Psyllid ID: psy14482

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MFDNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGPCQMTGPVCLGCLKAIV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHcccccccHcccccEEEEccHHHHHHHHHHHHHHccccHHcccHHcccEEEEccccccccEEEEcccEEEccccccccEEEccccccc
Coil and Loop (DISEMBL)
mfdnicglcgetakqkcsgcqliYYCCRehqkihwkkhkshcrpmklcedkvlGRYYIASRSikagevvlrepplvqgpcqmtgpvclgclkaiv
Flexible Loop (DISEMBL)
mfdnicglcgetakqkcsGCQLIYYCCREHQKIhwkkhkshcrpmKLCEDKVLGRYYIASRSIKAGEVVLREPPlvqgpcqmtgpvCLGCLKAIV
Low Complexity Region (SEG)
MFDNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGPCQMTGPVCLGCLKAIV
Disordered region (IsUnstruct)
***NICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGPCQMTGPVCLGCLKA**
Disordered Region (DISOPRED)
MFDNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCED************IKAGEVVLREPPLVQGPCQMTGPVCLGCLKAIV
Disordered Region (DISEMBL)
MFDNICGLCGETAKQKCSGCQLIYYCCREHQKI*********RPMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGPCQMTGPVCLGCLKAIV
Disordered Region (DISPRO)
*FDNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGPCQMTGPVCLGCLKAI*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFDNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGPCQMTGPVCLGCLKAIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
Q55DW9	1043	Rho GTPase-activating pro	yes	N/A	0.421	0.038	0.45	1e-06
O75800	440	Zinc finger MYND domain-c	yes	N/A	0.389	0.084	0.486	2e-05
Q99ML0	440	Zinc finger MYND domain-c	yes	N/A	0.389	0.084	0.513	0.0002

>sp|Q55DW9|GACZ_DICDI Rho GTPase-activating protein gacZ OS=Dictyostelium discoideum GN=gacZ PE=3 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query: 3   DNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
           + +C +C     Q C+GC ++YYC  EHQ I W  HKS C
Sbjct: 68  EEVCVICKSKNVQVCTGCLMVYYCGAEHQNIDWPNHKSLC 107

Rho GTPase-activating protein involved in the signal transduction pathway.
Dictyostelium discoideum (taxid: 44689)

>sp|O75800|ZMY10_HUMAN Zinc finger MYND domain-containing protein 10 OS=Homo sapiens GN=ZMYND10 PE=1 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query: 6   CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
           C  C   A ++CS CQ  +YCCRE Q  HW+KH   C
Sbjct: 394 CAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC 430

Homo sapiens (taxid: 9606)

>sp|Q99ML0|ZMY10_MOUSE Zinc finger MYND domain-containing protein 10 OS=Mus musculus GN=Zmynd10 PE=2 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 24/37 (64%)

Query: 6   CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
           CG C   A ++CS CQ ++YCCRE Q  HW+KH   C
Sbjct: 394 CGYCNAEASKRCSRCQNVWYCCRECQVKHWEKHGKTC 430

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
157125402	546	hypothetical protein AaeL_AAEL001936 [Ae	0.957	0.166	0.538	1e-23
158288115	522	AGAP011530-PA [Anopheles gambiae str. PE	0.947	0.172	0.522	4e-23
357603389	544	hypothetical protein KGM_20849 [Danaus p	0.894	0.156	0.564	5e-22
312373795	486	hypothetical protein AND_16998 [Anophele	0.915	0.179	0.505	1e-21
156550498	519	PREDICTED: protein msta, isoform A-like	0.968	0.177	0.526	1e-21
195170308	515	GL10122 [Drosophila persimilis] gi|19411	0.957	0.176	0.494	2e-21
194756896	517	GF13486 [Drosophila ananassae] gi|190622	0.989	0.181	0.489	3e-21
198461003	515	GA25085 [Drosophila pseudoobscura pseudo	0.957	0.176	0.494	3e-21
195426423	515	GK20779 [Drosophila willistoni] gi|19415	0.957	0.176	0.483	4e-21
189239848	829	PREDICTED: similar to CG8503 CG8503-PA [	0.957	0.109	0.516	8e-21

>gi|157125402|ref|XP_001654323.1| hypothetical protein AaeL_AAEL001936 [Aedes aegypti] gi|108882687|gb|EAT46912.1| AAEL001936-PA [Aedes aegypti]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 66/91 (72%)

Query: 5   ICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSIK 64
           IC +C + AK++CSGC   YYC  EHQ+  WK HK+ C P K+C D+  GRY +A++ IK
Sbjct: 25  ICPVCNQPAKKRCSGCSAAYYCSVEHQRQDWKNHKNVCHPFKICSDERYGRYMMATKDIK 84

Query: 65  AGEVVLREPPLVQGPCQMTGPVCLGCLKAIV 95
           AG+VVL+E PLV GP Q+T PVC+GCL+ + 
Sbjct: 85  AGDVVLKESPLVYGPAQITNPVCVGCLQGLT 115

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158288115|ref|XP_309979.4| AGAP011530-PA [Anopheles gambiae str. PEST] gi|157019319|gb|EAA05706.4| AGAP011530-PA [Anopheles gambiae str. PEST]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 68/90 (75%)

Query: 5  ICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSIK 64
          IC +C + A ++CS C ++YYCC EHQ+  WK HK+ C+P K+  ++  GR+ +A+R IK
Sbjct: 1  ICPVCKKEASKRCSRCAMVYYCCVEHQQQDWKVHKTTCQPFKIFSNEQYGRFLVATRDIK 60

Query: 65 AGEVVLREPPLVQGPCQMTGPVCLGCLKAI 94
          AGE+VL+E PLV GP Q+TGPVC+GCL+ +
Sbjct: 61 AGEIVLKESPLVHGPAQITGPVCVGCLQGL 90

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357603389|gb|EHJ63740.1| hypothetical protein KGM_20849 [Danaus plexippus]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 64/85 (75%)

Query: 6  CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSIKA 65
          C +C    +QKCSGCQ+++YC R+HQK HWK HK HC P K+ E   +GRY  A+R+IKA
Sbjct: 7  CEVCLTPTEQKCSGCQIVHYCSRDHQKRHWKLHKLHCVPAKIKELPGIGRYLEATRTIKA 66

Query: 66 GEVVLREPPLVQGPCQMTGPVCLGC 90
          G+V+++E PL+ GP Q+T PVCLGC
Sbjct: 67 GDVIMKEAPLITGPAQITPPVCLGC 91

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373795|gb|EFR21480.1| hypothetical protein AND_16998 [Anopheles darlingi]

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 63/87 (72%)

Query: 2  FDNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASR 61
           + IC +C   A ++CS C L+YYC  EHQ+ HWKKHK+ C P K+  ++  GR+ +A+R
Sbjct: 10 IEKICPVCQVEATKRCSRCALVYYCSVEHQQQHWKKHKATCNPFKVFSNEQFGRFLVATR 69

Query: 62 SIKAGEVVLREPPLVQGPCQMTGPVCL 88
           I+AGEVV++EPPLV GP Q+TGP+ +
Sbjct: 70 EIRAGEVVIKEPPLVHGPAQITGPIAI 96

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550498|ref|XP_001601757.1| PREDICTED: protein msta, isoform A-like [Nasonia vitripennis]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 3   DNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRS 62
           + +C +C   AKQKC GC+ ++YC REHQK HW++H + C+  KL E++ LGR+Y+A R 
Sbjct: 8   EEVCAVCKVPAKQKCGGCKSVFYCGREHQKAHWREHSAKCKSYKLVENEKLGRHYVAIRR 67

Query: 63  IKAGEVVLRE-PPLVQGPCQMTGPVCLGCLKAI 94
           I+AGEVV+RE   LVQ P Q T P+CLGC K +
Sbjct: 68  IEAGEVVIREDDALVQAPQQETVPICLGCYKPL 100

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195170308|ref|XP_002025955.1| GL10122 [Drosophila persimilis] gi|194110819|gb|EDW32862.1| GL10122 [Drosophila persimilis]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 63/91 (69%)

Query: 4  NICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSI 63
          N C +C +  K KCS C  + YC  +HQK  WK HKS C P K+  + +LGR+ +A+R+I
Sbjct: 2  NPCNVCDQPTKSKCSNCNQVSYCSVQHQKQDWKAHKSSCHPFKIAHNDLLGRHLVATRTI 61

Query: 64 KAGEVVLREPPLVQGPCQMTGPVCLGCLKAI 94
          K  E++L+E PLV+GP Q+T PVC+GCL +I
Sbjct: 62 KPYEIILKEAPLVRGPAQITPPVCMGCLNSI 92

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194756896|ref|XP_001960706.1| GF13486 [Drosophila ananassae] gi|190622004|gb|EDV37528.1| GF13486 [Drosophila ananassae]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 64/94 (68%)

Query: 1  MFDNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIAS 60
          M  N C +C E  K KCS C  + YC  +HQK  WK HK++C P K+   + LGR+ +A+
Sbjct: 1  MSPNPCHVCQEPTKTKCSNCNQVSYCSVQHQKQDWKAHKTNCHPFKIAHSEQLGRHLVAT 60

Query: 61 RSIKAGEVVLREPPLVQGPCQMTGPVCLGCLKAI 94
          R+IK  E++LRE PLV+GP Q++ PVC+GCL +I
Sbjct: 61 RTIKPYEIILREAPLVRGPAQISAPVCMGCLNSI 94

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198461003|ref|XP_002138938.1| GA25085 [Drosophila pseudoobscura pseudoobscura] gi|198137203|gb|EDY69496.1| GA25085 [Drosophila pseudoobscura pseudoobscura]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 63/91 (69%)

Query: 4  NICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSI 63
          N C +C +  K KCS C  + YC  +HQK  WK HKS C P K+  + +LGR+ +A+R+I
Sbjct: 2  NPCNVCEQPTKSKCSNCNQVSYCSVQHQKQDWKAHKSSCHPFKIAHNDLLGRHLVATRTI 61

Query: 64 KAGEVVLREPPLVQGPCQMTGPVCLGCLKAI 94
          K  E++L+E PLV+GP Q+T PVC+GCL +I
Sbjct: 62 KPYEIILKEAPLVRGPAQITPPVCMGCLNSI 92

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195426423|ref|XP_002061334.1| GK20779 [Drosophila willistoni] gi|194157419|gb|EDW72320.1| GK20779 [Drosophila willistoni]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 63/91 (69%)

Query: 4  NICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSI 63
          N C +C E  K  CS C  + YC  +HQK  WK HK +C P K+  ++VLGR+ +A+R+I
Sbjct: 2  NSCQVCAEPTKNNCSNCNQVSYCSVQHQKQDWKSHKPNCHPYKIAHNEVLGRHLVATRNI 61

Query: 64 KAGEVVLREPPLVQGPCQMTGPVCLGCLKAI 94
          K  E++L+E PLV+GP Q++ PVC+GCL +I
Sbjct: 62 KPYEIILKEAPLVRGPAQISAPVCMGCLNSI 92

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239848|ref|XP_973542.2| PREDICTED: similar to CG8503 CG8503-PA [Tribolium castaneum]

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 66/91 (72%)

Query: 4  NICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSI 63
          N C +C + A  KC  C   +YC ++HQ+ HWK+HKS C+P K+CED VLGR+ +A+R++
Sbjct: 5  NRCEVCEKPALHKCGKCHNAHYCDKKHQREHWKQHKSVCQPFKICEDAVLGRHLVATRAL 64

Query: 64 KAGEVVLREPPLVQGPCQMTGPVCLGCLKAI 94
          K GEVV++E PL+ GP   + PVCLGC KA+
Sbjct: 65 KPGEVVIQEAPLIWGPSYNSIPVCLGCGKAV 95

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
FB|FBgn0033917	513	CG8503 [Drosophila melanogaste	0.957	0.177	0.505	1e-22
FB|FBgn0036839	530	CG18136 [Drosophila melanogast	0.894	0.160	0.5	7.9e-20
FB|FBgn0033061	553	CG14590 [Drosophila melanogast	0.778	0.133	0.486	5.5e-16
ZFIN|ZDB-GENE-110408-34	328	si:ch1073-423n4.1 "si:ch1073-4	0.4	0.115	0.538	9.3e-08
WB|WBGene00011116	386	pdcd-2 [Caenorhabditis elegans	0.4	0.098	0.447	1e-07
FB|FBgn0030257	532	CG11160 [Drosophila melanogast	0.494	0.088	0.468	1.7e-07
FB|FBgn0021875	347	Zfrp8 "Zinc finger protein RP-	0.515	0.141	0.408	1.7e-07
MGI|MGI:2387863	440	Zmynd10 "zinc finger, MYND dom	0.389	0.084	0.513	3.4e-07
DICTYBASE|DDB_G0284069	426	DDB_G0284069 "Programmed cell	0.494	0.110	0.416	8.7e-07
RGD|1303250	440	Zmynd10 "zinc finger, MYND-typ	0.389	0.084	0.486	1.2e-06

FB|FBgn0033917 CG8503 [Drosophila melanogaster (taxid:7227)]

 Score = 269 (99.8 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 46/91 (50%), Positives = 61/91 (67%)

Query:     4 NICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSI 63
             N C +C E  K KCS C  + YC  +HQK  WK HK  C P K+  ++ LGR+ +A+R+I
Sbjct:     2 NPCHVCEEPTKNKCSNCNQVSYCSVQHQKQDWKVHKPSCHPFKIAHNEQLGRHLVATRTI 61

Query:    64 KAGEVVLREPPLVQGPCQMTGPVCLGCLKAI 94
             K  E+VL+E PLV+GP Q++ PVCLGCL  I
Sbjct:    62 KPYEIVLKEAPLVRGPAQISAPVCLGCLNGI 92

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0042826 "histone deacetylase binding" evidence=ISS

GO:0010629 "negative regulation of gene expression" evidence=ISS

FB|FBgn0036839 CG18136 [Drosophila melanogaster (taxid:7227)]

 Score = 243 (90.6 bits), Expect = 7.9e-20, P = 7.9e-20
 Identities = 43/86 (50%), Positives = 58/86 (67%)

Query:     6 CGLCGETAKQKCSGCQLIYYCCREHQKIHWKK-HKSHCRPMKLCEDKVLGRYYIASRSIK 64
             C LC   A Q C+ C+ + YC REHQK HWKK H+S C+  ++  ++VLGR+  A+R IK
Sbjct:     9 CALCQAKASQLCAACRNVVYCSREHQKEHWKKGHRSECQCFEIATNEVLGRHLRATRDIK 68

Query:    65 AGEVVLREPPLVQGPCQMTGPVCLGC 90
              GE +L+E PLV GP   + P+CLGC
Sbjct:    69 IGEQILKEAPLVLGPKVASAPLCLGC 94

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=ISS

GO:0042826 "histone deacetylase binding" evidence=ISS

FB|FBgn0033061 CG14590 [Drosophila melanogaster (taxid:7227)]

 Score = 208 (78.3 bits), Expect = 5.5e-16, P = 5.5e-16
 Identities = 36/74 (48%), Positives = 48/74 (64%)

Query:     6 CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSIKA 65
             C +CG  A Q C+ C+++ YC REHQK HW +HK  CRP    +D  LGRY   +++I A
Sbjct:     7 CPVCGVAASQACTRCKMVRYCDREHQKQHWPQHKRRCRPFSEEQDAELGRYLKVTQNIAA 66

Query:    66 GEVVLREPPLVQGP 79
             G++V  E PLV GP
Sbjct:    67 GQIVFIEEPLVVGP 80

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=ISS

GO:0042826 "histone deacetylase binding" evidence=ISS

ZFIN|ZDB-GENE-110408-34 si:ch1073-423n4.1 "si:ch1073-423n4.1" [Danio rerio (taxid:7955)]

 Score = 128 (50.1 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 21/39 (53%), Positives = 26/39 (66%)

Query:     6 CGLCGETAKQ-KCSGCQLIYYCCREHQKIHWKKHKSHCR 43
             C LCG+     KC  C++ +YC +EHQK HWKKHK  CR
Sbjct:    17 CELCGKMENLLKCGRCRISFYCSKEHQKEHWKKHKLTCR 55

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

WB|WBGene00011116 pdcd-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 110 (43.8 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query:     5 ICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
             +C +CG +A +KC+ CQ+  YC + HQ I W  HK  C
Sbjct:   145 LCRICGCSAAKKCAKCQVARYCSQAHQVIDWPAHKLEC 182

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

FB|FBgn0030257 CG11160 [Drosophila melanogaster (taxid:7227)]

 Score = 129 (50.5 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 22/47 (46%), Positives = 31/47 (65%)

Query:    44 PMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGPCQMTGPVCLGC 90
             P ++    + GRY +A+R ++AGE ++RE PL  GPC    PVCLGC
Sbjct:    48 PYRVEHSDIYGRYLVANRQLEAGETLIREEPLAIGPCVSGDPVCLGC 94

GO:0005737 "cytoplasm" evidence=IDA

GO:0042826 "histone deacetylase binding" evidence=ISS

GO:0010629 "negative regulation of gene expression" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

FB|FBgn0021875 Zfrp8 "Zinc finger protein RP-8" [Drosophila melanogaster (taxid:7227)]

 Score = 126 (49.4 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query:     5 ICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVL 53
             +C  CG  A   CS C+ I+YC  EHQ+ HW +HK +C   ++  +K L
Sbjct:   127 LCAACGCHAPHACSKCKAIHYCSSEHQRAHWPQHKPNCGAPEVATEKPL 175

GO:0005634 "nucleus" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008283 "cell proliferation" evidence=IMP

GO:0048103 "somatic stem cell division" evidence=IMP

GO:0035162 "embryonic hemopoiesis" evidence=IMP

MGI|MGI:2387863 Zmynd10 "zinc finger, MYND domain containing 10" [Mus musculus (taxid:10090)]

 Score = 125 (49.1 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 19/37 (51%), Positives = 24/37 (64%)

Query:     6 CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
             CG C   A ++CS CQ ++YCCRE Q  HW+KH   C
Sbjct:   394 CGYCNAEASKRCSRCQNVWYCCRECQVKHWEKHGKTC 430

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

DICTYBASE|DDB_G0284069 DDB_G0284069 "Programmed cell death protein 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 121 (47.7 bits), Expect = 8.7e-07, P = 8.7e-07
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query:     4 NICGLCGETAKQKCSGCQLIYYCCREHQKIHWKK-HKSHCRPMKLCED 50
             N C  CG  AK  CSGC+ ++YC +EHQ++ W+  H   C+ +K   D
Sbjct:   131 NTCEYCGCFAKSNCSGCKKVHYCGKEHQQLDWQLGHSEQCKLLKDIND 178

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1303250 Zmynd10 "zinc finger, MYND-type containing 10" [Rattus norvegicus (taxid:10116)]

 Score = 120 (47.3 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query:     6 CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
             C  C   A ++CS CQ ++YCCRE Q  HW+KH   C
Sbjct:   394 CAYCSAEASKRCSRCQKVWYCCRECQVKHWEKHGKTC 430

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	95
pfam01753	39	pfam01753, zf-MYND, MYND finger	5e-07

>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger

 Score = 42.0 bits (99), Expect = 5e-07
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 6  CGLCGETAKQ--KCSGCQLIYYCCREHQKIHWKKHKSHC 42
          C +CG+ A +  +CS C+ +YYC +E QK  W  HK  C
Sbjct: 1  CAVCGKEALKLLRCSRCKSVYYCSKECQKADWPYHKKEC 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
PF01753	37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	99.53
KOG1710|consensus	396		99.01
KOG2084|consensus	482		97.83
PF13824	55	zf-Mss51: Zinc-finger of mitochondrial splicing su	97.65
KOG3612|consensus	588		97.59
PF00856	162	SET: SET domain; InterPro: IPR001214 The SET domai	97.36
KOG2061|consensus	362		96.63
PF04438	30	zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc	96.1
PLN03158	396	methionine aminopeptidase; Provisional	96.05
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	94.92
KOG3362|consensus	156		94.44
smart00317	116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	94.09
KOG2857|consensus	157		92.8
PRK01343	57	zinc-binding protein; Provisional	87.31
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	86.12
PF10013	42	DUF2256: Uncharacterized protein conserved in bact	81.7

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.53  E-value=3.3e-15  Score=73.91  Aligned_cols=37  Identities=43%  Similarity=1.162  Sum_probs=33.9

Q ss_pred             CcccCccccCCCCCCCceeecCHHHHHhhhhcccccc
Q psy14482          6 CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC   42 (95)
Q Consensus         6 C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~Hk~~C   42 (95)
                      |.+|+++++.+|++|+.++|||++||+.||..|+.+|
T Consensus         1 C~~C~~~~~~~C~~C~~~~YCs~~Cq~~~w~~Hk~~C   37 (37)
T PF01753_consen    1 CAVCGKPALKRCSRCKSVYYCSEECQRADWPYHKFEC   37 (37)
T ss_dssp             -TTTSSCSSEEETTTSSSEESSHHHHHHHHHHHCCTH
T ss_pred             CcCCCCCcCCcCCCCCCEEecCHHHHHHHHHHHhhhC
Confidence            7889998888999999999999999999998899876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....

>KOG1710|consensus

Probab=99.01  E-value=2.1e-11  Score=83.99  Aligned_cols=42  Identities=43%  Similarity=0.993  Sum_probs=39.6

Q ss_pred             CcCcccCcc-ccCCCCCCCceeecCHHHHHhhhhccccccCCc
Q psy14482          4 NICGLCGET-AKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPM   45 (95)
Q Consensus         4 ~~C~~C~~~-~~~~C~~c~~~~ycs~~cq~~~w~~Hk~~C~~i   45 (95)
                      +.|..||++ +.++||.|+.+.||+.+||+.||..||+.|..+
T Consensus       320 ~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf~HKK~C~~L  362 (396)
T KOG1710|consen  320 QFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWFIHKKVCSFL  362 (396)
T ss_pred             ccccccCCCCccchhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            579999998 599999999999999999999999999999987

>KOG2084|consensus

Probab=97.83  E-value=2.1e-05  Score=56.75  Aligned_cols=62  Identities=34%  Similarity=0.599  Sum_probs=46.6

Q ss_pred             hhhhccccccCCcccccc-ccccceEEEcCCCCCCcEEEeeCCceEccCCCCcccccc-----ccccc
Q psy14482         33 IHWKKHKSHCRPMKLCED-KVLGRYYIASRSIKAGEVVLREPPLVQGPCQMTGPVCLG-----CLKAI   94 (95)
Q Consensus        33 ~~w~~Hk~~C~~i~~~~~-~~~gR~~va~r~i~~geii~~E~p~~~~p~~~~~~~c~~-----C~~~~   94 (95)
                      .+|..++......+.... +..||+++|+++|..|++|+.|.|++.+|.......|.+     |++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~Gr~~~a~~~i~~g~~i~~e~p~~~~p~~~~~~~c~~~~~~~C~~~~   70 (482)
T KOG2084|consen    3 KDLKSDPRNGLNVEEVANSPELGRGLVATQAIEAGEVILEEEPLVVGPASKSCSRCLGCSCDHCRRCL   70 (482)
T ss_pred             chhccCccccCCcccccCccccCcceeeecccCCCceEEecCcceeeecccCCccccccchhhhhcCC
Confidence            456665554444443333 478999999999999999999999999999976666665     76653

>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51

Probab=97.65  E-value=1.6e-05  Score=42.12  Aligned_cols=45  Identities=20%  Similarity=0.666  Sum_probs=39.1

Q ss_pred             cCcccCc----cccCCCCCCCceeecCHHHHHhhhhccccccCCccccc
Q psy14482          5 ICGLCGE----TAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCE   49 (95)
Q Consensus         5 ~C~~C~~----~~~~~C~~c~~~~ycs~~cq~~~w~~Hk~~C~~i~~~~   49 (95)
                      .|.+|++    .....|..|...+|||+++-..|.+.|++.|..++...
T Consensus         1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e~H~~~c~~LRqvN   49 (55)
T PF13824_consen    1 LCPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYEEHRQLCERLRQVN   49 (55)
T ss_pred             CCCCCccccccccCCcCCCCCCcCccCHHHHHHhHHHHHHHHHHHHHhc
Confidence            3777887    56889999999999999999999999999998887543

>KOG3612|consensus

Probab=97.59  E-value=7.9e-06  Score=60.42  Aligned_cols=38  Identities=37%  Similarity=0.797  Sum_probs=32.3

Q ss_pred             CcccCccccCCCCCCCceeecCHHHHHhhhhccccccCCc
Q psy14482          6 CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPM   45 (95)
Q Consensus         6 C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~Hk~~C~~i   45 (95)
                      |++|...+..-|  |-...|||.+||+.||..|+..|+.-
T Consensus       530 C~nC~~EAiy~C--CWNTSYCsveCQQ~HW~~H~ksCrrk  567 (588)
T KOG3612|consen  530 CYNCLDEAIYHC--CWNTSYCSVECQQGHWPEHRKSCRRK  567 (588)
T ss_pred             HHhhhHHHHHHh--hccccccCcchhhccchhHhhhhccc
Confidence            777887777666  55789999999999999999999753

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Probab=97.36  E-value=0.00015  Score=44.45  Aligned_cols=27  Identities=48%  Similarity=0.680  Sum_probs=22.1

Q ss_pred             cceEEEcCCCCCCcEEEeeCCceEccC
Q psy14482         54 GRYYIASRSIKAGEVVLREPPLVQGPC   80 (95)
Q Consensus        54 gR~~va~r~i~~geii~~E~p~~~~p~   80 (95)
                      ||+++|+++|++||+|+.+.++++.+.
T Consensus         1 GrGl~At~dI~~Ge~I~~p~~~~~~~~   27 (162)
T PF00856_consen    1 GRGLFATRDIKAGEVILIPRPAILTPD   27 (162)
T ss_dssp             SEEEEESS-B-TTEEEEEESEEEEEHH
T ss_pred             CEEEEECccCCCCCEEEEECcceEEeh
Confidence            899999999999999998888887754

The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....

>KOG2061|consensus

Probab=96.63  E-value=0.0011  Score=47.36  Aligned_cols=46  Identities=37%  Similarity=0.912  Sum_probs=40.7

Q ss_pred             CCcCcccCccccCCCCCCCceeecCHHHHHhhhhc-cccccCCcccc
Q psy14482          3 DNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKK-HKSHCRPMKLC   48 (95)
Q Consensus         3 ~~~C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~-Hk~~C~~i~~~   48 (95)
                      +..|..|+..+...|+.|+.+.|||..+|..||.. |+..|...+..
T Consensus       136 ~~~~~~~~~~a~~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~~  182 (362)
T KOG2061|consen  136 ADLCGSCGCSAPAACSPCKAAAYCSKKHQSLDWPKGHKDACAQPSTL  182 (362)
T ss_pred             cchhccCcccCcccccccchhhhcCchhhcccccccccccccCcccc
Confidence            45688888888999999999999999999999999 99999876644

>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.10  E-value=0.0031  Score=29.38  Aligned_cols=28  Identities=36%  Similarity=0.942  Sum_probs=21.8

Q ss_pred             CcCcccCccccCCCCCCCceeecCHHHHH
Q psy14482          4 NICGLCGETAKQKCSGCQLIYYCCREHQK   32 (95)
Q Consensus         4 ~~C~~C~~~~~~~C~~c~~~~ycs~~cq~   32 (95)
                      ..|.+|+.++..+|.+|. ..|||-+|-+
T Consensus         3 ~~C~vC~~~~kY~Cp~C~-~~~CSl~C~k   30 (30)
T PF04438_consen    3 KLCSVCGNPAKYRCPRCG-ARYCSLACYK   30 (30)
T ss_dssp             EEETSSSSEESEE-TTT---EESSHHHHH
T ss_pred             CCCccCcCCCEEECCCcC-CceeCcEeEC
Confidence            578999998899999998 6799998864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.

>PLN03158 methionine aminopeptidase; Provisional

Probab=96.05  E-value=0.0041  Score=45.17  Aligned_cols=37  Identities=30%  Similarity=0.736  Sum_probs=32.4

Q ss_pred             CcCcccCccccCCCCCCCc-------eeecCHHHHHhhhhcccc
Q psy14482          4 NICGLCGETAKQKCSGCQL-------IYYCCREHQKIHWKKHKS   40 (95)
Q Consensus         4 ~~C~~C~~~~~~~C~~c~~-------~~ycs~~cq~~~w~~Hk~   40 (95)
                      ..|..|++++.+.|-.|..       .++||.+|=+..|+.||.
T Consensus        10 ~~c~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~   53 (396)
T PLN03158         10 LACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSSHKS   53 (396)
T ss_pred             ccccCCCCcccccCccchhcCCCCCCceeECHHHHHHHHHHHHH
Confidence            4699999999999999853       689999999999999875

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=94.92  E-value=0.012  Score=29.69  Aligned_cols=33  Identities=21%  Similarity=0.437  Sum_probs=24.9

Q ss_pred             CCCcCcccCccccCCCCCCCceeecCHHHHHhhhhc
Q psy14482          2 FDNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKK   37 (95)
Q Consensus         2 ~~~~C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~   37 (95)
                      |.+.|..|.+.-..   .-...-|||++|+..|+..
T Consensus         5 F~~yC~~Cdk~~~~---~~~~~lYCSe~Cr~~D~~~   37 (43)
T PF12855_consen    5 FNDYCIVCDKQIDP---PDDGSLYCSEECRLKDQEK   37 (43)
T ss_pred             hhhHHHHhhccccC---CCCCccccCHHHHhHhhhc
Confidence            67788888875322   3345789999999999876

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>KOG3362|consensus

Probab=94.44  E-value=0.013  Score=36.89  Aligned_cols=33  Identities=30%  Similarity=0.743  Sum_probs=29.1

Q ss_pred             CcCcccCccccCCCCCCCceeecCHHHHHhhhhc
Q psy14482          4 NICGLCGETAKQKCSGCQLIYYCCREHQKIHWKK   37 (95)
Q Consensus         4 ~~C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~   37 (95)
                      ..|++||-.+...|..|. ..|||..|...|...
T Consensus       119 ~fCaVCG~~S~ysC~~CG-~kyCsv~C~~~HneT  151 (156)
T KOG3362|consen  119 KFCAVCGYDSKYSCVNCG-TKYCSVRCLKTHNET  151 (156)
T ss_pred             hhhhhcCCCchhHHHhcC-Cceeechhhhhcccc
Confidence            469999988999999998 899999999888653

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Probab=94.09  E-value=0.077  Score=30.76  Aligned_cols=30  Identities=17%  Similarity=0.011  Sum_probs=24.9

Q ss_pred             cccccceEEEcCCCCCCcEEEeeCCceEcc
Q psy14482         50 DKVLGRYYIASRSIKAGEVVLREPPLVQGP   79 (95)
Q Consensus        50 ~~~~gR~~va~r~i~~geii~~E~p~~~~p   79 (95)
                      .+..|++++|+++|++|++|+...+.+..+
T Consensus         7 ~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~   36 (116)
T smart00317        7 SPGKGWGVRATEDIPKGEFIGEYVGEIITS   36 (116)
T ss_pred             cCCCcEEEEECCccCCCCEEEEEEeEEECH
Confidence            357799999999999999888777776654

Putative methyl transferase, based on outlier plant homologues

>KOG2857|consensus

Probab=92.80  E-value=0.077  Score=33.40  Aligned_cols=37  Identities=38%  Similarity=0.876  Sum_probs=29.4

Q ss_pred             cCcccCccc-cCCCCCCCceeecCHHHHHhhhhcccc--ccCCcc
Q psy14482          5 ICGLCGETA-KQKCSGCQLIYYCCREHQKIHWKKHKS--HCRPMK   46 (95)
Q Consensus         5 ~C~~C~~~~-~~~C~~c~~~~ycs~~cq~~~w~~Hk~--~C~~i~   46 (95)
                      .|..|.+.. ..+|..|. +.|||-.|    |+.||.  .|.+.+
T Consensus         7 tC~ic~e~~~KYKCpkC~-vPYCSl~C----fKiHk~tPq~~~ve   46 (157)
T KOG2857|consen    7 TCVICLESEIKYKCPKCS-VPYCSLPC----FKIHKSTPQCETVE   46 (157)
T ss_pred             eehhhhcchhhccCCCCC-Cccccchh----hhhccCCccccccC
Confidence            578888865 88999996 99999998    666776  676654

>PRK01343 zinc-binding protein; Provisional

Probab=87.31  E-value=0.69  Score=24.70  Aligned_cols=30  Identities=17%  Similarity=0.545  Sum_probs=21.2

Q ss_pred             CCcCcccCccccCCCCCCCceeecCHHHHHhhhhc
Q psy14482          3 DNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKK   37 (95)
Q Consensus         3 ~~~C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~   37 (95)
                      ...|-.|+++...     ....|||+.|+..|--.
T Consensus         9 ~~~CP~C~k~~~~-----~~rPFCS~RC~~iDLg~   38 (57)
T PRK01343          9 TRPCPECGKPSTR-----EAYPFCSERCRDIDLNR   38 (57)
T ss_pred             CCcCCCCCCcCcC-----CCCcccCHHHhhhhHHH
Confidence            3468888876542     34679999999997543

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=86.12  E-value=0.51  Score=25.35  Aligned_cols=32  Identities=19%  Similarity=0.438  Sum_probs=23.8

Q ss_pred             CCcCcccCccccCCCCCCCceeecCHHHHHhhhhcccc
Q psy14482          3 DNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKS   40 (95)
Q Consensus         3 ~~~C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~Hk~   40 (95)
                      ...|-+||++-..      .-.|||++|+...++..+.
T Consensus         3 HkHC~~CG~~Ip~------~~~fCS~~C~~~~~k~qk~   34 (59)
T PF09889_consen    3 HKHCPVCGKPIPP------DESFCSPKCREEYRKRQKR   34 (59)
T ss_pred             CCcCCcCCCcCCc------chhhhCHHHHHHHHHHHHH
Confidence            4568888886432      3679999999988887554

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=81.70  E-value=0.27  Score=24.58  Aligned_cols=31  Identities=26%  Similarity=0.742  Sum_probs=19.9

Q ss_pred             CCCcCcccCccc--cCCCCCC-CceeecCHHHHH
Q psy14482          2 FDNICGLCGETA--KQKCSGC-QLIYYCCREHQK   32 (95)
Q Consensus         2 ~~~~C~~C~~~~--~~~C~~c-~~~~ycs~~cq~   32 (95)
                      ....|.+|+.+.  .++-..+ ..|.|||+.|..
T Consensus         7 p~K~C~~C~rpf~WRKKW~~~Wd~VkYCS~rCR~   40 (42)
T PF10013_consen    7 PSKICPVCGRPFTWRKKWARCWDEVKYCSDRCRR   40 (42)
T ss_pred             CCCcCcccCCcchHHHHHHHhchhhccHHHHhcc
Confidence            345788888764  3333333 258899998865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	95
2d8q_A	70	Solution Structure Of The Mynd Domain Of The Human		4e-04
2dan_A	60	The Solution Structure Of The Mynd Domain (Leu384-C		6e-04

>pdb|2D8Q|A Chain A, Solution Structure Of The Mynd Domain Of The Human Zinc Finger Mynd Domain-Containing Protein 10 Length = 70

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 6  CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
          C  C   A ++CS CQ  +YCCRE Q  HW+KH   C
Sbjct: 18 CAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC 54

>pdb|2DAN|A Chain A, The Solution Structure Of The Mynd Domain (Leu384-Cys430) Of Human Zinc Finger Mynd Domain Containing Protein 10 Length = 60

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 6  CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
          C  C   A ++CS CQ  +YCCRE Q  HW+KH   C
Sbjct: 18 CAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	2e-12
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	8e-12
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	9e-12
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	1e-11
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	2e-11
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	2e-07
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	5e-06
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	3e-05

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70

 Score = 56.2 bits (135), Expect = 2e-12
 Identities = 18/41 (43%), Positives = 22/41 (53%)

Query: 6  CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMK 46
          C  C   A ++CS CQ  +YCCRE Q  HW+KH   C    
Sbjct: 18 CAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAA 58

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60

 Score = 54.2 bits (130), Expect = 8e-12
 Identities = 15/43 (34%), Positives = 17/43 (39%)

Query: 4  NICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMK 46
            C  CG  A + CSGC    YC    Q   W+KH   C    
Sbjct: 16 ESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICSGPS 58

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64

 Score = 54.2 bits (130), Expect = 9e-12
 Identities = 15/42 (35%), Positives = 17/42 (40%)

Query: 4  NICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPM 45
            C  CG  A + CSGC    YC    Q   W+KH   C   
Sbjct: 18 ESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQT 59

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60

 Score = 53.8 bits (129), Expect = 1e-11
 Identities = 15/45 (33%), Positives = 18/45 (40%)

Query: 6  CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCED 50
          C  CG  A + CSGC    YC    Q   W+KH   C      + 
Sbjct: 16 CWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQ 60

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52

 Score = 53.3 bits (128), Expect = 2e-11
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 6  CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPM 45
          C  CG  A  +C+GC  + YC    Q+  WK H+  C   
Sbjct: 12 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQS 51

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 46.5 bits (109), Expect = 2e-07
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 42 CRPMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGPC-QMTGPVCLGCLKAI 94
             +++   +  GR   A++   A +V+  E          +   VC  C K  
Sbjct: 6  MENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQ 59

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 41.8 bits (97), Expect = 5e-06
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 42 CRPMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGPC-QMTGPVCLGCLK 92
             ++       G    A   ++ GE++ R  PL    C    G VC  CL 
Sbjct: 4  PLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLL 55

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 1/50 (2%)

Query: 44 PMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGPC-QMTGPVCLGCLK 92
           ++       GR   A R    G+++   P           G  C  C  
Sbjct: 8  GLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFA 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	99.57
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	99.54
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	99.54
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	99.54
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	99.52
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.88
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.82
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.7
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.69
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.68
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.66
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	96.76
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	96.33
1n3j_A	119	A612L, histone H3 lysine methyltransferase; beta b	95.28
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	94.09
3f9x_A	166	Histone-lysine N-methyltransferase SETD8; methyltr	93.64
3ope_A	222	Probable histone-lysine N-methyltransferase ASH1L;	93.49
3ooi_A	232	Histone-lysine N-methyltransferase, H3 lysine-36 l	92.65
3h6l_A	278	Histone-lysine N-methyltransferase SETD2; SET doma	92.05
3hna_A	287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	90.07
3smt_A	497	Histone-lysine N-methyltransferase SETD3; histone	89.03
1wvo_A	79	Sialic acid synthase; antifreeze protein like doma	87.93
2w5y_A	192	Histone-lysine N-methyltransferase HRX; transcript	87.71
1lv3_A	68	Hypothetical protein YACG; zinc finger, rubredoxin	83.65
3bo5_A	290	Histone-lysine N-methyltransferase setmar; SET dom	81.41
1mvh_A	299	Cryptic LOCI regulator 4; lysine methyltransferase	81.0
2f69_A	261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	80.61

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A

Probab=99.57  E-value=1.4e-15  Score=84.29  Aligned_cols=47  Identities=38%  Similarity=0.828  Sum_probs=43.0

Q ss_pred             CCCcCcccCccccCCCCCCCceeecCHHHHHhhhhccccccCCcccc
Q psy14482          2 FDNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLC   48 (95)
Q Consensus         2 ~~~~C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~Hk~~C~~i~~~   48 (95)
                      ....|..|+++++++|++|+.++|||++||+.||+.||.+|..+...
T Consensus        14 ~~~~C~~C~~~~~~~Cs~Ck~v~YCs~eCQ~~~W~~HK~~C~~~~~~   60 (70)
T 2d8q_A           14 ERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQG   60 (70)
T ss_dssp             CCCBCSSSCCBCCCBCTTTSCCBCSCHHHHHHTHHHHHHHCCCCCCC
T ss_pred             CCCcCCCCCCcccccCCCCCCEeeCCHHHhHHHHHHHHHHHHHHHHh
Confidence            35689999999999999999999999999999999999999987644

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=99.54  E-value=3.5e-15  Score=80.35  Aligned_cols=44  Identities=34%  Similarity=0.752  Sum_probs=41.2

Q ss_pred             CCcCcccCccccCCCCCCCceeecCHHHHHhhhhccccccCCcc
Q psy14482          3 DNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMK   46 (95)
Q Consensus         3 ~~~C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~Hk~~C~~i~   46 (95)
                      ...|+.|+++++++|++|+.++|||++||+.||+.||.+|..+.
T Consensus        15 ~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~~W~~Hk~~C~~~~   58 (60)
T 2dj8_A           15 SESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICSGPS   58 (60)
T ss_dssp             SCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHHHHTTTSCCSS
T ss_pred             CcccccCCCCCcccCCCCCCEeeeCHHHHHHHHHHHHHHHHhcc
Confidence            46899999999999999999999999999999999999998764

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}

Probab=99.54  E-value=4.4e-15  Score=79.99  Aligned_cols=45  Identities=33%  Similarity=0.716  Sum_probs=41.6

Q ss_pred             CCCcCcccCccccCCCCCCCceeecCHHHHHhhhhccccccCCcc
Q psy14482          2 FDNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMK   46 (95)
Q Consensus         2 ~~~~C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~Hk~~C~~i~   46 (95)
                      ....|..|+++++++|++|+.++|||++||+.||+.||.+|..+.
T Consensus        12 ~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~dW~~Hk~~C~~~~   56 (60)
T 2od1_A           12 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTL   56 (60)
T ss_dssp             CSSCCTTTSSCCCEECTTTSCCEESSHHHHHHHHHHHTTTSSCSS
T ss_pred             CCCccccCCCcccccCCCCCCeeecCHHHHHHHHHHHhHHHcccc
Confidence            357899999999999999999999999999999999999998654

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}

Probab=99.54  E-value=3.4e-15  Score=81.32  Aligned_cols=44  Identities=34%  Similarity=0.754  Sum_probs=41.2

Q ss_pred             CCcCcccCccccCCCCCCCceeecCHHHHHhhhhccccccCCcc
Q psy14482          3 DNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMK   46 (95)
Q Consensus         3 ~~~C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~Hk~~C~~i~   46 (95)
                      ...|..|+++++++|++|+.++|||++||+.||+.||.+|..+.
T Consensus        17 ~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~~W~~Hk~~C~~~~   60 (64)
T 2odd_A           17 SESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTL   60 (64)
T ss_dssp             SSSCTTTSSCCCEEETTTSCCEESSHHHHHHHHHHHTTTTTSSC
T ss_pred             CCcCccccCCCcccCCCCCChhhCCHHHHHHHHHHHhHHHhccc
Confidence            56899999999999999999999999999999999999998764

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=99.52  E-value=6.4e-15  Score=77.11  Aligned_cols=43  Identities=33%  Similarity=0.831  Sum_probs=38.6

Q ss_pred             CCCcCcccCccccCCCCCCCceeecCHHHHHhhhhccccccCC
Q psy14482          2 FDNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRP   44 (95)
Q Consensus         2 ~~~~C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~Hk~~C~~   44 (95)
                      ....|..|+++.+++|++|+.++|||++||+.||+.||.+|.+
T Consensus         8 ~~~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C~~   50 (52)
T 2jw6_A            8 KEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQ   50 (52)
T ss_dssp             ---CCSSSSSSCSEECTTTCSSEESSHHHHHHHTTTGGGTTTC
T ss_pred             cCCcCCCCCCCCcCcCCCCCCEeecCHHHHHHHHHHHCHHHcc
Confidence            3578999999999999999999999999999999999999974

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.88  E-value=3.6e-10  Score=80.82  Aligned_cols=45  Identities=33%  Similarity=0.725  Sum_probs=40.7

Q ss_pred             CCcCcccCcc--ccCCCCCCCceeecCHHHHHhhhhccccccCCccc
Q psy14482          3 DNICGLCGET--AKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKL   47 (95)
Q Consensus         3 ~~~C~~C~~~--~~~~C~~c~~~~ycs~~cq~~~w~~Hk~~C~~i~~   47 (95)
                      ...|..|+++  .+.+|++|+.++|||++||+.||+.||.+|..+..
T Consensus        49 ~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~l~~   95 (433)
T 3qww_A           49 GHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVV   95 (433)
T ss_dssp             TTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHHTTTHHHHHH
T ss_pred             CCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHHHHHHHHHHH
Confidence            4689999986  58899999999999999999999999999987754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.82  E-value=5.4e-10  Score=79.67  Aligned_cols=46  Identities=33%  Similarity=0.790  Sum_probs=40.9

Q ss_pred             CCcCcccCcc--ccCCCCCCCceeecCHHHHHhhhhccccccCCcccc
Q psy14482          3 DNICGLCGET--AKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLC   48 (95)
Q Consensus         3 ~~~C~~C~~~--~~~~C~~c~~~~ycs~~cq~~~w~~Hk~~C~~i~~~   48 (95)
                      ...|..|+++  .+.+|++|+.++|||++||+.||+.||.+|+.+...
T Consensus        47 ~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~~   94 (429)
T 3qwp_A           47 GVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSC   94 (429)
T ss_dssp             TTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHHHHHHHHHHHHT
T ss_pred             CCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhhhHHhhhhHHhc
Confidence            5689999984  588999999999999999999999999999887543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.70  E-value=2.2e-09  Score=77.76  Aligned_cols=45  Identities=31%  Similarity=0.752  Sum_probs=40.2

Q ss_pred             CCcCcccCcc--ccCCCCCCCceeecCHHHHHhhhhccccccCCccc
Q psy14482          3 DNICGLCGET--AKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKL   47 (95)
Q Consensus         3 ~~~C~~C~~~--~~~~C~~c~~~~ycs~~cq~~~w~~Hk~~C~~i~~   47 (95)
                      ...|..|+++  .+.+|++|+.++|||++||+.||+.||.+|..+..
T Consensus        49 ~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~   95 (490)
T 3n71_A           49 NFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKK   95 (490)
T ss_dssp             TTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhHHHHHhHHHHh
Confidence            4679999875  58899999999999999999999999999987654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.69  E-value=1.4e-08  Score=73.52  Aligned_cols=50  Identities=20%  Similarity=0.306  Sum_probs=43.6

Q ss_pred             CccccccccccceEEEcCCCCCCcEEEeeCCceEccCC-CCcccccccccc
Q psy14482         44 PMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGPCQ-MTGPVCLGCLKA   93 (95)
Q Consensus        44 ~i~~~~~~~~gR~~va~r~i~~geii~~E~p~~~~p~~-~~~~~c~~C~~~   93 (95)
                      ++++..++..||+++|+++|++||+|+.|.|+++.+.. .....|.+|+++
T Consensus         8 ~v~v~~~~~~GR~lvAtr~i~~Ge~Il~e~P~~~v~~~~~~~~~C~~C~~~   58 (490)
T 3n71_A            8 NVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKR   58 (490)
T ss_dssp             TEEEEECSSSCEEEEESSCBCTTCEEEEECCSEEEECGGGTTTBCTTTCCB
T ss_pred             ceEEEecCCCCceEEeccCCCCCCEEEecCCceEEecccccCCcCCCCCCC
Confidence            46677888999999999999999999999999976655 478999999875

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.68  E-value=1.4e-08  Score=72.65  Aligned_cols=50  Identities=18%  Similarity=0.214  Sum_probs=44.2

Q ss_pred             CccccccccccceEEEcCCCCCCcEEEeeCCceEccCCC-Ccccccccccc
Q psy14482         44 PMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGPCQM-TGPVCLGCLKA   93 (95)
Q Consensus        44 ~i~~~~~~~~gR~~va~r~i~~geii~~E~p~~~~p~~~-~~~~c~~C~~~   93 (95)
                      ++++..++..||+++|+++|++||+|+.|.|+++++... ...+|.+|+++
T Consensus         8 ~ve~~~~~~~GRgl~A~r~i~~Ge~Il~e~P~a~~~~~~~~~~~C~~C~~~   58 (433)
T 3qww_A            8 GLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFAR   58 (433)
T ss_dssp             TEEEEECTTSCEEEEESSCBCTTCEEEEEECSEEEECGGGTTTBCTTTCCB
T ss_pred             cEEEeecCCCcCeEEECCCCCCCCEEEecCCceEEecccccCCcCCccccc
Confidence            356677888999999999999999999999999998654 78999999985

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.66  E-value=1.9e-08  Score=71.73  Aligned_cols=49  Identities=27%  Similarity=0.463  Sum_probs=42.9

Q ss_pred             ccccccccccceEEEcCCCCCCcEEEeeCCceEccCCC-Ccccccccccc
Q psy14482         45 MKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGPCQM-TGPVCLGCLKA   93 (95)
Q Consensus        45 i~~~~~~~~gR~~va~r~i~~geii~~E~p~~~~p~~~-~~~~c~~C~~~   93 (95)
                      ++...++..||+++|+++|++||+|+.|.|++.+|... ...+|.+|+++
T Consensus         7 i~~~~~~~~GR~l~Atr~i~~Ge~Il~e~P~~~~~~~~~~~~~C~~C~~~   56 (429)
T 3qwp_A            7 VEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLG   56 (429)
T ss_dssp             EEEEECSSSSEEEEESSCBCTTCEEEEECCSEEEECGGGBTTBCTTTCCB
T ss_pred             eeecccCCCCCeEEeCCCCCCCCEEEecCCceeeeccccCCCcCcCCCCc
Confidence            34445778899999999999999999999999999874 78999999975

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.76  E-value=0.0011  Score=34.57  Aligned_cols=38  Identities=29%  Similarity=0.765  Sum_probs=31.1

Q ss_pred             CcCcccCccccCCCCCCCceeecCHHHHHhhhhccccccCCcc
Q psy14482          4 NICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMK   46 (95)
Q Consensus         4 ~~C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~Hk~~C~~i~   46 (95)
                      ..|.+|+.++..+|.+|. +.|||-+|.+.|-.    .|...+
T Consensus        13 ~~C~vC~~~~kY~CPrC~-~~yCSl~C~k~Hk~----~C~~~~   50 (56)
T 2yqq_A           13 VVCVICLEKPKYRCPACR-VPYCSVVCFRKHKE----QCNPET   50 (56)
T ss_dssp             CCCTTTCSCCSEECTTTC-CEESSHHHHHHHHH----HCCCCC
T ss_pred             CccCcCcCCCeeeCCCCC-CCeeCHHHHHHHHh----hCcCCc
Confidence            469999998899999998 99999999877654    376543

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2

Probab=96.33  E-value=0.0019  Score=33.95  Aligned_cols=30  Identities=30%  Similarity=0.814  Sum_probs=25.9

Q ss_pred             CcCcccCc----cccCCCCCCCceeecCHHHHHhh
Q psy14482          4 NICGLCGE----TAKQKCSGCQLIYYCCREHQKIH   34 (95)
Q Consensus         4 ~~C~~C~~----~~~~~C~~c~~~~ycs~~cq~~~   34 (95)
                      ..|.+|+.    ++..+|.+|. +.|||-.|.+.|
T Consensus        12 ~~C~vC~~~~~~~akY~CPrC~-~rYCSl~C~k~H   45 (59)
T 1x4s_A           12 GPCGFCPAGEVQPARYTCPRCN-APYCSLRCYRTH   45 (59)
T ss_dssp             EEECSSCTTCCEEECEECTTTC-CEESSHHHHHHH
T ss_pred             CcCcCCCCCcCCCccccCcCCC-CCccChHHHHHH
Confidence            47999984    5799999998 999999999964

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*

Probab=95.28  E-value=0.015  Score=34.14  Aligned_cols=35  Identities=20%  Similarity=0.140  Sum_probs=27.7

Q ss_pred             CccccccccccceEEEcCCCCCCcEEEeeCCceEcc
Q psy14482         44 PMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGP   79 (95)
Q Consensus        44 ~i~~~~~~~~gR~~va~r~i~~geii~~E~p~~~~p   79 (95)
                      .+++..++..|++++|+++|++|++|. |-+..+.+
T Consensus         5 ~~~v~~s~~~G~GvfA~~~I~~G~~I~-ey~g~vi~   39 (119)
T 1n3j_A            5 RVIVKKSPLGGYGVFARKSFEKGELVE-ECLCIVRH   39 (119)
T ss_dssp             SEEEECSCSSCCEEEECCCBCSCEEEC-CCCCEEEC
T ss_pred             CEEEEECCCceeEEEECCcCCCCCEEE-EeeEEEEC
Confidence            456677778899999999999999986 66555444

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}

Probab=94.09  E-value=0.015  Score=30.64  Aligned_cols=14  Identities=14%  Similarity=0.002  Sum_probs=0.9

Q ss_pred             CCCCCCcEEEeeCC
Q psy14482         61 RSIKAGEVVLREPP   74 (95)
Q Consensus        61 r~i~~geii~~E~p   74 (95)
                      ++|++||+||.|.|
T Consensus         2 ~~~~~G~~il~~~~   15 (64)
T 2odd_A            2 NLYFQGENLYFQGD   15 (64)
T ss_dssp             -------------C
T ss_pred             CcCCCCCEEeeCCC
Confidence            57899999999998

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*

Probab=93.64  E-value=0.095  Score=32.24  Aligned_cols=39  Identities=21%  Similarity=0.135  Sum_probs=31.7

Q ss_pred             ccccCCccccccccccceEEEcCCCCCCcEEEeeCCceE
Q psy14482         39 KSHCRPMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQ   77 (95)
Q Consensus        39 k~~C~~i~~~~~~~~gR~~va~r~i~~geii~~E~p~~~   77 (95)
                      +....++++...+..|++++|+++|++|++|..-...++
T Consensus        26 ~g~~~~l~v~~~~~kG~Gl~A~~~I~~G~~I~ey~Gevi   64 (166)
T 3f9x_A           26 SGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLI   64 (166)
T ss_dssp             HTCCTTEEEEEETTTEEEEEESSCBCTTCEEEECCSEEE
T ss_pred             cCCccCeEEEECCCceeEEEECCCcCCCCEEEEeeceEc
Confidence            345667888888899999999999999999976665554

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}

Probab=93.49  E-value=0.042  Score=35.77  Aligned_cols=36  Identities=14%  Similarity=0.096  Sum_probs=29.8

Q ss_pred             CccccccccccceEEEcCCCCCCcEEEeeCCceEcc
Q psy14482         44 PMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGP   79 (95)
Q Consensus        44 ~i~~~~~~~~gR~~va~r~i~~geii~~E~p~~~~p   79 (95)
                      .+++..++..|++++|+++|++|++|....+.++..
T Consensus        75 ~lev~~t~~kG~Gl~A~~~I~~G~~I~ey~Gevi~~  110 (222)
T 3ope_A           75 CLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSE  110 (222)
T ss_dssp             CCEEEECTTSSEEEECSSCBCTTCEEEECCSEEECH
T ss_pred             cEEEEEcCCCceEEEECceECCCCEEEEecceecCH
Confidence            467777788999999999999999998777766544

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}

Probab=92.65  E-value=0.056  Score=35.48  Aligned_cols=36  Identities=17%  Similarity=0.064  Sum_probs=28.7

Q ss_pred             CCccccccccccceEEEcCCCCCCcEEEeeCCceEc
Q psy14482         43 RPMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQG   78 (95)
Q Consensus        43 ~~i~~~~~~~~gR~~va~r~i~~geii~~E~p~~~~   78 (95)
                      ..+++..++..|++++|+++|++|++|..-...++.
T Consensus        92 ~~lev~~t~~kG~Gl~A~~~I~~G~~I~ey~Gevi~  127 (232)
T 3ooi_A           92 PEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELID  127 (232)
T ss_dssp             CCEEEEECSSSSEEEEESSCBCTTCEEEECCEEEEC
T ss_pred             ccEEEEEcCCceeEEEECceecCCceeeEeeeeccC
Confidence            456777788899999999999999999665555443

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*

Probab=90.07  E-value=0.19  Score=34.05  Aligned_cols=36  Identities=14%  Similarity=0.111  Sum_probs=28.1

Q ss_pred             CCccccccccccceEEEcCCCCCCcEEEeeCCceEc
Q psy14482         43 RPMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQG   78 (95)
Q Consensus        43 ~~i~~~~~~~~gR~~va~r~i~~geii~~E~p~~~~   78 (95)
                      ..+++..++..|++++|.++|++|++|..-...++.
T Consensus       147 ~~l~v~~t~~kG~Gv~A~~~I~~G~~I~eY~Gevi~  182 (287)
T 3hna_A          147 ARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELIS  182 (287)
T ss_dssp             SCEEEEECSSSSEEEEESSCBCTTCEEEEECEEEEE
T ss_pred             ccEEEEEcCCCceEEEeCcccCCCCEEEEeeeEEcc
Confidence            345666778899999999999999999665555543

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}

Probab=89.03  E-value=0.29  Score=35.51  Aligned_cols=40  Identities=25%  Similarity=0.339  Sum_probs=29.3

Q ss_pred             HHhhhhc-cccccCCccccccccccceEEEcCCCCCCcEEE
Q psy14482         31 QKIHWKK-HKSHCRPMKLCEDKVLGRYYIASRSIKAGEVVL   70 (95)
Q Consensus        31 q~~~w~~-Hk~~C~~i~~~~~~~~gR~~va~r~i~~geii~   70 (95)
                      .-..|-. +-.....+++...+..||+++|+++|++||+|+
T Consensus        80 ~ll~W~~~~G~~~~~v~i~~~~~~GrGl~A~~dI~~ge~ll  120 (497)
T 3smt_A           80 DLMKWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELFL  120 (497)
T ss_dssp             HHHHHHHHTTCCCTTEEEEEETTTEEEEEESSCBCTTCEEE
T ss_pred             HHHHHHHHCCCCccceEEEEcCCCccEEEEcccCCCCCEEE
Confidence            3457776 333344566666677899999999999999875

>1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.93  E-value=0.24  Score=27.18  Aligned_cols=21  Identities=14%  Similarity=0.148  Sum_probs=17.6

Q ss_pred             cccceEEEcCCCCCCcEEEee
Q psy14482         52 VLGRYYIASRSIKAGEVVLRE   72 (95)
Q Consensus        52 ~~gR~~va~r~i~~geii~~E   72 (95)
                      ..+|+++|+++|++||+|-.|
T Consensus         4 ~~rrslvA~rdI~~Gevit~~   24 (79)
T 1wvo_A            4 GSSGSVVAKVKIPEGTILTMD   24 (79)
T ss_dssp             CCCCEEEESSCBCTTCBCCGG
T ss_pred             cccEEEEEeCccCCCCCcCHH
Confidence            468999999999999988443

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*

Probab=87.71  E-value=0.57  Score=29.82  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=25.9

Q ss_pred             CccccccccccceEEEcCCCCCCcEEEeeCCceE
Q psy14482         44 PMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQ   77 (95)
Q Consensus        44 ~i~~~~~~~~gR~~va~r~i~~geii~~E~p~~~   77 (95)
                      .+++..++..|++++|.++|++|++|..=..-++
T Consensus        53 ~l~V~~s~~~G~GlfA~~~I~~G~~I~EY~Gevi   86 (192)
T 2w5y_A           53 AVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVI   86 (192)
T ss_dssp             HEEEEECSSSSEEEEESSCBCTTCEEEECCSEEE
T ss_pred             cEEEEEcCCceeEEEECcccCCCCEEEEeeeeEe
Confidence            3556667778999999999999999974444443

>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9

Probab=83.65  E-value=0.73  Score=24.70  Aligned_cols=33  Identities=21%  Similarity=0.350  Sum_probs=22.2

Q ss_pred             CcCcccCccccCCCCCCCceeecCHHHHHhhhhc
Q psy14482          4 NICGLCGETAKQKCSGCQLIYYCCREHQKIHWKK   37 (95)
Q Consensus         4 ~~C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~   37 (95)
                      ..|..|+++..-+=. =..+.|||+.|+.+|--.
T Consensus        10 ~~CP~Cgkp~~W~~~-~~~rPFCSeRCr~iDLg~   42 (68)
T 1lv3_A           10 VNCPTCGKTVVWGEI-SPFRPFCSKRCQLIDLGE   42 (68)
T ss_dssp             EECTTTCCEEECSSS-SSCCSSSSHHHHHHHHSC
T ss_pred             CcCCCCCCccccccc-CCCCcccCHHHHhhhHHH
Confidence            468888887531111 224679999999998654

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}

Probab=81.41  E-value=0.96  Score=30.56  Aligned_cols=28  Identities=14%  Similarity=0.056  Sum_probs=23.5

Q ss_pred             CCccccccccccceEEEcCCCCCCcEEE
Q psy14482         43 RPMKLCEDKVLGRYYIASRSIKAGEVVL   70 (95)
Q Consensus        43 ~~i~~~~~~~~gR~~va~r~i~~geii~   70 (95)
                      ..+++..++..|.+++|.++|++|++|.
T Consensus       126 ~~l~V~~s~~~G~Gl~A~~~I~~G~~I~  153 (290)
T 3bo5_A          126 FHFQVFKTHKKGWGLRTLEFIPKGRFVC  153 (290)
T ss_dssp             SCEEEEECSSSSEEEEESSCBCTTCEEE
T ss_pred             ccEEEEEcCCCcceEeECCccCCCCEEE
Confidence            3456667778899999999999999885

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A

Probab=81.00  E-value=1.4  Score=29.89  Aligned_cols=29  Identities=21%  Similarity=0.202  Sum_probs=23.5

Q ss_pred             CCccccccccccceEEEcCCCCCCcEEEe
Q psy14482         43 RPMKLCEDKVLGRYYIASRSIKAGEVVLR   71 (95)
Q Consensus        43 ~~i~~~~~~~~gR~~va~r~i~~geii~~   71 (95)
                      ..+++..++..|.++.|.++|++|++|..
T Consensus       137 ~~l~v~~t~~~G~Gv~A~~~I~kG~~I~E  165 (299)
T 1mvh_A          137 LPLEIFKTKEKGWGVRSLRFAPAGTFITC  165 (299)
T ss_dssp             SCEEEEECSSSSEEEEESSCBCTTCEEEE
T ss_pred             ccEEEEEcCCCcceEeeCceeCCCCEEEE
Confidence            34566666788999999999999998854

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*

Probab=80.61  E-value=1.9  Score=28.74  Aligned_cols=33  Identities=9%  Similarity=0.044  Sum_probs=24.0

Q ss_pred             ccccccccc--cceEEEcCCCCCCcEEEeeCCceE
Q psy14482         45 MKLCEDKVL--GRYYIASRSIKAGEVVLREPPLVQ   77 (95)
Q Consensus        45 i~~~~~~~~--gR~~va~r~i~~geii~~E~p~~~   77 (95)
                      +.+..+...  |++++|.++|++|++|..-...++
T Consensus       111 ~~v~~S~i~~kG~GvfA~~~I~~G~~I~eY~Gevi  145 (261)
T 2f69_A          111 VYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRI  145 (261)
T ss_dssp             EEEEECSSTTCCEEEEESSCBCTTCEEEEECCEEE
T ss_pred             EEEEecCCCCCceEEEECcccCCCCEEEEEeeEEe
Confidence            444555544  999999999999999965544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	95
d2dj8a1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	6e-09
d2jw6a1	38	g.85.1.1 (A:503-540) Zinc finger MYND domain-conta	9e-09
d2dana1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	3e-08

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (107), Expect = 6e-09
 Identities = 15/37 (40%), Positives = 17/37 (45%)

Query: 6  CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
          C  CG  A + CSGC    YC    Q   W+KH   C
Sbjct: 11 CWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 47

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 9e-09
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 6  CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
          C  CG  A  +C+GC  + YC    Q+  WK H+  C
Sbjct: 2  CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHIC 38

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 3e-08
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query: 6  CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
          C  C   A ++CS CQ  +YCCRE Q  HW+KH   C
Sbjct: 11 CAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d2jw6a1	38	Zinc finger MYND domain-containing protein 2, MTG8	99.67
d2dj8a1	47	Zinc finger MYND domain-containing protein 2, MTG8	99.66
d2dana1	47	Zinc finger MYND domain-containing protein 10, ZMY	99.65
d2h2ja2	261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	95.18
d1x4sa1	46	Zinc finger HIT domain containing protein 2, ZNHIT	94.6
d2g46a1	119	Viral histone H3 Lysine 27 Methyltransferase {Para	94.12
d1ml9a_	284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	88.45
d2f69a2	171	Histone H3 K4-specific methyltransferase SET7/9 ca	85.76
d1mvha_	269	SET domain of Clr4 {Fission yeast (Schizosaccharom	84.92

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-17  Score=81.11  Aligned_cols=38  Identities=37%  Similarity=0.949  Sum_probs=36.1

Q ss_pred             cCcccCccccCCCCCCCceeecCHHHHHhhhhcccccc
Q psy14482          5 ICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC   42 (95)
Q Consensus         5 ~C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~Hk~~C   42 (95)
                      .|.+|+++++++|++|+.++|||++||+.||+.||.+|
T Consensus         1 sC~~C~~~~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C   38 (38)
T d2jw6a1           1 SCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHIC   38 (38)
T ss_dssp             CCSSSSSSCSEECTTTCSSEESSHHHHHHHTTTGGGTT
T ss_pred             CccccCccccccCCCCCCEeeCCHHHHHHHHHHHhhhC
Confidence            38899999999999999999999999999999999987

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.5e-17  Score=83.45  Aligned_cols=41  Identities=37%  Similarity=0.818  Sum_probs=38.4

Q ss_pred             CCCcCcccCccccCCCCCCCceeecCHHHHHhhhhcccccc
Q psy14482          2 FDNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC   42 (95)
Q Consensus         2 ~~~~C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~Hk~~C   42 (95)
                      ....|+.|+++++++|++|+.++|||++||+.||+.||.+|
T Consensus         7 ~~~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~dW~~Hk~~C   47 (47)
T d2dj8a1           7 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHIC   47 (47)
T ss_dssp             CSCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHHHHTTTS
T ss_pred             CCCcCCCCCccccccCCCCCCeeeCCHHHHHHHHHHHhhhC
Confidence            35689999999999999999999999999999999999987

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.5e-17  Score=83.35  Aligned_cols=40  Identities=45%  Similarity=1.080  Sum_probs=37.5

Q ss_pred             CCcCcccCccccCCCCCCCceeecCHHHHHhhhhcccccc
Q psy14482          3 DNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC   42 (95)
Q Consensus         3 ~~~C~~C~~~~~~~C~~c~~~~ycs~~cq~~~w~~Hk~~C   42 (95)
                      .+.|+.|++++.++|++|+.++|||++||+.||+.||..|
T Consensus         8 ~~~C~~Cg~~~~~~Cs~C~~~~YCs~~CQ~~dW~~Hk~~C   47 (47)
T d2dana1           8 RPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC   47 (47)
T ss_dssp             CCCCSSSCCCCCEECTTTSCSEESSHHHHHHTHHHHTTTC
T ss_pred             CCcCcCCCChhhccCCCCCCEeeCCHHHHHHHHHHHhhhC
Confidence            3469999999999999999999999999999999999887

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.18  E-value=0.0043  Score=38.91  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.0

Q ss_pred             cccccceEEEcCCCCCCcEEEeeCC
Q psy14482         50 DKVLGRYYIASRSIKAGEVVLREPP   74 (95)
Q Consensus        50 ~~~~gR~~va~r~i~~geii~~E~p   74 (95)
                      ....||+++|+++|++||+|+...+
T Consensus        28 ~~~~GrGl~AtrdI~~Ge~il~vP~   52 (261)
T d2h2ja2          28 VVTEGLGLVALKDISRNDVILQVPK   52 (261)
T ss_dssp             EETTEEEEECSSCCCTTCEEEEEEG
T ss_pred             CCCceeEEEECCcCCCCCEEEEeCh
Confidence            4456999999999999999987643

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.013  Score=28.08  Aligned_cols=30  Identities=23%  Similarity=0.565  Sum_probs=25.3

Q ss_pred             CcCcccCcc-ccCCCCCCCceeecCHHHHHhh
Q psy14482          4 NICGLCGET-AKQKCSGCQLIYYCCREHQKIH   34 (95)
Q Consensus         4 ~~C~~C~~~-~~~~C~~c~~~~ycs~~cq~~~   34 (95)
                      ..|.+|... +..+|.+|. +.|||-+|-+.|
T Consensus         8 ~lC~vC~~~~~KY~CP~C~-~~yCSL~CyK~H   38 (46)
T d1x4sa1           8 GFCPAGEVQPARYTCPRCN-APYCSLRCYRTH   38 (46)
T ss_dssp             CSSCTTCCEEECEECTTTC-CEESSHHHHHHH
T ss_pred             ccChhhhCccccccCCCCC-CceechHHHhhh
Confidence            368889876 588999995 999999999875

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Viral histone H3 Lysine 27 Methyltransferase
domain: Viral histone H3 Lysine 27 Methyltransferase
species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

Probab=94.12  E-value=0.016  Score=32.49  Aligned_cols=32  Identities=19%  Similarity=0.138  Sum_probs=25.6

Q ss_pred             CccccccccccceEEEcCCCCCCcEEEeeCCc
Q psy14482         44 PMKLCEDKVLGRYYIASRSIKAGEVVLREPPL   75 (95)
Q Consensus        44 ~i~~~~~~~~gR~~va~r~i~~geii~~E~p~   75 (95)
                      .+++..++..|++++|+++|++|++|..-..+
T Consensus         5 ~v~v~~s~~~G~GvfA~~~i~~g~~i~~~~g~   36 (119)
T d2g46a1           5 RVIVKKSPLGGYGVFARKSFEKGELVEECLCI   36 (119)
T ss_dssp             SCEECCCSSCSSCEEECSCBCTTCCCEEEECE
T ss_pred             cEEEEEcCCCceEEEECchhhCCCEEecccEE
Confidence            45677778889999999999999988654433

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=88.45  E-value=0.19  Score=32.12  Aligned_cols=35  Identities=23%  Similarity=0.190  Sum_probs=27.7

Q ss_pred             CccccccccccceEEEcCCCCCCcEEEeeCCceEc
Q psy14482         44 PMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQG   78 (95)
Q Consensus        44 ~i~~~~~~~~gR~~va~r~i~~geii~~E~p~~~~   78 (95)
                      .+++..++..|++++|.++|++|++|..-.+-++.
T Consensus       126 ~lev~kt~~kG~Gv~a~~~I~kGt~I~eY~Gevi~  160 (284)
T d1ml9a_         126 PLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIIT  160 (284)
T ss_dssp             CEEEEECSSSCEEEECSSCBCTTCEEEECCCEEEC
T ss_pred             CEEEEEcCCCceEEeeCCCcCCCCEEEEecCcccC
Confidence            35666777889999999999999999765655544

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.76  E-value=0.42  Score=28.17  Aligned_cols=27  Identities=7%  Similarity=-0.032  Sum_probs=21.5

Q ss_pred             ccccceEEEcCCCCCCcEEEeeCCceE
Q psy14482         51 KVLGRYYIASRSIKAGEVVLREPPLVQ   77 (95)
Q Consensus        51 ~~~gR~~va~r~i~~geii~~E~p~~~   77 (95)
                      +..|++++|.++|+.|++|..-...++
T Consensus        31 p~~G~GlFA~~~I~kG~~I~~Y~G~~i   57 (171)
T d2f69a2          31 SSAGEGLFSKVAVGPNTVMSFYNGVRI   57 (171)
T ss_dssp             TTCCEEEEESSCBCTTCEEEEECCEEE
T ss_pred             CCCceehccCcccCCCCEEEEeeeEEE
Confidence            456999999999999999976555444

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=84.92  E-value=0.55  Score=29.79  Aligned_cols=57  Identities=18%  Similarity=0.088  Sum_probs=35.9

Q ss_pred             ceeecCHHHHHhhhhc----cccccCCccccccccccceEEEcCCCCCCcEEEeeCCceEc
Q psy14482         22 LIYYCCREHQKIHWKK----HKSHCRPMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQG   78 (95)
Q Consensus        22 ~~~ycs~~cq~~~w~~----Hk~~C~~i~~~~~~~~gR~~va~r~i~~geii~~E~p~~~~   78 (95)
                      .++.|+..|.-...=.    -+..-..+++..++..|+++.|.++|++|++|..-..-++.
T Consensus       111 ~i~EC~~~C~C~~~C~Nr~~q~g~~~~leV~~t~~~G~GvfA~~~I~kGt~I~eY~Gevi~  171 (269)
T d1mvha_         111 VIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVIT  171 (269)
T ss_dssp             EEECCCTTSCSCTTCTTCTGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEECCCEEEE
T ss_pred             eEEECCCCCCCCCCCCCeecCCCCccCEEEEEcCCCCeEEEeCcccCCCceEEEecceEEc
Confidence            3466776665421100    11223345666677789999999999999999665555543