEEEEEETT
T ss_pred             EEEEECCCCEEEEEccCCcccc-c---c--------------------CCceEEEEcCCc--eEEEEcCCcEEEEcCCCc
Confidence            4678899999999998766532 1   1                    578999999999  677889999999988777


Q ss_pred             ce--eEEe------C---CCCCceeEEEEccCCCeEEE
Q psy14458         81 RP--LQTF------K---PHTADVRSIRFSPSAYYLLT  107 (125)
Q Consensus        81 ~~--~~~~------~---~~~~~v~~~~~~~~~~~~~~  107 (125)
                      +.  ...+      .   .|...|.++.|.+++.++++
T Consensus       193 ~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          193 EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            64  4455      2   36788999999999998887

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.94  E-value=2.9e-08  Score=63.37  Aligned_cols=95  Identities=11%  Similarity=-0.003  Sum_probs=67.3

Q ss_pred             eEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCC
Q psy14458          9 SCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKP   88 (125)
Q Consensus         9 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~   88 (125)
                      .|.+||+.+++......++.                    ..+...+|+|+++.|+.+..++.|++||+.+++.......
T Consensus        61 ~l~~~d~~~g~~~~lt~~~~--------------------~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           61 NYYLLDLNTQVATQLTEGRG--------------------DNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             EEEEEETTTCEEEECCCSSC--------------------BCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEeCCCCceEEeeeCCC--------------------CCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            36777777666554444333                    3334567999999999999999999999999887666665


Q ss_pred             CCCceeEEE--EccCCCeEEEe----------------------ecCCeEEEEeCCCCC
Q psy14458         89 HTADVRSIR--FSPSAYYLLTG----------------------GYDNKLVLTDLQGTM  123 (125)
Q Consensus        89 ~~~~v~~~~--~~~~~~~~~~~----------------------~~d~~i~~~~~~~~~  123 (125)
                      +...+....  ++|++..++..                      ..+..|.+||+.++.
T Consensus       121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (388)
T 3pe7_A          121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE  179 (388)
T ss_dssp             CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred             hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence            555554443  48899888742                      234679999988763

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.92  E-value=1.2e-07  Score=58.39  Aligned_cols=72  Identities=11%  Similarity=0.201  Sum_probs=58.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCC--CCceeEEEEccCCCeEEEeecCC-eEEEEeCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPH--TADVRSIRFSPSAYYLLTGGYDN-KLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~-~i~~~~~~~  121 (125)
                      ..+..++++++++++++...++.|++||. .++.+..+..+  ...+..++++|+|+++++...++ .|.+|+...
T Consensus       164 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g  238 (286)
T 1q7f_A          164 EFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG  238 (286)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred             CCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC
Confidence            46789999999998888888999999997 45555566533  35688999999999888888886 999999654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.91  E-value=1.8e-08  Score=69.51  Aligned_cols=92  Identities=14%  Similarity=0.128  Sum_probs=66.6

Q ss_pred             eEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCc----------------E
Q psy14458          9 SCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSS----------------C   72 (125)
Q Consensus         9 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----------------i   72 (125)
                      .|++||+.+++........                     ..+..++|+|+++.|+.+..++.                |
T Consensus       152 ~i~v~d~~tg~~~~~~~~~---------------------~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v  210 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVLER---------------------VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL  210 (710)
T ss_dssp             EEEEEETTTTEEEEEEEEE---------------------ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred             EEEEEECCCCCCCcccccC---------------------cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEE
Confidence            7888888777654422111                     22567899999999988887765                9


Q ss_pred             EEEEcCCCce--eEEeC--CCCCceeEEEEccCCCeEEEeec-----CCeEEEEeCCC
Q psy14458         73 VLYDIRGSRP--LQTFK--PHTADVRSIRFSPSAYYLLTGGY-----DNKLVLTDLQG  121 (125)
Q Consensus        73 ~~~d~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~~~~~-----d~~i~~~~~~~  121 (125)
                      ++|++.+++.  ...+.  .+...+..+.|+|||++|+..+.     +..+.+||+.+
T Consensus       211 ~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          211 YYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             EEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence            9999988652  22233  34556788999999999887764     56899999875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.89  E-value=8.5e-08  Score=58.38  Aligned_cols=75  Identities=9%  Similarity=0.049  Sum_probs=58.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..+..+++++++.++++...++.|.+|+............+...+..++++|+|+++++...++.|.++++....
T Consensus       192 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          192 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            567899999999888887788899999986654333222233568899999999988999999999999987543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.89  E-value=1.9e-07  Score=58.62  Aligned_cols=73  Identities=12%  Similarity=0.093  Sum_probs=53.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCC----CcEEEEEcCCCceeEEeC--CCCCceeEEEEccCCCeEEEeec------CCeEEE
Q psy14458         49 SPVSALCVDPSGRLMVSGHED----SSCVLYDIRGSRPLQTFK--PHTADVRSIRFSPSAYYLLTGGY------DNKLVL  116 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~------d~~i~~  116 (125)
                      ..+.+++++|++.++++...+    +.|.+||..+++....+.  .....+..+.++|+++++++...      .+.|..
T Consensus        87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~  166 (333)
T 2dg1_A           87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYY  166 (333)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEE
T ss_pred             CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEE
Confidence            578999999999988887666    689999988766543332  23456889999999988887654      355666


Q ss_pred             EeCCC
Q psy14458        117 TDLQG  121 (125)
Q Consensus       117 ~~~~~  121 (125)
                      +|..+
T Consensus       167 ~~~~~  171 (333)
T 2dg1_A          167 VSPDF  171 (333)
T ss_dssp             ECTTS
T ss_pred             EeCCC
Confidence            66554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.87  E-value=1.8e-07  Score=58.95  Aligned_cols=73  Identities=12%  Similarity=0.215  Sum_probs=57.7

Q ss_pred             CCeEEEEECC-CCCEEEEEe-CCCcEEEEEcCCCceeEEeCC----------CCCceeEEEEccC-CCeEEEeecCCeEE
Q psy14458         49 SPVSALCVDP-SGRLMVSGH-EDSSCVLYDIRGSRPLQTFKP----------HTADVRSIRFSPS-AYYLLTGGYDNKLV  115 (125)
Q Consensus        49 ~~i~~~~~~~-~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~~~~~~~d~~i~  115 (125)
                      .....++++| ++.++++.+ .++.|++|+ .+++.+..+..          +-.....++++|+ +.++++...++.|+
T Consensus       143 ~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~  221 (329)
T 3fvz_A          143 CQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQ  221 (329)
T ss_dssp             SSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEE
Confidence            4678999999 788888876 689999999 56666666642          2234788999998 88888888999999


Q ss_pred             EEeCCCC
Q psy14458        116 LTDLQGT  122 (125)
Q Consensus       116 ~~~~~~~  122 (125)
                      +|+..++
T Consensus       222 ~~~~~~G  228 (329)
T 3fvz_A          222 CFKTDTK  228 (329)
T ss_dssp             EEETTTC
T ss_pred             EEECCCC
Confidence            9998743

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.86  E-value=2.6e-08  Score=69.04  Aligned_cols=82  Identities=10%  Similarity=0.163  Sum_probs=56.6

Q ss_pred             CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEE-e
Q psy14458          8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQT-F   86 (125)
Q Consensus         8 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~   86 (125)
                      +.+.+||+.+++... +..+.                    ..+...+|||+|+.++.+. ++.|++|++.+++.... .
T Consensus        92 ~~~~~~d~~~~~~~~-l~~~~--------------------~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~  149 (740)
T 4a5s_A           92 ASYDIYDLNKRQLIT-EERIP--------------------NNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITW  149 (740)
T ss_dssp             EEEEEEETTTTEECC-SSCCC--------------------TTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCS
T ss_pred             eEEEEEECCCCcEEE-cccCC--------------------CcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcC
Confidence            445678877766432 33333                    5788999999999998884 68899999987764432 2


Q ss_pred             CCCCCce-----------------eEEEEccCCCeEEEeecC
Q psy14458         87 KPHTADV-----------------RSIRFSPSAYYLLTGGYD  111 (125)
Q Consensus        87 ~~~~~~v-----------------~~~~~~~~~~~~~~~~~d  111 (125)
                      .++...+                 ..+.|+|||+.|+..+.|
T Consensus       150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d  191 (740)
T 4a5s_A          150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (740)
T ss_dssp             CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEc
Confidence            2222222                 358999999999987643

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.81  E-value=6.9e-08  Score=60.81  Aligned_cols=59  Identities=14%  Similarity=0.263  Sum_probs=44.3

Q ss_pred             CeEEEEECCCCCEEEEEeCC---C--cEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec
Q psy14458         50 PVSALCVDPSGRLMVSGHED---S--SCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY  110 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~---~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  110 (125)
                      .+..++|+|+++.++..+.+   +  .|++|++.+++...... +.. +..+.|+||++.|+.++.
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~  123 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWNEDSRKLLIVGF  123 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEECTTSSEEEEEEE
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeECCCCCEEEEEEc
Confidence            46788999999988877653   2  38888888776554443 233 889999999998888764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.81  E-value=7.9e-08  Score=65.54  Aligned_cols=72  Identities=15%  Similarity=0.124  Sum_probs=52.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCC--cEEEEEcCCCceeEEeCCCCCc--------eeEEEEccCCCeEEEeecCCeEEEE-
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDS--SCVLYDIRGSRPLQTFKPHTAD--------VRSIRFSPSAYYLLTGGYDNKLVLT-  117 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~~~~~d~~i~~~-  117 (125)
                      ..+..++|+|+++++++++.++  .|++||..+++.......+...        +..+.|+|+++++++++. +.+.+| 
T Consensus       242 ~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  320 (662)
T 3azo_A          242 EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI  320 (662)
T ss_dssp             BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred             ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence            5778999999999888888888  5666666555543322222221        567899999999999988 888888 


Q ss_pred             -eCCC
Q psy14458        118 -DLQG  121 (125)
Q Consensus       118 -~~~~  121 (125)
                       |+.+
T Consensus       321 ~d~~~  325 (662)
T 3azo_A          321 LDPES  325 (662)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence             5543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.77  E-value=1.3e-07  Score=61.22  Aligned_cols=95  Identities=14%  Similarity=0.147  Sum_probs=73.5

Q ss_pred             CCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEE
Q psy14458          7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH----------EDSSCVLYD   76 (125)
Q Consensus         7 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~i~~~d   76 (125)
                      ++.|.+.|..+++.+..+..-.                    .+ . ++++|+++.++.++          .++.|.+||
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~--------------------~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGF--------------------LP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECS--------------------SC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCEEEEEECCCCeEEEEEECCC--------------------CC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            5789999999888887776433                    23 4 99999998887765          367899999


Q ss_pred             cCCCceeEEeCCC-------CCceeEEEEccCCCeEEEeec--CCeEEEEeCCCCC
Q psy14458         77 IRGSRPLQTFKPH-------TADVRSIRFSPSAYYLLTGGY--DNKLVLTDLQGTM  123 (125)
Q Consensus        77 ~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~--d~~i~~~~~~~~~  123 (125)
                      ..+.+.+..+...       ......+.++|||++++.+..  ++.|.++|+.++.
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~  171 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA  171 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc
Confidence            9999888776421       124567999999998888764  6899999998763

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.77  E-value=1.6e-07  Score=60.07  Aligned_cols=73  Identities=15%  Similarity=0.270  Sum_probs=61.3

Q ss_pred             CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC--ceeEE
Q psy14458          8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS--RPLQT   85 (125)
Q Consensus         8 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~   85 (125)
                      +.|.+||+.+++.+..+..+                     . ...++|+|+++++++++. +.|.+||..++  +.+..
T Consensus       286 ~~v~viD~~t~~~v~~i~~~---------------------~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~  342 (361)
T 2oiz_A          286 AEIWVMDTKTKQRVARIPGR---------------------D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT  342 (361)
T ss_dssp             SEEEEEETTTTEEEEEEECT---------------------T-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred             ceEEEEECCCCcEEEEEecC---------------------C-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence            47888898888877776533                     3 678999999999998887 99999999999  88888


Q ss_pred             eCCCCCceeEEEEccCCC
Q psy14458         86 FKPHTADVRSIRFSPSAY  103 (125)
Q Consensus        86 ~~~~~~~v~~~~~~~~~~  103 (125)
                      +.......+.+.++|+|.
T Consensus       343 i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          343 IEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ETTSCSSEEEEEECCCSC
T ss_pred             eccCCCCcEEEEecCCCC
Confidence            766777788899999985

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.73  E-value=9.6e-07  Score=54.78  Aligned_cols=74  Identities=15%  Similarity=0.227  Sum_probs=59.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeE-EEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYL-LTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~  122 (125)
                      .....+++++++.++++...++.|.+||..+++....+..+...+.+++++|+++.+ ++...++.|..+++...
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            346789999999988888788999999988777666666566778999999999844 55556788999998753

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.72  E-value=4.9e-07  Score=57.04  Aligned_cols=95  Identities=8%  Similarity=0.003  Sum_probs=71.1

Q ss_pred             CCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCC----------CcEEEE
Q psy14458          6 EDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHED----------SSCVLY   75 (125)
Q Consensus         6 ~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~i~~~   75 (125)
                      .++.|.++|+.+++.+..+...                     .....++++|+++++++...+          +.|.++
T Consensus       150 ~~~~v~viD~~t~~~~~~i~~g---------------------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i  208 (328)
T 3dsm_A          150 YQNRILKIDTETDKVVDELTIG---------------------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI  208 (328)
T ss_dssp             TCCEEEEEETTTTEEEEEEECS---------------------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEEcC---------------------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence            4778889998888776655432                     334678889999877776654          789999


Q ss_pred             EcCCCceeEEeCCC-CCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         76 DIRGSRPLQTFKPH-TADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        76 d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      |..+++....+... ......++++|+++.+..+..  .+.++|..++.
T Consensus       209 d~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~  255 (328)
T 3dsm_A          209 DAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADR  255 (328)
T ss_dssp             ETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred             ECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence            99988877666522 346789999999888877655  89999987653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.72  E-value=2.2e-07  Score=59.30  Aligned_cols=75  Identities=13%  Similarity=0.053  Sum_probs=51.6

Q ss_pred             CCCeEEEEECC-CCCEEEEEeCC------CcEEEEEcCCCceeEEeCCC--CCceeEEEEccCCCeEEEeecC-----Ce
Q psy14458         48 GSPVSALCVDP-SGRLMVSGHED------SSCVLYDIRGSRPLQTFKPH--TADVRSIRFSPSAYYLLTGGYD-----NK  113 (125)
Q Consensus        48 ~~~i~~~~~~~-~~~~~~~~~~~------~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d-----~~  113 (125)
                      ...+..+.|+| ++..++..+.+      ..|.+||+..++.. .+..+  ...+..+.|+|+|+.|+..+.+     +.
T Consensus       187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  265 (396)
T 3c5m_A          187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV  265 (396)
T ss_dssp             SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred             CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccce
Confidence            35678889999 77766665443      35888887655433 23323  2357789999999988777554     45


Q ss_pred             EEEEeCCCCC
Q psy14458        114 LVLTDLQGTM  123 (125)
Q Consensus       114 i~~~~~~~~~  123 (125)
                      |++||+.++.
T Consensus       266 l~~~d~~~g~  275 (396)
T 3c5m_A          266 IYKANPETLE  275 (396)
T ss_dssp             EEEECTTTCC
T ss_pred             EEEEECCCCC
Confidence            9999997653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.72  E-value=8.7e-07  Score=57.09  Aligned_cols=92  Identities=13%  Similarity=0.006  Sum_probs=68.1

Q ss_pred             eEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEEcC
Q psy14458          9 SCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH----------EDSSCVLYDIR   78 (125)
Q Consensus         9 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~i~~~d~~   78 (125)
                      .|.++|..+++.+..+...                     ..- .++++|++++++.+.          .++.|.++|..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g---------------------~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGG---------------------FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             EEEEEECCCCeEEEEecCC---------------------CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            7788888877766555422                     222 889999999988876          36789999999


Q ss_pred             CCceeEEeCCC-------CCceeEEEEccCCCeEEEeec--CCeEEEEeCCCCC
Q psy14458         79 GSRPLQTFKPH-------TADVRSIRFSPSAYYLLTGGY--DNKLVLTDLQGTM  123 (125)
Q Consensus        79 ~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~--d~~i~~~~~~~~~  123 (125)
                      +.+.+..+...       ......+.++|||++++.++.  +..|.++| .++.
T Consensus       106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~  158 (373)
T 2mad_H          106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS  158 (373)
T ss_pred             CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC
Confidence            88777665421       123457999999999998874  57899999 7653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.69  E-value=7.3e-07  Score=54.23  Aligned_cols=74  Identities=15%  Similarity=0.140  Sum_probs=57.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ..+.+++++++++++++...++.|.+||................+..++++++|.++++...++.|..|+..+.
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            35778999999998787777889999998766544322233356789999999988888778889999998654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.67  E-value=1.8e-07  Score=59.67  Aligned_cols=72  Identities=13%  Similarity=0.127  Sum_probs=53.8

Q ss_pred             eEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeEEeCCCCCce-eEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         51 VSALCVDPSGRLMVSGHED---SSCVLYDIRGSRPLQTFKPHTADV-RSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +..++|+|+++.++.....   ..|.+||+.+++... +..+...+ ....|+|||+.|+..+.++.+++||+.++.
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~  113 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE  113 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence            5677899999988776543   368888988776544 33333333 347899999999999999999999987653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.66  E-value=3.1e-07  Score=60.19  Aligned_cols=93  Identities=14%  Similarity=0.129  Sum_probs=73.1

Q ss_pred             CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEEc
Q psy14458          8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH----------EDSSCVLYDI   77 (125)
Q Consensus         8 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~i~~~d~   77 (125)
                      +.|.++|+.+++.+..+..-.                    .+  .++++|+++.++.++          .++.|.++|.
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~--------------------~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGF--------------------LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECS--------------------SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CeEEEEECCCCEEEEEEECCC--------------------CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence            689999999888887776433                    34  899999998887776          4678999999


Q ss_pred             CCCceeEEeCCC-------CCceeEEEEccCCCeEEEeec--CCeEEEEeCCCC
Q psy14458         78 RGSRPLQTFKPH-------TADVRSIRFSPSAYYLLTGGY--DNKLVLTDLQGT  122 (125)
Q Consensus        78 ~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~--d~~i~~~~~~~~  122 (125)
                      .+.+.+..+..-       ......+.++|||++++.+..  ++.|.+.|+.+.
T Consensus       157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~  210 (426)
T 3c75_H          157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK  210 (426)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred             CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC
Confidence            999887776421       123467899999999988764  678999999875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.65  E-value=7.9e-07  Score=55.01  Aligned_cols=72  Identities=8%  Similarity=-0.003  Sum_probs=60.7

Q ss_pred             CCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGR-LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ....+++|+|+++ +++++..++.|+.|+..++  ...+..+...+.++.++|+|+++++...++.|.+||..++
T Consensus        28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g  100 (296)
T 3e5z_A           28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG  100 (296)
T ss_dssp             SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred             ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence            5678999999998 7888888999999998877  5556656777899999999998888877889999998654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.65  E-value=1.2e-06  Score=55.31  Aligned_cols=99  Identities=8%  Similarity=0.042  Sum_probs=71.4

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      ++...++.|.+||..+++.+..+.. .                    .....+++++++..+++...++.|.++|..+++
T Consensus        58 v~~~~~~~v~viD~~t~~~~~~i~~-~--------------------~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~  116 (328)
T 3dsm_A           58 IVVNNSHVIFAIDINTFKEVGRITG-F--------------------TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE  116 (328)
T ss_dssp             EEEGGGTEEEEEETTTCCEEEEEEC-C--------------------SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE
T ss_pred             EEEcCCCEEEEEECcccEEEEEcCC-C--------------------CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe
Confidence            3445678999999999888777742 2                    467788998888544444478999999999988


Q ss_pred             eeEEeCCCC-----CceeEEEEccCCCeEEEee-cCCeEEEEeCCCC
Q psy14458         82 PLQTFKPHT-----ADVRSIRFSPSAYYLLTGG-YDNKLVLTDLQGT  122 (125)
Q Consensus        82 ~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~  122 (125)
                      ....+....     .....+.+ .+++++++.. .++.|.++|+.++
T Consensus       117 ~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~  162 (328)
T 3dsm_A          117 ITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD  162 (328)
T ss_dssp             EEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT
T ss_pred             EEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC
Confidence            776665322     14556777 4555556654 4899999998865

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.64  E-value=1.2e-06  Score=54.15  Aligned_cols=84  Identities=11%  Similarity=0.115  Sum_probs=60.0

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      +++..++.|..||..++  ...+..+.                    ..+.++++++++.++++...++.|.+||..+++
T Consensus        44 ~~~~~~~~i~~~~~~~~--~~~~~~~~--------------------~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~  101 (296)
T 3e5z_A           44 FSDVRQNRTWAWSDDGQ--LSPEMHPS--------------------HHQNGHCLNKQGHLIACSHGLRRLERQREPGGE  101 (296)
T ss_dssp             EEEGGGTEEEEEETTSC--EEEEESSC--------------------SSEEEEEECTTCCEEEEETTTTEEEEECSTTCC
T ss_pred             EEeCCCCEEEEEECCCC--eEEEECCC--------------------CCcceeeECCCCcEEEEecCCCeEEEEcCCCCc
Confidence            45566777888887655  34443333                    568899999999988887777899999987776


Q ss_pred             eeEEeCCC----CCceeEEEEccCCCeEEE
Q psy14458         82 PLQTFKPH----TADVRSIRFSPSAYYLLT  107 (125)
Q Consensus        82 ~~~~~~~~----~~~v~~~~~~~~~~~~~~  107 (125)
                      ........    ...+..+.++|+|+++++
T Consensus       102 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~vt  131 (296)
T 3e5z_A          102 WESIADSFEGKKLNSPNDVCLAPDGSLWFS  131 (296)
T ss_dssp             EEEEECEETTEECCCCCCEEECTTSCEEEE
T ss_pred             EEEEeeccCCCCCCCCCCEEECCCCCEEEE
Confidence            44332211    234678999999998887

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.62  E-value=2.3e-07  Score=59.71  Aligned_cols=90  Identities=12%  Similarity=-0.039  Sum_probs=70.1

Q ss_pred             eEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEEcC
Q psy14458          9 SCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH----------EDSSCVLYDIR   78 (125)
Q Consensus         9 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~i~~~d~~   78 (125)
                      .|.+.|..+++.+..+....                    .+  .+.++|++++++.++          .++.|.+||..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~--------------------~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~  104 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAF--------------------LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV  104 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECT--------------------TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred             eEEEEECCCCeEEEEEeCCC--------------------CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            78888988888887776433                    34  799999998888876          36889999999


Q ss_pred             CCceeEEeCCC-------CCceeEEEEccCCCeEEEeec--CCeEEE--EeCC
Q psy14458         79 GSRPLQTFKPH-------TADVRSIRFSPSAYYLLTGGY--DNKLVL--TDLQ  120 (125)
Q Consensus        79 ~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~--d~~i~~--~~~~  120 (125)
                      +++.+..+...       ......+.++|||++++.+..  +..+.+  +|..
T Consensus       105 T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~  157 (368)
T 1mda_H          105 TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred             CCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchh
Confidence            99988887532       123567999999999988874  466888  8774

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.61  E-value=5.5e-09  Score=67.08  Aligned_cols=101  Identities=15%  Similarity=0.045  Sum_probs=56.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      +++++.|+.|+.||+.+++.+..+.. . ++                    .+..+..++..++.++.|+.|+.||..++
T Consensus        12 v~~gs~dg~v~a~d~~tG~~~W~~~~-~-~~--------------------~s~p~~~~g~~~v~~s~dg~l~a~d~~tG   69 (369)
T 2hz6_A           12 LFVSTLDGSLHAVSKRTGSIKWTLKE-D-PV--------------------LQVPTHVEEPAFLPDPNDGSLYTLGSKNN   69 (369)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEEC-C-CS--------------------CCCC-----CCEEECTTTCCEEEC-----
T ss_pred             EEEEcCCCEEEEEECCCCCEEEEecC-C-Cc--------------------eecceEcCCCEEEEeCCCCEEEEEECCCC
Confidence            46788999999999999999887764 2 11                    11223345667777889999999999888


Q ss_pred             ceeEEeCCCCC-ceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 RPLQTFKPHTA-DVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.+..+..+.. .+.+.....++..+++++.|+.++.||.+++.
T Consensus        70 ~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~  113 (369)
T 2hz6_A           70 EGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGE  113 (369)
T ss_dssp             CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC---
T ss_pred             ceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCc
Confidence            87766653321 11110000133456677778888888887654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.57  E-value=1.1e-06  Score=54.31  Aligned_cols=71  Identities=15%  Similarity=0.115  Sum_probs=59.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ...++..++++++++...++.|.+||.. ++.+..+... .....+...+++.++++++.++.|..+|..++.
T Consensus       127 ~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~  197 (276)
T 3no2_A          127 FRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR  197 (276)
T ss_dssp             CSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred             ccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence            4455778999999999999999999987 9988888743 456678888999999999988899999988653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.55  E-value=6.9e-07  Score=61.59  Aligned_cols=73  Identities=7%  Similarity=0.064  Sum_probs=55.8

Q ss_pred             CCeEEEEECCCCCEEE-----EEeCCCcEEEEEcCCCceeEEeCCCCCce--eEEEEccCCCeEEEeecCCe--------
Q psy14458         49 SPVSALCVDPSGRLMV-----SGHEDSSCVLYDIRGSRPLQTFKPHTADV--RSIRFSPSAYYLLTGGYDNK--------  113 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~-----~~~~~~~i~~~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~d~~--------  113 (125)
                      ..+..++|||++++++     .|+.+..|++||+.+++.+.  ..+-..+  ..+.|+|||+.|+.++.|..        
T Consensus       121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~  198 (695)
T 2bkl_A          121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER  198 (695)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred             EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence            4688999999999888     44455789999999987641  1121222  67999999999999988776        


Q ss_pred             -----EEEEeCCCCC
Q psy14458        114 -----LVLTDLQGTM  123 (125)
Q Consensus       114 -----i~~~~~~~~~  123 (125)
                           |++|++.++.
T Consensus       199 ~~~~~v~~~~l~t~~  213 (695)
T 2bkl_A          199 PGYTTIRYHTLGTEP  213 (695)
T ss_dssp             GGGCEEEEEETTSCG
T ss_pred             CCCCEEEEEECCCCc
Confidence                 9999998654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.54  E-value=4.8e-07  Score=62.47  Aligned_cols=74  Identities=11%  Similarity=0.213  Sum_probs=57.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCe----------
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDS-----SCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNK----------  113 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~-----~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~----------  113 (125)
                      ..+..++|||++++++.+..++     .|++||+.+++...... ....+..+.|+|||+.|+.++.++.          
T Consensus       125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~  203 (710)
T 2xdw_A          125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (710)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcccceEEEEeCCCEEEEEEECCccccccccccc
Confidence            3578999999999988765443     89999999987665322 1223667999999999999887765          


Q ss_pred             ------EEEEeCCCCC
Q psy14458        114 ------LVLTDLQGTM  123 (125)
Q Consensus       114 ------i~~~~~~~~~  123 (125)
                            |++|++.++.
T Consensus       204 ~~~~~~v~~~~l~t~~  219 (710)
T 2xdw_A          204 TNLHQKLYYHVLGTDQ  219 (710)
T ss_dssp             CCCCCEEEEEETTSCG
T ss_pred             cCCCCEEEEEECCCCc
Confidence                  9999997653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.53  E-value=7.1e-07  Score=61.97  Aligned_cols=70  Identities=7%  Similarity=0.057  Sum_probs=51.0

Q ss_pred             EEEEECCCCCEEEEEeCCCc--------------EEEEEcCCCce--eEEeC--CCCCceeEEEEccCCCeEEEeecCC-
Q psy14458         52 SALCVDPSGRLMVSGHEDSS--------------CVLYDIRGSRP--LQTFK--PHTADVRSIRFSPSAYYLLTGGYDN-  112 (125)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~--------------i~~~d~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~-  112 (125)
                      ..++|+|+ +.|+.+..++.              |++|++.+++.  ...+.  .+...+..+.|+|||++|+..+.++ 
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT  290 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence            46789999 88887776554              88999877652  22333  2334578899999999888877543 


Q ss_pred             ----eEEEEeCCCC
Q psy14458        113 ----KLVLTDLQGT  122 (125)
Q Consensus       113 ----~i~~~~~~~~  122 (125)
                          .|.+||+.++
T Consensus       291 ~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          291 DPVNTVHVARVTNG  304 (741)
T ss_dssp             CSCCEEEEEEEETT
T ss_pred             CCcceEEEEECCCC
Confidence                7999998764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.53  E-value=7.7e-06  Score=55.51  Aligned_cols=100  Identities=16%  Similarity=0.156  Sum_probs=66.3

Q ss_pred             eeecCCCeEEEEECC--CCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEEC----CCCCEEEEEeC-CCcEEE
Q psy14458          2 VSGHEDSSCVLYDIR--GSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVD----PSGRLMVSGHE-DSSCVL   74 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~-~~~i~~   74 (125)
                      ++++.|+.|.+||+.  +++.+..+...                     .....++++    |++++++.++. .+.+.+
T Consensus       212 yv~~~dg~V~viD~~~~t~~~v~~i~~G---------------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~V  270 (567)
T 1qks_A          212 FVIGRDGKVNMIDLWMKEPTTVAEIKIG---------------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVI  270 (567)
T ss_dssp             EEEETTSEEEEEETTSSSCCEEEEEECC---------------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEE
T ss_pred             EEEcCCCeEEEEECCCCCCcEeEEEecC---------------------CCCceeEEccccCCCCCEEEEEEccCCeEEE
Confidence            456788899999985  66666555532                     345677888    58877766654 477888


Q ss_pred             EEcCCCceeEEeCCC-------------------------------------------------------CCceeEEEEc
Q psy14458         75 YDIRGSRPLQTFKPH-------------------------------------------------------TADVRSIRFS   99 (125)
Q Consensus        75 ~d~~~~~~~~~~~~~-------------------------------------------------------~~~v~~~~~~   99 (125)
                      +|..+.+.+..+...                                                       ......+.|+
T Consensus       271 iD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~  350 (567)
T 1qks_A          271 MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLD  350 (567)
T ss_dssp             EETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC
T ss_pred             EECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceEC
Confidence            887776555443210                                                       1122356788


Q ss_pred             cCCCeEEEee-cCCeEEEEeCCCC
Q psy14458        100 PSAYYLLTGG-YDNKLVLTDLQGT  122 (125)
Q Consensus       100 ~~~~~~~~~~-~d~~i~~~~~~~~  122 (125)
                      |++++++++. .++.|.++|+.++
T Consensus       351 pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          351 GSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCC
Confidence            8888776655 5788999998765

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.50  E-value=4.1e-08  Score=63.02  Aligned_cols=97  Identities=14%  Similarity=0.120  Sum_probs=55.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      +++++.|+.++.||+.+++.+..+..+.                        ...++|++..++.++.++.|+.||..++
T Consensus        95 v~~g~~dg~v~a~D~~tG~~~w~~~~~~------------------------~~~~~p~~~~v~~~~~dg~v~a~d~~tG  150 (369)
T 2hz6_A           95 LYMGKKQDIWYVIDLLTGEKQQTLSSAF------------------------ADSLSPSTSLLYLGRTEYTITMYDTKTR  150 (369)
T ss_dssp             CCCCEEEEEEEEECCC----------------------------------------------EEEEEEEEEEECCCSSSS
T ss_pred             EEEEeCCCEEEEEECCCCcEEEEecCCC------------------------cccccccCCEEEEEecCCEEEEEECCCC
Confidence            3567788999999999998877665332                        1223457788888999999999999998


Q ss_pred             ceeEEeCCCCCceeEEEEccCC---CeEEEeecCCeEEEEeCCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSA---YYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.+..+....  .....+.++.   ..++.++.|+.+..||.+++.
T Consensus       151 ~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          151 ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             CEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence            8766554211  1222233322   467778899999999998764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.48  E-value=1.8e-05  Score=50.98  Aligned_cols=72  Identities=10%  Similarity=-0.106  Sum_probs=57.1

Q ss_pred             eEEEEECCCCCEEEEEeC----------CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCC-eEEEee-cCCeEEEEe
Q psy14458         51 VSALCVDPSGRLMVSGHE----------DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAY-YLLTGG-YDNKLVLTD  118 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~~----------~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-~d~~i~~~~  118 (125)
                      ...++++|+++.++.+..          .+.|.++|..+++.+..+. ......++.|+|||+ .++++. .++.|.++|
T Consensus       269 ~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD  347 (373)
T 2mad_H          269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            445788999887766543          3579999999999888886 344578999999998 777777 589999999


Q ss_pred             CCCCC
Q psy14458        119 LQGTM  123 (125)
Q Consensus       119 ~~~~~  123 (125)
                      +.++.
T Consensus       348 ~~t~~  352 (373)
T 2mad_H          348 AGAGD  352 (373)
T ss_pred             CCCCC
Confidence            98764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.42  E-value=6.3e-06  Score=56.96  Aligned_cols=121  Identities=8%  Similarity=0.068  Sum_probs=77.2

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCC-eEEEEecCccc------------cccc-CC-CCCeEEEEECCCCCEEEEE
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTAD-VRSIHLDHYTT------------EAGT-RQ-GSPVSALCVDPSGRLMVSG   66 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~------------~~~~-~~-~~~i~~~~~~~~~~~~~~~   66 (125)
                      +.++.++.++++|..+++.+..+.....+ ...+.-.+...            .... .. ...-..++++|+..+++..
T Consensus       331 ~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~  410 (677)
T 1kb0_A          331 LHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLP  410 (677)
T ss_dssp             EECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEE
T ss_pred             EEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEe
Confidence            56788999999999999988766532211 11110000000            0000 00 0111356788887777665


Q ss_pred             eC-------------------------------------------CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCC
Q psy14458         67 HE-------------------------------------------DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAY  103 (125)
Q Consensus        67 ~~-------------------------------------------~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  103 (125)
                      ..                                           .+.|..||+.+++.+..+. +...+....+...+.
T Consensus       411 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~  489 (677)
T 1kb0_A          411 AQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGN  489 (677)
T ss_dssp             EEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTT
T ss_pred             ChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCC
Confidence            33                                           2779999999999888776 344455555666777


Q ss_pred             eEEEeecCCeEEEEeCCCCC
Q psy14458        104 YLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus       104 ~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .++.++.|+.+++||.+++.
T Consensus       490 ~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          490 VVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             EEEEECTTSEEEEEETTTCC
T ss_pred             EEEEECCCCcEEEEECCCCc
Confidence            88889999999999998874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.40  E-value=4.1e-05  Score=46.92  Aligned_cols=71  Identities=13%  Similarity=0.072  Sum_probs=54.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      ..+..+++++++.++++...++.|..||................+..+.+.|++.++++...++.|..||.
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  127 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD  127 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC
Confidence            57889999999998888777888999997622222222234456889999999988888777888999987

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.38  E-value=4.8e-05  Score=46.62  Aligned_cols=70  Identities=9%  Similarity=0.030  Sum_probs=54.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeE-EeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQ-TFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      ..+..+++++++.++++...++.|..||. +++... ........+..+.+.+++.++++...++.|..+|.
T Consensus        99 ~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  169 (299)
T 2z2n_A           99 SAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE  169 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             CCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence            56889999999988888877889999998 544332 22334456889999999988888777888999987

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.35  E-value=2.3e-05  Score=51.09  Aligned_cols=68  Identities=4%  Similarity=0.059  Sum_probs=50.0

Q ss_pred             EEECCCCCEEEEEeCCC--cEEEEEcCCCceeEEe----CCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCC
Q psy14458         54 LCVDPSGRLMVSGHEDS--SCVLYDIRGSRPLQTF----KPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        54 ~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~----~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++|++++..++.++.++  .|.+++...+.....+    ......+.+++++| ++.+++ +..++.|..||..++
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~  250 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQ  250 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTC
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCC
Confidence            89999999888888766  7888987765443333    22446678899999 555555 666889999998754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.34  E-value=8.4e-06  Score=56.48  Aligned_cols=54  Identities=9%  Similarity=0.061  Sum_probs=42.3

Q ss_pred             CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         69 DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        69 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +|.|..||+.+++.+..+..+. .+....+...+.+++.++.|+.++.||.+++.
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence            3779999999999888776433 33334556677788999999999999999875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.20  E-value=2e-05  Score=54.55  Aligned_cols=70  Identities=14%  Similarity=0.170  Sum_probs=49.0

Q ss_pred             EEEEECCCCCEEEEEeCCCc-------------EEEEEcCCCce--eEEeC--C-CCCceeEEEEccCCCeEEEeec---
Q psy14458         52 SALCVDPSGRLMVSGHEDSS-------------CVLYDIRGSRP--LQTFK--P-HTADVRSIRFSPSAYYLLTGGY---  110 (125)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~-------------i~~~d~~~~~~--~~~~~--~-~~~~v~~~~~~~~~~~~~~~~~---  110 (125)
                      ..++|+ +++.|+.+..+..             |++|++.+.+.  ...+.  . +...+..+.|+|||++|+....   
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            466899 9988887776643             99999877542  33333  2 3445678999999998855432   


Q ss_pred             -CCeEEEEeCCCC
Q psy14458        111 -DNKLVLTDLQGT  122 (125)
Q Consensus       111 -d~~i~~~~~~~~  122 (125)
                       +..++++|+.++
T Consensus       257 ~~~~i~~~d~~~~  269 (693)
T 3iuj_A          257 SGNRLYVKDLSQE  269 (693)
T ss_dssp             SCCEEEEEETTST
T ss_pred             CCcEEEEEECCCC
Confidence             358999998765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.20  E-value=3.8e-05  Score=47.67  Aligned_cols=61  Identities=20%  Similarity=0.242  Sum_probs=50.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEc-cCCCeEEEee
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS-PSAYYLLTGG  109 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~  109 (125)
                      .....+++++++++.++....+.|..||..+++.+..+......+.+++|. |+++.|...+
T Consensus       199 ~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          199 QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            456789999999988888888889999998898888887666789999998 7876554443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.20  E-value=0.00019  Score=43.89  Aligned_cols=71  Identities=8%  Similarity=-0.011  Sum_probs=54.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee-EEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPL-QTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ..+..+++++++.++++...++.|..+|.. ++.. .........+..+.+.+++.++++...++.|..+|..
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~  133 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD  133 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC
Confidence            568899999999988877778889999977 5432 2222234668899999999988887778889888876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.19  E-value=0.00023  Score=43.55  Aligned_cols=71  Identities=7%  Similarity=-0.018  Sum_probs=54.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeE-EeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQ-TFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ..+..+++.+++.++++...++.|..+|.. ++... .+......+..+.+.++++++++...++.|..++..
T Consensus       104 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  175 (300)
T 2qc5_A          104 SGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT  175 (300)
T ss_dssp             CCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred             CCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC
Confidence            568899999999988887778889999987 54332 233344568899999999977777778889998873

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.16  E-value=4.3e-05  Score=47.98  Aligned_cols=65  Identities=14%  Similarity=0.066  Sum_probs=47.7

Q ss_pred             CCeEE-EEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeE-EEEeC
Q psy14458         49 SPVSA-LCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKL-VLTDL  119 (125)
Q Consensus        49 ~~i~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i-~~~~~  119 (125)
                      ..+.. +.|+ ++ ++++++.++.+++| +.+++... +..+...|.++.|+|  .++++++.++.. .+|.+
T Consensus       263 ~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          263 RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             SEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EECSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred             cccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence            55665 8899 88 88999999999999 87555433 334577889999999  677777666553 66654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.09  E-value=0.00031  Score=43.30  Aligned_cols=97  Identities=10%  Similarity=-0.004  Sum_probs=67.2

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      .+.+.++.|+++|+.+++.+..+ -...                   ..-..+++.. +.+....-.++.+.++|..+.+
T Consensus        69 ~stG~~g~v~~iD~~Tgkv~~~~-l~~~-------------------~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~  127 (268)
T 3nok_A           69 ESTGHQGTLRQLSLESAQPVWME-RLGN-------------------IFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQ  127 (268)
T ss_dssp             EEETTTTEEEECCSSCSSCSEEE-ECTT-------------------CCEEEEEECS-SCEEEEESSSCEEEEEETTTTE
T ss_pred             EEcCCCCEEEEEECCCCcEEeEE-CCCC-------------------cceeEEEEeC-CEEEEEEccCCEEEEEECCcCc
Confidence            46778888999999999887766 2221                   1223455543 2444445578899999999999


Q ss_pred             eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         82 PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .+..+... ..-..++  +|++.++.+..++.|.++|..+.
T Consensus       128 ~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~  165 (268)
T 3nok_A          128 RERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGF  165 (268)
T ss_dssp             EEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTC
T ss_pred             EEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCC
Confidence            99888742 2223444  47777777777999999998765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.06  E-value=0.0002  Score=46.70  Aligned_cols=73  Identities=4%  Similarity=0.078  Sum_probs=51.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEE----eCCCCCce--eEEEEcc-CCCeEEEeecCCeEEEEeCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQT----FKPHTADV--RSIRFSP-SAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~----~~~~~~~v--~~~~~~~-~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ....+++++|++..|+.+..++.|+.||..++.....    ........  ..++|+| ++.++++-..++.|+.|+...
T Consensus       219 ~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g  298 (409)
T 3hrp_A          219 GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG  298 (409)
T ss_dssp             SCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred             CCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence            5678899999554555577788999999887653322    22222222  3899999 577777777889999998764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.05  E-value=0.00015  Score=44.87  Aligned_cols=74  Identities=11%  Similarity=0.117  Sum_probs=54.1

Q ss_pred             CCeEEEEEC----CCCCEE-EEEeCCCcEEEEEcC-CCc-----eeEEeCCCC-CceeEEEEccCCCeEEEeecCCeEEE
Q psy14458         49 SPVSALCVD----PSGRLM-VSGHEDSSCVLYDIR-GSR-----PLQTFKPHT-ADVRSIRFSPSAYYLLTGGYDNKLVL  116 (125)
Q Consensus        49 ~~i~~~~~~----~~~~~~-~~~~~~~~i~~~d~~-~~~-----~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~d~~i~~  116 (125)
                      .....++++    |+++.+ ++...++.|.+||.. +++     ....+..+. .....++++++|.++++...++.|..
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~  251 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence            345788999    988655 444567899999976 343     233344343 56788999999998888888899999


Q ss_pred             EeCCCC
Q psy14458        117 TDLQGT  122 (125)
Q Consensus       117 ~~~~~~  122 (125)
                      ||.+++
T Consensus       252 ~d~~~g  257 (314)
T 1pjx_A          252 FGPDGG  257 (314)
T ss_dssp             ECTTCB
T ss_pred             EcCCCC
Confidence            998743

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.05  E-value=0.00021  Score=49.75  Aligned_cols=72  Identities=17%  Similarity=0.192  Sum_probs=50.1

Q ss_pred             CeEEEEECCCCCEEEEEeCC-----CcEEEEEcCCC--ceeEEeCCCCCceeEEEEccCCCeEEEeec----CCeEEEEe
Q psy14458         50 PVSALCVDPSGRLMVSGHED-----SSCVLYDIRGS--RPLQTFKPHTADVRSIRFSPSAYYLLTGGY----DNKLVLTD  118 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----d~~i~~~~  118 (125)
                      .+..+.|+|++++++..+.+     ..|++||+.++  +....+..+...+... +.|++..|+..+.    ++.|.+||
T Consensus       269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d  347 (741)
T 1yr2_A          269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVD  347 (741)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEE
T ss_pred             EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEe
Confidence            57889999999988777644     37999999876  3144454444444444 3488887777665    44599999


Q ss_pred             CCCC
Q psy14458        119 LQGT  122 (125)
Q Consensus       119 ~~~~  122 (125)
                      +.++
T Consensus       348 ~~~~  351 (741)
T 1yr2_A          348 LSGS  351 (741)
T ss_dssp             CSSS
T ss_pred             CCCC
Confidence            8763

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.04  E-value=0.00032  Score=44.18  Aligned_cols=60  Identities=15%  Similarity=0.233  Sum_probs=46.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEc-cCCCeEEEee
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS-PSAYYLLTGG  109 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~  109 (125)
                      .....+++++++.++++...++.|..||. +++.+..+......+.+++|. |++..++.++
T Consensus       230 ~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          230 GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            34678999999988887777788999998 566666666566679999998 8877665444

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.01  E-value=0.00014  Score=47.18  Aligned_cols=99  Identities=10%  Similarity=0.073  Sum_probs=64.7

Q ss_pred             CCCeEEEEECCCCcceeeecCCC-CCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCce
Q psy14458          6 EDSSCVLYDIRGSRPLQTFKPHT-ADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHE--DSSCVLYDIRGSRP   82 (125)
Q Consensus         6 ~d~~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~   82 (125)
                      .++.|.+||..+++.+..+.... ..+              ..+.....++++|++++++.++.  ++.|.++|+.+++.
T Consensus       107 ~~~~VsviD~~t~~v~~~I~v~~g~r~--------------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v  172 (386)
T 3sjl_D          107 RTDYVEVFDPVTLLPTADIELPDAPRF--------------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF  172 (386)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCC--------------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             CCCEEEEEECCCCeEEEEEECCCcccc--------------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence            46789999999988877664211 000              00124567899999999888764  68899999999998


Q ss_pred             eEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         83 LQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        83 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      +..+..-.  + ...+....+.+++.+.||.+.+.++.+
T Consensus       173 v~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          173 KRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGT  208 (386)
T ss_dssp             EEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred             EEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCC
Confidence            88875321  1 122222344555666677777776654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.98  E-value=0.00044  Score=44.12  Aligned_cols=107  Identities=9%  Similarity=0.030  Sum_probs=65.1

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCe-EEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPV-SALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      +.++.++.|..+|..+++.+..+.......    .       .......+ .....  .+..++.++.++.|..+|..++
T Consensus        57 ~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~----~-------~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG  123 (376)
T 3q7m_A           57 YAADRAGLVKALNADDGKEIWSVSLAEKDG----W-------FSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDG  123 (376)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEECCC-------C-------CSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTC
T ss_pred             EEEcCCCeEEEEEccCCceeeeecCccccc----c-------ccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCC
Confidence            456667888888888888776554321000    0       00000122 22222  3567778889999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.+...............  .+..++.++.++.+..+|.+++.
T Consensus       124 ~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~  164 (376)
T 3q7m_A          124 TVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGA  164 (376)
T ss_dssp             CEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCc
Confidence            888776643322222222  23467778889999999987764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.95  E-value=0.00042  Score=42.96  Aligned_cols=74  Identities=5%  Similarity=-0.014  Sum_probs=54.4

Q ss_pred             CCeEEEEECCCCCEE-EEEeCCCcEEEEEc--CCCce-----eEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         49 SPVSALCVDPSGRLM-VSGHEDSSCVLYDI--RGSRP-----LQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~-~~~~~~~~i~~~d~--~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      .....++|+|+++.+ ++.+.++.|.+|++  .++..     +..+..+......++++++|++.++...++.|..||..
T Consensus       149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV  228 (297)
T ss_dssp             SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred             ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence            346789999999866 55556788999987  34432     22333334567789999999888888888899999987


Q ss_pred             CC
Q psy14458        121 GT  122 (125)
Q Consensus       121 ~~  122 (125)
                      ++
T Consensus       229 tG  230 (297)
T 3g4e_A          229 TG  230 (297)
T ss_dssp             TC
T ss_pred             Cc
Confidence            54

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.95  E-value=0.00019  Score=47.44  Aligned_cols=107  Identities=17%  Similarity=0.310  Sum_probs=69.4

Q ss_pred             eeecCCCeEEEEECCCC----cceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCC------Cc
Q psy14458          2 VSGHEDSSCVLYDIRGS----RPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHED------SS   71 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~   71 (125)
                      +++..+++|.++|+.+.    +....+....  +          .. ......-..+...|++ .+++...+      +.
T Consensus       100 v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~--~----------~~-~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A          100 VPGLRSSRIYIIDTKPNPREPKIIKVIEPEE--V----------KK-VSGYSRLHTVHCGPDA-IYISALGNEEGEGPGG  165 (462)
T ss_dssp             EEBTTTCCEEEEECCSCTTSCEEEEEECHHH--H----------HH-HHCEEEEEEEEECSSC-EEEEEEEETTSCSCCE
T ss_pred             EccCCCCeEEEEECCCCCCCceeeeeechhh--c----------cc-ccCCCcccceeECCCe-EEEEcCCCcCCCCCCe
Confidence            56777888999998654    2333331000  0          00 0000234567788999 66655444      78


Q ss_pred             EEEEEcCCCceeEEeCCCCCc---eeEEEEccCCCeEEEee-------------------cCCeEEEEeCCCC
Q psy14458         72 CVLYDIRGSRPLQTFKPHTAD---VRSIRFSPSAYYLLTGG-------------------YDNKLVLTDLQGT  122 (125)
Q Consensus        72 i~~~d~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~-------------------~d~~i~~~~~~~~  122 (125)
                      +.++|..+.+.+..+......   -..+.|+|+++.+++..                   .+.+|.+||+.++
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence            999999999988888732221   23488899999888874                   4788999999864

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.94  E-value=0.00062  Score=42.00  Aligned_cols=94  Identities=14%  Similarity=0.056  Sum_probs=63.3

Q ss_pred             CCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q psy14458          7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTF   86 (125)
Q Consensus         7 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~   86 (125)
                      +++|+++|+.+++.+..+.....                   .....+++.. +...++.-.++.+.++|..+.+.+..+
T Consensus        43 ~s~v~~iD~~tg~v~~~i~l~~~-------------------~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i  102 (266)
T 2iwa_A           43 RSSVRQVALQTGKVENIHKMDDS-------------------YFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNF  102 (266)
T ss_dssp             TCEEEEEETTTCCEEEEEECCTT-------------------CCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEecCCC-------------------cceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEE
Confidence            57899999998888776652221                   2233455542 244455557789999999999988888


Q ss_pred             CCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         87 KPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        87 ~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ..-...  ...+++|++.++.+..++.+.++|..+.
T Consensus       103 ~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~  136 (266)
T 2iwa_A          103 THQMKD--GWGLATDGKILYGSDGTSILYEIDPHTF  136 (266)
T ss_dssp             ECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTC
T ss_pred             ECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCC
Confidence            632122  2335568777766667899999998774

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.93  E-value=0.00018  Score=44.35  Aligned_cols=96  Identities=7%  Similarity=0.068  Sum_probs=66.6

Q ss_pred             cCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeE
Q psy14458          5 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQ   84 (125)
Q Consensus         5 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~   84 (125)
                      -.++.+.++|..+.+.+..+.....                   ..   ..+++++..++.+..++.|.++|..+.+...
T Consensus        83 ~~~~~v~viD~~t~~v~~~i~~g~~-------------------~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~  140 (266)
T 2iwa_A           83 WLKNIGFIYDRRTLSNIKNFTHQMK-------------------DG---WGLATDGKILYGSDGTSILYEIDPHTFKLIK  140 (266)
T ss_dssp             TTCSEEEEEETTTTEEEEEEECCSS-------------------SC---CEEEECSSSEEEECSSSEEEEECTTTCCEEE
T ss_pred             ecCCEEEEEECCCCcEEEEEECCCC-------------------Ce---EEEEECCCEEEEECCCCeEEEEECCCCcEEE
Confidence            3567888888888777766642210                   11   2344567667677778899999999988777


Q ss_pred             EeCCCC--C---ceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         85 TFKPHT--A---DVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        85 ~~~~~~--~---~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+.-..  .   ..+.+.|. ++..++....++.|.+.|..++.
T Consensus       141 ~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~  183 (266)
T 2iwa_A          141 KHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGT  183 (266)
T ss_dssp             EEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCC
T ss_pred             EEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCc
Confidence            766221  2   35677777 77777777678999999998764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.92  E-value=0.00015  Score=45.90  Aligned_cols=115  Identities=7%  Similarity=0.011  Sum_probs=67.1

Q ss_pred             CCCeEEEEECCCCcceeeecCCCCCe---EEEEecCcccccccC------CCCCeEEEEECCCCCEEEEEeCCC-cEEEE
Q psy14458          6 EDSSCVLYDIRGSRPLQTFKPHTADV---RSIHLDHYTTEAGTR------QGSPVSALCVDPSGRLMVSGHEDS-SCVLY   75 (125)
Q Consensus         6 ~d~~i~v~d~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~   75 (125)
                      .++.|.+||+.+++....+.++....   ..+..++........      ....+..++++|+++.++.+...+ .++.+
T Consensus       143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~  222 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI  222 (343)
T ss_dssp             GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence            56788999988777655554321100   111112111110000      113468899999998888877665 45555


Q ss_pred             EcC---CCc-----eeE--EeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         76 DIR---GSR-----PLQ--TFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        76 d~~---~~~-----~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      +..   .+.     ...  ...++......++++++|.++++...++.|..||..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~  277 (343)
T 2qe8_A          223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSA  277 (343)
T ss_dssp             EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETT
T ss_pred             EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECC
Confidence            532   110     000  111223345679999999999999999999999983

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.92  E-value=0.0005  Score=42.75  Aligned_cols=58  Identities=12%  Similarity=0.068  Sum_probs=41.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC---C-CCCceeEEEEccCCCeEEE
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK---P-HTADVRSIRFSPSAYYLLT  107 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~~  107 (125)
                      ..+..++++++++++++...++.|..|+.. ++......   . ....++.+.++|+|+++++
T Consensus        86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~t  147 (305)
T 3dr2_A           86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFT  147 (305)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEE
T ss_pred             CccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEe
Confidence            567899999999977776666889999875 44322111   1 1134678999999998886

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.90  E-value=0.00061  Score=43.45  Aligned_cols=96  Identities=14%  Similarity=0.102  Sum_probs=63.6

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      +.++.++.+..+|..+++.+.....                      .....+..  .+..+..++.++.+..+|..+++
T Consensus       243 ~~~~~~g~l~~~d~~tG~~~w~~~~----------------------~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~  298 (376)
T 3q7m_A          243 FALAYNGNLTALDLRSGQIMWKREL----------------------GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGV  298 (376)
T ss_dssp             EEECTTSCEEEEETTTCCEEEEECC----------------------CCEEEEEE--ETTEEEEEETTCCEEEEETTTCC
T ss_pred             EEEecCcEEEEEECCCCcEEeeccC----------------------CCCCCceE--ECCEEEEEcCCCeEEEEECCCCc
Confidence            3455677788888777776655431                      11223333  35677888889999999999998


Q ss_pred             eeEEeCCC-CCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         82 PLQTFKPH-TADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        82 ~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ........ .........  .+..++.++.++.+.++|.+++.
T Consensus       299 ~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          299 TLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             EEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred             EEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence            87766522 222223333  34578888889999999988764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.88  E-value=0.0002  Score=44.17  Aligned_cols=95  Identities=6%  Similarity=-0.021  Sum_probs=68.1

Q ss_pred             cCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeE
Q psy14458          5 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQ   84 (125)
Q Consensus         5 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~   84 (125)
                      -.++.+.+||..+.+.+..+....                    .. ..++  +++..++.+..++.|.++|..+.+.+.
T Consensus       113 w~~~~v~V~D~~Tl~~~~ti~~~~--------------------eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~  169 (268)
T 3nok_A          113 WTEGLLFTWSGMPPQRERTTRYSG--------------------EG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVG  169 (268)
T ss_dssp             SSSCEEEEEETTTTEEEEEEECSS--------------------CC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEE
T ss_pred             ccCCEEEEEECCcCcEEEEEeCCC--------------------ce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEE
Confidence            457888899998888887776322                    11 2333  457777777778999999999988877


Q ss_pred             EeCC--CCC---ceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         85 TFKP--HTA---DVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        85 ~~~~--~~~---~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+..  +..   .++.+.|. +|++++....+..|.+.|.+++.
T Consensus       170 ~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~  212 (268)
T 3nok_A          170 AVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGT  212 (268)
T ss_dssp             EEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB
T ss_pred             EEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc
Confidence            7663  222   34556766 78777777778899999998764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.88  E-value=0.00016  Score=44.50  Aligned_cols=95  Identities=12%  Similarity=0.193  Sum_probs=65.9

Q ss_pred             cCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeE
Q psy14458          5 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQ   84 (125)
Q Consensus         5 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~   84 (125)
                      -.++.+.+||..+.+.+..+....                       ....+.+++..++.++.++.|.++|..+.+.+.
T Consensus       104 w~~~~v~v~D~~t~~~~~ti~~~~-----------------------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~  160 (262)
T 3nol_A          104 WKNGLGFVWNIRNLRQVRSFNYDG-----------------------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVR  160 (262)
T ss_dssp             SSSSEEEEEETTTCCEEEEEECSS-----------------------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEE
T ss_pred             eeCCEEEEEECccCcEEEEEECCC-----------------------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEE
Confidence            357788888888888877776322                       111223456667766667889999999988777


Q ss_pred             EeCCC--CCc---eeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         85 TFKPH--TAD---VRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        85 ~~~~~--~~~---v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+...  ..+   ++.+.|. +|++++....+..|.+.|.+++.
T Consensus       161 ~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~  203 (262)
T 3nol_A          161 TITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGK  203 (262)
T ss_dssp             EEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCB
T ss_pred             EEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCc
Confidence            76532  222   3456775 78877777788899999988764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.85  E-value=0.00031  Score=42.77  Aligned_cols=95  Identities=11%  Similarity=0.100  Sum_probs=66.3

Q ss_pred             cCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeE
Q psy14458          5 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQ   84 (125)
Q Consensus         5 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~   84 (125)
                      -.++.+.+||..+.+.+..+....                    .. ..++  +++..++.+..++.|.++|..+.+.+.
T Consensus        82 w~~~~v~v~D~~tl~~~~ti~~~~--------------------~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~  138 (243)
T 3mbr_X           82 WRNHEGFVYDLATLTPRARFRYPG--------------------EG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVG  138 (243)
T ss_dssp             SSSSEEEEEETTTTEEEEEEECSS--------------------CC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEE
T ss_pred             eeCCEEEEEECCcCcEEEEEeCCC--------------------Cc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEE
Confidence            457788888988888887776322                    11 2333  456666666778899999999988777


Q ss_pred             EeCC--CCC---ceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         85 TFKP--HTA---DVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        85 ~~~~--~~~---~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+.-  +..   .++.+.+. +|+.++....+..|.+.|.+++.
T Consensus       139 ~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~  181 (243)
T 3mbr_X          139 SIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGK  181 (243)
T ss_dssp             EEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB
T ss_pred             EEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCC
Confidence            7663  222   34455654 77777777778899999988764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.80  E-value=0.002  Score=40.81  Aligned_cols=98  Identities=13%  Similarity=0.123  Sum_probs=59.2

Q ss_pred             CCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEE-EEEe---CCCcEEEEEcCCCce
Q psy14458          7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLM-VSGH---EDSSCVLYDIRGSRP   82 (125)
Q Consensus         7 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~---~~~~i~~~d~~~~~~   82 (125)
                      +.+|.+||+.+++.+..+.....              .......+..+++++++..+ ++-.   .++.|.+||..+++.
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~--------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~  157 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPP--------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA  157 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTT--------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCeEEEEEECChh--------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence            45677777766665444332110              00112456889999865444 5444   578899999987765


Q ss_pred             eEEeCCCC-----------------------------CceeEEEEccCCCeEEEeecCC-eEEEEe
Q psy14458         83 LQTFKPHT-----------------------------ADVRSIRFSPSAYYLLTGGYDN-KLVLTD  118 (125)
Q Consensus        83 ~~~~~~~~-----------------------------~~v~~~~~~~~~~~~~~~~~d~-~i~~~~  118 (125)
                      ...+..|.                             ..+..++++|+++.++.+..++ .+..++
T Consensus       158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            55443210                             1357799999998887776554 455544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.80  E-value=0.00046  Score=42.95  Aligned_cols=65  Identities=12%  Similarity=0.089  Sum_probs=38.6

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         50 PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      .+.++...+++.+++..   +.+..+| .+++....+......+.++...+++. +..++.++.+..+|.
T Consensus       178 ~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~  242 (330)
T 3hxj_A          178 ITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP  242 (330)
T ss_dssp             CCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT
T ss_pred             ceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC
Confidence            34555565566544433   6777787 66666665554455566777766664 444455566666654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.80  E-value=0.0017  Score=39.95  Aligned_cols=96  Identities=16%  Similarity=0.144  Sum_probs=63.8

Q ss_pred             eecCCC--eEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEE-EeCCCcEEEEEcCC
Q psy14458          3 SGHEDS--SCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVS-GHEDSSCVLYDIRG   79 (125)
Q Consensus         3 t~~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~d~~~   79 (125)
                      +.+.++  +|+++|+.+++.+..+.....                   ..-..++..  +..+.. .-.++.+.++|..+
T Consensus        58 stG~~g~S~v~~vD~~Tgkv~~~~~l~~~-------------------~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t  116 (262)
T 3nol_A           58 STGLNGRSSIRKVDIESGKTLQQIELGKR-------------------YFGEGISDW--KDKIVGLTWKNGLGFVWNIRN  116 (262)
T ss_dssp             EEEETTEEEEEEECTTTCCEEEEEECCTT-------------------CCEEEEEEE--TTEEEEEESSSSEEEEEETTT
T ss_pred             ECCCCCCceEEEEECCCCcEEEEEecCCc-------------------cceeEEEEe--CCEEEEEEeeCCEEEEEECcc
Confidence            445554  899999999988777653321                   112234443  434444 44688899999999


Q ss_pred             CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         80 SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .+.+..+.... .=..++  +++..++....++.|.++|..+.
T Consensus       117 ~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~  156 (262)
T 3nol_A          117 LRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESL  156 (262)
T ss_dssp             CCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTC
T ss_pred             CcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCC
Confidence            99998887422 223344  57777777777888999998764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.80  E-value=0.00027  Score=48.11  Aligned_cols=54  Identities=9%  Similarity=-0.064  Sum_probs=38.3

Q ss_pred             CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         69 DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        69 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ++.|..+|..+++.+..+.. ...+....+...+..++.++.|+.++.+|.+++.
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCeEEEEECCCCCEEEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence            57899999999988777652 2223332233345567778999999999998764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.79  E-value=0.00042  Score=43.11  Aligned_cols=64  Identities=13%  Similarity=0.121  Sum_probs=45.0

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         50 PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      .+.++...+++. +..++.++.|..+|.. ++....+......+.++...+++.+++..   +.+..+|
T Consensus       138 ~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d  201 (330)
T 3hxj_A          138 IYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN  201 (330)
T ss_dssp             CCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC
T ss_pred             eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC
Confidence            345556666666 5556778999999988 77766666555567777777777765554   6788887

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.77  E-value=6.5e-05  Score=51.99  Aligned_cols=74  Identities=18%  Similarity=0.300  Sum_probs=53.2

Q ss_pred             CCCeEEEEECCCCCEEEE-----EeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCe---------
Q psy14458         48 GSPVSALCVDPSGRLMVS-----GHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNK---------  113 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~-----~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~---------  113 (125)
                      ...+..++|||++++++-     |++...|+++|+.+++.+.... .......+.|+ |++.|+.++.+..         
T Consensus       128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred             cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence            356889999999998874     3333569999999988654311 11113568899 9999988887743         


Q ss_pred             ----EEEEeCCCCC
Q psy14458        114 ----LVLTDLQGTM  123 (125)
Q Consensus       114 ----i~~~~~~~~~  123 (125)
                          |++|++.+..
T Consensus       206 ~~~~v~~~~lgt~~  219 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQ  219 (693)
T ss_dssp             CCCEEEEEETTSCG
T ss_pred             CCcEEEEEECCCCc
Confidence                9999987653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.76  E-value=0.00011  Score=48.23  Aligned_cols=69  Identities=12%  Similarity=0.050  Sum_probs=55.0

Q ss_pred             EEECCCCCEEEEEeC----------CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCC-eEEEee-cCCeEEEEeCCC
Q psy14458         54 LCVDPSGRLMVSGHE----------DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAY-YLLTGG-YDNKLVLTDLQG  121 (125)
Q Consensus        54 ~~~~~~~~~~~~~~~----------~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-~d~~i~~~~~~~  121 (125)
                      ++++|++..++....          .+.|.+.|..+.+.+..+.. ......+.|+||++ .+++.. .++.|.++|+.+
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t  402 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT  402 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence            678888877666542          35799999999998888862 33578899999998 888877 599999999987


Q ss_pred             CC
Q psy14458        122 TM  123 (125)
Q Consensus       122 ~~  123 (125)
                      ..
T Consensus       403 ~k  404 (426)
T 3c75_H          403 GE  404 (426)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.74  E-value=0.00022  Score=45.96  Aligned_cols=69  Identities=6%  Similarity=-0.120  Sum_probs=52.8

Q ss_pred             EEECCCCCEEEEEeC---------CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCC-eEEEee-cCCeEEEEeCCCC
Q psy14458         54 LCVDPSGRLMVSGHE---------DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAY-YLLTGG-YDNKLVLTDLQGT  122 (125)
Q Consensus        54 ~~~~~~~~~~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-~d~~i~~~~~~~~  122 (125)
                      ++++|++..++.+..         .+.+.++|+.+++.+..+... .....+.|+||++ .+++.. .++.|.++|+.+.
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence            679999887776533         235669999999888777633 3578999999997 556666 5999999999875


Q ss_pred             C
Q psy14458        123 M  123 (125)
Q Consensus       123 ~  123 (125)
                      .
T Consensus       348 k  348 (368)
T 1mda_H          348 Q  348 (368)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.72  E-value=0.00066  Score=42.19  Aligned_cols=70  Identities=9%  Similarity=-0.054  Sum_probs=53.7

Q ss_pred             CCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         49 SPVSALCVDPSGR-LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        49 ~~i~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ......+|+|+++ ++++...++.|..|+. +++ ...+......+..+.++++|+++++...++.|..|+..
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            5677899999998 6677778899999987 444 33444455678899999999977776667889888875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.72  E-value=0.00034  Score=48.41  Aligned_cols=54  Identities=6%  Similarity=0.004  Sum_probs=40.7

Q ss_pred             CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         69 DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        69 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +|.|..||..+++.+...... .......+...+.+++.++.|+.++.||.+++.
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence            478999999999988776632 233333444567788889999999999998764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.71  E-value=0.00015  Score=50.41  Aligned_cols=80  Identities=13%  Similarity=0.145  Sum_probs=57.5

Q ss_pred             CCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q psy14458          7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTF   86 (125)
Q Consensus         7 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~   86 (125)
                      ++.|..||+.+++.+..+..+.                     ....-.+...+.+++.++.|+.++.||.++++.+..+
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~---------------------~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~  512 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVT---------------------IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQ  512 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS---------------------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCC---------------------CccCccceECCCEEEEECCCCcEEEEECCCCccceee
Confidence            5889999999999887776432                     1112234446788999999999999999999999888


Q ss_pred             CCCCCc-eeEEEEccCCCeEEE
Q psy14458         87 KPHTAD-VRSIRFSPSAYYLLT  107 (125)
Q Consensus        87 ~~~~~~-v~~~~~~~~~~~~~~  107 (125)
                      +..... ..-+.|..+|+.+++
T Consensus       513 ~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          513 PAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             ECSSCCCSCCEEEEETTEEEEE
T ss_pred             eCCCCcccCceEEEECCEEEEE
Confidence            743322 234667778864433

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.67  E-value=0.001  Score=45.43  Aligned_cols=54  Identities=15%  Similarity=0.071  Sum_probs=38.1

Q ss_pred             CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         69 DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        69 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +|.|..||+.+++.+...... ..+..-.....+..++.++.|+.++.+|.+++.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~  518 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence            578999999999887766522 222221122245677779999999999998874

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.62  E-value=0.0019  Score=42.79  Aligned_cols=94  Identities=12%  Similarity=0.143  Sum_probs=64.8

Q ss_pred             CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEe-------------------C
Q psy14458          8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH-------------------E   68 (125)
Q Consensus         8 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------------------~   68 (125)
                      +.|.++|..+.+.+........+                 ...-..+-|+|+++.+++..                   .
T Consensus       164 g~v~vlD~~T~~v~~~~~~~~~~-----------------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~  226 (462)
T 2ece_A          164 GGILMLDHYSFEPLGKWEIDRGD-----------------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY  226 (462)
T ss_dssp             CEEEEECTTTCCEEEECCSBCTT-----------------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS
T ss_pred             CeEEEEECCCCeEEEEEccCCCC-----------------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc
Confidence            67888888887777666522211                 02234577899999888874                   3


Q ss_pred             CCcEEEEEcCCCceeEEeCCC-C-CceeEEEE--ccCCCeEEEeec------CCeEEEEe
Q psy14458         69 DSSCVLYDIRGSRPLQTFKPH-T-ADVRSIRF--SPSAYYLLTGGY------DNKLVLTD  118 (125)
Q Consensus        69 ~~~i~~~d~~~~~~~~~~~~~-~-~~v~~~~~--~~~~~~~~~~~~------d~~i~~~~  118 (125)
                      ...|.+||+.+++.+..+..- . .....+.|  +|++++...+++      +++|.+|.
T Consensus       227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~  286 (462)
T 2ece_A          227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWF  286 (462)
T ss_dssp             CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEE
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEE
Confidence            688999999998877777642 1 34556766  999998887774      55776554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.62  E-value=0.004  Score=39.15  Aligned_cols=72  Identities=7%  Similarity=-0.024  Sum_probs=51.9

Q ss_pred             CCeEEEEECCCCCEEEE-EeCCCcEEEEEcC--CC-c-----eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         49 SPVSALCVDPSGRLMVS-GHEDSSCVLYDIR--GS-R-----PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~-~~~~~~i~~~d~~--~~-~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      .....++|+|+++.++. ...++.|.+|+..  ++ +     .+..+.........+.++++|.++++...++.|..||.
T Consensus       179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            34678999999986644 4557889999985  45 3     12233333455678999999988887777788999987


Q ss_pred             C
Q psy14458        120 Q  120 (125)
Q Consensus       120 ~  120 (125)
                      .
T Consensus       259 ~  259 (326)
T 2ghs_A          259 D  259 (326)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.62  E-value=0.0034  Score=38.25  Aligned_cols=97  Identities=16%  Similarity=0.096  Sum_probs=64.1

Q ss_pred             eecCC--CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          3 SGHED--SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         3 t~~~d--~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      +.+.+  .+|+.+|+.+++.+..+.....                   ..-..+++.. +......-.++.+.++|..+.
T Consensus        36 stG~~g~S~v~~vD~~tgkv~~~~~l~~~-------------------~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl   95 (243)
T 3mbr_X           36 STGETGRSSVRKVDLETGRILQRAEVPPP-------------------YFGAGIVAWR-DRLIQLTWRNHEGFVYDLATL   95 (243)
T ss_dssp             EECCTTSCEEEEEETTTCCEEEEEECCTT-------------------CCEEEEEEET-TEEEEEESSSSEEEEEETTTT
T ss_pred             ECCCCCCceEEEEECCCCCEEEEEeCCCC-------------------cceeEEEEeC-CEEEEEEeeCCEEEEEECCcC
Confidence            34443  5899999999988877653321                   1112334432 334444457889999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +.+..+.... .=..++  +++..++.+..++.|.++|..+.
T Consensus        96 ~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~  134 (243)
T 3mbr_X           96 TPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTL  134 (243)
T ss_dssp             EEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTC
T ss_pred             cEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCC
Confidence            9998887432 223444  46766666667889999998764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.55  E-value=0.001  Score=45.44  Aligned_cols=72  Identities=7%  Similarity=0.023  Sum_probs=53.7

Q ss_pred             CCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCc------------eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEE
Q psy14458         49 SPVSALCVDPSGRLMVSGH-EDSSCVLYDIRGSR------------PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLV  115 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~  115 (125)
                      ....++.++|+|++++.++ .+..|.++|+.+.+            ...... -.....+++|+|+|...++.-.|+++.
T Consensus       277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~  355 (595)
T 1fwx_A          277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVV  355 (595)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEE
T ss_pred             CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEE
Confidence            4567899999998776654 67889999998653            223333 334578899999995556666799999


Q ss_pred             EEeCCC
Q psy14458        116 LTDLQG  121 (125)
Q Consensus       116 ~~~~~~  121 (125)
                      .||+.+
T Consensus       356 kwdi~~  361 (595)
T 1fwx_A          356 KWNIED  361 (595)
T ss_dssp             EEEHHH
T ss_pred             EEEhhH
Confidence            999865

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.52  E-value=0.0011  Score=45.99  Aligned_cols=79  Identities=11%  Similarity=0.148  Sum_probs=56.1

Q ss_pred             CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC
Q psy14458          8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK   87 (125)
Q Consensus         8 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~   87 (125)
                      +.|..||+.+++.+..+....                     ......+...+..++.++.+|.+++||..+++.+..+.
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~---------------------~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVS---------------------PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESS---------------------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEEEeCCCCcEEeecCCCC---------------------CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence            789999999998877765321                     22223344567788889999999999999999999887


Q ss_pred             CCC-CceeEEEEccCCCeEEE
Q psy14458         88 PHT-ADVRSIRFSPSAYYLLT  107 (125)
Q Consensus        88 ~~~-~~v~~~~~~~~~~~~~~  107 (125)
                      ... ..-.-+.|.++|+.++.
T Consensus       516 ~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          516 TGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             CSSCCCSCCEEEEETTEEEEE
T ss_pred             CCCCcccCCEEEEeCCEEEEE
Confidence            433 22234667778865443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.35  E-value=0.0022  Score=45.00  Aligned_cols=71  Identities=10%  Similarity=0.047  Sum_probs=47.4

Q ss_pred             EEEEECCCCCEEEEEeCC-----CcEEEEEcCCCce--eEEeC-CCCCceeEEEEccCCCeEEEeec---CCeEEEEeCC
Q psy14458         52 SALCVDPSGRLMVSGHED-----SSCVLYDIRGSRP--LQTFK-PHTADVRSIRFSPSAYYLLTGGY---DNKLVLTDLQ  120 (125)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~~~~~~---d~~i~~~~~~  120 (125)
                      ..++|+|+++.|+....+     ..|+.+++.+++.  ...+. ........+.|+|||++|+..+.   ...|.++|+.
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~  303 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR  303 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            467899999877666554     2578888876542  23332 23344567899999998876552   4458888887


Q ss_pred             CC
Q psy14458        121 GT  122 (125)
Q Consensus       121 ~~  122 (125)
                      ++
T Consensus       304 ~~  305 (751)
T 2xe4_A          304 KG  305 (751)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.33  E-value=0.0032  Score=43.22  Aligned_cols=55  Identities=11%  Similarity=-0.051  Sum_probs=37.9

Q ss_pred             CCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         68 EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        68 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..|.+..||+.+++.+.... +..++..-...-.+..++.++.|+.++.+|.+++.
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~  505 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CcCeEEEEECCCCCEEeEec-CCCCccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence            34789999999998877665 12222221122255677778999999999998875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.14  E-value=0.011  Score=41.03  Aligned_cols=117  Identities=9%  Similarity=0.047  Sum_probs=71.7

Q ss_pred             CCeEEEEECCCCcceeeecCCC-CCeEE-----E-----EecCcccccccCCCCCeEEEEECCCCCEEEEEeCCC-----
Q psy14458          7 DSSCVLYDIRGSRPLQTFKPHT-ADVRS-----I-----HLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDS-----   70 (125)
Q Consensus         7 d~~i~v~d~~~~~~~~~~~~~~-~~i~~-----~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----   70 (125)
                      ++.|..+|+.+++.+..+.... .+...     +     .|.+.........+.....++++|+...++.+..++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            6899999999999888765311 00000     0     000000000001112234578888888888887665     


Q ss_pred             --------------cEEEEEcCCCceeEEeCC--CC-------CceeEEEEccCCC---eEEEeecCCeEEEEeCCCCC
Q psy14458         71 --------------SCVLYDIRGSRPLQTFKP--HT-------ADVRSIRFSPSAY---YLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        71 --------------~i~~~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~~~~~~~d~~i~~~~~~~~~  123 (125)
                                    .|..+|..+++.+..+..  |.       .+.....+..+|+   .++.++.+|.++++|..++.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence                          399999999998887763  32       2222223334665   68889999999999988764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.00  E-value=0.034  Score=36.84  Aligned_cols=71  Identities=11%  Similarity=0.215  Sum_probs=54.1

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc------------eeEEeCC------CCCceeEEEEcc---CCCeEEEe
Q psy14458         50 PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR------------PLQTFKP------HTADVRSIRFSP---SAYYLLTG  108 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~------------~~~~~~~------~~~~v~~~~~~~---~~~~~~~~  108 (125)
                      .+..+.++|+|.+++..+ +..|.|..+..+.            ..+.+..      ...+|..+.|+|   ++..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            577899999999999885 5578888876321            1122221      246799999999   46789999


Q ss_pred             ecCCeEEEEeCCC
Q psy14458        109 GYDNKLVLTDLQG  121 (125)
Q Consensus       109 ~~d~~i~~~~~~~  121 (125)
                      ..|++|++||+..
T Consensus       146 tsD~~Ir~yDl~~  158 (452)
T 3pbp_A          146 KEDDTITMFDILN  158 (452)
T ss_dssp             ETTSCEEEEETTC
T ss_pred             ecCCEEEEEEccc
Confidence            9999999999985

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.97  E-value=0.023  Score=34.44  Aligned_cols=73  Identities=15%  Similarity=0.216  Sum_probs=46.0

Q ss_pred             CCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCC-CeEEEeec--CCeEEEEeCCC
Q psy14458         49 SPVSALCVDPSGRLM-VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSA-YYLLTGGY--DNKLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~--d~~i~~~~~~~  121 (125)
                      .....+++++++..+ ++-...+.|.+++...................++++|++ .++++...  .+.|..+++..
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg  155 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence            467899999976544 444556789999876433222222222456789999954 44454433  46788887754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.84  E-value=0.015  Score=39.93  Aligned_cols=112  Identities=8%  Similarity=0.022  Sum_probs=61.0

Q ss_pred             eecC-CCeEEEEEC-CCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCE----EEEEeCCCcEEEEE
Q psy14458          3 SGHE-DSSCVLYDI-RGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRL----MVSGHEDSSCVLYD   76 (125)
Q Consensus         3 t~~~-d~~i~v~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~i~~~d   76 (125)
                      .++. ++.|.-+|+ .+++.+..+......-         ......+......++++|.+..    ++.++.++.|..+|
T Consensus        67 v~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~---------~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlD  137 (599)
T 1w6s_A           67 IHTSFPNNTFALGLDDPGTILWQDKPKQNPA---------ARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALN  137 (599)
T ss_dssp             EECSTTTCEEEEETTCTTSEEEEECCCCCGG---------GGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEE
T ss_pred             EEeCCCCEEEEEeCCCCCcEEEEECCCCCcc---------ccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEE
Confidence            3444 677777887 7777776655322100         0000000001122344333334    78888999999999


Q ss_pred             cCCCceeEEeCCCCC----ceeEEEEccCCCeEEEee-----cCCeEEEEeCCCCC
Q psy14458         77 IRGSRPLQTFKPHTA----DVRSIRFSPSAYYLLTGG-----YDNKLVLTDLQGTM  123 (125)
Q Consensus        77 ~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~-----~d~~i~~~~~~~~~  123 (125)
                      ..+++.+........    .+.+--.-.++..++..+     .++.|+.+|.+++.
T Consensus       138 a~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~  193 (599)
T 1w6s_A          138 AETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGE  193 (599)
T ss_dssp             TTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred             CCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCc
Confidence            999998877653221    222110111554444332     37899999998774

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.84  E-value=0.034  Score=38.45  Aligned_cols=72  Identities=15%  Similarity=0.233  Sum_probs=48.4

Q ss_pred             eEEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeEEeCCCCC-ceeEEEEccCCCeEEEee-cC-----CeEEEEeCCCC
Q psy14458         51 VSALCVDPSGRLMVSGH-EDSSCVLYDIRGSRPLQTFKPHTA-DVRSIRFSPSAYYLLTGG-YD-----NKLVLTDLQGT  122 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~-~d-----~~i~~~~~~~~  122 (125)
                      ..++++..++.+++.|+ .+..+++||..+.+....-..... .-.++...+++++++.|+ .+     ..+.+||..+.
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            34567778898888887 456799999987654332221222 223456667999999988 34     56889998764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.78  E-value=0.035  Score=33.63  Aligned_cols=73  Identities=5%  Similarity=-0.034  Sum_probs=46.6

Q ss_pred             CCeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCC-eEEEeecCCeEEEEeCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHE---DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAY-YLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~i~~~~~~~  121 (125)
                      .....++++|++..+..+..   .+.|..++.............-.....++++|++. ++++-...+.|..+++.+
T Consensus       122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g  198 (267)
T 1npe_A          122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ  198 (267)
T ss_dssp             SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred             CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence            45689999997655554443   36788888653322111222234567899999765 445556678899998864

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.70  E-value=0.0059  Score=41.73  Aligned_cols=81  Identities=20%  Similarity=0.251  Sum_probs=52.5

Q ss_pred             CCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEE
Q psy14458          6 EDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQT   85 (125)
Q Consensus         6 ~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~   85 (125)
                      .++.|.-||+.+++.+.......                     ....-.+...+.+++.++.|+.++.+|.++++.+..
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~---------------------~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~  522 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHL---------------------PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK  522 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESS---------------------CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CcceEEEEECCCCCEEEEecCCC---------------------CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE
Confidence            36788889998888776654321                     000001111366788899999999999999999998


Q ss_pred             eCCCCCce-eEEEEccCCCeEEE
Q psy14458         86 FKPHTADV-RSIRFSPSAYYLLT  107 (125)
Q Consensus        86 ~~~~~~~v-~~~~~~~~~~~~~~  107 (125)
                      ++...... .-+.|..+|+.+++
T Consensus       523 ~~~~~g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          523 FQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             EECSSCCCSCCEEEEETTEEEEE
T ss_pred             ecCCCCcccCceEEEECCEEEEE
Confidence            87433221 12666678864433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.68  E-value=0.044  Score=37.71  Aligned_cols=90  Identities=4%  Similarity=-0.014  Sum_probs=63.5

Q ss_pred             eecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEE-C-CCCCEEEEEe-------------
Q psy14458          3 SGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCV-D-PSGRLMVSGH-------------   67 (125)
Q Consensus         3 t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~~~~~~-------------   67 (125)
                      +...+.+|.+.|+.+.++...+.-..                   +.....+++ + |++.+++.++             
T Consensus       107 nd~~~~rVavIdl~t~~~~~ii~ip~-------------------g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l  167 (595)
T 1fwx_A          107 NDKANTRVARVRCDVMKCDAILEIPN-------------------AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM  167 (595)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECSS-------------------CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred             EcCCCCEEEEEECCCceEeeEEeCCC-------------------CCCCcceeeeecCCCcEEEEecccccccCCCCccc
Confidence            44456678888888887766443221                   145678887 4 8888888774             


Q ss_pred             -----CCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCC
Q psy14458         68 -----EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN  112 (125)
Q Consensus        68 -----~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~  112 (125)
                           .++.+.+.|..+.+....+.--. ....+.++|+|+++++.+.+.
T Consensus       168 ~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~s  216 (595)
T 1fwx_A          168 EDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNS  216 (595)
T ss_dssp             TCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCT
T ss_pred             ccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCc
Confidence                 34578999999988877776322 345688999999999988653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.62  E-value=0.053  Score=33.66  Aligned_cols=72  Identities=18%  Similarity=0.191  Sum_probs=49.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecC--CeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD--NKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d--~~i~~~~~~~~  122 (125)
                      .....+++++++.++++-..++.|..+|.... ....+. .......+++.++++++++....  ..+..++..++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g  105 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  105 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC
Confidence            46789999999987777768889999987653 332232 23467889999999877665442  24666665443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.60  E-value=0.0097  Score=40.57  Aligned_cols=81  Identities=14%  Similarity=0.061  Sum_probs=52.4

Q ss_pred             CCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEE
Q psy14458          6 EDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQT   85 (125)
Q Consensus         6 ~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~   85 (125)
                      .++.|..||+.+++.+..+....                     .+....+...+..++.++.++.++.+|.++++.+..
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~~---------------------~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~  500 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEKF---------------------AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN  500 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESS---------------------CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCCeEEEEECCCCCEEEEecCCC---------------------CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence            45788999998888777665321                     111111122456777789999999999999999988


Q ss_pred             eCCCCCc-eeEEEEccCCCeEEE
Q psy14458         86 FKPHTAD-VRSIRFSPSAYYLLT  107 (125)
Q Consensus        86 ~~~~~~~-v~~~~~~~~~~~~~~  107 (125)
                      +...... -.-+.+.++|+.++.
T Consensus       501 ~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          501 FKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             EECSSCCCSCCEEEEETTEEEEE
T ss_pred             EeCCCCcEeeeEEEEECCEEEEE
Confidence            8743221 122445567765544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.59  E-value=0.057  Score=33.68  Aligned_cols=71  Identities=15%  Similarity=0.163  Sum_probs=48.1

Q ss_pred             CeEEEEECC-CCCEEEEEeC-----------------CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeE-EEeec
Q psy14458         50 PVSALCVDP-SGRLMVSGHE-----------------DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYL-LTGGY  110 (125)
Q Consensus        50 ~i~~~~~~~-~~~~~~~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~  110 (125)
                      ....+++.+ ++.+.++-..                 ++.|..+|..+++...... .-...+.++++|+++.+ ++-+.
T Consensus       127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~  205 (322)
T 2fp8_A          127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFL  205 (322)
T ss_dssp             CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGG
T ss_pred             ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCC
Confidence            467899999 8887766432                 3678888877665332221 11234579999999855 45466


Q ss_pred             CCeEEEEeCCC
Q psy14458        111 DNKLVLTDLQG  121 (125)
Q Consensus       111 d~~i~~~~~~~  121 (125)
                      ++.|..+++.+
T Consensus       206 ~~~I~~~~~~~  216 (322)
T 2fp8_A          206 SHQIVKYWLEG  216 (322)
T ss_dssp             GTEEEEEESSS
T ss_pred             CCeEEEEECCC
Confidence            78899999874

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.38  E-value=0.017  Score=40.64  Aligned_cols=71  Identities=14%  Similarity=0.116  Sum_probs=48.3

Q ss_pred             CeEEEEEC-CCCCEEEEEeC-CC----cEEEEEcCCC-ceeEEeCCCCCceeEEEEccCCCeEEEeecC-----CeEEEE
Q psy14458         50 PVSALCVD-PSGRLMVSGHE-DS----SCVLYDIRGS-RPLQTFKPHTADVRSIRFSPSAYYLLTGGYD-----NKLVLT  117 (125)
Q Consensus        50 ~i~~~~~~-~~~~~~~~~~~-~~----~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-----~~i~~~  117 (125)
                      .+...+|| |++++++.+.. +|    .|+++|+.++ +.+..  .-......+.|+||++.|+....|     ..|..+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            57789999 99998765432 33    4999999988 63211  001123468999999888777664     357888


Q ss_pred             eCCCC
Q psy14458        118 DLQGT  122 (125)
Q Consensus       118 ~~~~~  122 (125)
                      ++.++
T Consensus       253 ~lgt~  257 (751)
T 2xe4_A          253 VMGKL  257 (751)
T ss_dssp             ETTSC
T ss_pred             ECCCC
Confidence            87664

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.36  E-value=0.076  Score=34.91  Aligned_cols=71  Identities=15%  Similarity=0.227  Sum_probs=49.4

Q ss_pred             CeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeEEeC-CCCCceeEEEEccCCC-eEEEeecCCeEEEEeCC
Q psy14458         50 PVSALCVDP-SGRLMVSGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIRFSPSAY-YLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        50 ~i~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~~~d~~i~~~~~~  120 (125)
                      ....++++| ++.++++-..++.|..++...+....... ........++|+|+++ ++++-.....|..++..
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            456788999 66766666677889999987665422222 1224467899999998 55555677889888765

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.29  E-value=0.093  Score=32.73  Aligned_cols=70  Identities=11%  Similarity=0.108  Sum_probs=44.7

Q ss_pred             CeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCc--eeEEeCCCCCceeEEEEccCCCeEEEeec----------CCeEEE
Q psy14458         50 PVSALCVDPSGRLMVSG-HEDSSCVLYDIRGSR--PLQTFKPHTADVRSIRFSPSAYYLLTGGY----------DNKLVL  116 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~-~~~~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------d~~i~~  116 (125)
                      ....++++|+++.+..+ ...+.|.++++....  ....+....+ ...+++.++|.++++...          .+.|..
T Consensus       186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~  264 (322)
T 2fp8_A          186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIK  264 (322)
T ss_dssp             CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEE
T ss_pred             cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEE
Confidence            45678999999865554 556889999987421  1111111223 667899999987777654          355666


Q ss_pred             EeCC
Q psy14458        117 TDLQ  120 (125)
Q Consensus       117 ~~~~  120 (125)
                      +|..
T Consensus       265 ~d~~  268 (322)
T 2fp8_A          265 FDEF  268 (322)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            6653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.24  E-value=0.13  Score=34.10  Aligned_cols=69  Identities=19%  Similarity=0.346  Sum_probs=51.1

Q ss_pred             CCCeEEEEECCC---CCEEEEEeCCCcEEEEEcCCC--ceeEEeC---------CCCCceeEEEEccCCCeEEEee--cC
Q psy14458         48 GSPVSALCVDPS---GRLMVSGHEDSSCVLYDIRGS--RPLQTFK---------PHTADVRSIRFSPSAYYLLTGG--YD  111 (125)
Q Consensus        48 ~~~i~~~~~~~~---~~~~~~~~~~~~i~~~d~~~~--~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~--~d  111 (125)
                      ..+|..+.|+|-   +..+++-..|+.|++||+...  ++. .+.         .....|.+++|.+++-.|...+  .+
T Consensus       124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~  202 (452)
T 3pbp_A          124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEG  202 (452)
T ss_dssp             CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTS
T ss_pred             CCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCC
Confidence            467999999995   568999999999999999862  122 222         2335688999999887776644  77


Q ss_pred             CeEEEE
Q psy14458        112 NKLVLT  117 (125)
Q Consensus       112 ~~i~~~  117 (125)
                      |.|+..
T Consensus       203 GDIYAl  208 (452)
T 3pbp_A          203 GDIFAF  208 (452)
T ss_dssp             CEEEEE
T ss_pred             CCEEEE
Confidence            777654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.16  E-value=0.14  Score=33.63  Aligned_cols=72  Identities=10%  Similarity=0.136  Sum_probs=45.0

Q ss_pred             CCeEEEEECCCCCEEEEEeC-CC----cEEEEEcCCCcee--EEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHE-DS----SCVLYDIRGSRPL--QTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~-~~----~i~~~d~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~  120 (125)
                      .....++++++++.++.+.. ++    .+...+. .+...  ..+. .......++++| ++.++++-..++.|..++..
T Consensus       179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~  256 (430)
T 3tc9_A          179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFT  256 (430)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred             CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            56789999999986655553 22    2333443 22211  2222 123356788999 77777777778889999886


Q ss_pred             CC
Q psy14458        121 GT  122 (125)
Q Consensus       121 ~~  122 (125)
                      ++
T Consensus       257 ~~  258 (430)
T 3tc9_A          257 TQ  258 (430)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.12  E-value=0.13  Score=32.78  Aligned_cols=73  Identities=10%  Similarity=0.099  Sum_probs=46.6

Q ss_pred             CCeEEEEECCCCCEEEEEe-CC-CcEEEEEcCCCceeEEe-CCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGH-ED-SSCVLYDIRGSRPLQTF-KPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~-~~-~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .....++++|.+..++... .. +.|+..+..... ...+ ...-...+.++++|++ .++++-+..+.|..+++...
T Consensus       159 ~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            4568999998665554443 44 678888765432 2223 2223456789999854 55555566788999988654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.02  E-value=0.15  Score=32.62  Aligned_cols=71  Identities=20%  Similarity=0.207  Sum_probs=51.2

Q ss_pred             CeEEEEECCCCCEEEEEeCC-CcEEEEEcCCCceeEEe--C----CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         50 PVSALCVDPSGRLMVSGHED-SSCVLYDIRGSRPLQTF--K----PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~--~----~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ....++..++|+..++++.. +.|...+.... .+..+  .    ......+.|.++|++..|+....++.+..+|+..
T Consensus       138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          138 GVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            47899999999999988877 87777765433 22222  1    1122356899999998777766699999999763

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.87  E-value=0.083  Score=37.03  Aligned_cols=73  Identities=14%  Similarity=0.063  Sum_probs=43.9

Q ss_pred             CCeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHE--DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~~  121 (125)
                      .....++++|.+..|+.+..  .+.|+..++............-...+.|+++|++ .++++-+..+.|..+++.+
T Consensus       496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            34567888886554444332  2677777654332222222222345679999864 5556666778899998864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=95.86  E-value=0.18  Score=32.17  Aligned_cols=74  Identities=15%  Similarity=0.170  Sum_probs=47.9

Q ss_pred             CCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccC-CCeEEEeecC-CeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSG-RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPS-AYYLLTGGYD-NKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d-~~i~~~~~~~~  122 (125)
                      .....+++++.+ .++++-...+.|.+.+.........+...-.....++++|. +.++++-..+ +.|...++...
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~  192 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS  192 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence            345688888754 44455556678999987654433333333355678999984 5555665555 78888887653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=95.79  E-value=0.2  Score=32.35  Aligned_cols=74  Identities=9%  Similarity=0.059  Sum_probs=47.6

Q ss_pred             CCeEEEEECCCCCEEEEEe-CC-CcEEEEEcCCCceeEEeCCCCCceeEEEEccC-CCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGH-ED-SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPS-AYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~-~~-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .....++++|.+..++... .. +.|+..+.............-...+.++++|+ +.++++-+..+.|..+++...
T Consensus       202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            4568899998766555444 33 67888886543333223323345678999985 455566667788999988653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=95.70  E-value=0.22  Score=32.16  Aligned_cols=94  Identities=12%  Similarity=0.064  Sum_probs=56.4

Q ss_pred             CCeEEEEecCcccccccCCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEcc-CCCeEE
Q psy14458         29 ADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMV-SGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP-SAYYLL  106 (125)
Q Consensus        29 ~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~  106 (125)
                      ..|+.+...+...............++|++....|+ +-...+.|+.++.........+.........+++.+ .+.+++
T Consensus        96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~  175 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW  175 (386)
T ss_dssp             SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEE
T ss_pred             ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEE
Confidence            344444444433333333335678999997655554 444667899998876543333332233456788887 455666


Q ss_pred             EeecCCeEEEEeCCCC
Q psy14458        107 TGGYDNKLVLTDLQGT  122 (125)
Q Consensus       107 ~~~~d~~i~~~~~~~~  122 (125)
                      +-...+.|.+.++.+.
T Consensus       176 ~d~~~~~I~~~~~dg~  191 (386)
T 3v65_B          176 TDSGTSRIEVANLDGA  191 (386)
T ss_dssp             EETTTTEEEECBTTSC
T ss_pred             EcCCCCeEEEEeCCCC
Confidence            6666778888887654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.58  E-value=0.22  Score=31.21  Aligned_cols=73  Identities=14%  Similarity=0.083  Sum_probs=46.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCC--CcEEEEEcCCCceeEEe-CCCCCceeEEEEccCCC-eEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHED--SSCVLYDIRGSRPLQTF-KPHTADVRSIRFSPSAY-YLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~  122 (125)
                      .....++++|.+..++.+...  +.|...+... .....+ ...-...+.++++|++. ++++-+..+.|..+|+.+.
T Consensus       120 ~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            467899999866655444432  6788887643 322222 22234567899998654 4555556788999998653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.46  E-value=0.42  Score=33.78  Aligned_cols=71  Identities=14%  Similarity=0.069  Sum_probs=48.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC----CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK----PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ..|.+++..+++..+-.|+.++-|..+|..+++......    .....|.++...+++.+.+... + -+..+|..+
T Consensus       406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~  480 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQ  480 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTT
T ss_pred             ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCC
Confidence            568899988888845556676779999988765433221    1245688898888887665543 4 477787654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.46  E-value=0.29  Score=31.85  Aligned_cols=74  Identities=15%  Similarity=0.076  Sum_probs=47.9

Q ss_pred             CCeEEEEECCCCCEEEEEe--CCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeE-EEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGH--EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYL-LTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~  122 (125)
                      .....++++|.+..++...  ..+.|+..+.............-...+.++++|++..| ++=+....|..+|+...
T Consensus       202 ~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          202 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            4578999999766555554  24678888875433333233233567789999865544 55456788999888654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.37  E-value=0.27  Score=30.97  Aligned_cols=74  Identities=16%  Similarity=0.133  Sum_probs=47.2

Q ss_pred             CCeEEEEECCCCCEEEEEe--CCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGH--EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .....++++|.+..++...  ..+.|+..+.............-...+.++++|++ .++++=+..+.|..+|+...
T Consensus       122 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~  198 (318)
T 3sov_A          122 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  198 (318)
T ss_dssp             SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence            4568899998765555554  35778888765332222222223446789999854 45555567788999988643

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=95.32  E-value=0.25  Score=30.29  Aligned_cols=72  Identities=10%  Similarity=0.155  Sum_probs=45.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce---eEEeC------CCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRP---LQTFK------PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      .....+++.+++.++++.-.++.+.++++.....   +....      ..+...-.++|+|++..+..+.+.....+|.+
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence            4567888888887666655667888888755331   12221      23445678999998876766666555455544


Q ss_pred             C
Q psy14458        120 Q  120 (125)
Q Consensus       120 ~  120 (125)
                      +
T Consensus       150 ~  150 (255)
T 3qqz_A          150 N  150 (255)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.09  E-value=0.33  Score=30.39  Aligned_cols=74  Identities=11%  Similarity=0.020  Sum_probs=45.6

Q ss_pred             CCeEEEEECCCCCEE-EEEeCCCcEEEEEcCC----CceeEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLM-VSGHEDSSCVLYDIRG----SRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~-~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .....++|++.+..+ .+-...+.|..++...    ......+...-.....+++++ ++.++++-...+.|.+.++.+.
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            467789999866544 4444568899998765    222222322223457888887 4555566667788888887653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.08  E-value=0.42  Score=31.52  Aligned_cols=73  Identities=8%  Similarity=0.080  Sum_probs=41.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCC---C-cEEEEEcCCCce-eEEeCCCCCceeEEEEcc-CCCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHED---S-SCVLYDIRGSRP-LQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~---~-~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .....++++++++++++-...   . .+...+...+.. ...+. .-.....++++| ++.++++-..++.|+.++..++
T Consensus       182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g  260 (433)
T 4hw6_A          182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG  260 (433)
T ss_dssp             SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred             CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence            568899999999944443311   1 123233221111 01111 123345688888 6777767667788888887643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.05  E-value=0.047  Score=32.99  Aligned_cols=67  Identities=15%  Similarity=0.123  Sum_probs=43.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce------eEEeC-CCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRP------LQTFK-PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      ..+..++|+|++.+.+.  .+|.++-.+..+.+.      ...+- .--..-.++.|.|+|.+.++  .||.|+-++-
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            46779999999887666  677777666544211      11110 00111368999999988888  6688877764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=94.98  E-value=0.65  Score=33.24  Aligned_cols=74  Identities=14%  Similarity=0.057  Sum_probs=47.5

Q ss_pred             CCeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeEEeCCCCCceeEEEEccCC-CeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHE--DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSA-YYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .....|+++|....|+....  .+.|...++........+...-.....|++++.+ +++++=.....|...++.+.
T Consensus       514 ~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          514 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            45789999997655555542  3678888875444333333333567889999754 44455456678888888654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.97  E-value=0.042  Score=35.15  Aligned_cols=106  Identities=8%  Similarity=0.098  Sum_probs=61.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCC-CCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPH-TADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG-HEDSSCVLYDIR   78 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~d~~   78 (125)
                      ++.++.||.|.-+|..+|+....+... ..+.....           . ...     ..++..++.. +.||.|+.++..
T Consensus        13 V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~-----------~-~~~-----~~~~~~~vv~p~~dG~l~a~~~~   75 (339)
T 2be1_A           13 LIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQ-----------E-PSR-----LETYETLIIEPFGDGNIYYFNAH   75 (339)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECC-----------C-SCT-----TTSSEEEEECCSTTTEEEEEETT
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEec-----------C-Ccc-----ccCCcEEEEEECCCCEEEEEECC
Confidence            367899999999999999998887643 11111000           0 000     0122333333 589999999988


Q ss_pred             CCceeEEeCC----CCCceeE---EEE-c----cCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         79 GSRPLQTFKP----HTADVRS---IRF-S----PSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        79 ~~~~~~~~~~----~~~~v~~---~~~-~----~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ++.....+..    ...++..   ... .    ..+..+++|+.++.+...|++++.
T Consensus        76 ~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~  132 (339)
T 2be1_A           76 QGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE  132 (339)
T ss_dssp             TEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred             CCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence            7754443331    1111110   000 0    045578889999999999988774

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.95  E-value=0.1  Score=36.07  Aligned_cols=70  Identities=20%  Similarity=0.223  Sum_probs=47.0

Q ss_pred             EEEECC-CCCEEEEEeCCC-----------cEEEEEcCCCce--eEEeC-CCCCceeEEEEccCCCeEEEeec-CCeEEE
Q psy14458         53 ALCVDP-SGRLMVSGHEDS-----------SCVLYDIRGSRP--LQTFK-PHTADVRSIRFSPSAYYLLTGGY-DNKLVL  116 (125)
Q Consensus        53 ~~~~~~-~~~~~~~~~~~~-----------~i~~~d~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-d~~i~~  116 (125)
                      ..++.+ +++.++.|+.+.           .+.+||..+++.  +..+. .+.....++++.+++++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556666 777888776432           578899887642  22332 23334445777889999999884 567999


Q ss_pred             EeCCCC
Q psy14458        117 TDLQGT  122 (125)
Q Consensus       117 ~~~~~~  122 (125)
                      ||..+.
T Consensus       270 yd~~t~  275 (656)
T 1k3i_A          270 YDSSSD  275 (656)
T ss_dssp             EEGGGT
T ss_pred             ecCcCC
Confidence            997653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=94.79  E-value=0.31  Score=32.12  Aligned_cols=71  Identities=11%  Similarity=0.096  Sum_probs=47.4

Q ss_pred             CeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeEEe-C-CCCCceeEEEEccCCC-eEEEeecCCeEEEEeCC
Q psy14458         50 PVSALCVDP-SGRLMVSGHEDSSCVLYDIRGSRPLQTF-K-PHTADVRSIRFSPSAY-YLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        50 ~i~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~-~~~~~v~~~~~~~~~~-~~~~~~~d~~i~~~~~~  120 (125)
                      ....++++| ++.++++-..++.|+.+|..++.....+ . .....-..++++|+++ ++++-.....|..+++.
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            345688888 6666666667788999998766542222 2 1122234699999998 55666677889998765

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.71  E-value=0.49  Score=30.53  Aligned_cols=73  Identities=16%  Similarity=0.280  Sum_probs=50.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcC-----CCceeEEeC-CC-CCceeEEEE--ccCCC-eEEEee-cCCeEEEE
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIR-----GSRPLQTFK-PH-TADVRSIRF--SPSAY-YLLTGG-YDNKLVLT  117 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~-----~~~~~~~~~-~~-~~~v~~~~~--~~~~~-~~~~~~-~d~~i~~~  117 (125)
                      ..+..+...+....|+.+-++.-|..++..     +++.+..+. .+ ...+..+.+  .++++ ++++.+ .+.++.+|
T Consensus       180 sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vy  259 (355)
T 3amr_A          180 SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIY  259 (355)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred             CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEE
Confidence            578888999988899999988777777754     234454442 22 235777776  45555 455444 78899999


Q ss_pred             eCCC
Q psy14458        118 DLQG  121 (125)
Q Consensus       118 ~~~~  121 (125)
                      |.+.
T Consensus       260 dr~~  263 (355)
T 3amr_A          260 DRQG  263 (355)
T ss_dssp             ESST
T ss_pred             ECCC
Confidence            9863

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=94.61  E-value=0.79  Score=32.44  Aligned_cols=69  Identities=16%  Similarity=0.152  Sum_probs=45.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC------CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK------PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ..|.++...+++.+.+...  +-+..||..+++......      .....|.++...++|.+.+... + -+..+|..+
T Consensus       452 ~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~  526 (795)
T 4a2l_A          452 ENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEG  526 (795)
T ss_dssp             SCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEET
T ss_pred             CeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCC
Confidence            5788999988888666554  458889987664332111      1235688898888887666554 4 477776543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=94.56  E-value=0.43  Score=29.24  Aligned_cols=72  Identities=13%  Similarity=0.218  Sum_probs=52.0

Q ss_pred             CCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeEEeCCC-CCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         49 SPVSALCVDPSGR-LMVSGHEDSSCVLYDIRGSRPLQTFKPH-TADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ..+..++++|++. +++....++.|...|.. ++.+..+... ....-.+++.+++.++++.-.++.+.++++..
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            5689999999765 55567788889999987 7776666421 23456788888887766655667788887654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=94.42  E-value=0.61  Score=34.05  Aligned_cols=39  Identities=10%  Similarity=0.120  Sum_probs=33.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK   87 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~   87 (125)
                      ..+.+++..++..++++-+.|+.+|+|++.+++++.+..
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            456777888888999999999999999999998877653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.41  E-value=0.61  Score=30.33  Aligned_cols=93  Identities=11%  Similarity=0.034  Sum_probs=54.3

Q ss_pred             CeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCC----ceeEEeCCCCCceeEEEEcc-CCC
Q psy14458         30 DVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG-HEDSSCVLYDIRGS----RPLQTFKPHTADVRSIRFSP-SAY  103 (125)
Q Consensus        30 ~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~-~~~  103 (125)
                      .|+.+...+............+..++|++....|+-. ...+.|+.+++...    .....+.........+++.+ .+.
T Consensus        93 ~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~  172 (400)
T 3p5b_L           93 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN  172 (400)
T ss_dssp             EEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE
T ss_pred             eeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc
Confidence            3444443333322223333677899999866555554 45677888887642    22222332334567788887 556


Q ss_pred             eEEEeecCCeEEEEeCCCC
Q psy14458        104 YLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus       104 ~~~~~~~d~~i~~~~~~~~  122 (125)
                      ++++-...+.|.+.++.+.
T Consensus       173 lY~~d~~~~~I~~~~~~g~  191 (400)
T 3p5b_L          173 IYWTDSVLGTVSVADTKGV  191 (400)
T ss_dssp             EEEEETTTTEEEEECTTTC
T ss_pred             eEEEECCCCeEEEEeCCCC
Confidence            6666667788888887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.40  E-value=0.59  Score=30.13  Aligned_cols=70  Identities=11%  Similarity=0.135  Sum_probs=45.2

Q ss_pred             CCeEEEEECCCCCEEEEEe-----------------CCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEE-eec
Q psy14458         49 SPVSALCVDPSGRLMVSGH-----------------EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLT-GGY  110 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~-----------------~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~  110 (125)
                      ...+.+++.+++.+.++..                 ..|.|+.+|.  ++ +..+...-..-+.++|+||++.+.. -+.
T Consensus       165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~  241 (355)
T 3sre_A          165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELL  241 (355)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCC
Confidence            4578899999998777754                 1245555554  22 2222112234578999999976655 456


Q ss_pred             CCeEEEEeCCC
Q psy14458        111 DNKLVLTDLQG  121 (125)
Q Consensus       111 d~~i~~~~~~~  121 (125)
                      .+.|..|++..
T Consensus       242 ~~~I~~~~~~~  252 (355)
T 3sre_A          242 AHKIHVYEKHA  252 (355)
T ss_dssp             GTEEEEEEECT
T ss_pred             CCeEEEEEECC
Confidence            88999999863

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=93.89  E-value=1.2  Score=31.55  Aligned_cols=71  Identities=10%  Similarity=0.114  Sum_probs=46.0

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCC-----CCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPH-----TADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ...|.++...+++.+.+.. . +-|..+|..+++........     ...|.++...++|.+.+....+| +..+|.++
T Consensus       449 ~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~  524 (781)
T 3v9f_A          449 LLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDM  524 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTC
T ss_pred             CCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCC
Confidence            3578899888887755544 4 55888998776543322212     35688998888887665544344 66677654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=93.85  E-value=0.6  Score=31.56  Aligned_cols=69  Identities=14%  Similarity=0.230  Sum_probs=45.5

Q ss_pred             eEEEEECCC-CCEEEEEeCCCcEEEEEcC-------CCce-----------eEE-eC-CCCCceeEEEEccCCCe-EEEe
Q psy14458         51 VSALCVDPS-GRLMVSGHEDSSCVLYDIR-------GSRP-----------LQT-FK-PHTADVRSIRFSPSAYY-LLTG  108 (125)
Q Consensus        51 i~~~~~~~~-~~~~~~~~~~~~i~~~d~~-------~~~~-----------~~~-~~-~~~~~v~~~~~~~~~~~-~~~~  108 (125)
                      ...++++|+ +.++++-..++.|+.+|+.       ++..           ... +. ........++|+|+++. +++-
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD  328 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV  328 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence            457788884 4556666677889999987       4432           111 21 22344578999999984 5555


Q ss_pred             ecCCeEEEEeC
Q psy14458        109 GYDNKLVLTDL  119 (125)
Q Consensus       109 ~~d~~i~~~~~  119 (125)
                      +....|+.++.
T Consensus       329 ~~~h~I~kid~  339 (496)
T 3kya_A          329 INNHYFMRSDY  339 (496)
T ss_dssp             TTTTEEEEEEE
T ss_pred             CCCCEEEEEec
Confidence            66778888654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=93.73  E-value=0.28  Score=34.47  Aligned_cols=72  Identities=18%  Similarity=0.170  Sum_probs=42.0

Q ss_pred             CeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCC-eEEEeecC-CeEEEEeCCC
Q psy14458         50 PVSALCVDPSG-RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAY-YLLTGGYD-NKLVLTDLQG  121 (125)
Q Consensus        50 ~i~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d-~~i~~~~~~~  121 (125)
                      ....+++.+.+ .++++-...+.|.+.++........+.........++++|.+. ++++-... +.|...++..
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG  528 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  528 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC
Confidence            35577887544 4445545667899998765443333332234457788988544 44443333 6777776654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=93.69  E-value=1.4  Score=31.69  Aligned_cols=74  Identities=18%  Similarity=0.210  Sum_probs=47.5

Q ss_pred             CCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccC-CCeEEEeecC-CeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGR-LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPS-AYYLLTGGYD-NKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d-~~i~~~~~~~~  122 (125)
                      .....|++.+.+. ++++-...+.|.+.++........+...-.....|+++|. +.++++-... ..|...++.+.
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~  547 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  547 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence            4567889987764 4455556788999998754433333333445788999986 4455554343 67888877653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=92.91  E-value=1.1  Score=28.63  Aligned_cols=71  Identities=15%  Similarity=0.128  Sum_probs=49.8

Q ss_pred             CeEEEEE---CCCCCEEEEEe-------------CCCcEEEEEcC---CCceeEEeCC--C-----------CCceeEEE
Q psy14458         50 PVSALCV---DPSGRLMVSGH-------------EDSSCVLYDIR---GSRPLQTFKP--H-----------TADVRSIR   97 (125)
Q Consensus        50 ~i~~~~~---~~~~~~~~~~~-------------~~~~i~~~d~~---~~~~~~~~~~--~-----------~~~v~~~~   97 (125)
                      ....+.+   .|++.+++...             .+..|..+|+.   +++.+.....  .           ......+.
T Consensus        64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva  143 (334)
T 2p9w_A           64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA  143 (334)
T ss_dssp             EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred             eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence            4578999   68877776544             26779999998   7776654431  1           12477899


Q ss_pred             EccCCCeEEEeecC-CeEEEEeCC
Q psy14458         98 FSPSAYYLLTGGYD-NKLVLTDLQ  120 (125)
Q Consensus        98 ~~~~~~~~~~~~~d-~~i~~~~~~  120 (125)
                      ..++|+..++++.. +.|...+..
T Consensus       144 vD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A          144 QDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             ECTTSCEEEEEEESSCEEEEECTT
T ss_pred             ECCCCCEEEeCCCCCCeEEEEeCC
Confidence            99999999988877 666655544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.47  E-value=1.1  Score=31.19  Aligned_cols=72  Identities=10%  Similarity=0.076  Sum_probs=52.5

Q ss_pred             CCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCce-------------eEEeCCCCCceeEEEEccCCCeEEEeecCCeE
Q psy14458         49 SPVSALCVDPSGRLMVSGH-EDSSCVLYDIRGSRP-------------LQTFKPHTADVRSIRFSPSAYYLLTGGYDNKL  114 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i  114 (125)
                      .....+.++|+|++++.++ -+.++.++|+.+-..             ....+ -.-...+.+|.++|....+.--|..|
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceE
Confidence            5567889999999886654 667799999874211             22222 23456789999999777777789999


Q ss_pred             EEEeCCC
Q psy14458        115 VLTDLQG  121 (125)
Q Consensus       115 ~~~~~~~  121 (125)
                      .-|++..
T Consensus       402 vkWni~~  408 (638)
T 3sbq_A          402 VKWNMEE  408 (638)
T ss_dssp             EEEEHHH
T ss_pred             EEEeccH
Confidence            9999753

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=92.08  E-value=2.3  Score=30.09  Aligned_cols=71  Identities=14%  Similarity=0.201  Sum_probs=46.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCC----CCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKP----HTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ..+.++...+++.+.+....+| +..+|..+++.. .+..    ....|.++...++|.+.++.. +|.+..+|.+++
T Consensus       495 ~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~  569 (781)
T 3v9f_A          495 NFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNF  569 (781)
T ss_dssp             SCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTC
T ss_pred             ceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCC
Confidence            5788999998888666553344 777887665433 3321    235688888888887665544 565477776543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=91.87  E-value=1.7  Score=28.13  Aligned_cols=71  Identities=10%  Similarity=0.200  Sum_probs=50.3

Q ss_pred             CCeEEEEE--CCC-CC-EEEEEeCCCcEEEEEcC-------CCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEE
Q psy14458         49 SPVSALCV--DPS-GR-LMVSGHEDSSCVLYDIR-------GSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLT  117 (125)
Q Consensus        49 ~~i~~~~~--~~~-~~-~~~~~~~~~~i~~~d~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~  117 (125)
                      ..+..+|+  +|. +. +++....+|.+..|++.       +.+.+..|. ....+-.+...+....|..+-++.-|..+
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~  206 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYGRLYIAEEDEAIWKF  206 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCCeEEEecccceEEEE
Confidence            45667777  774 43 57777888999998883       235667776 34567778888877888888888666666


Q ss_pred             eCC
Q psy14458        118 DLQ  120 (125)
Q Consensus       118 ~~~  120 (125)
                      +.+
T Consensus       207 da~  209 (355)
T 3amr_A          207 SAE  209 (355)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.52  E-value=1.5  Score=26.86  Aligned_cols=64  Identities=20%  Similarity=0.109  Sum_probs=36.0

Q ss_pred             CCCEEEEEeCC-----CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecC-----CeEEEEeCCCC
Q psy14458         59 SGRLMVSGHED-----SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD-----NKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~  122 (125)
                      ++..++.|+.+     ..+.+||..+.+....-........+....-++++++.|+.+     ..+.+||+++.
T Consensus       206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            45566666543     568999998765433221111111111222277788888765     45788888764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=91.33  E-value=2.4  Score=28.76  Aligned_cols=71  Identities=8%  Similarity=0.091  Sum_probs=44.6

Q ss_pred             CCeEEEEE-------CCCCCEEEEEeCCC-------cEEEEEcCC-Ccee-----EEeCCCCCceeEEEEcc-CCCeEEE
Q psy14458         49 SPVSALCV-------DPSGRLMVSGHEDS-------SCVLYDIRG-SRPL-----QTFKPHTADVRSIRFSP-SAYYLLT  107 (125)
Q Consensus        49 ~~i~~~~~-------~~~~~~~~~~~~~~-------~i~~~d~~~-~~~~-----~~~~~~~~~v~~~~~~~-~~~~~~~  107 (125)
                      .....++|       ++++..++.+...+       .+.+++... +...     ..+.. -.....++.+| ++.++++
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvt  264 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFN  264 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEE
Confidence            35789999       99998666665544       266665333 1211     12221 12345788899 5566666


Q ss_pred             eecCCeEEEEeCC
Q psy14458        108 GGYDNKLVLTDLQ  120 (125)
Q Consensus       108 ~~~d~~i~~~~~~  120 (125)
                      -..++.|..+|+.
T Consensus       265 d~~~g~V~r~d~~  277 (496)
T 3kya_A          265 SYEKGQVFRLDLV  277 (496)
T ss_dssp             ETTTTEEEEECHH
T ss_pred             ECCCCEEEEEecc
Confidence            7778889999986

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=90.41  E-value=2.3  Score=27.08  Aligned_cols=69  Identities=14%  Similarity=0.223  Sum_probs=43.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc--eeEEeC---CCCCceeEEEEccC----CCeEEEeecC-----CeE
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR--PLQTFK---PHTADVRSIRFSPS----AYYLLTGGYD-----NKL  114 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~---~~~~~v~~~~~~~~----~~~~~~~~~d-----~~i  114 (125)
                      .....+++.|++.++++ ...+.|++++  .++  .+..+.   ........++++|+    +.++++-..+     ..|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            45679999999985555 5669999998  333  222222   12345788999998    4555554432     456


Q ss_pred             EEEeCC
Q psy14458        115 VLTDLQ  120 (125)
Q Consensus       115 ~~~~~~  120 (125)
                      ..++..
T Consensus       108 ~r~~~~  113 (352)
T 2ism_A          108 VRLRHL  113 (352)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            666654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=90.03  E-value=2.2  Score=26.31  Aligned_cols=73  Identities=19%  Similarity=0.255  Sum_probs=44.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCC--cEEEEEcCCCceeEEeC-CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDS--SCVLYDIRGSRPLQTFK-PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      .....+++.++++++++.....  .|..+|..+++...... ........++..+++..+++-..++.|..+|..+
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~  147 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ  147 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence            4678999999998666554332  46677777665432222 1222234455555655566655688888888754

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.98  E-value=0.5  Score=35.15  Aligned_cols=38  Identities=11%  Similarity=0.115  Sum_probs=31.2

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC
Q psy14458         50 PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK   87 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~   87 (125)
                      .+.+++..++..++++-+.|+.+|+|++.+++++.+..
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            44556667788999999999999999999998777644

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=89.75  E-value=1.5  Score=28.07  Aligned_cols=62  Identities=10%  Similarity=0.087  Sum_probs=41.1

Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeEEeCCC-CCceeEEEE--cc-CCCeEEEe-ecCCeEEEEeCCCC
Q psy14458         61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPH-TADVRSIRF--SP-SAYYLLTG-GYDNKLVLTDLQGT  122 (125)
Q Consensus        61 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~--~~-~~~~~~~~-~~d~~i~~~~~~~~  122 (125)
                      ..++.++.||.|+-+|..+|+....++.. ..++....-  .+ ++..++.. +.||.+..++..++
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G   77 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG   77 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC
Confidence            46788999999999999999998888743 122221110  01 33344444 57999998887665

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=88.82  E-value=3.2  Score=26.51  Aligned_cols=70  Identities=17%  Similarity=0.312  Sum_probs=43.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc-eeEEeC---CCCCceeEEEEccC----CCeEEEeec---C----Ce
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR-PLQTFK---PHTADVRSIRFSPS----AYYLLTGGY---D----NK  113 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~---~~~~~v~~~~~~~~----~~~~~~~~~---d----~~  113 (125)
                      .....+++.|++.++++ ..++.|++++ .+++ .+..+.   ........++++|+    +.++++-+.   +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            45689999999985555 5669999887 3444 222221   12345788999997    555555442   3    45


Q ss_pred             EEEEeCC
Q psy14458        114 LVLTDLQ  120 (125)
Q Consensus       114 i~~~~~~  120 (125)
                      |..++..
T Consensus       107 v~r~~~~  113 (354)
T 3a9g_A          107 VIRGRLD  113 (354)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            6666554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=88.77  E-value=4.5  Score=28.16  Aligned_cols=74  Identities=12%  Similarity=0.001  Sum_probs=48.1

Q ss_pred             CCeEEEEECCCCCEEEE-EeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccC-CCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVS-GHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPS-AYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .....++|++....++- -..++.|+.+++........+.........+++.+. ++++++-...+.|.+.++.+.
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~  112 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ  112 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence            45778999987655544 446688888887654333333322234667888874 455566666788888888654

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=88.43  E-value=4.6  Score=28.06  Aligned_cols=59  Identities=25%  Similarity=0.340  Sum_probs=39.6

Q ss_pred             CeEEEEECCCCCEEEEEeCC------------CcEEEEEcCCCceeEEeC-CCCCceeEEEEccCCCeEEEe
Q psy14458         50 PVSALCVDPSGRLMVSGHED------------SSCVLYDIRGSRPLQTFK-PHTADVRSIRFSPSAYYLLTG  108 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~------------~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~  108 (125)
                      ..--|+|+|.+.+++.-+.+            +.+.+.+..+++...-+. ....+++.++|+||++.|...
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            34678999999977765532            234555555566544443 345689999999999877654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=88.17  E-value=3.1  Score=25.53  Aligned_cols=64  Identities=17%  Similarity=0.115  Sum_probs=34.7

Q ss_pred             CCCEEEEEeCC------CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec---------CCeEEEEeCCCC
Q psy14458         59 SGRLMVSGHED------SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY---------DNKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------d~~i~~~~~~~~  122 (125)
                      ++.+++.|+.+      ..+.+||..+.+....-........+.....++++++.|+.         -..+..||+.+.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            45566666544      45889998876543321111111111112237777777764         244778887654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=88.09  E-value=3.1  Score=25.50  Aligned_cols=64  Identities=11%  Similarity=0.111  Sum_probs=36.0

Q ss_pred             CCCEEEEEeCC----CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecC------CeEEEEeCCCC
Q psy14458         59 SGRLMVSGHED----SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD------NKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~  122 (125)
                      ++.+++.|+.+    ..+.+||..+.+....-........+....-++++++.|+.+      ..+.+||..+.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~  128 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTE  128 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence            45566666644    668889988765433222111111111122277788888765      45888887654

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=88.06  E-value=1.7  Score=30.95  Aligned_cols=37  Identities=14%  Similarity=0.250  Sum_probs=29.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK   87 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~   87 (125)
                      ..|.++.+  +..++++-+.|..+|+|++.+++++....
T Consensus       222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D  258 (729)
T 3f7f_A          222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD  258 (729)
T ss_dssp             CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence            34665555  47799999999999999999998776654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.52  E-value=1.1  Score=32.84  Aligned_cols=32  Identities=25%  Similarity=0.240  Sum_probs=27.0

Q ss_pred             ceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         92 DVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        92 ~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+.++...++..++++-+.|+++++|++.++.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~  268 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ  268 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCC
Confidence            45667777788899999999999999998763

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=87.16  E-value=4.2  Score=25.93  Aligned_cols=59  Identities=10%  Similarity=0.111  Sum_probs=37.1

Q ss_pred             CCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCce---eEEe----CCCCCceeEEEEccC----CCeEEEee
Q psy14458         49 SPVSALCVDPSGR-LMVSGHEDSSCVLYDIRGSRP---LQTF----KPHTADVRSIRFSPS----AYYLLTGG  109 (125)
Q Consensus        49 ~~i~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~---~~~~----~~~~~~v~~~~~~~~----~~~~~~~~  109 (125)
                      .....|++.|+++ +++ +...|.|++++.. +..   +..+    .........++++|+    +.++++-+
T Consensus        18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~   88 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYS   88 (353)
T ss_dssp             SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred             CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence            4567999999998 554 4567999999843 321   1111    112345678999995    55555543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=87.06  E-value=5.9  Score=27.54  Aligned_cols=74  Identities=15%  Similarity=0.097  Sum_probs=45.2

Q ss_pred             CCeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeEEeCCCCCceeEEEEccC-CCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHE--DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPS-AYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .....++++|.+..++....  .+.|...+.............-...+.++++++ ++++++-...+.|...|+.+.
T Consensus       127 ~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          127 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred             CCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence            45678899987655555442  456666665433222222223345678999985 455555566778888887653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=86.83  E-value=3.8  Score=25.08  Aligned_cols=62  Identities=15%  Similarity=0.119  Sum_probs=34.6

Q ss_pred             CCCEEEEEeC-------CCcEEEEEcCCCceeEE--eCCCCCceeEEEEccCCCeEEEeecC-----CeEEEEeCCCC
Q psy14458         59 SGRLMVSGHE-------DSSCVLYDIRGSRPLQT--FKPHTADVRSIRFSPSAYYLLTGGYD-----NKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~-------~~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~  122 (125)
                      ++..++.|+.       ...+.+||..+.+....  +.........+.+  ++++++.|+.+     ..+.+||+.+.
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence            4555565543       24588999887653332  2111111122222  77888888764     35888888754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=86.74  E-value=3.7  Score=24.93  Aligned_cols=60  Identities=15%  Similarity=0.179  Sum_probs=40.5

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCce------eEEe-CCCCCceeEEEEccCCCeEEEeecCCeEE
Q psy14458         52 SALCVDPSGRLMVSGHEDSSCVLYDIRGSRP------LQTF-KPHTADVRSIRFSPSAYYLLTGGYDNKLV  115 (125)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~i~  115 (125)
                      .++.|.|++.+.++  .||.|+-++..+...      ...+ ..--+.+..+.+.|+|.+.+..  |+.++
T Consensus        91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A           91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             eEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            68899999998888  559888777543211      1111 1122467899999999888777  67654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=86.51  E-value=8.8  Score=29.00  Aligned_cols=69  Identities=12%  Similarity=0.134  Sum_probs=45.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce--eEEeCCCCCceeEEEEccC------CCeEEEeec-CCeEEEEeC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRP--LQTFKPHTADVRSIRFSPS------AYYLLTGGY-DNKLVLTDL  119 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~~~------~~~~~~~~~-d~~i~~~~~  119 (125)
                      ..|...+.+.  .+++.++ .+.+.++++..++.  .... .-...|.|+++.|.      ..+++.|.. |++++++++
T Consensus       514 ~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL  589 (1158)
T 3ei3_A          514 KNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL  589 (1158)
T ss_dssp             CCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred             CEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC
Confidence            4566666543  4566664 56777777765432  2222 23567999998763      478888885 999999998


Q ss_pred             CC
Q psy14458        120 QG  121 (125)
Q Consensus       120 ~~  121 (125)
                      ..
T Consensus       590 ~~  591 (1158)
T 3ei3_A          590 PS  591 (1158)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=86.37  E-value=4  Score=24.96  Aligned_cols=64  Identities=16%  Similarity=0.119  Sum_probs=35.7

Q ss_pred             CCCEEEEEeCC-----CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCC-----eEEEEeCCCC
Q psy14458         59 SGRLMVSGHED-----SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN-----KLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~  122 (125)
                      ++.+++.|+.+     ..+.+||..+.+....-........+.....++++++.|+.++     .+.+||+.+.
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            45666666543     4688999887654332111111111112222778888887653     4888888754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=85.48  E-value=6.2  Score=26.27  Aligned_cols=61  Identities=11%  Similarity=0.230  Sum_probs=39.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce--eEEeCC------CCCceeEEEEcc----CCCeEEEee
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRP--LQTFKP------HTADVRSIRFSP----SAYYLLTGG  109 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~------~~~~v~~~~~~~----~~~~~~~~~  109 (125)
                      .....|+|.|++.++++-...+.|++++..+++.  +..+..      .......++|+|    ++.+.++-+
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence            4567999999999777765445788887654432  223321      234567899999    455555544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=85.46  E-value=4.5  Score=24.69  Aligned_cols=62  Identities=23%  Similarity=0.201  Sum_probs=34.5

Q ss_pred             CCCEEEEEeCC-----CcEEEEEcCCCcee--EEeCCCCCceeEEEEccCCCeEEEeecC-----CeEEEEeCCCC
Q psy14458         59 SGRLMVSGHED-----SSCVLYDIRGSRPL--QTFKPHTADVRSIRFSPSAYYLLTGGYD-----NKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~-----~~i~~~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~  122 (125)
                      ++..++.|+.+     ..+.+||..+.+..  ..+.........+.  .++++++.|+.+     ..+..+|+.+.
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~  185 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTG  185 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCC
Confidence            45566666533     35888998776532  22221111112222  277788887754     45788887654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=85.28  E-value=6.8  Score=26.55  Aligned_cols=71  Identities=6%  Similarity=-0.037  Sum_probs=52.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      +..-++..++....+..-+.-|.+++||+.++.++..-+-....|..-+.+....-++.....|.+.-..+
T Consensus       259 DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v  329 (494)
T 1bpo_A          259 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCV  329 (494)
T ss_dssp             CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEE
T ss_pred             CceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEE
Confidence            44567888888888999999999999999999998877766666665555555455555567776654443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=84.93  E-value=5.9  Score=25.56  Aligned_cols=59  Identities=12%  Similarity=0.196  Sum_probs=39.5

Q ss_pred             CeEEEEECCCCCEEEEEe-CCCcEEEEEcCC-Cce--eEEeCCCCCceeEEEEcc-CCCeEEEee
Q psy14458         50 PVSALCVDPSGRLMVSGH-EDSSCVLYDIRG-SRP--LQTFKPHTADVRSIRFSP-SAYYLLTGG  109 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~-~~~~i~~~d~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~~~~~~  109 (125)
                      ..+.++|+|+++.+..+. ..+.|+.|++.. ++.  ...+. .....-.++..+ +|++.+++.
T Consensus       222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEE
T ss_pred             ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEec
Confidence            457899999997766554 567899999863 321  22332 234556788888 588777654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=83.62  E-value=5.8  Score=24.47  Aligned_cols=62  Identities=13%  Similarity=0.228  Sum_probs=34.0

Q ss_pred             CCCEEEEEeCCC-----cEEEEEcCCCceeEEeC--CCCCceeEEEEccCCCeEEEeecCC--------------eEEEE
Q psy14458         59 SGRLMVSGHEDS-----SCVLYDIRGSRPLQTFK--PHTADVRSIRFSPSAYYLLTGGYDN--------------KLVLT  117 (125)
Q Consensus        59 ~~~~~~~~~~~~-----~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~--------------~i~~~  117 (125)
                      ++.+++.|+.++     .+.+||..+.+....-.  ........+.+  ++++++.|+.++              .+.+|
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~y  273 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRY  273 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEe
Confidence            455666665443     47889988765333221  11111122222  677788777532              36778


Q ss_pred             eCCCC
Q psy14458        118 DLQGT  122 (125)
Q Consensus       118 ~~~~~  122 (125)
                      |+.+.
T Consensus       274 d~~~~  278 (315)
T 4asc_A          274 NEEEK  278 (315)
T ss_dssp             ETTTT
T ss_pred             cCCCC
Confidence            87654

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=83.39  E-value=2.6  Score=30.01  Aligned_cols=30  Identities=20%  Similarity=0.192  Sum_probs=24.2

Q ss_pred             ceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         92 DVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        92 ~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .|.++.+  +..++++-+.|.++++|++.++.
T Consensus       223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~  252 (729)
T 3f7f_A          223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFT  252 (729)
T ss_dssp             EEEEEEE--TTTEEEEEETTCEEEEEETTTTE
T ss_pred             eEEEecc--CCcEEEEEEcCCeEEEEEcCCCc
Confidence            3555544  67899999999999999998864

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=83.26  E-value=13  Score=28.16  Aligned_cols=73  Identities=25%  Similarity=0.186  Sum_probs=48.0

Q ss_pred             CCCeEEEEECCC------CCEEEEEeC-CCcEEEEEcCCCceeEEeCC-CCCceeEEEEcc--CCCeEEEeecCCeEEEE
Q psy14458         48 GSPVSALCVDPS------GRLMVSGHE-DSSCVLYDIRGSRPLQTFKP-HTADVRSIRFSP--SAYYLLTGGYDNKLVLT  117 (125)
Q Consensus        48 ~~~i~~~~~~~~------~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~~~~~~~d~~i~~~  117 (125)
                      ...|.|+++.|.      ..+++.|.. |++++++++.+.+.+..... ......++.+..  ...++..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            357899998863      368899986 99999999987665543321 122344444332  33577888889987655


Q ss_pred             eCC
Q psy14458        118 DLQ  120 (125)
Q Consensus       118 ~~~  120 (125)
                      .+.
T Consensus       633 ~~d  635 (1158)
T 3ei3_A          633 GLN  635 (1158)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.19  E-value=1.2  Score=33.15  Aligned_cols=31  Identities=26%  Similarity=0.248  Sum_probs=25.6

Q ss_pred             eeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         93 VRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        93 v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.++...++..++++-+.|+++++|++.++.
T Consensus       240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~  270 (1139)
T 4fhn_B          240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ  270 (1139)
T ss_dssp             BSCCEEETTTTEEEEEBTTCEEEEEETTTTE
T ss_pred             eEEeeccCCccEEEEEeCCCEEEEEECCCCC
Confidence            4455666788899999999999999998763

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=82.42  E-value=7  Score=24.53  Aligned_cols=73  Identities=7%  Similarity=-0.040  Sum_probs=46.1

Q ss_pred             CCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGH-EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .....+++++++..|..+. ..+.|..+|...................+++. .+.++.+-...+.|..++..++
T Consensus       166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCC
Confidence            4568999999766665554 56779999876433222222233445567764 3456666667788888887554

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=81.94  E-value=11  Score=26.34  Aligned_cols=60  Identities=22%  Similarity=0.274  Sum_probs=41.2

Q ss_pred             CCeEEEEECCCCCEEEEEeC------------CCcEEEEEcCCCceeEEeCC-CCCceeEEEEccCCCeEEEe
Q psy14458         49 SPVSALCVDPSGRLMVSGHE------------DSSCVLYDIRGSRPLQTFKP-HTADVRSIRFSPSAYYLLTG  108 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~------------~~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~  108 (125)
                      .....+.|+++|.+.+..+.            .+.+..++..+++....+.. ....++.++|+||++.|...
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence            34678999999988875432            22566677666765444432 34578999999999877664

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=81.18  E-value=7.5  Score=24.01  Aligned_cols=62  Identities=13%  Similarity=0.171  Sum_probs=33.6

Q ss_pred             CCCEEEEEeC------CCcEEEEEcCCCceeEEe--CCCCCceeEEEEccCCCeEEEeecC-----CeEEEEeCCCC
Q psy14458         59 SGRLMVSGHE------DSSCVLYDIRGSRPLQTF--KPHTADVRSIRFSPSAYYLLTGGYD-----NKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~------~~~i~~~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~  122 (125)
                      ++.+++.|+.      ...+.+||..+.+....-  .........+.+  ++++++.|+.+     ..+.+||+.+.
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCC
Confidence            4555566543      245899998876533321  111111122222  67777777653     34667887654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=80.35  E-value=11  Score=25.54  Aligned_cols=70  Identities=13%  Similarity=0.238  Sum_probs=48.4

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCCC
Q psy14458         52 SALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      .+.-++|..+.++.-. ...+.++|+.+.+.+..+.. ...|.--.|-.+. .|+-. .+..++-|++.+...|
T Consensus        69 dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~lV-T~taVyHWsi~~~s~P  138 (494)
T 1bpo_A           69 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQP  138 (494)
T ss_dssp             SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEEEE-CSSEEEEEESSSSCCC
T ss_pred             ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEEEE-cCCeeEEecccCCCCc
Confidence            4566888888777764 77899999999999888874 3456666664432 33333 2456889998765444

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=80.05  E-value=13  Score=25.98  Aligned_cols=74  Identities=14%  Similarity=0.167  Sum_probs=45.3

Q ss_pred             CCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEcc-CCCeEEEeec-CCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGR-LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP-SAYYLLTGGY-DNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~-d~~i~~~~~~~~  122 (125)
                      .....+++++.+. ++.+-...+.|.+.++........+...-.....++++| +|.++.+-.. .+.|...++.+.
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~  156 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS  156 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC
Confidence            3467888887654 445555667899998765433222322334567899998 4555555423 567777776544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	125
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-20
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.004
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.9 bits (203), Expect = 1e-20
 Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 24/142 (16%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLD----------------------- 37
            VSG  D+S  L+D+R     QTF  H +D+ +I                          
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258

Query: 38  -HYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI 96
               T +       ++++    SGRL+++G++D +C ++D   +        H   V  +
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318

Query: 97  RFSPSAYYLLTGGYDNKLVLTD 118
             +     + TG +D+ L + +
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (131), Expect = 1e-10
 Identities = 25/67 (37%), Positives = 34/67 (50%)

Query: 50  PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGG 109
            V +L + P  RL VSG  D+S  L+D+R     QTF  H +D+ +I F P+     TG 
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245

Query: 110 YDNKLVL 116
            D    L
Sbjct: 246 DDATCRL 252

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.6 bits (88), Expect = 6e-05
 Identities = 11/57 (19%), Positives = 27/57 (47%)

Query: 49  SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYL 105
           + + A+      RL+VS  +D   +++D   +  +      ++ V +  ++PS  Y+
Sbjct: 56  AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.6 bits (88), Expect = 7e-05
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 81  RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKL 114
           R  +T + H A + ++ +   +  L++   D KL
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL 79

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (174), Expect = 1e-16
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 20/118 (16%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           ++SG  D +  ++D+     L T   H                     + V  +     G
Sbjct: 220 LLSGSRDKTIKMWDVSTGMCLMTLVGHD--------------------NWVRGVLFHSGG 259

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD 118
           + ++S  +D +  ++D +  R ++T   H   V S+ F  +A Y++TG  D  + + +
Sbjct: 260 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.6 bits (166), Expect = 2e-15
 Identities = 20/120 (16%), Positives = 43/120 (35%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           + S   D +  ++ +         + H   V  I     ++ +   + +          G
Sbjct: 158 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 217

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
             ++SG  D +  ++D+     L T   H   VR + F     ++L+   D  L + D +
Sbjct: 218 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 7e-08
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 22/142 (15%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGS----------- 49
           MVS  ED++  ++D       +T K HT  V+ I  DH      +               
Sbjct: 32  MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 91

Query: 50  -----------PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRF 98
                       VS++ + P+G  +VS   D +  +++++    ++TF  H   VR +R 
Sbjct: 92  ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 151

Query: 99  SPSAYYLLTGGYDNKLVLTDLQ 120
           +     + +   D  + +  + 
Sbjct: 152 NQDGTLIASCSNDQTVRVWVVA 173

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 2e-07
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 49  SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYY 104
           SPV+ +   P   +MVS  ED++  ++D       +T K HT  V+ I F  S   
Sbjct: 18  SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 3e-05
 Identities = 7/44 (15%), Positives = 15/44 (34%)

Query: 77  IRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           I           H + V  + F P    +++   D  + + D +
Sbjct: 4   IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE 47

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 7e-13
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           +VSG  D S  L++++ +      K   +    +    +           V ++    + 
Sbjct: 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK--------DFVLSVATTQND 320

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI------RFSPSAYYLLTGGYDNKL 114
             ++SG +D   + +D +   PL   + H   V S+         P      TG  D K 
Sbjct: 321 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 380

Query: 115 VLTDLQ 120
            +   +
Sbjct: 381 RIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 1e-08
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 25/132 (18%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           + +G  D +  ++D      ++                   E+GT     V ++     G
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSEN-------------ESGTGHKDSVYSVVFTRDG 266

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQ------------TFKPHTADVRSIRFSPSAYYLLTG 108
           + +VSG  D S  L++++ +                T+  H   V S+  + +  Y+L+G
Sbjct: 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 326

Query: 109 GYDNKLVLTDLQ 120
             D  ++  D +
Sbjct: 327 SKDRGVLFWDKK 338

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 9e-06
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 55  CVDPSGRLMVSGHEDSSCVLYDIRGSR-------PLQTFKPHTADVRSIRFSPSAYYLLT 107
                G+ + +G  D +  ++D              ++   H   V S+ F+     +++
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271

Query: 108 GGYDNKLVLTDLQG 121
           G  D  + L +LQ 
Sbjct: 272 GSLDRSVKLWNLQN 285

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (80), Expect = 8e-04
 Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 24/112 (21%)

Query: 17  GSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYD 76
            +     + P       + L H + +      S V  +     G  + +G  + +  +Y 
Sbjct: 36  TNDYYILYNPALPREIDVEL-HKSLD----HTSVVCCVKFSNDGEYLATGC-NKTTQVYR 89

Query: 77  IRGSRPLQTFKP------------------HTADVRSIRFSPSAYYLLTGGY 110
           +     +                           +RS+ FSP   +L TG  
Sbjct: 90  VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 141

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.4 bits (77), Expect = 0.002
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 49  SPVSALCVDPSGRLM---VSGHEDSSCVLYDIRGSR----PLQTFKPHTADVRSIRFSPS 101
            P+    +D   + +   +    +   +LY+    R     L     HT+ V  ++FS  
Sbjct: 14  KPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND 73

Query: 102 AYYLLTGGYDN 112
             YL TG    
Sbjct: 74  GEYLATGCNKT 84

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.3 bits (144), Expect = 2e-12
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 50  PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRP--LQTFKPHTADVRSIRFSPSAYYLLT 107
           P+S    +     +     +    +Y+  G++   +   K H   V  + ++P +  ++T
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 108 GGYDNKLVLTD 118
            G D    +  
Sbjct: 69  CGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.2 bits (79), Expect = 0.001
 Identities = 8/78 (10%), Positives = 22/78 (28%), Gaps = 22/78 (28%)

Query: 1  MVSGHEDSSCVLYDIRGSRP--LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP 58
          +     +    +Y+  G++   +   K H                       V+ +   P
Sbjct: 22 IAICPNNHEVHIYEKSGNKWVQVHELKEHN--------------------GQVTGVDWAP 61

Query: 59 SGRLMVSGHEDSSCVLYD 76
              +V+   D +  ++ 
Sbjct: 62 DSNRIVTCGTDRNAYVWT 79

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 1e-10
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 53  ALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
           +L     G+  VS  +D+    +       +   K  ++ V S   S    Y++TG  D 
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDK 328

Query: 113 KLVLTDL 119
           K  + ++
Sbjct: 329 KATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 7e-06
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 48  GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQT-----FKPHTADVRSIRFSPSA 102
           G  V A+ +    R + +G       ++DI                    +RS +  P  
Sbjct: 51  GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 103 YYLLTGGYDN 112
             L+ GG  +
Sbjct: 110 CTLIVGGEAS 119

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 8e-05
 Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 21/77 (27%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
            VS  +D+    +       +   K                       S V +  +    
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSKES---------------------SSVLSCDISVDD 318

Query: 61  RLMVSGHEDSSCVLYDI 77
           + +V+G  D    +Y++
Sbjct: 319 KYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 2e-04
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 48  GSPVSALCVDPSGRLMVSGHEDSSCVLYDI-RGSRPLQTFKPHTADVRSIRFSPSAYYLL 106
             P  +  V   G++        + +   I R +R + T   H   V ++  S    ++ 
Sbjct: 9   SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVY 67

Query: 107 TGGYDNKLVLTDLQGTMRP 125
           TGG    + + D+      
Sbjct: 68  TGG-KGCVKVWDISHPGNK 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.1 bits (128), Expect = 3e-10
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 44  GTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAY 103
            T +G+ V  L   P+G  +   +  +S     +      + +  H+      + SPS Y
Sbjct: 14  RTARGTAVV-LGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY 71

Query: 104 YLLTGGYDNKL 114
           Y  +G     +
Sbjct: 72  YCASGDVHGNV 82

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 4e-07
 Identities = 10/116 (8%), Positives = 31/116 (26%), Gaps = 1/116 (0%)

Query: 5   HEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMV 64
              +                  +  D     +    +         V  L   P G  + 
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 254

Query: 65  SGHEDSSCVLYDIRGSRPLQTFKPHT-ADVRSIRFSPSAYYLLTGGYDNKLVLTDL 119
           S   D +  ++++   +  +T    T  + + +    +   L++   +  +   + 
Sbjct: 255 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 34.5 bits (77), Expect = 0.002
 Identities = 7/77 (9%), Positives = 21/77 (27%), Gaps = 19/77 (24%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           + S   D +  ++++   +  +T    T                         L +  + 
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGT-------------------RIEDQQLGIIWTK 293

Query: 61  RLMVSGHEDSSCVLYDI 77
           + +VS   +      + 
Sbjct: 294 QALVSISANGFINFVNP 310

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 3e-09
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 21/86 (24%)

Query: 19  RPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR 78
           +  +  K H   V +                     C+   G  +VSG +D++  ++   
Sbjct: 7   KSPKVLKGHDDHVIT---------------------CLQFCGNRIVSGSDDNTLKVWSAV 45

Query: 79  GSRPLQTFKPHTADVRSIRFSPSAYY 104
             + L+T   HT  V S +   +   
Sbjct: 46  TGKCLRTLVGHTGGVWSSQMRDNIII 71

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 1e-08
 Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 30/153 (19%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGS----------- 49
           +VSG  D+S  ++D+     + T   H +    + L      +G    +           
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC 249

Query: 50  ----------PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK-----PHTADVR 94
                       +  C+  +   +++  +D +  L+D++    ++             V 
Sbjct: 250 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 309

Query: 95  SIRFSPSAYYLLTGGYDN----KLVLTDLQGTM 123
            IR S +      G  +     KL++ D    M
Sbjct: 310 RIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 342

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 9e-06
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 24/123 (19%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
           +VSG  D    ++D      L T + HT  V S+  D                      G
Sbjct: 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD----------------------G 187

Query: 61  RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
             +VSG  D+S  ++D+     + T   H +    +    +   L++G  D+ + + D++
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIK 245

Query: 121 GTM 123
              
Sbjct: 246 TGQ 248

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (76), Expect = 0.002
 Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 81  RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
           +  +  K H   V +         +++G  DN L +    
Sbjct: 7   KSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAV 45

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (75), Expect = 0.004
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 20/138 (14%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH------------------YTTE 42
           +VSG +D++  ++     + L+T   HT  V S  +                        
Sbjct: 30  IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGEC 89

Query: 43  AGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSA 102
             T  G   +  C+    + +VSG  D++  ++DI   + L     H A VR +++    
Sbjct: 90  IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR- 148

Query: 103 YYLLTGGYDNKLVLTDLQ 120
             +++G YD  + + D +
Sbjct: 149 -RVVSGAYDFMVKVWDPE 165

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 9e-09
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 55  CVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
           C+      +++G +D    +YD    + L     H   V +++++     L++G  D 
Sbjct: 18  CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDR 74

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 4e-07
 Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 34  IHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQ-TFKPHTAD 92
              + Y+ +      +  +      S  ++VSG  ++   +Y++R  + +          
Sbjct: 268 WDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQ 326

Query: 93  VRSIRFSPSAYYLLTGGYDNKLVLTDL 119
           + S+ F      +     D +  L  L
Sbjct: 327 IWSVNFKGK-TLVAAVEKDGQSFLEIL 352

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 7e-08
 Identities = 10/68 (14%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 52  SALCVDPSGRLMVSGHEDSSCVLYDIR-GSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
            A   +    L+ +G  D++  +Y ++   + ++    H   V ++ +   +  L++ G 
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGA 277

Query: 111 DNKLVLTD 118
           D  +   +
Sbjct: 278 DACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 1e-04
 Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 81  RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT 122
             L+T   H   + ++  +P    L++G YD +++       
Sbjct: 4   EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM 41

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.3 bits (79), Expect = 0.001
 Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 22/78 (28%)

Query: 1   MVSGHEDSSCVLYDIR-GSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS 59
           + +G  D++  +Y ++   + ++    H                       V+ L  +  
Sbjct: 230 VATGSLDTNIFIYSVKRPMKIIKALNAHK--------------------DGVNNLLWETP 269

Query: 60  GRLMVSGHEDSSCVLYDI 77
             L VS   D+    +++
Sbjct: 270 STL-VSSGADACIKRWNV 286

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 3e-07
 Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 3/62 (4%)

Query: 51  VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKP---HTADVRSIRFSPSAYYLLT 107
           +S + + PS  L++    D S  +Y                +   +    F  +    + 
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 108 GG 109
            G
Sbjct: 74  VG 75

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 4e-05
 Identities = 8/41 (19%), Positives = 15/41 (36%)

Query: 81  RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG 121
           + +Q  +     +  I+  PS   LL   +D  L +     
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI 42

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 6e-07
 Identities = 21/145 (14%), Positives = 51/145 (35%), Gaps = 29/145 (20%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG---------------- 44
           +VS   D +  +++      ++T   H   +  +        +G                
Sbjct: 151 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC 210

Query: 45  --TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR---------GSRPLQTFKPHTADV 93
               +G      C+    + +VSG  D    ++D+          G+  L+T   H+  V
Sbjct: 211 LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 270

Query: 94  RSIRFSPSAYYLLTGGYDNKLVLTD 118
             ++F      +++  +D+ +++ D
Sbjct: 271 FRLQFDEF--QIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 1e-06
 Identities = 10/56 (17%), Positives = 22/56 (39%)

Query: 45  TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP 100
            R  +     C+    + +VSG  D++  ++D       +    HT  V  +++  
Sbjct: 10  CRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (76), Expect = 0.003
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 1  MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYT 40
          +VSG  D++  ++D       +    HT  V  +  D   
Sbjct: 28 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 6e-07
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 45  TRQG--SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTF-KPHTADVRSIRFSPS 101
            R G    ++AL     G+ + S   +     +DI      + F   H   +  I+ +  
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66

Query: 102 AYYLLTGGYDN 112
                    D+
Sbjct: 67  GDLFTVSWDDH 77

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 2e-05
 Identities = 8/67 (11%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 55  CVDPSGRLMVSGHEDSSCVLYDIR--GSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
              P    + +G  D+S +++++      P+     H     +     +   +++ G D+
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS 290

Query: 113 KLVLTDL 119
            +   ++
Sbjct: 291 NIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 3e-05
 Identities = 5/38 (13%), Positives = 12/38 (31%)

Query: 83  LQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
            Q    H   + ++  S     L +   +  +   D+ 
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 42

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.9 bits (99), Expect = 2e-06
 Identities = 14/127 (11%), Positives = 30/127 (23%), Gaps = 11/127 (8%)

Query: 2   VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSP-------VSAL 54
           +     S      +  S   +  +    D+              R   P        S  
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282

Query: 55  CVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKL 114
                        E    + YD++     +       ++  +R S     ++    D K+
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKI 338

Query: 115 VLTDLQG 121
               L+ 
Sbjct: 339 YTFPLEK 345

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 2e-06
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 14/116 (12%)

Query: 1   MVSGHEDSSCVL---YDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVD 57
           +   H+ +S      Y+      + +    T   ++   +   +       S V +L  +
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS-------SWVMSLSFN 298

Query: 58  PSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVR----SIRFSPSAYYLLTGG 109
            SG  + S   D     +D++    + T   H  D+      +        L   G
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 1e-05
 Identities = 7/68 (10%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 55  CVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK--PHTADVRSIRFSPSA-YYLLTGGYD 111
                 +   +   D++  ++D+  S+ +Q +         + +    +    +++   D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 112 NKLVLTDL 119
             L   +L
Sbjct: 318 GTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 5e-04
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 49  SPVSALCVDPSGRLMVSGHEDSSCV-LYDIRGSR--PLQTFKPH-TADVRSIRFSP--SA 102
           +  + L  DP+   +      S+ V   D   S+  P+  F  H ++ V +++FSP   +
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 103 YYLLTGGYDNKL 114
            YL +G    K+
Sbjct: 78  QYLCSGDESGKV 89

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.1 bits (76), Expect = 0.002
 Identities = 9/77 (11%), Positives = 28/77 (36%), Gaps = 17/77 (22%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
             +   D++  ++D+  S+ +Q +      + +  +                 +    +G
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV----------------GVVATGNG 309

Query: 61  RLMVSGHEDSSCVLYDI 77
           R+ +S   D +   Y++
Sbjct: 310 RI-ISLSLDGTLNFYEL 325

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.7 bits (81), Expect = 7e-04
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 56  VDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLV 115
           +D      V+  +     L D    + ++      A V   R S S  YLL  G D ++ 
Sbjct: 28  LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARID 86

Query: 116 LTD 118
           + D
Sbjct: 87  MID 89

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 35.1 bits (79), Expect = 0.001
 Identities = 7/89 (7%), Positives = 21/89 (23%)

Query: 5   HEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMV 64
            + +      +R  +           +    L                 +  D  G  + 
Sbjct: 248 ADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLY 307

Query: 65  SGHEDSSCVLYDIRGSRPLQTFKPHTADV 93
            G   +   +++      ++  K    D+
Sbjct: 308 LGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 33.6 bits (75), Expect = 0.003
 Identities = 9/76 (11%), Positives = 19/76 (25%), Gaps = 2/76 (2%)

Query: 45  TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYY 104
                        P     +     +    YD++  + ++           + F      
Sbjct: 248 ADLTELYFTGLRSPKDPNQIY-GVLNRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDK 305

Query: 105 LLTGGYDNKLVLTDLQ 120
           L  GG  N L + +  
Sbjct: 306 LYLGGTFNDLAVFNPD 321

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 34.0 bits (76), Expect = 0.003
 Identities = 12/103 (11%), Positives = 28/103 (27%), Gaps = 3/103 (2%)

Query: 1   MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
            V+ H     +   +         K  +  V  +        A    G  + ++ V    
Sbjct: 253 QVAYHRALDRIYLLVDQRDEW-RHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDE 311

Query: 61  R--LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPS 101
           +  L      D +  ++D      L++        + I  +  
Sbjct: 312 KPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 5/90 (5%)

Query: 31  VRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRP-----LQT 85
           +  I    Y  +     G  V    +  SGR +     D    + D+    P     ++ 
Sbjct: 44  IALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI 103

Query: 86  FKPHTADVRSIRFSPSAYYLLTGGYDNKLV 115
                +   S        Y + G Y     
Sbjct: 104 GSEARSIETSKMEGWEDKYAIAGAYWPPQY 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.91
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.91
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.9
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.89
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.89
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.87
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.87
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.86
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.85
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.85
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.84
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.84
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.84
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.84
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.83
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.83
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.82
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.79
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.77
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.77
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.74
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.74
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.69
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.69
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.69
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.66
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.58
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.57
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.53
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.51
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.49
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.47
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.4
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.37
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.34
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.26
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.24
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.12
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.1
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.01
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.94
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.92
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.91
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.57
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.48
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.05
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.0
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.96
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.91
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.89
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.89
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.78
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.62
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.55
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.51
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.45
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.45
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.24
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.14
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.09
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.06
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	96.95
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.75
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.52
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.4
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.36
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.27
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.12
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.1
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.06
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.01
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.96
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	95.87
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.66
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.17
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.91
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.16
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.92
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	91.13
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	90.95
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	89.71
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	85.89
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	85.47
d1q47a_	495	Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]	82.76
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	81.47
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	81.36
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	80.63

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=4.4e-25  Score=136.57  Aligned_cols=118  Identities=24%  Similarity=0.366  Sum_probs=105.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc------------------------cCCCCCeEEEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG------------------------TRQGSPVSALCV   56 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------------------~~~~~~i~~~~~   56 (125)
                      +++|+.|+.|++||+++++++..+.+|..+|+++.|++......                        ..+...+.+++|
T Consensus       199 ~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~  278 (340)
T d1tbga_         199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF  278 (340)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             eEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEE
Confidence            36899999999999999999999999999999999975321111                        134467999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         57 DPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        57 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      +|+++++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++.+|++|+.|+.|++||
T Consensus       279 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.1e-24  Score=138.56  Aligned_cols=109  Identities=21%  Similarity=0.414  Sum_probs=91.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCc---EEEEEc
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSS---CVLYDI   77 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---i~~~d~   77 (125)
                      |++|+.|++|++||+.+++++..+....              ....|...|.+++|+|++++|++|+.|++   |++||+
T Consensus       198 lasgs~Dg~i~iwd~~~~~~~~~~~~~~--------------~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~  263 (393)
T d1sq9a_         198 IATGFNNGTVQISELSTLRPLYNFESQH--------------SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET  263 (393)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCC-----------------CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred             EEEEeCCCcEEEEeeccccccccccccc--------------ccccccceEEEcccccccceeeeecCCCCcceeeeccc
Confidence            4789999999999999988776654321              01224488999999999999999998875   899999


Q ss_pred             CCCceeEEeC-------------CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         78 RGSRPLQTFK-------------PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        78 ~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .+++.+..+.             +|.+.|++++|+|++++|++++.|++|++||++++.
T Consensus       264 ~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         264 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            9887777664             689999999999999999999999999999998763

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3.3e-24  Score=130.97  Aligned_cols=98  Identities=23%  Similarity=0.425  Sum_probs=92.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      +++++.|+.|++||+.+++++..+.+|.                    ..|.+++++|++++|++++.||.|++||+.++
T Consensus       220 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~--------------------~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         220 LLSGSRDKTIKMWDVSTGMCLMTLVGHD--------------------NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCS--------------------SCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             eEeccCCCEEEEEECCCCcEEEEEeCCC--------------------CCEEEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence            3678999999999999999998888887                    78899999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      +.+..+.+|.+.|++++|+|++++|++|+.|++|++||
T Consensus       280 ~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         280 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=6.8e-23  Score=127.09  Aligned_cols=123  Identities=21%  Similarity=0.323  Sum_probs=105.1

Q ss_pred             CeeecCCCeEEEEECCCCcce--eeecCCCCCeEEEEecCccc------------------------ccccCCCCCeEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPL--QTFKPHTADVRSIHLDHYTT------------------------EAGTRQGSPVSAL   54 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~------------------------~~~~~~~~~i~~~   54 (125)
                      |++|+.|++|++||+..++..  ..+..|..+|.++.|++...                        .....|...|.++
T Consensus        73 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v  152 (311)
T d1nr0a1          73 CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSV  152 (311)
T ss_dssp             EEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEE
T ss_pred             EeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            589999999999999887654  45677899999999875321                        1112456789999


Q ss_pred             EECCCCCE-EEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         55 CVDPSGRL-MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        55 ~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +|+|++++ +++|+.|+.|++||+++++....+..|...|.++.|+|+++++++++.|+.+++||++++.
T Consensus       153 ~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~  222 (311)
T d1nr0a1         153 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT  222 (311)
T ss_dssp             EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             cccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccc
Confidence            99999874 8889999999999999999999999999999999999999999999999999999987653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-22  Score=126.89  Aligned_cols=117  Identities=21%  Similarity=0.208  Sum_probs=101.2

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc---------------------ccccCCCCCeEEEEECCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT---------------------EAGTRQGSPVSALCVDPS   59 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~~~i~~~~~~~~   59 (125)
                      +++++.|+.|++||+++++.+..+. +..+|.++.|++...                     .....|...|.+++|+|+
T Consensus       198 ~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~  276 (337)
T d1gxra_         198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC  276 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTT
T ss_pred             cccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCC
Confidence            4678999999999999998877765 778899988865321                     122356788999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      ++++++++.|+.|++||+.+++.+..+. |...|.+++|+|++++|++|+.|++|++||+
T Consensus       277 g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         277 GKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999999999999999999999888776 7889999999999999999999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=1.1e-22  Score=126.13  Aligned_cols=102  Identities=22%  Similarity=0.368  Sum_probs=92.3

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++|+.|+.|++||+++++....+..|.                    ..|++++++|+++++++++.|+.+++||..++
T Consensus       162 l~sgs~d~~i~i~d~~~~~~~~~~~~~~--------------------~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         162 IISGSDDNTVAIFEGPPFKFKSTFGEHT--------------------KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG  221 (311)
T ss_dssp             EEEEETTSCEEEEETTTBEEEEEECCCS--------------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             eccccccccccccccccccccccccccc--------------------ccccccccCccccccccccccccccccccccc
Confidence            4689999999999999998888888777                    78899999999999999999999999999988


Q ss_pred             ceeEEeC-------CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         81 RPLQTFK-------PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +....+.       +|.+.|.+++|+|++++|++|+.|++|++||++++
T Consensus       222 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         222 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            7766654       47889999999999999999999999999999876

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=9.5e-22  Score=119.90  Aligned_cols=122  Identities=23%  Similarity=0.313  Sum_probs=109.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccc----------------------ccCCCCCeEEEEECC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEA----------------------GTRQGSPVSALCVDP   58 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------------------~~~~~~~i~~~~~~~   58 (125)
                      |+||+.|++|++||+.+++.+..+.+|..+|.++.|.+.....                      ...+...+.++.++|
T Consensus        32 l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (317)
T d1vyhc1          32 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP  111 (317)
T ss_dssp             EEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECS
T ss_pred             EEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccC
Confidence            5899999999999999999999999999999999987533211                      124567899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +++.+++++.|+.+++||+++++.+..+..|...+.+++|+|++.++++++.|+.+++|++++.
T Consensus       112 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~  175 (317)
T d1vyhc1         112 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK  175 (317)
T ss_dssp             SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccc
Confidence            9999999999999999999999999999999999999999999999999999999999998765

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=1.9e-21  Score=120.08  Aligned_cols=122  Identities=27%  Similarity=0.371  Sum_probs=106.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc------------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG------------------------------------   44 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------------------------------   44 (125)
                      |+||+.|++|++||+.+++.+..+..|..+|.++.|.+......                                    
T Consensus        70 l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (340)
T d1tbga_          70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC  149 (340)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEE
T ss_pred             EEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccc
Confidence            58999999999999999999999999999999999864211000                                    


Q ss_pred             -------------------------------cCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCce
Q psy14458         45 -------------------------------TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADV   93 (125)
Q Consensus        45 -------------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v   93 (125)
                                                     ......+....+.+...++++++.|+.|++||+++++.+..+..|...|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i  229 (340)
T d1tbga_         150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI  229 (340)
T ss_dssp             EEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCE
T ss_pred             ccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCe
Confidence                                           0233567888899999999999999999999999999999999999999


Q ss_pred             eEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         94 RSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        94 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .+++|+|++.++++++.|+.+++|+++..
T Consensus       230 ~~v~~~p~~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         230 NAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence            99999999999999999999999999765

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.5e-22  Score=125.85  Aligned_cols=120  Identities=18%  Similarity=0.267  Sum_probs=101.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeee-------cCCCCCeEEEEecCccccc------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTF-------KPHTADVRSIHLDHYTTEA------------------------------   43 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~------------------------------   43 (125)
                      |++|+.|+.|++||..++.....+       .+|..+|.++.|.+.....                              
T Consensus       220 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  299 (388)
T d1erja_         220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT  299 (388)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C
T ss_pred             EEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccc
Confidence            478999999999999988765554       3467889999986532111                              


Q ss_pred             ----ccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEE------ccCCCeEEEeecCCe
Q psy14458         44 ----GTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRF------SPSAYYLLTGGYDNK  113 (125)
Q Consensus        44 ----~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~~~~d~~  113 (125)
                          ...+...+.+++|+|+++++++|+.||.|++||+.+++++..+.+|.+.|.++++      +|++.+|++|+.|++
T Consensus       300 ~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~  379 (388)
T d1erja_         300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK  379 (388)
T ss_dssp             EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             eeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCE
Confidence                1134578999999999999999999999999999999999999999999998875      678999999999999


Q ss_pred             EEEEeCC
Q psy14458        114 LVLTDLQ  120 (125)
Q Consensus       114 i~~~~~~  120 (125)
                      |++|+++
T Consensus       380 I~iW~~~  386 (388)
T d1erja_         380 ARIWKYK  386 (388)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeee
Confidence            9999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=7.4e-21  Score=119.99  Aligned_cols=123  Identities=15%  Similarity=0.171  Sum_probs=100.1

Q ss_pred             CeeecCCCeEEEEECCCCcc--eeeecCCCCCeEEEEecCccccc--------------------------ccCCCCCeE
Q psy14458          1 MVSGHEDSSCVLYDIRGSRP--LQTFKPHTADVRSIHLDHYTTEA--------------------------GTRQGSPVS   52 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~--------------------------~~~~~~~i~   52 (125)
                      |++|+.|++|++||+.++..  ...+..+..+|.++.|.+.....                          ...+...|.
T Consensus        66 l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~  145 (371)
T d1k8kc_          66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  145 (371)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             EEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccc
Confidence            57899999999999987654  34456788899999986532111                          124567899


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCC------------------ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeE
Q psy14458         53 ALCVDPSGRLMVSGHEDSSCVLYDIRGS------------------RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKL  114 (125)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i  114 (125)
                      +++|+|++.++++|+.|+.+++|+....                  +.+.....|...|.+++|+|+++++++++.|+.|
T Consensus       146 ~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i  225 (371)
T d1k8kc_         146 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV  225 (371)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred             cccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcc
Confidence            9999999999999999999999998642                  3455666788999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy14458        115 VLTDLQGTM  123 (125)
Q Consensus       115 ~~~~~~~~~  123 (125)
                      ++||++++.
T Consensus       226 ~iwd~~~~~  234 (371)
T d1k8kc_         226 CLADADKKM  234 (371)
T ss_dssp             EEEEGGGTT
T ss_pred             eEEeeeccc
Confidence            999987653

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=6.2e-21  Score=120.35  Aligned_cols=122  Identities=14%  Similarity=0.201  Sum_probs=100.7

Q ss_pred             CeeecCCCeEEEEECCCCc--ceeeecCCCCCeEEEEecCccccc------------------------ccCCCCCeEEE
Q psy14458          1 MVSGHEDSSCVLYDIRGSR--PLQTFKPHTADVRSIHLDHYTTEA------------------------GTRQGSPVSAL   54 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~------------------------~~~~~~~i~~~   54 (125)
                      |++|+.|+.|++||+.+++  ++..+.+|..+|+++.|++.....                        ...+...+.++
T Consensus        22 la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i  101 (371)
T d1k8kc_          22 IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV  101 (371)
T ss_dssp             EEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEE
T ss_pred             EEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccc
Confidence            5789999999999998775  566788999999999997532111                        12456789999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEcCCCce----eEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         55 CVDPSGRLMVSGHEDSSCVLYDIRGSRP----LQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        55 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +|+|+++.+++++.++.+++|++.....    ......|...|.+++|+|++++|++|+.|+++++|++...
T Consensus       102 ~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~  173 (371)
T d1k8kc_         102 RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  173 (371)
T ss_dssp             EECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             ccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccC
Confidence            9999999999999999999999876542    2334578899999999999999999999999999998653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.7e-20  Score=114.87  Aligned_cols=122  Identities=20%  Similarity=0.269  Sum_probs=104.8

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccc---------------------cccCCCCCeEEEEECCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTE---------------------AGTRQGSPVSALCVDPS   59 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------------------~~~~~~~~i~~~~~~~~   59 (125)
                      +++++.|+.|++|++.+++.......+..++.++.|++....                     ....+...|.+++|+|+
T Consensus       156 l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~  235 (337)
T d1gxra_         156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT  235 (337)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEccc
Confidence            478899999999999999988888889999999998643211                     11245678999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ++++++++.++.+++||++.++... ...|...|.+++|+|++++|++++.|+.|++||+.++.
T Consensus       236 ~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~  298 (337)
T d1gxra_         236 GEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             SSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             ccccceecccccccccccccccccc-ccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC
Confidence            9999999999999999999887654 45699999999999999999999999999999998764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.2e-20  Score=114.21  Aligned_cols=120  Identities=19%  Similarity=0.326  Sum_probs=97.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc-----------------------cCCCCCeEEEEEC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG-----------------------TRQGSPVSALCVD   57 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----------------------~~~~~~i~~~~~~   57 (125)
                      |++|+.|+.|++||++.++.+..+..|...+.++.+++......                       ..+...+.++.++
T Consensus       190 l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (342)
T d2ovrb2         190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN  269 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC
T ss_pred             EEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC
Confidence            57899999999999999999999999999999988765332221                       1234456666664


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCceeEEeC-----CCCCceeEEEEccCCCeEEEeecCCe----EEEEeCCCC
Q psy14458         58 PSGRLMVSGHEDSSCVLYDIRGSRPLQTFK-----PHTADVRSIRFSPSAYYLLTGGYDNK----LVLTDLQGT  122 (125)
Q Consensus        58 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~d~~----i~~~~~~~~  122 (125)
                        ++++++|+.||.|++||+++++.+..+.     +|...|++++|+|++.++++|+.||+    |.+||++..
T Consensus       270 --~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         270 --KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             --SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             --CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence              5789999999999999999998887764     46678999999999999999998885    999998753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.85  E-value=5.5e-20  Score=112.43  Aligned_cols=122  Identities=16%  Similarity=0.243  Sum_probs=98.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeec-CCCCCeEEEEecCcccccc-----------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIHLDHYTTEAG-----------------------------------   44 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~-----------------------------------   44 (125)
                      |+||+.|++|++||+.+++++..+. .|..+|+++.|.+......                                   
T Consensus        27 l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (299)
T d1nr0a2          27 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA  106 (299)
T ss_dssp             EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCccccccccccccccccccccc
Confidence            5899999999999999998887764 5788999998854211000                                   


Q ss_pred             --------------------------cCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeE-EeCCCCCceeEEE
Q psy14458         45 --------------------------TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQ-TFKPHTADVRSIR   97 (125)
Q Consensus        45 --------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~v~~~~   97 (125)
                                                ......+.+++++|+++++++++.++.|++||+.+++... ....|...|.+++
T Consensus       107 ~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~  186 (299)
T d1nr0a2         107 VSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA  186 (299)
T ss_dssp             ECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                      0122467889999999999999999999999998876543 2346889999999


Q ss_pred             EccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         98 FSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        98 ~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      |+|+++++++++.|+.+++||+.++
T Consensus       187 ~~~~~~~l~~~~~d~~i~~~~~~~~  211 (299)
T d1nr0a2         187 FSNNGAFLVATDQSRKVIPYSVANN  211 (299)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred             ccccccccccccccccccccccccc
Confidence            9999999999999999999998754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.6e-19  Score=112.16  Aligned_cols=120  Identities=18%  Similarity=0.222  Sum_probs=100.7

Q ss_pred             ecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccc--------------------------ccCCCCCeEEEEEC
Q psy14458          4 GHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEA--------------------------GTRQGSPVSALCVD   57 (125)
Q Consensus         4 ~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------------------------~~~~~~~i~~~~~~   57 (125)
                      ++.++.+++|+..+++.+..+.+|..+|.++.|.+.....                          ...+...|.+++|+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~  214 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS  214 (325)
T ss_dssp             CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred             ccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeec
Confidence            3567889999999999999999999999999986532110                          11455779999999


Q ss_pred             CC-CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEc---cCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         58 PS-GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS---PSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        58 ~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      |+ +.++++++.|+.|++||.++++.+..+..|...+..+.|+   |++++|++++.|+.|++||++++.
T Consensus       215 pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~  284 (325)
T d1pgua1         215 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK  284 (325)
T ss_dssp             STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCC
Confidence            96 6889999999999999999999999999888887766665   689999999999999999998753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=5.5e-20  Score=111.95  Aligned_cols=108  Identities=15%  Similarity=0.287  Sum_probs=83.4

Q ss_pred             CeeecCCCeEEEEECCCCccee-eecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQ-TFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |++|+.|+.|++||+.+++... .+..|..+|.++.|++.          ........+++.++++|+.|+.|++||+.+
T Consensus       177 l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~----------~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~  246 (287)
T d1pgua2         177 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPA----------EKGANEEEIEEDLVATGSLDTNIFIYSVKR  246 (287)
T ss_dssp             EEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCC----------C------CCSCCEEEEEETTSCEEEEESSC
T ss_pred             cccccccccccceeecccccccccccccccccceeeeccc----------ccccccccCCCCeeEeecCCCeEEEEECCC
Confidence            5789999999999999887654 35667766666666542          222333445678999999999999999977


Q ss_pred             -CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         80 -SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        80 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                       .+.+..+.+|.+.|+++.|+|++ .+++++.|++|++|++
T Consensus       247 ~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         247 PMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence             45666677899999999999986 5888999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.84  E-value=4e-20  Score=113.05  Aligned_cols=103  Identities=20%  Similarity=0.412  Sum_probs=83.9

Q ss_pred             CeeecCCCeEEEEECCCCcceee-ecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQT-FKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      |++|+.|+.|++||+++++.... ...|.                    ..|++++|+|++.++++++.++.|++||+.+
T Consensus       151 l~~g~~dg~i~~~d~~~~~~~~~~~~~~~--------------------~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         151 VAVGGQDSKVHVYKLSGASVSEVKTIVHP--------------------AEITSVAFSNNGAFLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             EEEEETTSEEEEEEEETTEEEEEEEEECS--------------------SCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             ccccccccccccccccccccccccccccc--------------------ccccccccccccccccccccccccccccccc
Confidence            36778888888888776554322 22333                    7889999999999999999999999999987


Q ss_pred             Ccee---EEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         80 SRPL---QTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        80 ~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +...   ..+..|...|.+++|+|++.++++|+.|+.|++||++++.
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             cccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCC
Confidence            6544   3455788999999999999999999999999999998754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=2.1e-19  Score=111.03  Aligned_cols=73  Identities=19%  Similarity=0.253  Sum_probs=66.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..+.++.++|.+.++++++.|+.|++||..+++.+..+..|...|.++.++  ++++++++.|+.|++||+++..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~  274 (355)
T d1nexb2         202 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS  274 (355)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC
T ss_pred             cccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccc
Confidence            456788899999999999999999999999999999999999999999985  4699999999999999998764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2.6e-19  Score=111.24  Aligned_cols=123  Identities=18%  Similarity=0.240  Sum_probs=96.3

Q ss_pred             CeeecCCCeEEEEECCCCccee--------eecCCCCCeEEEEecCccc------------------------ccccCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQ--------TFKPHTADVRSIHLDHYTT------------------------EAGTRQG   48 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~--------~~~~~~~~i~~~~~~~~~~------------------------~~~~~~~   48 (125)
                      |++|+.|++|++||+..++...        .+..+..+|.++.|+....                        .....|.
T Consensus        80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  159 (325)
T d1pgua1          80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS  159 (325)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred             EEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc
Confidence            4789999999999997654332        2345778899998864321                        1112467


Q ss_pred             CCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCceeEEeC---CCCCceeEEEEccC-CCeEEEeecCCeEEEEeCCCCC
Q psy14458         49 SPVSALCVDPSGRL-MVSGHEDSSCVLYDIRGSRPLQTFK---PHTADVRSIRFSPS-AYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        49 ~~i~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..+.+++|+|++.+ +++++.|+.+++||....+....+.   .|...|.+++|+|+ +.++++++.|+.|++||++++.
T Consensus       160 ~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~  239 (325)
T d1pgua1         160 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE  239 (325)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred             cccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc
Confidence            88999999999865 6789999999999998876655543   56778999999996 6899999999999999998764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.6e-19  Score=108.56  Aligned_cols=121  Identities=21%  Similarity=0.328  Sum_probs=97.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccccc-----------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGT-----------------------------------   45 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------------------------   45 (125)
                      |+||+.|++|++||+.+++++..+.+|..+|.++.|.+.......                                   
T Consensus        30 l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (342)
T d2ovrb2          30 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR  109 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTE
T ss_pred             EEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccccccccceecccccceeEeeeeccccc
Confidence            589999999999999999999999999999999987541110000                                   


Q ss_pred             ---------------------------------------------------------------CCCCCeEEEEECCCCCE
Q psy14458         46 ---------------------------------------------------------------RQGSPVSALCVDPSGRL   62 (125)
Q Consensus        46 ---------------------------------------------------------------~~~~~i~~~~~~~~~~~   62 (125)
                                                                                     ..........+++++.+
T Consensus       110 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (342)
T d2ovrb2         110 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH  189 (342)
T ss_dssp             EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSE
T ss_pred             ccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCE
Confidence                                                                           00112334455567889


Q ss_pred             EEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         63 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        63 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +++++.||.|++||++.++.+..+..|...+.++.++  ++++++++.|+.|++||+....
T Consensus       190 l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~  248 (342)
T d2ovrb2         190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQ  248 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC
T ss_pred             EEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEeccccc
Confidence            9999999999999999999999999999999888775  4699999999999999987653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=5.1e-19  Score=111.24  Aligned_cols=119  Identities=18%  Similarity=0.392  Sum_probs=93.5

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      |++|+ |+.|++||+.+++.+..+..+.........  ........+...|.+++|+|++++|++|+.||.|++||...+
T Consensus        77 lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~  153 (388)
T d1erja_          77 LATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN--LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR  153 (388)
T ss_dssp             EEEEC-BSCEEEEETTTCCEEEEECC-------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEEEe-CCeEEEEEecccceEeeecccccccccccc--cccccccCCCCCEEEEEECCCCCcceeccccccccccccccc
Confidence            46765 899999999999988887755432221111  111222345578999999999999999999999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +.+..+.+|...|.++.+++++..+++++.++.+++||+++.
T Consensus       154 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  195 (388)
T d1erja_         154 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  195 (388)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ccccccccccccccccccccccccccccccceeeeeeecccc
Confidence            999999999999999999999999999999999999998865

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.7e-18  Score=101.74  Aligned_cols=119  Identities=18%  Similarity=0.313  Sum_probs=88.4

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc------------------------------------
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG------------------------------------   44 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------------------------------   44 (125)
                      |+||+.|++|++||+.+++++..+.+|..+|.++.|++..+...                                    
T Consensus        28 l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (293)
T d1p22a2          28 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM  107 (293)
T ss_dssp             EEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccccccccccccccccccccccccc
Confidence            58999999999999999999999999999999999865221111                                    


Q ss_pred             ---------------------------cCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEE
Q psy14458         45 ---------------------------TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIR   97 (125)
Q Consensus        45 ---------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~   97 (125)
                                                 ..+...+.++.+  ....+++++.|+.+++||.++++.+..+..+...+..+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  185 (293)
T d1p22a2         108 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ  185 (293)
T ss_dssp             EEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             eeecccccceeEeecccccccccccccccccccccccee--cccccccccCCCceeeecCCCCcEEEEEccccccccccc
Confidence                                       012233444433  345667777888888888888888887877777777766


Q ss_pred             EccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         98 FSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        98 ~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +  ++..+++++.|+.|++||+++..
T Consensus       186 ~--~~~~l~~~~~dg~i~i~d~~~~~  209 (293)
T d1p22a2         186 Y--RDRLVVSGSSDNTIRLWDIECGA  209 (293)
T ss_dssp             E--ETTEEEEEETTSCEEEEETTTCC
T ss_pred             C--CCCeEEEecCCCEEEEEecccce
Confidence            6  45578888888888888887653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.2e-17  Score=101.47  Aligned_cols=77  Identities=18%  Similarity=0.376  Sum_probs=67.1

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEE-eCCCCCceeEEEEccC----------CCeEEEeecCCeEE
Q psy14458         47 QGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQT-FKPHTADVRSIRFSPS----------AYYLLTGGYDNKLV  115 (125)
Q Consensus        47 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~~~----------~~~~~~~~~d~~i~  115 (125)
                      +...+++++|+|++.+|++|+.+|.|++||..+++.... +..|...|.+++|+|+          +.++++|+.|++|+
T Consensus       161 ~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~  240 (287)
T d1pgua2         161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF  240 (287)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred             cCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEE
Confidence            446799999999999999999999999999998876553 5689999999999874          46899999999999


Q ss_pred             EEeCCCCC
Q psy14458        116 LTDLQGTM  123 (125)
Q Consensus       116 ~~~~~~~~  123 (125)
                      +||+++..
T Consensus       241 iw~~~~~~  248 (287)
T d1pgua2         241 IYSVKRPM  248 (287)
T ss_dssp             EEESSCTT
T ss_pred             EEECCCCC
Confidence            99997643

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=5.4e-18  Score=107.50  Aligned_cols=119  Identities=14%  Similarity=0.266  Sum_probs=85.3

Q ss_pred             CeeecCCCeEEEEECCCCcc-eeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRP-LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~   79 (125)
                      +++++.|+.+++|++..... ...+..+......+...   ......+...+.+++|+|++ ++++|+.|+.|++||+.+
T Consensus       139 ~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~  214 (393)
T d1sq9a_         139 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT---VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST  214 (393)
T ss_dssp             EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE---ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred             EEEEcCCCcEEEEEeecCCcccceeeeeeccceecccc---eecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc
Confidence            36788999999999864322 11222222222222111   11112234668899999987 889999999999999999


Q ss_pred             CceeEEeC------CCCCceeEEEEccCCCeEEEeecCCe---EEEEeCCCCC
Q psy14458         80 SRPLQTFK------PHTADVRSIRFSPSAYYLLTGGYDNK---LVLTDLQGTM  123 (125)
Q Consensus        80 ~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~d~~---i~~~~~~~~~  123 (125)
                      ++++..+.      .|...|++++|+|++++|++|+.|++   |++||++++.
T Consensus       215 ~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~  267 (393)
T d1sq9a_         215 LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE  267 (393)
T ss_dssp             TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred             cccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccce
Confidence            87765443      58899999999999999999999874   9999998753

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=4.6e-18  Score=104.90  Aligned_cols=117  Identities=19%  Similarity=0.276  Sum_probs=89.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccccccc------------------CCCCCeEE-EEECCCCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGT------------------RQGSPVSA-LCVDPSGR   61 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------~~~~~i~~-~~~~~~~~   61 (125)
                      +++++.|+.|++||+.++..+..+.+|..+|.++.+++..+....                  .+...+.+ .++++++.
T Consensus       216 ~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (355)
T d1nexb2         216 CISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN  295 (355)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSS
T ss_pred             eecccccceEEeeeccccccccccccccccccccccccceeeeeecccccccccccccceecccccCCceEEEEEcCCCC
Confidence            467899999999999999999999999999999998764332221                  12233333 34566777


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeE-EeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         62 LMVSGHEDSSCVLYDIRGSRPLQ-TFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        62 ~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      ++++| .|+.|++||+++++.+. .+..|...|.+++|+|+ .++++++.||++++|-+
T Consensus       296 ~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         296 ILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             EEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            66666 58999999999998875 45679999999999987 57888899998766643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.2e-17  Score=97.44  Aligned_cols=113  Identities=18%  Similarity=0.350  Sum_probs=88.7

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccc--------------------cCCCCCeEEEEECCCCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG--------------------TRQGSPVSALCVDPSGR   61 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------------------~~~~~~i~~~~~~~~~~   61 (125)
                      ++++.|+.|++||+++++.+..+.++...+..+.+++......                    ..+...+.  .+++++.
T Consensus       152 ~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~  229 (293)
T d1p22a2         152 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNK  229 (293)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--EEECCSS
T ss_pred             ccccCCCceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeee--eccccce
Confidence            5678899999999999988888888888888877765332211                    12333444  4566788


Q ss_pred             EEEEEeCCCcEEEEEcCC---------CceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEe
Q psy14458         62 LMVSGHEDSSCVLYDIRG---------SRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD  118 (125)
Q Consensus        62 ~~~~~~~~~~i~~~d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~  118 (125)
                      ++++++.||.|++||+..         ...+..+.+|.+.|.+++|  ++.+|++++.|++|++||
T Consensus       230 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            999999999999999753         2457778899999999999  567899999999999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.72  E-value=2.7e-17  Score=105.37  Aligned_cols=100  Identities=15%  Similarity=0.159  Sum_probs=82.3

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      ++.+.|++|++||+.+++.+..+..+.                     .+..++|+|+|+++++++.|+.+++||+.+++
T Consensus        36 V~~~~dg~v~vwD~~t~~~~~~l~~g~---------------------~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~   94 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIVKVIDTGY---------------------AVHISRMSASGRYLLVIGRDARIDMIDLWAKE   94 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEEEEEECCS---------------------SEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCC---------------------CeeEEEECCCCCEEEEEeCCCCEEEEEccCCc
Confidence            678899999999999999999988653                     57899999999999999999999999998876


Q ss_pred             eeE--EeC---CCCCceeEEEEccCCCeEEEe-ecCCeEEEEeCCCC
Q psy14458         82 PLQ--TFK---PHTADVRSIRFSPSAYYLLTG-GYDNKLVLTDLQGT  122 (125)
Q Consensus        82 ~~~--~~~---~~~~~v~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~  122 (125)
                      ...  .+.   .|.+.+.++.|+|||++++++ ..++.+.+||..+.
T Consensus        95 ~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~  141 (426)
T d1hzua2          95 PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  141 (426)
T ss_dssp             CEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             eeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc
Confidence            433  232   345556677888999987554 57999999998765

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=9.4e-17  Score=103.29  Aligned_cols=101  Identities=15%  Similarity=0.068  Sum_probs=82.8

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR   81 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (125)
                      ++.+.|++|.+||..+++.+..+..+                     ..+..++|+|+|+++++++.|+.+++||+.+++
T Consensus        36 v~~~d~g~v~v~D~~t~~v~~~~~~g---------------------~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~   94 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTYEIKTVLDTG---------------------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE   94 (432)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEECS---------------------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCC---------------------CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC
Confidence            68889999999999999999998754                     357899999999999999999999999998865


Q ss_pred             e--eEEeC---CCCCceeEEEEccCCCeE-EEeecCCeEEEEeCCCCC
Q psy14458         82 P--LQTFK---PHTADVRSIRFSPSAYYL-LTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        82 ~--~~~~~---~~~~~v~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~  123 (125)
                      .  ...+.   .|.+.+.+..|+|||+++ +++..++++.+||..++.
T Consensus        95 ~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~  142 (432)
T d1qksa2          95 PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  142 (432)
T ss_dssp             CCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             ceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc
Confidence            3  33333   344556666788899976 677789999999988753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=8.3e-17  Score=98.51  Aligned_cols=78  Identities=15%  Similarity=0.146  Sum_probs=65.5

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee---EEeCCCCCceeEEEEccC-CCeEEEeecCCeEEEEeCCC
Q psy14458         46 RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPL---QTFKPHTADVRSIRFSPS-AYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        46 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~i~~~~~~~  121 (125)
                      +|.+.|++++|+|++++|++|+.||+|++||+.++...   .....|.++|.+++|+|+ +.++++|+.|+.+++|++..
T Consensus         9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~   88 (342)
T d1yfqa_           9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc
Confidence            34489999999999999999999999999999765432   222359999999999986 56899999999999999876


Q ss_pred             CC
Q psy14458        122 TM  123 (125)
Q Consensus       122 ~~  123 (125)
                      ..
T Consensus        89 ~~   90 (342)
T d1yfqa_          89 SP   90 (342)
T ss_dssp             SS
T ss_pred             cc
Confidence            53

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=7e-16  Score=94.32  Aligned_cols=73  Identities=11%  Similarity=0.240  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         46 RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        46 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      .+...+++++|+|++.+|++|+.||.|++||+.+++.+..+..+ ..+..++|+|+++++++++.|+.+++|..
T Consensus       249 ~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             cccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            34567899999999999999999999999999999998888643 34456778889999999999988777654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.66  E-value=2.1e-15  Score=93.40  Aligned_cols=96  Identities=11%  Similarity=0.186  Sum_probs=79.3

Q ss_pred             cCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCC--cEEEEEcCCCce
Q psy14458          5 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDS--SCVLYDIRGSRP   82 (125)
Q Consensus         5 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~   82 (125)
                      ..++.|++||+..++..+.  .|.                    ..+.+++|+|+++.+++++.+.  .|++||..+++.
T Consensus        21 ~~~g~v~v~d~~~~~~~~~--~~~--------------------~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~   78 (360)
T d1k32a3          21 VSRGQAFIQDVSGTYVLKV--PEP--------------------LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA   78 (360)
T ss_dssp             EETTEEEEECTTSSBEEEC--SCC--------------------SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             EECCeEEEEECCCCcEEEc--cCC--------------------CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE
Confidence            3467999999987765543  355                    7889999999999887766543  699999987765


Q ss_pred             eEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         83 LQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        83 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      . .+..|...|.+++|+|+++++++++.++.+.+|++.++.
T Consensus        79 ~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          79 E-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             E-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             E-EeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence            5 466799999999999999999999999999999998764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=3.9e-14  Score=86.86  Aligned_cols=104  Identities=16%  Similarity=0.164  Sum_probs=83.0

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLM-VSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~i~~~d~~~   79 (125)
                      |++++.|++|++||+.+++.+..+..+.                  +...+..++++|+++++ ++++.++.|.+||+.+
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~------------------~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t   65 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVITIAD------------------AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT   65 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTT------------------CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEcCCCEEEEEECCCCeEEEEEECCC------------------CCCCccEEEECCCCCEEEEEECCCCeEEEEECCC
Confidence            5789999999999999999888876433                  11456789999999887 5677899999999999


Q ss_pred             CceeEEeCCCCC-----ceeEEEEccCCCeEEEeec------------CCeEEEEeCCCC
Q psy14458         80 SRPLQTFKPHTA-----DVRSIRFSPSAYYLLTGGY------------DNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~------------d~~i~~~~~~~~  122 (125)
                      ++.+..+..+..     .+..+.|+|+++.++.+..            +..+.+||..++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  125 (337)
T d1pbyb_          66 GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL  125 (337)
T ss_dssp             CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT
T ss_pred             CcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC
Confidence            998887765432     3457899999999887763            567888887764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.57  E-value=3.7e-14  Score=87.74  Aligned_cols=94  Identities=18%  Similarity=0.297  Sum_probs=79.5

Q ss_pred             CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC
Q psy14458          8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK   87 (125)
Q Consensus         8 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~   87 (125)
                      ..|++||+.+++.. .+..+.                    ..+.+++|+|+++++++++.++.+++|+..+++....+.
T Consensus        66 ~~v~v~d~~~~~~~-~~~~~~--------------------~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  124 (360)
T d1k32a3          66 DFLGIYDYRTGKAE-KFEENL--------------------GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER  124 (360)
T ss_dssp             EEEEEEETTTCCEE-ECCCCC--------------------CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEECCCCcEE-EeeCCC--------------------ceEEeeeecccccccceeccccccccccccccceeeeee
Confidence            37899998876654 344455                    788999999999999999999999999999999888888


Q ss_pred             CCCCceeEEEEccCCCeEEEe----------ecCCeEEEEeCCCC
Q psy14458         88 PHTADVRSIRFSPSAYYLLTG----------GYDNKLVLTDLQGT  122 (125)
Q Consensus        88 ~~~~~v~~~~~~~~~~~~~~~----------~~d~~i~~~~~~~~  122 (125)
                      .|...+.+++|+|+|++|+.+          ..++.+++|++.++
T Consensus       125 ~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~  169 (360)
T d1k32a3         125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  169 (360)
T ss_dssp             CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             cccccccchhhccceeeeeeeccccccceeeccccceeeeccccC
Confidence            898999999999999999854          34566999999875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.53  E-value=3.9e-13  Score=81.28  Aligned_cols=100  Identities=13%  Similarity=0.209  Sum_probs=82.3

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLM-VSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~i~~~d~~~~   80 (125)
                      ++++.|++|.+||+.+++.+..+...                     .....++++|+++++ +++..++.|++||+.++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g---------------------~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~   64 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG---------------------SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN   64 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS---------------------SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC---------------------CCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence            57889999999999999988887643                     356789999999877 56778899999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCCeEEE-eecCCeEEEEeCCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAYYLLT-GGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~~i~~~~~~~~~  123 (125)
                      +.+..+..+. .+..+.+++++..++. +..++.+.+|+..++.
T Consensus        65 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (301)
T d1l0qa2          65 NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT  107 (301)
T ss_dssp             EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ceeeeeeccc-cccccccccccccccccccccceeeecccccce
Confidence            9998888655 4678999999876654 5578889999987653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1.5e-13  Score=84.31  Aligned_cols=101  Identities=15%  Similarity=0.280  Sum_probs=73.7

Q ss_pred             CeeecCCCeEEEEECCCCcceeeec--CCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEE-EeCCCcEEEEEc
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFK--PHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVS-GHEDSSCVLYDI   77 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~d~   77 (125)
                      +++++.|++|++|++.....+..++  .+.                    ..+..++|+|++++|+. +..++.|++|++
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~--------------------~~v~~la~spDG~~L~v~~~~d~~i~~~~i   66 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVP--------------------GQVQPMVVSPDKRYLYVGVRPEFRVLAYRI   66 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECS--------------------SCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCC--------------------CCEeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            3688899999999997654433322  244                    67789999999998855 456899999998


Q ss_pred             CCCceeEEe---CCCCCceeEEEEccCCCeEEEeec-CCeEEEEeCCC
Q psy14458         78 RGSRPLQTF---KPHTADVRSIRFSPSAYYLLTGGY-DNKLVLTDLQG  121 (125)
Q Consensus        78 ~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~-d~~i~~~~~~~  121 (125)
                      ........+   ..+...+.+++|+|||+++++++. ++.+.+|+...
T Consensus        67 ~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~  114 (333)
T d1ri6a_          67 APDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED  114 (333)
T ss_dssp             CTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             eCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccc
Confidence            765432222   234455778999999999988875 77888887654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.49  E-value=4.8e-13  Score=82.15  Aligned_cols=103  Identities=10%  Similarity=0.039  Sum_probs=80.6

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLM-VSGHEDSSCVLYDIRG   79 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~i~~~d~~~   79 (125)
                      |++++.|++|.+||+.+++.+..+.....                   ..+.+++|+|+++++ +++..++.|++||+.+
T Consensus        11 l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-------------------~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t   71 (346)
T d1jmxb_          11 MIVTNYPNNLHVVDVASDTVYKSCVMPDK-------------------FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT   71 (346)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECSSC-------------------CSSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEcCCCEEEEEECCCCCEEEEEEcCCC-------------------CCcceEEECCCCCEEEEEECCCCcEEEEeCcc
Confidence            57899999999999999999887763221                   456799999999876 5666889999999999


Q ss_pred             CceeEEeCCCC------CceeEEEEccCCCeEEEee------------cCCeEEEEeCCCC
Q psy14458         80 SRPLQTFKPHT------ADVRSIRFSPSAYYLLTGG------------YDNKLVLTDLQGT  122 (125)
Q Consensus        80 ~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~------------~d~~i~~~~~~~~  122 (125)
                      ++.+..+....      ..+..+.|+|||++++.++            .+..+.+|+..++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~  132 (346)
T d1jmxb_          72 CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  132 (346)
T ss_dssp             TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             CeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccc
Confidence            98877665322      2356799999999887765            4677888877653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.47  E-value=6.4e-12  Score=75.85  Aligned_cols=120  Identities=13%  Similarity=0.140  Sum_probs=86.1

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCccc----------------------ccccCCCCCeEEEEECCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTT----------------------EAGTRQGSPVSALCVDPS   59 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------~~~~~~~~~i~~~~~~~~   59 (125)
                      +++..++.+.+|+..+.+....+..+. ....+.+.+...                      ............++++++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (301)
T d1l0qa2         132 VTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPE  210 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTT
T ss_pred             eeeccccceeeeeccccceeeecccCC-CceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeecccc
Confidence            466778889999998887776665332 344444433211                      111123355678899999


Q ss_pred             CCEEEEEe---CCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeE-EEeecCCeEEEEeCCCCC
Q psy14458         60 GRLMVSGH---EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYL-LTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        60 ~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~  123 (125)
                      +..++.+.   .++.|++||..+++.+..+.. ...+..++|+|||+++ ++++.|++|.+||+.++.
T Consensus       211 g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             SSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ccccccccccceeeeeeeeecCCCeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            98776554   346799999999998887774 4567899999999876 677789999999998763

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.40  E-value=1.6e-12  Score=82.99  Aligned_cols=76  Identities=11%  Similarity=0.095  Sum_probs=59.8

Q ss_pred             CCCeEEEEECCCCCEEEE-------EeCCCcEEEEEcCCCceeEEeC---------CCCCceeEEEEccCCCeEE-Ee--
Q psy14458         48 GSPVSALCVDPSGRLMVS-------GHEDSSCVLYDIRGSRPLQTFK---------PHTADVRSIRFSPSAYYLL-TG--  108 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~-------~~~~~~i~~~d~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~-~~--  108 (125)
                      +..+..++++|++.+++.       +..+++|++||+.+++....+.         .+...|.+++|+|||+.++ ++  
T Consensus       303 ~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~  382 (426)
T d1hzua2         303 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWN  382 (426)
T ss_dssp             SSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECC
T ss_pred             CCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEec
Confidence            377889999999999984       5567899999999887655442         3556788999999998664 32  


Q ss_pred             --ecCCeEEEEeCCCCC
Q psy14458        109 --GYDNKLVLTDLQGTM  123 (125)
Q Consensus       109 --~~d~~i~~~~~~~~~  123 (125)
                        +.++.|++||.++..
T Consensus       383 ~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         383 GKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             CTTSCCEEEEEETTTTE
T ss_pred             CCCCCCeEEEEECCCCe
Confidence              358889999998763

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.37  E-value=1.2e-11  Score=75.62  Aligned_cols=72  Identities=13%  Similarity=0.096  Sum_probs=63.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      .....++++|++.+++.+  ++.+++||+.+++.+..+. +...+.+++|+|||+++++++.|++|.+||.++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         241 VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             cceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            567788999999888766  5889999999999888876 66778999999999999999999999999998764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.34  E-value=9.1e-12  Score=76.35  Aligned_cols=73  Identities=14%  Similarity=0.108  Sum_probs=62.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..+..+.+++++.+++... ++.+.+||..+++.+..+. +...+.+++|+|||+++++++.|+.|.+||.+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         252 ELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             SCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             ceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence            5677888998887777665 4579999999999888776 55678999999999999999999999999998763

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.26  E-value=5.1e-10  Score=69.51  Aligned_cols=120  Identities=7%  Similarity=-0.104  Sum_probs=73.6

Q ss_pred             eecCCCeEEEEECCCCccee--eecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q psy14458          3 SGHEDSSCVLYDIRGSRPLQ--TFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         3 t~~~d~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (125)
                      ..+.++.+.+|+........  .............+.+............-........+..++....++.+.+||..++
T Consensus       229 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~  308 (373)
T d2madh_         229 WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG  308 (373)
T ss_pred             EecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC
Confidence            44567777778776654322  2222222333333322111111111111112223334445566777888999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccCCC--eEEEeecCCeEEEEeCCCCC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPSAY--YLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.+..+. +...+..+.|+|||+  ++++++.|++|++||+.++.
T Consensus       309 ~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~  352 (373)
T d2madh_         309 QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             cEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            9888776 667788999999998  45678899999999998874

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.24  E-value=1.1e-10  Score=74.98  Aligned_cols=101  Identities=12%  Similarity=0.203  Sum_probs=78.7

Q ss_pred             CCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeC---------CCcEEEEE
Q psy14458          6 EDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHE---------DSSCVLYD   76 (125)
Q Consensus         6 ~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------~~~i~~~d   76 (125)
                      +|+.+.+||+.+++....+..+.               ...+...+.++.|||++++|+.+++         ++.+.+||
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENST---------------FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTT---------------TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             cCCcEEEEECCCCCEEEEEchhh---------------hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            57789999999988765554332               1122367899999999999988753         46788999


Q ss_pred             cCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         77 IRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      +.+++. ..+..+...+..+.|+|||+.++.. .++.+.+|++.++.
T Consensus        99 ~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~  143 (470)
T d2bgra1          99 LNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP  143 (470)
T ss_dssp             TTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred             CCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCc
Confidence            998874 4477788889999999999999985 56789999987663

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.12  E-value=3.2e-10  Score=72.61  Aligned_cols=62  Identities=23%  Similarity=0.171  Sum_probs=55.6

Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        61 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      -++++.+.+|.|.+||..+++.+..+..+ ..+..++|+|||+++++++.|+++++||+.++.
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~   94 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE   94 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC
Confidence            34688999999999999999999999866 468999999999999999999999999997654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.10  E-value=8.5e-11  Score=72.52  Aligned_cols=111  Identities=14%  Similarity=0.062  Sum_probs=72.4

Q ss_pred             eeecCCCeEEEEECCCCcceee--ecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCC----------
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQT--FKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHED----------   69 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------   69 (125)
                      +.++.++.+++|++..++....  ...+.....          ...........+++++++..++....+          
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  279 (355)
T d2bbkh_         210 VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAER----------ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS  279 (355)
T ss_dssp             EEEBTTSEEEEEECTTSSCEECCCEESSCHHHH----------HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred             EEecCCCeEEEEecCCCcEEEEeccCCcccceE----------eeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCC
Confidence            4567788888888876543211  111110000          000000233457888888877665433          


Q ss_pred             CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCC--eEEEeecCCeEEEEeCCCCC
Q psy14458         70 SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAY--YLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        70 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~  123 (125)
                      ..|.+||..+++.+..+. +...+.+++|+|||+  ++++++.|+.|.+||++++.
T Consensus       280 ~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         280 RFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             EEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence            469999999998888776 445688999999997  45667789999999998774

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.01  E-value=2.2e-09  Score=66.04  Aligned_cols=96  Identities=13%  Similarity=0.107  Sum_probs=72.0

Q ss_pred             cCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEE----------eCCCcEEE
Q psy14458          5 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG----------HEDSSCVL   74 (125)
Q Consensus         5 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------~~~~~i~~   74 (125)
                      ..+..|.+||..+++.+..+....                      ...++|+|++++++..          ..++.|++
T Consensus        25 ~~~~~v~v~D~~tg~~~~~~~~g~----------------------~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v   82 (355)
T d2bbkh_          25 AAVTQQFVIDGEAGRVIGMIDGGF----------------------LPNPVVADDGSFIAHASTVFSRIARGERTDYVEV   82 (355)
T ss_dssp             CSSEEEEEEETTTTEEEEEEEECS----------------------SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCcCeEEEEECCCCcEEEEEECCC----------------------CCceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence            456679999999998887775432                      3368999999887664          34789999


Q ss_pred             EEcCCCceeEEeCCCC-------CceeEEEEccCCCeEEEee--cCCeEEEEeCCCC
Q psy14458         75 YDIRGSRPLQTFKPHT-------ADVRSIRFSPSAYYLLTGG--YDNKLVLTDLQGT  122 (125)
Q Consensus        75 ~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~  122 (125)
                      ||..+++....+..+.       .....+.|+|++++++..+  .+..+.+|+..++
T Consensus        83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~  139 (355)
T d2bbkh_          83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK  139 (355)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred             EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCC
Confidence            9999998777664222       2245689999999877654  5678999998765

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.94  E-value=1.2e-08  Score=63.22  Aligned_cols=78  Identities=10%  Similarity=0.009  Sum_probs=60.4

Q ss_pred             eecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCC--EEEEEeCCCcEEEEEcCCC
Q psy14458          3 SGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGR--LMVSGHEDSSCVLYDIRGS   80 (125)
Q Consensus         3 t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~   80 (125)
                      +...++.+.+||..+++.+..+. +.                    ..+..++|+|+++  ++++++.++.|++||+.++
T Consensus       293 ~~~~~~~v~~~d~~t~~~~~~~~-~~--------------------~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg  351 (373)
T d2madh_         293 LHAAAKEVTSVTGLVGQTSSQIS-LG--------------------HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             eecCCCeEEEEECCCCcEEEEec-CC--------------------CCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            34556677777777777666554 22                    5678999999997  4578899999999999999


Q ss_pred             ceeEEeCCCCCceeEEEEccC
Q psy14458         81 RPLQTFKPHTADVRSIRFSPS  101 (125)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~  101 (125)
                      +.+..+..+....+.+++.++
T Consensus       352 ~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         352 DQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CEEEEECCCCCCCcEEEEecC
Confidence            999999878777777777543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=1.2e-08  Score=61.97  Aligned_cols=104  Identities=13%  Similarity=0.209  Sum_probs=72.0

Q ss_pred             eeecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCC
Q psy14458          2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHE-DSSCVLYDIRGS   80 (125)
Q Consensus         2 ~t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~   80 (125)
                      +++..|+.|++|++........+..+.                 .....+..++|+|++++++.++. ++.+.+|+....
T Consensus        53 v~~~~d~~i~~~~i~~~~~~~~~~~~~-----------------~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~  115 (333)
T d1ri6a_          53 VGVRPEFRVLAYRIAPDDGALTFAAES-----------------ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG  115 (333)
T ss_dssp             EEETTTTEEEEEEECTTTCCEEEEEEE-----------------ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             EEECCCCeEEEEEEeCCCCcEEEeeec-----------------ccCCCceEEEEcCCCCEEeecccCCCceeeeccccc
Confidence            455668889999887654432222111                 01145678999999999888875 667899987765


Q ss_pred             ceeEE--eCCCCCceeEEEEccCCCeEEEee-cCCeEEEEeCCCC
Q psy14458         81 RPLQT--FKPHTADVRSIRFSPSAYYLLTGG-YDNKLVLTDLQGT  122 (125)
Q Consensus        81 ~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~  122 (125)
                      .....  ...+...+.++.++|+++.++.++ .+..+.+|+....
T Consensus       116 ~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_         116 LPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             EEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             cceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence            43332  335667788999999999887776 5667999987654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.91  E-value=8.3e-09  Score=64.25  Aligned_cols=93  Identities=13%  Similarity=-0.023  Sum_probs=69.6

Q ss_pred             CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEEc
Q psy14458          8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH----------EDSSCVLYDI   77 (125)
Q Consensus         8 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~i~~~d~   77 (125)
                      ..+.++|..+++.+..+..+.                      ...++|+|+++.++..+          .++.|.+||.
T Consensus        46 ~~~~~~d~~~~~~~~~~~~~~----------------------~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~  103 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSLGAF----------------------LSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP  103 (368)
T ss_dssp             EEEEEEETTTTEEEEEEEECT----------------------TCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred             ceEEEEeCCCCcEEEEEeCCC----------------------CCcceECCCCCEEEEEcccCccccccccCCeEEEEEC
Confidence            346677888888777665443                      23578999998887754          4678999999


Q ss_pred             CCCceeEEeCCCC-------CceeEEEEccCCCeEEEee-cCCeEEEEeCCCC
Q psy14458         78 RGSRPLQTFKPHT-------ADVRSIRFSPSAYYLLTGG-YDNKLVLTDLQGT  122 (125)
Q Consensus        78 ~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~  122 (125)
                      .+++....+..+.       .....+.|+|||++++.+. .++.+.+||+.++
T Consensus       104 ~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~  156 (368)
T d1mdah_         104 VTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA  156 (368)
T ss_dssp             TTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT
T ss_pred             CCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            9998877765322       2234689999999998776 5799999998765

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.57  E-value=1.3e-07  Score=58.70  Aligned_cols=103  Identities=16%  Similarity=0.074  Sum_probs=66.1

Q ss_pred             eecCCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCc
Q psy14458          3 SGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH-EDSSCVLYDIRGSR   81 (125)
Q Consensus         3 t~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~   81 (125)
                      +|..|+.|.+||..+++....+..+..+..             ........++|+|++++++.+. .++.+.+||+.+++
T Consensus        91 ~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~-------------~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~  157 (368)
T d1mdah_          91 KGKRTDYVEVFDPVTFLPIADIELPDAPRF-------------SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             SSSEEEEEEEECTTTCCEEEEEEETTSCSC-------------CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred             ccccCCeEEEEECCCCcEeeeecCCcccee-------------cccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence            456788899999999988777653321100             0012234689999999887775 57999999999998


Q ss_pred             eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         82 PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ....+..+.....   +......++..+.|+.+.++++..
T Consensus       158 ~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~  194 (368)
T d1mdah_         158 DDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             EEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCS
T ss_pred             EeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecC
Confidence            8887764433211   111233455556666666666543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.48  E-value=3.3e-07  Score=58.63  Aligned_cols=89  Identities=11%  Similarity=0.126  Sum_probs=61.4

Q ss_pred             CCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q psy14458          7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTF   86 (125)
Q Consensus         7 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~   86 (125)
                      ++.+.+||+.+++.. .+..+.                    ..+..+.|||+|+.++.. .++.+++|+..+++.....
T Consensus        91 ~~~~~l~d~~~~~~~-~l~~~~--------------------~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t  148 (470)
T d2bgra1          91 TASYDIYDLNKRQLI-TEERIP--------------------NNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRIT  148 (470)
T ss_dssp             EEEEEEEETTTTEEC-CSSCCC--------------------TTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECC
T ss_pred             CceEEEEECCCCccc-ccccCC--------------------ccccccccccCcceeeEe-ecccceEEECCCCceeeee
Confidence            456677887766532 334344                    678899999999999986 5678999998887655433


Q ss_pred             CCC------------------CCceeEEEEccCCCeEEEeecCCe-EEEE
Q psy14458         87 KPH------------------TADVRSIRFSPSAYYLLTGGYDNK-LVLT  117 (125)
Q Consensus        87 ~~~------------------~~~v~~~~~~~~~~~~~~~~~d~~-i~~~  117 (125)
                      ..+                  .+....+.|+|||+.|+....|.. +..+
T Consensus       149 ~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             eccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceE
Confidence            211                  223456889999999999876544 4433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.20  E-value=5e-06  Score=53.16  Aligned_cols=111  Identities=8%  Similarity=0.085  Sum_probs=68.9

Q ss_pred             CeeecCCCeEEEEECCCCcceeeecCCC-CCeEEEEecC---------cccccccCCCCCeEEEEECCCCCEEEEE-eCC
Q psy14458          1 MVSGHEDSSCVLYDIRGSRPLQTFKPHT-ADVRSIHLDH---------YTTEAGTRQGSPVSALCVDPSGRLMVSG-HED   69 (125)
Q Consensus         1 l~t~~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~   69 (125)
                      |+||+.+|.|++|++.+++.+..+.... .+-+...++.         ........|-.........|+|++++.. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            4789999999999999998877664311 0000000000         0000011122334445556889888555 477


Q ss_pred             CcEEEEEcCCCceeEEeC-CCCCceeEEEEccCCCe--EEEeecC
Q psy14458         70 SSCVLYDIRGSRPLQTFK-PHTADVRSIRFSPSAYY--LLTGGYD  111 (125)
Q Consensus        70 ~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--~~~~~~d  111 (125)
                      ++|.++|+.+++....+. ......+.++|+|+++.  ++..+.+
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~  138 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEF  138 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECS
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCC
Confidence            889999999998776554 35677899999999874  4444433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.05  E-value=0.00016  Score=43.60  Aligned_cols=74  Identities=20%  Similarity=0.247  Sum_probs=56.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc--eeEE-eCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR--PLQT-FKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      ..+.+++++++++++++...++.+..++.....  .... -.......+.+.+.++++++++-+.++.+..++..++
T Consensus        68 ~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~  144 (302)
T d2p4oa1          68 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  144 (302)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence            578899999999999998888888888865432  1111 1234456788999999999999888888888887654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.00  E-value=4.2e-05  Score=46.17  Aligned_cols=71  Identities=20%  Similarity=0.305  Sum_probs=56.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      ..+..++++|+|+++++...++.|+.++.....  ..+......+..++|.|+|+++++...++.+..+++..
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~--~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE--EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecc
Confidence            468899999999999999999999888855332  22333557789999999999999988888887777543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.96  E-value=0.00033  Score=42.57  Aligned_cols=72  Identities=15%  Similarity=0.231  Sum_probs=58.1

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCC-eEEEeecCCeEEEEeCCC
Q psy14458         50 PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAY-YLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~i~~~~~~~  121 (125)
                      ....+++.++|++.++....+.|.+||...++....+........+++|.|+++ ++++.+.++.|.-.++..
T Consensus       227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             cceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            356899999999988888889999999887776666665556788999999886 556677789999888753

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.91  E-value=0.00028  Score=41.55  Aligned_cols=72  Identities=10%  Similarity=0.105  Sum_probs=52.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC-CCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      .....++++++++++++-...+.|..++..... ...+. ..-.....|+++++|.++++-..++.|..++...
T Consensus       182 ~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         182 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             CSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             CCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence            456889999999988888888888888765433 22222 2224567899999999888877888888776543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.89  E-value=0.00011  Score=46.90  Aligned_cols=72  Identities=11%  Similarity=0.080  Sum_probs=52.8

Q ss_pred             CCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCc-----------eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEE
Q psy14458         49 SPVSALCVDPSGRLM-VSGHEDSSCVLYDIRGSR-----------PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVL  116 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~-~~~~~~~~i~~~d~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~  116 (125)
                      .....+.++|+|+++ +++..+++|.+||+.+.+           .+.......-...+.+|.++|..+.+...|.+|..
T Consensus       258 ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~k  337 (441)
T d1qnia2         258 KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCK  337 (441)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEE
Confidence            445788999999976 567788999999986522           11111112223466789999999999999999999


Q ss_pred             EeCC
Q psy14458        117 TDLQ  120 (125)
Q Consensus       117 ~~~~  120 (125)
                      |++.
T Consensus       338 w~~~  341 (441)
T d1qnia2         338 WNIA  341 (441)
T ss_dssp             EEHH
T ss_pred             eccc
Confidence            9974

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.89  E-value=0.00054  Score=40.74  Aligned_cols=72  Identities=7%  Similarity=0.217  Sum_probs=53.0

Q ss_pred             CCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCceeEEeCC--CCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHE-DSSCVLYDIRGSRPLQTFKP--HTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      .....+++.++++.+++-.. ++.|.+++ .+++.+..+..  .......+++.|+|.++++ ..+..|++|..+..
T Consensus       200 ~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         200 NYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             CSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             cCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeee
Confidence            45789999999997776543 45689997 45776666542  2345778999999976655 57899999998765

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=0.00013  Score=46.78  Aligned_cols=99  Identities=11%  Similarity=0.133  Sum_probs=64.9

Q ss_pred             CCCeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeC---------CCcEEEEE
Q psy14458          6 EDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHE---------DSSCVLYD   76 (125)
Q Consensus         6 ~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------~~~i~~~d   76 (125)
                      .++.|.+||+.+++....+....-                 ....+....+||++++++...+         .+.+.++|
T Consensus        35 ~~g~i~~~~~~~~~~~~l~~~~~~-----------------~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d   97 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTVLIEGKKI-----------------ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (465)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTTT-----------------TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             CCCcEEEEECCCCCEEEEEcCccc-----------------cccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence            566788888877765433332221                 1135667789999998877643         46788999


Q ss_pred             cCCCceeEE--eCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCC
Q psy14458         77 IRGSRPLQT--FKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        77 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  122 (125)
                      +.+++....  .......+....|+|||+.++-.. ++.+.+.+..++
T Consensus        98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~  144 (465)
T d1xfda1          98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGK  144 (465)
T ss_dssp             SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSS
T ss_pred             ccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCC
Confidence            988764332  223344566789999999988765 556777776543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.62  E-value=0.0012  Score=40.84  Aligned_cols=74  Identities=11%  Similarity=0.126  Sum_probs=51.9

Q ss_pred             CCeEEEEECCCCCEEEEEeC-CCcEEEEEcCC-Cce--eEEeC--CCCCceeEEEEccCCCeEEEee-cCCeEEEEeCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHE-DSSCVLYDIRG-SRP--LQTFK--PHTADVRSIRFSPSAYYLLTGG-YDNKLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~-~~~i~~~d~~~-~~~--~~~~~--~~~~~v~~~~~~~~~~~~~~~~-~d~~i~~~~~~~  121 (125)
                      ..+.++.|+|++++++.++. ...|.+|+... +..  .....  ......+++.|+|+++++.... .+++|.+|++..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            34789999999998877764 34688887644 222  11111  2345678999999999886655 589999999865


Q ss_pred             C
Q psy14458        122 T  122 (125)
Q Consensus       122 ~  122 (125)
                      .
T Consensus       225 ~  225 (365)
T d1jofa_         225 A  225 (365)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=0.0019  Score=37.54  Aligned_cols=61  Identities=16%  Similarity=0.136  Sum_probs=43.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCC---cEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDS---SCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY  110 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~---~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  110 (125)
                      ..+..-+|||+|+.|+......   .+.+.+...+.... +..+........|+|+|+.++....
T Consensus        39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~i~~~~~  102 (269)
T d2hqsa1          39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALS  102 (269)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             CceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE-EeeeecccccceecCCCCeeeEeee
Confidence            5677889999999998765443   36666665555443 3346777888999999988877553

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.51  E-value=0.0023  Score=37.49  Aligned_cols=73  Identities=14%  Similarity=0.130  Sum_probs=54.9

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG  121 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~  121 (125)
                      .....++++++++.+++...++.|..++.............-.....+++.++|+++++....+.|..++..+
T Consensus       140 ~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         140 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             CSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             CCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            3457899999999888888888899998765433322223445567899999999999888888888887654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=0.0027  Score=36.84  Aligned_cols=76  Identities=14%  Similarity=0.102  Sum_probs=48.5

Q ss_pred             CCCeEEEEECCCCCEEEEEeCC-CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec---CCeEEEEeCCCCC
Q psy14458         48 GSPVSALCVDPSGRLMVSGHED-SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY---DNKLVLTDLQGTM  123 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~~  123 (125)
                      ........|+|++..++..+.+ +...+|......................|+|||+.|+-.+.   ...|.++++.++.
T Consensus       170 ~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         170 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             cccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            3456677899999887766544 44444443332222233335556677899999998876543   3468888887653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.45  E-value=0.0028  Score=39.12  Aligned_cols=72  Identities=10%  Similarity=0.155  Sum_probs=47.0

Q ss_pred             CeEEEEECCCCCEEEEEeC------CCcEEEEEcCCCcee------EEeCCCCCceeEEEEcc-CCCeEEEe-ecCCeEE
Q psy14458         50 PVSALCVDPSGRLMVSGHE------DSSCVLYDIRGSRPL------QTFKPHTADVRSIRFSP-SAYYLLTG-GYDNKLV  115 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~------~~~i~~~d~~~~~~~------~~~~~~~~~v~~~~~~~-~~~~~~~~-~~d~~i~  115 (125)
                      ....+.++|++++++.+..      ...|..|++.....+      ............+.++| +|++++.+ ..++.|.
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~  335 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             CccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEE
Confidence            4568899999999877642      223666666442111      11112334567899998 78877666 5689999


Q ss_pred             EEeCCC
Q psy14458        116 LTDLQG  121 (125)
Q Consensus       116 ~~~~~~  121 (125)
                      +|+++.
T Consensus       336 v~~~~~  341 (365)
T d1jofa_         336 IYRWKD  341 (365)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            998654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.24  E-value=0.0012  Score=38.50  Aligned_cols=66  Identities=11%  Similarity=0.127  Sum_probs=46.1

Q ss_pred             EECCC--CCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec-C-----CeEEEEeCCCC
Q psy14458         55 CVDPS--GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY-D-----NKLVLTDLQGT  122 (125)
Q Consensus        55 ~~~~~--~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d-----~~i~~~~~~~~  122 (125)
                      .++|+  |+.++... ++.|++.|+.+++... +..+........|+|||+.|+-... +     ..|.+.+..++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEE-EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEE-EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            45677  88887664 5678899998877543 5546677888999999998876532 2     13666666544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.14  E-value=0.0086  Score=36.15  Aligned_cols=62  Identities=13%  Similarity=0.124  Sum_probs=48.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeec
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY  110 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  110 (125)
                      ..+..++|+++++++++-...+.|+.++..+++....+.........++++++|+++++...
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~  101 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLG  101 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECT
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecC
Confidence            55689999999998887778899999988776655555445566789999999998877543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.0021  Score=41.09  Aligned_cols=68  Identities=9%  Similarity=0.134  Sum_probs=44.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC-CCCCc-----------------eeEEEEccCCCeEEEeec
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK-PHTAD-----------------VRSIRFSPSAYYLLTGGY  110 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~-----------------v~~~~~~~~~~~~~~~~~  110 (125)
                      ..+....|||+|+.++... ++.|++.+...+...+... +..+.                 -..+.|+|||+.|+....
T Consensus       114 ~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         114 AKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             CCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             cccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence            3455678999999888775 5678888876655444332 11111                 246789999999998764


Q ss_pred             C-CeEEEE
Q psy14458        111 D-NKLVLT  117 (125)
Q Consensus       111 d-~~i~~~  117 (125)
                      | ..+..+
T Consensus       193 D~s~V~~~  200 (465)
T d1xfda1         193 NDSRVPIM  200 (465)
T ss_dssp             ECTTSCEE
T ss_pred             ccccccee
Confidence            3 334444

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.06  E-value=0.0085  Score=34.73  Aligned_cols=60  Identities=10%  Similarity=0.107  Sum_probs=39.0

Q ss_pred             CCeEEEEECCCCCEEEEEeC-C-----CcEEEEEcCCCceeEEeC------CCCCceeEEEEccCCCeEEEe
Q psy14458         49 SPVSALCVDPSGRLMVSGHE-D-----SSCVLYDIRGSRPLQTFK------PHTADVRSIRFSPSAYYLLTG  108 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~-~-----~~i~~~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~  108 (125)
                      ......+|||+|+.|+.... +     ..|.+++..+++......      ..........|+|+++.++..
T Consensus        41 ~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          41 GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             CcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            56678899999998875432 2     237777777665443211      112234568899999988764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.95  E-value=0.012  Score=34.68  Aligned_cols=73  Identities=10%  Similarity=0.135  Sum_probs=55.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC--CCCCceeEEEEccCCCeEEEeec-CCeEEEEeCCC
Q psy14458         48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK--PHTADVRSIRFSPSAYYLLTGGY-DNKLVLTDLQG  121 (125)
Q Consensus        48 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~-d~~i~~~~~~~  121 (125)
                      ......+++.++++.+++....+.|++||. .++.+..+.  +.......+++.|+|+++++-+. +..|.+++...
T Consensus       156 ~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G  231 (279)
T d1q7fa_         156 LEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG  231 (279)
T ss_dssp             CSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred             ccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC
Confidence            356778899999988888888899999986 456666664  33445778999999998887654 45688887543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.75  E-value=0.017  Score=37.96  Aligned_cols=53  Identities=15%  Similarity=0.090  Sum_probs=38.5

Q ss_pred             CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         70 SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        70 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      |.+.-+|+.+++........ .++..-..+-.+.+++.|+.|+.++.+|.+++.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe  518 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCc
Confidence            67888999999888776622 223322233366788889999999999999885

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.52  E-value=0.043  Score=35.90  Aligned_cols=53  Identities=9%  Similarity=0.100  Sum_probs=36.6

Q ss_pred             CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         70 SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        70 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      |.+.-+|..+++.+...+. ..+...-...-.+.+++.|+.|+.++.+|.+++.
T Consensus       457 G~l~AiD~~tGk~~W~~~~-~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe  509 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccEEEeCCCCCceEeeecC-CCCCCCceEEEcCCEEEEECCCCeEEEEECCCCc
Confidence            4577888888888776652 2222211222266788889999999999999875

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.40  E-value=0.045  Score=35.81  Aligned_cols=53  Identities=9%  Similarity=-0.041  Sum_probs=35.5

Q ss_pred             CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         70 SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        70 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      |.|..+|..+++.+.... ......+-...-.+.+++.++.|+.++.+|.+++.
T Consensus       444 G~l~AiD~~TG~~~W~~~-~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe  496 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKW-EKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccEEEeccCCCceeeEcC-CCCCCCcceeEecCCEEEEECCCCeEEEEECCCCc
Confidence            568888888888776655 22222211122245577789999999999999875

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.36  E-value=0.023  Score=37.24  Aligned_cols=78  Identities=14%  Similarity=0.199  Sum_probs=49.7

Q ss_pred             CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC
Q psy14458          8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK   87 (125)
Q Consensus         8 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~   87 (125)
                      +.+.-||+.+++.+..+....                     +...=.++-.+.+++.|+.|+.++.+|.++++.+.++.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~---------------------p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS---------------------PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS---------------------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCC---------------------CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            467778888887776654221                     10000122256788889999999999999999999887


Q ss_pred             CCCCceeE--EEEccCCC-eEEE
Q psy14458         88 PHTADVRS--IRFSPSAY-YLLT  107 (125)
Q Consensus        88 ~~~~~v~~--~~~~~~~~-~~~~  107 (125)
                      .-. .+..  +.|..+|+ +++.
T Consensus       516 ~~~-~~~~~P~ty~~~GkQYv~v  537 (573)
T d1kb0a2         516 TGT-GVVAAPSTYMVDGRQYVSV  537 (573)
T ss_dssp             CSS-CCCSCCEEEEETTEEEEEE
T ss_pred             CCC-CccccCEEEEECCEEEEEE
Confidence            322 2221  55556886 4433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.27  E-value=0.034  Score=36.31  Aligned_cols=79  Identities=13%  Similarity=0.192  Sum_probs=50.3

Q ss_pred             CeEEEEECCCCcceeeecCCCCCeEEEEecCcccccccCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeC
Q psy14458          8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK   87 (125)
Q Consensus         8 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~   87 (125)
                      +.+.-+|+.+++.+..+....                     ....-.+.-.+.+++.|+.||.++.+|..+++.+.+++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~---------------------~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT---------------------HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS---------------------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCC---------------------CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence            567778888887766554211                     11111122246788889999999999999999999887


Q ss_pred             CCCCcee--EEEEccCCC-eEEEe
Q psy14458         88 PHTADVR--SIRFSPSAY-YLLTG  108 (125)
Q Consensus        88 ~~~~~v~--~~~~~~~~~-~~~~~  108 (125)
                      .-. .+.  =+.|..+|+ +|+..
T Consensus       497 l~~-~~~~~P~ty~~dGkqyv~v~  519 (560)
T d1kv9a2         497 AQS-GIVAAPMTFELAGRQYVAIM  519 (560)
T ss_dssp             CSS-CCCSCCEEEEETTEEEEEEE
T ss_pred             CCC-CccccCEEEEECCEEEEEEE
Confidence            322 222  155556885 55443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.12  E-value=0.037  Score=35.15  Aligned_cols=29  Identities=14%  Similarity=0.287  Sum_probs=24.2

Q ss_pred             ceeEEEEccCCCeEEEee-cCCeEEEEeCC
Q psy14458         92 DVRSIRFSPSAYYLLTGG-YDNKLVLTDLQ  120 (125)
Q Consensus        92 ~v~~~~~~~~~~~~~~~~-~d~~i~~~~~~  120 (125)
                      ..+.+..+|||+++++++ .+.++.++|++
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence            356789999999987766 59999999986

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.10  E-value=0.086  Score=34.35  Aligned_cols=53  Identities=6%  Similarity=0.014  Sum_probs=37.0

Q ss_pred             CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         70 SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        70 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      |.+..+|+.+++.+.... .......-.+.-.+.+++.|+.|+.++.+|.+++.
T Consensus       438 G~l~A~D~~tGk~~W~~~-~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe  490 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVP-YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (560)
T ss_dssp             EEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEeCCCCeEeeecc-CCCCCCCceeEECCCEEEEECCCCcEEEEECCCCc
Confidence            568889999998877665 22222222222255677889999999999999875

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.06  E-value=0.014  Score=38.53  Aligned_cols=49  Identities=18%  Similarity=0.251  Sum_probs=34.7

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCce-eEEEEccCCC-eEEE
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADV-RSIRFSPSAY-YLLT  107 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~-~~~~  107 (125)
                      .+.+++.|+.||.++.+|..+++.+.++..-.... .=+.|..+|+ +++.
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav  533 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI  533 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEE
Confidence            46788889999999999999999999887322111 1145556775 4443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.01  E-value=0.035  Score=36.40  Aligned_cols=49  Identities=22%  Similarity=0.394  Sum_probs=35.6

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCce-eEEEEccCCC-eEEE
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADV-RSIRFSPSAY-YLLT  107 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~-~~~~  107 (125)
                      .+.+++.|+.||.++.+|..+++.+.+++.-.... .=+.|..+|+ +++.
T Consensus       496 agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i  546 (582)
T d1flga_         496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            56788889999999999999999999888322211 1156667885 5544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.96  E-value=0.015  Score=38.10  Aligned_cols=48  Identities=19%  Similarity=0.187  Sum_probs=35.0

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCcee--EEEEccCCC-eEEE
Q psy14458         59 SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVR--SIRFSPSAY-YLLT  107 (125)
Q Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~--~~~~~~~~~-~~~~  107 (125)
                      .+.+++.|+.|+.++.+|.++++.+.++..- ..+.  -+.|..||+ +++.
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~-~~~~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMP-SGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCCEEEEETTEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECC-CCceecceEEEECCEEEEEE
Confidence            4667888999999999999999999888732 2222  256666885 5544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=95.87  E-value=0.076  Score=31.84  Aligned_cols=59  Identities=8%  Similarity=0.023  Sum_probs=40.6

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCC----CceeEEEEccCCCeEEEe
Q psy14458         50 PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHT----ADVRSIRFSPSAYYLLTG  108 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~  108 (125)
                      ....++++++++.++.+...+.+...+..............    ...+.+.+.|+|.+.++-
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd  134 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA  134 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEE
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEec
Confidence            35689999999988888777778888876543222111111    135678999999888764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.66  E-value=0.15  Score=33.57  Aligned_cols=53  Identities=11%  Similarity=-0.023  Sum_probs=37.1

Q ss_pred             CcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCC
Q psy14458         70 SSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM  123 (125)
Q Consensus        70 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  123 (125)
                      |.|.-||..+++.+.... +......-.++-.+.+++.|+.|+.++.+|.+++.
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe  505 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCc
Confidence            578889998888776554 22222222223356678889999999999999875

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.17  E-value=0.15  Score=30.53  Aligned_cols=72  Identities=6%  Similarity=0.092  Sum_probs=49.9

Q ss_pred             CeEEEEECCCCCEE-EEEeCCCcEEEEEcCCC-ceeE-------EeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCC
Q psy14458         50 PVSALCVDPSGRLM-VSGHEDSSCVLYDIRGS-RPLQ-------TFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ  120 (125)
Q Consensus        50 ~i~~~~~~~~~~~~-~~~~~~~~i~~~d~~~~-~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~  120 (125)
                      ..+.++|+|+++.| ++-+..+.|+.|++... ....       .........-.+++.++|++.++....+.|.++|..
T Consensus       178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence            34679999999765 55566788999987642 1111       111112234578999999999998899999999865


Q ss_pred             C
Q psy14458        121 G  121 (125)
Q Consensus       121 ~  121 (125)
                      .
T Consensus       258 G  258 (319)
T d2dg1a1         258 G  258 (319)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.91  E-value=0.19  Score=30.42  Aligned_cols=72  Identities=15%  Similarity=0.178  Sum_probs=49.0

Q ss_pred             eEEEEECCCCCEEEEEeCC-CcEEEEEcCCCceeEEeC-CCCCceeEEEEccCCCeEEEeecC------CeEEEEeCCCC
Q psy14458         51 VSALCVDPSGRLMVSGHED-SSCVLYDIRGSRPLQTFK-PHTADVRSIRFSPSAYYLLTGGYD------NKLVLTDLQGT  122 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~  122 (125)
                      ....++.+++.+++.|+.+ ..+.+||..+......-. .....-.+....+|+++++.++.+      ..+.+||..+.
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            3456788899998888655 579999998765433211 112223456777899999998753      35888888764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.16  E-value=0.47  Score=28.57  Aligned_cols=73  Identities=21%  Similarity=0.204  Sum_probs=47.0

Q ss_pred             CeEEEEECCCCCEEEEEeCC-----C------cEEEEEcCCCcee--EEe-CCCCCceeEEEEccCCCeEEEeecC-CeE
Q psy14458         50 PVSALCVDPSGRLMVSGHED-----S------SCVLYDIRGSRPL--QTF-KPHTADVRSIRFSPSAYYLLTGGYD-NKL  114 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~~~~-----~------~i~~~d~~~~~~~--~~~-~~~~~~v~~~~~~~~~~~~~~~~~d-~~i  114 (125)
                      .+...+...+++.++.|+.+     +      .+.+||..+++..  ... ..+........+.+++++++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            33445556677877777632     1      3678999886432  222 2343444567788999999998765 578


Q ss_pred             EEEeCCCC
Q psy14458        115 VLTDLQGT  122 (125)
Q Consensus       115 ~~~~~~~~  122 (125)
                      .+||..+.
T Consensus       101 ~~yd~~~~  108 (387)
T d1k3ia3         101 SLYDSSSD  108 (387)
T ss_dssp             EEEEGGGT
T ss_pred             eEecCccC
Confidence            99987643

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.92  E-value=0.5  Score=29.39  Aligned_cols=58  Identities=7%  Similarity=0.195  Sum_probs=38.1

Q ss_pred             CeEEEEECCCCCEEEEE-e----CCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEe
Q psy14458         50 PVSALCVDPSGRLMVSG-H----EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTG  108 (125)
Q Consensus        50 ~i~~~~~~~~~~~~~~~-~----~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  108 (125)
                      .+..+++||++++++-+ +    +.-.++++|+.+++.+...- .......+.|.+|++.|+-.
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~  188 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYN  188 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEE
Confidence            45567899999887642 2    33459999999998654221 11122468899998877644

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.13  E-value=0.82  Score=26.87  Aligned_cols=58  Identities=16%  Similarity=0.245  Sum_probs=44.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEc-cCCCeEEE
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS-PSAYYLLT  107 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~  107 (125)
                      .....+++.++|++.++.-..+.|..||. .++.+..+..-...+++++|- ||.+.|..
T Consensus       199 g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         199 GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             ccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEE
Confidence            45788999999998888878889999995 677777776444568999995 56554443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.95  E-value=0.86  Score=26.78  Aligned_cols=73  Identities=8%  Similarity=0.041  Sum_probs=51.1

Q ss_pred             CCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCC------c--eeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeC
Q psy14458         49 SPVSALCVDPSGRLM-VSGHEDSSCVLYDIRGS------R--PLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL  119 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~-~~~~~~~~i~~~d~~~~------~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~  119 (125)
                      ...+.++|+++++.+ ++-+..+.|+.+++...      +  ....+....+....+++..+|.+.++.-..+.|..+|.
T Consensus       148 ~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp  227 (295)
T d2ghsa1         148 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  227 (295)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC
Confidence            345789999998755 55556788988886421      1  12223334455678899999998888878888999986


Q ss_pred             CC
Q psy14458        120 QG  121 (125)
Q Consensus       120 ~~  121 (125)
                      .+
T Consensus       228 ~G  229 (295)
T d2ghsa1         228 DG  229 (295)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.71  E-value=1.3  Score=26.79  Aligned_cols=68  Identities=6%  Similarity=-0.032  Sum_probs=50.9

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEE
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVL  116 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~  116 (125)
                      +..-++..++....+..-+.-|.+++||+.++.++..-+-....|..-+-..+..-+++...+|.+.-
T Consensus       256 DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         256 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             CcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence            45568888888889999999999999999999999877766666665554444445555556666543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.89  E-value=2.6  Score=26.04  Aligned_cols=60  Identities=7%  Similarity=-0.022  Sum_probs=28.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEe
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTG  108 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  108 (125)
                      ....+++|++.+..++++..++.-.--++.....+.........|.+|.|-.+..+++.-
T Consensus       171 ~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         171 NSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             SSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CCceEEEEeCCcEEEEEeCCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            456677777777666666433211111222111111111123457778887666666543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.47  E-value=2.5  Score=25.50  Aligned_cols=71  Identities=13%  Similarity=0.234  Sum_probs=49.8

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecCCeEEEEeCCCCCCC
Q psy14458         51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMRP  125 (125)
Q Consensus        51 i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  125 (125)
                      -.+.-++|..+.++.-. ...+.++|+.+.+.+..+.. ...|.--.|-.+ +.|+-.+ +..++=|++.+...|
T Consensus        65 AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P  135 (327)
T d1utca2          65 ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQP  135 (327)
T ss_dssp             CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCC
T ss_pred             hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCc
Confidence            34566889888887775 56799999999999998874 446666677544 3444443 345889999765554

>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Sema domain
family: Sema domain
domain: Semaphorin 3a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.76  E-value=4.2  Score=25.94  Aligned_cols=67  Identities=13%  Similarity=0.217  Sum_probs=43.4

Q ss_pred             CeEEEEECC----C--CCEEEEEeCCCcEE-EEEcCCC-------ceeEEeC--CCCCceeEEEEccCCCeEEEeecCCe
Q psy14458         50 PVSALCVDP----S--GRLMVSGHEDSSCV-LYDIRGS-------RPLQTFK--PHTADVRSIRFSPSAYYLLTGGYDNK  113 (125)
Q Consensus        50 ~i~~~~~~~----~--~~~~~~~~~~~~i~-~~d~~~~-------~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~  113 (125)
                      ..+.++.+.    +  ...++.|+.+|.|. +.-...+       ..+..+.  .+..+|..+.+++++.+|..++.++.
T Consensus       405 ~~T~iav~~v~~~~~~~tV~flGT~~G~l~Kv~~~~~~~~~~~~~~~iee~~~~~~~~pI~~l~l~~~~~~Lyv~t~~~V  484 (495)
T d1q47a_         405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV  484 (495)
T ss_dssp             CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred             eeEEEEEEEEeccCCcEEEEEEEcCCCEEEEEEEcCCCCccccceeEEEEEeecCCCCceEEEEEeCCCCEEEEEeCCeE
Confidence            356666532    2  25678899999976 3322211       1223332  35667899999999999999999887


Q ss_pred             EEE
Q psy14458        114 LVL  116 (125)
Q Consensus       114 i~~  116 (125)
                      +++
T Consensus       485 ~~v  487 (495)
T d1q47a_         485 AQL  487 (495)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=81.47  E-value=4.4  Score=25.36  Aligned_cols=53  Identities=9%  Similarity=0.153  Sum_probs=37.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce--eEEeC------CCCCceeEEEEccC
Q psy14458         49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRP--LQTFK------PHTADVRSIRFSPS  101 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~------~~~~~v~~~~~~~~  101 (125)
                      ...++|+|.|+++++++--..|.|++++..+++.  +..+.      .-......|+++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            5677999999999888875679999998776543  22222      11245678999984

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.36  E-value=3.3  Score=23.81  Aligned_cols=74  Identities=15%  Similarity=0.076  Sum_probs=42.9

Q ss_pred             CCeEEEEECCCCCEEEEEe--CCCcEEEEEcCCCceeEEeCCCCCceeEEEEccCCCeE-EEeecCCeEEEEeCCCC
Q psy14458         49 SPVSALCVDPSGRLMVSGH--EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYL-LTGGYDNKLVLTDLQGT  122 (125)
Q Consensus        49 ~~i~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~  122 (125)
                      .....++++|...++.-..  ..+.|.-.++............-.....+++.+.+..| .+-...+.|...++.+.
T Consensus       120 ~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCC
Confidence            5677888888655554433  33445555543332222222233456788888865544 44456778888887654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=80.63  E-value=5  Score=25.43  Aligned_cols=39  Identities=5%  Similarity=0.016  Sum_probs=28.1

Q ss_pred             EEEEEcCCCceeEEeCCCCCceeEEEEccCCCeEEEeecC
Q psy14458         72 CVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD  111 (125)
Q Consensus        72 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d  111 (125)
                      +.+.|..+++....... .+....+.++|+|+++++.+.+
T Consensus       175 ~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             EEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESC
T ss_pred             EEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEecc
Confidence            56788888776665542 2345578999999999888753