Psyllid ID: psy14493
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 318 | 2.2.26 [Sep-21-2011] | |||||||
| Q473D1 | 323 | Acetyl-coenzyme A carboxy | yes | N/A | 0.849 | 0.835 | 0.714 | 1e-115 | |
| Q1LPF3 | 323 | Acetyl-coenzyme A carboxy | yes | N/A | 0.849 | 0.835 | 0.711 | 1e-115 | |
| B3R4D3 | 323 | Acetyl-coenzyme A carboxy | yes | N/A | 0.849 | 0.835 | 0.714 | 1e-115 | |
| Q0KCA7 | 323 | Acetyl-coenzyme A carboxy | yes | N/A | 0.849 | 0.835 | 0.714 | 1e-114 | |
| B2U9Q0 | 322 | Acetyl-coenzyme A carboxy | yes | N/A | 0.849 | 0.838 | 0.7 | 1e-113 | |
| A1K3X7 | 321 | Acetyl-coenzyme A carboxy | yes | N/A | 0.845 | 0.838 | 0.665 | 1e-113 | |
| Q2KX40 | 321 | Acetyl-coenzyme A carboxy | yes | N/A | 0.849 | 0.841 | 0.681 | 1e-113 | |
| Q5P2J0 | 322 | Acetyl-coenzyme A carboxy | yes | N/A | 0.842 | 0.832 | 0.675 | 1e-113 | |
| Q8Y075 | 322 | Acetyl-coenzyme A carboxy | yes | N/A | 0.849 | 0.838 | 0.696 | 1e-112 | |
| Q13X62 | 323 | Acetyl-coenzyme A carboxy | yes | N/A | 0.849 | 0.835 | 0.7 | 1e-112 |
| >sp|Q473D1|ACCA_CUPPJ Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=accA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/270 (71%), Positives = 234/270 (86%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQI 60
MK FL+FE+PI +LE KIE+LR +Q S +D S+EI+ L K +LT++IY+ LTPWQ+
Sbjct: 1 MKTTFLDFEQPIAELEAKIEELRFVQDDSAVDISEEISRLAGKSQQLTKDIYANLTPWQV 60
Query: 61 SQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
+QIARHP+RPYTLDY+REIFTD HELHGDR + DDLSI+G LAR NG+SCMVIGHQKGR+
Sbjct: 61 AQIARHPQRPYTLDYVREIFTDFHELHGDRTFADDLSIVGGLARFNGQSCMVIGHQKGRD 120
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
ER +RNFGM KPEGYRKA RLM +A+KF LPIFTF+DTPGAFPGIDAEERGQSEAIGH
Sbjct: 121 TKERAMRNFGMPKPEGYRKAKRLMELADKFGLPIFTFVDTPGAFPGIDAEERGQSEAIGH 180
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240
++YVM+ LKVPLI+TIIGEGGSGGALAIAV D+ MLQ+A Y+VISPEGCASILWKT+++
Sbjct: 181 NLYVMAGLKVPLIATIIGEGGSGGALAIAVGDVVQMLQFATYAVISPEGCASILWKTAEK 240
Query: 241 ASDAAEALGLTADKLKSIGLINKIIKEPIA 270
A +AAEALGLTA +LK++GLI+KI+ EP+
Sbjct: 241 APEAAEALGLTAHRLKALGLIDKIVSEPLG 270
|
Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198) EC: 6EC: .EC: 4EC: .EC: 1EC: .EC: 2 |
| >sp|Q1LPF3|ACCA_RALME Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=accA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 192/270 (71%), Positives = 235/270 (87%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQI 60
MK FL+FE+PI +LE KIE+LR +Q S +D S+EI+ L K +LT++IY+ LTPWQ+
Sbjct: 1 MKTTFLDFEQPIAELEAKIEELRFVQDDSAVDISEEISRLAGKSQQLTKDIYANLTPWQV 60
Query: 61 SQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
+QIARHP+RPYTLDY+REIFTD HELHGDR + DDLSI+G LAR NG++CMVIGHQKGR+
Sbjct: 61 AQIARHPQRPYTLDYVREIFTDFHELHGDRAFADDLSIVGGLARFNGQACMVIGHQKGRD 120
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
ER +RNFGM+KPEGYRKA RLM +A+KF LPIFTF+DTPGAFPGIDAEERGQSEAIGH
Sbjct: 121 TKERALRNFGMSKPEGYRKAKRLMELADKFGLPIFTFVDTPGAFPGIDAEERGQSEAIGH 180
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240
++YVM+ LKVPLI+TIIGEGGSGGALAIAV D+ MLQ+A Y+VISPEGCASILWKT+++
Sbjct: 181 NLYVMAGLKVPLIATIIGEGGSGGALAIAVGDVVQMLQFATYAVISPEGCASILWKTAEK 240
Query: 241 ASDAAEALGLTADKLKSIGLINKIIKEPIA 270
A +AAEALGLTA +LK++GLI+KI+ EP+
Sbjct: 241 APEAAEALGLTAHRLKALGLIDKIVSEPLG 270
|
Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) (taxid: 266264) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|B3R4D3|ACCA_CUPTR Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=accA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/270 (71%), Positives = 234/270 (86%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQI 60
MK FL+FE+PI +LE KIE+LR +Q S +D S+EI+ L K +LT++IY+ LTPWQ+
Sbjct: 1 MKTTFLDFEQPIAELEAKIEELRFVQDDSAVDISEEISRLAGKSQQLTKDIYANLTPWQV 60
Query: 61 SQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
+QIARHP+RPYTLDY+REIFTD HELHGDR + DDLSIIG LAR NG+SCMVIGHQKGR+
Sbjct: 61 AQIARHPQRPYTLDYVREIFTDFHELHGDRTFADDLSIIGGLARFNGQSCMVIGHQKGRD 120
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
ER +RNFGM KPEGYRKA RLM +A+KF LPIFTF+DTPGAFPGIDAEERGQSEAIGH
Sbjct: 121 TKERAMRNFGMPKPEGYRKAKRLMELADKFGLPIFTFVDTPGAFPGIDAEERGQSEAIGH 180
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240
++YVM+ L+VPLI+TIIGEGGSGGALAIAV D+ MLQ+A Y+VISPEGCASILWKT+++
Sbjct: 181 NLYVMAGLRVPLIATIIGEGGSGGALAIAVGDVVQMLQFATYAVISPEGCASILWKTAEK 240
Query: 241 ASDAAEALGLTADKLKSIGLINKIIKEPIA 270
A +AAEALGLTA +LK++GLI+KI+ EP+
Sbjct: 241 APEAAEALGLTAHRLKALGLIDKIVSEPLG 270
|
Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. Cupriavidus taiwanensis (strain R1 / LMG 19424) (taxid: 164546) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q0KCA7|ACCA_CUPNH Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=accA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/270 (71%), Positives = 234/270 (86%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQI 60
MK FL+FE+PI +LE KIE+LR +Q S +D S+EI+ L K +LT++IY+ LTPWQ+
Sbjct: 1 MKTTFLDFEQPIAELEAKIEELRFVQDDSAVDISEEISRLAGKSQQLTKDIYANLTPWQV 60
Query: 61 SQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
+QIARHP+RPYTLDY+REIFTD HELHGDR + DDLSIIG LAR NG++CMVIGHQKGR+
Sbjct: 61 AQIARHPQRPYTLDYVREIFTDFHELHGDRTFADDLSIIGGLARFNGQACMVIGHQKGRD 120
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
ER +RNFGM KPEGYRKA RLM +A+KF LPIFTF+DTPGAFPGIDAEERGQSEAIGH
Sbjct: 121 TKERAMRNFGMPKPEGYRKAKRLMELADKFGLPIFTFVDTPGAFPGIDAEERGQSEAIGH 180
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240
++YVM+ LKVPLI+TIIGEGGSGGALAIAV D+ MLQ+A Y+VISPEGCASILWKT+++
Sbjct: 181 NLYVMAGLKVPLIATIIGEGGSGGALAIAVGDVVQMLQFATYAVISPEGCASILWKTAEK 240
Query: 241 ASDAAEALGLTADKLKSIGLINKIIKEPIA 270
A +AAEALGLTA +LK++GLI+KI+ EP+
Sbjct: 241 APEAAEALGLTAHRLKALGLIDKIVSEPLG 270
|
Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|B2U9Q0|ACCA_RALPJ Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha OS=Ralstonia pickettii (strain 12J) GN=accA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 189/270 (70%), Positives = 234/270 (86%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQI 60
MK FL FE+PI +LE KIE+LR +Q S +D S+EI+ L K +LT+++Y+ LTPWQ+
Sbjct: 1 MKTTFLEFEQPIAELEAKIEELRFVQDDSAVDISEEISRLASKSQQLTKDLYANLTPWQV 60
Query: 61 SQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
+QIARHP+RPYTLDY+REIFTD HELHGDR + DDLSI+G LAR NG++CMVIGHQKGR+
Sbjct: 61 AQIARHPQRPYTLDYVREIFTDFHELHGDRTFADDLSIVGGLARFNGQACMVIGHQKGRD 120
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
ER +RNFGM+KPEGYRKA RLM +A+KF LPIFTF+DTPGAFPGIDAEERGQSEAIGH
Sbjct: 121 TKERALRNFGMSKPEGYRKAKRLMELADKFGLPIFTFVDTPGAFPGIDAEERGQSEAIGH 180
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240
+++VM+ LKVPLI+TIIGEGGSGGALAIA+ D +MLQ+A Y+VISPEGCASILWKT+++
Sbjct: 181 NLFVMAGLKVPLIATIIGEGGSGGALAIAMGDSVIMLQFATYAVISPEGCASILWKTAEK 240
Query: 241 ASDAAEALGLTADKLKSIGLINKIIKEPIA 270
A +AAEALGLTA +LK++GLI+KI+ EP+
Sbjct: 241 APEAAEALGLTAHRLKALGLIDKIVNEPLG 270
|
Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. Ralstonia pickettii (strain 12J) (taxid: 402626) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|A1K3X7|ACCA_AZOSB Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha OS=Azoarcus sp. (strain BH72) GN=accA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 408 bits (1048), Expect = e-113, Method: Compositional matrix adjust.
Identities = 179/269 (66%), Positives = 231/269 (85%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQI 60
MK FL+FE+PI +LE+KIE+LR +Q S +D S+EI L K LT+++Y+KLTPWQI
Sbjct: 1 MKTTFLDFEQPIAELEEKIEQLRFVQDDSAVDISEEIARLEVKSQALTKDLYAKLTPWQI 60
Query: 61 SQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
+Q+ARHP+RPYTLDY++ IFTD ELHGDR Y DD +I+G LAR NG+SC++IGHQKGR+
Sbjct: 61 AQVARHPQRPYTLDYVQHIFTDFEELHGDRAYADDKAIVGGLARFNGQSCVIIGHQKGRD 120
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
E+I RNFGM +PEGYRKA+RLM +AEKF LP+FTF+DTPGA+PGI AEERGQSEAIGH
Sbjct: 121 TKEKIARNFGMPRPEGYRKAMRLMKLAEKFGLPVFTFVDTPGAYPGIGAEERGQSEAIGH 180
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240
++YVM++LKVPLI T+IGEGGSGGALAIAV D +M+QY+ YSVISPEGCASILWK++++
Sbjct: 181 NLYVMAELKVPLICTVIGEGGSGGALAIAVGDQVMMMQYSTYSVISPEGCASILWKSAEK 240
Query: 241 ASDAAEALGLTADKLKSIGLINKIIKEPI 269
AS+AAE +G+TA +LKS+GL++K++ EP+
Sbjct: 241 ASEAAETMGITAARLKSLGLVDKVVNEPV 269
|
Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. Azoarcus sp. (strain BH72) (taxid: 62928) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q2KX40|ACCA_BORA1 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha OS=Bordetella avium (strain 197N) GN=accA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 184/270 (68%), Positives = 223/270 (82%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQI 60
M+N FL FE+P+ +LE KIE+LR +Q S +D S EI L +K L +EIY KLTPWQ
Sbjct: 1 MRNTFLEFEQPLAELENKIEQLRYVQADSAVDISDEIGRLQQKSQTLAKEIYGKLTPWQT 60
Query: 61 SQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
+ +ARHP+RPYTLDY+REIFTD HELHGDR Y DD SI+G LAR NG+SCMVIGHQKGR+
Sbjct: 61 ALVARHPQRPYTLDYVREIFTDFHELHGDRMYADDQSIVGGLARFNGQSCMVIGHQKGRD 120
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
ER RNFGM +PEGYRKA RLM +AEKF LPIFTF+DTPGA+PGI AEERGQSEAIGH
Sbjct: 121 TKERAARNFGMPRPEGYRKAQRLMRLAEKFKLPIFTFVDTPGAYPGIGAEERGQSEAIGH 180
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240
++YVM++LKVP+I TIIGEGGSGGALAIAV + LMLQY+ YSVISPEGCASILW+++ +
Sbjct: 181 NLYVMAELKVPVIVTIIGEGGSGGALAIAVGNAVLMLQYSTYSVISPEGCASILWRSADK 240
Query: 241 ASDAAEALGLTADKLKSIGLINKIIKEPIA 270
A +AAEAL +TA +LK +GLI++++ EPI
Sbjct: 241 APEAAEALAITAPRLKDLGLIDRVVNEPIG 270
|
Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. Bordetella avium (strain 197N) (taxid: 360910) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q5P2J0|ACCA_AROAE Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha OS=Aromatoleum aromaticum (strain EbN1) GN=accA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 407 bits (1046), Expect = e-113, Method: Compositional matrix adjust.
Identities = 181/268 (67%), Positives = 228/268 (85%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQI 60
MK FL+FE+P+ LE KIEKLR +Q S +D S+EI L K L++ +Y+KLTPWQI
Sbjct: 1 MKTTFLDFEQPVADLEAKIEKLRFVQDDSAVDISEEIARLEAKSQTLSKNLYAKLTPWQI 60
Query: 61 SQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
+Q++RHP+RPYTLDY R IFTD ELHGDR Y DD +I+G LAR NG+SC+VIGHQKGR+
Sbjct: 61 AQVSRHPQRPYTLDYARHIFTDFVELHGDRTYADDKAIVGGLARFNGQSCVVIGHQKGRD 120
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
E+I+RNFGM +PEGYRKA+RLM +AEKF LP+FTF+DTPGA+PGIDAEERGQSEAIG
Sbjct: 121 TKEKILRNFGMPRPEGYRKALRLMRLAEKFGLPVFTFVDTPGAYPGIDAEERGQSEAIGR 180
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240
++YVM++LKVP+I+TIIGEGGSGGALAIAV D +MLQYA YSVISPEGCASILWK++++
Sbjct: 181 NLYVMAELKVPIITTIIGEGGSGGALAIAVGDQVMMLQYATYSVISPEGCASILWKSAEK 240
Query: 241 ASDAAEALGLTADKLKSIGLINKIIKEP 268
AS+AAE +G+TA +LKS+GLI++++ EP
Sbjct: 241 ASEAAETMGITAARLKSLGLIDRVVNEP 268
|
Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. Aromatoleum aromaticum (strain EbN1) (taxid: 76114) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q8Y075|ACCA_RALSO Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha OS=Ralstonia solanacearum (strain GMI1000) GN=accA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 406 bits (1044), Expect = e-112, Method: Compositional matrix adjust.
Identities = 188/270 (69%), Positives = 233/270 (86%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQI 60
MK FL FE+PI +LE KIE+LR +Q S +D S+EI+ L K +LT+++Y+ L+PWQ+
Sbjct: 1 MKTTFLEFEQPIAELEAKIEELRFVQDDSAVDISEEISRLAAKSQQLTKDLYATLSPWQV 60
Query: 61 SQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
+QIARHP+RPYTLDY+REIFTD HELHGDR + DDLSI+G LAR NG+ CMVIGHQKGR+
Sbjct: 61 AQIARHPQRPYTLDYVREIFTDFHELHGDRTFADDLSIVGGLARFNGQPCMVIGHQKGRD 120
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
ER +RNFGM+KPEGYRKA RLM +A+KF LPIFTF+DTPGAFPGI+AEERGQSEAIGH
Sbjct: 121 TKERALRNFGMSKPEGYRKAKRLMELADKFGLPIFTFVDTPGAFPGIEAEERGQSEAIGH 180
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240
+++VM+ LKVPLI+TIIGEGGSGGALAIAV D +MLQ+A Y+VISPEGCASILWKT+++
Sbjct: 181 NLFVMAGLKVPLIATIIGEGGSGGALAIAVGDSVIMLQFATYAVISPEGCASILWKTAEK 240
Query: 241 ASDAAEALGLTADKLKSIGLINKIIKEPIA 270
A +AAEALGLTA +LK++GLI+KI+ EP+
Sbjct: 241 APEAAEALGLTAHRLKALGLIDKIVNEPLG 270
|
Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. Ralstonia solanacearum (strain GMI1000) (taxid: 267608) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q13X62|ACCA_BURXL Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha OS=Burkholderia xenovorans (strain LB400) GN=accA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/270 (70%), Positives = 230/270 (85%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQI 60
MK FL+FE+PI +LE KIE+LR +Q S +D S+EI L KK +LT+++Y+ LTPWQ+
Sbjct: 1 MKTTFLDFEQPIAELEAKIEELRFVQDDSAVDISEEIERLSKKSQQLTKDLYANLTPWQV 60
Query: 61 SQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
SQIARHP+RPYT DY+ E+FTD HELHGDRNY DDLSI+G LAR NG++CMVIGHQKGR+
Sbjct: 61 SQIARHPQRPYTFDYVNELFTDFHELHGDRNYADDLSIVGGLARFNGQACMVIGHQKGRD 120
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
ER +RNFGM +PEGYRKA RLM +AEKF LPIFTFIDTPGA+PGI AEERGQSEAIG
Sbjct: 121 TKERALRNFGMPRPEGYRKAERLMRLAEKFGLPIFTFIDTPGAYPGIGAEERGQSEAIGR 180
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240
++YVM++LK PLI+TIIGEGGSGGALAIAV D LMLQ++ YSVISPEGCASILWK++ +
Sbjct: 181 NLYVMAELKTPLIATIIGEGGSGGALAIAVGDSVLMLQFSTYSVISPEGCASILWKSAAK 240
Query: 241 ASDAAEALGLTADKLKSIGLINKIIKEPIA 270
A +AAEALGLTA +LK++GLI+KI+ EP+
Sbjct: 241 APEAAEALGLTAHRLKALGLIDKIVNEPLG 270
|
Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. Burkholderia xenovorans (strain LB400) (taxid: 266265) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 318 | ||||||
| 395761811 | 324 | acetyl-CoA carboxylase carboxyltransfera | 0.842 | 0.827 | 0.735 | 1e-120 | |
| 445496219 | 324 | acetyl-CoA carboxylase alpha subunit [Ja | 0.845 | 0.830 | 0.732 | 1e-120 | |
| 399018070 | 326 | acetyl-CoA carboxylase, carboxyl transfe | 0.833 | 0.812 | 0.750 | 1e-120 | |
| 329906073 | 324 | Acetyl-coenzyme A carboxyl transferase a | 0.842 | 0.827 | 0.738 | 1e-119 | |
| 134094513 | 324 | acetyl-CoA carboxylase carboxyltransfera | 0.845 | 0.830 | 0.736 | 1e-119 | |
| 152980630 | 324 | acetyl-CoA carboxylase carboxyltransfera | 0.845 | 0.830 | 0.732 | 1e-118 | |
| 427403814 | 325 | acetyl-coenzyme A carboxylase carboxyl t | 0.845 | 0.827 | 0.728 | 1e-118 | |
| 340787523 | 324 | acetyl-coenzyme A carboxyl transferase s | 0.845 | 0.830 | 0.721 | 1e-114 | |
| 398832799 | 326 | acetyl-CoA carboxylase, carboxyl transfe | 0.836 | 0.815 | 0.744 | 1e-114 | |
| 407939984 | 325 | acetyl-CoA carboxylase, carboxyl transfe | 0.842 | 0.824 | 0.694 | 1e-114 |
| >gi|395761811|ref|ZP_10442480.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha [Janthinobacterium lividum PAMC 25724] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 197/268 (73%), Positives = 238/268 (88%)
Query: 2 KNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQIS 61
K FLNFE+PI +L+ KIE+LR +Q S +D S+EI+ L KK +LT++IY+KLTPWQ++
Sbjct: 3 KTTFLNFEQPIAELDSKIEELRFVQDDSAVDISEEIDRLAKKSQQLTKDIYAKLTPWQVA 62
Query: 62 QIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV 121
QIARHP+RPYT+DY+ EIFTD HELHGDR+Y DDLS++G LAR NG+ CMVIGHQKGR+
Sbjct: 63 QIARHPQRPYTMDYVNEIFTDFHELHGDRSYADDLSVVGGLARFNGQPCMVIGHQKGRDT 122
Query: 122 NERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHS 181
ER +RNFGM KPEGYRKA+RLM +AEKFNLPIFTF+DTPGAFPGIDAEERGQSEAIGH+
Sbjct: 123 KERALRNFGMPKPEGYRKAMRLMKVAEKFNLPIFTFVDTPGAFPGIDAEERGQSEAIGHN 182
Query: 182 IYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241
+YVM++LKVPLI+TIIGEGGSGGALAIAV D LMLQY+ Y+VISPEGCASILWK+++RA
Sbjct: 183 LYVMAELKVPLIATIIGEGGSGGALAIAVGDAVLMLQYSTYAVISPEGCASILWKSAERA 242
Query: 242 SDAAEALGLTADKLKSIGLINKIIKEPI 269
SDAAEALGLTA +LK++GLI+KII EP+
Sbjct: 243 SDAAEALGLTAHRLKAMGLIDKIINEPL 270
|
Source: Janthinobacterium lividum PAMC 25724 Species: Janthinobacterium lividum Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|445496219|ref|ZP_21463263.1| acetyl-CoA carboxylase alpha subunit [Janthinobacterium sp. HH01] gi|444792380|gb|ELX13927.1| acetyl-CoA carboxylase alpha subunit [Janthinobacterium sp. HH01] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 197/269 (73%), Positives = 238/269 (88%)
Query: 2 KNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQIS 61
K FLNFE+PI +L+ KIE+LR +Q S +D S+EI+ L KK +LT++IY+KLTPWQ++
Sbjct: 3 KTTFLNFEQPIAELDGKIEELRFVQDDSAVDISEEIDRLAKKSQQLTKDIYAKLTPWQVA 62
Query: 62 QIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV 121
QIARHP+RPYT+DY+ EIFTD HELHGDR+Y DDLS++G LAR NG++CMVIGHQKGR+
Sbjct: 63 QIARHPQRPYTMDYVNEIFTDFHELHGDRSYADDLSVVGGLARFNGQACMVIGHQKGRDT 122
Query: 122 NERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHS 181
ER +RNFGM KPEGYRKA+RLM +AEKF +PIFTF+DTPGAFPGIDAEERGQSEAIGH+
Sbjct: 123 KERAMRNFGMPKPEGYRKAMRLMKLAEKFGIPIFTFVDTPGAFPGIDAEERGQSEAIGHN 182
Query: 182 IYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241
+YVM++LKVPLI+TIIGEGGSGGALAIAV D LMLQYA YSVISPEGCASILWKTS+RA
Sbjct: 183 LYVMAELKVPLIATIIGEGGSGGALAIAVGDAVLMLQYATYSVISPEGCASILWKTSERA 242
Query: 242 SDAAEALGLTADKLKSIGLINKIIKEPIA 270
+DAAEALGLTA +LK++GLI+KI+ EP+
Sbjct: 243 ADAAEALGLTAHRLKAMGLIDKIVTEPLG 271
|
Source: Janthinobacterium sp. HH01 Species: Janthinobacterium sp. HH01 Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|399018070|ref|ZP_10720256.1| acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Herbaspirillum sp. CF444] gi|398102035|gb|EJL92227.1| acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 199/265 (75%), Positives = 234/265 (88%)
Query: 5 FLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIA 64
FL FE+ I +L+ KIE+LR +Q S +D S+EI LVKK +LT++IY+KLTPWQ+SQIA
Sbjct: 8 FLGFEQAIAELDAKIEELRFVQDDSAVDISEEIERLVKKSQQLTKDIYAKLTPWQVSQIA 67
Query: 65 RHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNER 124
RHP+RPYT+DY+ EIFTD HELHGDR Y DDLSI+G LAR NG++CMVIGHQKGR+ ER
Sbjct: 68 RHPQRPYTMDYVNEIFTDFHELHGDRTYADDLSIVGGLARFNGQACMVIGHQKGRDTKER 127
Query: 125 IIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYV 184
+RNFGM KPEGYRKA+RLM +AEKFNLPIFTF+DTPGAFPGIDAEERGQSEAIGH++YV
Sbjct: 128 AMRNFGMPKPEGYRKAMRLMKVAEKFNLPIFTFVDTPGAFPGIDAEERGQSEAIGHNLYV 187
Query: 185 MSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRASDA 244
M++LKVPLI+TIIGEGGSGGALAIAV D LMLQYA YSVISPEGCASILWKT+ RASDA
Sbjct: 188 MAELKVPLIATIIGEGGSGGALAIAVGDSVLMLQYATYSVISPEGCASILWKTADRASDA 247
Query: 245 AEALGLTADKLKSIGLINKIIKEPI 269
AEALGLTA +LK++GLI+KI+ EP+
Sbjct: 248 AEALGLTAHRLKAMGLIDKIVNEPL 272
|
Source: Herbaspirillum sp. CF444 Species: Herbaspirillum sp. CF444 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|329906073|ref|ZP_08274356.1| Acetyl-coenzyme A carboxyl transferase alpha chain [Oxalobacteraceae bacterium IMCC9480] gi|327547348|gb|EGF32179.1| Acetyl-coenzyme A carboxyl transferase alpha chain [Oxalobacteraceae bacterium IMCC9480] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 198/268 (73%), Positives = 235/268 (87%)
Query: 2 KNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQIS 61
K FL+FE PI +L+ KIE+LR +Q S +D S+EI+ L KK +LT++IY+KLTPWQ+S
Sbjct: 3 KTTFLSFETPIAELDSKIEELRFVQDDSAVDISEEIDRLAKKSQQLTKDIYAKLTPWQVS 62
Query: 62 QIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV 121
QIARHP+RPYT+DY+ EIFTD HELHGDR+Y DDLSI+G LAR NG++CMVIGHQKGR+
Sbjct: 63 QIARHPQRPYTMDYVNEIFTDFHELHGDRSYADDLSIVGGLARFNGQACMVIGHQKGRDT 122
Query: 122 NERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHS 181
ER +RNFGM KPEGYRKA+RLM +AEKF LPIFTF+DTPGAFPGIDAEERGQSEAIGH+
Sbjct: 123 KERALRNFGMPKPEGYRKALRLMKVAEKFGLPIFTFVDTPGAFPGIDAEERGQSEAIGHN 182
Query: 182 IYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241
+Y M++LKVPLI+TIIGEGGSGGALAIAV D LMLQYA YSVISPEGCASILWKT++RA
Sbjct: 183 LYAMAELKVPLIATIIGEGGSGGALAIAVGDAVLMLQYATYSVISPEGCASILWKTAERA 242
Query: 242 SDAAEALGLTADKLKSIGLINKIIKEPI 269
SDAAEALGLTA +LK+I LI+KI+ EP+
Sbjct: 243 SDAAEALGLTAHRLKAINLIDKIVNEPL 270
|
Source: Oxalobacteraceae bacterium IMCC9480 Species: Oxalobacteraceae bacterium IMCC9480 Genus: Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134094513|ref|YP_001099588.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha [Herminiimonas arsenicoxydans] gi|133738416|emb|CAL61461.1| Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 198/269 (73%), Positives = 236/269 (87%)
Query: 2 KNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQIS 61
K FL FE+PI +L+ KIE+LR +Q S +D S+EI+ L KK +LT++IY+KLTPWQ+S
Sbjct: 3 KTTFLGFEQPIAELDSKIEELRFVQDDSAVDISEEIDRLSKKSQQLTKDIYAKLTPWQVS 62
Query: 62 QIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV 121
QIARHP+RPYT+DY+ EIFTD HELHGDR+Y DDLSI+G LAR NG CMVIGHQKGR+
Sbjct: 63 QIARHPQRPYTMDYVNEIFTDFHELHGDRSYADDLSIVGGLARFNGMPCMVIGHQKGRDT 122
Query: 122 NERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHS 181
ER +RNFGM KPEGYRKA+RLM +AEKFNLP+FTF+DTPGAFPGIDAEERGQSEAIGH+
Sbjct: 123 KERSLRNFGMPKPEGYRKAMRLMKLAEKFNLPVFTFVDTPGAFPGIDAEERGQSEAIGHN 182
Query: 182 IYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241
+YVM++LKVPLI+TIIGEGGSGGALAIAV D LMLQY+ YSVISPEGCASILWK+++RA
Sbjct: 183 LYVMAELKVPLIATIIGEGGSGGALAIAVGDAVLMLQYSTYSVISPEGCASILWKSAERA 242
Query: 242 SDAAEALGLTADKLKSIGLINKIIKEPIA 270
SDAAEALGLTA +LK++GLI+KII EP+
Sbjct: 243 SDAAEALGLTAHRLKAMGLIDKIINEPLG 271
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|152980630|ref|YP_001353796.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha [Janthinobacterium sp. Marseille] gi|151280707|gb|ABR89117.1| acetyl-CoA carboxylase carboxyl transferase subunit alpha [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 197/269 (73%), Positives = 235/269 (87%)
Query: 2 KNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQIS 61
K FL FE+PI +L+ KIE+LR +Q S +D S+EI+ L KK +LT++IY+KLTPWQ+S
Sbjct: 3 KTTFLGFEQPIAELDSKIEELRFVQDDSAVDISEEIDRLSKKSQQLTKDIYAKLTPWQVS 62
Query: 62 QIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV 121
QIARHP+RPYT+DY+ EIFTD HELHGDR+Y DDLSI+G LAR NG CMVIGHQKGR+
Sbjct: 63 QIARHPQRPYTMDYVNEIFTDFHELHGDRSYADDLSIVGGLARFNGMPCMVIGHQKGRDT 122
Query: 122 NERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHS 181
ER +RNFGM KPEGYRKA+RLM +AEKF LP+FTF+DTPGAFPGIDAEERGQSEAIGH+
Sbjct: 123 KERSMRNFGMPKPEGYRKAMRLMKLAEKFGLPVFTFVDTPGAFPGIDAEERGQSEAIGHN 182
Query: 182 IYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241
+YVM++LKVPLI+TIIGEGGSGGALAIAV D LMLQY+ YSVISPEGCASILWK+++RA
Sbjct: 183 LYVMAELKVPLIATIIGEGGSGGALAIAVGDAVLMLQYSTYSVISPEGCASILWKSAERA 242
Query: 242 SDAAEALGLTADKLKSIGLINKIIKEPIA 270
SDAAEALGLTA +LK++GLI+KII EP+
Sbjct: 243 SDAAEALGLTAHRLKAMGLIDKIINEPLG 271
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|427403814|ref|ZP_18894696.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [Massilia timonae CCUG 45783] gi|425717483|gb|EKU80441.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [Massilia timonae CCUG 45783] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 196/269 (72%), Positives = 234/269 (86%)
Query: 2 KNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQIS 61
K FLNFE+PI +L+ KIE+LR +Q S +D S+EI+ L KK +LT++IY+KLTPWQ+S
Sbjct: 3 KTTFLNFEQPIAELDSKIEELRFVQDDSAVDISEEIDRLDKKSQQLTKDIYAKLTPWQVS 62
Query: 62 QIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV 121
QIARHP+RPYT+DY+ IFTD HELHGDR + DD SIIG LAR NG+ CMVIGHQKGR+
Sbjct: 63 QIARHPQRPYTMDYVNAIFTDFHELHGDRTFADDQSIIGGLARFNGQPCMVIGHQKGRDT 122
Query: 122 NERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHS 181
ER +RNFGM KPEGYRKA+RLM +AEKF LPIFTF+DTPGAFPGIDAEERGQSEAIGH+
Sbjct: 123 KERAMRNFGMPKPEGYRKAMRLMKLAEKFGLPIFTFVDTPGAFPGIDAEERGQSEAIGHN 182
Query: 182 IYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241
+YVM++LKVPLI+TIIGEGGSGGALAIAV D LMLQY+ YSVISPEGCASILWKTS+RA
Sbjct: 183 LYVMAELKVPLIATIIGEGGSGGALAIAVGDAVLMLQYSTYSVISPEGCASILWKTSERA 242
Query: 242 SDAAEALGLTADKLKSIGLINKIIKEPIA 270
+DAAEALGLTA +LK++GL++KI+ EP+
Sbjct: 243 ADAAEALGLTAHRLKAMGLVDKIVTEPLG 271
|
Source: Massilia timonae CCUG 45783 Species: Massilia timonae Genus: Massilia Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|340787523|ref|YP_004752988.1| acetyl-coenzyme A carboxyl transferase subunit alpha [Collimonas fungivorans Ter331] gi|340552790|gb|AEK62165.1| Acetyl-coenzyme A carboxyl transferase alpha chain [Collimonas fungivorans Ter331] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/269 (72%), Positives = 234/269 (86%)
Query: 2 KNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQIS 61
K FL FE+PI +L+ KIE+LR +Q S +D S+EI+ L KK +LT++IY+KLTPWQ+S
Sbjct: 3 KTTFLGFEQPIAELDAKIEELRFVQDDSAVDISEEIDRLSKKSQQLTKDIYAKLTPWQVS 62
Query: 62 QIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV 121
QI+RHP+RPYT+DY+ EIFTD HELHGDR Y DD SI+G LAR NG++CMVIGHQKGR+
Sbjct: 63 QISRHPQRPYTMDYVNEIFTDFHELHGDRTYADDQSIVGGLARFNGQACMVIGHQKGRDT 122
Query: 122 NERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHS 181
ER +RNFGM KPEGYRKA+RLM +AEKF LPIFTF+DTPGAFPGIDAEERGQSEAIGH+
Sbjct: 123 KERALRNFGMPKPEGYRKALRLMKVAEKFGLPIFTFVDTPGAFPGIDAEERGQSEAIGHN 182
Query: 182 IYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241
+Y M++LKVPLI+TIIGEGGSGGALAIAV D LMLQYA YSVISPEGCASILWKT++RA
Sbjct: 183 LYAMAELKVPLIATIIGEGGSGGALAIAVGDAVLMLQYATYSVISPEGCASILWKTAERA 242
Query: 242 SDAAEALGLTADKLKSIGLINKIIKEPIA 270
+DAA+ALGLTA +LK++GLI+KI+ EP+
Sbjct: 243 ADAADALGLTAHRLKAVGLIDKIVSEPLG 271
|
Source: Collimonas fungivorans Ter331 Species: Collimonas fungivorans Genus: Collimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|398832799|ref|ZP_10590950.1| acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Herbaspirillum sp. YR522] gi|398222693|gb|EJN09061.1| acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/266 (74%), Positives = 234/266 (87%)
Query: 5 FLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIA 64
FL FE+ I +L+ KIE+LR +Q S +D S+EI LVKK +LT++IY+KLTPWQ+SQIA
Sbjct: 8 FLGFEQAIAELDAKIEELRFVQDDSAVDISEEIERLVKKSQQLTKDIYAKLTPWQVSQIA 67
Query: 65 RHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNER 124
RHP+RPYT+DY+REIFTD HELHGDR + DD SI+G LAR NG++CMVIGHQKGR+ ER
Sbjct: 68 RHPQRPYTMDYVREIFTDFHELHGDRTFSDDQSIVGGLARFNGQACMVIGHQKGRDTKER 127
Query: 125 IIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYV 184
+RNFGM KPEGYRKA+RLM +AEKFNLPIFTF+DTPGAFPGIDAEERGQSEAIGH++YV
Sbjct: 128 ALRNFGMPKPEGYRKAMRLMKVAEKFNLPIFTFVDTPGAFPGIDAEERGQSEAIGHNLYV 187
Query: 185 MSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRASDA 244
M++LKVPLI+TIIGEGGSGGALAIAV D LMLQYA YSVISPEGCASILWKT+ RA+DA
Sbjct: 188 MAELKVPLIATIIGEGGSGGALAIAVGDSVLMLQYATYSVISPEGCASILWKTADRAADA 247
Query: 245 AEALGLTADKLKSIGLINKIIKEPIA 270
AEALGLTA +LK+IGLI+KI+ EP+
Sbjct: 248 AEALGLTAHRLKAIGLIDKIVNEPLG 273
|
Source: Herbaspirillum sp. YR522 Species: Herbaspirillum sp. YR522 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|407939984|ref|YP_006855625.1| acetyl-CoA carboxylase, carboxyl transferase subunit alpha [Acidovorax sp. KKS102] gi|407897778|gb|AFU46987.1| acetyl-CoA carboxylase, carboxyl transferase subunit alpha [Acidovorax sp. KKS102] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 186/268 (69%), Positives = 236/268 (88%)
Query: 2 KNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQIS 61
K FL+FE+PI +LE KIE+LR +Q S +D S+EI+ L KK +LT++IYS+L+PWQI+
Sbjct: 3 KKTFLDFEQPIAELESKIEELRYVQTESAVDISEEIDQLSKKSQQLTKDIYSELSPWQIT 62
Query: 62 QIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV 121
+IARHP+RPYTLDY+R+IFTD ELHGDR+Y DDLSI+G LAR NG +CMVIGHQKGR+
Sbjct: 63 KIARHPERPYTLDYVRDIFTDFVELHGDRHYADDLSIVGGLARFNGHACMVIGHQKGRDT 122
Query: 122 NERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHS 181
ER +RNFGM+KPEGYRKA+RLM AEKF LP+FTF+DTPGA+PGIDAEERGQSEAIG +
Sbjct: 123 KERAMRNFGMSKPEGYRKALRLMKTAEKFKLPVFTFVDTPGAYPGIDAEERGQSEAIGRN 182
Query: 182 IYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241
I+ M++L+VP+I+TIIGEGGSGGALAI+V+D +MLQYAIYSVISPEGCASILWKTS++A
Sbjct: 183 IFEMAQLEVPIITTIIGEGGSGGALAISVADQVVMLQYAIYSVISPEGCASILWKTSEKA 242
Query: 242 SDAAEALGLTADKLKSIGLINKIIKEPI 269
+AA+ALG+TA +LK++GL++KI+ EP+
Sbjct: 243 QEAADALGITAHRLKALGLVDKIVSEPV 270
|
Source: Acidovorax sp. KKS102 Species: Acidovorax sp. KKS102 Genus: Acidovorax Family: Comamonadaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 318 | ||||||
| TIGR_CMR|CBU_1510 | 316 | CBU_1510 "acetyl-CoA carboxyla | 0.833 | 0.838 | 0.558 | 1e-75 | |
| UNIPROTKB|Q9KPW8 | 319 | accA "Acetyl-coenzyme A carbox | 0.761 | 0.758 | 0.570 | 8.6e-72 | |
| TIGR_CMR|VC_2244 | 319 | VC_2244 "acetyl-CoA carboxylas | 0.761 | 0.758 | 0.570 | 8.6e-72 | |
| TIGR_CMR|CPS_1571 | 318 | CPS_1571 "acetyl-CoA carboxyla | 0.754 | 0.754 | 0.541 | 3e-69 | |
| UNIPROTKB|P0ABD5 | 319 | accA [Escherichia coli K-12 (t | 0.748 | 0.746 | 0.55 | 6.5e-67 | |
| TIGR_CMR|GSU_1402 | 313 | GSU_1402 "acetyl-CoA carboxyla | 0.757 | 0.769 | 0.526 | 2.8e-66 | |
| TIGR_CMR|SPO_3616 | 320 | SPO_3616 "acetyl-CoA carboxyla | 0.830 | 0.825 | 0.456 | 5e-60 | |
| TIGR_CMR|BA_4845 | 324 | BA_4845 "acetyl-CoA carboxylas | 0.786 | 0.771 | 0.498 | 7.3e-59 | |
| TIGR_CMR|CHY_1142 | 323 | CHY_1142 "acetyl-CoA carboxyla | 0.754 | 0.743 | 0.487 | 2e-56 | |
| TIGR_CMR|CJE_0495 | 312 | CJE_0495 "acetyl-CoA carboxyla | 0.742 | 0.756 | 0.472 | 2.3e-55 |
| TIGR_CMR|CBU_1510 CBU_1510 "acetyl-CoA carboxylase, carboxyl transferase, alpha subunit" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 148/265 (55%), Positives = 193/265 (72%)
Query: 5 FLNFXXXXXXXXXXXXXXRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIA 64
+L+F R + S I+ ++E+N L +K +LT +I+S LT QI Q+A
Sbjct: 5 YLDFEQPIAELQAKIDELRRVGTSQEINLTEEVNKLEEKNAQLTRQIFSNLTAQQIVQLA 64
Query: 65 RHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNER 124
RHP RPYTLDYI+ IFTD +ELHGDR+Y +IIG LAR+NGE MVIGHQKGR E+
Sbjct: 65 RHPLRPYTLDYIQRIFTDFNELHGDRHYSQASAIIGGLARLNGEPVMVIGHQKGRTTQEK 124
Query: 125 IIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYV 184
I RNFGMA+PEG+RKA+RLM +AE+F++P+ T IDTPGA+PGI AEER QSEAI +++
Sbjct: 125 IYRNFGMARPEGFRKALRLMKLAERFSIPVITLIDTPGAYPGIGAEERNQSEAIARNLFE 184
Query: 185 MSKLKVPLISTXXXXXXXXXXXXXXVSDITLMLQYAIYSVISPEGCASILWKTSKRASDA 244
M++LK+P+I T V D TLMLQYA YSVISPEGCASILWK++++A +A
Sbjct: 185 MAQLKIPIICTIIGEGCSGGALAIGVGDRTLMLQYAYYSVISPEGCASILWKSAEKAGEA 244
Query: 245 AEALGLTADKLKSIGLINKIIKEPI 269
AEALGLTA++L +GLI++IIKEP+
Sbjct: 245 AEALGLTANRLHELGLIDEIIKEPL 269
|
|
| UNIPROTKB|Q9KPW8 accA "Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 138/242 (57%), Positives = 178/242 (73%)
Query: 28 SSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHELH 87
S+++D KE+ L KK +L ++I+S L WQ++Q+ARHP+RPYTLDY++ IFT+ EL
Sbjct: 31 SASVDLDKELEQLEKKSLELKKKIFSDLGAWQVAQLARHPQRPYTLDYLKHIFTEFDELA 90
Query: 88 GDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIA 147
GDR Y DD +I+G +AR+ G S MVIGHQKGR E++ RNFGM KPEGYRKA+RLM +A
Sbjct: 91 GDRAYADDKAIVGGIARLEGRSVMVIGHQKGRETREKVKRNFGMPKPEGYRKALRLMEMA 150
Query: 148 EKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXXXXXXXXXXX 207
E+FN+PI TFIDT GA+PG+ AEERGQSEAI ++ VMS LKVP+I
Sbjct: 151 ERFNMPIITFIDTAGAYPGVGAEERGQSEAIAKNLKVMSGLKVPVICNVVGEGGSGGALA 210
Query: 208 XXVSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKE 267
V D MLQY+ YSVISPEGCASILW+ S +A AAEA+GL A +LK + LI++II+E
Sbjct: 211 IGVGDYVNMLQYSTYSVISPEGCASILWRDSDKAPQAAEAMGLIAPRLKELELIDEIIEE 270
Query: 268 PI 269
P+
Sbjct: 271 PL 272
|
|
| TIGR_CMR|VC_2244 VC_2244 "acetyl-CoA carboxylase, carboxyl transferase alpha subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 138/242 (57%), Positives = 178/242 (73%)
Query: 28 SSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHELH 87
S+++D KE+ L KK +L ++I+S L WQ++Q+ARHP+RPYTLDY++ IFT+ EL
Sbjct: 31 SASVDLDKELEQLEKKSLELKKKIFSDLGAWQVAQLARHPQRPYTLDYLKHIFTEFDELA 90
Query: 88 GDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIA 147
GDR Y DD +I+G +AR+ G S MVIGHQKGR E++ RNFGM KPEGYRKA+RLM +A
Sbjct: 91 GDRAYADDKAIVGGIARLEGRSVMVIGHQKGRETREKVKRNFGMPKPEGYRKALRLMEMA 150
Query: 148 EKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXXXXXXXXXXX 207
E+FN+PI TFIDT GA+PG+ AEERGQSEAI ++ VMS LKVP+I
Sbjct: 151 ERFNMPIITFIDTAGAYPGVGAEERGQSEAIAKNLKVMSGLKVPVICNVVGEGGSGGALA 210
Query: 208 XXVSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKE 267
V D MLQY+ YSVISPEGCASILW+ S +A AAEA+GL A +LK + LI++II+E
Sbjct: 211 IGVGDYVNMLQYSTYSVISPEGCASILWRDSDKAPQAAEAMGLIAPRLKELELIDEIIEE 270
Query: 268 PI 269
P+
Sbjct: 271 PL 272
|
|
| TIGR_CMR|CPS_1571 CPS_1571 "acetyl-CoA carboxylase, carboxyl transferase, alpha subunit" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 130/240 (54%), Positives = 178/240 (74%)
Query: 30 NIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHELHGD 89
++D +I+ L +K + T++I+S L WQ +++ARHP+RPY+LDYI IFT+ EL GD
Sbjct: 32 DLDIEDQISQLREKNKEQTKKIFSNLDAWQTARVARHPQRPYSLDYIPRIFTEFDELAGD 91
Query: 90 RNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK 149
R Y +D +I+G AR++G+ M+IGHQKGR+ E++ RNFGM +PEGYRKA+RLM +AE+
Sbjct: 92 RAYANDNAIVGGTARLDGKPVMIIGHQKGRSTAEKVKRNFGMPRPEGYRKALRLMEMAER 151
Query: 150 FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXXXXXXXXXXXXX 209
FN+PI TFIDTPGA+PG+ AEERGQSEAI ++ VM++L VP+I T
Sbjct: 152 FNMPIITFIDTPGAYPGVGAEERGQSEAIARNLKVMARLSVPIICTVIGEGGSGGALAIG 211
Query: 210 VSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPI 269
V D MLQYA YSVISPEGCASILWKT+++A AA A+G+TA ++K + LIN I++EP+
Sbjct: 212 VGDRVNMLQYATYSVISPEGCASILWKTAEKAPTAAAAMGITAQRIKELDLINSIVEEPL 271
|
|
| UNIPROTKB|P0ABD5 accA [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 132/240 (55%), Positives = 173/240 (72%)
Query: 30 NIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHELHGD 89
NID +E++ L +K +LT +I++ L WQI+Q+ARHP+RPYTLDY+R F + EL GD
Sbjct: 35 NID--EEVHRLREKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVRLAFDEFDELAGD 92
Query: 90 RNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK 149
R Y DD +I+G +AR++G M+IGHQKGR E+I RNFGM PEGYRKA+RLM +AE+
Sbjct: 93 RAYADDKAIVGGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAER 152
Query: 150 FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXXXXXXXXXXXXX 209
F +PI TFIDTPGA+PG+ AEERGQSEAI ++ MS+L VP++ T
Sbjct: 153 FKMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIG 212
Query: 210 VSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPI 269
V D MLQY+ YSVISPEGCASILWK++ +A AAEA+G+ A +LK + LI+ II EP+
Sbjct: 213 VGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIPEPL 272
|
|
| TIGR_CMR|GSU_1402 GSU_1402 "acetyl-CoA carboxylase, carboxyl transferase, alpha subunit" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 127/241 (52%), Positives = 170/241 (70%)
Query: 29 SNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHELHG 88
+N + + E+ L KK +++ E I+S L+ WQ Q+ARH +RP+TLDY+ IFTD ELHG
Sbjct: 23 TNAELAGEVTKLEKKVDRMREVIFSNLSRWQTVQVARHIERPFTLDYLNLIFTDFTELHG 82
Query: 89 DRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAE 148
DR +GDD +I+ LA+++GE +VIGHQKGR+ E++ RNFGM PEGYRKA+R+M +AE
Sbjct: 83 DRLFGDDHAIVAGLAKLDGEPVVVIGHQKGRDTKEKVYRNFGMPNPEGYRKALRIMELAE 142
Query: 149 KFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXXXXXXXXXXXX 208
+F LPI TF+DTPGAFPGI AEERGQ+EAI ++ M+ L VP+I
Sbjct: 143 RFRLPIITFVDTPGAFPGIGAEERGQAEAIARNLREMAALTVPIIVVVTGEGGSGGALAI 202
Query: 209 XVSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEP 268
V D LMLQY+IY+VISPEGCA+ILW + AAEAL LTA LK + +I++I+ EP
Sbjct: 203 AVGDRVLMLQYSIYAVISPEGCAAILWSDGTKGEQAAEALKLTAKDLKELEVIDEIVPEP 262
Query: 269 I 269
+
Sbjct: 263 L 263
|
|
| TIGR_CMR|SPO_3616 SPO_3616 "acetyl-CoA carboxylase, carboxyl transferase, alpha subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 121/265 (45%), Positives = 169/265 (63%)
Query: 5 FLNFXXXXXXXXXXXXXXRSL-QFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQI 63
+L+F R+L + + +D ++E L K KL +E+Y LTPW+ Q+
Sbjct: 4 YLDFEKPLAEIEGKAEELRALARANEEMDVAEEAAALDAKAAKLLDELYRDLTPWRKCQV 63
Query: 64 ARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE 123
ARHP+RP+ DY+ +FT+ L GDRN+ DDL+++G LAR N MVIGH+KG +
Sbjct: 64 ARHPERPHCRDYVDALFTEYTPLAGDRNFADDLAVMGGLARFNDRPVMVIGHEKGSDTKS 123
Query: 124 RIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIY 183
RI NFGMA+PEGYRKAVRL+ +A +F LP+ T +DT GA+PG AEERGQSEAI S
Sbjct: 124 RIAHNFGMARPEGYRKAVRLIEMAGRFGLPVVTLVDTAGAYPGKGAEERGQSEAIARSTE 183
Query: 184 VMSKLKVPLISTXXXXXXXXXXXXXXVSDITLMLQYAIYSVISPEGCASILWKTSKRASD 243
+ + VPL+S ++ ML+++IYSVISPEGCASILWK +++ +
Sbjct: 184 MCLRAGVPLVSVIIGEGGSGGAVAFATANRVAMLEHSIYSVISPEGCASILWKNAEKMRE 243
Query: 244 AAEALGLTADKLKSIGLINKIIKEP 268
AAEAL LTA L +G+++++I EP
Sbjct: 244 AAEALRLTAQDLLKLGVVDRVIPEP 268
|
|
| TIGR_CMR|BA_4845 BA_4845 "acetyl-CoA carboxylase, carboxyl transferase, alpha subunit" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 126/253 (49%), Positives = 162/253 (64%)
Query: 28 SSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHELH 87
+S +D S+EI L K L E+IY + W QIARH +RP TLDYI +FTD E H
Sbjct: 26 NSQMDFSEEIRILEDKLENLEEDIYGNMKVWDRVQIARHAERPTTLDYIEHLFTDFFECH 85
Query: 88 GDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIA 147
GDR +GDD +I+G +A+ G VIGHQ+G++ E I RNFGM PEGYRKA+RLM A
Sbjct: 86 GDRLFGDDAAIVGGIAKYKGMPVTVIGHQRGKDTKENIRRNFGMPHPEGYRKALRLMKQA 145
Query: 148 EKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXXXXXXXXXXX 207
EKFN PI FIDT GA+PG AEERGQSEAI +++ M+ L VP+I
Sbjct: 146 EKFNRPIICFIDTKGAYPGKAAEERGQSEAIARNLFEMAGLTVPVICIVIGEGGSGGALG 205
Query: 208 XXVSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKE 267
V D ML+ + YSVI+PEG A+ILWK + +A +AAEA+ +TA LK +G+I++II E
Sbjct: 206 LGVGDYIHMLENSTYSVITPEGAAAILWKDAGKAKEAAEAMRITAADLKELGVIDEIIPE 265
Query: 268 PIAYSGGIDSSVL 280
GG +VL
Sbjct: 266 A---KGGAHRNVL 275
|
|
| TIGR_CMR|CHY_1142 CHY_1142 "acetyl-CoA carboxylase, carboxyl transferase, alpha subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 117/240 (48%), Positives = 153/240 (63%)
Query: 30 NIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHELHGD 89
NID S+E+ L K +L +EIY LTPWQ +ARHP+RP T DYI + D EL GD
Sbjct: 30 NIDVSRELELLSAKAQQLAKEIYQNLTPWQRVLLARHPERPNTRDYINYLCDDFIELKGD 89
Query: 90 RNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK 149
R +GDD ++IG + I ++G+ KG++ E I+RNFGMA PEGYRKA+RL AEK
Sbjct: 90 RRFGDDPAMIGGIGIIENIPVTIVGNLKGKDTKENIMRNFGMAHPEGYRKAIRLFKQAEK 149
Query: 150 FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXXXXXXXXXXXXX 209
F P+ TFIDTPGAF GI AEERGQ +AI +I + LK P+++
Sbjct: 150 FGRPVLTFIDTPGAFCGIGAEERGQFQAIAEAIATLISLKTPVLAVITGEGGSGGALALA 209
Query: 210 VSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPI 269
D LML+ A++SVI+PE A+ILWK S RA +A+E L LT++ L GLI+ II EP+
Sbjct: 210 AGDKLLMLENAVFSVIAPESFAAILWKDSSRAQEASELLKLTSEHLLEFGLIDGIIPEPL 269
|
|
| TIGR_CMR|CJE_0495 CJE_0495 "acetyl-CoA carboxylase, carboxyl transferase, alpha subunit" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 112/237 (47%), Positives = 154/237 (64%)
Query: 32 DTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHELHGDRN 91
DT + ++ L K K + Y L+ +Q Q+ARHP RPY LDYI I D HE+HGDR
Sbjct: 26 DT-EAVSILKKNLEKEISKTYKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRA 84
Query: 92 YGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFN 151
+ DD +I+ + + + +VIG QKGR ++I RNFGM PEGYRKA+R+ +AEKF
Sbjct: 85 FRDDPAIVCFMGYLGEKKIIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVARLAEKFQ 144
Query: 152 LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXXXXXXXXXXXXXVS 211
+PI IDTPGA+PGI AEERGQSEAI ++Y +S LK+P I+ V+
Sbjct: 145 IPILFLIDTPGAYPGIGAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVA 204
Query: 212 DITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEP 268
D +M++ +++SVISPEGCA+ILW ++ A +A+ +TAD LKS GLI+ +I EP
Sbjct: 205 DKLVMMKNSVFSVISPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEP 261
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9JUF0 | ACCA_NEIMA | 6, ., 4, ., 1, ., 2 | 0.6407 | 0.8490 | 0.8463 | yes | N/A |
| A4JFC8 | ACCA_BURVG | 6, ., 4, ., 1, ., 2 | 0.6777 | 0.8490 | 0.8359 | yes | N/A |
| A3NB48 | ACCA_BURP6 | 6, ., 4, ., 1, ., 2 | 0.6777 | 0.8490 | 0.8359 | yes | N/A |
| Q2Y814 | ACCA_NITMU | 6, ., 4, ., 1, ., 2 | 0.6788 | 0.8522 | 0.8416 | yes | N/A |
| A3NWX6 | ACCA_BURP0 | 6, ., 4, ., 1, ., 2 | 0.6777 | 0.8490 | 0.8359 | yes | N/A |
| Q8Y075 | ACCA_RALSO | 6, ., 4, ., 1, ., 2 | 0.6962 | 0.8490 | 0.8385 | yes | N/A |
| Q47HT1 | ACCA_DECAR | 6, ., 4, ., 1, ., 2 | 0.6666 | 0.8490 | 0.8385 | yes | N/A |
| Q7W860 | ACCA_BORPA | 6, ., 4, ., 1, ., 2 | 0.6666 | 0.8490 | 0.8411 | yes | N/A |
| B2U9Q0 | ACCA_RALPJ | 6, ., 4, ., 1, ., 2 | 0.7 | 0.8490 | 0.8385 | yes | N/A |
| A3ML41 | ACCA_BURM7 | 6, ., 4, ., 1, ., 2 | 0.6777 | 0.8490 | 0.8359 | yes | N/A |
| Q0BDV6 | ACCA_BURCM | 6, ., 4, ., 1, ., 2 | 0.6777 | 0.8490 | 0.8359 | yes | N/A |
| Q39EZ0 | ACCA_BURS3 | 6, ., 4, ., 1, ., 2 | 0.6740 | 0.8490 | 0.8359 | yes | N/A |
| A9LZ61 | ACCA_NEIM0 | 6, ., 4, ., 1, ., 2 | 0.6370 | 0.8490 | 0.8463 | yes | N/A |
| Q7WLK8 | ACCA_BORBR | 6, ., 4, ., 1, ., 2 | 0.6666 | 0.8490 | 0.8411 | yes | N/A |
| Q5F8F5 | ACCA_NEIG1 | 6, ., 4, ., 1, ., 2 | 0.6370 | 0.8490 | 0.8463 | yes | N/A |
| A0K8K0 | ACCA_BURCH | 6, ., 4, ., 1, ., 2 | 0.6777 | 0.8490 | 0.8359 | yes | N/A |
| Q62J39 | ACCA_BURMA | 6, ., 4, ., 1, ., 2 | 0.6777 | 0.8490 | 0.8359 | yes | N/A |
| A1V5G6 | ACCA_BURMS | 6, ., 4, ., 1, ., 2 | 0.6777 | 0.8490 | 0.8359 | yes | N/A |
| B1JUK6 | ACCA_BURCC | 6, ., 4, ., 1, ., 2 | 0.6777 | 0.8490 | 0.8359 | yes | N/A |
| A4SX64 | ACCA_POLSQ | 6, ., 4, ., 1, ., 2 | 0.6629 | 0.8490 | 0.8359 | yes | N/A |
| A9AHN8 | ACCA_BURM1 | 6, ., 4, ., 1, ., 2 | 0.6814 | 0.8490 | 0.8359 | yes | N/A |
| B3R4D3 | ACCA_CUPTR | 6, ., 4, ., 1, ., 2 | 0.7148 | 0.8490 | 0.8359 | yes | N/A |
| Q7VX94 | ACCA_BORPE | 6, ., 4, ., 1, ., 2 | 0.6666 | 0.8490 | 0.8411 | yes | N/A |
| A6VUT8 | ACCA_MARMS | 6, ., 4, ., 1, ., 2 | 0.6127 | 0.8364 | 0.8444 | yes | N/A |
| Q473D1 | ACCA_CUPPJ | 6, ., 4, ., 1, ., 2 | 0.7148 | 0.8490 | 0.8359 | yes | N/A |
| Q3SL76 | ACCA_THIDA | 6, ., 4, ., 1, ., 2 | 0.6579 | 0.8459 | 0.8354 | yes | N/A |
| A1KTZ4 | ACCA_NEIMF | 6, ., 4, ., 1, ., 2 | 0.6407 | 0.8490 | 0.8463 | yes | N/A |
| B1XUY6 | ACCA_POLNS | 6, ., 4, ., 1, ., 2 | 0.6629 | 0.8490 | 0.8359 | yes | N/A |
| A2SAY0 | ACCA_BURM9 | 6, ., 4, ., 1, ., 2 | 0.6777 | 0.8490 | 0.8359 | yes | N/A |
| Q63ST0 | ACCA_BURPS | 6, ., 4, ., 1, ., 2 | 0.6777 | 0.8490 | 0.8359 | yes | N/A |
| C1D531 | ACCA_LARHH | 6, ., 4, ., 1, ., 2 | 0.6666 | 0.8490 | 0.8385 | yes | N/A |
| B1YSM6 | ACCA_BURA4 | 6, ., 4, ., 1, ., 2 | 0.6777 | 0.8490 | 0.8359 | yes | N/A |
| Q7NT71 | ACCA_CHRVO | 6, ., 4, ., 1, ., 2 | 0.6555 | 0.8490 | 0.8411 | yes | N/A |
| Q0KCA7 | ACCA_CUPNH | 6, ., 4, ., 1, ., 2 | 0.7148 | 0.8490 | 0.8359 | yes | N/A |
| B2SXP7 | ACCA_BURPP | 6, ., 4, ., 1, ., 2 | 0.7 | 0.8490 | 0.8359 | yes | N/A |
| Q13X62 | ACCA_BURXL | 6, ., 4, ., 1, ., 2 | 0.7 | 0.8490 | 0.8359 | yes | N/A |
| Q4KHG0 | ACCA_PSEF5 | 6, ., 4, ., 1, ., 2 | 0.6037 | 0.8490 | 0.8571 | yes | N/A |
| Q82VP5 | ACCA_NITEU | 6, ., 4, ., 1, ., 2 | 0.6666 | 0.8490 | 0.8385 | yes | N/A |
| B2JIR9 | ACCA_BURP8 | 6, ., 4, ., 1, ., 2 | 0.6851 | 0.8490 | 0.8359 | yes | N/A |
| Q2KX40 | ACCA_BORA1 | 6, ., 4, ., 1, ., 2 | 0.6814 | 0.8490 | 0.8411 | yes | N/A |
| B4RLH9 | ACCA_NEIG2 | 6, ., 4, ., 1, ., 2 | 0.6370 | 0.8490 | 0.8517 | yes | N/A |
| A1K3X7 | ACCA_AZOSB | 6, ., 4, ., 1, ., 2 | 0.6654 | 0.8459 | 0.8380 | yes | N/A |
| C3K6H2 | ACCA_PSEFS | 6, ., 4, ., 1, ., 2 | 0.6074 | 0.8490 | 0.8571 | yes | N/A |
| Q1LPF3 | ACCA_RALME | 6, ., 4, ., 1, ., 2 | 0.7111 | 0.8490 | 0.8359 | yes | N/A |
| B8GQ68 | ACCA_THISH | 6, ., 4, ., 1, ., 2 | 0.6222 | 0.8490 | 0.8463 | yes | N/A |
| Q5P2J0 | ACCA_AROAE | 6, ., 4, ., 1, ., 2 | 0.6753 | 0.8427 | 0.8322 | yes | N/A |
| B4ED71 | ACCA_BURCJ | 6, ., 4, ., 1, ., 2 | 0.6777 | 0.8490 | 0.8359 | yes | N/A |
| Q1BHN9 | ACCA_BURCA | 6, ., 4, ., 1, ., 2 | 0.6777 | 0.8490 | 0.8359 | yes | N/A |
| Q9JRV8 | ACCA_NEIMB | 6, ., 4, ., 1, ., 2 | 0.6370 | 0.8490 | 0.8463 | yes | N/A |
| Q3JQT8 | ACCA_BURP1 | 6, ., 4, ., 1, ., 2 | 0.6777 | 0.8490 | 0.8359 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.4.1.2 | 0.991 |
| 3rd Layer | 6.4.1 | 0.976 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 318 | |||
| PRK05724 | 319 | PRK05724, PRK05724, acetyl-CoA carboxylase carboxy | 0.0 | |
| COG0825 | 317 | COG0825, AccA, Acetyl-CoA carboxylase alpha subuni | 1e-161 | |
| TIGR00513 | 316 | TIGR00513, accA, acetyl-CoA carboxylase, carboxyl | 1e-140 | |
| CHL00198 | 322 | CHL00198, accA, acetyl-CoA carboxylase carboxyltra | 1e-110 | |
| PLN03230 | 431 | PLN03230, PLN03230, acetyl-coenzyme A carboxylase | 1e-100 | |
| PRK12319 | 256 | PRK12319, PRK12319, acetyl-CoA carboxylase subunit | 2e-89 | |
| PLN03229 | 762 | PLN03229, PLN03229, acetyl-coenzyme A carboxylase | 9e-88 | |
| pfam03255 | 145 | pfam03255, ACCA, Acetyl co-enzyme A carboxylase ca | 1e-70 | |
| COG4799 | 526 | COG4799, COG4799, Acetyl-CoA carboxylase, carboxyl | 5e-15 | |
| pfam01039 | 487 | pfam01039, Carboxyl_trans, Carboxyl transferase do | 1e-12 | |
| TIGR01117 | 512 | TIGR01117, mmdA, methylmalonyl-CoA decarboxylase a | 5e-12 | |
| cd01992 | 185 | cd01992, PP-ATPase, N-terminal domain of predicted | 5e-11 | |
| TIGR02432 | 189 | TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine syn | 8e-11 | |
| pfam01171 | 182 | pfam01171, ATP_bind_3, PP-loop family | 2e-10 | |
| PRK10660 | 436 | PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Pro | 3e-08 | |
| COG4799 | 526 | COG4799, COG4799, Acetyl-CoA carboxylase, carboxyl | 5e-07 | |
| COG0037 | 298 | COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [C | 5e-07 | |
| PLN02820 | 569 | PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxyla | 2e-05 | |
| cd01986 | 103 | cd01986, Alpha_ANH_like, Adenine nucleotide alpha | 8e-04 |
| >gnl|CDD|235580 PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Score = 509 bits (1314), Expect = 0.0
Identities = 173/274 (63%), Positives = 217/274 (79%), Gaps = 3/274 (1%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQI 60
M +L+FE+PI +LE KIE+LR++ S++D S+EI L KK +LT++IYS LTPWQ
Sbjct: 1 MMLNYLDFEKPIAELEAKIEELRAVAEDSDVDLSEEIERLEKKLEELTKKIYSNLTPWQK 60
Query: 61 SQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
Q+ARHP+RPYTLDYI +FTD ELHGDR + DD +I+G LAR+NG MVIGHQKGR+
Sbjct: 61 VQLARHPQRPYTLDYIELLFTDFTELHGDRAFADDKAIVGGLARLNGRPVMVIGHQKGRD 120
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
E+I RNFGM +PEGYRKA+RLM +AEKF LPI TFIDTPGA+PGI AEERGQSEAI
Sbjct: 121 TKEKIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIAR 180
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240
++ M++LKVP+I T+IGEGGSGGALAI V D LML+Y+ YSVISPEGCASILWK + +
Sbjct: 181 NLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYSVISPEGCASILWKDASK 240
Query: 241 ASDAAEALGLTADKLKSIGLINKIIKEPIAYSGG 274
A +AAEA+ +TA LK +G+I++II EP+ GG
Sbjct: 241 APEAAEAMKITAQDLKELGIIDEIIPEPL---GG 271
|
Length = 319 |
| >gnl|CDD|223895 COG0825, AccA, Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 450 bits (1160), Expect = e-161
Identities = 163/265 (61%), Positives = 210/265 (79%)
Query: 5 FLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIA 64
+L+FE+PI +LE KI++L++L +++D S EI L K+ +LT++IYS LTPWQ Q+A
Sbjct: 4 YLDFEKPIAELEAKIDELKALAEENDVDLSDEIERLEKRLAELTKKIYSNLTPWQRVQLA 63
Query: 65 RHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNER 124
RHP RPYTLDYI +FTD ELHGDR + DD +I+G LAR G+ +VIGHQKGR+ E+
Sbjct: 64 RHPDRPYTLDYIELLFTDFVELHGDRAFADDPAIVGGLARFGGQPVVVIGHQKGRDTKEK 123
Query: 125 IIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYV 184
+ RNFGM +PEGYRKA+RLM +AEKF LPI TFIDTPGA+PGI AEERGQSEAI ++
Sbjct: 124 LKRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLRE 183
Query: 185 MSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRASDA 244
M++LKVP+IS +IGEGGSGGALAI V+D LML+ + YSVISPEGCASILWK + +A +A
Sbjct: 184 MARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSVISPEGCASILWKDASKAKEA 243
Query: 245 AEALGLTADKLKSIGLINKIIKEPI 269
AEA+ +TA LK +G+I+ II EP+
Sbjct: 244 AEAMKITAHDLKELGIIDGIIPEPL 268
|
Length = 317 |
| >gnl|CDD|233004 TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Score = 399 bits (1026), Expect = e-140
Identities = 161/281 (57%), Positives = 205/281 (72%), Gaps = 3/281 (1%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQI 60
M +L+FE+PI +LE KIE LR+ ++D S+EI L K+ +LT++I+S L WQ
Sbjct: 1 MMANYLDFEKPIAELEAKIESLRARSRDEDVDLSEEIERLEKRSVELTKKIFSNLGAWQR 60
Query: 61 SQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
Q+ARHP RPYTLDYI IF D EL GDR Y DD +I+G +AR++G +VIGHQKGR+
Sbjct: 61 LQLARHPDRPYTLDYIELIFDDFFELAGDRAYADDKAIVGGIARLDGRPVVVIGHQKGRD 120
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
E++ RNFGM PEGYRKA+RLM +AE+F +PI TFIDTPGA+PGI AEERGQSEAI
Sbjct: 121 TKEKLRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGAYPGIGAEERGQSEAIAR 180
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240
++ M++L VP+I T+IGEGGSGGALAI V D ML+Y+ YSVISPEGCA+ILWK + +
Sbjct: 181 NLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYSVISPEGCAAILWKDASK 240
Query: 241 ASDAAEALGLTADKLKSIGLINKIIKEPIAYSGGIDSSVLL 281
A AAEA+ +TA LK +GLI+ II EP GG + L
Sbjct: 241 APKAAEAMKITAPDLKELGLIDSIIPEP---LGGAHRNPLA 278
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 316 |
| >gnl|CDD|214393 CHL00198, accA, acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Score = 323 bits (830), Expect = e-110
Identities = 130/269 (48%), Positives = 183/269 (68%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQI 60
K +F +P+ +LE ++E+L L ++ + ++ +K L +EI+ LTP Q
Sbjct: 4 RKPHVPDFMKPLAELESQVEELSKLAPKNDKVINNKLKSFQRKLRILKKEIFYSLTPLQR 63
Query: 61 SQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
+ R +RP TLDYI I + ELHGDR DD +++G + +ING + + +GHQ+GRN
Sbjct: 64 LHLVRQSERPTTLDYIPYILDEWIELHGDRGGSDDPALVGGIGKINGRTIVFLGHQRGRN 123
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
E ++RNFGM P GYRKA+RLM A KF LPI TFIDTPGA+ G+ AE+ GQ EAI
Sbjct: 124 TKENVLRNFGMPSPGGYRKALRLMKHANKFGLPILTFIDTPGAWAGVKAEKLGQGEAIAV 183
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240
++ M +VP+I TIIGEGGSGGAL I + D +ML+YA+Y+V +PE CA+ILWK SK+
Sbjct: 184 NLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTVATPEACAAILWKDSKK 243
Query: 241 ASDAAEALGLTADKLKSIGLINKIIKEPI 269
+ DAAEAL +T++ LK +G+I++II EPI
Sbjct: 244 SLDAAEALKITSEDLKVLGIIDEIIPEPI 272
|
Length = 322 |
| >gnl|CDD|178769 PLN03230, PLN03230, acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Score = 301 bits (773), Expect = e-100
Identities = 132/268 (49%), Positives = 184/268 (68%)
Query: 2 KNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQIS 61
K + L FE+PI+ LE +I+++R L + +D S +I +L ++ +++ E+YS+LTP Q
Sbjct: 72 KPVTLPFEKPIVDLENRIDEVRELANKTGVDFSAQIAELEERYDQVRRELYSRLTPVQRL 131
Query: 62 QIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV 121
+ARHP RP LD++ + ELHGDR DD +I+ + + G S M IGHQKGRN
Sbjct: 132 SVARHPNRPTFLDHVLNMTDKWVELHGDRAGFDDPAIVCGIGSMEGMSFMFIGHQKGRNT 191
Query: 122 NERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHS 181
E I RNF M +P GYRKA+R M AEKF PI TF+DTPGA+ GI AEE GQ EAI +
Sbjct: 192 KENIYRNFAMPQPNGYRKALRFMRHAEKFGFPILTFVDTPGAYAGIKAEELGQGEAIAFN 251
Query: 182 IYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241
+ M L+VP+I+T+IGEGGSGGALAI + LM++ A+Y V SPE CA+ILWK++ A
Sbjct: 252 LREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYVASPEACAAILWKSAAAA 311
Query: 242 SDAAEALGLTADKLKSIGLINKIIKEPI 269
AAEAL +TA +L +G++++I+ EP+
Sbjct: 312 PKAAEALRITAAELVKLGVVDEIVPEPL 339
|
Length = 431 |
| >gnl|CDD|183435 PRK12319, PRK12319, acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 2e-89
Identities = 111/209 (53%), Positives = 151/209 (72%)
Query: 59 QISQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKG 118
+I + AR R TLDY IF D ELHGDR++ DD +++G + + G+ V+G QKG
Sbjct: 6 RILKEARDQGRLTTLDYATLIFDDFMELHGDRHFRDDGAVVGGIGYLAGQPVTVVGIQKG 65
Query: 119 RNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAI 178
+N+ + + RNFG PEGYRKA+RLM AEKF P+ TFI+T GA+PG+ AEERGQ EAI
Sbjct: 66 KNLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQGEAI 125
Query: 179 GHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTS 238
++ MS LKVP+I+ IIGEGGSGGALA+AV+D ML+ +Y+V+SPEG ASILWK
Sbjct: 126 ARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVWMLENTMYAVLSPEGFASILWKDG 185
Query: 239 KRASDAAEALGLTADKLKSIGLINKIIKE 267
RA++AAE + +TA +L +G+++K+I E
Sbjct: 186 SRATEAAELMKITAGELLEMGVVDKVIPE 214
|
Length = 256 |
| >gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Score = 278 bits (712), Expect = 9e-88
Identities = 131/268 (48%), Positives = 179/268 (66%)
Query: 2 KNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQIS 61
K + L+FE+P++ LEKKI +R + + +D S +I L K + +++Y+ LTP Q
Sbjct: 93 KPVTLDFEKPLVDLEKKIVDVRKMANETGLDFSDQIISLESKYQQALKDLYTHLTPIQRV 152
Query: 62 QIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV 121
IARHP RP LD+I I ELHGDR DD +I+ + I+G+ M IGHQKGRN
Sbjct: 153 NIARHPNRPTFLDHIFNITDKFVELHGDRAGYDDPAIVTGIGTIDGKRYMFIGHQKGRNT 212
Query: 122 NERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHS 181
E I+RNFGM P GYRKA+R+M+ A+ PI TFIDTPGA+ + +EE GQ EAI H+
Sbjct: 213 KENIMRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHN 272
Query: 182 IYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241
+ M LKVP++S +IGEGGSGGALAI ++ LML+ A++ V SPE CA+ILWK++K A
Sbjct: 273 LRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKAA 332
Query: 242 SDAAEALGLTADKLKSIGLINKIIKEPI 269
AAE L +TA +L + + + II EP+
Sbjct: 333 PKAAEKLRITAQELCRLQIADGIIPEPL 360
|
Length = 762 |
| >gnl|CDD|217457 pfam03255, ACCA, Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 1e-70
Identities = 82/145 (56%), Positives = 103/145 (71%)
Query: 4 IFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQI 63
+ L FE+P+ +LE KI++LR L +++D S EI+ L KK +KL EIYS LTPWQ Q+
Sbjct: 1 VLLEFEKPLAELEAKIDELRKLARKNDVDVSDEIHRLEKKLDKLKREIYSNLTPWQRVQL 60
Query: 64 ARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE 123
ARHP RP TLDYI I D ELHGDR DD +I+G L RI+G +VIGHQKGR+ E
Sbjct: 61 ARHPDRPTTLDYIENILDDFIELHGDRAGADDPAIVGGLGRIDGRPVVVIGHQKGRDTKE 120
Query: 124 RIIRNFGMAKPEGYRKAVRLMHIAE 148
++RNFGM PEGYRKA+RLM A+
Sbjct: 121 NLLRNFGMPAPEGYRKALRLMKHAD 145
|
Acetyl co-enzyme A carboxylase carboxyltransferase is composed of an alpha and beta subunit. Length = 145 |
| >gnl|CDD|227136 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 5e-15
Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 27/202 (13%)
Query: 67 PKRPYTL-DYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE 123
P++PY + + I + + E Y ++ + G ARI+G +I N+
Sbjct: 284 PRKPYDVREVIARLVDDGEFLEFK--AGYAKNI-VTG-FARIDGRPVGIIA-------NQ 332
Query: 124 RIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHS-- 181
G+ + KA R + + + FN+P+ +DTPG PG D E G I H
Sbjct: 333 PRHLG-GVLDIDSADKAARFIRLCDAFNIPLVFLVDTPGFMPGTDQEYGG---IIKHGAK 388
Query: 182 -IYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAI----YSVISPEGCASILWK 236
+Y +++ VP I+ I + G + + YA +V+ PEG SIL++
Sbjct: 389 LLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIAVMGPEGAVSILYR 448
Query: 237 TSKRASDAAEALGLTADKLKSI 258
K + A A K +
Sbjct: 449 --KELAAAERPEEREALLRKQL 468
|
Length = 526 |
| >gnl|CDD|216259 pfam01039, Carboxyl_trans, Carboxyl transferase domain | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-12
Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 25/191 (13%)
Query: 67 PKRPYTLDYIREIFTDI------HELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
PKRPY D +RE+ I E Y + + G AR+ G V+
Sbjct: 252 PKRPY--D-VREVIAGIVDEGSFFETKAG--YAKTV-VTG-FARLGGIPVGVVA------ 298
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
N+ + G+ + KA R + + FN+P+ +D PG PG D E G +
Sbjct: 299 -NQPRVLA-GVLFIDSADKAARFIRDCDAFNIPLVILVDVPGFLPGTDQEYGGILKHGAK 356
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIA----VSDITLMLQYAIYSVISPEGCASILWK 236
+Y +++ VP I+ I + G + + +D A +V+ PEG I ++
Sbjct: 357 LLYALAEATVPKITVIPRKAYGGAYVVMDSKINGADAVFAWPTARIAVMGPEGAVEIKFR 416
Query: 237 TSKRASDAAEA 247
A+
Sbjct: 417 KELAAATMRYK 427
|
All of the members in this family are biotin dependent carboxylases. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxoacid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule. Length = 487 |
| >gnl|CDD|130187 TIGR01117, mmdA, methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 5e-12
Identities = 65/236 (27%), Positives = 100/236 (42%), Gaps = 29/236 (12%)
Query: 19 IEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTL-DYIR 77
I +L S S+N++ + + + T E+Y L P +P +PY + D I
Sbjct: 236 IRRLLSFLPSNNMEKAPLV-KTGDDPTRETPELYD-LLP-------DNPNKPYDMRDVIT 286
Query: 78 EIFT--DIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPE 135
I D E+ Y + II ARING+S +I +Q G +
Sbjct: 287 AIVDNGDYLEVQ--PYYAPN--IITCFARINGQSVGIIANQP--------KVMAGCLDID 334
Query: 136 GYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLIST 195
K R + + FN+PI TF+D PG PG++ E G +Y S+ VP ++
Sbjct: 335 SSDKIARFIRFCDAFNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTI 394
Query: 196 IIGEGGSGGALAIAV----SDITLMLQYAIYSVISPEGCASILW-KTSKRASDAAE 246
I + G LA+ +D A +V+ P G A+I++ K K A D A
Sbjct: 395 ITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAVMGPAGAANIIFRKDIKEAKDPAA 450
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane [Energy metabolism, ATP-proton motive force interconversion, Energy metabolism, Fermentation, Transport and binding proteins, Cations and iron carrying compounds]. Length = 512 |
| >gnl|CDD|238950 cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-11
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCKN 317
+A SGG DS LL + L ++ H++HGL P SD+ +
Sbjct: 4 VAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEAAFVAD 52
|
This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus. Length = 185 |
| >gnl|CDD|233864 TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine synthetase, N-terminal domain | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 8e-11
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCKN 317
+A SGG+DS LL + L KI+ H++HGL P SD+ +
Sbjct: 4 VAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQ 52
|
The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer) [Protein synthesis, tRNA and rRNA base modification]. Length = 189 |
| >gnl|CDD|216343 pfam01171, ATP_bind_3, PP-loop family | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-10
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCKN 317
+A SGG DS LL + L + I H++HGL SD+ K
Sbjct: 4 VAVSGGPDSMALLYLLKKLKPKFGIDLTAAHVDHGLREESDREAQFVKE 52
|
This family of proteins belongs to the PP-loop superfamily. Length = 182 |
| >gnl|CDD|182626 PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 7/53 (13%)
Query: 269 IAYSGGIDSSVLLDISFTLFC----NYKIQFYVFHINHGLSPSSDKWLIHCKN 317
+A+SGG+DS+VLL + L N + H++HGLSP++D W+ HC+
Sbjct: 20 VAFSGGLDSTVLLHL---LVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQ 69
|
Length = 436 |
| >gnl|CDD|227136 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-07
Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 24/148 (16%)
Query: 79 IFTDIHEL--HGDRNYGDDLSIIGVLA---RINGESCMVIGHQ---KGRNVNERIIRNFG 130
F ++ L H ++L GV+ ING V + KG G
Sbjct: 57 SFLELGALAGHRMGGDANELPGDGVVTGIGTINGRKVFVFANDFTVKG-----------G 105
Query: 131 MAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKL-- 188
+K +R +A + LP+ D+ GA G Y ++
Sbjct: 106 TLGEMTAKKILRAQELAIENGLPVIGLNDSGGARIQEGVPSL---AGYGRIFYRNARASG 162
Query: 189 KVPLISTIIGEGGSGGALAIAVSDITLM 216
+P IS ++G GGA + A++D +M
Sbjct: 163 VIPQISVVMGPCAGGGAYSPALTDFVIM 190
|
Length = 526 |
| >gnl|CDD|223115 COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 5e-07
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 254 KLKSIGLIN-KIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWL 312
++ LI KI+ +A SGG DS LL + L +I+ H++HGL SD+
Sbjct: 13 AIREFNLIEYKIL---VAVSGGKDSLALLHLLKEL--GRRIEVEAVHVDHGLRGYSDQEA 67
Query: 313 IHCKN 317
+
Sbjct: 68 ELVEK 72
|
Length = 298 |
| >gnl|CDD|178415 PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 65/279 (23%), Positives = 112/279 (40%), Gaps = 48/279 (17%)
Query: 23 RSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTL--DYIREI- 79
S FS+N SK + L+ + ++ + P + RH R L + I +
Sbjct: 39 NSDAFSAN---SKAMEGLLSELRSHVAKVRAGGGP---EAVKRHRSRNKLLPRERIDRLL 92
Query: 80 -----FTDIHELHGDRNYGDDL---SIIGVLARINGESCMVIGHQKGRNVNERIIRNFGM 131
F ++ +L G YG+DL I+ + ++G CM + N+ ++ G
Sbjct: 93 DPGSPFLELSQLAGHELYGEDLPSGGIVTGIGPVHGRLCMFVA-------NDPTVKG-GT 144
Query: 132 AKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIY---VMSKL 188
P +K +R IA + LP +D+ GA AE + G Y MS
Sbjct: 145 YYPITVKKHLRAQEIAAQCRLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSA 204
Query: 189 KVPLISTIIGEGGSGGALAIAVSDITLM--------------LQYAIYSVISPE--GCAS 232
+P I+ ++G +GGA A++D +++ ++ A +S E G A
Sbjct: 205 GIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLAGPPLVKAATGEEVSAEDLGGAD 264
Query: 233 ILWKTS----KRASDAAEALGLTADKLKSIGLINKIIKE 267
+ K S A D AL + + +K++ L K E
Sbjct: 265 VHCKVSGVSDHFAQDELHALAIGRNIVKNLHLAAKQGME 303
|
Length = 569 |
| >gnl|CDD|238944 cd01986, Alpha_ANH_like, Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 8e-04
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCKN 317
+A+SGG DSSV + L Q ++HG+SP + K
Sbjct: 3 VAFSGGKDSSVAAALLKKLG----YQVIAVTVDHGISPRLEDAKEIAKE 47
|
The domain forms a apha/beta/apha fold which binds to Adenosine group.. Length = 103 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 318 | |||
| PRK05724 | 319 | acetyl-CoA carboxylase carboxyltransferase subunit | 100.0 | |
| TIGR00513 | 316 | accA acetyl-CoA carboxylase, carboxyl transferase, | 100.0 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase al | 100.0 | |
| COG0825 | 317 | AccA Acetyl-CoA carboxylase alpha subunit [Lipid m | 100.0 | |
| PLN03230 | 431 | acetyl-coenzyme A carboxylase carboxyl transferase | 100.0 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 100.0 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 100.0 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 100.0 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 100.0 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 100.0 | |
| PRK05654 | 292 | acetyl-CoA carboxylase subunit beta; Validated | 100.0 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 100.0 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 100.0 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 100.0 | |
| TIGR00515 | 285 | accD acetyl-CoA carboxylase, carboxyl transferase, | 100.0 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subun | 100.0 | |
| KOG0540|consensus | 536 | 100.0 | ||
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 100.0 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit | 100.0 | |
| CHL00174 | 296 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 100.0 | |
| PRK07189 | 301 | malonate decarboxylase subunit beta; Reviewed | 100.0 | |
| PF03255 | 145 | ACCA: Acetyl co-enzyme A carboxylase carboxyltrans | 100.0 | |
| KOG0540|consensus | 536 | 99.98 | ||
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 99.97 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid me | 99.95 | |
| PF06833 | 234 | MdcE: Malonate decarboxylase gamma subunit (MdcE); | 99.68 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficienc | 99.13 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 99.11 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 99.11 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 99.05 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 99.04 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 99.04 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 99.04 | |
| KOG0016|consensus | 266 | 99.03 | ||
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 99.01 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 99.01 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 99.01 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 99.01 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 99.01 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 99.01 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 99.0 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 99.0 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 99.0 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 98.99 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 98.99 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 98.98 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 98.97 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 98.97 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 98.97 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 98.97 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 98.96 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 98.96 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 98.95 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 98.95 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 98.94 | |
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy | 98.94 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 98.94 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 98.94 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 98.94 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 98.93 | |
| PLN02600 | 251 | enoyl-CoA hydratase | 98.92 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 98.92 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 98.92 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 98.92 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 98.92 | |
| PRK05870 | 249 | enoyl-CoA hydratase; Provisional | 98.91 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 98.91 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 98.9 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 98.9 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 98.89 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 98.89 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 98.89 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 98.89 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation effici | 98.89 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 98.88 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 98.88 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 98.87 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 98.87 | |
| PRK05864 | 276 | enoyl-CoA hydratase; Provisional | 98.87 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 98.86 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 98.86 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 98.86 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 98.86 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 98.85 | |
| KOG0368|consensus | 2196 | 98.84 | ||
| PLN02888 | 265 | enoyl-CoA hydratase | 98.83 | |
| cd07016 | 160 | S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- | 98.83 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 98.81 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 98.81 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 98.81 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 98.8 | |
| PRK07827 | 260 | enoyl-CoA hydratase; Provisional | 98.78 | |
| TIGR03200 | 360 | dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy | 98.78 | |
| PRK06072 | 248 | enoyl-CoA hydratase; Provisional | 98.77 | |
| PRK05617 | 342 | 3-hydroxyisobutyryl-CoA hydrolase; Provisional | 98.77 | |
| PLN02267 | 239 | enoyl-CoA hydratase/isomerase family protein | 98.76 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 98.76 | |
| PRK08272 | 302 | enoyl-CoA hydratase; Provisional | 98.76 | |
| PLN02921 | 327 | naphthoate synthase | 98.75 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency | 98.75 | |
| PRK08290 | 288 | enoyl-CoA hydratase; Provisional | 98.74 | |
| KOG1680|consensus | 290 | 98.73 | ||
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 98.73 | |
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptid | 98.71 | |
| PLN02874 | 379 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 98.7 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 98.66 | |
| cd00394 | 161 | Clp_protease_like Caseinolytic protease (ClpP) is | 98.65 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.64 | |
| PLN02157 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 98.6 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 98.56 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.54 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 98.5 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.48 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.47 | |
| PRK12553 | 207 | ATP-dependent Clp protease proteolytic subunit; Re | 98.43 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.43 | |
| PRK00277 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.42 | |
| cd07023 | 208 | S49_Sppa_N_C Signal peptide peptidase A (SppA), a | 98.41 | |
| cd07013 | 162 | S14_ClpP Caseinolytic protease (ClpP) is an ATP-de | 98.4 | |
| PRK10660 | 436 | tilS tRNA(Ile)-lysidine synthetase; Provisional | 98.37 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 98.37 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 98.29 | |
| PF00574 | 182 | CLP_protease: Clp protease; InterPro: IPR001907 In | 98.28 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 98.28 | |
| PRK14512 | 197 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.28 | |
| CHL00028 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.27 | |
| PRK12551 | 196 | ATP-dependent Clp protease proteolytic subunit; Re | 98.24 | |
| cd07022 | 214 | S49_Sppa_36K_type Signal peptide peptidase A (SppA | 98.23 | |
| PRK14514 | 221 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.21 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 98.19 | |
| TIGR00493 | 191 | clpP ATP-dependent Clp protease, proteolytic subun | 98.16 | |
| cd07017 | 171 | S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- | 98.15 | |
| TIGR00706 | 207 | SppA_dom signal peptide peptidase SppA, 36K type. | 98.12 | |
| PRK14513 | 201 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.07 | |
| COG1030 | 436 | NfeD Membrane-bound serine protease (ClpP class) [ | 97.99 | |
| COG0037 | 298 | MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle | 97.99 | |
| COG0447 | 282 | MenB Dihydroxynaphthoic acid synthase [Coenzyme me | 97.98 | |
| COG0616 | 317 | SppA Periplasmic serine proteases (ClpP class) [Po | 97.93 | |
| cd07018 | 222 | S49_SppA_67K_type Signal peptide peptidase A (SppA | 97.9 | |
| COG0740 | 200 | ClpP Protease subunit of ATP-dependent Clp proteas | 97.88 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a se | 97.87 | |
| PRK12552 | 222 | ATP-dependent Clp protease-like protein; Reviewed | 97.79 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 97.71 | |
| PRK11778 | 330 | putative inner membrane peptidase; Provisional | 97.67 | |
| KOG0840|consensus | 275 | 97.65 | ||
| PF01972 | 285 | SDH_sah: Serine dehydrogenase proteinase; InterPro | 97.64 | |
| KOG1682|consensus | 287 | 97.47 | ||
| KOG0368|consensus | 2196 | 97.41 | ||
| cd01986 | 103 | Alpha_ANH_like Adenine nucleotide alpha hydrolases | 97.3 | |
| PRK10696 | 258 | tRNA 2-thiocytidine biosynthesis protein TtcA; Pro | 97.22 | |
| KOG1681|consensus | 292 | 97.18 | ||
| PRK10949 | 618 | protease 4; Provisional | 95.86 | |
| PF01343 | 154 | Peptidase_S49: Peptidase family S49 peptidase clas | 95.79 | |
| KOG1679|consensus | 291 | 95.73 | ||
| TIGR00884 | 311 | guaA_Cterm GMP synthase (glutamine-hydrolyzing), C | 95.18 | |
| PRK00074 | 511 | guaA GMP synthase; Reviewed | 94.27 | |
| PRK00919 | 307 | GMP synthase subunit B; Validated | 93.43 | |
| cd01996 | 154 | Alpha_ANH_like_III This is a subfamily of Adenine | 91.49 | |
| TIGR00268 | 252 | conserved hypothetical protein TIGR00268. The N-te | 90.83 | |
| PRK05253 | 301 | sulfate adenylyltransferase subunit 2; Provisional | 87.94 | |
| TIGR02039 | 294 | CysD sulfate adenylyltransferase, small subunit. I | 87.26 | |
| KOG1684|consensus | 401 | 84.47 | ||
| TIGR00552 | 250 | nadE NAD+ synthetase. NAD+ synthetase is a nearly | 83.8 | |
| PLN02347 | 536 | GMP synthetase | 83.11 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 82.9 | |
| TIGR03573 | 343 | WbuX N-acetyl sugar amidotransferase. This enzyme | 82.48 | |
| PRK12563 | 312 | sulfate adenylyltransferase subunit 2; Provisional | 80.68 | |
| PRK08576 | 438 | hypothetical protein; Provisional | 80.51 |
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=476.36 Aligned_cols=269 Identities=64% Similarity=1.059 Sum_probs=258.9
Q ss_pred CCccccchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhc
Q psy14493 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIF 80 (318)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~ 80 (318)
||.++||||+||.+++++|++|+........+..++|.++++++++++++||.+||+|||+++++||++||++++|+.+|
T Consensus 1 ~~~~~l~fe~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~w~~v~~ar~~~Rp~~~d~I~~l~ 80 (319)
T PRK05724 1 MMLNYLDFEKPIAELEAKIEELRAVAEDSDVDLSEEIERLEKKLEELTKKIYSNLTPWQKVQLARHPQRPYTLDYIELLF 80 (319)
T ss_pred CCcchhhhhhHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcCCCHHHhhhcccCCCCCCHHHHHHHHh
Confidence 67899999999999999999999876655667778999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy14493 81 TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDT 160 (318)
Q Consensus 81 d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs 160 (318)
|+|.|++|++.|+||+++|||+|+|||+||+|++||++.+++++..+++|++++++++|+.|++++|++|++|||+|+||
T Consensus 81 d~f~El~gdr~~~dd~aiV~G~ari~GrpV~VIa~d~g~~~~e~~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDT 160 (319)
T PRK05724 81 TDFTELHGDRAFADDKAIVGGLARLNGRPVMVIGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDT 160 (319)
T ss_pred hHHHHHcCCcCCCCCCceEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccc
Q psy14493 161 PGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240 (318)
Q Consensus 161 ~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~ 240 (318)
||++++.++|..|+.+++++++.+++..+||+|+||+|+|+|||+++++.+|+++|||+|.+++++||+|++|+|++...
T Consensus 161 pGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~svisPEg~a~Il~~~~~~ 240 (319)
T PRK05724 161 PGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYSVISPEGCASILWKDASK 240 (319)
T ss_pred CCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeeecCceEeecCHHHHHHHHhcCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hHHHHHHhcccHHHHHHcCCcceeecCcc
Q psy14493 241 ASDAAEALGLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 241 ~~~a~e~~~~~a~~a~~~G~vD~ii~~p~ 269 (318)
++++++.+++||+++++.|+||+||++|.
T Consensus 241 a~~aae~~~ita~~l~~~g~iD~II~Ep~ 269 (319)
T PRK05724 241 APEAAEAMKITAQDLKELGIIDEIIPEPL 269 (319)
T ss_pred HHHHHHHcCCCHHHHHHCCCceEeccCCC
Confidence 88899999999999999999999999985
|
|
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=469.65 Aligned_cols=269 Identities=59% Similarity=0.992 Sum_probs=258.1
Q ss_pred CCccccchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhc
Q psy14493 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIF 80 (318)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~ 80 (318)
||..+||||+||.+++++|++|+........+..++|.++++++++++++||.+||+|||+++.+||++||++++|..+|
T Consensus 1 ~m~~~~~fe~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~w~~v~~ar~~~Rp~~~d~i~~l~ 80 (316)
T TIGR00513 1 MMANYLDFEKPIAELEAKIESLRARSRDEDVDLSEEIERLEKRSVELTKKIFSNLGAWQRLQLARHPDRPYTLDYIELIF 80 (316)
T ss_pred CCcchhhhhHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCchHHHHHHHh
Confidence 78889999999999999999998877665666777999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy14493 81 TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDT 160 (318)
Q Consensus 81 d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs 160 (318)
|+|.|++++..|+||+++|||+|+|+|+||+|++||++.+++++..+++|++++.+++|+.|++++|+++++|||+|+||
T Consensus 81 d~f~EL~gd~~~~dd~aiVtG~ari~GrpV~VIa~d~g~~~~e~~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDT 160 (316)
T TIGR00513 81 DDFFELAGDRAYADDKAIVGGIARLDGRPVVVIGHQKGRDTKEKLRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDT 160 (316)
T ss_pred hhheeeccccCCCCCCceEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 99999999988999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred CCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccc
Q psy14493 161 PGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240 (318)
Q Consensus 161 ~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~ 240 (318)
||++++.++|..|+..++++++.+++..+||+||||+|+|+||||++++.+|+++||++|.++|++||+|++|+|++...
T Consensus 161 pGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~sVisPEg~a~Il~kd~~~ 240 (316)
T TIGR00513 161 PGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYSVISPEGCAAILWKDASK 240 (316)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEecCceEEecCHHHHHHHhccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hHHHHHHhcccHHHHHHcCCcceeecCcc
Q psy14493 241 ASDAAEALGLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 241 ~~~a~e~~~~~a~~a~~~G~vD~ii~~p~ 269 (318)
++++++.++++|.+++++|+||+||++|.
T Consensus 241 a~~aae~~~~ta~~l~~~G~iD~II~ep~ 269 (316)
T TIGR00513 241 APKAAEAMKITAPDLKELGLIDSIIPEPL 269 (316)
T ss_pred HHHHHHHccCCHHHHHHCCCCeEeccCCC
Confidence 88888999999999999999999999985
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-64 Score=467.41 Aligned_cols=269 Identities=48% Similarity=0.834 Sum_probs=258.2
Q ss_pred CCccccchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhc
Q psy14493 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIF 80 (318)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~ 80 (318)
|+.++||||+||.+++.+|++|+........+..++|.++++++++++++||.+||+|||+++.++|+||+..++|+.+|
T Consensus 4 ~~~~~l~fe~~i~el~~~i~~l~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~w~~v~~aR~~~Rp~~~d~i~~l~ 83 (322)
T CHL00198 4 RKPHVPDFMKPLAELESQVEELSKLAPKNDKVINNKLKSFQRKLRILKKEIFYSLTPLQRLHLVRQSERPTTLDYIPYIL 83 (322)
T ss_pred ccccccchhhhHHHHHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 44467999999999999999999877665677778999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy14493 81 TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDT 160 (318)
Q Consensus 81 d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs 160 (318)
|+|.|++|++.|+||+++|+|+|+|||+||+|++||++.+++++..+++|++++.+++|+.|++++|+++++|||+|+||
T Consensus 84 d~f~El~gd~~~~dd~avV~Glgri~GrpV~VIa~dkg~~~~e~~~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDT 163 (322)
T CHL00198 84 DEWIELHGDRGGSDDPALVGGIGKINGRTIVFLGHQRGRNTKENVLRNFGMPSPGGYRKALRLMKHANKFGLPILTFIDT 163 (322)
T ss_pred HHHHHHccccccCCCCceEEEEEEECCEEEEEEEecCCccchhhhhhcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999988899999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccc
Q psy14493 161 PGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240 (318)
Q Consensus 161 ~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~ 240 (318)
||++++.++|..|+...+++++.+++..+||+||||+|+|+|||||+++.+|+++||++|+++|++||+|++|+|++..+
T Consensus 164 pGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~sVisPEg~a~Il~~d~~~ 243 (322)
T CHL00198 164 PGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTVATPEACAAILWKDSKK 243 (322)
T ss_pred CCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEecCHHHHHHHHhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcccHHHHHHcCCcceeecCcc
Q psy14493 241 ASDAAEALGLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 241 ~~~a~e~~~~~a~~a~~~G~vD~ii~~p~ 269 (318)
++++++.+++|+.++++.|+||+||++|.
T Consensus 244 a~~aA~~~~ita~dL~~~giiD~ii~Ep~ 272 (322)
T CHL00198 244 SLDAAEALKITSEDLKVLGIIDEIIPEPI 272 (322)
T ss_pred HHHHHHHcCCCHHHHHhCCCCeEeccCCC
Confidence 99999999999999999999999999985
|
|
| >COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=461.12 Aligned_cols=268 Identities=61% Similarity=1.027 Sum_probs=262.3
Q ss_pred CccccchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhcc
Q psy14493 2 KNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFT 81 (318)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d 81 (318)
|.+++|||+++.+++.+|++|....+....+..+.|+++++++.+++++||.+||+|||+++.+||+||+.+||++.+|+
T Consensus 1 ~~~~ldfEkpi~ele~kI~~l~~~~~~~~~~~~~eI~~Le~~~~~~~~~iy~~L~~wq~~q~ARhp~RP~tldyi~~i~~ 80 (317)
T COG0825 1 MANYLDFEKPIAELEAKIDELKALAEENDVDLSDEIERLEKRLAELTKKIYSNLTPWQRVQLARHPDRPYTLDYIELLFT 80 (317)
T ss_pred CCCcchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHhhHHHHhhhhhccCCHHHHHHHhhCCCCCcHHHHHHHHHh
Confidence 47899999999999999999999887777788889999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy14493 82 DIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTP 161 (318)
Q Consensus 82 ~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~ 161 (318)
+|.|++||+.|+||+++|.|+||++|+||+|++++++.++++++.+|+|+..|++|||+.|+|++|++|++|||+|+||+
T Consensus 81 df~eL~GDR~f~dD~Aivgglar~~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~ 160 (317)
T COG0825 81 DFVELHGDRAFADDPAIVGGLARFGGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTP 160 (317)
T ss_pred HHHHhcCccccCcChhheeeeeeECCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccch
Q psy14493 162 GAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241 (318)
Q Consensus 162 Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~~ 241 (318)
|++||.++|++||..+|++++..|+.+.||+||+|+|++.+|||++++.+|.|+|.++|.++|++||||++|+|++..++
T Consensus 161 GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySVisPEG~AsILWkD~~ka 240 (317)
T COG0825 161 GAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSVISPEGCASILWKDASKA 240 (317)
T ss_pred CCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeeecChhhhhhhhhcChhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccHHHHHHcCCcceeecCcc
Q psy14493 242 SDAAEALGLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 242 ~~a~e~~~~~a~~a~~~G~vD~ii~~p~ 269 (318)
+++++.|++++.+++++|+||.||++|.
T Consensus 241 ~eAAe~mkita~dLk~lgiID~II~Ep~ 268 (317)
T COG0825 241 KEAAEAMKITAHDLKELGIIDGIIPEPL 268 (317)
T ss_pred HHHHHHcCCCHHHHHhCCCcceeccCCC
Confidence 9999999999999999999999999987
|
|
| >PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-63 Score=471.48 Aligned_cols=268 Identities=49% Similarity=0.823 Sum_probs=257.5
Q ss_pred CccccchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhcc
Q psy14493 2 KNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFT 81 (318)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d 81 (318)
++++||||+||.+|+++|++|+........+..++|.++++++.+++++||.+||+|||+++.+||+||+..|||..+||
T Consensus 72 ~~~~l~fe~pi~ele~ki~el~~~~~~~~~~~~~ei~~l~~~~~~~~~~i~~~Lt~wq~vq~aRhp~RP~~~d~I~~i~d 151 (431)
T PLN03230 72 KPVTLPFEKPIVDLENRIDEVRELANKTGVDFSAQIAELEERYDQVRRELYSRLTPVQRLSVARHPNRPTFLDHVLNMTD 151 (431)
T ss_pred CCCccchhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCHHHHHHHhhh
Confidence 35799999999999999999998776556677789999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy14493 82 DIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTP 161 (318)
Q Consensus 82 ~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~ 161 (318)
+|.|++|++.|+||+++|||+|+|+|+||+|++||++++++++..+++|++++++++|+.|++++|++|++|||+|+||+
T Consensus 152 df~EL~Gdr~~~dD~aIVtG~grI~GrpV~VIandkg~~~ke~~~rnfG~~~peGyRKAlR~mklAekf~lPIVtLVDTp 231 (431)
T PLN03230 152 KWVELHGDRAGFDDPAIVCGIGSMEGMSFMFIGHQKGRNTKENIYRNFAMPQPNGYRKALRFMRHAEKFGFPILTFVDTP 231 (431)
T ss_pred HHhhhcCcccCCCCCCeEEEEEEECCEEEEEEEeccCcccccccccCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred CCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccch
Q psy14493 162 GAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241 (318)
Q Consensus 162 Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~~ 241 (318)
|++++.++|..|+..++++++.+++.++||+|+||+|+|+||||++++.+|+++||++|.+++++|++|++|+|++...+
T Consensus 232 GA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~ysVisPEgaAsILwkd~~~A 311 (431)
T PLN03230 232 GAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYVASPEACAAILWKSAAAA 311 (431)
T ss_pred CcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEecCHHHHHHHHhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhcccHHHHHHcCCcceeecCcc
Q psy14493 242 SDAAEALGLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 242 ~~a~e~~~~~a~~a~~~G~vD~ii~~p~ 269 (318)
+++++.+++||.+++++|+||+||++|.
T Consensus 312 ~eAAealkitA~dL~~~GiID~II~Ep~ 339 (431)
T PLN03230 312 PKAAEALRITAAELVKLGVVDEIVPEPL 339 (431)
T ss_pred HHHHHHcCCCHHHHHhCCCCeEeccCCC
Confidence 8999999999999999999999999985
|
|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-61 Score=479.32 Aligned_cols=267 Identities=49% Similarity=0.795 Sum_probs=257.4
Q ss_pred ccccchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhccc
Q psy14493 3 NIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTD 82 (318)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d~ 82 (318)
+.+||||+||.+++.+|++|+........+..++|.++++++.+++++||.+|||||||++++||+||+..||+..+|++
T Consensus 94 ~~~ldfEkpi~ele~ki~el~~~~~~~~~~~~~ei~~Le~k~~~~~~~iy~~LT~werV~~aR~p~RP~~~Dyi~~i~dd 173 (762)
T PLN03229 94 PVTLDFEKPLVDLEKKIVDVRKMANETGLDFSDQIISLESKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHIFNITDK 173 (762)
T ss_pred CCCcchhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 56999999999999999999987665566777899999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy14493 83 IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPG 162 (318)
Q Consensus 83 ~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~G 162 (318)
|.|++|++.|+||+++|||+|+|||+||+|+++|+++++++++.+++|++++.+++|+.|++++|++|++|||+|+||||
T Consensus 174 f~EL~Gdr~~~dD~aIVtGlGRIdGrpV~VIAndkg~~tke~~~rnfG~~~peGyRKAlRlmkLAekfgLPIVtLVDTpG 253 (762)
T PLN03229 174 FVELHGDRAGYDDPAIVTGIGTIDGKRYMFIGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 253 (762)
T ss_pred HHHhcCcccCCCCCCeEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 99999998888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccchH
Q psy14493 163 AFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRAS 242 (318)
Q Consensus 163 a~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~~~ 242 (318)
++++.++|..|+.+++++++.+++..+||+|+||+|+|+|||||+++++|+++||++|+|+++||++|++|+|++...++
T Consensus 254 A~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~A~~sVisPEgaAsILwkd~~~A~ 333 (762)
T PLN03229 254 AYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKAAP 333 (762)
T ss_pred cCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecCCeEEecCHHHHHHHHhcCcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHcCCcceeecCcc
Q psy14493 243 DAAEALGLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 243 ~a~e~~~~~a~~a~~~G~vD~ii~~p~ 269 (318)
++++.+++||.++.++|+||+||++|.
T Consensus 334 eAAe~lkiTa~dL~~lGiiD~IIpEp~ 360 (762)
T PLN03229 334 KAAEKLRITAQELCRLQIADGIIPEPL 360 (762)
T ss_pred HHHHHcCCCHHHHHhCCCCeeeccCCC
Confidence 999999999999999999999999985
|
|
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-50 Score=366.10 Aligned_cols=214 Identities=52% Similarity=0.858 Sum_probs=204.6
Q ss_pred CCHHHHHHhhcCCCCCchhhHHhhhcccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCH
Q psy14493 55 LTPWQISQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKP 134 (318)
Q Consensus 55 ltareRi~~~~d~~~~~~~~~i~~~~d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~ 134 (318)
.++||++++.+++++|..+++|+.+||+|.|+++++.|++|.++|||+|+|||+||+|++||++.+++++..+++|++++
T Consensus 2 ~~~~~~v~~ar~~~r~~are~I~~L~D~F~El~g~~~~~~d~~vItG~gri~Gr~V~via~~~~~~~~d~~~~~~G~~~~ 81 (256)
T PRK12319 2 TDVARILKEARDQGRLTTLDYATLIFDDFMELHGDRHFRDDGAVVGGIGYLAGQPVTVVGIQKGKNLQDNLKRNFGQPHP 81 (256)
T ss_pred CCHHHHHHHhccCCCCCHHHHHHHhCchheeccCCCCCCCCCcEEEEEEEECCEEEEEEEeccCCccccceeeeCCCCCH
Confidence 46999999999999999999999999999999988788877789999999999999999999998777777789999999
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEE
Q psy14493 135 EGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDIT 214 (318)
Q Consensus 135 ~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~v 214 (318)
.+++|+.|++++|+++++|||+|+||||++++.++|..|+.+.+++++.++++.+||+|++|+|+|+|||+|+++.+|++
T Consensus 82 ~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v 161 (256)
T PRK12319 82 EGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQV 161 (256)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEE
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred EEEcccEEEEeChhHHHHhhhccccchHHHHHHhcccHHHHHHcCCcceeecCc
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEP 268 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a~~a~~~G~vD~ii~~p 268 (318)
+|||++.+++++||++++|+|++...++++++.++++|++++++|+||+||++|
T Consensus 162 ~m~~~a~~~v~~pe~~a~il~~~~~~a~~aa~~~~~~a~~l~~~g~iD~ii~e~ 215 (256)
T PRK12319 162 WMLENTMYAVLSPEGFASILWKDGSRATEAAELMKITAGELLEMGVVDKVIPEH 215 (256)
T ss_pred EEecCceEEEcCHHHHHHHHhcCcccHHHHHHHcCCCHHHHHHCCCCcEecCCC
Confidence 999999999999999999999998888888999999999999999999999976
|
|
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=334.36 Aligned_cols=225 Identities=26% Similarity=0.434 Sum_probs=200.7
Q ss_pred HhhcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHH
Q psy14493 62 QIARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYR 138 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~ 138 (318)
.+|.|+++|||+ ++|.++||+ |.|++. .|+ +++||||+||+|+||+||||++. +++|.|+++++.
T Consensus 279 ivP~d~~~pYDvrevI~rl~D~~~F~E~~~--~~a--~~iV~GfaRi~G~pVGiIANqp~--------~~~G~l~~~sa~ 346 (526)
T COG4799 279 IVPDDPRKPYDVREVIARLVDDGEFLEFKA--GYA--KNIVTGFARIDGRPVGIIANQPR--------HLGGVLDIDSAD 346 (526)
T ss_pred cCCCCCCccccHHHHHHHhcCCccHHHHHh--hhC--cceEEEEEEECCEEEEEEecCcc--------ccccccchHHHH
Confidence 578999999996 899999995 999984 499 79999999999999999999999 599999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccEE
Q psy14493 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV----SDIT 214 (318)
Q Consensus 139 K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~----~D~v 214 (318)
|++||+++|+.++||||+|+|+|||.+|...|..|++++.++++.+++.++||+|++|+|+++|||.|+|+. +||+
T Consensus 347 KaArFI~~cd~~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~ 426 (526)
T COG4799 347 KAARFIRLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFN 426 (526)
T ss_pred HHHHHHHhhhccCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCcee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999863 8999
Q ss_pred EEEcccEEEEeChhHHHHhhhccccchH----H-H--------HHHh--cccHHHHHHcCCcceeecCccccCCCCchHH
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKRAS----D-A--------AEAL--GLTADKLKSIGLINKIIKEPIAYSGGIDSSV 279 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~~~----~-a--------~e~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ 279 (318)
+|||+|+++||||++++++++++..... + . .++. ..+|+.+.++|+||.||+ |. |+|.
T Consensus 427 ~AwP~a~iaVMG~egAv~i~~~k~l~~~~~~~~~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~-p~------~tR~ 499 (526)
T COG4799 427 YAWPTAEIAVMGPEGAVSILYRKELAAAERPEEREALLRKQLIAEYEEQFSNPYYAAERGYIDAVID-PA------DTRA 499 (526)
T ss_pred EecCcceeeecCHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHhccchHHHHHhCCCCcccC-HH------HHHH
Confidence 9999999999999999999997644211 1 0 1111 158999999999999999 88 9999
Q ss_pred HHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 280 LLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 280 ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
.|+..++....++. ...+-..|+++|
T Consensus 500 ~L~~~l~~~~~k~~-~~~~~kk~g~~~ 525 (526)
T COG4799 500 VLGRALSALANKPV-VETPLKKHGNIP 525 (526)
T ss_pred HHHHHHHHHhcCcc-ccccccccCCCC
Confidence 99999998887643 345667798875
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=322.90 Aligned_cols=224 Identities=26% Similarity=0.434 Sum_probs=197.2
Q ss_pred HhhcCCCCCchh-hHHhhhcc--cccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHH
Q psy14493 62 QIARHPKRPYTL-DYIREIFT--DIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYR 138 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d--~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~ 138 (318)
.+|.|+.+||++ ++|+.++| .|.|+++ .|+ +++|||+|+|+|+||+|++||++ +++|++++.+++
T Consensus 270 ~iP~~~~~~~d~r~~i~~l~D~~sf~El~~--~~g--~~vVtG~gri~G~~V~vvAnd~~--------~~~G~~~~~~~~ 337 (512)
T TIGR01117 270 LLPDNPNKPYDMRDVITAIVDNGDYLEVQP--YYA--PNIITCFARINGQSVGIIANQPK--------VMAGCLDIDSSD 337 (512)
T ss_pred hCCCCCCCCCCHHHHHHHhCCCCceEEeec--cCC--CcEEEEEEEECCEEEEEEEeccc--------cccCCCCHHHHH
Confidence 368899999995 89999999 4999985 477 69999999999999999999999 499999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccEE
Q psy14493 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV----SDIT 214 (318)
Q Consensus 139 K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~----~D~v 214 (318)
|++|++++|+++++|||+|+||+|+.++..+|..|+..++++++.+++..+||+|++|+|+|+|||+++++. +|++
T Consensus 338 K~~r~i~~a~~~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~ 417 (512)
T TIGR01117 338 KIARFIRFCDAFNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQV 417 (512)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999998887753 8999
Q ss_pred EEEcccEEEEeChhHHHHhhhccccch---HH-H-----HHHh--cccHHHHHHcCCcceeecCccccCCCCchHHHHHH
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKRA---SD-A-----AEAL--GLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLDI 283 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~~---~~-a-----~e~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~ 283 (318)
+|||+|++++|||++++.++|+++... ++ + .++. ..+|+.+.++|+||.||+ |. |+|..|..
T Consensus 418 ~a~p~a~~~v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~-P~------~tR~~l~~ 490 (512)
T TIGR01117 418 YAWPTAEIAVMGPAGAANIIFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVIE-PK------QTRPKIVN 490 (512)
T ss_pred EEcCCCeEeecCHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeEC-hH------HHHHHHHH
Confidence 999999999999999999999875321 11 1 1111 258999999999999999 88 99999999
Q ss_pred HHHHhhccCccccccCCCCCCCC
Q psy14493 284 SFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
+++++..... ..++.+|+++|
T Consensus 491 ~l~~~~~~~~--~~~~~~~~~~p 511 (512)
T TIGR01117 491 ALAMLESKRE--KLPPKKHGNIP 511 (512)
T ss_pred HHHHHhcCcc--cCCCCCCCCCC
Confidence 9998766443 35778899886
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=319.61 Aligned_cols=233 Identities=20% Similarity=0.196 Sum_probs=188.6
Q ss_pred cccchhhhHHHHHHHHHHHHhhhhhcCCCcHH-HHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCC-CchhhHHhhhcc
Q psy14493 4 IFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSK-EINDLVKKCNKLTEEIYSKLTPWQISQIARHPKR-PYTLDYIREIFT 81 (318)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~-~~~~~~i~~~~d 81 (318)
+...|++|.+.|++++++|+++++....+|++ +++|||++ ||||+||||+.++|+++ |.+++-+..
T Consensus 39 ~~~~~~~n~~~~~~~~~~l~~~~~~~~~~gg~~~v~r~~~~---------gkltaReRI~~LlD~gS~F~El~~lag--- 106 (569)
T PLN02820 39 NSDAFSANSKAMEGLLSELRSHVAKVRAGGGPEAVKRHRSR---------NKLLPRERIDRLLDPGSPFLELSQLAG--- 106 (569)
T ss_pred CCHHHHhCHHHHHHHHHHHHHHHHHHHhcCCHhHHHhhhhc---------CCCCHHHHHHHHcCCCCCeEEchhhcc---
Confidence 45579999999999999999998887666555 89999999 99999999999999999 554432110
Q ss_pred cccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy14493 82 DIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTP 161 (318)
Q Consensus 82 ~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~ 161 (318)
+. ...++.++ +++|||+|+|||++|+|++||++ ++||++++.+++|+.|++++|.++++|||+|+||+
T Consensus 107 -~~-~y~~~~~~--dgVVtG~G~V~Gr~V~v~a~D~t--------v~GGs~g~~~~~Ki~r~~elA~~~~lPlV~l~DSg 174 (569)
T PLN02820 107 -HE-LYGEDLPS--GGIVTGIGPVHGRLCMFVANDPT--------VKGGTYYPITVKKHLRAQEIAAQCRLPCIYLVDSG 174 (569)
T ss_pred -CC-cccccCCC--CeEEEEEEEECCEEEEEEEECCC--------ccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 00 00123344 59999999999999999999999 49999999999999999999999999999999999
Q ss_pred CCCCchhHHhhc---hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHHhhhcc
Q psy14493 162 GAFPGIDAEERG---QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCASILWKT 237 (318)
Q Consensus 162 Ga~~~~~~e~~g---~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~il~~~ 237 (318)
|++++.+.|.+. +++.+++.+..+++.+||+|++|+|+|+|||+|.++++|+++|+++ ++|+++||+......-..
T Consensus 175 Garl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~aGP~vV~~~~Ge~ 254 (569)
T PLN02820 175 GANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLAGPPLVKAATGEE 254 (569)
T ss_pred CcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEecCHHHHHhhcCcc
Confidence 999977666553 4578899999999888999999999999999999999999999986 999999998755444322
Q ss_pred ccchHHHHHHhcccHHHHH-HcCCcceeec
Q psy14493 238 SKRASDAAEALGLTADKLK-SIGLINKIIK 266 (318)
Q Consensus 238 ~~~~~~a~e~~~~~a~~a~-~~G~vD~ii~ 266 (318)
...++ + -++.... ..|.+|-+.+
T Consensus 255 -v~~ee----L-GGa~~h~~~sGv~d~~~~ 278 (569)
T PLN02820 255 -VSAED----L-GGADVHCKVSGVSDHFAQ 278 (569)
T ss_pred -cCHHH----h-CCHHHhcccccccccccC
Confidence 11222 1 2333222 4788888875
|
|
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=285.88 Aligned_cols=214 Identities=15% Similarity=0.099 Sum_probs=178.9
Q ss_pred cCCCCHHHHHHhhcCCCCCchhhH-Hhhhcc--cccc----------cccCCccCCCCcEEEEEEEEcCEEEEEEeecCC
Q psy14493 52 YSKLTPWQISQIARHPKRPYTLDY-IREIFT--DIHE----------LHGDRNYGDDLSIIGVLARINGESCMVIGHQKG 118 (318)
Q Consensus 52 ~~~ltareRi~~~~d~~~~~~~~~-i~~~~d--~~~e----------l~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~ 118 (318)
|-+||+||||+.+.|+++|.+++- +... | +|.. .... .+.++++|||+|+|||++|+|+++|++
T Consensus 55 h~rl~areRi~~L~D~gsF~E~~~~~~~~-d~l~f~~~~~Y~~~l~~~~~~--t~~~d~vVtG~g~I~G~~V~v~a~D~~ 131 (292)
T PRK05654 55 HMRISARERLDLLLDEGSFVELDAELEPK-DPLKFRDSKKYKDRLKAAQKK--TGLKDAVVTGKGTIEGMPVVLAVMDFS 131 (292)
T ss_pred CeeCCHHHHHHHHccCCccEEecCccccC-CcccCCcccccchHHHHhhhc--cCCCCcEEEEEEEECCEEEEEEEEecc
Confidence 478999999999999999888752 3221 1 1211 0111 122369999999999999999999999
Q ss_pred CCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 119 RNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 119 ~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
++||+++..+++|++|++++|.++++|||+|+||+|++++++.-.+.++.+++..+.+++..+||+|+||+|
T Consensus 132 --------f~gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~g 203 (292)
T PRK05654 132 --------FMGGSMGSVVGEKIVRAVERAIEEKCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTD 203 (292)
T ss_pred --------cccCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 599999999999999999999999999999999999999998888888888999999999989999999999
Q ss_pred CCchhhhhhhcc-ccEEEEEcccEEEEeChhHHHHhhhccccchHHHHHHhcccHHHHHHcCCcceeecCccccCCCCch
Q psy14493 199 EGGSGGALAIAV-SDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPIAYSGGIDS 277 (318)
Q Consensus 199 ~~~ggga~~~~~-~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds 277 (318)
+|+||+++.+++ +|+++|||+|.|+++||+.....+.. +..+. ..+++.+.++|+||.|++ |. |+
T Consensus 204 pt~GG~aas~a~~~D~iia~p~A~ig~aGprvie~~~~e------~lpe~-~~~ae~~~~~G~vD~Vv~-~~------e~ 269 (292)
T PRK05654 204 PTTGGVSASFAMLGDIIIAEPKALIGFAGPRVIEQTVRE------KLPEG-FQRAEFLLEHGAIDMIVH-RR------EL 269 (292)
T ss_pred CCchHHHHHHHHcCCEEEEecCcEEEecCHHHHHhhhhh------hhhhh-hcCHHHHHhCCCCcEEEC-HH------HH
Confidence 999999888764 99999999999999999876544421 11111 368899999999999999 77 99
Q ss_pred HHHHHHHHHHhhc
Q psy14493 278 SVLLDISFTLFCN 290 (318)
Q Consensus 278 ~~ll~~~~~l~~~ 290 (318)
+..|..+++++..
T Consensus 270 r~~l~~~L~~~~~ 282 (292)
T PRK05654 270 RDTLASLLALHTK 282 (292)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998754
|
|
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=303.39 Aligned_cols=248 Identities=17% Similarity=0.174 Sum_probs=203.5
Q ss_pred chhhhHHHHHHHHHHHHhhhhhcCCCcHH-HHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHH-hhhccccc
Q psy14493 7 NFEEPIIKLEKKIEKLRSLQFSSNIDTSK-EINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYI-REIFTDIH 84 (318)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i-~~~~d~~~ 84 (318)
+|..+...+..++++++++++....++++ +++++|++ ||||+||||+.++|||+|.+++.+ ..-.
T Consensus 3 ~~~~~~~~~~~~~~e~~~~~~~~~~~gg~~~~~~~~~~---------GkltaReRv~~LlD~Gsf~El~~~a~~~~---- 69 (526)
T COG4799 3 AFGMVAMTMAEKVAELRERRAIAVAGGGEKAVEKQHGK---------GKLTARERVELLLDPGSFLELGALAGHRM---- 69 (526)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhcCCHHHhhhcccc---------CcCcHHHHHHHHcCCCchhhhhhhhhccc----
Confidence 47788899999999999999887766666 89999999 999999999999999997766432 2111
Q ss_pred ccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy14493 85 ELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAF 164 (318)
Q Consensus 85 el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~ 164 (318)
+..++..++ +++|||+|+||||+|+|++||+|+ +||++++.+++|+.|++++|.+.++|+|.|+||+|++
T Consensus 70 ~~~~~~~~~--dGvVtG~G~i~Gr~~~v~a~D~TV--------~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGar 139 (526)
T COG4799 70 GGDANELPG--DGVVTGIGTINGRKVFVFANDFTV--------KGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGAR 139 (526)
T ss_pred ccccccCCC--CeeEEeeeeeCCeEEEEEEecCce--------ecccccccccchHHHHHHHHHHcCCCEEEEEcccccc
Confidence 112234466 599999999999999999999995 9999999999999999999999999999999999999
Q ss_pred CchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHHhhhccccchHH
Q psy14493 165 PGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCASILWKTSKRASD 243 (318)
Q Consensus 165 ~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~il~~~~~~~~~ 243 (318)
++++.+.+..++.+|.+...+|+. ||||++|+|+|+|||+|.+++||++||+++ +.|++.||...-.++-.. ...++
T Consensus 140 i~~~v~~l~g~g~iF~~~a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mfltGP~~ik~vtGe~-V~~e~ 217 (526)
T COG4799 140 IQEGVPSLAGYGRIFYRNARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFLTGPPVIKAVTGEE-VSAEE 217 (526)
T ss_pred cccCccccccchHHHHHHHHhccC-CCEEEEEEecCcccccccccccceEEEEcCCccEEeeCHHHHHhhcCcE-eehhh
Confidence 999988888889999999999999 999999999999999999999999999999 999999999766555433 22222
Q ss_pred HHHHhcccHHHHHHc-CCcceeecCccccCCCCchHHHHHHHHHHhhc
Q psy14493 244 AAEALGLTADKLKSI-GLINKIIKEPIAYSGGIDSSVLLDISFTLFCN 290 (318)
Q Consensus 244 a~e~~~~~a~~a~~~-G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~ 290 (318)
.-.+.-..+. |.+|-+.+.-. |...++.+++..+..
T Consensus 218 -----LGGa~vh~~~sGva~~~a~dd~------~Ai~~vr~~lsylp~ 254 (526)
T COG4799 218 -----LGGAQVHARKSGVADLLAEDDE------DAIELVRRLLSYLPS 254 (526)
T ss_pred -----ccchhhhcccccceeeeecCHH------HHHHHHHHHHHhcCc
Confidence 1345555555 88888886333 444444555554443
|
|
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=307.47 Aligned_cols=207 Identities=20% Similarity=0.334 Sum_probs=183.9
Q ss_pred HhhcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHH
Q psy14493 62 QIARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYR 138 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~ 138 (318)
.+|.|+.++||+ ++|+.++|+ |.|++ +.|+ +++|||+|||+|+||+||+|+ |++.+.+++
T Consensus 326 ivP~~~~~~yD~r~vi~~ivD~~sf~E~~--~~~g--~~iVtG~aRi~G~~VgvvAn~-------------g~l~~~~a~ 388 (569)
T PLN02820 326 IVPADHKQSFDVRSVIARIVDGSEFDEFK--KNYG--TTLVTGFARIYGQPVGIIGNN-------------GILFTESAL 388 (569)
T ss_pred ccCCCCCCCCCHHHHHHHhcCCceeEEec--ccCC--CcEEEEEEEECCEEEEEEEEC-------------CccCHHHHH
Confidence 468888999996 899999996 99998 4599 799999999999999999997 567899999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhc----cccEE
Q psy14493 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIA----VSDIT 214 (318)
Q Consensus 139 K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~----~~D~v 214 (318)
|++||+++|+++++|||+|+|||||++|.++|..|+.+++++++.+++..+||+|++|+|+|+|+|+|+|+ .+|++
T Consensus 389 Kaarfi~lc~~~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~ 468 (569)
T PLN02820 389 KGAHFIELCAQRGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFL 468 (569)
T ss_pred HHHHHHHHHHhcCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 48999
Q ss_pred EEEcccEEEEeChhHHHHhhhccccc----------hHHHH-------HHh--cccHHHHHHcCCcceeecCccccCCCC
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKR----------ASDAA-------EAL--GLTADKLKSIGLINKIIKEPIAYSGGI 275 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~----------~~~a~-------e~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ 275 (318)
+|||+|++++|||++++.++++.+.. .++.+ ++. ..+|+.+.++|+||+||+ |.
T Consensus 469 ~awp~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VId-P~------ 541 (569)
T PLN02820 469 FMWPNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVID-PA------ 541 (569)
T ss_pred EECCCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCcccC-HH------
Confidence 99999999999999999999975321 11110 111 368999999999999999 98
Q ss_pred chHHHHHHHHHHhhccC
Q psy14493 276 DSSVLLDISFTLFCNYK 292 (318)
Q Consensus 276 ds~~ll~~~~~l~~~~~ 292 (318)
|||..|..++++.....
T Consensus 542 dTR~~l~~~l~~~~~~~ 558 (569)
T PLN02820 542 DTRRVLGLCLSAALNRS 558 (569)
T ss_pred HHHHHHHHHHHHhhcCC
Confidence 99999999998865533
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=312.47 Aligned_cols=221 Identities=30% Similarity=0.510 Sum_probs=179.7
Q ss_pred HhhcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHH
Q psy14493 62 QIARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYR 138 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~ 138 (318)
.+|.|+.++||+ ++|+.++|+ |.|+++ .|+ +++|||||||+|+||+|||||+. +++|++++.+++
T Consensus 249 ~~P~~~~~~yD~r~ii~~i~D~~~f~E~~~--~~g--~~~vtg~arl~G~pVGiian~~~--------~~~G~~~~~~a~ 316 (493)
T PF01039_consen 249 IIPDDRRRPYDMRDIIARIVDDGSFFELKP--GYG--KNIVTGFARLGGRPVGIIANNPR--------QRAGALDPDGAR 316 (493)
T ss_dssp CS-SSTTS---HHHHHHHHSGGGBEEEEST--TSS--TTEEEEEEEETTEEEEEEEE-TT--------CGGGEB-HHHHH
T ss_pred ccccccCCCCCcceeeEecccCCCceeccc--ccc--CCeEEeeeeeCCcceEEEEeccc--------cccccCChHHHH
Confidence 456778899996 799999995 999985 498 79999999999999999999998 499999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccEE
Q psy14493 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV----SDIT 214 (318)
Q Consensus 139 K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~----~D~v 214 (318)
|++||+++|++++||||+|+|||||.++..+|..|+.+++++++.+++.++||+|+||+|+++|||+++++. +|++
T Consensus 317 K~arfi~lcd~~~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~ 396 (493)
T PF01039_consen 317 KAARFIRLCDAFNIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFV 396 (493)
T ss_dssp HHHHHHHHHHHTT--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEE
T ss_pred HHHHHHHHHHhhCCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875 4999
Q ss_pred EEEcccEEEEeChhHHHHhhhccccchH-----H--------HHHHh--cccHHHHHHcCCcceeecCccccCCCCchHH
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKRAS-----D--------AAEAL--GLTADKLKSIGLINKIIKEPIAYSGGIDSSV 279 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~~~-----~--------a~e~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ 279 (318)
+|||+|++++|+|++++.+++++..... + .+++. ..+++.+.+.+++|.||+ |. |+|.
T Consensus 397 ~Awp~a~~~vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~-p~------~tR~ 469 (493)
T PF01039_consen 397 FAWPTAEIGVMGPEGAASILYRDELEAAEAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDIID-PA------ETRK 469 (493)
T ss_dssp EEETT-EEESS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESS-GG------GHHH
T ss_pred hhhhcceeeecChhhhheeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccC-HH------HHHH
Confidence 9999999999999999999998754211 1 11111 268999999999999999 88 9999
Q ss_pred HHHHHHHHhhccCccccccCCCCC
Q psy14493 280 LLDISFTLFCNYKIQFYVFHINHG 303 (318)
Q Consensus 280 ll~~~~~l~~~~~~~~~~~~~~h~ 303 (318)
.|...+.+...... ..+.+.|+
T Consensus 470 ~l~~~l~~~~~~~~--~~~~rkh~ 491 (493)
T PF01039_consen 470 VLIAALEMLWQKPR--FLPWRKHR 491 (493)
T ss_dssp HHHHHHHHHTTSHC--HHHCHSHH
T ss_pred HHHHHHHHHHhCcc--cccccccc
Confidence 99999998766442 23444443
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=280.61 Aligned_cols=214 Identities=14% Similarity=0.081 Sum_probs=177.4
Q ss_pred cCCCCHHHHHHhhcCCCCCchhh-HHhhhcc--cccc----------cccCCccCCCCcEEEEEEEEcCEEEEEEeecCC
Q psy14493 52 YSKLTPWQISQIARHPKRPYTLD-YIREIFT--DIHE----------LHGDRNYGDDLSIIGVLARINGESCMVIGHQKG 118 (318)
Q Consensus 52 ~~~ltareRi~~~~d~~~~~~~~-~i~~~~d--~~~e----------l~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~ 118 (318)
|-+||+||||+.+.|+++|.+.+ .+.. .| .|.. ......+ ++++|||+|+|||+||+|+++|++
T Consensus 54 h~rl~areRi~~L~D~gsF~E~~~~~~~-~d~l~f~~~~~Y~~~l~~~~~~t~~--~d~vVtG~g~I~G~~V~v~a~D~~ 130 (285)
T TIGR00515 54 HMRMDARERIESLLDEGSFEEFNSHLEP-KDPLKFKDSKKYKDRIAKAQKETGE--KDAVVTGKGTLYGMPIVVAVFDFA 130 (285)
T ss_pred cCcCCHHHHHHHceeCCeeEEeCCcccc-CccccCCcccchhHHHHHHhhccCC--CCcEEEEEEEECCEEEEEEEEecc
Confidence 36899999999999999988874 2222 12 1211 0111112 369999999999999999999999
Q ss_pred CCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 119 RNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 119 ~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
++||+++..+++|+.|++++|.++++|||+|+||+|++++++...+.++..++..+..++..++|+|+|++|
T Consensus 131 --------f~gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~g 202 (285)
T TIGR00515 131 --------FMGGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTD 202 (285)
T ss_pred --------ccCCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 599999999999999999999999999999999999999998888878888888889999889999999999
Q ss_pred CCchhhhhhhc-cccEEEEEcccEEEEeChhHHHHhhhccccchHHHHHHhcccHHHHHHcCCcceeecCccccCCCCch
Q psy14493 199 EGGSGGALAIA-VSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPIAYSGGIDS 277 (318)
Q Consensus 199 ~~~ggga~~~~-~~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds 277 (318)
+|+||+++.++ ++|+++|+|+|.|+++||+.....+... ..+. ..+++.+.++|+||.|++ |. |+
T Consensus 203 pt~GG~aas~a~~~D~iia~p~A~ig~aGprVie~ti~e~------lpe~-~q~ae~~~~~G~vD~iv~-~~------~~ 268 (285)
T TIGR00515 203 PTTGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREK------LPEG-FQTSEFLLEHGAIDMIVH-RP------EM 268 (285)
T ss_pred CcchHHHHHHHhCCCEEEEECCeEEEcCCHHHHHHHhcCc------cchh-cCCHHHHHhCCCCcEEEC-cH------HH
Confidence 99999988876 7999999999999999999644333211 1111 368999999999999999 66 99
Q ss_pred HHHHHHHHHHhhc
Q psy14493 278 SVLLDISFTLFCN 290 (318)
Q Consensus 278 ~~ll~~~~~l~~~ 290 (318)
+..|..+++++..
T Consensus 269 r~~l~~~L~~~~~ 281 (285)
T TIGR00515 269 KKTLASLLAKLQN 281 (285)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987644
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=261.36 Aligned_cols=180 Identities=21% Similarity=0.274 Sum_probs=157.1
Q ss_pred hhHHhhhcccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHH-H-hC
Q psy14493 73 LDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIA-E-KF 150 (318)
Q Consensus 73 ~~~i~~~~d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A-~-~~ 150 (318)
.++++.+||++.+++++ +++|||+|+++|+||+|++|+++. .++..++.|.++++.+| + +|
T Consensus 3 ~~~l~~l~d~~~~~e~~------~~vv~G~arl~G~~V~vIa~~~~~-----------~~g~~~~~k~A~~v~~~~d~~f 65 (238)
T TIGR03134 3 RDWLAALFPNGHEVAGD------PGVLVGSAELAGGKVTVIGVVPDA-----------EVGLDEALALAQAVLDVIEADD 65 (238)
T ss_pred HHHHHHHcCCCcEEecC------CcEEEEEEEECCEEEEEEEECCCC-----------cCChHHHHHHHHHHHHHHHhcC
Confidence 36889999987777643 389999999999999999999872 56667888888888774 5 49
Q ss_pred CCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCC---CCEEEEEcCCCchhhhhhhcc-ccEEEEEcccEEEEeC
Q psy14493 151 NLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLK---VPLISTIIGEGGSGGALAIAV-SDITLMLQYAIYSVIS 226 (318)
Q Consensus 151 ~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~---vP~IavV~G~~~ggga~~~~~-~D~via~~~A~i~v~g 226 (318)
++|||+|+||||++++.++|..|+.+++++++.+++.++ ||+|+||+|+++|||++++++ +|+++|||++++++|+
T Consensus 66 ~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~vm~ 145 (238)
T TIGR03134 66 KRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVHVMD 145 (238)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEEecC
Confidence 999999999999999999999999999997777776555 999999999999999999985 9999999999999999
Q ss_pred hhHHHHhhhccccchHHHHHHh---cccHHHHHHcCCcceeecCcc
Q psy14493 227 PEGCASILWKTSKRASDAAEAL---GLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 227 P~~~a~il~~~~~~~~~a~e~~---~~~a~~a~~~G~vD~ii~~p~ 269 (318)
|+++++|+|++....+++++.+ ..+++++.++|+||+||++|.
T Consensus 146 ~e~aa~I~~~~~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 146 LESMARVTKRSVEELEALAKSSPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred HHHHHHHHccCHhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence 9999999999987777776654 468899999999999999653
|
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >KOG0540|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=278.81 Aligned_cols=218 Identities=22% Similarity=0.333 Sum_probs=190.2
Q ss_pred hcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHH
Q psy14493 64 ARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKA 140 (318)
Q Consensus 64 ~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~ 140 (318)
+.+-..+|++ ++|.+++|+ |.|+.. .|+ +++||||||++|++|++++|||. +.||+++.+.+.|.
T Consensus 306 ~~~~~~~yd~r~vi~~iVD~~~f~E~~~--~y~--~tlvtGfarlnG~tVgIvgnn~k--------f~~G~L~s~sa~Kg 373 (536)
T KOG0540|consen 306 PLNLTKAYDVREVIARIVDGSRFFEFKP--GYG--DTLVTGFARLNGRTVGIVGNNPK--------FAGGVLFSESAVKG 373 (536)
T ss_pred ccccccccchHhHHHhhcccchhhhhcc--ccc--cceeeeeeeECCEEEEEeccCch--------hcccccchhhhhhh
Confidence 4445578884 799999995 889984 499 59999999999999999999998 69999999999999
Q ss_pred HHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhc----cccEEEE
Q psy14493 141 VRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIA----VSDITLM 216 (318)
Q Consensus 141 ~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~----~~D~via 216 (318)
+||+++|.+++||||+|+|++|+.++..+|..|++++.++++.+.++++||+|++++|+++| |.|.|+ ++|+++|
T Consensus 374 arfIe~c~q~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syG-G~y~m~sr~~~gd~~ya 452 (536)
T KOG0540|consen 374 ARFIELCDQRNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYG-GNYAMCSRGYSGDINYA 452 (536)
T ss_pred HHHHHHHHhcCCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccC-CcccccccccCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999 888765 4899999
Q ss_pred EcccEEEEeChhHHHHhhhccccc-hHH----HHHHhcccHHHHHHcCCcceeecCccccCCCCchHHHHHHHHHHhhcc
Q psy14493 217 LQYAIYSVISPEGCASILWKTSKR-ASD----AAEALGLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLDISFTLFCNY 291 (318)
Q Consensus 217 ~~~A~i~v~gP~~~a~il~~~~~~-~~~----a~e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~~ 291 (318)
||+|+|+|||.++++.++.....+ +.. ..|.+ .+|+.+..+||+|.||+ |. |+|..|...+.+...+
T Consensus 453 wP~A~IavmG~~~a~~Vi~q~~~e~a~~~~~~~~E~f-~npy~a~~Rg~~D~II~-p~------~tR~vl~~~l~~~~~~ 524 (536)
T KOG0540|consen 453 WPNARIAVMGGKQAANVIFQITLEKAVALKAPYIEKF-GNPYYAAARGWDDGIID-PS------DTRKVLGLDLQAAANK 524 (536)
T ss_pred cccceeeeccccchhhhhhhhhhhhhhhhcchHHHHh-cCccHHHHhhccccccC-hh------HhhHHHHHHHHHHhcC
Confidence 999999999999999999876322 111 22333 68999999999999999 88 9999999999888776
Q ss_pred CccccccCCCCCCCC
Q psy14493 292 KIQFYVFHINHGLSP 306 (318)
Q Consensus 292 ~~~~~~~~~~h~~~~ 306 (318)
+++- .+||+.+
T Consensus 525 pl~~----~k~g~~~ 535 (536)
T KOG0540|consen 525 PLQT----TKFGVFR 535 (536)
T ss_pred CCcc----ccccccc
Confidence 6542 6777654
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=284.04 Aligned_cols=222 Identities=18% Similarity=0.184 Sum_probs=176.5
Q ss_pred HHHHHHhhhhhcCCCcH-HHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhH-HhhhcccccccccCCccCCC
Q psy14493 18 KIEKLRSLQFSSNIDTS-KEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDY-IREIFTDIHELHGDRNYGDD 95 (318)
Q Consensus 18 ~~~~l~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~-i~~~~d~~~el~~~~~~~d~ 95 (318)
.+++|+++++....+++ ++++|||++ |+||+||||+.++|+++|.+++- ...--..|. ......++
T Consensus 2 ~~~~l~~~~~~~~~~g~~~~~~r~~~~---------g~l~areRi~~LlD~gsF~E~~~~~~~~~~~~~-~~~~~~~~-- 69 (512)
T TIGR01117 2 KIEELHEKKEKIKQGGGEKRIEKQHAQ---------GKMTARERLALLFDPGSFVEIDQFVKHRCTNFG-MDKKELPA-- 69 (512)
T ss_pred hHHHHHHHHHHHHhcCChhhHHhHHhc---------CCCCHHHHHHHhcCCCcEEEecCccccCCCCcc-ccccCCCC--
Confidence 45677777776555554 489999999 99999999999999999877642 211000111 11112234
Q ss_pred CcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchH
Q psy14493 96 LSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQS 175 (318)
Q Consensus 96 ~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~ 175 (318)
+++|||+|+|||++|+|+++|++ ++||+++..+++|+.|++++|.+.++|+|.|+||+|++++++...+.++
T Consensus 70 dgvVtG~G~v~Gr~v~v~a~D~t--------~~gGS~g~~~~~K~~r~~e~A~~~~lPlV~l~dSgGarm~eg~~~l~~~ 141 (512)
T TIGR01117 70 EGVVTGYGTIDGRLVYAFAQDFT--------VMGGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGARIQEAVDALKGY 141 (512)
T ss_pred ceEEEEEEEECCEEEEEEEECCc--------ccccCCCHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCccccchhhhhH
Confidence 69999999999999999999999 5999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHHhhhccccchHHHHHHhcccHHH
Q psy14493 176 EAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCASILWKTSKRASDAAEALGLTADK 254 (318)
Q Consensus 176 ~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a~~ 254 (318)
.+++..+..+++. +|+|++|+|+|+||++|.+++||++||+++ ++++++||......+-.. ...++ +...+
T Consensus 142 ~~~~~~~~~~s~~-iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aGP~vv~~~~Ge~-v~~e~------lGGa~ 213 (512)
T TIGR01117 142 GDIFYRNTIASGV-VPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITGPQVIKTVTGEE-VTAEQ------LGGAM 213 (512)
T ss_pred HHHHHHHHHHcCC-CcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEecChHHHHhhcCcc-cchhh------cchHH
Confidence 8888877777775 999999999999999999999999999997 789999999765544322 12222 22222
Q ss_pred H--HHcCCcceeecC
Q psy14493 255 L--KSIGLINKIIKE 267 (318)
Q Consensus 255 a--~~~G~vD~ii~~ 267 (318)
. ...|.+|-+.+.
T Consensus 214 ~h~~~sGv~d~~~~d 228 (512)
T TIGR01117 214 AHNSVSGVAHFIAED 228 (512)
T ss_pred HhccccceeEEecCC
Confidence 2 358999998873
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=255.51 Aligned_cols=220 Identities=13% Similarity=0.034 Sum_probs=169.7
Q ss_pred hcCCCCHHHHHHhhcCCCCCchh-hHHhhhcccccc-cccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhcc
Q psy14493 51 IYSKLTPWQISQIARHPKRPYTL-DYIREIFTDIHE-LHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRN 128 (318)
Q Consensus 51 ~~~~ltareRi~~~~d~~~~~~~-~~i~~~~d~~~e-l~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~ 128 (318)
.|-.||+||||+.++|+++|.+. +-+........+ +.-...+ ++++|+|+|+|||+||+|+++|++ ++
T Consensus 2 s~~~ltAReRi~~LlD~gSF~E~~g~~~~~~~~~l~~~~~~~~~--~dgvV~G~G~I~Gr~v~v~a~D~t--------~~ 71 (274)
T TIGR03133 2 SFYEANARERARGLLDAGSFRELLGPFDRVISPHLPRQGIVPQF--DDGVVVGRGTIDGKPVVVAAQEGR--------FQ 71 (274)
T ss_pred CcccCCHHHHHHHhcCCCcceEcccccccccCcchhhhcccCCC--CCeEEEEEEEECCEEEEEEEECCC--------cc
Confidence 47889999999999999998776 322221111111 1111112 369999999999999999999999 59
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-----CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC--Cc
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-----FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE--GG 201 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-----~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~--~~ 201 (318)
||++++.+.+|+.|++++|.+ .++|+|.|+||+|++++++...+.++..+++.+..+++. ||+|++|+|+ |+
T Consensus 72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~-vP~Isvv~Gp~gc~ 150 (274)
T TIGR03133 72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAA-VPVIGVIGGRVGCF 150 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCC-CCEEEEEeCCCCcc
Confidence 999999999999999999988 668999999999999998888777778899999999998 9999999999 89
Q ss_pred hhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccchHHHH-HHhcccHHHHHHcCCcceeecCccccCCCCchHHH
Q psy14493 202 SGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRASDAA-EALGLTADKLKSIGLINKIIKEPIAYSGGIDSSVL 280 (318)
Q Consensus 202 ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~-e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~l 280 (318)
||++|.+++||++||+++++|++.||+......-..+...++.+ -...+........|++|.+++ . |..++
T Consensus 151 GG~a~~a~l~D~vim~~~a~i~~aGP~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~sG~~D~~v~--d------d~~a~ 222 (274)
T TIGR03133 151 GGMGIAAGLCSYLIMTEEGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGKHRFLSGDADVLVE--D------DVDAF 222 (274)
T ss_pred hHHHHHHhcCCEEEEeCCcEEeccCHHHHHHhcCCCccCHHHhcccccccchHhHhhcccceEEeC--C------HHHHH
Confidence 99999999999999999999999999976654433222222211 011134556777999999997 2 44444
Q ss_pred HHHHHHHhh
Q psy14493 281 LDISFTLFC 289 (318)
Q Consensus 281 l~~~~~l~~ 289 (318)
-..+..++.
T Consensus 223 ~~~~~~~l~ 231 (274)
T TIGR03133 223 RAAVIAALA 231 (274)
T ss_pred HHHHHHHHh
Confidence 444444443
|
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=254.99 Aligned_cols=213 Identities=17% Similarity=0.119 Sum_probs=171.9
Q ss_pred cCCCCHHHHHHhhcCCCCCchhhH-Hhhh-cccccc--------c---ccCCccCCCCcEEEEEEEEcCEEEEEEeecCC
Q psy14493 52 YSKLTPWQISQIARHPKRPYTLDY-IREI-FTDIHE--------L---HGDRNYGDDLSIIGVLARINGESCMVIGHQKG 118 (318)
Q Consensus 52 ~~~ltareRi~~~~d~~~~~~~~~-i~~~-~d~~~e--------l---~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~ 118 (318)
|-+||+||||+.+.|+++|.+++- +... ...|.. + ...... ++++|||+|+|||++|+|+++|++
T Consensus 66 h~rltAreRI~~L~D~gSF~E~~~~~~~~dpl~f~~d~~~Y~~rl~~a~~~t~~--~dgVVtG~G~I~Gr~v~v~a~Dft 143 (296)
T CHL00174 66 HLKMSSSDRIELLIDPGTWNPMDEDMVSLDPIEFHSDEEPYKDRIDSYQKKTGL--TDAVQTGIGQLNGIPVALGVMDFQ 143 (296)
T ss_pred CcCCCHHHHHHHHccCCccEEcCCccCcCCCccccccccchHHHHHHHHhccCC--CccEEEEEEEECCEEEEEEEECCc
Confidence 468999999999999999988752 3221 111210 0 011112 369999999999999999999999
Q ss_pred CCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHh-cCCCCEEEEEc
Q psy14493 119 RNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMS-KLKVPLISTII 197 (318)
Q Consensus 119 ~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s-~~~vP~IavV~ 197 (318)
++||+++....+|+.|++++|.+.++|+|.|+||+|+|++++...+.++..+...+..+. ..++|+|++++
T Consensus 144 --------f~gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~ 215 (296)
T CHL00174 144 --------FMGGSMGSVVGEKITRLIEYATNESLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILT 215 (296)
T ss_pred --------ccccCcCHHHHHHHHHHHHHHHHcCCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEc
Confidence 599999999999999999999999999999999999999999888888777654444433 44699999999
Q ss_pred CCCchhhhhhhcc-ccEEEEEcccEEEEeChhHHHHhhhccccchHHHHHHhcccHHHHHHcCCcceeecCccccCCCCc
Q psy14493 198 GEGGSGGALAIAV-SDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPIAYSGGID 276 (318)
Q Consensus 198 G~~~ggga~~~~~-~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~d 276 (318)
|||+||+++.+++ +|+++|.|+|.|+++||+.....+..+.. ++ .++++.+.++|+||.|++.. +
T Consensus 216 gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrVIe~t~ge~lp--e~-----fq~ae~l~~~G~vD~iV~r~-------~ 281 (296)
T CHL00174 216 SPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVP--EG-----SQAAEYLFDKGLFDLIVPRN-------L 281 (296)
T ss_pred CCCchHHHHHHHHcccEEEEeCCeEEEeeCHHHHHHhcCCcCC--cc-----cccHHHHHhCcCceEEEcHH-------H
Confidence 9999999999775 99999988999999999976655532211 11 36899999999999999955 7
Q ss_pred hHHHHHHHHHHh
Q psy14493 277 SSVLLDISFTLF 288 (318)
Q Consensus 277 s~~ll~~~~~l~ 288 (318)
.+..|..+++++
T Consensus 282 lr~~l~~ll~~~ 293 (296)
T CHL00174 282 LKGVLSELFQLH 293 (296)
T ss_pred HHHHHHHHHHhh
Confidence 888888888775
|
|
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=256.24 Aligned_cols=209 Identities=12% Similarity=0.062 Sum_probs=162.2
Q ss_pred hhhhhcCCCCHHHHHHhhcCCCCCchh-hHHhhh-cccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccch
Q psy14493 47 LTEEIYSKLTPWQISQIARHPKRPYTL-DYIREI-FTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNER 124 (318)
Q Consensus 47 ~~~~~~~~ltareRi~~~~d~~~~~~~-~~i~~~-~d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~ 124 (318)
+.+..|..|||||||+.++|+++|.++ +-.... +..+........++ +++|+|+|+|||+||+|+++|++
T Consensus 7 ~~~~s~~~ltARERi~~LlD~gSF~E~~g~~~~~~~~~~~~~~~~~~~~--dGvV~G~G~I~Gr~v~v~a~D~t------ 78 (301)
T PRK07189 7 LADRSFIEASARERAAALLDAGSFRELLGPFERVMSPHLPLQGIPPQFD--DGVVVGKGTLDGRPVVVAAQEGR------ 78 (301)
T ss_pred hhhCCceeCCHHHHHHHhcCCCcceEcccccccccCcchhhhccCCCCC--CcEEEEEEEECCEEEEEEEECCC------
Confidence 345678999999999999999998886 433222 11111111111233 69999999999999999999999
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHHhCC-----CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 125 IIRNFGMAKPEGYRKAVRLMHIAEKFN-----LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 125 ~~~~gG~~~~~~~~K~~r~~~~A~~~~-----lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
++||++++.+.+|+.|++++|.+.+ +|+|.|+||+|++++++...+.++..+++.+..+++. ||+|++|.|+
T Consensus 79 --f~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~-VP~I~vv~G~ 155 (301)
T PRK07189 79 --FMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAA-VPVIGLIGGR 155 (301)
T ss_pred --ccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCC
Confidence 5999999999999999999999999 9999999999999998877777778899999999998 9999999999
Q ss_pred --CchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccchHHHH-HHhcccHHHHHHcCCcceeec
Q psy14493 200 --GGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRASDAA-EALGLTADKLKSIGLINKIIK 266 (318)
Q Consensus 200 --~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~-e~~~~~a~~a~~~G~vD~ii~ 266 (318)
|+||++|.+++||++||+++++|++.||+......-......++.. -..-.........|.+|.+++
T Consensus 156 ~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~VIe~~~G~e~~d~~d~~~vw~~lGG~h~~~sG~~D~~v~ 225 (301)
T PRK07189 156 VGCFGGMGIAAALCSYLIVSEEGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGKHRYLSGLADALVD 225 (301)
T ss_pred CCCcHHHHHHHhcCCEEEEECCcEEeccCHHHHHHhcCCcccCHHHhcccccccCcceeeecccceEEeC
Confidence 9999999999999999999999999999975543322112222200 000012223344788888876
|
|
| >PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=237.03 Aligned_cols=145 Identities=57% Similarity=0.959 Sum_probs=108.2
Q ss_pred cccchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhcccc
Q psy14493 4 IFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDI 83 (318)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d~~ 83 (318)
++||||++|.+++.+|++|+........+..++|++++++++++++++|.+||||||+.+.++|+||+..+||..+|++|
T Consensus 1 ~~LdfEk~I~ele~kI~eL~~~~~~~~~d~~~ei~~Le~k~~~l~~eiy~~lt~w~~V~~aRhp~Rp~~~dyI~~l~~df 80 (145)
T PF03255_consen 1 MYLDFEKPIKELEEKIEELKKLAEEGGIDLSDEIASLEEKLEKLRKEIYSNLTPWQRVQLARHPDRPTALDYIENLFDDF 80 (145)
T ss_dssp ---CCCHHHHHCCCCCC--------------TCHHHHHHHHHCCCCHHHHT--HHHHHHHHTBTTS--HHHHHHHH-EEE
T ss_pred CCCchhhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHhhCCCCCCHHHHHHHHhCcC
Confidence 48999999999999999998877655556666899999999999999999999999999999999999999999999999
Q ss_pred cccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHH
Q psy14493 84 HELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAE 148 (318)
Q Consensus 84 ~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~ 148 (318)
.|++||+.|+||+++|+|+|+++|+||+|++++++.++++++.+|+|+..|++|+|+.|++++|+
T Consensus 81 ~ElhGDR~~~dD~AivgG~a~~~g~~V~vig~~KG~~~~e~~~rNFGm~~PeGYRKAlRlmk~Ae 145 (145)
T PF03255_consen 81 IELHGDRLFGDDPAIVGGIARFDGQPVTVIGQQKGRDTKENIKRNFGMPHPEGYRKALRLMKQAE 145 (145)
T ss_dssp EE----SSS---TTEEEEEEEETTEEEEEEEE---SSCCHHHHTGGG---HHHHHHHHHHHHHHH
T ss_pred eEecCCccCCcCccceeeeEEECCEEEEEEEEecCcCHHHHHHHcCCCCCcchHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999985
|
4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: |
| >KOG0540|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-32 Score=259.96 Aligned_cols=197 Identities=26% Similarity=0.354 Sum_probs=171.0
Q ss_pred cchhhhHHHHHHHHHHHHhhhhhcCCCcHH-HHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhccccc
Q psy14493 6 LNFEEPIIKLEKKIEKLRSLQFSSNIDTSK-EINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIH 84 (318)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d~~~ 84 (318)
-+|.++-.+++..+++++ ....++|++ +++++|++ |||++||||++++||++| |-++.
T Consensus 26 ~~~~s~a~~~k~~i~~~R---~~~l~ggg~k~vd~~~sr---------gkl~arerIdlLld~gs~---------Fie~d 84 (536)
T KOG0540|consen 26 KAMDSNAPGMKTLISQLR---FKALLGGGEKAVDAHHSR---------GKLLARERIDLLLDPGSP---------FIELD 84 (536)
T ss_pred HHHHhccHHhhhHHHHHH---HHHHccCChhhhhhhhhh---------cccchhhhhhhccCCCCc---------ceehh
Confidence 346677778888888886 455666766 89999999 999999999999999997 33332
Q ss_pred ccccCCccCC----CCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy14493 85 ELHGDRNYGD----DLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDT 160 (318)
Q Consensus 85 el~~~~~~~d----~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs 160 (318)
.+.+..+|++ ..++|||.|+|+||.|.|++||+++ +||+.++.+.+|.+|.++.|...++|+|+|+||
T Consensus 85 ~fa~h~m~~~e~~ps~sIvtg~g~i~gr~~~vianDfTv--------~ggs~y~i~~kk~lr~~e~a~~~~~p~iyL~DS 156 (536)
T KOG0540|consen 85 QFAGHEMYGKEKVPSGSIVTGRGRINGRKCFVIANDFTV--------KGGSYYPITVKKHLRAQEIADNNRLPCIYLVDS 156 (536)
T ss_pred hhhhhhhccccCCCCCceEeccccccceEEEEEccCchh--------cccccchhhHHHHhhHHHHHhhcCCCceeEecC
Confidence 2333233322 2699999999999999999999995 999999999999999999999999999999999
Q ss_pred CCCCCchhHHhhch---HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHH
Q psy14493 161 PGAFPGIDAEERGQ---SEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCA 231 (318)
Q Consensus 161 ~Ga~~~~~~e~~g~---~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a 231 (318)
+|+++++++|.+.. ++.++.+..-|+.-.+|+|++|+|+|++||+|.++++|+++|+++ +.+++.||....
T Consensus 157 gga~l~~~~es~~d~~~~~~If~n~n~mss~~ipqis~Img~Ct~gg~y~pAm~d~~~~vk~~s~lfl~gp~lVk 231 (536)
T KOG0540|consen 157 GGARLPRQAESFADSYHFGRIFYNQNVMSSGNIPQISVIMGSCTAGGAYVPAMADETIMVKDTSTLFLAGPPLVK 231 (536)
T ss_pred ccccCcchhhhcCChhhhheeeeecceeccCCCCceeEEEecccCCceecccccceeEEecCcceEEecCCchhh
Confidence 99999999999876 788999888888888999999999999999999999999999998 999999997543
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-31 Score=261.36 Aligned_cols=199 Identities=20% Similarity=0.200 Sum_probs=165.8
Q ss_pred HHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhh-HHhhhcccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecC
Q psy14493 39 DLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLD-YIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQK 117 (318)
Q Consensus 39 ~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~-~i~~~~d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~ 117 (318)
|||++ ||||+||||+.++||++|.+.+ +...-...+.. ...++ +++|||+|+|||++|+|+++|+
T Consensus 1 ~~~~~---------Gk~~areRi~~L~D~gSF~E~~~~~~~~~~~~~~---~~~p~--~gvvtG~G~I~G~~v~v~a~D~ 66 (493)
T PF01039_consen 1 KQHAR---------GKLTARERIDLLLDPGSFRELGDLAGAARYKFGR---EKTPG--DGVVTGIGKINGRPVVVIAQDF 66 (493)
T ss_dssp HHHHT---------TEEEHHHHHHHHSGTTEBEEESTTHHTTHCGGGG---GH-TT--TTEEEEEEEETTEEEEEEEEET
T ss_pred Ccccc---------CCcCHHHHHHHhcCCCCCcCchHHHhcccccccc---ccCCC--CcEEEEEEeeCCeeEEEEEecc
Confidence 68899 9999999999999999987763 22221111110 11244 6999999999999999999999
Q ss_pred CCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--CCchhHHhhchHHHHHHHHHHHhcCCCCEEEE
Q psy14493 118 GRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGA--FPGIDAEERGQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 118 ~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga--~~~~~~e~~g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
+ ++||++++.+++|+.|++++|.+.++|+|.|+||+|+ +++++.+.+.+++.++..+..+++ .+|+|++
T Consensus 67 t--------~~gGs~g~~~~~Ki~ra~~~A~~~~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~-~iP~I~v 137 (493)
T PF01039_consen 67 T--------VLGGSVGEVHGEKIARAIELALENGLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSG-GIPQISV 137 (493)
T ss_dssp T--------SGGGTBSHHHHHHHHHHHHHHHHHTEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHT-TS-EEEE
T ss_pred c--------eecCCCCcccceeeehHHHHHHHcCCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhc-CCCeEEE
Confidence 9 5999999999999999999999999999999999999 889999988888999999999999 7999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHHhhhccccchHHHHHHhcccH-HHHHHcCCcceeec
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCASILWKTSKRASDAAEALGLTA-DKLKSIGLINKIIK 266 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a-~~a~~~G~vD~ii~ 266 (318)
|+|+|+||++|.+++||++||+++ ++|++.||......+. .....++. ..+ ......|.+|.+++
T Consensus 138 v~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP~vv~~~~G-e~~~~~~l-----gG~~~h~~~sG~~d~v~~ 204 (493)
T PF01039_consen 138 VTGPCTGGGAYLAALSDFVIMVKGTARIFLAGPRVVESATG-EEVDSEEL-----GGADVHAAKSGVVDYVVD 204 (493)
T ss_dssp EESEEEGGGGHHHHHSSEEEEETTTCEEESSTHHHHHHHHS-SCTSHHHH-----HBHHHHHHTSSSSSEEES
T ss_pred EccccccchhhcccccCccccCccceEEEeccccccccccC-ccccchhh-----hhhhhhcccCCCceEEEe
Confidence 999999999999999999999998 9999999998766665 22222221 233 33568999999997
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=212.16 Aligned_cols=216 Identities=17% Similarity=0.143 Sum_probs=175.1
Q ss_pred CCCCHHHHHHhhcCCCCCchhh--HH--hhh-ccc---ccc-ccc-CCccCCCCcEEEEEEEEcCEEEEEEeecCCCCcc
Q psy14493 53 SKLTPWQISQIARHPKRPYTLD--YI--REI-FTD---IHE-LHG-DRNYGDDLSIIGVLARINGESCMVIGHQKGRNVN 122 (318)
Q Consensus 53 ~~ltareRi~~~~d~~~~~~~~--~i--~~~-~d~---~~e-l~~-~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~ 122 (318)
-+++|+||+..+.|++++.+.+ +. +.+ |.+ +.+ +.. ....+.+++||+|.|+|+|.||++.+.|+.
T Consensus 57 ~ri~A~~Ri~~llD~gsf~el~~~l~~~dPL~F~d~k~Y~~rL~~a~~~tg~~davvtg~g~i~G~pvv~av~df~---- 132 (294)
T COG0777 57 MRISARERLEALLDEGSFEELDSPLEPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTGEGTINGLPVVLAVMDFA---- 132 (294)
T ss_pred cccCHHHHHHHhhCCCcceecccCCCcCCcccCCcchhhHHHHHHHHhhcCCCcceEEEeeEECCeEEEEEEEecc----
Confidence 5799999999999999987752 11 111 111 100 110 011234589999999999999999999999
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCch
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGS 202 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~g 202 (318)
|+|||+|....+|++|+++.|.+.++|+|.|..|+|+|++++.-.+.|+..+...+..++.++.|+|+|+..|.+|
T Consensus 133 ----FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtG 208 (294)
T COG0777 133 ----FMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTG 208 (294)
T ss_pred ----ccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCcc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhc-cccEEEEEcccEEEEeChhHHHHhhhccccchHHHHHHhcccHHHHHHcCCcceeecCccccCCCCchHHHH
Q psy14493 203 GGALAIA-VSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPIAYSGGIDSSVLL 281 (318)
Q Consensus 203 gga~~~~-~~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll 281 (318)
|-....+ ++|++++.|+|.|+++||+.....+..+. .+ - .++++++.++|+||.|++.. |.+.-|
T Consensus 209 GVsASfA~lGDi~iAEP~AlIGFAGpRVIEQTire~L---Pe---g-fQ~aEfLlehG~iD~iv~R~-------elr~tl 274 (294)
T COG0777 209 GVSASFAMLGDIIIAEPGALIGFAGPRVIEQTIREKL---PE---G-FQTAEFLLEHGMIDMIVHRD-------ELRTTL 274 (294)
T ss_pred chhHhHHhccCeeecCcccccccCcchhhhhhhcccC---Cc---c-hhhHHHHHHcCCceeeecHH-------HHHHHH
Confidence 8544433 58999999999999999997554443221 11 1 36899999999999999964 788888
Q ss_pred HHHHHHhhc
Q psy14493 282 DISFTLFCN 290 (318)
Q Consensus 282 ~~~~~l~~~ 290 (318)
..++.++..
T Consensus 275 a~ll~~~~~ 283 (294)
T COG0777 275 ASLLAKLTP 283 (294)
T ss_pred HHHHHHhCC
Confidence 877776654
|
|
| >PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-16 Score=138.53 Aligned_cols=160 Identities=16% Similarity=0.227 Sum_probs=137.4
Q ss_pred CcEEEEEEEE-cCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHH--HHhCCCcEEEEecCCCCCCchhHHhh
Q psy14493 96 LSIIGVLARI-NGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHI--AEKFNLPIFTFIDTPGAFPGIDAEER 172 (318)
Q Consensus 96 ~~vVtG~g~i-~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~--A~~~~lPiV~lvDs~Ga~~~~~~e~~ 172 (318)
..++.|-+.. +++.+.||.+.. .|.+|-..+-+.++.+.- ....+.|||.++||+|..++...|.+
T Consensus 17 ~~v~~g~~~~~~~~~iaVvg~~~-----------~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEll 85 (234)
T PF06833_consen 17 VQVLDGEAGGEDGRFIAVVGDAN-----------HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELL 85 (234)
T ss_pred cceEEeeccccCCcEEEEEecCC-----------CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHh
Confidence 5799999888 899999999874 488888888787777643 34578999999999999999999999
Q ss_pred chHH---HHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc-ccEEEEEcccEEEEeChhHHHHhhhccccchHHHHHHh
Q psy14493 173 GQSE---AIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV-SDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEAL 248 (318)
Q Consensus 173 g~~~---~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~-~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~ 248 (318)
|+.. +.+.+.......+.|+|++|.|++.+||+++.++ +|.+++.+++.+.+|+.++++.|..++.+..+++++..
T Consensus 86 Gi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga~i~vM~~~s~ARVTk~~ve~Le~la~s~ 165 (234)
T PF06833_consen 86 GINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPGAMIHVMGKPSAARVTKRPVEELEELAKSV 165 (234)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCCCeeecCChHHhHHHhhcCHHHHHHHhhcC
Confidence 9854 5566666666778999999999999999999875 99999999999999999999999998877777776653
Q ss_pred ---cccHHHHHHcCCcceeec
Q psy14493 249 ---GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 ---~~~a~~a~~~G~vD~ii~ 266 (318)
..+..+..++|.++++++
T Consensus 166 PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 166 PVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred CCcCCCHHHHHHhccHHHHhc
Confidence 468999999999999997
|
Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.9e-10 Score=97.61 Aligned_cols=128 Identities=19% Similarity=0.209 Sum_probs=91.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEc---CCCchhh
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKFN-LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTII---GEGGSGG 204 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~~-lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~---G~~~ggg 204 (318)
.|.+++.....+.+.++.|.+.+ -+|+..+||||..+.... ..+.++..+++|+|+.|. |.|+|||
T Consensus 7 ~g~I~~~~~~~l~~~l~~a~~~~~~~vvl~InSpGG~v~~~~----------~i~~~l~~~~kPvia~v~~~~G~AasgG 76 (187)
T cd07020 7 NGAITPATADYLERAIDQAEEGGADALIIELDTPGGLLDSTR----------EIVQAILASPVPVVVYVYPSGARAASAG 76 (187)
T ss_pred eeEEChHHHHHHHHHHHHHHhCCCCEEEEEEECCCCCHHHHH----------HHHHHHHhCCCCEEEEEecCCCCchhHH
Confidence 36667777888999998887766 557888899996544332 223344556899999999 9999999
Q ss_pred hhhhccccEEEEEcccEEEEeChhHHH--------------------Hhhhccccch--HHHHHHh----cccHHHHHHc
Q psy14493 205 ALAIAVSDITLMLQYAIYSVISPEGCA--------------------SILWKTSKRA--SDAAEAL----GLTADKLKSI 258 (318)
Q Consensus 205 a~~~~~~D~via~~~A~i~v~gP~~~a--------------------~il~~~~~~~--~~a~e~~----~~~a~~a~~~ 258 (318)
++....||+++|.|+++++..+|.... ...+.+..+. +.+.+.+ .+++.+|++.
T Consensus 77 ~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~ 156 (187)
T cd07020 77 TYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKL 156 (187)
T ss_pred HHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHc
Confidence 999989999999999999986664210 0011111111 2233322 4799999999
Q ss_pred CCcceeec
Q psy14493 259 GLINKIIK 266 (318)
Q Consensus 259 G~vD~ii~ 266 (318)
|+||++++
T Consensus 157 Glvd~v~~ 164 (187)
T cd07020 157 GVIDLIAA 164 (187)
T ss_pred CCcccccC
Confidence 99999996
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-09 Score=98.11 Aligned_cols=139 Identities=16% Similarity=0.112 Sum_probs=99.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCC-----CCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCch
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPG-----AFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGS 202 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~G-----a~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~g 202 (318)
...+++......+.++++.+++..+-+|.|.-.+. ..+..............+.+..+...++|+|++|.|.|.|
T Consensus 20 ~~Nal~~~~~~~l~~al~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~G 99 (243)
T PRK07854 20 RRNALNAELCEELREAVRKAVDESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIG 99 (243)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Confidence 44689999999999999887766777777765332 3332111001111233445666778899999999999999
Q ss_pred hhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 203 GGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 203 gga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
||......||++||.++++|++ +.|..+.....++..+...+.+.+ .+++.++.+.|+||+|.+
T Consensus 100 gG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~ 173 (243)
T PRK07854 100 AGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT 173 (243)
T ss_pred cHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccccC
Confidence 9999998999999999998876 345555554455555555555554 489999999999999964
|
|
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-09 Score=98.65 Aligned_cols=153 Identities=17% Similarity=0.213 Sum_probs=109.1
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCC-chhHH---------hhc
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFN-LPIFTFIDTPGAFP-GIDAE---------ERG 173 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~-lPiV~lvDs~Ga~~-~~~~e---------~~g 173 (318)
+++.-..+.-|++. ...+++....+.+..+++.+++.. +-+|.+.-+++++. |.... ...
T Consensus 4 ~~~~v~~i~ln~p~---------~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~ 74 (245)
T PF00378_consen 4 IEDGVATITLNRPE---------KRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEARE 74 (245)
T ss_dssp EETTEEEEEEECGG---------GTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHH
T ss_pred EECCEEEEEECCCC---------CCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccc
Confidence 34444445555553 457899999999999998887654 45777766665554 22111 112
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHH
Q psy14493 174 QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEA 247 (318)
Q Consensus 174 ~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~ 247 (318)
........+..+..+++|+|++|.|.|+|||+..+..||++|+.+++.|++ +.|..+....+.+..+...+.+.
T Consensus 75 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l 154 (245)
T PF00378_consen 75 FFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRAREL 154 (245)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHH
T ss_pred cchhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccc
Confidence 235667778888889999999999999999999988899999999998776 34544444444444444344444
Q ss_pred h----cccHHHHHHcCCcceeec
Q psy14493 248 L----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 248 ~----~~~a~~a~~~G~vD~ii~ 266 (318)
+ .+++.++.+.|+||++++
T Consensus 155 ~l~g~~~~a~eA~~~Glv~~v~~ 177 (245)
T PF00378_consen 155 LLTGEPISAEEALELGLVDEVVP 177 (245)
T ss_dssp HHHTCEEEHHHHHHTTSSSEEES
T ss_pred ccccccchhHHHHhhcceeEEcC
Confidence 3 589999999999999997
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.8e-09 Score=94.58 Aligned_cols=138 Identities=13% Similarity=0.107 Sum_probs=98.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-chhHHhh---------chHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP-GIDAEER---------GQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~-~~~~e~~---------g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
..-+++......+.++++.++ ..+-+|.|.-.+.++. |.....+ .........+..+..+++|+|++|.
T Consensus 22 ~~Nal~~~~~~~l~~al~~~~-~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 100 (255)
T PRK08150 22 KRNALNDGLIAALRAAFARLP-EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALH 100 (255)
T ss_pred cccCCCHHHHHHHHHHHHHhh-cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 346899999999999998877 6677777765443222 1111111 1112233445567788999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|.|||...+..||++|+.++++|++ +.|..+....+.+..+...+.+.+ .+++.++.+.|+||++++
T Consensus 101 G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 179 (255)
T PRK08150 101 GAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVP 179 (255)
T ss_pred CEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeC
Confidence 999999999998899999999998877 235554555555555554555543 589999999999999997
|
|
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-08 Score=93.99 Aligned_cols=138 Identities=18% Similarity=0.197 Sum_probs=96.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-chhHHhhc-----------hHHH-HHHHHHHHhcCCCCEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP-GIDAEERG-----------QSEA-IGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~-~~~~e~~g-----------~~~~-~~~~~~~~s~~~vP~Iav 195 (318)
-.+++......+.++++.+++..+-+|.|.-.+.++. |....... .... ....+..+..+++|+|++
T Consensus 20 ~Nal~~~~~~~l~~~l~~~~~d~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 99 (256)
T TIGR02280 20 LNSFTAEMHLELREALERVERDDARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCA 99 (256)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCcEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3678999999999999988766566677765443332 11111100 0111 122345677889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|+|||...+..||++||.+++.|++ +.|..+.....+...+...+.+.+ .+++.++.+.|+||+++
T Consensus 100 v~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 179 (256)
T TIGR02280 100 VNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVV 179 (256)
T ss_pred ECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceee
Confidence 99999999999998999999999998875 235544444445545544454443 48999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 180 ~ 180 (256)
T TIGR02280 180 D 180 (256)
T ss_pred C
Confidence 6
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-08 Score=94.92 Aligned_cols=139 Identities=16% Similarity=0.197 Sum_probs=99.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh----------------c----hHHHHHHHHHHH
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER----------------G----QSEAIGHSIYVM 185 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~----------------g----~~~~~~~~~~~~ 185 (318)
...+++....+.+.++++.+++ ..+.+|.|.-.+.++. |.....+ . ......+.+..+
T Consensus 26 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 105 (272)
T PRK06142 26 KGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAV 105 (272)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 4578999999999999988765 4578888876553332 2111110 0 011223344556
Q ss_pred hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHH
Q psy14493 186 SKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKL 255 (318)
Q Consensus 186 s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a 255 (318)
..+++|+|++|.|.|.|||......||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++
T Consensus 106 ~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA 185 (272)
T PRK06142 106 ADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEA 185 (272)
T ss_pred HhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHH
Confidence 778999999999999999999998999999999998876 345555544555545545555543 5899999
Q ss_pred HHcCCcceeec
Q psy14493 256 KSIGLINKIIK 266 (318)
Q Consensus 256 ~~~G~vD~ii~ 266 (318)
.+.|+||+|++
T Consensus 186 ~~~GLv~~vv~ 196 (272)
T PRK06142 186 EKIGLVNRVYD 196 (272)
T ss_pred HHcCCccEecC
Confidence 99999999997
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-08 Score=94.59 Aligned_cols=139 Identities=19% Similarity=0.239 Sum_probs=96.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-chhHHhh-----------c-hHH-HHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP-GIDAEER-----------G-QSE-AIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~-~~~~e~~-----------g-~~~-~~~~~~~~~s~~~vP~I 193 (318)
...+++......+..+++.++...+.+|.|.-++.++. |.....+ . ... .....+..+..+++|+|
T Consensus 24 ~~Nal~~~~~~~l~~~~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 103 (262)
T PRK08140 24 KLNSFTREMHRELREALDQVEDDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVI 103 (262)
T ss_pred ccCCCCHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 34688999999999999887755577777765443322 1111110 0 011 12234556778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
+.|.|.|.|||...+..||++|+.+++.|+. +.|..+....++...+...+.+.+ .+++.++.+.|+||+
T Consensus 104 aav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~ 183 (262)
T PRK08140 104 AAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWR 183 (262)
T ss_pred EEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccE
Confidence 9999999999999988999999999988764 234444444445545544555543 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 184 vv~ 186 (262)
T PRK08140 184 VVD 186 (262)
T ss_pred eeC
Confidence 996
|
|
| >KOG0016|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.2e-09 Score=95.22 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=117.7
Q ss_pred EEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHH------hhc----
Q psy14493 104 RINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAE------ERG---- 173 (318)
Q Consensus 104 ~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e------~~g---- 173 (318)
+.||-...++-.+|. +--++..+.+.-+.|+.+.|+...--.+++.-+.|-+...+.+ ..+
T Consensus 13 ~~~g~~~I~~~~~Pk---------k~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~ 83 (266)
T KOG0016|consen 13 RENGPFFIALNIRPK---------KKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDAN 83 (266)
T ss_pred ecCCcEEEEecCCCc---------ccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCccc
Confidence 456655555554776 5678999999999999999988765466666655543322111 110
Q ss_pred -----hH---HHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhcccc
Q psy14493 174 -----QS---EAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSK 239 (318)
Q Consensus 174 -----~~---~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~ 239 (318)
.. ..+...+..+...+.|+|++|.||++|-|+...++||+|++.+++++.. ..|||++++.++...
T Consensus 84 ~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~im 163 (266)
T KOG0016|consen 84 EESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIM 163 (266)
T ss_pred ccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhh
Confidence 00 1122256678888999999999999999999999999999998887665 589999999999888
Q ss_pred chHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 240 RASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 240 ~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+...+.|.+ +.++.++...|+|++|.+
T Consensus 164 G~~~A~E~ll~~~kltA~Ea~~~glVskif~ 194 (266)
T KOG0016|consen 164 GSASANEMLLFGEKLTAQEACEKGLVSKIFP 194 (266)
T ss_pred chhhHHHHHHhCCcccHHHHHhcCchhhhcC
Confidence 777787876 589999999999999996
|
|
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-08 Score=92.62 Aligned_cols=138 Identities=15% Similarity=0.211 Sum_probs=97.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------ch-------HHHHHHHHHHHhcCCCCEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------GQ-------SEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------g~-------~~~~~~~~~~~s~~~vP~I 193 (318)
..++++...+.+..+++.+.. ..+-+|.|.-.++++. |...... .. .....+.+..+...++|+|
T Consensus 23 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 102 (255)
T PRK07260 23 SNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVI 102 (255)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEE
Confidence 467899999999999987765 4466777766554433 2111110 00 1122344556778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|.|||+.....||++||++++.|+. +.|..+....+++..+...+.+.+ .+++.++.+.|+||+
T Consensus 103 aav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~ 182 (255)
T PRK07260 103 MCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYR 182 (255)
T ss_pred EEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcce
Confidence 9999999999999998999999999998876 235555544444444444444443 589999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 183 vv~ 185 (255)
T PRK07260 183 VAE 185 (255)
T ss_pred ecC
Confidence 996
|
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-08 Score=93.20 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=98.3
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-CCCC-chhHHhh---------chHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 130 GMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTP-GAFP-GIDAEER---------GQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~-Ga~~-~~~~e~~---------g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
.+++......+..+++.+++ ..+-+|.|.-++ .++. |...... .........+..+..+++|+|++|.
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 103 (258)
T PRK09076 24 NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN 103 (258)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 67899999999999988765 456677775544 2222 2111110 0112233456667788999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|+|||...+..||++|+.++++|++ +.|..+.+..++...+...+.+.+ .+++.++.+.|+||+|++
T Consensus 104 G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 182 (258)
T PRK09076 104 GYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVE 182 (258)
T ss_pred CEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecC
Confidence 999999999988899999999998877 346655555555555555555544 479999999999999997
|
|
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=94.39 Aligned_cols=139 Identities=17% Similarity=0.242 Sum_probs=98.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh----------------chH----HHHHHHHHHH
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER----------------GQS----EAIGHSIYVM 185 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~----------------g~~----~~~~~~~~~~ 185 (318)
...+++....+.+..+++.+.+ ..+-+|.|.-++.++. |-..... ... ......+..+
T Consensus 28 ~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 107 (275)
T PLN02664 28 QRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAI 107 (275)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999988764 4577787766543332 1111100 001 1122344567
Q ss_pred hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHH
Q psy14493 186 SKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKL 255 (318)
Q Consensus 186 s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a 255 (318)
..+++|+|+.|.|.|+|||......||++|+.++++|++ +.|..+....++...+...+.+.+ .+++.++
T Consensus 108 ~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA 187 (275)
T PLN02664 108 EQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEA 187 (275)
T ss_pred HhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHH
Confidence 778999999999999999999998999999999998877 345545444455555555555554 4899999
Q ss_pred HHcCCcceeec
Q psy14493 256 KSIGLINKIIK 266 (318)
Q Consensus 256 ~~~G~vD~ii~ 266 (318)
.+.|+||++++
T Consensus 188 ~~~GLv~~vv~ 198 (275)
T PLN02664 188 KELGLVSRVFG 198 (275)
T ss_pred HHcCCCceeeC
Confidence 99999999996
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=94.62 Aligned_cols=152 Identities=11% Similarity=0.186 Sum_probs=102.2
Q ss_pred cCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCC--CCC-chhHHhh--------ch
Q psy14493 106 NGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPG--AFP-GIDAEER--------GQ 174 (318)
Q Consensus 106 ~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~G--a~~-~~~~e~~--------g~ 174 (318)
+|.-+.|--|++. .-.+++......+..+++.+++..+-+|.|.-.+| ++. |...... ..
T Consensus 11 ~~~v~~itlnrp~---------~~Nal~~~~~~~l~~al~~~~~d~v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~ 81 (261)
T PRK11423 11 INKIATITFNNPA---------KRNALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSY 81 (261)
T ss_pred ECCEEEEEEcCcc---------ccCCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCCCeeECCcCHHHHhhccccHHHH
Confidence 4444445555554 34688999999999999887766666666653221 221 2111111 01
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh
Q psy14493 175 SEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL 248 (318)
Q Consensus 175 ~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~ 248 (318)
.......+..+..+++|+|++|.|.|+|||+..+..||++||.++++|++ +.|..+....+.+..+...+.+.+
T Consensus 82 ~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~ 161 (261)
T PRK11423 82 DDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMF 161 (261)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHH
Confidence 12233455667788999999999999999999888899999999998776 234444444444444444454543
Q ss_pred ----cccHHHHHHcCCcceeec
Q psy14493 249 ----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 ----~~~a~~a~~~G~vD~ii~ 266 (318)
.+++.++.+.|+||+|++
T Consensus 162 l~g~~~~a~eA~~~GLv~~vv~ 183 (261)
T PRK11423 162 FTASPITAQRALAVGILNHVVE 183 (261)
T ss_pred HcCCCcCHHHHHHcCCcCcccC
Confidence 589999999999999996
|
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-08 Score=92.78 Aligned_cols=139 Identities=17% Similarity=0.316 Sum_probs=97.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCC-----CchhHH--------hhchHHHHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAF-----PGIDAE--------ERGQSEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~-----~~~~~e--------~~g~~~~~~~~~~~~s~~~vP~I 193 (318)
...+++....+.+..+++.+++. .+-+|.|.-.+.++ +.+-.+ ...........+..+..+++|+|
T Consensus 23 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvI 102 (260)
T PRK07511 23 ARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVI 102 (260)
T ss_pred cccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEE
Confidence 34688999999999999888654 56677775433332 221111 00112233445566778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|+|||......||++|++++++|++ +.|..+.....++..+...+.+.+ .+++.++.+.|+||+
T Consensus 103 Aav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~ 182 (260)
T PRK07511 103 AAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNR 182 (260)
T ss_pred EEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccE
Confidence 9999999999999998999999999998876 345555555444444444444443 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 183 vv~ 185 (260)
T PRK07511 183 LAE 185 (260)
T ss_pred eeC
Confidence 996
|
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-08 Score=92.18 Aligned_cols=139 Identities=21% Similarity=0.297 Sum_probs=99.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh-----c---hHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER-----G---QSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~-----g---~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
...+++....+.+.++++.++. ..+-+|.|.-.++++. |...... . ........+..+..+++|+|++|.
T Consensus 26 ~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 105 (251)
T PRK06023 26 KKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVD 105 (251)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeC
Confidence 4578999999999999987764 4577777766554433 1111110 0 112233455677788999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|.|||......||++|+.++++|++ +.|..+.....++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 106 G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 184 (251)
T PRK06023 106 GLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVD 184 (251)
T ss_pred CceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeC
Confidence 999999999998999999999998776 245555555555544444444443 479999999999999996
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-08 Score=92.73 Aligned_cols=139 Identities=14% Similarity=0.180 Sum_probs=99.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------ch-HHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------GQ-SEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------g~-~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
...+++....+.+.++++.++. ..+-+|.|.-.++++. |...... .. .......+..+..+++|+|++|.|
T Consensus 24 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G 103 (257)
T PRK05862 24 ALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAG 103 (257)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 3468899999999999987764 4567787776543332 1111110 01 123344556778889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|||......||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||+|++
T Consensus 104 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 181 (257)
T PRK05862 104 YALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVP 181 (257)
T ss_pred EEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeC
Confidence 99999999998999999999988876 345555555555555555555554 489999999999999996
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-08 Score=92.74 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=96.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-CCCC-chhHHhhc---------hHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTP-GAFP-GIDAEERG---------QSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~-Ga~~-~~~~e~~g---------~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++......+..+++.++. ..+-+|.|.-++ .++. |....... ........+..+..+++|+|++
T Consensus 27 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 106 (256)
T PRK06143 27 SLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIAR 106 (256)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4568899999999999988764 456667776544 2332 22111110 1122234455677789999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEEe----C-hhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSVI----S-PEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v~----g-P~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|.|+|||......||++|+.++++|++. | |..+....++...+...+.+.+ .++++++++.|+||++++
T Consensus 107 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 186 (256)
T PRK06143 107 IPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGIPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVP 186 (256)
T ss_pred ECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecC
Confidence 999999999999989999999999877651 1 3333444455555555555543 489999999999999997
|
|
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-08 Score=93.38 Aligned_cols=138 Identities=17% Similarity=0.238 Sum_probs=98.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHh-----------hchHHHHHHHHHHHhcCCCCEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEE-----------RGQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~-----------~g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
..++++...+.+..+++.++. ..+-+|.|.-.++++. |..... ..........+..+..+++|+|++
T Consensus 33 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 112 (268)
T PRK07327 33 LNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSA 112 (268)
T ss_pred cCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 468899999999999987764 4566777765443332 111110 011222344556677889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|+|||...+..||++|+.++++|++ +.|..+....++...+...+.+.+ .+++.++++.|+||+++
T Consensus 113 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 192 (268)
T PRK07327 113 IHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAV 192 (268)
T ss_pred EcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceec
Confidence 99999999999988899999999998876 334545555556555555555554 58999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 193 ~ 193 (268)
T PRK07327 193 D 193 (268)
T ss_pred C
Confidence 6
|
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-08 Score=90.23 Aligned_cols=137 Identities=15% Similarity=0.217 Sum_probs=96.5
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCcEEEEecCCCCCC-chhHHhh--------c-hHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 130 GMAKPEGYRKAVRLMHIAE-KFNLPIFTFIDTPGAFP-GIDAEER--------G-QSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~-~~~lPiV~lvDs~Ga~~-~~~~e~~--------g-~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
-++++.....+...++.++ ..++-+|.|.-.++++. |-..... . ........+.++...++|+|+.|.|
T Consensus 29 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G 108 (222)
T PRK05869 29 NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITG 108 (222)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 6889999999999997765 45677777765443332 1110000 0 1122234566778889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|+|||...+..||++||.++++|++ +.|..+....+.+..+...+.+.+ .+++.++.+.|+||++++
T Consensus 109 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 186 (222)
T PRK05869 109 YALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVA 186 (222)
T ss_pred EeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeC
Confidence 99999999999999999999988877 235544444444445544444443 589999999999999996
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-08 Score=92.18 Aligned_cols=139 Identities=17% Similarity=0.236 Sum_probs=97.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-C-CcEEEEecCCCCCC-chhHHhh-------------c-hH-HHHHHHHHHHhcCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-N-LPIFTFIDTPGAFP-GIDAEER-------------G-QS-EAIGHSIYVMSKLK 189 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~-lPiV~lvDs~Ga~~-~~~~e~~-------------g-~~-~~~~~~~~~~s~~~ 189 (318)
...+++....+.+.++++.+.+. . +-+|.|.-.+.++. |...... + .. ..+...+..+..++
T Consensus 24 ~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 103 (266)
T PRK05981 24 VMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLP 103 (266)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCC
Confidence 45788999999999999888754 3 66677765443332 1111110 0 01 11234556677889
Q ss_pred CCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcC
Q psy14493 190 VPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIG 259 (318)
Q Consensus 190 vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G 259 (318)
+|+|++|.|.|+|||......||++||+++++++. +.|..+.....++..+...+.+.+ .+++.++.+.|
T Consensus 104 kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~G 183 (266)
T PRK05981 104 CPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWG 183 (266)
T ss_pred CCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcC
Confidence 99999999999999999988899999999988875 345545544445444444444443 48999999999
Q ss_pred Ccceeec
Q psy14493 260 LINKIIK 266 (318)
Q Consensus 260 ~vD~ii~ 266 (318)
+||++++
T Consensus 184 lv~~vv~ 190 (266)
T PRK05981 184 LVNRVVD 190 (266)
T ss_pred CceEeeC
Confidence 9999996
|
|
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-08 Score=93.35 Aligned_cols=139 Identities=16% Similarity=0.220 Sum_probs=97.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-chhHHhh----------chHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP-GIDAEER----------GQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~-~~~~e~~----------g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
...+++......+..+++.+....+-+|.|.-.+..+. |...... .....+...+..+..+++|+|++|
T Consensus 26 ~~Nal~~~~~~~l~~~l~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav 105 (260)
T PRK07659 26 ALNALDEPMLKELLQALKEVAESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAI 105 (260)
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 45788999999999999887555677777766554333 2111110 011223344556777899999999
Q ss_pred cCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|+|||......||++|++++++|++ +.|..+.....++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 185 (260)
T PRK07659 106 HGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVIG 185 (260)
T ss_pred cCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHhh
Confidence 9999999999988899999999998776 234433334444445554555554 489999999999999983
|
|
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-08 Score=91.99 Aligned_cols=139 Identities=17% Similarity=0.197 Sum_probs=96.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------c---hHHHHHHHH-HHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------G---QSEAIGHSI-YVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------g---~~~~~~~~~-~~~s~~~vP~Iav 195 (318)
...+++......+.++++.+.+ ..+-+|.|.-.++++. |...... . ........+ ..+..+++|+|++
T Consensus 19 ~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 98 (255)
T PRK06563 19 KRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVA 98 (255)
T ss_pred cccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEE
Confidence 3468999999999999987664 4566777766554433 1111100 0 001112222 2466788999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|+|||...+..||++||.++++|++ +.|..++...+++..+...+.+.+ .+++.++.+.|+||+++
T Consensus 99 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 178 (255)
T PRK06563 99 VQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVV 178 (255)
T ss_pred EcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEee
Confidence 99999999999998999999999998877 335555555555555555555543 48999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 179 ~ 179 (255)
T PRK06563 179 P 179 (255)
T ss_pred C
Confidence 6
|
|
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-08 Score=93.43 Aligned_cols=139 Identities=18% Similarity=0.216 Sum_probs=99.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------c-------hHHHHHHHHHHHhcCCCCE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------G-------QSEAIGHSIYVMSKLKVPL 192 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------g-------~~~~~~~~~~~~s~~~vP~ 192 (318)
...+++......+.++++.++. ..+-+|.|.-.+.++. |.....+ . ........+..+..+++|+
T Consensus 28 ~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 107 (275)
T PRK09120 28 KRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPT 107 (275)
T ss_pred cccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 4578999999999999988764 4567777766544332 1111100 0 0011233456677889999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcc
Q psy14493 193 ISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLIN 262 (318)
Q Consensus 193 IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD 262 (318)
|++|.|.|.|||...+..||++|++++++|++ +.|.++....++...+...+.+.+ .+++.++.+.|+|+
T Consensus 108 IAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~ 187 (275)
T PRK09120 108 IAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVN 187 (275)
T ss_pred EEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcc
Confidence 99999999999999998999999999998877 345655555555555555555543 48999999999999
Q ss_pred eeec
Q psy14493 263 KIIK 266 (318)
Q Consensus 263 ~ii~ 266 (318)
++++
T Consensus 188 ~vv~ 191 (275)
T PRK09120 188 ESVP 191 (275)
T ss_pred eecC
Confidence 9996
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-08 Score=91.55 Aligned_cols=139 Identities=20% Similarity=0.222 Sum_probs=97.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-CCCC-chhHHhh---------chHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTP-GAFP-GIDAEER---------GQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~-Ga~~-~~~~e~~---------g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++....+.+.++++.+.+ ..+-+|.|.-.+ +++. |...... .........+..+..+++|+|++
T Consensus 24 ~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 103 (260)
T PRK05809 24 ALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAA 103 (260)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3468899999999999987764 446666665544 3332 2111110 01112234555677889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|||...+..||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||+++
T Consensus 104 v~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 183 (260)
T PRK05809 104 INGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVV 183 (260)
T ss_pred EcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCccc
Confidence 99999999999988999999999988876 345555555555545544554443 47999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 184 ~ 184 (260)
T PRK05809 184 E 184 (260)
T ss_pred C
Confidence 6
|
|
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-08 Score=90.97 Aligned_cols=139 Identities=19% Similarity=0.208 Sum_probs=97.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh-------chHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER-------GQSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~-------g~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
...++++.....+..+++.++.. .+-+|.|.-.+.++. |-....+ .........+..+..+++|+|++|.|
T Consensus 24 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 103 (258)
T PRK06190 24 ARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAING 103 (258)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 45789999999999999887654 566777765443332 1111100 00112234556677889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|+|||...+..||++||.+++.|++ +.|..+.....++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 104 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~ 181 (258)
T PRK06190 104 AAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVP 181 (258)
T ss_pred EeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecC
Confidence 99999999988999999999998875 235444444445545554555543 579999999999999996
|
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.9e-08 Score=91.55 Aligned_cols=139 Identities=15% Similarity=0.185 Sum_probs=98.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chhHHhh-------------chHHHHHHHHHHHhcCCCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GIDAEER-------------GQSEAIGHSIYVMSKLKVP 191 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~~e~~-------------g~~~~~~~~~~~~s~~~vP 191 (318)
...+++.+..+.+.++++.+++ ..+-+|.|.-+++ ++. |.....+ .........+..+..+++|
T Consensus 23 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 102 (260)
T PRK05980 23 KLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKP 102 (260)
T ss_pred cccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCC
Confidence 3468899999999999988765 4567777766542 332 2211111 0011122345567778999
Q ss_pred EEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCc
Q psy14493 192 LISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLI 261 (318)
Q Consensus 192 ~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~v 261 (318)
+|+.|.|.|.|||......||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+|
T Consensus 103 vIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv 182 (260)
T PRK05980 103 VIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLV 182 (260)
T ss_pred EEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCC
Confidence 999999999999999988999999999988776 345555555555555555555543 4899999999999
Q ss_pred ceeec
Q psy14493 262 NKIIK 266 (318)
Q Consensus 262 D~ii~ 266 (318)
|++++
T Consensus 183 ~~vv~ 187 (260)
T PRK05980 183 NAVVP 187 (260)
T ss_pred CcccC
Confidence 99996
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-08 Score=90.81 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=97.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh------chH-HHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER------GQS-EAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~------g~~-~~~~~~~~~~s~~~vP~IavV~G 198 (318)
...+++....+.+.++++.+++. .+-+|.|.-.+.++. |...... ... ......+..+..+++|+|+.|.|
T Consensus 22 ~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 101 (255)
T PRK09674 22 ARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNG 101 (255)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 45789999999999999887654 566777765443332 2111110 011 12233455677889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|||......||++|+.++++|++ +.|..+....+.+..+...+.+.+ .+++.++.+.|+||++++
T Consensus 102 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 179 (255)
T PRK09674 102 YALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFP 179 (255)
T ss_pred EeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecC
Confidence 99999999998999999999998876 345544444444444444444443 489999999999999996
|
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.4e-08 Score=91.30 Aligned_cols=139 Identities=19% Similarity=0.226 Sum_probs=96.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh-------------chHHHHHHHHHHHhcCCCCE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER-------------GQSEAIGHSIYVMSKLKVPL 192 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~-------------g~~~~~~~~~~~~s~~~vP~ 192 (318)
...+++......+..+++.+.. ..+-+|.|.-.+.++. |...... .........+..+..+++|+
T Consensus 37 ~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 116 (277)
T PRK08258 37 RKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPI 116 (277)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 4468899999999988887763 4566777755443332 1111110 01111234556677889999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcccEEEE------eC-hhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCc
Q psy14493 193 ISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------IS-PEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLI 261 (318)
Q Consensus 193 IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~g-P~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~v 261 (318)
|++|.|.|+|||...+..||++||.+++++++ +. |..+....+++..+...+.+.+ .+++.++.+.|+|
T Consensus 117 IAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv 196 (277)
T PRK08258 117 IAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFF 196 (277)
T ss_pred EEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCC
Confidence 99999999999999998999999999988876 12 3444445555555554555543 4899999999999
Q ss_pred ceeec
Q psy14493 262 NKIIK 266 (318)
Q Consensus 262 D~ii~ 266 (318)
|++++
T Consensus 197 ~~vv~ 201 (277)
T PRK08258 197 NRLVE 201 (277)
T ss_pred cEecC
Confidence 99996
|
|
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-08 Score=90.89 Aligned_cols=139 Identities=19% Similarity=0.282 Sum_probs=98.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh--------chHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER--------GQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~--------g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
.-.+++....+.+..+++.+.. ..+-+|.|.-.++++. |...... .........+..+..+++|+|++|.
T Consensus 25 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~ 104 (259)
T PRK06688 25 KKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVN 104 (259)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 3468899999999999987765 4577777765443332 1111100 1123344556677788999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|+|||......||++|+.++++|++ +.|..+.....++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 105 G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~ 183 (259)
T PRK06688 105 GPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVP 183 (259)
T ss_pred CeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecC
Confidence 999999999988999999999988877 335544444444444444444443 489999999999999996
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5e-08 Score=90.53 Aligned_cols=139 Identities=15% Similarity=0.166 Sum_probs=98.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCC-CCC-chhHHhh-----------chHHHHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPG-AFP-GIDAEER-----------GQSEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~G-a~~-~~~~e~~-----------g~~~~~~~~~~~~s~~~vP~I 193 (318)
...+++....+.+..+++.+++. .+-+|.|.-+++ ++. |-..... .........+..+..+++|+|
T Consensus 31 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 110 (269)
T PRK06127 31 RHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTI 110 (269)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 45789999999999999888765 455666665442 332 2111110 011222345566778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|+|||......||++|++++++|++ +.|..+.....++..+...+.+.+ .+++.++.+.|+||+
T Consensus 111 aav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~ 190 (269)
T PRK06127 111 ACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHR 190 (269)
T ss_pred EEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCE
Confidence 9999999999999998999999999998877 345555555455555555555543 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
|++
T Consensus 191 vv~ 193 (269)
T PRK06127 191 VTA 193 (269)
T ss_pred eeC
Confidence 996
|
|
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.8e-08 Score=85.61 Aligned_cols=138 Identities=18% Similarity=0.258 Sum_probs=96.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHH-----------hhchHHHHHHHHHHHhcCCCCEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAE-----------ERGQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e-----------~~g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
-.+++....+.+.++++.+.. ..+-+|.|.-.++.+. |.... ...........+..+...++|+|++
T Consensus 20 ~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~ 99 (195)
T cd06558 20 RNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAA 99 (195)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 478899999999999988876 4566777766544433 21111 1112344556666777889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEEeC------hhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSVIS------PEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v~g------P~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|+|+.....||+++|.+++.+++.. |..+....+.+......+.+.. .+++.++.+.|+||+++
T Consensus 100 v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~ 179 (195)
T cd06558 100 VNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVV 179 (195)
T ss_pred ECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeec
Confidence 9999999999998889999999998887632 3333333333333333333332 47999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 180 ~ 180 (195)
T cd06558 180 P 180 (195)
T ss_pred C
Confidence 6
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-08 Score=90.56 Aligned_cols=139 Identities=19% Similarity=0.239 Sum_probs=98.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chhHHhh---------chHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GIDAEER---------GQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~~e~~---------g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++......+.++++.+++ ..+-+|.|.-.++ ++. |.....+ .........+..+..+++|+|+.
T Consensus 24 ~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 103 (260)
T PRK07657 24 AANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAA 103 (260)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3468899999999999987764 4566777766554 333 2111111 11123344566677889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|+|||+.....||++|+.++++|++ +.|..+.+...+...+...+.+.+ .+++.++.+.|+||+++
T Consensus 104 v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 183 (260)
T PRK07657 104 INGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVV 183 (260)
T ss_pred EcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeec
Confidence 99999999999998999999999988776 345555555455545544554543 48999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 184 ~ 184 (260)
T PRK07657 184 P 184 (260)
T ss_pred C
Confidence 6
|
|
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-08 Score=90.63 Aligned_cols=137 Identities=13% Similarity=0.219 Sum_probs=97.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------------chHHHHHHHHHHHhcCCCCEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------------GQSEAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------------g~~~~~~~~~~~~s~~~vP~Ia 194 (318)
..++++...+.+.++++.++. ..+.+|.|.-.++++. |.....+ .........+..+..+++|+|+
T Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 104 (262)
T PRK05995 25 RNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIA 104 (262)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEE
Confidence 458899999999999988765 4567777766554333 2111100 0012334556677788999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
+|.|.|.|||+..+..||++|+.++++|++ +.|.++...+ .+..+...+.+.+ .+++.++.+.|+||++
T Consensus 105 av~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l-~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v 183 (262)
T PRK05995 105 RVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPYV-IRAMGERAARRYFLTAERFDAAEALRLGLVHEV 183 (262)
T ss_pred EECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHHH-HHHhCHHHHHHHHHcCCccCHHHHHHcCCCCee
Confidence 999999999999998999999999988877 3455444443 3344544555543 4899999999999999
Q ss_pred ec
Q psy14493 265 IK 266 (318)
Q Consensus 265 i~ 266 (318)
++
T Consensus 184 v~ 185 (262)
T PRK05995 184 VP 185 (262)
T ss_pred cC
Confidence 96
|
|
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.1e-08 Score=89.85 Aligned_cols=139 Identities=17% Similarity=0.267 Sum_probs=96.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chhHHhh-------chH-HHHHHHHHHHhcCCCCEEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GIDAEER-------GQS-EAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~~e~~-------g~~-~~~~~~~~~~s~~~vP~IavV 196 (318)
...+++......+..+++.++. ..+-+|.|.-+++ ++. |.....+ ... ..+...+..+..+++|+|++|
T Consensus 22 ~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 101 (256)
T TIGR03210 22 KMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARV 101 (256)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4468899999999999988764 4566777765442 222 2211111 001 112334556778899999999
Q ss_pred cCCCchhhhhhhccccEEEEEcccEEEEe------ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQYAIYSVI------SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~A~i~v~------gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|.|||...+..||++|+.++++|++. .|.++....+.+..+...+.+.+ .+++.++.+.|+||++++
T Consensus 102 ~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~ 181 (256)
T TIGR03210 102 QGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVP 181 (256)
T ss_pred CCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeC
Confidence 99999999999999999999999888772 23333334445555555555554 489999999999999996
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.4e-08 Score=89.06 Aligned_cols=138 Identities=16% Similarity=0.166 Sum_probs=95.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhhc------hHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEERG------QSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~g------~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
...+++....+.+.++++.+++. .+.+|.|.-++.++. |-...... .....+..+. ...+++|+|++|.|.
T Consensus 23 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~kPvIaav~G~ 101 (254)
T PRK08252 23 ARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLT-ERPPRKPLIAAVEGY 101 (254)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHH-HhcCCCCEEEEECCE
Confidence 34688999999999999887644 577887766544332 11111110 0111111111 135689999999999
Q ss_pred CchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 200 GGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 200 ~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|||......||++|+.+++.|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||+|++
T Consensus 102 a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 178 (254)
T PRK08252 102 ALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTE 178 (254)
T ss_pred EehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecC
Confidence 9999999988899999999998876 345555555555555555555544 489999999999999997
|
|
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.2e-08 Score=89.04 Aligned_cols=138 Identities=18% Similarity=0.219 Sum_probs=96.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chhHHhh---------chHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GIDAEER---------GQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~~e~~---------g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
..+++....+.+.++++.+++ ..+-+|.|.-.+| ++. |.....+ .........+..+..+++|+|+.|
T Consensus 16 ~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 95 (251)
T PLN02600 16 KNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVV 95 (251)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 357899999999999987664 4577777764432 222 2111110 011222334556778899999999
Q ss_pred cCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|+|||......||++||.++++|++ +.|..+....++...+...+.+.+ .+++.++.+.|+||++++
T Consensus 96 ~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 175 (251)
T PLN02600 96 EGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVP 175 (251)
T ss_pred cCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeC
Confidence 9999999999998999999999998877 345555554455545544554543 589999999999999996
|
|
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.3e-08 Score=89.95 Aligned_cols=137 Identities=14% Similarity=0.159 Sum_probs=96.6
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chhHHhhc--------hHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 130 GMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GIDAEERG--------QSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~~e~~g--------~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
.+++......+.++++.++. ..+-+|.|.-+++ ++. |....... ........+.++..+++|+|+.|.|
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 103 (261)
T PRK03580 24 NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNG 103 (261)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEECC
Confidence 68899999999999987764 4567777765442 222 22111110 0111234456677889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|+|||......||++|+.++++|++ +.|..+....+.+..+...+.+.+ .+++.++++.|+||++++
T Consensus 104 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 181 (261)
T PRK03580 104 YAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVP 181 (261)
T ss_pred eeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecC
Confidence 99999999998999999999998876 345555554445545544554443 589999999999999997
|
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.6e-08 Score=89.24 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=94.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chhHHhh------chHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GIDAEER------GQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~~e~~------g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
-.+++......+.++++.+++ ..+-+|.|.-+++ ++. |...... ......+..+..+..+++|+|+.|.|.
T Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~ 104 (259)
T PRK06494 25 MNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGV 104 (259)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCE
Confidence 358899999999999987664 4567777765442 222 2211111 011111222333446789999999999
Q ss_pred CchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 200 GGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 200 ~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|||...+..||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 105 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~ 181 (259)
T PRK06494 105 AMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVP 181 (259)
T ss_pred EecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecC
Confidence 9999999988899999999998877 335545444455555555555543 489999999999999997
|
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.8e-08 Score=88.60 Aligned_cols=137 Identities=18% Similarity=0.161 Sum_probs=94.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCC-----CchhHHh--hc-----hHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAF-----PGIDAEE--RG-----QSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~-----~~~~~e~--~g-----~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++....+.+..+++.++. .+-+|.+.-.+.++ +.+-.+. .. ........+..+...++|+|+.
T Consensus 24 ~~Nal~~~~~~~L~~~l~~~~~-~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 102 (255)
T PRK07112 24 AQNTINDRLIAECMDVLDRCEH-AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAH 102 (255)
T ss_pred ccCCCCHHHHHHHHHHHHHhhc-CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEE
Confidence 3468899999999999988773 56677776544333 2211110 00 0122334556677789999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|||...+..||++||.++++|++ +.|.++... ..+..+...+.+.+ .+++.++.+.|+||+++
T Consensus 103 v~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~-l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 181 (255)
T PRK07112 103 VRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVLPF-LIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYG 181 (255)
T ss_pred EecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchhhHH-HHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceec
Confidence 99999999999998999999999998877 334433322 23334444444443 48999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 182 ~ 182 (255)
T PRK07112 182 A 182 (255)
T ss_pred C
Confidence 6
|
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=5e-08 Score=89.55 Aligned_cols=138 Identities=16% Similarity=0.189 Sum_probs=97.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh-----c--hHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER-----G--QSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~-----g--~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
...+++.....-+..+++.+.+. .+.+|.|...+.++. |...... + .... ...+..+...++|+|++|.|
T Consensus 25 ~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~-~~~~~~l~~~~kPvIaav~G 103 (249)
T PRK07110 25 NKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTE-ANLYSLALNCPIPVIAAMQG 103 (249)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhh-HHHHHHHHcCCCCEEEEecC
Confidence 44688999999999999877654 567787776554332 2111111 0 0111 24556677889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|||...+..||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 104 ~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~ 181 (249)
T PRK07110 104 HAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLP 181 (249)
T ss_pred ceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeC
Confidence 99999999998999999999987766 234444445555444544555544 489999999999999996
|
|
| >PRK05870 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-08 Score=92.49 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=97.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHh---------hchHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEE---------RGQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~---------~g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
...+++....+.+.++++.+++ ..+-+|.|.-++.++. |-.... ..........+..+...++|+|+.|
T Consensus 23 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 102 (249)
T PRK05870 23 RRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAV 102 (249)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3468899999999999988764 4577777766544332 111111 0112333445566778899999999
Q ss_pred cCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|+|||+.....||++||.++++|++ +.|..+....+.+..+...+.+.+ .+++.++.+.|+||++++
T Consensus 103 ~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 182 (249)
T PRK05870 103 NGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVAD 182 (249)
T ss_pred CCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHHh
Confidence 9999999999998999999999998765 234444444444444544555544 489999999999999983
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.3e-08 Score=89.95 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=98.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh-------chHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER-------GQSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~-------g~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
...+++......+..+++.+++ ..+-+|.|.-.+.++. |.....+ .........+..+..+++|+|++|.|
T Consensus 28 ~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 107 (261)
T PRK08138 28 ARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNG 107 (261)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 3468899999999999987764 4567777765443332 2111111 01122334556677889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|||...+..||++|+.++++|++ +.|..+....+.+..+...+.+.+ .+++.++++.|+||++++
T Consensus 108 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (261)
T PRK08138 108 YALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVE 185 (261)
T ss_pred EEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecC
Confidence 99999999988999999999988776 235544444445545555555543 479999999999999996
|
|
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-07 Score=86.31 Aligned_cols=135 Identities=14% Similarity=0.180 Sum_probs=92.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-chhHHh--------hchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP-GIDAEE--------RGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~-~~~~e~--------~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
.++++.....+..+++.++ ...-+|.+.-.+.++. |..... ..........+..+...++|+|+.|.|.|
T Consensus 24 Nal~~~~~~~l~~~l~~~~-~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a 102 (229)
T PRK06213 24 NALSPAMIDALNAALDQAE-DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGHA 102 (229)
T ss_pred CCCCHHHHHHHHHHHHHhh-ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCee
Confidence 6789999999999998876 4566777776554443 211111 11122334556677788999999999999
Q ss_pred chhhhhhhccccEEEEEcc-cEEEEe-------ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 201 GSGGALAIAVSDITLMLQY-AIYSVI-------SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 201 ~ggga~~~~~~D~via~~~-A~i~v~-------gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|||...+..||++||.++ +++++- .|.++...+ ........+.+.+ .+++.++.+.|+||++++
T Consensus 103 ~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l-~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~ 179 (229)
T PRK06213 103 IAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELA-RDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVP 179 (229)
T ss_pred eHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHH-HHHcCHHHHHHHHHcCcccCHHHHHHCCCceeccC
Confidence 9999999888999999999 877761 233333222 2222222333332 489999999999999996
|
|
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.9e-08 Score=89.16 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=97.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh--------ch-H-------HHHHHHHHHHhcCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER--------GQ-S-------EAIGHSIYVMSKLK 189 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~--------g~-~-------~~~~~~~~~~s~~~ 189 (318)
...+++....+.+..+++.+++. .+-+|.|.-+++++. |...... .. . ....+.+..+..++
T Consensus 23 ~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (262)
T PRK07509 23 KMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLP 102 (262)
T ss_pred cccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCC
Confidence 44789999999999999887654 466777766554443 1111100 00 0 01112233456788
Q ss_pred CCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEe------ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcC
Q psy14493 190 VPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVI------SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIG 259 (318)
Q Consensus 190 vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~------gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G 259 (318)
+|+|+.|.|.|+|||......||++|+.++++|++. .|..+.....+...+...+.+.+ .+++.++.+.|
T Consensus 103 kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~G 182 (262)
T PRK07509 103 VPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELG 182 (262)
T ss_pred CCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcC
Confidence 999999999999999999889999999999988772 35555555555545544454543 58999999999
Q ss_pred Ccceeec
Q psy14493 260 LINKIIK 266 (318)
Q Consensus 260 ~vD~ii~ 266 (318)
+||++++
T Consensus 183 lv~~vv~ 189 (262)
T PRK07509 183 LVTHVSD 189 (262)
T ss_pred Chhhhhc
Confidence 9999986
|
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.1e-08 Score=90.79 Aligned_cols=139 Identities=17% Similarity=0.135 Sum_probs=97.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCC-----CchhHH---------------------hhchHHH-HH
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAF-----PGIDAE---------------------ERGQSEA-IG 179 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~-----~~~~~e---------------------~~g~~~~-~~ 179 (318)
...+++.....-+..+++.+++ ..+-+|.|.-.+.++ +.+-.. ....+.. ..
T Consensus 24 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (296)
T PRK08260 24 KLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGG 103 (296)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHH
Confidence 4578999999999999988764 456777776544333 221100 0001111 12
Q ss_pred HHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----c
Q psy14493 180 HSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----G 249 (318)
Q Consensus 180 ~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~ 249 (318)
..+..+..+++|+|++|.|.|+|||...+..||++|+.++++|++ +.|..+.....++..+...+.+.+ .
T Consensus 104 ~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~ 183 (296)
T PRK08260 104 RVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRV 183 (296)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCc
Confidence 345567778999999999999999999999999999999998876 235555555555555555555554 4
Q ss_pred ccHHHHHHcCCcceeec
Q psy14493 250 LTADKLKSIGLINKIIK 266 (318)
Q Consensus 250 ~~a~~a~~~G~vD~ii~ 266 (318)
+++.++.+.|+||++++
T Consensus 184 ~~a~eA~~~GLv~~vv~ 200 (296)
T PRK08260 184 FDAQEALDGGLVRSVHP 200 (296)
T ss_pred cCHHHHHHCCCceeecC
Confidence 79999999999999996
|
|
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=8e-08 Score=89.02 Aligned_cols=137 Identities=13% Similarity=0.221 Sum_probs=96.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh------------chHHHHHHHHHHHhcCCCCEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER------------GQSEAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~------------g~~~~~~~~~~~~s~~~vP~Ia 194 (318)
.-+++......+.++++.++.. .+-+|.|.-.+.++. |.....+ .....+...+..+..+++|+|+
T Consensus 27 ~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 106 (265)
T PRK05674 27 NNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLA 106 (265)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEE
Confidence 4578999999999999887654 456777765543332 1111100 0112344566677888999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
.|.|.|.|||...+..||++|+.++++|++ +.|..+...+. ...+...+.+.+ .+++.++.+.|+|++|
T Consensus 107 aV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~l~-~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v 185 (265)
T PRK05674 107 VVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPFVV-KAIGERAARRYALTAERFDGRRARELGLLAES 185 (265)
T ss_pred EEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHHHH-HHhCHHHHHHHHHhCcccCHHHHHHCCCccee
Confidence 999999999999998999999999998877 34554444433 334444444443 4899999999999999
Q ss_pred ec
Q psy14493 265 IK 266 (318)
Q Consensus 265 i~ 266 (318)
++
T Consensus 186 v~ 187 (265)
T PRK05674 186 YP 187 (265)
T ss_pred cC
Confidence 96
|
|
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.9e-08 Score=89.58 Aligned_cols=139 Identities=18% Similarity=0.223 Sum_probs=96.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chhHHhh---------chH-HHHHHHHHHHhcCCCCEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GIDAEER---------GQS-EAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~~e~~---------g~~-~~~~~~~~~~s~~~vP~Ia 194 (318)
...+++....+.+.++++.++. ..+-+|.|.-+++ ++. |.....+ ... ......+..+..+++|+|+
T Consensus 23 ~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 102 (259)
T TIGR01929 23 VRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIA 102 (259)
T ss_pred cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEE
Confidence 3468899999999999987764 4466777765442 222 2111100 000 1122344567788999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
.|.|.|.|||......||++||.++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||++
T Consensus 103 av~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 182 (259)
T TIGR01929 103 MVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTV 182 (259)
T ss_pred EEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccc
Confidence 999999999999988899999999988877 235444444455555545555544 5899999999999999
Q ss_pred ec
Q psy14493 265 IK 266 (318)
Q Consensus 265 i~ 266 (318)
++
T Consensus 183 v~ 184 (259)
T TIGR01929 183 VP 184 (259)
T ss_pred cC
Confidence 96
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.8e-08 Score=88.28 Aligned_cols=139 Identities=18% Similarity=0.203 Sum_probs=95.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCC-CCC-chhHHhh----------chHHHHHHHHHHHhcCCCCEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPG-AFP-GIDAEER----------GQSEAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~G-a~~-~~~~e~~----------g~~~~~~~~~~~~s~~~vP~Ia 194 (318)
...+++....+.+..+++.+.+. .+-+|.|.-+++ ++. |...... .....+...+..+..+++|+|+
T Consensus 28 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 107 (262)
T PRK06144 28 ARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIA 107 (262)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 34688999999999999887654 566777765442 222 2211110 0112233455567788999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEEe-----C--hhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSVI-----S--PEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v~-----g--P~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
.|.|.|.|||...+..||++||.+++.|++- | |..+....+++..+...+.+.+ .+++.++.+.|+||+
T Consensus 108 av~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~ 187 (262)
T PRK06144 108 AIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNE 187 (262)
T ss_pred EECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCe
Confidence 9999999999999988999999999888652 2 3333334444445544555544 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 188 vv~ 190 (262)
T PRK06144 188 VVE 190 (262)
T ss_pred ecC
Confidence 996
|
|
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-08 Score=86.16 Aligned_cols=90 Identities=21% Similarity=0.158 Sum_probs=73.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhh
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKFN-LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALA 207 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~~-lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~ 207 (318)
-|.+++.....+.|.++.|.+.+ -+||..+||||..+.. .......+...++|+++.|.|.|.|+|++.
T Consensus 7 ~g~I~~~~~~~l~~~l~~a~~~~~~~ivl~inspGG~v~~----------~~~I~~~l~~~~~pvva~V~g~AaSaG~~i 76 (178)
T cd07021 7 EGEIDPGLAAFVERALKEAKEEGADAVVLDIDTPGGRVDS----------ALEIVDLILNSPIPTIAYVNDRAASAGALI 76 (178)
T ss_pred eeEECHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCCHHH----------HHHHHHHHHhCCCCEEEEECCchHHHHHHH
Confidence 37788888899999999998876 5688999999966442 223344455667999999999999999999
Q ss_pred hccccEEEEEcccEEEEeChh
Q psy14493 208 IAVSDITLMLQYAIYSVISPE 228 (318)
Q Consensus 208 ~~~~D~via~~~A~i~v~gP~ 228 (318)
...||+++|.|++.++..+|-
T Consensus 77 a~a~d~i~m~p~a~iG~~~~v 97 (178)
T cd07021 77 ALAADEIYMAPGATIGAAEPI 97 (178)
T ss_pred HHhCCeEEECCCCeEecCeeE
Confidence 989999999999999988773
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.8e-08 Score=88.93 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=96.4
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh----------chHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 130 GMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER----------GQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~----------g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
.+++....+.+..+++.+.+ ..+.+|.|.-.+.++. |...... .........+..+..+++|+|++|.
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 102 (257)
T PRK07658 23 NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIH 102 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 68899999999999987764 4577777765443222 1111100 0112233455667788999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|.|||...+..||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++++.|+||++++
T Consensus 103 G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 181 (257)
T PRK07658 103 GAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFP 181 (257)
T ss_pred CeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecC
Confidence 999999999988899999999987776 235544444445545554555544 589999999999999996
|
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.5e-08 Score=88.65 Aligned_cols=138 Identities=14% Similarity=0.225 Sum_probs=97.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh------------chHHHHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER------------GQSEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~------------g~~~~~~~~~~~~s~~~vP~I 193 (318)
.-.+++....+.+..+++.+++. .+-+|.|.-.+.++. |-..... .....+...+..+..+++|+|
T Consensus 25 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 104 (262)
T PRK07468 25 KHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLI 104 (262)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEE
Confidence 34689999999999999887654 466677765443332 2111100 011223445566778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|.|||...+..||++|++++++|++ +.|..+.+.+.+. .+...+.+.+ .+++.++.+.|+||+
T Consensus 105 aav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~~a~~lll~g~~~~a~eA~~~Glv~~ 183 (262)
T PRK07468 105 GRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANARRVFMSARLFDAEEAVRLGLLSR 183 (262)
T ss_pred EEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHHHHHHHHHhCCccCHHHHHHcCCcce
Confidence 9999999999999988899999999988776 3455545444433 4555555544 589999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 184 v~~ 186 (262)
T PRK07468 184 VVP 186 (262)
T ss_pred ecC
Confidence 996
|
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5e-08 Score=90.59 Aligned_cols=139 Identities=17% Similarity=0.209 Sum_probs=96.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhhc--------------hH-----HHHHHHHHHHh
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEERG--------------QS-----EAIGHSIYVMS 186 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~g--------------~~-----~~~~~~~~~~s 186 (318)
...+++....+.+.++++.+... .+-+|.|.-.+.++. |-...... .. ....+.+..+.
T Consensus 26 ~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (272)
T PRK06210 26 RLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLT 105 (272)
T ss_pred cccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHH
Confidence 45789999999999999877643 456676665443332 11111100 00 01122345677
Q ss_pred cCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHH
Q psy14493 187 KLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLK 256 (318)
Q Consensus 187 ~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~ 256 (318)
.+++|+|++|.|.|+|||...+..||++|+.++++|++ +.|..+.....+...+...+.+.+ .+++.++.
T Consensus 106 ~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~ 185 (272)
T PRK06210 106 ALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEAL 185 (272)
T ss_pred hCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHH
Confidence 78999999999999999999999999999999998875 234444555555545554555544 48999999
Q ss_pred HcCCcceeec
Q psy14493 257 SIGLINKIIK 266 (318)
Q Consensus 257 ~~G~vD~ii~ 266 (318)
+.|+||++++
T Consensus 186 ~~Glv~~vv~ 195 (272)
T PRK06210 186 RLGLVNRVVP 195 (272)
T ss_pred HcCCcceecC
Confidence 9999999996
|
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.5e-08 Score=88.33 Aligned_cols=152 Identities=18% Similarity=0.240 Sum_probs=111.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh----------chHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER----------GQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~----------g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
-+++......+..+++.++.. .+.+|.|.-.+.++. |-..... .........+..+..+++|+|+.|.
T Consensus 27 Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 106 (257)
T COG1024 27 NALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVN 106 (257)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEc
Confidence 689999999999999998876 788888887664333 2111111 1123344567788889999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeecC
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIKE 267 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~~ 267 (318)
|.|+|||.-....||++|+.++++|++ +-|..+++..+++..+...+.+.+ .+++.++.+.|+||++++.
T Consensus 107 G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 186 (257)
T COG1024 107 GYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPD 186 (257)
T ss_pred ceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCC
Confidence 999999999998999999999998877 234335556666666666666643 4899999999999999972
Q ss_pred ccccCCCCchHHHHHHHHHHhhc
Q psy14493 268 PIAYSGGIDSSVLLDISFTLFCN 290 (318)
Q Consensus 268 p~~~sgg~ds~~ll~~~~~l~~~ 290 (318)
.-.++....++.+.
T Consensus 187 ---------~~~l~~~a~~~a~~ 200 (257)
T COG1024 187 ---------AEELLERALELARR 200 (257)
T ss_pred ---------HHHHHHHHHHHHHH
Confidence 23455555555544
|
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.1e-08 Score=89.14 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=96.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh----------------chHHHHHHHHHHHhcCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER----------------GQSEAIGHSIYVMSKLK 189 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~----------------g~~~~~~~~~~~~s~~~ 189 (318)
...+++....+.+.++++.+++ ..+-+|.|.-.+.++. |-..... .......+.+..+..++
T Consensus 30 ~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (276)
T PRK05864 30 RMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLH 109 (276)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCC
Confidence 3468899999999999987765 3567777765443332 1111100 01122334455677889
Q ss_pred CCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eCh-hHHHHhhhccccchHHHHHHh----cccHHHHHHc
Q psy14493 190 VPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISP-EGCASILWKTSKRASDAAEAL----GLTADKLKSI 258 (318)
Q Consensus 190 vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP-~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~ 258 (318)
+|+|++|.|.|.|||...+..||++|+.++++|++ +.| ..+.....++..+...+.+.+ .+++.++++.
T Consensus 110 kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~ 189 (276)
T PRK05864 110 QPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERI 189 (276)
T ss_pred CCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHc
Confidence 99999999999999999998999999999987765 223 444444455545555555543 4899999999
Q ss_pred CCcceeec
Q psy14493 259 GLINKIIK 266 (318)
Q Consensus 259 G~vD~ii~ 266 (318)
|+|+++++
T Consensus 190 Glv~~vv~ 197 (276)
T PRK05864 190 GLVSRQVP 197 (276)
T ss_pred CCcceeeC
Confidence 99999996
|
|
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.1e-08 Score=88.58 Aligned_cols=139 Identities=16% Similarity=0.198 Sum_probs=94.2
Q ss_pred cCCCCCH-HHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh---------------chHH-HHHHHHHHHhcC
Q psy14493 128 NFGMAKP-EGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER---------------GQSE-AIGHSIYVMSKL 188 (318)
Q Consensus 128 ~gG~~~~-~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~---------------g~~~-~~~~~~~~~s~~ 188 (318)
...+++. ...+.+..+++.+++ ..+.+|.|.-.+.++. |...... ..+. .+...+..+..+
T Consensus 23 ~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (266)
T PRK09245 23 TRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNL 102 (266)
T ss_pred cccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcC
Confidence 3457774 788888888877764 4577777765443332 1111100 0011 122345567788
Q ss_pred CCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHc
Q psy14493 189 KVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSI 258 (318)
Q Consensus 189 ~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~ 258 (318)
++|+|+.|.|.|.|||...+..||++|+.++++|++ +.|..+....+.+..+...+.+.+ .+++.++++.
T Consensus 103 ~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~ 182 (266)
T PRK09245 103 EVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEW 182 (266)
T ss_pred CCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHc
Confidence 999999999999999999988899999999988876 335544444444444444444443 4799999999
Q ss_pred CCcceeec
Q psy14493 259 GLINKIIK 266 (318)
Q Consensus 259 G~vD~ii~ 266 (318)
|+||++++
T Consensus 183 Glv~~vv~ 190 (266)
T PRK09245 183 GLVSRVVP 190 (266)
T ss_pred CCcceecC
Confidence 99999996
|
|
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=87.91 Aligned_cols=138 Identities=16% Similarity=0.191 Sum_probs=94.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh----------chHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER----------GQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~----------g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++......+.++++.++.. .+-+|.|.-.+.++. |...... .......+.+..+..+++|+|++
T Consensus 31 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 110 (266)
T PRK08139 31 AFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIAR 110 (266)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 34678999999999999877644 466777755443322 1111100 01122334556677889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEEe------ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSVI------SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v~------gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|||...+..||++|+.++++|++- .|.... ....+..+...+.+.+ .+++.++.+.|+||+|+
T Consensus 111 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~-~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv 189 (266)
T PRK08139 111 VHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTPM-VALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVV 189 (266)
T ss_pred ECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCccH-HHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEee
Confidence 999999999999888999999999988772 233222 2233334444455544 47999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 190 ~ 190 (266)
T PRK08139 190 P 190 (266)
T ss_pred C
Confidence 7
|
|
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=87.66 Aligned_cols=139 Identities=22% Similarity=0.287 Sum_probs=95.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh-----c-hHH------HHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER-----G-QSE------AIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~-----g-~~~------~~~~~~~~~s~~~vP~I 193 (318)
...+++....+.+.++++.++.. .+-+|.|.-.+.++. |...... + ... .....+..+..+++|+|
T Consensus 25 ~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvI 104 (263)
T PRK07799 25 ARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLI 104 (263)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEE
Confidence 34689999999999999887654 466777765443332 1111110 0 000 01112333557789999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
+.|.|.|+|||......||++|+.++++|++ +.|..+....+.+..+...+.+.+ .+++.++.+.|+||+
T Consensus 105 aav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~ 184 (263)
T PRK07799 105 AAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGH 184 (263)
T ss_pred EEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccE
Confidence 9999999999999988999999999988777 345555555455545555555544 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 185 vv~ 187 (263)
T PRK07799 185 VVP 187 (263)
T ss_pred ecC
Confidence 997
|
|
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=88.38 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=100.9
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCC-CCC-chhHHhh--------c
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPG-AFP-GIDAEER--------G 173 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~G-a~~-~~~~e~~--------g 173 (318)
.+|.-+.|.-|++. ...+++....+.+..+++.++.. .+-+|.|.-.++ ++. |...... .
T Consensus 19 ~~~~v~~itlnrp~---------~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 89 (273)
T PRK07396 19 SADGIAKITINRPE---------VRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDD 89 (273)
T ss_pred ecCCEEEEEEcCCc---------ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchh
Confidence 44443444445554 34689999999999999887654 466677765442 222 2111110 0
Q ss_pred hHH--HHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeC------hhHHHHhhhccccchHHHH
Q psy14493 174 QSE--AIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVIS------PEGCASILWKTSKRASDAA 245 (318)
Q Consensus 174 ~~~--~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~g------P~~~a~il~~~~~~~~~a~ 245 (318)
... .....+..+..+++|+|+.|.|.|+|||...+..||++|+.+++.|++.. |..+....+....+...+.
T Consensus 90 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~ 169 (273)
T PRK07396 90 GVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAR 169 (273)
T ss_pred hhhhhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHH
Confidence 011 11234456778899999999999999999998889999999998888732 3333333334444444455
Q ss_pred HHh----cccHHHHHHcCCcceeec
Q psy14493 246 EAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 246 e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+.+ .+++.++.+.|+||+|++
T Consensus 170 ~l~ltg~~~~A~eA~~~GLv~~vv~ 194 (273)
T PRK07396 170 EIWFLCRQYDAQEALDMGLVNTVVP 194 (273)
T ss_pred HHHHhCCCcCHHHHHHcCCcCeecC
Confidence 544 489999999999999996
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.5e-08 Score=88.53 Aligned_cols=136 Identities=14% Similarity=0.143 Sum_probs=95.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHh------hchHHHHHHHHHHHhcCCCCEEEEEcCCCc
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEE------RGQSEAIGHSIYVMSKLKVPLISTIIGEGG 201 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~------~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ 201 (318)
.+++......+.++++.+++. .+-+|.|.-.++++. |..... ..........+..+..+++|+|+.|.|.|+
T Consensus 22 Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 101 (251)
T TIGR03189 22 NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCL 101 (251)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCeee
Confidence 688999999999999887644 566777765443332 111111 011222334556677889999999999999
Q ss_pred hhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 202 SGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 202 ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|||......||++|+.++++|++ +.|.++. ...++..+...+.+.+ .+++.++.+.|+|+++++
T Consensus 102 GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~~~-~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~ 175 (251)
T TIGR03189 102 GGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAAS-CLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAE 175 (251)
T ss_pred eHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchH-HHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Confidence 99999998999999999998877 2344333 3445545555555554 489999999999999996
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >KOG0368|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-09 Score=116.45 Aligned_cols=181 Identities=17% Similarity=0.214 Sum_probs=141.3
Q ss_pred CCCCHHHHH-HhhcCCCCCchh-hHH----------hhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCC
Q psy14493 53 SKLTPWQIS-QIARHPKRPYTL-DYI----------REIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKG 118 (318)
Q Consensus 53 ~~ltareRi-~~~~d~~~~~~~-~~i----------~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~ 118 (318)
..+++|+|. +...+-..+||. .+| ..+||. |.|.-.. |+ .+||||.+|++|.||||||.+..
T Consensus 1784 ~~~D~~dR~vef~p~~q~~yD~Rwli~G~~~~~~~~~GlFDk~SF~Eil~~--WA--ktVV~GRArLgGIPvGVIavEtr 1859 (2196)
T KOG0368|consen 1784 EPKDPPDRDVEFVPSTQNPYDPRWLIAGKNDSTGWLSGLFDKGSFDEILSG--WA--KTVVTGRARLGGIPVGVIAVETR 1859 (2196)
T ss_pred CCCCCcccceeccCCCCCCCCHHHHhcCCcCCCccccccccCccHHHHHhH--Hh--hHheecceecCCcceEEEEEEee
Confidence 556788886 333333567774 444 347774 7776643 78 79999999999999999999843
Q ss_pred C------------Cc-cchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHH
Q psy14493 119 R------------NV-NERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVM 185 (318)
Q Consensus 119 ~------------~~-~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~ 185 (318)
. +. +......|-.|.|.++-|.++++.-.++.++|++.|.+.-||..|...........++..+.++
T Consensus 1860 tve~~vPADPan~dS~e~i~q~AGQVWyPdSAfKTaQAInDFNrEqLPLmIiAnwRGFSGGqkDMy~~VLkfGa~IVDaL 1939 (2196)
T KOG0368|consen 1860 TVENIVPADPANLDSEEQITQEAGQVWYPDSAFKTAQAINDFNREQLPLMIIANWRGFSGGQKDMYDQVLKFGAYIVDAL 1939 (2196)
T ss_pred eeeeeccCCCCCCCcHhhhhhcCCceecCchHHHHHHHHhhhccccCCeEEeecccccCccchHHHHHHHHHHHHHHHHH
Confidence 2 11 2336778889999999999999988889999999999999999998777777788889999999
Q ss_pred hcCCCCEEEEEc--CCCchhhhhhhc----cccEEEEE--cccEEEEeChhHHHHhhhccc
Q psy14493 186 SKLKVPLISTII--GEGGSGGALAIA----VSDITLML--QYAIYSVISPEGCASILWKTS 238 (318)
Q Consensus 186 s~~~vP~IavV~--G~~~ggga~~~~----~~D~via~--~~A~i~v~gP~~~a~il~~~~ 238 (318)
+...-|++..|- |+ .-||+|... .+|+.=|. ..++-+|.-|++.++|-++++
T Consensus 1940 ~~YkQPv~vYIPp~gE-LRGGsWvVvD~tIn~~~memyAD~~sRggVLEPeg~v~IKfRre 1999 (2196)
T KOG0368|consen 1940 RQYKQPVLVYIPPMGE-LRGGSWVVVDPTINPDQMEMYADEESRGGVLEPEGVVEIKFRRE 1999 (2196)
T ss_pred HHhCCceEEEcCcchh-hcCceEEEEcCccCHHHHHHHhhhhhccccccCCceEEEEeeHH
Confidence 999999998876 65 577888754 25655444 459999999999988888754
|
|
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-07 Score=87.37 Aligned_cols=138 Identities=18% Similarity=0.185 Sum_probs=94.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh-----chHH-HHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER-----GQSE-AIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~-----g~~~-~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
..+++......+..+++.+++ ..+-+|.|.-.+.++. |...... +... .....+..+..+++|+|++|.|.|
T Consensus 31 ~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a 110 (265)
T PLN02888 31 LNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFA 110 (265)
T ss_pred ccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCee
Confidence 468899999999999987764 4566777765442332 2111111 0111 112344567778999999999999
Q ss_pred chhhhhhhccccEEEEEcccEEEEe------ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 201 GSGGALAIAVSDITLMLQYAIYSVI------SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 201 ~ggga~~~~~~D~via~~~A~i~v~------gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+|||...+..||++|+.+++.|+.. .|..+....+++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 111 ~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 186 (265)
T PLN02888 111 ITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVE 186 (265)
T ss_pred echHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEeeC
Confidence 9999999888999999999877662 34444444444445544454443 589999999999999996
|
|
| >cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-08 Score=85.61 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=68.9
Q ss_pred CCCCCH---HHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhh
Q psy14493 129 FGMAKP---EGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGA 205 (318)
Q Consensus 129 gG~~~~---~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga 205 (318)
.|.++. ..+..+.+.++.+... -||+..+||||..+... ......+...++|+++++.|.|.|+|+
T Consensus 6 ~g~I~~~~~~~~~~~~~~l~~~~~~-~~i~l~inspGG~~~~~----------~~i~~~i~~~~~pvi~~v~g~a~s~g~ 74 (160)
T cd07016 6 YGDIGSDWGVTAKEFKDALDALGDD-SDITVRINSPGGDVFAG----------LAIYNALKRHKGKVTVKIDGLAASAAS 74 (160)
T ss_pred EeEeCCCcccCHHHHHHHHHhccCC-CCEEEEEECCCCCHHHH----------HHHHHHHHhcCCCEEEEEcchHHhHHH
Confidence 355555 5677777777776655 79999999999764322 223344455579999999999999999
Q ss_pred hhhccccEEEEEcccEEEEeChhH
Q psy14493 206 LAIAVSDITLMLQYAIYSVISPEG 229 (318)
Q Consensus 206 ~~~~~~D~via~~~A~i~v~gP~~ 229 (318)
+.+..||+++|.|++.+.+-.|.+
T Consensus 75 ~ia~a~d~~~~~~~a~~~~~~~~~ 98 (160)
T cd07016 75 VIAMAGDEVEMPPNAMLMIHNPST 98 (160)
T ss_pred HHHhcCCeEEECCCcEEEEECCcc
Confidence 999899999999999998866643
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a |
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-07 Score=86.53 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=92.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHh------CCCcEEEEecC-CCCCC-chhHHhh------c------h-HHHHHHHHHHHh-
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK------FNLPIFTFIDT-PGAFP-GIDAEER------G------Q-SEAIGHSIYVMS- 186 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~------~~lPiV~lvDs-~Ga~~-~~~~e~~------g------~-~~~~~~~~~~~s- 186 (318)
.-++++...+.+..+++.+++ ..+-+|.|.-. ++++. |.....+ + . .......+..+.
T Consensus 37 ~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (287)
T PRK08788 37 RPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHR 116 (287)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999987765 34666777554 22322 2111110 0 0 011122222222
Q ss_pred --cCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHH
Q psy14493 187 --KLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADK 254 (318)
Q Consensus 187 --~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~ 254 (318)
.+++|+|+.|.|.|+|||...+..||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.+
T Consensus 117 ~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~e 196 (287)
T PRK08788 117 GFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEE 196 (287)
T ss_pred hcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHH
Confidence 57899999999999999999988899999999998776 335544444445545555555544 489999
Q ss_pred HHHcCCcceeec
Q psy14493 255 LKSIGLINKIIK 266 (318)
Q Consensus 255 a~~~G~vD~ii~ 266 (318)
+.+.|+||++++
T Consensus 197 A~~~GLV~~vv~ 208 (287)
T PRK08788 197 LHDMGLVDVLVE 208 (287)
T ss_pred HHHCCCCcEecC
Confidence 999999999996
|
|
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-07 Score=85.09 Aligned_cols=136 Identities=14% Similarity=0.155 Sum_probs=92.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh----------ch-HHHHHHHHHHHhcCCCCEEEEE
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER----------GQ-SEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~----------g~-~~~~~~~~~~~s~~~vP~IavV 196 (318)
.++++...+.+.++++.+++. .+-+|.|.-.++++. |...... .. .......+..+..+++|+|++|
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 104 (257)
T PRK06495 25 NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAV 104 (257)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 788999999999999887654 566777765444433 2111110 01 1122344566778899999999
Q ss_pred cCCCchhhhhhhccccEEEEEcccEEEEe----ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQYAIYSVI----SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~A~i~v~----gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|+|||...+..||++|+.++++|++. |--++. ....+..+...+.+.+ .+++.++.+.|+||++++
T Consensus 105 ~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~-~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~ 181 (257)
T PRK06495 105 NGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLAGGG-KHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLP 181 (257)
T ss_pred CCeeehhHHHHHHhCCEEEecCCCEeeChhhccCccccH-HHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceecC
Confidence 99999999999989999999999887762 111111 1222333333444443 489999999999999996
|
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-07 Score=86.75 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=92.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhhc-----hHHH--HHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEERG-----QSEA--IGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~g-----~~~~--~~~~~~~~s~~~vP~IavV~G 198 (318)
...+++......+..+++.+++. .+-+|.|.-.+.++. |....... .... ...........++|+|++|.|
T Consensus 23 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G 102 (254)
T PRK08259 23 VRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSG 102 (254)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECC
Confidence 44689999999999999887654 455666655433322 11111110 0000 011111223568999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|||...+..||++||.++++|++ +.|..+......+..+...+.+.+ .+++.++.+.|+||+|++
T Consensus 103 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~ 180 (254)
T PRK08259 103 YAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVP 180 (254)
T ss_pred EEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeC
Confidence 99999999988899999999988765 234444444444445544555543 489999999999999996
|
|
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-07 Score=87.41 Aligned_cols=139 Identities=16% Similarity=0.168 Sum_probs=94.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCC------------CCCCchhHH-----------h-hc--hH-H-HH
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTP------------GAFPGIDAE-----------E-RG--QS-E-AI 178 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~------------Ga~~~~~~e-----------~-~g--~~-~-~~ 178 (318)
...++++.....+.++++.++. ..+-+|.|.-.+ |..+....+ . .. .. . ..
T Consensus 45 ~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (302)
T PRK08321 45 VRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHI 124 (302)
T ss_pred cccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHH
Confidence 4468899999999999988764 456777775432 232221000 0 00 00 0 11
Q ss_pred HHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEE-cccEEEEe------ChhHHHHhhhccccchHHHHHHh---
Q psy14493 179 GHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLML-QYAIYSVI------SPEGCASILWKTSKRASDAAEAL--- 248 (318)
Q Consensus 179 ~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~-~~A~i~v~------gP~~~a~il~~~~~~~~~a~e~~--- 248 (318)
......+..+++|+|++|.|.|+|||...+..||++|+. ++++|++. .|.++....+.+..+...+.+.+
T Consensus 125 ~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG 204 (302)
T PRK08321 125 LEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLG 204 (302)
T ss_pred HHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcC
Confidence 123345667889999999999999999999899999999 57888762 24444444455555555555544
Q ss_pred -cccHHHHHHcCCcceeec
Q psy14493 249 -GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 -~~~a~~a~~~G~vD~ii~ 266 (318)
.+++.++.+.|+||++++
T Consensus 205 ~~~~A~eA~~~GLv~~vv~ 223 (302)
T PRK08321 205 RTYSAEEAHDMGAVNAVVP 223 (302)
T ss_pred CccCHHHHHHCCCceEeeC
Confidence 489999999999999997
|
|
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-07 Score=86.00 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=95.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh------------chHHHHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER------------GQSEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~------------g~~~~~~~~~~~~s~~~vP~I 193 (318)
.-.+++......+.++++.++.. .+-+|.|.-.++++. |...... .........+..+..+++|+|
T Consensus 26 ~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 105 (260)
T PRK07827 26 NRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVI 105 (260)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 34688999999999999877654 567777766554433 1111100 011233445667778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|.|||+..+..||++||.+++.|++ +.|..++....++.. ...+.+.+ .+++.++++.|+||+
T Consensus 106 aav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~ 184 (260)
T PRK07827 106 AAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTA 184 (260)
T ss_pred EEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCccc
Confidence 9999999999999988899999999998877 234444444444432 22333433 479999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+.+
T Consensus 185 v~~ 187 (260)
T PRK07827 185 AAD 187 (260)
T ss_pred chH
Confidence 874
|
|
| >TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.1e-07 Score=89.06 Aligned_cols=138 Identities=19% Similarity=0.199 Sum_probs=98.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chh----HH-------hhchHHH-HHHHHHHHhcCCCCEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GID----AE-------ERGQSEA-IGHSIYVMSKLKVPLI 193 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~----~e-------~~g~~~~-~~~~~~~~s~~~vP~I 193 (318)
.-+++....+.+..+++.+.. ..+-+|.|.-+++ ++. |.. .+ ....+.. ....+..+..+++|+|
T Consensus 49 ~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVI 128 (360)
T TIGR03200 49 YNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVI 128 (360)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 357899999999999987654 5688888876552 332 111 11 0111111 2234556777899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
+.|.|.|.|||...+..||++|+.++++|++ +.|.++++...++..+...+.+.+ .+++.+|.+.|+||+
T Consensus 129 AAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~ 208 (360)
T TIGR03200 129 CRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMD 208 (360)
T ss_pred EEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChhe
Confidence 9999999999999988899999999998887 345555555555555555555543 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 209 VVp 211 (360)
T TIGR03200 209 VVP 211 (360)
T ss_pred ecC
Confidence 997
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK06072 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-07 Score=85.20 Aligned_cols=136 Identities=14% Similarity=0.091 Sum_probs=92.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhhc-----h-HHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEERG-----Q-SEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~g-----~-~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
...+++....+.+.++++.+++. .+-+|.|.-++.++. |.....+. . .......+..+..+++|+|++|.|.
T Consensus 20 ~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 99 (248)
T PRK06072 20 KLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGV 99 (248)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 45789999999999999887654 456677765443332 21111110 1 1122334556777889999999999
Q ss_pred CchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 200 GGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 200 ~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
|.|||......||++||.+++.|++ +.|..+......+..+. .+.+.+ .+++.++.+.|+||.+
T Consensus 100 a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 100 TAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred eehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc
Confidence 9999998888899999999987765 23444444444444442 344433 4899999999999953
|
|
| >PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=90.93 Aligned_cols=152 Identities=11% Similarity=0.059 Sum_probs=102.8
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC-CCCC-chhHHhh---------
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP-GAFP-GIDAEER--------- 172 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~-Ga~~-~~~~e~~--------- 172 (318)
++|.-..|.-|+|. ...+++......+.++++.++.. .+-+|.|.-.+ .++. |......
T Consensus 9 ~~~~v~~itLnrP~---------~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 79 (342)
T PRK05617 9 VEGGVGVITLNRPK---------ALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDP 79 (342)
T ss_pred EECCEEEEEECCCc---------cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCc
Confidence 34544445555554 44678999999999999877654 46677776655 2322 2111110
Q ss_pred ----chHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchH
Q psy14493 173 ----GQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRAS 242 (318)
Q Consensus 173 ----g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~ 242 (318)
.........+..+..+++|+|++|.|.|.|||+.....||++||.++++|++ +.|.++.+....+... .
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~ 158 (342)
T PRK05617 80 LAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-A 158 (342)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-H
Confidence 0111223445567788999999999999999999988999999999998877 3455555554444333 3
Q ss_pred HHHHHh----cccHHHHHHcCCcceeec
Q psy14493 243 DAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 243 ~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.+.+.+ .+++.++.+.|+|+++++
T Consensus 159 ~a~~llltG~~i~A~eA~~~GLv~~vv~ 186 (342)
T PRK05617 159 LGTYLALTGARISAADALYAGLADHFVP 186 (342)
T ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecC
Confidence 444443 489999999999999997
|
|
| >PLN02267 enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.1e-07 Score=81.50 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHHHHHhCC--CcEEEEecCC-----CCCCchhH------Hh-hchHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 131 MAKPEGYRKAVRLMHIAEKFN--LPIFTFIDTP-----GAFPGIDA------EE-RGQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 131 ~~~~~~~~K~~r~~~~A~~~~--lPiV~lvDs~-----Ga~~~~~~------e~-~g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
+++......+.++++.+.... ..+|.+...+ |+.+.+-. +. ..........+.++..+++|+|++|
T Consensus 22 al~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 101 (239)
T PLN02267 22 RLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAV 101 (239)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 588999999999998876553 3456555543 33332110 00 0111223445566778899999999
Q ss_pred cCCCchhhhhhhccccEEEEEcc-cEEEE-------eChhHHHHhhhccccchHHH-HHHh----cccHHHHHHcCCcce
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQY-AIYSV-------ISPEGCASILWKTSKRASDA-AEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~-A~i~v-------~gP~~~a~il~~~~~~~~~a-~e~~----~~~a~~a~~~G~vD~ 263 (318)
.|.|.|||+..+..||++||.++ +++++ ..|.++...+. ...+...+ .+.+ .+++.++.+.|+||+
T Consensus 102 ~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~-~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~ 180 (239)
T PLN02267 102 TGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLR-AKIGSPAARRDVLLRAAKLTAEEAVEMGIVDS 180 (239)
T ss_pred CCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHH-HHcChHHHHHHHHHcCCcCCHHHHHHCCCcce
Confidence 99999999998888999999854 66654 23555544443 33443444 2333 479999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 181 vv~ 183 (239)
T PLN02267 181 AHD 183 (239)
T ss_pred ecC
Confidence 996
|
|
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.4e-07 Score=84.14 Aligned_cols=137 Identities=16% Similarity=0.149 Sum_probs=96.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC--CCCC-chhHHhhc----------hHHH-HHHHHHHHhcCCCCEEE
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP--GAFP-GIDAEERG----------QSEA-IGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~--Ga~~-~~~~e~~g----------~~~~-~~~~~~~~s~~~vP~Ia 194 (318)
.+++......+.++++..++. .+-+|.|.-.+ +++. |.....+. .+.. ....+..+..+++|+|+
T Consensus 33 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 112 (278)
T PLN03214 33 NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVC 112 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 688999999999999877654 46677775543 2332 22111110 0111 12245567788999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEE------e-ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSV------I-SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v------~-gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
+|.|.|+|||...+..||++|+.++++|++ + -|..+....+....+...+.+.+ .+++.++.+.|+||+
T Consensus 113 aV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~ 192 (278)
T PLN03214 113 AIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDE 192 (278)
T ss_pred EEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcE
Confidence 999999999999988999999999998876 3 25455555555555555555554 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
|++
T Consensus 193 vv~ 195 (278)
T PLN03214 193 VVP 195 (278)
T ss_pred ecC
Confidence 996
|
|
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-07 Score=86.41 Aligned_cols=137 Identities=12% Similarity=0.079 Sum_probs=93.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-----chhHHhhc----------------------------
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-----GIDAEERG---------------------------- 173 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-----~~~~e~~g---------------------------- 173 (318)
...++++.....+..+++.++. ..+-+|.|.-.+.++. .+-.+...
T Consensus 30 ~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (302)
T PRK08272 30 KGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMID 109 (302)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccccccccccchhh
Confidence 4578999999999999988765 4577777766443332 21110000
Q ss_pred --hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChh-----HHHHhhhccccchHHHHH
Q psy14493 174 --QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPE-----GCASILWKTSKRASDAAE 246 (318)
Q Consensus 174 --~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~-----~~a~il~~~~~~~~~a~e 246 (318)
........+..+..+++|+|+.|.|.|+|||...+..||++|+.++++|++-.-. ... .+....+...+.+
T Consensus 110 ~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~~--~~~~~vG~~~A~~ 187 (302)
T PRK08272 110 YQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATG--MWAYRLGPQRAKR 187 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChHH--HHHHHhhHHHHHH
Confidence 0112233455677889999999999999999999989999999999887652111 111 2222334444555
Q ss_pred Hh----cccHHHHHHcCCcceeec
Q psy14493 247 AL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 247 ~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.+ .+++.++.+.|+|+++++
T Consensus 188 llltG~~i~a~eA~~~GLv~~vv~ 211 (302)
T PRK08272 188 LLFTGDCITGAQAAEWGLAVEAVP 211 (302)
T ss_pred HHHcCCccCHHHHHHcCCCceecC
Confidence 44 489999999999999996
|
|
| >PLN02921 naphthoate synthase | Back alignment and domain information |
|---|
Probab=98.75 E-value=3e-07 Score=87.70 Aligned_cols=139 Identities=20% Similarity=0.280 Sum_probs=96.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-CCCC-chhHHhhc--------hHHH--HHHHHHHHhcCCCCEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTP-GAFP-GIDAEERG--------QSEA--IGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~-Ga~~-~~~~e~~g--------~~~~--~~~~~~~~s~~~vP~Ia 194 (318)
...+++......+.++++.++. ..+-+|.|.-++ .++. |....... .... ....+..+..+++|+|+
T Consensus 87 ~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA 166 (327)
T PLN02921 87 RRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIA 166 (327)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEE
Confidence 4478999999999999988764 457777776654 2332 21111110 0111 12234567778999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEEeC------hhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSVIS------PEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v~g------P~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
.|.|.|+|||......||++||.+++.|++.. |.++.........+...+.+.+ .+++.++.+.|+||++
T Consensus 167 aVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~v 246 (327)
T PLN02921 167 MVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTV 246 (327)
T ss_pred EECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEE
Confidence 99999999999998889999999999887632 3333333344445555555554 4899999999999999
Q ss_pred ec
Q psy14493 265 IK 266 (318)
Q Consensus 265 i~ 266 (318)
++
T Consensus 247 v~ 248 (327)
T PLN02921 247 VP 248 (327)
T ss_pred eC
Confidence 96
|
|
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-07 Score=81.44 Aligned_cols=124 Identities=23% Similarity=0.268 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEc---CCCchhhh
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKFN-LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTII---GEGGSGGA 205 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~~-lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~---G~~~ggga 205 (318)
|.+++....-+.|.++.|.+.+ -+|+..+||||..+... ..+ ...+...++|+++.|. |.|.++|+
T Consensus 8 G~I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPGG~v~~~-------~~I---~~~i~~~~~pvv~~v~p~g~~AaSag~ 77 (172)
T cd07015 8 GQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRADAA-------GNI---VQRIQQSKIPVIIYVYPPGASAASAGT 77 (172)
T ss_pred eEECHhHHHHHHHHHHHHhcCCCCeEEEEEECCCCCHHHH-------HHH---HHHHHhcCcCEEEEEecCCCeehhHHH
Confidence 7788888889999999998765 57999999999765532 122 3334456799999999 99999999
Q ss_pred hhhccccEEEEEcccEEEEeChhHHHHhhhc-----c-ccc--------hH----------HHHHH-----hcccHHHHH
Q psy14493 206 LAIAVSDITLMLQYAIYSVISPEGCASILWK-----T-SKR--------AS----------DAAEA-----LGLTADKLK 256 (318)
Q Consensus 206 ~~~~~~D~via~~~A~i~v~gP~~~a~il~~-----~-~~~--------~~----------~a~e~-----~~~~a~~a~ 256 (318)
+.+..||.++|.|++.++..+|-... .. . ..+ .. +.++. +-+++.+|.
T Consensus 78 ~I~~a~~~i~m~p~s~iG~~~pi~~~---g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~ 154 (172)
T cd07015 78 YIALGSHLIAMAPGTSIGACRPILGY---SQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEAL 154 (172)
T ss_pred HHHHhcCceEECCCCEEEEccccccC---CCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHH
Confidence 99988999999999999999985310 00 0 000 00 01111 137999999
Q ss_pred HcCCcceeec
Q psy14493 257 SIGLINKIIK 266 (318)
Q Consensus 257 ~~G~vD~ii~ 266 (318)
+.|+||.|..
T Consensus 155 ~~G~iD~ia~ 164 (172)
T cd07015 155 KYGVIEVVAR 164 (172)
T ss_pred HcCCceeeeC
Confidence 9999999996
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-07 Score=85.74 Aligned_cols=139 Identities=18% Similarity=0.186 Sum_probs=92.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCC-----Cchh---HH-----------------------hhc-h
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAF-----PGID---AE-----------------------ERG-Q 174 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~-----~~~~---~e-----------------------~~g-~ 174 (318)
...+++....+.+.++++.+.. ..+-+|.|.-++.++ +.+- .+ ... .
T Consensus 24 ~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (288)
T PRK08290 24 ARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYARE 103 (288)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccchhhHHHHH
Confidence 4578899999999999987654 457777776544333 2210 00 000 0
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE----eChhHHHHhhhccccchHHHHHHh--
Q psy14493 175 SEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV----ISPEGCASILWKTSKRASDAAEAL-- 248 (318)
Q Consensus 175 ~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v----~gP~~~a~il~~~~~~~~~a~e~~-- 248 (318)
.......+..+..+++|+|++|.|.|+|||...+..||++|+.++++|++ +|-.+.....++...+...+.+.+
T Consensus 104 ~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~~~~~~~l~~~iG~~~A~~lllt 183 (288)
T PRK08290 104 WEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIPGVEYFAHPWELGPRKAKELLFT 183 (288)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcCcchHHHHHHHhhHHHHHHHHHc
Confidence 01122334456778999999999999999999988899999999887765 121122233333334444444443
Q ss_pred --cccHHHHHHcCCcceeec
Q psy14493 249 --GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 --~~~a~~a~~~G~vD~ii~ 266 (318)
.+++.++.+.|+||++++
T Consensus 184 G~~i~A~eA~~~GLV~~vv~ 203 (288)
T PRK08290 184 GDRLTADEAHRLGMVNRVVP 203 (288)
T ss_pred CCCCCHHHHHHCCCccEeeC
Confidence 489999999999999996
|
|
| >KOG1680|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-07 Score=87.14 Aligned_cols=138 Identities=20% Similarity=0.176 Sum_probs=100.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCCc-hhHHhhc-------hHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFPG-IDAEERG-------QSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~~-~~~e~~g-------~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
-.++.+.....+.+++...++ ...|+|.|.-+++++.. .+.+..- ......+.+..++..+.|+|+.|.|-
T Consensus 58 ~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~ 137 (290)
T KOG1680|consen 58 LNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGF 137 (290)
T ss_pred hccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeece
Confidence 357778878777777766554 56999999999888774 2211111 11223445555666889999999999
Q ss_pred CchhhhhhhccccEEEEEcccEEEEeChh------HHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 200 GGSGGALAIAVSDITLMLQYAIYSVISPE------GCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 200 ~~ggga~~~~~~D~via~~~A~i~v~gP~------~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|||.-...+||++||.++|.|++..++ .+.+.-+.+..+...|.|.. ++++++|.+.|+|+.|++
T Consensus 138 AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp 214 (290)
T KOG1680|consen 138 ALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVVP 214 (290)
T ss_pred eeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEeec
Confidence 99999999889999999999999885443 33334444555555666654 589999999999999997
|
|
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.1e-07 Score=82.91 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=92.1
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh---c-------hHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 130 GMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER---G-------QSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~---g-------~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
.++++.....+..+++.++. ..+-+|.|.-.+.++. |...... . ........+..+..+++|+|+.|.
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 102 (249)
T PRK07938 23 NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVH 102 (249)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 78899999999999988764 4566777765443322 1111110 0 011223445567788999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEEe----ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSVI----SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v~----gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|+|||...+..||++|+.++++|++. |--++. ....+..+...+.+.+ .+++.++.+.|+|+++++
T Consensus 103 G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~g~~-~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 178 (249)
T PRK07938 103 GFCLGGGIGLVGNADVIVASDDATFGLPEVDRGALGAA-THLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVP 178 (249)
T ss_pred CEEeehHHHHHHhCCEEEEeCCCEeeCccceecCchhH-HHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeC
Confidence 9999999999989999999999877662 211222 2223333444444443 589999999999999996
|
|
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.9e-07 Score=79.33 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCc-EEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhc
Q psy14493 132 AKPEGYRKAVRLMHIAEKF-NLP-IFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIA 209 (318)
Q Consensus 132 ~~~~~~~K~~r~~~~A~~~-~lP-iV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~ 209 (318)
.+..+...+.+.++.+.+. ++. ||.-.+++|..+... ..+...+..+...++|+|+.|.|.|.|+|.+.+.
T Consensus 19 ~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~-------~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~ 91 (177)
T cd07014 19 QGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS-------EVIRAELAAARAAGKPVVASGGGNAASGGYWIST 91 (177)
T ss_pred CCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHH-------HHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHH
Confidence 3344567777778776554 454 455567777543321 2344456667777899999999999999999998
Q ss_pred cccEEEEEcccEEEEeChhHHHH----hhh------------ccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 210 VSDITLMLQYAIYSVISPEGCAS----ILW------------KTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 210 ~~D~via~~~A~i~v~gP~~~a~----il~------------~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.||+++|.|++.++..|....-. .+. .+....+...+.+ .+++.+|.+.|+||++..
T Consensus 92 a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~ 168 (177)
T cd07014 92 PANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGS 168 (177)
T ss_pred hCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCC
Confidence 99999999999999988743211 111 1111122222333 379999999999999996
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
| >PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=5e-07 Score=87.91 Aligned_cols=152 Identities=11% Similarity=0.099 Sum_probs=103.6
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------c-h-
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------G-Q- 174 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------g-~- 174 (318)
++|.-..|.-|++. .-.+++......+..+++.++. ..+-+|.|.-.+.++. |.....+ . .
T Consensus 17 ~~~~v~~ItLnrP~---------~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 87 (379)
T PLN02874 17 EKGRVRVITLNRPR---------QLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSC 87 (379)
T ss_pred EECCEEEEEECCCc---------cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHH
Confidence 45544445566654 3468899999999999988765 4577887766554433 2111111 0 0
Q ss_pred ---HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHH
Q psy14493 175 ---SEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAA 245 (318)
Q Consensus 175 ---~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~ 245 (318)
.......+..+..+++|+|++|.|.|.|||...+..||++|+.++++|++ +.|.+++.....+..+. .+.
T Consensus 88 ~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~ 166 (379)
T PLN02874 88 LEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGE 166 (379)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHH
Confidence 11112234456678899999999999999999988899999999998877 45666665555554332 333
Q ss_pred HHh----cccHHHHHHcCCcceeec
Q psy14493 246 EAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 246 e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+.+ .+++.++.+.|+||.+++
T Consensus 167 ~l~ltG~~i~a~eA~~~GLv~~vv~ 191 (379)
T PLN02874 167 YLALTGARLNGKEMVACGLATHFVP 191 (379)
T ss_pred HHHHcCCcccHHHHHHcCCccEEeC
Confidence 332 489999999999999996
|
|
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.7e-07 Score=83.90 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=99.9
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCC-----CchhH-H---hh--
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAF-----PGIDA-E---ER-- 172 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~-----~~~~~-e---~~-- 172 (318)
.+|.-..|.-|+|. ...+++......+..+++.++. ..+-+|.|.-.+.++ +.+.. + ..
T Consensus 11 ~~~~Va~ItLnrP~---------~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~ 81 (298)
T PRK12478 11 TAGPVATITLNRPE---------QLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMT 81 (298)
T ss_pred ccCCEEEEEecCCc---------ccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccc
Confidence 34544445556664 4578999999999999988765 467888887654333 22100 0 00
Q ss_pred ----chHHHH----------HHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEe-----ChhHHHHh
Q psy14493 173 ----GQSEAI----------GHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVI-----SPEGCASI 233 (318)
Q Consensus 173 ----g~~~~~----------~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~-----gP~~~a~i 233 (318)
...... ...+..+..+++|+|+.|.|.|+|||...+..||++|+.++++|++- |.-.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~~~~ 161 (298)
T PRK12478 82 DGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTGMW 161 (298)
T ss_pred ccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCchhHH
Confidence 000010 12344567789999999999999999999888999999999988762 22111111
Q ss_pred hhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 234 LWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 234 l~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
. ...+...+.+.+ .+++.++++.|+|+++++
T Consensus 162 ~--~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~ 196 (298)
T PRK12478 162 L--YRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVP 196 (298)
T ss_pred H--HHhhHHHHHHHHHcCCccCHHHHHHcCCcceecC
Confidence 2 224444455554 489999999999999996
|
|
| >cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Probab=98.65 E-value=4e-07 Score=77.70 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=69.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCC--CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhh
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFN--LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGA 205 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~--lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga 205 (318)
..|.+++.....+.+.++.+.+.. -+||.-+||+|..+... ..+.. .+...++|+++.+.|.|.++|.
T Consensus 4 i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~-------~~i~~---~l~~~~kpvva~~~g~~~s~g~ 73 (161)
T cd00394 4 INGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAG-------MNIVD---ALQASRKPVIAYVGGQAASAGY 73 (161)
T ss_pred EEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHH-------HHHHH---HHHHhCCCEEEEECChhHHHHH
Confidence 457788888888999998877643 56777789988654322 22333 3444458999999999999999
Q ss_pred hhhccccEEEEEcccEEEEeChh
Q psy14493 206 LAIAVSDITLMLQYAIYSVISPE 228 (318)
Q Consensus 206 ~~~~~~D~via~~~A~i~v~gP~ 228 (318)
+.+..||.++|.|++.+.+.||.
T Consensus 74 ~la~~~d~~~~~~~a~~~~~g~~ 96 (161)
T cd00394 74 YIATAANKIVMAPGTRVGSHGPI 96 (161)
T ss_pred HHHhCCCEEEECCCCEEEEeeeE
Confidence 88888999999999999998775
|
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-06 Score=91.79 Aligned_cols=138 Identities=17% Similarity=0.172 Sum_probs=100.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------------chHHHHHHHHHHHhcCCCCEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------------GQSEAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------------g~~~~~~~~~~~~s~~~vP~Ia 194 (318)
-.+++......+..+++.++. ..+-+|.|.-.+.++. |-....+ .........+..+..+++|+|+
T Consensus 28 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIA 107 (715)
T PRK11730 28 VNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVA 107 (715)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 467899999999999987754 4567777766554333 2111110 0111233445667788999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
.|.|.|.|||...+..||++|+.++++|++ +-|..+.....++..+...+.+.+ .+++.++.+.|+||++
T Consensus 108 av~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~v 187 (715)
T PRK11730 108 AINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAV 187 (715)
T ss_pred EECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEe
Confidence 999999999999998999999999998887 346666666666666655555554 4899999999999999
Q ss_pred ec
Q psy14493 265 IK 266 (318)
Q Consensus 265 i~ 266 (318)
++
T Consensus 188 v~ 189 (715)
T PRK11730 188 VA 189 (715)
T ss_pred cC
Confidence 96
|
|
| >PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-06 Score=84.02 Aligned_cols=152 Identities=16% Similarity=0.136 Sum_probs=102.8
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------c---
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------G--- 173 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------g--- 173 (318)
..|.-..|.-|.|. .-.+++......+.++++.+.+ ..+-+|.|.-.+.++. |-....+ +
T Consensus 43 ~~g~v~~ItLNRP~---------~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~ 113 (401)
T PLN02157 43 GSGCSRTAILNRPP---------ALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPD 113 (401)
T ss_pred EECCEEEEEECCCC---------ccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchH
Confidence 45554445566664 4468999999999999877654 5567777765444433 1111110 1
Q ss_pred ----hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHH
Q psy14493 174 ----QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASD 243 (318)
Q Consensus 174 ----~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~ 243 (318)
.+.........+..+++|+|++|.|.|.|||.-.+..||++|+++++.|++ +-|..+++....+..+. .
T Consensus 114 ~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~ 192 (401)
T PLN02157 114 AIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-L 192 (401)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-H
Confidence 011222334567788999999999999999999988999999999988877 34665555544443332 2
Q ss_pred HHHHh----cccHHHHHHcCCcceeec
Q psy14493 244 AAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 244 a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+.+.. .+++.++.+.|++|.+++
T Consensus 193 a~~L~LTG~~i~A~eA~~~GLv~~vVp 219 (401)
T PLN02157 193 GEYLGLTGLKLSGAEMLACGLATHYIR 219 (401)
T ss_pred HHHHHHcCCcCCHHHHHHcCCceEEeC
Confidence 33332 479999999999999996
|
|
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.5e-06 Score=83.00 Aligned_cols=151 Identities=14% Similarity=0.118 Sum_probs=100.5
Q ss_pred cCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------ch---
Q psy14493 106 NGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------GQ--- 174 (318)
Q Consensus 106 ~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------g~--- 174 (318)
+|.-..|.-|++. .-.+++......+.++++.+.. ..+-+|.|.-++.++. |-..... +.
T Consensus 16 ~~~i~~ItLnRP~---------~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~ 86 (381)
T PLN02988 16 KSSVRILTLNRPK---------QLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRL 86 (381)
T ss_pred ECCEEEEEECCCC---------ccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhH
Confidence 4443344455554 3468899999999999977654 4577777766553333 2111110 10
Q ss_pred ----HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHH
Q psy14493 175 ----SEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDA 244 (318)
Q Consensus 175 ----~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a 244 (318)
+.........+...++|+|++|.|.|.|||...+..||++|++++++|++ +-|..+++....+..+. .+
T Consensus 87 ~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~ 165 (381)
T PLN02988 87 GANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-FG 165 (381)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-HH
Confidence 11112234466778999999999999999999988899999999988776 34555555555443332 22
Q ss_pred HHHh----cccHHHHHHcCCcceeec
Q psy14493 245 AEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 245 ~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.+.+ .+++.++.+.|++|.+++
T Consensus 166 ~~l~LTG~~i~a~eA~~~GLv~~vv~ 191 (381)
T PLN02988 166 EYVGLTGARLDGAEMLACGLATHFVP 191 (381)
T ss_pred HHHHHcCCCCCHHHHHHcCCceEecC
Confidence 2222 479999999999999996
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-06 Score=90.78 Aligned_cols=138 Identities=14% Similarity=0.186 Sum_probs=95.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCcEEEE-ecCC-----CCCCchhH------HhhchHHHHHHHHHHHhcCCCCEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKF-NLPIFTF-IDTP-----GAFPGIDA------EERGQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~-~lPiV~l-vDs~-----Ga~~~~~~------e~~g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
..+++....+.+..+++.++.. .+-.|.| ...+ |+.+.+-. +...........+..+..+++|+|+.
T Consensus 23 ~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 102 (699)
T TIGR02440 23 MNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAA 102 (699)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4678999999999999877654 4555554 3333 33333211 00001122344556788889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcc--cEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQY--AIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~--A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
|.|.|+|||...+..||++||.++ ++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||+
T Consensus 103 VnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~ 182 (699)
T TIGR02440 103 IHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDD 182 (699)
T ss_pred ECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcE
Confidence 999999999999888999999986 56665 345555555556555555555554 479999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 183 vv~ 185 (699)
T TIGR02440 183 VVP 185 (699)
T ss_pred ecC
Confidence 996
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.9e-06 Score=80.94 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=96.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------c-------hHHHHHHHHHHHhcCCCCE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------G-------QSEAIGHSIYVMSKLKVPL 192 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------g-------~~~~~~~~~~~~s~~~vP~ 192 (318)
.-.+++......+.++++..++ ..+-+|.|.-++.++. |-..... + .+.....+...+...++|+
T Consensus 62 ~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPv 141 (407)
T PLN02851 62 SLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPN 141 (407)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 3468999999999999987654 5677777765444433 1111100 0 1122334445566788999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcc
Q psy14493 193 ISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLIN 262 (318)
Q Consensus 193 IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD 262 (318)
|++|.|.|.|||...+..||++|+++++.+++ +.|..+++....+..+.. +.+.. .+++.++.+.|+++
T Consensus 142 IA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~-g~~L~LTG~~i~a~eA~~~GLa~ 220 (407)
T PLN02851 142 VAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYL-GEYLALTGQKLNGVEMIACGLAT 220 (407)
T ss_pred EEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHH-HHHHHHhCCcCCHHHHHHCCCce
Confidence 99999999999999998999999999988777 346665555555443321 22222 47999999999999
Q ss_pred eeec
Q psy14493 263 KIIK 266 (318)
Q Consensus 263 ~ii~ 266 (318)
.+++
T Consensus 221 ~~v~ 224 (407)
T PLN02851 221 HYCL 224 (407)
T ss_pred eecC
Confidence 9996
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-06 Score=89.20 Aligned_cols=139 Identities=16% Similarity=0.150 Sum_probs=98.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------------chHHHHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------------GQSEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------------g~~~~~~~~~~~~s~~~vP~I 193 (318)
.-.+++......+.++++.+.. ..+-+|.|.-++.++. |-....+ .........+..+..+++|+|
T Consensus 27 ~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvI 106 (714)
T TIGR02437 27 SVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTV 106 (714)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 3467899999999999987754 4566677665443332 1111110 011223345567778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|.|||.-....||++|+.++++|++ +-|..+....+++..+...+.+.+ .+++.++.+.|+||+
T Consensus 107 Aai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~ 186 (714)
T TIGR02437 107 AAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDA 186 (714)
T ss_pred EEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcE
Confidence 9999999999999988899999999998887 235555555555555555555554 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 187 vv~ 189 (714)
T TIGR02437 187 VVT 189 (714)
T ss_pred eeC
Confidence 996
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.2e-06 Score=88.90 Aligned_cols=138 Identities=14% Similarity=0.220 Sum_probs=95.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCC-Cc-EEEEecCCCCCC-chhHHhh----------chHHHHHHHHHHHhcCCCCEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKFN-LP-IFTFIDTPGAFP-GIDAEER----------GQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~~-lP-iV~lvDs~Ga~~-~~~~e~~----------g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
-.+++......+..+++.+++.. +- +|.+...++++. |-....+ .........+..+..+++|+|+.
T Consensus 35 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa 114 (737)
T TIGR02441 35 VNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAA 114 (737)
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 36788999999999998876554 44 344455443433 1111111 01123345566778889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEccc--EEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYA--IYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A--~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
|.|.|.|||...+..||++||++++ ++++ +-|..+....+++..+...+.+.+ .+++.++++.|+||+
T Consensus 115 v~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~ 194 (737)
T TIGR02441 115 ISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQ 194 (737)
T ss_pred ECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeE
Confidence 9999999999998889999999984 5555 234444555555555555555554 479999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 195 vv~ 197 (737)
T TIGR02441 195 LVD 197 (737)
T ss_pred ecC
Confidence 997
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=76.93 Aligned_cols=134 Identities=20% Similarity=0.261 Sum_probs=93.3
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIAEKF--NLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A~~~--~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
++..+.+|.+++..+..+.+.+...+.. .-||+..+||||..+.. .......+...+.|+++++.|.|
T Consensus 35 ~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~----------g~~I~d~i~~~~~~v~t~~~G~a 104 (207)
T PRK12553 35 ERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTA----------GDAIYDTIQFIRPDVQTVCTGQA 104 (207)
T ss_pred CeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHH----------HHHHHHHHHhcCCCcEEEEEeeh
Confidence 3444678888999999988888776654 57999999999965432 23334445555679999999999
Q ss_pred chhhhhhhcccc--EEEEEcccEEEEeChh--HH-----HHhh-hcc----------------c-cchHHHHHHh----c
Q psy14493 201 GSGGALAIAVSD--ITLMLQYAIYSVISPE--GC-----ASIL-WKT----------------S-KRASDAAEAL----G 249 (318)
Q Consensus 201 ~ggga~~~~~~D--~via~~~A~i~v~gP~--~~-----a~il-~~~----------------~-~~~~~a~e~~----~ 249 (318)
++.|++.+..+| .++|.|++.+.+-.|. +. ..+- ..+ . ...++..+.+ -
T Consensus 105 aSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~ 184 (207)
T PRK12553 105 ASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKW 184 (207)
T ss_pred hhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcc
Confidence 999999987787 5899999999888775 21 1100 000 0 0001111111 2
Q ss_pred ccHHHHHHcCCcceeec
Q psy14493 250 LTADKLKSIGLINKIIK 266 (318)
Q Consensus 250 ~~a~~a~~~G~vD~ii~ 266 (318)
+++.+|.+.|+||+|++
T Consensus 185 lta~EA~e~GliD~I~~ 201 (207)
T PRK12553 185 LTAEEAKDYGLVDQIIT 201 (207)
T ss_pred ccHHHHHHcCCccEEcC
Confidence 69999999999999996
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-05 Score=84.82 Aligned_cols=138 Identities=15% Similarity=0.193 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC-CCCC-chhHHhh----------chHHHHHHHHHHHhcCCCCEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP-GAFP-GIDAEER----------GQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~-Ga~~-~~~~e~~----------g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
..+++......+..+++.++.. .+-+|.|.-.+ +++. |-....+ .........+.++..+++|+|+.
T Consensus 28 ~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 107 (708)
T PRK11154 28 MNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAA 107 (708)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3578999999999999877644 46666665322 2222 2111110 01112233556777889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEccc--EEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYA--IYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A--~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
|.|.|.|||...+..||++|+.+++ +|++ +-|..+....+++..+...+.+.+ .+++.++.+.|+||+
T Consensus 108 V~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~ 187 (708)
T PRK11154 108 IHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDD 187 (708)
T ss_pred ECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcE
Confidence 9999999999998889999999974 6665 235555555555555655555554 479999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 188 vv~ 190 (708)
T PRK11154 188 VVP 190 (708)
T ss_pred ecC
Confidence 996
|
|
| >PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.4e-06 Score=75.10 Aligned_cols=134 Identities=21% Similarity=0.225 Sum_probs=90.1
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIAEK--FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A~~--~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
++..+.+|.+++..+..+.+-+...+. ..-||..++||||.....+ ......+...+.|+++++.|.|
T Consensus 31 ~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g----------~~I~d~i~~~~~~v~t~~~G~a 100 (200)
T PRK00277 31 ERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG----------LAIYDTMQFIKPDVSTICIGQA 100 (200)
T ss_pred CcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHH----------HHHHHHHHhcCCCEEEEEEeEe
Confidence 344567888888888888777766554 3579999999999654332 2233344555679999999999
Q ss_pred chhhhhhhcc--ccEEEEEcccEEEEeChhHHH----Hhhh-------c-----------cc-cchHHHHHHh----ccc
Q psy14493 201 GSGGALAIAV--SDITLMLQYAIYSVISPEGCA----SILW-------K-----------TS-KRASDAAEAL----GLT 251 (318)
Q Consensus 201 ~ggga~~~~~--~D~via~~~A~i~v~gP~~~a----~il~-------~-----------~~-~~~~~a~e~~----~~~ 251 (318)
+|.|++.+.. .+.++|.|++.+.+-.|.+.. +-+. + .. ...++..+.+ .++
T Consensus 101 aS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ls 180 (200)
T PRK00277 101 ASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMS 180 (200)
T ss_pred ccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCcccc
Confidence 9999888654 357999999999887775321 0000 0 00 0001111111 279
Q ss_pred HHHHHHcCCcceeec
Q psy14493 252 ADKLKSIGLINKIIK 266 (318)
Q Consensus 252 a~~a~~~G~vD~ii~ 266 (318)
+.+|.+.|+||+|+.
T Consensus 181 a~EA~e~GliD~Ii~ 195 (200)
T PRK00277 181 AEEAKEYGLIDEVLT 195 (200)
T ss_pred HHHHHHcCCccEEee
Confidence 999999999999997
|
|
| >cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.2e-06 Score=75.42 Aligned_cols=87 Identities=21% Similarity=0.221 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHhC-CCc-EEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccc
Q psy14493 134 PEGYRKAVRLMHIAEKF-NLP-IFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVS 211 (318)
Q Consensus 134 ~~~~~K~~r~~~~A~~~-~lP-iV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~ 211 (318)
+..++.+.+.++.+.+. ++- ||.-+||+|..+... ..+...+..+...++|+|+.+.|.|.|+|.+.+..|
T Consensus 16 ~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~-------~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aa 88 (208)
T cd07023 16 GIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVAS-------EEIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAA 88 (208)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHH-------HHHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhC
Confidence 66788888888877544 343 556678888765432 234555667777789999999999999999998889
Q ss_pred cEEEEEcccEEEEeCh
Q psy14493 212 DITLMLQYAIYSVISP 227 (318)
Q Consensus 212 D~via~~~A~i~v~gP 227 (318)
|.++|.|++.++..|.
T Consensus 89 D~i~a~~~s~~g~iG~ 104 (208)
T cd07023 89 DKIVANPTTITGSIGV 104 (208)
T ss_pred CEEEECCCCeEEeCcE
Confidence 9999999998877655
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad |
| >cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.40 E-value=4e-06 Score=72.11 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=69.5
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhh
Q psy14493 127 RNFGMAKPEGYRKAVRLMHIAEKF--NLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGG 204 (318)
Q Consensus 127 ~~gG~~~~~~~~K~~r~~~~A~~~--~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggg 204 (318)
+..|.+++..+..+.+.+..++.. .-||+..+||||..+... ......+...+.|+++++.|.|+++|
T Consensus 4 ~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~----------~~i~~~i~~~~~~v~~~~~g~aaS~~ 73 (162)
T cd07013 4 MLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAG----------MAIYDTIKFIKADVVTIIDGLAASMG 73 (162)
T ss_pred EEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHH----------HHHHHHHHhcCCCceEEEEeehhhHH
Confidence 456778888888888888776654 369999999999764322 22233344456799999999999999
Q ss_pred hhhhcccc--EEEEEcccEEEEeChh
Q psy14493 205 ALAIAVSD--ITLMLQYAIYSVISPE 228 (318)
Q Consensus 205 a~~~~~~D--~via~~~A~i~v~gP~ 228 (318)
++.+..+| ..++.|++.+.+-.|.
T Consensus 74 ~~i~~a~~~g~r~~~p~a~~~ih~~~ 99 (162)
T cd07013 74 SVIAMAGAKGKRFILPNAMMMIHQPW 99 (162)
T ss_pred HHHHHcCCCCcEEEecCEEEEEccCc
Confidence 99988888 6888899988876564
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas |
| >PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-07 Score=92.31 Aligned_cols=53 Identities=40% Similarity=0.847 Sum_probs=45.2
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhh-ccCccccccCCCCCCCCCChHHhhhhhc
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFC-NYKIQFYVFHINHGLSPSSDKWLIHCKN 317 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~-~~~~~~~~~~~~h~~~~~~~~w~~~~~~ 317 (318)
|.|+ +|+|||.||++||+.+..+.. ..+.++.++|+|||+|++|++|++||++
T Consensus 16 ~~il---vavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~ 69 (436)
T PRK10660 16 RQIL---VAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQ 69 (436)
T ss_pred CeEE---EEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHH
Confidence 6666 799999999999999887652 3356889999999999999999999874
|
|
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.6e-06 Score=83.60 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=94.5
Q ss_pred CCCCHHHHHHHHHHHHHHHh--CCCcEEEEecCCC-CCC-chh---HHh------hchHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 130 GMAKPEGYRKAVRLMHIAEK--FNLPIFTFIDTPG-AFP-GID---AEE------RGQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~--~~lPiV~lvDs~G-a~~-~~~---~e~------~g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
.+++....+.+..+++.+.. ..+-+|.|.-.++ ++. |-. .+. ..........+..+..+++|+|+.|
T Consensus 297 Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 376 (550)
T PRK08184 297 AWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALI 376 (550)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 68899999999999987763 5677777766442 222 211 000 0111222334567778899999999
Q ss_pred c-CCCchhh-hhhhccccEEEEE-------cccEEEE------eChhHHHHhhhccc-cchHHHHHHh------cccHHH
Q psy14493 197 I-GEGGSGG-ALAIAVSDITLML-------QYAIYSV------ISPEGCASILWKTS-KRASDAAEAL------GLTADK 254 (318)
Q Consensus 197 ~-G~~~ggg-a~~~~~~D~via~-------~~A~i~v------~gP~~~a~il~~~~-~~~~~a~e~~------~~~a~~ 254 (318)
. |.|+||| .-.+..||++||. ++++|++ +-|..+......+. .+...+.+++ .+++.+
T Consensus 377 ~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~e 456 (550)
T PRK08184 377 EPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADA 456 (550)
T ss_pred CCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHH
Confidence 7 9999999 7777779999999 8888777 34554444434433 4555555541 489999
Q ss_pred HHHcCCcceeec
Q psy14493 255 LKSIGLINKIIK 266 (318)
Q Consensus 255 a~~~G~vD~ii~ 266 (318)
+.+.|+|+++++
T Consensus 457 A~~~GLv~~vv~ 468 (550)
T PRK08184 457 AEELGLVTAAPD 468 (550)
T ss_pred HHHcCCcccccC
Confidence 999999999997
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-05 Score=80.85 Aligned_cols=137 Identities=15% Similarity=0.097 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCC-CC-chhH--Hh-------hchHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 130 GMAKPEGYRKAVRLMHIAEK--FNLPIFTFIDTPGA-FP-GIDA--EE-------RGQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~--~~lPiV~lvDs~Ga-~~-~~~~--e~-------~g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
.+++....+.+..+++.+.+ ..+-+|.|.-.+.+ +. |-.. +. .......-+.+..+..+++|+|+.|
T Consensus 293 Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav 372 (546)
T TIGR03222 293 NWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI 372 (546)
T ss_pred CcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 77999999999999987763 56777877664433 22 1111 00 0111222235567888899999999
Q ss_pred -cCCCchhh-hhhhccccEEEE-------EcccEEEE------eChhHHHHhhhcccc-chHHH--HHHh----cccHHH
Q psy14493 197 -IGEGGSGG-ALAIAVSDITLM-------LQYAIYSV------ISPEGCASILWKTSK-RASDA--AEAL----GLTADK 254 (318)
Q Consensus 197 -~G~~~ggg-a~~~~~~D~via-------~~~A~i~v------~gP~~~a~il~~~~~-~~~~a--~e~~----~~~a~~ 254 (318)
.|.|+||| .-.+..||++|| .++++|++ +.|..+....+.+.. +...+ .+.+ .+++.+
T Consensus 373 ~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~e 452 (546)
T TIGR03222 373 EPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEE 452 (546)
T ss_pred CCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHH
Confidence 89999999 887778999999 78888877 235544444444433 43333 2222 489999
Q ss_pred HHHcCCcceeec
Q psy14493 255 LKSIGLINKIIK 266 (318)
Q Consensus 255 a~~~G~vD~ii~ 266 (318)
+.+.|+|+++++
T Consensus 453 A~~~Glv~~vv~ 464 (546)
T TIGR03222 453 AERLGLVTAAPD 464 (546)
T ss_pred HHHcCCcccccC
Confidence 999999999986
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.1e-06 Score=71.61 Aligned_cols=134 Identities=22% Similarity=0.284 Sum_probs=89.8
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHH--HhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIA--EKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A--~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
++..+..|-+++..+..+..-+... ....-||..+++|||..+ .........+...+.|+.+++.|.|
T Consensus 16 ~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v----------~~g~~i~~~i~~~~~~v~t~~~G~a 85 (182)
T PF00574_consen 16 ERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDV----------DAGLAIYDAIRSSKAPVTTVVLGLA 85 (182)
T ss_dssp TTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCH----------HHHHHHHHHHHHSSSEEEEEEEEEE
T ss_pred CeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCcc----------HHHHHHHHHHHhcCCCeEEEEeCcc
Confidence 4455788999999998887655433 345679999999999553 3334455566677899999999999
Q ss_pred chhhhhhhccccE--EEEEcccEEEEeChhHH-----HHhhh--ccccc----------------hHHHHHHh----ccc
Q psy14493 201 GSGGALAIAVSDI--TLMLQYAIYSVISPEGC-----ASILW--KTSKR----------------ASDAAEAL----GLT 251 (318)
Q Consensus 201 ~ggga~~~~~~D~--via~~~A~i~v~gP~~~-----a~il~--~~~~~----------------~~~a~e~~----~~~ 251 (318)
.+.|++.+..++. .+|.|++.+.+-.|... ..+.- ..... .++..+.+ -++
T Consensus 86 aSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~ 165 (182)
T PF00574_consen 86 ASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTWLS 165 (182)
T ss_dssp ETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEE
T ss_pred ccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCcccc
Confidence 9999999888887 69999998888666311 11100 00000 00111111 269
Q ss_pred HHHHHHcCCcceeec
Q psy14493 252 ADKLKSIGLINKIIK 266 (318)
Q Consensus 252 a~~a~~~G~vD~ii~ 266 (318)
|.+|++.|+||+|+.
T Consensus 166 a~EA~~~GiiD~I~~ 180 (182)
T PF00574_consen 166 AEEALEYGIIDEIIE 180 (182)
T ss_dssp HHHHHHHTSSSEEES
T ss_pred HHHHHHcCCCCEecc
Confidence 999999999999986
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A .... |
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.6e-05 Score=76.77 Aligned_cols=137 Identities=10% Similarity=0.026 Sum_probs=87.3
Q ss_pred CCCCHHHHHHHHHHHHHHH--hCCCcEEEEecC------CCCCCchhHHh-------hch-HHHH-HHHHHHHhcCCCCE
Q psy14493 130 GMAKPEGYRKAVRLMHIAE--KFNLPIFTFIDT------PGAFPGIDAEE-------RGQ-SEAI-GHSIYVMSKLKVPL 192 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~--~~~lPiV~lvDs------~Ga~~~~~~e~-------~g~-~~~~-~~~~~~~s~~~vP~ 192 (318)
.+++......+..+++... ...+.+|.|.-. .|+.+.+-... ... .... ......+..+++|+
T Consensus 43 Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPv 122 (546)
T TIGR03222 43 NSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKF 122 (546)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 5788999999999988776 355778877632 23332211000 000 0001 11223445678999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcc--cEEEEe-------ChhHHHHhhhc--cccchHHHHHHh----cccHHHHHH
Q psy14493 193 ISTIIGEGGSGGALAIAVSDITLMLQY--AIYSVI-------SPEGCASILWK--TSKRASDAAEAL----GLTADKLKS 257 (318)
Q Consensus 193 IavV~G~~~ggga~~~~~~D~via~~~--A~i~v~-------gP~~~a~il~~--~~~~~~~a~e~~----~~~a~~a~~ 257 (318)
|+.|.|.|+|||...+..||++|+.++ ++|++. .|..+...... ...+...+.+++ .+++.++++
T Consensus 123 IAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~ 202 (546)
T TIGR03222 123 LAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKE 202 (546)
T ss_pred EEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHH
Confidence 999999999999999989999999986 555541 13333322222 122333344443 479999999
Q ss_pred cCCcceeec
Q psy14493 258 IGLINKIIK 266 (318)
Q Consensus 258 ~G~vD~ii~ 266 (318)
.|+||++++
T Consensus 203 ~GLV~~vv~ 211 (546)
T TIGR03222 203 WRLVDEVVK 211 (546)
T ss_pred cCCceEEeC
Confidence 999999997
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-05 Score=70.64 Aligned_cols=132 Identities=16% Similarity=0.117 Sum_probs=89.3
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHHh-C-CCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCch
Q psy14493 125 IIRNFGMAKPEGYRKAVRLMHIAEK-F-NLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGS 202 (318)
Q Consensus 125 ~~~~gG~~~~~~~~K~~r~~~~A~~-~-~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~g 202 (318)
..+..|.+++..+.-+.+-+..++. . .-||+..+||||..+.. .......+...+.|+++++.|.|++
T Consensus 25 ~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~a----------g~aI~d~i~~~~~~V~t~v~G~AaS 94 (197)
T PRK14512 25 SIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDA----------GFAIFNMIRFVKPKVFTIGVGLVAS 94 (197)
T ss_pred EEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHH----------HHHHHHHHHhCCCCEEEEEEeeeHh
Confidence 3356677788777777776655554 3 48999999999965432 2333444555678999999999999
Q ss_pred hhhhhhccccE--EEEEcccEEEEeChhHHH----Hhhhccc---cc----------------hHHHHHHh----cccHH
Q psy14493 203 GGALAIAVSDI--TLMLQYAIYSVISPEGCA----SILWKTS---KR----------------ASDAAEAL----GLTAD 253 (318)
Q Consensus 203 gga~~~~~~D~--via~~~A~i~v~gP~~~a----~il~~~~---~~----------------~~~a~e~~----~~~a~ 253 (318)
.|++.+..+|. .++.|++.+.+.-|.+.. +-+.... .+ .+...+.+ -++|.
T Consensus 95 aaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~ 174 (197)
T PRK14512 95 AAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSS 174 (197)
T ss_pred HHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHH
Confidence 99999877774 789999999888775421 1110000 00 00011111 26999
Q ss_pred HHHHcCCcceeec
Q psy14493 254 KLKSIGLINKIIK 266 (318)
Q Consensus 254 ~a~~~G~vD~ii~ 266 (318)
+|.+.|+||+|++
T Consensus 175 EA~~yGliD~I~~ 187 (197)
T PRK14512 175 SAVKYGLVFEVVE 187 (197)
T ss_pred HHHHcCCccEeec
Confidence 9999999999996
|
|
| >CHL00028 clpP ATP-dependent Clp protease proteolytic subunit | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-05 Score=71.66 Aligned_cols=135 Identities=17% Similarity=0.137 Sum_probs=93.2
Q ss_pred cchhhccCCCCCHHHHHHHHHHH-HHHHh-CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 122 NERIIRNFGMAKPEGYRKAVRLM-HIAEK-FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 122 ~~~~~~~gG~~~~~~~~K~~r~~-~~A~~-~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
++|..+.+|-+++..+..+..-+ .+..+ ..-||...++|||..+.. .......+...+.|+.+++.|-
T Consensus 29 ~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~----------g~aIyd~m~~~~~~V~Tv~~G~ 98 (200)
T CHL00028 29 RERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVIS----------GLAIYDTMQFVKPDVHTICLGL 98 (200)
T ss_pred cCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhh----------HHHHHHHHHhcCCCEEEEEEEe
Confidence 35566889999998888876544 44433 358999999999965443 2334455666678999999999
Q ss_pred Cchhhhhhhcccc--EEEEEcccEEEEeChhHH-----HHhhhccccch-------------------HHHHHHh----c
Q psy14493 200 GGSGGALAIAVSD--ITLMLQYAIYSVISPEGC-----ASILWKTSKRA-------------------SDAAEAL----G 249 (318)
Q Consensus 200 ~~ggga~~~~~~D--~via~~~A~i~v~gP~~~-----a~il~~~~~~~-------------------~~a~e~~----~ 249 (318)
|++.|++.++.+| .++|.|++++.+--|.+. ++-+....... ++..+.+ .
T Consensus 99 AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~ 178 (200)
T CHL00028 99 AASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVF 178 (200)
T ss_pred hHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcc
Confidence 9999999887777 689999999988766542 11110000000 0011111 2
Q ss_pred ccHHHHHHcCCcceeec
Q psy14493 250 LTADKLKSIGLINKIIK 266 (318)
Q Consensus 250 ~~a~~a~~~G~vD~ii~ 266 (318)
++|.+|.+.|+||+|+.
T Consensus 179 lta~EA~eyGliD~I~~ 195 (200)
T CHL00028 179 MSATEAKAYGIVDLVAV 195 (200)
T ss_pred CCHHHHHHcCCCcEEee
Confidence 79999999999999997
|
|
| >PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.8e-05 Score=70.24 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=92.9
Q ss_pred cchhhccCCCCCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 122 NERIIRNFGMAKPEGYRKAVRLMHIAEK--FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 122 ~~~~~~~gG~~~~~~~~K~~r~~~~A~~--~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
++|+.+.+|-+++..+..+...+..-+. ..-||...+||||..+..+ ......+...+.|+.+++.|-
T Consensus 24 ~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g----------~aIyd~m~~~~~~V~t~~~G~ 93 (196)
T PRK12551 24 RERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDG----------LGIFDTMQHVKPDVHTVCVGL 93 (196)
T ss_pred cCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhH----------HHHHHHHHhcCCCEEEEEEEE
Confidence 3556688999999999888877765543 2479999999999765432 233444555667999999999
Q ss_pred Cchhhhhhhcccc--EEEEEcccEEEEeChhHHHHhhhcccc----chH----------------------HHHHHh---
Q psy14493 200 GGSGGALAIAVSD--ITLMLQYAIYSVISPEGCASILWKTSK----RAS----------------------DAAEAL--- 248 (318)
Q Consensus 200 ~~ggga~~~~~~D--~via~~~A~i~v~gP~~~a~il~~~~~----~~~----------------------~a~e~~--- 248 (318)
|++.|++.++.+| ..+|.|+|++.+--|.+.+ +.... .++ +..+.+
T Consensus 94 AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd 170 (196)
T PRK12551 94 AASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGA---RGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRD 170 (196)
T ss_pred ehhHHHHHHhCCCCCceecCCCCEEEEecCCccc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcC
Confidence 9999998877666 4789999999987775321 11100 000 111111
Q ss_pred -cccHHHHHHcCCcceeec
Q psy14493 249 -GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 -~~~a~~a~~~G~vD~ii~ 266 (318)
.++|.+|.+.|+||+|++
T Consensus 171 ~~msa~EA~eyGliD~I~~ 189 (196)
T PRK12551 171 FFMSPSEAVEYGLIDLVID 189 (196)
T ss_pred cCCCHHHHHHcCCCcEEec
Confidence 379999999999999996
|
|
| >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.3e-05 Score=69.33 Aligned_cols=90 Identities=14% Similarity=0.137 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEE-ecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhh
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTF-IDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALA 207 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~l-vDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~ 207 (318)
+.+++.....+.+.++.+.+. ++-.|.| ++++|..... ...+...+..+.. ++|+|+.+.|.|.|||.+.
T Consensus 20 ~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~-------~~~l~~~l~~~~~-~KpViA~v~g~a~s~gy~l 91 (214)
T cd07022 20 ASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAG-------VFELADAIRAARA-GKPIVAFVNGLAASAAYWI 91 (214)
T ss_pred CCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHH-------HHHHHHHHHHHhc-CCCEEEEECCchhhHHHHH
Confidence 445667788888888877654 5655555 7887754321 2334555555655 7999999999999999999
Q ss_pred hccccEEEEEcccEEEEeCh
Q psy14493 208 IAVSDITLMLQYAIYSVISP 227 (318)
Q Consensus 208 ~~~~D~via~~~A~i~v~gP 227 (318)
+..||+++|.|++.++..|.
T Consensus 92 A~~aD~i~a~~~a~~g~iG~ 111 (214)
T cd07022 92 ASAADRIVVTPTAGVGSIGV 111 (214)
T ss_pred HhcCCEEEEcCCCeEEeeeE
Confidence 98999999999988766554
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. |
| >PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.2e-05 Score=70.81 Aligned_cols=132 Identities=15% Similarity=0.089 Sum_probs=93.1
Q ss_pred cchhhccCCCCCHHHHHHHHHHHHHHH--hCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 122 NERIIRNFGMAKPEGYRKAVRLMHIAE--KFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 122 ~~~~~~~gG~~~~~~~~K~~r~~~~A~--~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
++++.+.+|.++...+..+..-+-+-+ ..+-||...+||||..+..+ ......+...+.|+.+++.|-
T Consensus 53 ~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aG----------laIyd~m~~~~~~V~tv~~G~ 122 (221)
T PRK14514 53 MDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAG----------LGIYDTMQFISSDVATICTGM 122 (221)
T ss_pred hCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhH----------HHHHHHHHhcCCCEEEEEEEE
Confidence 467778999999999888876543322 23589999999999765432 223345555668999999999
Q ss_pred CchhhhhhhccccE--EEEEcccEEEEeChhHHHHhhhcccc----chHH----------------------HHHHh---
Q psy14493 200 GGSGGALAIAVSDI--TLMLQYAIYSVISPEGCASILWKTSK----RASD----------------------AAEAL--- 248 (318)
Q Consensus 200 ~~ggga~~~~~~D~--via~~~A~i~v~gP~~~a~il~~~~~----~~~~----------------------a~e~~--- 248 (318)
|++.|++.++.+|. .+|.|++++.+--|.+.+ ..... .+++ ..+.+
T Consensus 123 AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~---~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd 199 (221)
T PRK14514 123 AASMASVLLVAGTKGKRSALPHSRVMIHQPLGGA---QGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRD 199 (221)
T ss_pred ehhHHHHHHhcCCCCceeeCCCCEEEeccCCccc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcC
Confidence 99999999877875 899999999987775421 11100 0000 11111
Q ss_pred -cccHHHHHHcCCcceeec
Q psy14493 249 -GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 -~~~a~~a~~~G~vD~ii~ 266 (318)
.++|++|.+.|+||+|+.
T Consensus 200 ~wmtA~EA~eyGliD~Vi~ 218 (221)
T PRK14514 200 YWMTAQEAKEYGMIDEVLI 218 (221)
T ss_pred ccCCHHHHHHcCCccEEee
Confidence 279999999999999996
|
|
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.3e-05 Score=77.05 Aligned_cols=137 Identities=11% Similarity=0.066 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHHHHHH--hCCCcEEEEecCC-CCCC-chhHHhhc--------hH----HHHHH-HHHHHhcCCCCE
Q psy14493 130 GMAKPEGYRKAVRLMHIAE--KFNLPIFTFIDTP-GAFP-GIDAEERG--------QS----EAIGH-SIYVMSKLKVPL 192 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~--~~~lPiV~lvDs~-Ga~~-~~~~e~~g--------~~----~~~~~-~~~~~s~~~vP~ 192 (318)
.++++.....+..+++.+. ...+-+|.|.-.+ .++. |-....+. .. ..... ....+..+++|+
T Consensus 47 Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPv 126 (550)
T PRK08184 47 NSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKF 126 (550)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 4789999999999998876 3467777776432 2222 21111100 00 01111 223455678999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcc--cEEEE-----eC--hhHHHHhhhc--cccchHHHHHHh----cccHHHHHH
Q psy14493 193 ISTIIGEGGSGGALAIAVSDITLMLQY--AIYSV-----IS--PEGCASILWK--TSKRASDAAEAL----GLTADKLKS 257 (318)
Q Consensus 193 IavV~G~~~ggga~~~~~~D~via~~~--A~i~v-----~g--P~~~a~il~~--~~~~~~~a~e~~----~~~a~~a~~ 257 (318)
|+.|.|.|+|||...+..||++|+.++ ++|++ .| |..+...... .......+.+.+ .+++.++++
T Consensus 127 IAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~ 206 (550)
T PRK08184 127 IAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVD 206 (550)
T ss_pred EEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHH
Confidence 999999999999999999999999987 66654 12 4333322222 222333333433 489999999
Q ss_pred cCCcceeec
Q psy14493 258 IGLINKIIK 266 (318)
Q Consensus 258 ~G~vD~ii~ 266 (318)
.|+||++++
T Consensus 207 ~GLVd~vv~ 215 (550)
T PRK08184 207 WRLVDEVVK 215 (550)
T ss_pred cCCccEeeC
Confidence 999999996
|
|
| >TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.5e-05 Score=68.08 Aligned_cols=131 Identities=21% Similarity=0.228 Sum_probs=86.5
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHHH--hCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIAE--KFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A~--~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
++..+.+|.++...+..+..-+...+ ...-||+..+||||..+..+ ......+...+.|+.+++.|.|
T Consensus 26 ~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g----------~~I~d~l~~~~~~v~t~~~G~A 95 (191)
T TIGR00493 26 ERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAG----------LAIYDTMQFIKPDVSTICIGQA 95 (191)
T ss_pred CeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHH----------HHHHHHHHhcCCCEEEEEEEee
Confidence 34446778888877777665554443 23579999999999765432 2223344445568889999999
Q ss_pred chhhhhhhccc--cEEEEEcccEEEEeChhHHHHhhhccccc--------------------------hHHHHHHh----
Q psy14493 201 GSGGALAIAVS--DITLMLQYAIYSVISPEGCASILWKTSKR--------------------------ASDAAEAL---- 248 (318)
Q Consensus 201 ~ggga~~~~~~--D~via~~~A~i~v~gP~~~a~il~~~~~~--------------------------~~~a~e~~---- 248 (318)
++.|++.+..+ +.++|.|+|.+.+-.|.+.. +..... .++..+.+
T Consensus 96 aSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~---~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~ 172 (191)
T TIGR00493 96 ASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDF 172 (191)
T ss_pred ccHHHHHHhcCCCCcEEecCCceEEEecCcccc---cCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCc
Confidence 99888876544 46899999999998775321 111000 00011111
Q ss_pred cccHHHHHHcCCcceeec
Q psy14493 249 GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 ~~~a~~a~~~G~vD~ii~ 266 (318)
.+++.+|.+.|+||+|+.
T Consensus 173 ~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 173 FMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred cCcHHHHHHcCCccEEec
Confidence 269999999999999985
|
This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model. |
| >cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.6e-05 Score=68.94 Aligned_cols=96 Identities=26% Similarity=0.284 Sum_probs=73.4
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIAEKF--NLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A~~~--~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
++..+..|-+++..+..+...+..+... .-||+..+||||..+..+. .+... +...+.|+.+++.|.|
T Consensus 9 ~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~-------~i~~~---l~~~~~~v~t~~~g~a 78 (171)
T cd07017 9 ERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGL-------AIYDT---MQYIKPPVSTICLGLA 78 (171)
T ss_pred CcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHH-------HHHHH---HHhcCCCEEEEEEeEe
Confidence 3445677888888888888887776654 3699999999998654322 23333 3344689999999999
Q ss_pred chhhhhhhcccc--EEEEEcccEEEEeChh
Q psy14493 201 GSGGALAIAVSD--ITLMLQYAIYSVISPE 228 (318)
Q Consensus 201 ~ggga~~~~~~D--~via~~~A~i~v~gP~ 228 (318)
++.|++.++.+| .++|.|+|.+.+-.|.
T Consensus 79 aS~~~~i~~~g~~~~r~~~~~a~~~~h~~~ 108 (171)
T cd07017 79 ASMGALLLAAGTKGKRYALPNSRIMIHQPL 108 (171)
T ss_pred hhHHHHHHHcCCCCCEEEccchHHHHcCCC
Confidence 999999988899 7999999988776664
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ |
| >TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.8e-05 Score=68.60 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhC-C-CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccE
Q psy14493 136 GYRKAVRLMHIAEKF-N-LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDI 213 (318)
Q Consensus 136 ~~~K~~r~~~~A~~~-~-lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~ 213 (318)
+++.+.+.++.+.+. + ..||.-+||+|..+... ..+...+..+. .++|+++.+.|.|.|+|.+.+..||.
T Consensus 14 s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~-------~~l~~~i~~~~-~~kpvia~v~g~a~s~g~~la~aaD~ 85 (207)
T TIGR00706 14 SPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVAS-------EEIYEKLKKLK-AKKPVVASMGGVAASGGYYIAMAADE 85 (207)
T ss_pred CHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHH-------HHHHHHHHHhc-CCCCEEEEECCccchHHHHHHhcCCE
Confidence 456677777766543 3 46788889988765422 33344444444 35999999999999999999888999
Q ss_pred EEEEcccEEEEeCh
Q psy14493 214 TLMLQYAIYSVISP 227 (318)
Q Consensus 214 via~~~A~i~v~gP 227 (318)
++|.|++.++..|+
T Consensus 86 i~a~p~a~vg~iGv 99 (207)
T TIGR00706 86 IVANPGTITGSIGV 99 (207)
T ss_pred EEECCCCeEEeeeE
Confidence 99999987776555
|
The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. |
| >PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=9e-05 Score=65.94 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=91.7
Q ss_pred cchhhccCCCCCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 122 NERIIRNFGMAKPEGYRKAVRLMHIAEK--FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 122 ~~~~~~~gG~~~~~~~~K~~r~~~~A~~--~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
+++..+.+|.+.++.+.-++.-+-.-+. ..-||...++|||..+..+ ......+...+-|+.+++.|-
T Consensus 26 ~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~G----------laIyd~m~~~~~~V~Ti~~G~ 95 (201)
T PRK14513 26 KDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAG----------LAIYDTMRYIKAPVSTICVGI 95 (201)
T ss_pred hCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhH----------HHHHHHHHhcCCCEEEEEEee
Confidence 3556688899999988888655544333 2479999999999654432 333444555667999999999
Q ss_pred CchhhhhhhccccE--EEEEcccEEEEeChhHHH----Hhhhccc-------------------cchHHHHHHh----cc
Q psy14493 200 GGSGGALAIAVSDI--TLMLQYAIYSVISPEGCA----SILWKTS-------------------KRASDAAEAL----GL 250 (318)
Q Consensus 200 ~~ggga~~~~~~D~--via~~~A~i~v~gP~~~a----~il~~~~-------------------~~~~~a~e~~----~~ 250 (318)
|++.|++.+..+|. ++|.|+|++.+=-|.+.. +-+.... ...++..+.+ .+
T Consensus 96 AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~m 175 (201)
T PRK14513 96 AMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFM 175 (201)
T ss_pred ehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCccc
Confidence 99999988777775 899999999887775321 0000000 0001111111 27
Q ss_pred cHHHHHHcCCcceeec
Q psy14493 251 TADKLKSIGLINKIIK 266 (318)
Q Consensus 251 ~a~~a~~~G~vD~ii~ 266 (318)
+|.+|.+.|+||+|++
T Consensus 176 sa~EA~eyGliD~I~~ 191 (201)
T PRK14513 176 SPEEAKAYGLIDSVIE 191 (201)
T ss_pred CHHHHHHcCCCcEEec
Confidence 9999999999999997
|
|
| >COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.9e-05 Score=72.31 Aligned_cols=138 Identities=22% Similarity=0.286 Sum_probs=100.2
Q ss_pred cCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCCchhHHhhchHHHHHHHHHH
Q psy14493 106 NGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFN-LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYV 184 (318)
Q Consensus 106 ~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~-lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~ 184 (318)
.+.+|.|+--| |.+++..+.-+.|.++.|.+.+ -.+|...||||-... ..-+.+.+
T Consensus 24 ~~~~v~vi~i~-------------g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGGl~~----------sm~~iv~~ 80 (436)
T COG1030 24 AEKKVYVIEID-------------GAIDPASADYLQRALQSAEEENAAAVVLELDTPGGLLD----------SMRQIVRA 80 (436)
T ss_pred cCCeEEEEEec-------------CccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCchHH----------HHHHHHHH
Confidence 55677777766 6789999999999999999998 899999999997643 23445667
Q ss_pred HhcCCCCEEEEEcCC---CchhhhhhhccccEEEEEcccEEEEeChhHHH--Hhhhcc---------------ccchHHH
Q psy14493 185 MSKLKVPLISTIIGE---GGSGGALAIAVSDITLMLQYAIYSVISPEGCA--SILWKT---------------SKRASDA 244 (318)
Q Consensus 185 ~s~~~vP~IavV~G~---~~ggga~~~~~~D~via~~~A~i~v~gP~~~a--~il~~~---------------~~~~~~a 244 (318)
+...++|++..|.=+ |.+.|+|..-.||+..|.|++.++..-|-... +.-... ..+-.+.
T Consensus 81 i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ 160 (436)
T COG1030 81 ILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPTW 160 (436)
T ss_pred HHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCChHH
Confidence 888899988888855 78889999888999999999888876552111 000000 0000111
Q ss_pred HHHh-----cccHHHHHHcCCcceeec
Q psy14493 245 AEAL-----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 245 ~e~~-----~~~a~~a~~~G~vD~ii~ 266 (318)
++.+ ..++.++.+.|+||-+-.
T Consensus 161 ae~~v~~~~~l~a~eA~~~~vid~iA~ 187 (436)
T COG1030 161 AERFVTENLSLTAEEALRQGVIDLIAR 187 (436)
T ss_pred HHHHhhhccCCChhHHHhcCccccccC
Confidence 2221 369999999999998875
|
|
| >COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.5e-06 Score=77.51 Aligned_cols=51 Identities=35% Similarity=0.404 Sum_probs=44.2
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCCChHHhhhhhc
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCKN 317 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~~~~w~~~~~~ 317 (318)
+.|+ +|+|||.||.+||+.+..+... ..+.++|+|||++..++.|..+|+.
T Consensus 22 ~~il---VavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~~~~~~~~~~~~ 72 (298)
T COG0037 22 YKIL---VAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRGYSDQEAELVEK 72 (298)
T ss_pred CeEE---EEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCCccchHHHHHHH
Confidence 5555 7999999999999998887655 6788999999999888999998864
|
|
| >COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.1e-05 Score=68.79 Aligned_cols=137 Identities=19% Similarity=0.268 Sum_probs=95.9
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCcEEEEecC---CCCCCchhHH-hhch---H--------HHHHHHHHHHhcCCCCEE
Q psy14493 130 GMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDT---PGAFPGIDAE-ERGQ---S--------EAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs---~Ga~~~~~~e-~~g~---~--------~~~~~~~~~~s~~~vP~I 193 (318)
.+..|.....+.++...|.. .++-+|.|.-. .-++.+-+.. .+|. + -.+......+...+.|+|
T Consensus 41 NAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlIR~~PKpVi 120 (282)
T COG0447 41 NAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVI 120 (282)
T ss_pred ccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHHHhCCcceE
Confidence 45678788888888887754 56888888732 1122211111 1111 1 144555666777899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHH-------HHhhhccccchHHHHHHh----cccHHHHHHcCCcc
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGC-------ASILWKTSKRASDAAEAL----GLTADKLKSIGLIN 262 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~-------a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD 262 (318)
++|.|-++|||-.....||+.|+.++|.++-+||..+ ++.+.+. .+.+.+.|.. ..++++++++|+|+
T Consensus 121 A~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~-VGqKkArEIwfLcR~Y~A~eal~MGlVN 199 (282)
T COG0447 121 AMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARI-VGQKKAREIWFLCRQYDAEEALDMGLVN 199 (282)
T ss_pred EEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHH-hhhhhhHHhhhhhhhccHHHHHhcCcee
Confidence 9999999999988888899999999999999999753 3444432 3333444432 37999999999999
Q ss_pred eeecC
Q psy14493 263 KIIKE 267 (318)
Q Consensus 263 ~ii~~ 267 (318)
.|++.
T Consensus 200 ~Vvp~ 204 (282)
T COG0447 200 TVVPH 204 (282)
T ss_pred eeccH
Confidence 99973
|
|
| >COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.9e-05 Score=70.24 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc
Q psy14493 131 MAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV 210 (318)
Q Consensus 131 ~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~ 210 (318)
.++.....+..+.+... ..--+||..+||||..+.. ...+++.+..+...+ |+++.|-+-|++||.|.++.
T Consensus 79 ~~~~~~~~~~l~~~~~~-~~vk~vvL~inSPGG~v~a-------s~~i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~a 149 (317)
T COG0616 79 FIGGDDIEEILRAARAD-PSVKAVVLRINSPGGSVVA-------SELIARALKRLRAKK-PVVVSVGGYAASGGYYIALA 149 (317)
T ss_pred cccHHHHHHHHHHHhcC-CCCceEEEEEECcCCchhH-------HHHHHHHHHHHhhcC-CEEEEECCeecchhhhhhcc
Confidence 33455555555544432 2336899999999976542 356788888888886 99999999999999999999
Q ss_pred ccEEEEEcccEEEEeCh
Q psy14493 211 SDITLMLQYAIYSVISP 227 (318)
Q Consensus 211 ~D~via~~~A~i~v~gP 227 (318)
+|.++|.|++.++-+|+
T Consensus 150 Ad~I~a~p~si~GSIGV 166 (317)
T COG0616 150 ADKIVADPSSITGSIGV 166 (317)
T ss_pred CCEEEecCCceeeecee
Confidence 99999999988887776
|
|
| >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00014 Score=65.74 Aligned_cols=90 Identities=12% Similarity=0.064 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCc-EEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhh
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLP-IFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALA 207 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lP-iV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~ 207 (318)
+..+..+...+.+.++.|.+. ++- ||.-+|++|+.... . ..+...+..+...++|+|+.+-+ +.+||.|.
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~-~------~el~~~i~~~~~~~kpVia~~~~-~~sggy~l 95 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAK-L------EELRQALERFRASGKPVIAYADG-YSQGQYYL 95 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHH-H------HHHHHHHHHHHHhCCeEEEEeCC-CCchhhhh
Confidence 444567788888888887665 444 55556888883322 2 23455566666567999999887 77888888
Q ss_pred hccccEEEEEcccEEEEeCh
Q psy14493 208 IAVSDITLMLQYAIYSVISP 227 (318)
Q Consensus 208 ~~~~D~via~~~A~i~v~gP 227 (318)
+..||.++|.|.+.++..|.
T Consensus 96 asaad~I~a~p~~~vg~iGv 115 (222)
T cd07018 96 ASAADEIYLNPSGSVELTGL 115 (222)
T ss_pred hhhCCEEEECCCceEEeecc
Confidence 88899999999999988775
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys |
| >COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00017 Score=63.79 Aligned_cols=132 Identities=21% Similarity=0.234 Sum_probs=85.9
Q ss_pred ccCCCCCHHHHHHHHHHH-HH-HHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhh
Q psy14493 127 RNFGMAKPEGYRKAVRLM-HI-AEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGG 204 (318)
Q Consensus 127 ~~gG~~~~~~~~K~~r~~-~~-A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggg 204 (318)
+.+|-++...+..+...+ .+ ++...-||...++|||..+..+ +.....+...+.|+.++++|-+.+.|
T Consensus 31 ~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG----------~AIydtm~~ik~~V~ti~~G~AaSmg 100 (200)
T COG0740 31 FLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG----------LAIYDTMQFIKPPVSTICMGQAASMG 100 (200)
T ss_pred EEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchh----------HHHHHHHHhcCCCeEEEEecHHHhHH
Confidence 455666666455554444 33 2334689999999999766543 22334455567899999999999999
Q ss_pred hhhhccccEE--EEEcccEEEEeChhHHHHhhhccc-cchHH----------------------HHHH----hcccHHHH
Q psy14493 205 ALAIAVSDIT--LMLQYAIYSVISPEGCASILWKTS-KRASD----------------------AAEA----LGLTADKL 255 (318)
Q Consensus 205 a~~~~~~D~v--ia~~~A~i~v~gP~~~a~il~~~~-~~~~~----------------------a~e~----~~~~a~~a 255 (318)
+..+..++.- ++.|+|+|.+=-|.+++.=...+. ..+.+ ..+. ..+++.++
T Consensus 101 s~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA 180 (200)
T COG0740 101 SVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEA 180 (200)
T ss_pred HHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHH
Confidence 9987767765 999999999877764221000000 00111 0111 13799999
Q ss_pred HHcCCcceeecCc
Q psy14493 256 KSIGLINKIIKEP 268 (318)
Q Consensus 256 ~~~G~vD~ii~~p 268 (318)
.+.|+||.|+...
T Consensus 181 ~~yGLiD~V~~~~ 193 (200)
T COG0740 181 KEYGLIDKVIESR 193 (200)
T ss_pred HHcCCcceecccc
Confidence 9999999999743
|
|
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.6e-05 Score=66.50 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHhC-CCcE-EEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcccc
Q psy14493 135 EGYRKAVRLMHIAEKF-NLPI-FTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSD 212 (318)
Q Consensus 135 ~~~~K~~r~~~~A~~~-~lPi-V~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D 212 (318)
.++.-+.+.++.+.+. ++-. |.-++|+|..+.... .+...+..+...++|+|+.+.|.|.|+|.+.+..||
T Consensus 21 ~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~-------~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD 93 (211)
T cd07019 21 VGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASE-------VIRAELAAARAAGKPVVVSAGGAAASGGYWISTPAN 93 (211)
T ss_pred cCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHH-------HHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCC
Confidence 3567777778777655 5554 444899998765432 223445566667899999999999999999988999
Q ss_pred EEEEEcccEEEEeC
Q psy14493 213 ITLMLQYAIYSVIS 226 (318)
Q Consensus 213 ~via~~~A~i~v~g 226 (318)
+++|.|++.++..|
T Consensus 94 ~i~a~~~a~~gsiG 107 (211)
T cd07019 94 YIVANPSTLTGSIG 107 (211)
T ss_pred EEEEcCCCEEEEeE
Confidence 99999998887766
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >PRK12552 ATP-dependent Clp protease-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00024 Score=64.06 Aligned_cols=143 Identities=18% Similarity=0.183 Sum_probs=87.4
Q ss_pred chhhccCCCCCHH----------HHHHHH-HHHHHHHh-CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCC
Q psy14493 123 ERIIRNFGMAKPE----------GYRKAV-RLMHIAEK-FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKV 190 (318)
Q Consensus 123 ~~~~~~gG~~~~~----------~~~K~~-r~~~~A~~-~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~v 190 (318)
+|+.+.||-+.+. .+..+. .++-+..+ ..-||-.+++|||...-.+ +..|...........+...+-
T Consensus 30 ~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G-~~iG~v~~glaIyD~m~~ik~ 108 (222)
T PRK12552 30 ERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTG-DAIGFETEAFAICDTMRYIKP 108 (222)
T ss_pred CCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccc-ccccccccHHHHHHHHHhcCC
Confidence 3444566666555 555554 33344333 3589999999999654222 111222233334444555567
Q ss_pred CEEEEEcCCCchhhhhhhccccE--EEEEcccEEEEeChhHHH----Hhhhcccc---c----------------hHHHH
Q psy14493 191 PLISTIIGEGGSGGALAIAVSDI--TLMLQYAIYSVISPEGCA----SILWKTSK---R----------------ASDAA 245 (318)
Q Consensus 191 P~IavV~G~~~ggga~~~~~~D~--via~~~A~i~v~gP~~~a----~il~~~~~---~----------------~~~a~ 245 (318)
|+.++++|-|++.+++.++.+|. .+|.|+|++.+=-|.+.+ +=+..... + .++..
T Consensus 109 ~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~ 188 (222)
T PRK12552 109 PVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLS 188 (222)
T ss_pred CeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 89999999999999998877775 789999999886665321 10000000 0 00111
Q ss_pred HHh----cccHHHHHHcCCcceeec
Q psy14493 246 EAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 246 e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+.+ .++|.+|.+.|+||+|+.
T Consensus 189 ~d~~rd~wmsA~EA~eyGliD~Ii~ 213 (222)
T PRK12552 189 KDTDRMFYLTPQEAKEYGLIDRVLE 213 (222)
T ss_pred HHhcCCCcCCHHHHHHcCCCcEEec
Confidence 111 279999999999999997
|
|
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00026 Score=72.73 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhCC--CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccE
Q psy14493 136 GYRKAVRLMHIAEKFN--LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDI 213 (318)
Q Consensus 136 ~~~K~~r~~~~A~~~~--lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~ 213 (318)
+...+.+.++.|.+.. -.||.-+||||...... ..+.+.+..+...++|+|+.+-|-|++||.|.+..||.
T Consensus 330 ~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as-------e~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~ 402 (584)
T TIGR00705 330 GGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS-------EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADY 402 (584)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH-------HHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCE
Confidence 4456666676665543 47899999999644321 23344555566667999999999999999999999999
Q ss_pred EEEEcccEEE
Q psy14493 214 TLMLQYAIYS 223 (318)
Q Consensus 214 via~~~A~i~ 223 (318)
++|.|++.++
T Consensus 403 I~a~p~t~~G 412 (584)
T TIGR00705 403 IVASPNTITG 412 (584)
T ss_pred EEECCCCeee
Confidence 9999997653
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >PRK11778 putative inner membrane peptidase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00061 Score=64.96 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=58.1
Q ss_pred HHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc
Q psy14493 140 AVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY 219 (318)
Q Consensus 140 ~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~ 219 (318)
+..+++.|... --||.-+||||..+... +.++..+..+...++|+++.+-+-|++||.|+++.||.++|.|.
T Consensus 113 i~a~l~~A~~~-~aVvLridSpGG~v~~s-------~~a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~ 184 (330)
T PRK11778 113 ITAILAVAKPG-DEVLLRLESPGGVVHGY-------GLAASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPF 184 (330)
T ss_pred HHHHHHhccCC-CeEEEEEeCCCCchhHH-------HHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCC
Confidence 33344445433 35999999999876432 22233355566677999999999999999999989999999999
Q ss_pred cEEEEeCh
Q psy14493 220 AIYSVISP 227 (318)
Q Consensus 220 A~i~v~gP 227 (318)
+.++.+|.
T Consensus 185 a~vGSIGV 192 (330)
T PRK11778 185 AIVGSIGV 192 (330)
T ss_pred CeEEeeee
Confidence 87777654
|
|
| >KOG0840|consensus | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00025 Score=64.42 Aligned_cols=138 Identities=22% Similarity=0.253 Sum_probs=95.3
Q ss_pred cchhhccCCCCCHHHHHHHH-HHHHH-HHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 122 NERIIRNFGMAKPEGYRKAV-RLMHI-AEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 122 ~~~~~~~gG~~~~~~~~K~~-r~~~~-A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
++++.+.|+.+.+..+.-+. .++-+ ++....||..+++|||.-...+ ......|.-+.-|+-++.+|-
T Consensus 91 reRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtag----------lAIYDtMq~ik~~V~Tic~G~ 160 (275)
T KOG0840|consen 91 RERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAG----------LAIYDTMQYIKPDVSTICVGL 160 (275)
T ss_pred HhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchh----------hhHHHHHHhhCCCceeeehhh
Confidence 46788999999998777664 44444 4566799999999999877432 222344555667999999999
Q ss_pred Cchhhhhhhcc--ccEEEEEcccEEEEeChhHHHHhhhccc-cchHHHH----------------------HHh----cc
Q psy14493 200 GGSGGALAIAV--SDITLMLQYAIYSVISPEGCASILWKTS-KRASDAA----------------------EAL----GL 250 (318)
Q Consensus 200 ~~ggga~~~~~--~D~via~~~A~i~v~gP~~~a~il~~~~-~~~~~a~----------------------e~~----~~ 250 (318)
+++-|++..+. --..++.|++++.+=-|.+++.=-..+. ..++|+. +.+ .+
T Consensus 161 Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fm 240 (275)
T KOG0840|consen 161 AASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFM 240 (275)
T ss_pred HHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccC
Confidence 99999998754 3478899999999877765432111110 1111110 111 37
Q ss_pred cHHHHHHcCCcceeecCcc
Q psy14493 251 TADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 251 ~a~~a~~~G~vD~ii~~p~ 269 (318)
+|.+|.+.|+||.|++.|.
T Consensus 241 sa~EA~eyGliD~v~~~p~ 259 (275)
T KOG0840|consen 241 SAEEAKEYGLIDKVIDHPP 259 (275)
T ss_pred CHHHHHHhcchhhhhcCCc
Confidence 9999999999999998653
|
|
| >PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00074 Score=62.28 Aligned_cols=88 Identities=22% Similarity=0.239 Sum_probs=70.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhc
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIA 209 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~ 209 (318)
..++......+.|.++.+.+.+ ||..+++|||..+.. ...+++. +.....|+.++|-..|.++|++.+.
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~-~IdLii~TpGG~v~A-------A~~I~~~---l~~~~~~v~v~VP~~A~SAGTlIAL 138 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDK-PIDLIIHTPGGLVDA-------AEQIARA---LREHPAKVTVIVPHYAMSAGTLIAL 138 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCC-ceEEEEECCCCcHHH-------HHHHHHH---HHhCCCCEEEEECcccccHHHHHHH
Confidence 5567788889999999886654 999999999976532 1234443 4445689999999999999999998
Q ss_pred cccEEEEEcccEEEEeChh
Q psy14493 210 VSDITLMLQYAIYSVISPE 228 (318)
Q Consensus 210 ~~D~via~~~A~i~v~gP~ 228 (318)
.||-++|.|+|.++...|.
T Consensus 139 aADeIvM~p~a~LGpiDPq 157 (285)
T PF01972_consen 139 AADEIVMGPGAVLGPIDPQ 157 (285)
T ss_pred hCCeEEECCCCccCCCCcc
Confidence 9999999999998887773
|
The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane |
| >KOG1682|consensus | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00079 Score=59.41 Aligned_cols=148 Identities=18% Similarity=0.214 Sum_probs=91.7
Q ss_pred cCEEEEEEeecCCCCccchhhccCCCCCHHHHHH-HHHHHHHHHhCCCcEEEEecCC-----CCCCchhHHhhc------
Q psy14493 106 NGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRK-AVRLMHIAEKFNLPIFTFIDTP-----GAFPGIDAEERG------ 173 (318)
Q Consensus 106 ~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K-~~r~~~~A~~~~lPiV~lvDs~-----Ga~~~~~~e~~g------ 173 (318)
||..=.++.|++++ .+++-..... ...+....+...+-.|.+..-+ |-.+-+-.+..|
T Consensus 40 ~gvR~i~l~npKk~----------NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~hae 109 (287)
T KOG1682|consen 40 NGVREITLNNPKKL----------NTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAE 109 (287)
T ss_pred cceeeeeecCcccc----------chhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHH
Confidence 55565667777764 2333322222 2233344455567777776533 333322222222
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChh--------HHHHhhhccccchHHHH
Q psy14493 174 QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPE--------GCASILWKTSKRASDAA 245 (318)
Q Consensus 174 ~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~--------~~a~il~~~~~~~~~a~ 245 (318)
.+......+..+...+||+|+-|.|-+++.|....++||.+++++++.|++-|-. |.+ +.+ ......++
T Consensus 110 vFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvA--laR-avpRkva~ 186 (287)
T KOG1682|consen 110 VFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVA--LAR-AVPRKVAA 186 (287)
T ss_pred HHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchh--Hhh-hcchhHHH
Confidence 2345566777788899999999999999999999999999999988877653322 111 111 11112333
Q ss_pred HHh----cccHHHHHHcCCcceeec
Q psy14493 246 EAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 246 e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+++ +++.++++..|++..+++
T Consensus 187 ~ML~Tg~Pi~~eeAl~sGlvskvVp 211 (287)
T KOG1682|consen 187 YMLMTGLPITGEEALISGLVSKVVP 211 (287)
T ss_pred HHHHhCCCCchHHHHHhhhhhhcCC
Confidence 443 589999999999999996
|
|
| >KOG0368|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00023 Score=77.31 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=104.1
Q ss_pred CCcEEEEEEEE------cCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchh
Q psy14493 95 DLSIIGVLARI------NGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGID 168 (318)
Q Consensus 95 ~~~vVtG~g~i------~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~ 168 (318)
+.|+|.=.-++ .||.+.||+||-| +.-|+.||..-.-..++-++|.+.+||-|++.-..|+++|..
T Consensus 1527 ~~GMVAw~~~~~TpEyP~Gr~~iVIgNDiT--------fqiGSFGp~ED~lF~~aselAR~~~iPrIylaaNSGARIGlA 1598 (2196)
T KOG0368|consen 1527 SCGMVAWKLTVKTPEYPEGRDLIVIGNDVT--------FQIGSFGPREDLLFLAASELAREKGIPRIYLAANSGARIGLA 1598 (2196)
T ss_pred cceeEEEEEEecCCCCCCCceEEEEeccce--------EeccCCCChHHHHHHHHHHHHHhcCCCeEEEeccCccccccH
Confidence 35676555555 7999999999998 699999999999999999999999999999999999999865
Q ss_pred HHhhch------------------------H-----------------------------------------HHHHHHHH
Q psy14493 169 AEERGQ------------------------S-----------------------------------------EAIGHSIY 183 (318)
Q Consensus 169 ~e~~g~------------------------~-----------------------------------------~~~~~~~~ 183 (318)
.|.... + +.|+-...
T Consensus 1599 eei~~lfkVaw~d~~~P~kgF~YlYlt~ed~~ri~~~~v~~e~~~~~GE~R~~I~~IiGkeeglGVEnL~GSGlIAGetS 1678 (2196)
T KOG0368|consen 1599 EEIKPLFKVAWVDEDDPEKGFQYLYLTPEDYERIGSSVVHCEVVEESGEERLKIKAIIGKEEGIGVENLRGSGLIAGETS 1678 (2196)
T ss_pred HHHHHHheeeccCCCCcCCCceEEEECHHHHHHhhcccceeEEEeecCcceEEEEEEecccccccceeccccccccchhh
Confidence 543210 0 11111111
Q ss_pred HHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhc
Q psy14493 184 VMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWK 236 (318)
Q Consensus 184 ~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~ 236 (318)
..- ..+|+|+.|.|.+.|-|||..-++..+|..+++.+-++|.+.--.+|.+
T Consensus 1679 rAY-~ei~T~t~VT~RsVGIGAYlvRLgqR~IQve~~~iILTGa~ALNklLGr 1730 (2196)
T KOG0368|consen 1679 RAY-NEIFTITLVTGRSVGIGAYLARLGQRIIQVEDQHIILTGASALNKLLGR 1730 (2196)
T ss_pred hhh-hccceEEEEecceeeHHHHHHHHHHHHHHhcCCceEEeCHHHHHHHhcc
Confidence 111 2489999999999999999999999999999999999998765555543
|
|
| >cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00012 Score=57.88 Aligned_cols=45 Identities=33% Similarity=0.421 Sum_probs=38.3
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCCChHHhhhhhc
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCKN 317 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~~~~w~~~~~~ 317 (318)
+++|||.||.++++.+.++. .++.++|+||+++++++.|..+|+.
T Consensus 3 v~~SGG~DS~~ll~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (103)
T cd01986 3 VAFSGGKDSSVAAALLKKLG----YQVIAVTVDHGISPRLEDAKEIAKE 47 (103)
T ss_pred EEEeCcHHHHHHHHHHHHhC----CCEEEEEEcCCCcccHHHHHHHHHH
Confidence 58999999999999887652 2678999999999989999998863
|
The domain forms a apha/beta/apha fold which binds to Adenosine group.. |
| >PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00028 Score=65.15 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=38.4
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccC--ccccccCCCCCCCCCChH-Hhhhhh
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYK--IQFYVFHINHGLSPSSDK-WLIHCK 316 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~--~~~~~~~~~h~~~~~~~~-w~~~~~ 316 (318)
|.|+ +|+|||.||++||+.+..+....+ .++.++|++||++..+.. =.++|+
T Consensus 30 ~kil---Va~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~~~~ 84 (258)
T PRK10696 30 DRVM---VCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPEYLE 84 (258)
T ss_pred CEEE---EEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHHHHH
Confidence 4455 799999999999999988765533 578899999999753322 245554
|
|
| >KOG1681|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00044 Score=61.98 Aligned_cols=108 Identities=20% Similarity=0.240 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChh--HHHH--hhhc--cccch----HHHH
Q psy14493 176 EAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPE--GCAS--ILWK--TSKRA----SDAA 245 (318)
Q Consensus 176 ~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~--~~a~--il~~--~~~~~----~~a~ 245 (318)
+..-..+..+-.++.|+|+.|.|.|.|+|.-....||+.+++++|.+++=.-. -++. .+.+ +..+- .|.+
T Consensus 113 k~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~~~ela 192 (292)
T KOG1681|consen 113 KRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELA 192 (292)
T ss_pred HHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHH
Confidence 34455566677889999999999999999988888999999999998882211 1111 1211 11111 1111
Q ss_pred -HHhcccHHHHHHcCCcceeecCccccCCCCchHHHHHHHHHHhhccC
Q psy14493 246 -EALGLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLDISFTLFCNYK 292 (318)
Q Consensus 246 -e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~ 292 (318)
-+.++++.++++.|+|..|.+ |-..|+...+.+.....
T Consensus 193 fTar~f~a~EAl~~GLvSrvf~---------dk~~ll~~~l~mA~~Ia 231 (292)
T KOG1681|consen 193 FTARKFSADEALDSGLVSRVFP---------DKEELLNGALPMAELIA 231 (292)
T ss_pred hhhhhcchhhhhhcCcchhhcC---------CHHHHHhhhHHHHHHhc
Confidence 123589999999999999996 67778887777665543
|
|
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.069 Score=55.38 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhC-C-CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEE
Q psy14493 137 YRKAVRLMHIAEKF-N-LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDIT 214 (318)
Q Consensus 137 ~~K~~r~~~~A~~~-~-lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~v 214 (318)
...+.+.++.|.+. + --||.-+||||..... ...+.+.+..+...++|+++.+-+-|++||.|+++.||.+
T Consensus 349 ~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~a-------se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I 421 (618)
T PRK10949 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTA-------SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYI 421 (618)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHH-------HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEE
Confidence 34555566555433 3 4689999999964432 2344555666666679999988888999999999899999
Q ss_pred EEEcccEEE
Q psy14493 215 LMLQYAIYS 223 (318)
Q Consensus 215 ia~~~A~i~ 223 (318)
+|.|.+..+
T Consensus 422 ~a~p~t~tG 430 (618)
T PRK10949 422 VASPSTLTG 430 (618)
T ss_pred EECCCCcee
Confidence 999975433
|
|
| >PF01343 Peptidase_S49: Peptidase family S49 peptidase classification | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.023 Score=48.22 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=29.9
Q ss_pred cCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeCh
Q psy14493 187 KLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISP 227 (318)
Q Consensus 187 ~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP 227 (318)
..++|+++.+-+.|.+++.|+++.||-++|.|.+.++.+|.
T Consensus 4 ~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv 44 (154)
T PF01343_consen 4 ASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGV 44 (154)
T ss_dssp HTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---E
T ss_pred ccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeCh
Confidence 34699999999999888888888899999999988887665
|
; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A. |
| >KOG1679|consensus | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.035 Score=49.63 Aligned_cols=137 Identities=17% Similarity=0.190 Sum_probs=83.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEe-cCCCCCC-----ch-----hHHhhchHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFI-DTPGAFP-----GI-----DAEERGQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lv-Ds~Ga~~-----~~-----~~e~~g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
-.+++....+....+++--.. .+.-+|.|- -+||.+. -+ .+|.......+-..+..+..+++|+|+.|
T Consensus 52 kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAi 131 (291)
T KOG1679|consen 52 KNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAI 131 (291)
T ss_pred hccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehh
Confidence 356666666666666654433 445555543 3555554 21 11111112233444556667899999999
Q ss_pred cCCCchhhhhhhccccEEEEEcccEEEEeC------hh-HHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQYAIYSVIS------PE-GCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~A~i~v~g------P~-~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
-|-+.|||--.+..||+.++..++.|++.. |. ++..-+ ++..+..-+.|.. .++..+++..|+|+.++
T Consensus 132 dG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRL-pR~vg~alaKELIftarvl~g~eA~~lGlVnhvv 210 (291)
T KOG1679|consen 132 DGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRL-PRIVGVALAKELIFTARVLNGAEAAKLGLVNHVV 210 (291)
T ss_pred cchhcccchhhhhhccceehhhhccccccccceeeecCCCccchh-HHHHhHHHHHhHhhhheeccchhHHhcchHHHHH
Confidence 999999998887779999999988887732 22 222222 2222222333332 46889999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
.
T Consensus 211 ~ 211 (291)
T KOG1679|consen 211 E 211 (291)
T ss_pred h
Confidence 6
|
|
| >TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.014 Score=55.38 Aligned_cols=46 Identities=30% Similarity=0.380 Sum_probs=34.8
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCCChHHhhh
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIH 314 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~~~~w~~~ 314 (318)
+.++ +|+|||.||.++++.+.+.. +.++.++|++||+++. .+++++
T Consensus 17 ~kVv---ValSGGVDSsvla~ll~~~~---G~~v~av~vd~G~~~~-~E~e~~ 62 (311)
T TIGR00884 17 AKVI---IALSGGVDSSVAAVLAHRAI---GDRLTCVFVDHGLLRK-GEAEQV 62 (311)
T ss_pred CcEE---EEecCChHHHHHHHHHHHHh---CCCEEEEEEeCCCCCh-HHHHHH
Confidence 5565 69999999999998876643 3468899999999863 344443
|
This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit |
| >PRK00074 guaA GMP synthase; Reviewed | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.037 Score=56.14 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=35.4
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCCChHHhhhh
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHC 315 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~~~~w~~~~ 315 (318)
+.++ +|+|||.||.++++.+.+.+ +.++.++|++||+.+. .+|++++
T Consensus 216 ~~vl---va~SGGvDS~vll~ll~~~l---g~~v~av~vd~g~~~~-~e~~~~~ 262 (511)
T PRK00074 216 KKVI---LGLSGGVDSSVAAVLLHKAI---GDQLTCVFVDHGLLRK-NEAEQVM 262 (511)
T ss_pred CcEE---EEeCCCccHHHHHHHHHHHh---CCceEEEEEeCCCCCH-HHHHHHH
Confidence 4455 69999999999999887654 3468899999999653 4455544
|
|
| >PRK00919 GMP synthase subunit B; Validated | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.053 Score=51.42 Aligned_cols=39 Identities=33% Similarity=0.418 Sum_probs=31.7
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
+.++ +|+|||.||.+++..+.+. ++.++.++|++||+++
T Consensus 22 ~kVl---Va~SGGVDSsvla~la~~~---lG~~v~aV~vD~G~~~ 60 (307)
T PRK00919 22 GKAI---IALSGGVDSSVAAVLAHRA---IGDRLTPVFVDTGLMR 60 (307)
T ss_pred CCEE---EEecCCHHHHHHHHHHHHH---hCCeEEEEEEECCCCC
Confidence 5566 6999999999999877663 3456889999999985
|
|
| >cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.13 Score=43.07 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=27.4
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
+++|||.||.++++.+.+.. ..++.++|++|+.+.
T Consensus 6 v~lSGG~DSs~ll~l~~~~~---~~~v~~v~~~~g~~~ 40 (154)
T cd01996 6 IGVSGGKDSSYALYLLKEKY---GLNPLAVTVDNGFNS 40 (154)
T ss_pred EECCCchhHHHHHHHHHHHh---CCceEEEEeCCCCCC
Confidence 58999999999999876543 224567899999873
|
Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus. |
| >TIGR00268 conserved hypothetical protein TIGR00268 | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.15 Score=46.87 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=29.8
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
+.++ +++|||.||.++++.+.+. +.++.++|++|+..+
T Consensus 13 ~~vl---Va~SGGvDSs~ll~la~~~----g~~v~av~~~~~~~~ 50 (252)
T TIGR00268 13 KKVL---IAYSGGVDSSLLAAVCSDA----GTEVLAITVVSPSIS 50 (252)
T ss_pred CCEE---EEecCcHHHHHHHHHHHHh----CCCEEEEEecCCCCC
Confidence 4555 6999999999999987664 456789999987543
|
The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server. |
| >PRK05253 sulfate adenylyltransferase subunit 2; Provisional | Back alignment and domain information |
|---|
Probab=87.94 E-value=0.28 Score=46.45 Aligned_cols=41 Identities=32% Similarity=0.528 Sum_probs=33.3
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
+.++ +++|||-||.+|||.+.+.+...+.++.++|++.|.-
T Consensus 28 ~~~v---v~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~ 68 (301)
T PRK05253 28 ENPV---MLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWK 68 (301)
T ss_pred CCEE---EEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCC
Confidence 5554 6999999999999999887765455678899998874
|
|
| >TIGR02039 CysD sulfate adenylyltransferase, small subunit | Back alignment and domain information |
|---|
Probab=87.26 E-value=0.33 Score=45.83 Aligned_cols=37 Identities=35% Similarity=0.542 Sum_probs=31.3
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
.++|||-||.++||.+.+.+...+.++.++|+++|.-
T Consensus 24 v~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~ 60 (294)
T TIGR02039 24 MLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWK 60 (294)
T ss_pred EEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCC
Confidence 4799999999999999888765456678999999975
|
In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. |
| >KOG1684|consensus | Back alignment and domain information |
|---|
Probab=84.47 E-value=12 Score=36.14 Aligned_cols=147 Identities=12% Similarity=0.034 Sum_probs=89.1
Q ss_pred EEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCCch------hHHh-----hch--
Q psy14493 109 SCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFPGI------DAEE-----RGQ-- 174 (318)
Q Consensus 109 ~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~~~------~~e~-----~g~-- 174 (318)
.-++.-|.|. .=.+++.+..+++.-.+.-.++. ..-+|.+--++|-.... .+|. .+.
T Consensus 48 ~r~itLNRPK---------aLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~ 118 (401)
T KOG1684|consen 48 ARVITLNRPK---------ALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVK 118 (401)
T ss_pred eeEEEecCch---------hhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHH
Confidence 3345556665 23677888888888776555444 34566665554422211 1111 111
Q ss_pred --HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHH
Q psy14493 175 --SEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAE 246 (318)
Q Consensus 175 --~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e 246 (318)
+..-......+....+|.|+++-|-..|||.-.....-|.|+++...+++ .-|+.+++....+..+ ....
T Consensus 119 ~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg--~lg~ 196 (401)
T KOG1684|consen 119 KFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG--YLGL 196 (401)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc--HHHH
Confidence 23334445556667899999999999999988887788999888864443 2456666666555443 2222
Q ss_pred Hh-----cccHHHHHHcCCcceeec
Q psy14493 247 AL-----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 247 ~~-----~~~a~~a~~~G~vD~ii~ 266 (318)
++ +++..++...|+...=++
T Consensus 197 YLgLTG~rl~GaD~~~~GlATHyv~ 221 (401)
T KOG1684|consen 197 YLGLTGQRLSGADALRCGLATHYVP 221 (401)
T ss_pred hhhhccceecchHHHHhcchhhccc
Confidence 32 356677777777665553
|
|
| >TIGR00552 nadE NAD+ synthetase | Back alignment and domain information |
|---|
Probab=83.80 E-value=1.3 Score=40.61 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=28.0
Q ss_pred cceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 261 INKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 261 vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
.+.|+ +|+|||.||.++++.+.+.+ +.+..++|.+++..
T Consensus 22 ~~~V~---vglSGGiDSsvla~l~~~~~---~~~~~~~~~~~~~~ 60 (250)
T TIGR00552 22 AKGVV---LGLSGGIDSAVVAALCVEAL---GEQNHALLLPHSVQ 60 (250)
T ss_pred CCCEE---EECCCcHHHHHHHHHHHHhh---CCceEEEEECCccC
Confidence 45565 69999999999988765543 22556778887753
|
NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity. |
| >PLN02347 GMP synthetase | Back alignment and domain information |
|---|
Probab=83.11 E-value=0.99 Score=46.16 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=32.2
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSS 308 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~~ 308 (318)
+.++ +|+|||.||.+++..+.+.+ +.++.++++++|+.+..
T Consensus 230 ~~vv---valSGGVDSsvla~l~~~al---G~~v~av~id~g~~~~~ 270 (536)
T PLN02347 230 EHVI---CALSGGVDSTVAATLVHKAI---GDRLHCVFVDNGLLRYK 270 (536)
T ss_pred CeEE---EEecCChhHHHHHHHHHHHh---CCcEEEEEEeCCCCChh
Confidence 4455 69999999999999887744 34678999999997543
|
|
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=82.90 E-value=7.5 Score=40.24 Aligned_cols=86 Identities=9% Similarity=-0.006 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHhC-CCcEE-EEecC-CCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc
Q psy14493 134 PEGYRKAVRLMHIAEKF-NLPIF-TFIDT-PGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV 210 (318)
Q Consensus 134 ~~~~~K~~r~~~~A~~~-~lPiV-~lvDs-~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~ 210 (318)
+.+...+.+.++.|.+. ++.=| .=+|+ +|..+. ....+.+.+..+...++|+++..-. ...++.|.+..
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~-------~~~ei~~ai~~fk~sgKpVvA~~~~-~~s~~YylAs~ 146 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSP-------HLVEIGSALSEFKDSGKPVYAYGTN-YSQGQYYLASF 146 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHH-------HHHHHHHHHHHHHhcCCeEEEEEcc-ccchhhhhhhh
Confidence 56788899999887654 55544 44664 343222 2345667777777778999985433 23566666677
Q ss_pred ccEEEEEcccEEEEeCh
Q psy14493 211 SDITLMLQYAIYSVISP 227 (318)
Q Consensus 211 ~D~via~~~A~i~v~gP 227 (318)
||.+++.|.+.+.+.|-
T Consensus 147 AD~I~~~p~G~v~~~G~ 163 (584)
T TIGR00705 147 ADEIILNPMGSVDLHGF 163 (584)
T ss_pred CCEEEECCCceEEeece
Confidence 99999999987866553
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >TIGR03573 WbuX N-acetyl sugar amidotransferase | Back alignment and domain information |
|---|
Probab=82.48 E-value=1.1 Score=43.03 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=26.6
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
+|+|||.||..+++.+... ++..+.++|.+|+..
T Consensus 64 V~lSGGkDSs~la~ll~~~---~gl~~l~vt~~~~~~ 97 (343)
T TIGR03573 64 IGVSGGKDSTYQAHVLKKK---LGLNPLLVTVDPGWN 97 (343)
T ss_pred EECCCCHHHHHHHHHHHHH---hCCceEEEEECCCCC
Confidence 5899999999999876442 345556789999986
|
This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an |
| >PRK12563 sulfate adenylyltransferase subunit 2; Provisional | Back alignment and domain information |
|---|
Probab=80.68 E-value=1 Score=42.75 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=31.4
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
..+|||.||.++||.+.+.+...+.++.++|++.|.-
T Consensus 42 v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~ 78 (312)
T PRK12563 42 MLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWK 78 (312)
T ss_pred EEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCC
Confidence 5899999999999999988765456778999999874
|
|
| >PRK08576 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.51 E-value=1.4 Score=43.89 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=27.1
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
+++|||.||.++|+.+.+.+. .+.++|++.|..
T Consensus 239 VafSGGKDStvLL~La~k~~~----~V~aV~iDTG~e 271 (438)
T PRK08576 239 VPWSGGKDSTAALLLAKKAFG----DVTAVYVDTGYE 271 (438)
T ss_pred EEEcChHHHHHHHHHHHHhCC----CCEEEEeCCCCC
Confidence 699999999999998877543 367889998875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 318 | ||||
| 2f9y_A | 339 | The Crystal Structure Of The Carboxyltransferase Su | 1e-75 | ||
| 2f9i_A | 327 | Crystal Structure Of The Carboxyltransferase Subuni | 1e-64 | ||
| 1vrg_A | 527 | Crystal Structure Of Propionyl-coa Carboxylase, Bet | 3e-08 | ||
| 3ibb_A | 530 | Propionyl-Coa Carboxylase Beta Subunit, D422a Lengt | 2e-07 | ||
| 3iav_A | 530 | Propionyl-Coa Carboxylase Beta Subunit, D422v Lengt | 3e-07 | ||
| 3mfm_C | 530 | Crystal Structures And Mutational Analyses Of Acyl- | 3e-07 | ||
| 3ib9_A | 530 | Propionyl-Coa Carboxylase Beta Subunit, D422l Lengt | 3e-07 | ||
| 1xnv_A | 530 | Acyl-Coa Carboxylase Beta Subunit From S. Coelicolo | 3e-07 | ||
| 1xnw_A | 530 | Acyl-Coa Carboxylase Beta Subunit From S. Coelicolo | 3e-07 | ||
| 1x0u_A | 522 | Crystal Structure Of The Carboxyl Transferase Subun | 1e-06 | ||
| 1ni5_A | 433 | Structure Of The Mesj Pp-Atpase From Escherichia Co | 9e-06 | ||
| 1on3_A | 523 | Transcarboxylase 12s Crystal Structure: Hexamer Ass | 1e-05 | ||
| 3n6r_B | 531 | Crystal Structure Of The Holoenzyme Of Propionyl-co | 5e-04 | ||
| 2bzr_A | 548 | Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa Ca | 6e-04 | ||
| 2a7s_A | 548 | Crystal Structure Of The Acyl-Coa Carboxylase, Accd | 6e-04 |
| >pdb|2F9Y|A Chain A, The Crystal Structure Of The Carboxyltransferase Subunit Of Acc From Escherichia Coli Length = 339 | Back alignment and structure |
|
| >pdb|2F9I|A Chain A, Crystal Structure Of The Carboxyltransferase Subunit Of Acc From Staphylococcus Aureus Length = 327 | Back alignment and structure |
|
| >pdb|1VRG|A Chain A, Crystal Structure Of Propionyl-coa Carboxylase, Beta Subunit (tm0716) From Thermotoga Maritima At 2.30 A Resolution Length = 527 | Back alignment and structure |
|
| >pdb|3IBB|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422a Length = 530 | Back alignment and structure |
|
| >pdb|3IAV|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422v Length = 530 | Back alignment and structure |
|
| >pdb|3MFM|C Chain C, Crystal Structures And Mutational Analyses Of Acyl-Coa Carboxylase Subunit Of Streptomyces Coelicolor Length = 530 | Back alignment and structure |
|
| >pdb|3IB9|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422l Length = 530 | Back alignment and structure |
|
| >pdb|1XNV|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor (Pccb), Apo Form #1 Length = 530 | Back alignment and structure |
|
| >pdb|1XNW|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor (Pccb), Apo Form #2, Mutant D422i Length = 530 | Back alignment and structure |
|
| >pdb|1X0U|A Chain A, Crystal Structure Of The Carboxyl Transferase Subunit Of Putative Pcc Of Sulfolobus Tokodaii Length = 522 | Back alignment and structure |
|
| >pdb|1NI5|A Chain A, Structure Of The Mesj Pp-Atpase From Escherichia Coli Length = 433 | Back alignment and structure |
|
| >pdb|1ON3|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly And Substrate Binding To A Multienzyme Core (With Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound) Length = 523 | Back alignment and structure |
|
| >pdb|3N6R|B Chain B, Crystal Structure Of The Holoenzyme Of Propionyl-coa Carboxylase (pcc) Length = 531 | Back alignment and structure |
|
| >pdb|2BZR|A Chain A, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa Carboxylase Beta-Subunit From Mycobacterium Tuberculosis Length = 548 | Back alignment and structure |
|
| >pdb|2A7S|A Chain A, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From Mycobacterium Tuberculosis Length = 548 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Length = 327 | Back alignment and structure |
|---|
Score = 488 bits (1258), Expect = e-175
Identities = 140/274 (51%), Positives = 191/274 (69%), Gaps = 3/274 (1%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQI 60
+ L+FE+P+ ++ KIE L+ Q +++D +EI+ L + T++IY+ L PW
Sbjct: 10 PRGSMLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDR 69
Query: 61 SQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
QIAR +RP TLDYI IF ELHGDRN+ DD ++IG + +NG + VIG Q+G++
Sbjct: 70 VQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKD 129
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
+ I RNFGMA PEGYRKA+RLM AEKFN PIFTFIDT GA+PG AEERGQSE+I
Sbjct: 130 TKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIAT 189
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240
++ M+ LKVP+I+ +IGEGGSGGAL I +++ LML+ + YSVISPEG A++LWK S
Sbjct: 190 NLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNL 249
Query: 241 ASDAAEALGLTADKLKSIGLINKIIKEPIAYSGG 274
A AAE + +TA +K +G+I+ +I EP+ GG
Sbjct: 250 AKIAAETMKITAHDIKQLGIIDDVISEPL---GG 280
|
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Length = 339 | Back alignment and structure |
|---|
Score = 484 bits (1247), Expect = e-174
Identities = 155/277 (55%), Positives = 204/277 (73%), Gaps = 6/277 (2%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSS---NIDTSKEINDLVKKCNKLTEEIYSKLTP 57
M FL+FE+PI +LE KI+ L + +I+ +E++ L +K +LT +I++ L
Sbjct: 21 MSLNFLDFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGA 80
Query: 58 WQISQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQK 117
WQI+Q+ARHP+RPYTLDY+R F + EL GDR Y DD +I+G +AR++G M+IGHQK
Sbjct: 81 WQIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQK 140
Query: 118 GRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEA 177
GR E+I RNFGM PEGYRKA+RLM +AE+F +PI TFIDTPGA+PG+ AEERGQSEA
Sbjct: 141 GRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPGVGAEERGQSEA 200
Query: 178 IGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKT 237
I ++ MS+L VP++ T+IGEGGSGGALAI V D MLQY+ YSVISPEGCASILWK+
Sbjct: 201 IARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKS 260
Query: 238 SKRASDAAEALGLTADKLKSIGLINKIIKEPIAYSGG 274
+ +A AAEA+G+ +LK + LI+ II EP+ GG
Sbjct: 261 ADKAPLAAEAMGIIRPRLKELKLIDSIIPEPL---GG 294
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Length = 588 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 6e-14
Identities = 45/220 (20%), Positives = 83/220 (37%), Gaps = 33/220 (15%)
Query: 67 PKRPY-TLDYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE 123
KRPY + I +F ++ E + YG ++ + G LA++NG VI + +G +N
Sbjct: 320 QKRPYDIYEVIARLFDNSEFSEYK--KGYGPEM-VTG-LAKVNGLLVGVIANVQGLLMNY 375
Query: 124 RIIRNFGMAK-----PEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAI 178
+ + +G K + + + +P+ DT G G +AE+ +
Sbjct: 376 PEYKQNSVGIGGKLYRQGLIKMNEFVTLCARDRIPLIWLQDTTGIDVGDEAEKAE---LL 432
Query: 179 GHS---IYVMSKLKVPLISTIIGEGGSGGALAIAVS------DITLMLQYAI--YSVISP 227
G IY + K+P + I + A + + Y V+
Sbjct: 433 GLGQSLIYSIENSKLPSLEITI--RKASAAAHYVLGGPQGNNTNVFSIGTGACEYYVMPG 490
Query: 228 EGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKE 267
E A+ + R A+ G + IG +N +I+
Sbjct: 491 ETAANAM---YSRKLVKAKKAGEDLQPI--IGKMNDMIQM 525
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Length = 588 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 19/136 (13%)
Query: 87 HGDRNYGDDLSIIGVLARINGESCMVIGHQ---KGRNVNERIIRNFGMAKPEGYRKAVRL 143
+ +G +I+ L R++G+ ++ G P +R
Sbjct: 86 PENNKFGTT-NIVNGLGRVDGKWVYIVASDNKKMA-----------GAWVPGQAENLIRC 133
Query: 144 MHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIY---VMSKLKVPLISTIIGEG 200
A+ +LP+ ++ G + G + +++L +P+I I G
Sbjct: 134 SDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNRRGGGTPFFRNSELNQLGIPVIVGIYGTN 193
Query: 201 GSGGALAIAVSDITLM 216
+GG ++S L+
Sbjct: 194 PAGGGYH-SISPTILI 208
|
| >1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Length = 433 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 4e-13
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 269 IAYSGGIDSSVLLDISFTLFC-NYKIQFYVFHINHGLSPSSDKWLIHCKN 317
+A+SGG+DS+VLL N + H++HGLS ++D W+ HC+N
Sbjct: 18 VAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCEN 67
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Length = 587 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 5e-13
Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 30/225 (13%)
Query: 67 PKRPY-TLDYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE 123
KR Y + I +F +++HE + YG ++ + G LA++NG V+ + +G +N
Sbjct: 317 DKRAYDIYNVIARLFDNSELHEYK--KGYGPEM-VTG-LAKVNGLLVGVVANVQGLLMNY 372
Query: 124 RIIRNFGMAK------PEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEA 177
+ G +G K + + + LPI DT G G DAE+
Sbjct: 373 PEYKAAGSVGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAE---L 429
Query: 178 IGHS---IYVMSKLKVPLISTIIGEGGSGGALAIAVS------DITLMLQYAI--YSVIS 226
+G IY + +P + A + + A +V++
Sbjct: 430 LGLGQSLIYSIQTSHIPQFEITL--RKGTAAAHYVLGGPQGNDTNAFSIGTAATEIAVMN 487
Query: 227 PEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPIAY 271
E A+ ++ + + A D L K LI +
Sbjct: 488 GETAATAMY-SRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSRPK 531
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Length = 587 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 20/137 (14%)
Query: 86 LHGDRNYGDDLSIIGVLARINGESCMVIGHQ---KGRNVNERIIRNFGMAKPEGYRKAVR 142
G++N +I+ L R+NG+ C+V+ G P +R
Sbjct: 85 PQGNKNGSV--AIVKGLGRVNGKWCVVVASDNKKLA-----------GAWVPGQAECLLR 131
Query: 143 LMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIY---VMSKLKVPLISTIIGE 199
A+ ++P+ ++ G + G + +++L +P+I I G
Sbjct: 132 ASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGT 191
Query: 200 GGSGGALAIAVSDITLM 216
+GG ++S ++
Sbjct: 192 NPAGGGYH-SISPTVII 207
|
| >3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Length = 464 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGL-SPSSDKWLIHCKN 317
+ SGG DS LL + +L +K+Q H++H S++ + K
Sbjct: 23 VGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKR 72
|
| >1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Length = 317 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 8e-11
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKI-QFYVFHINHGLSPSSDKWLIHCKN 317
IA+SGG+DS VL D+ L + + + + H NH L S+++ CK
Sbjct: 29 IAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKE 78
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B Length = 555 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 3e-08
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 20/146 (13%)
Query: 80 FTDIHELHGDRNYGDDL---SIIGVLARINGESCMVIGH---QKGRNVNERIIRNFGMAK 133
F ++ L YG+++ I+ + R+ G CM++G+ KG G
Sbjct: 90 FLELSALAAHEVYGEEVAAAGIVAGIGRVEGVECMIVGNDATVKG-----------GTYY 138
Query: 134 PEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIY---VMSKLKV 190
P +K +R IA + LP +D+ GA E E G + MS +
Sbjct: 139 PLTVKKHLRAQAIALENRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSARGI 198
Query: 191 PLISTIIGEGGSGGALAIAVSDITLM 216
P I+ ++G +GGA A+SD T+M
Sbjct: 199 PQIAVVMGSCTAGGAYVPAMSDETVM 224
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B Length = 555 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 7e-07
Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 37/213 (17%)
Query: 67 PKRPYTLDYIREIFT------DIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
K+PY D +RE+ + E +G L + G A ++G I
Sbjct: 317 SKQPY--D-VREVIARLVDGSEFDEFK--ALFGTTL-VCG-FAHLHG---YPIA------ 360
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
I+ N G+ E +K + +A + +P+ + G G E G ++
Sbjct: 361 ----ILANNGILFAEAAQKGAHFIELACQRGIPLLFLQNITGFMVGQKYEAGGIAKHGAK 416
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVS------DITLMLQYAIYSVISPEGCASIL 234
+ ++ +VP + +I GGS GA + M A V+ E A +L
Sbjct: 417 LVTAVACARVPKFTVLI--GGSFGAGNYGMCGRAYDPRFLWMWPNARIGVMGGEQAAGVL 474
Query: 235 WKTSKRASDAAEALGLTADKLKSIGLINKIIKE 267
++ + AE G + + I+++
Sbjct: 475 ---AQVKREQAERAGQQLGVEEEAKIKAPILEQ 504
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 Length = 527 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 4e-08
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
Query: 67 PKRPY-TLDYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE 123
P + Y D I+ + E+ + ++ +IG ARI G++ ++ +Q
Sbjct: 290 PNKGYDVRDVIKRVVDHGEFFEVQ--PYFAKNI-VIG-FARIQGKTVGIVANQPSV---- 341
Query: 124 RIIRNFGMA---KPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
+A + KA R + + FN+PI TF+DTPG PG+ E G I H
Sbjct: 342 -------LAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGI---IRH 391
Query: 181 S---IYVMSKLKVPLISTIIGEGGSGGALAIAVS-----DITLMLQYAIYSVISPEGCAS 232
+Y S+ VP I+ I+ + GGA S D+ L A +V+ PEG A+
Sbjct: 392 GAKLLYAYSEATVPKITVILRK-AYGGAYIAMGSKHLGADMVLAWPSAEIAVMGPEGAAN 450
Query: 233 ILWKTSKRASDAAEAL 248
I++K AS E
Sbjct: 451 IIFKREIEASSNPEET 466
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} Length = 522 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 8e-08
Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 33/196 (16%)
Query: 67 PKRPY-TLDYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE 123
+PY + I +I + E+H +++ ++ I+G ARI G ++ +
Sbjct: 285 AAKPYNMREIIYKIVDNGEFLEVH--KHWAQNI-IVG-FARIAGNVVGIVANNPEE---- 336
Query: 124 RIIRNFGMAK---PEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
+ KA R + + FN+P+ + +DTPG PG D E +G I H
Sbjct: 337 -------FGGSIDIDAADKAARFIRFCDAFNIPLISLVDTPGYVPGTDQEYKG---IIRH 386
Query: 181 S---IYVMSKLKVPLISTIIGEGGSGGALAIAVS-----DITLMLQYAIYSVISPEGCAS 232
+Y ++ VP I+ I+ + GGA D+ A +V PEG
Sbjct: 387 GAKMLYAFAEATVPKITVIVRK-SYGGAHIAMSIKSLGADLVYAWPTAEIAVTGPEGAVR 445
Query: 233 ILWKTSKRASDAAEAL 248
IL++ + + + +
Sbjct: 446 ILYRKEIQQASNPDDV 461
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} Length = 531 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 47/201 (23%), Positives = 78/201 (38%), Gaps = 35/201 (17%)
Query: 67 PKRPY-TLDYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE 123
P PY + I ++ D +E+ + ++ I G R+ G + V+ +Q
Sbjct: 298 PNTPYDMKELIHKLADEGDFYEIQ--EEFAKNI-ITG-FIRLEGRTVGVVANQPLV---- 349
Query: 124 RIIRNFGMAK---PEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
+A + RKA R + + F +P+ T ID PG PG E G I H
Sbjct: 350 -------LAGCLDIDSSRKAARFVRFCDAFEIPLLTLIDVPGFLPGTSQEYGG---VIKH 399
Query: 181 S---IYVMSKLKVPLISTIIGEGGSGGALAIAVS-----DITLMLQYAIYSVISPEGCAS 232
+Y + VP+++ I + GGA + S D A +V+ +G
Sbjct: 400 GAKLLYAYGEATVPMVTVITRK-AYGGAYVVMSSKHLRADFNYAWPTAEVAVMGAKGATE 458
Query: 233 ILWKTSKRASDAAEALGLTAD 253
I+ + D + TAD
Sbjct: 459 IIHR--GDLGDPEKIAQHTAD 477
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Length = 523 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 33/196 (16%)
Query: 67 PKRPY-TLDYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE 123
K+ Y D I +I D E+ Y +L + AR+NG S ++ +Q
Sbjct: 286 GKKGYDVRDVIAKIVDWGDYLEVK--AGYATNL-VTA-FARVNGRSVGIVANQPSV---- 337
Query: 124 RIIRNFGMA---KPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
M+ KA ++ + FN+P+ +D PG PG+ E G I H
Sbjct: 338 -------MSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGI---IRH 387
Query: 181 S---IYVMSKLKVPLISTIIGEGGSGGALAIAVS-----DITLMLQYAIYSVISPEGCAS 232
+Y S+ VP I+ ++ + GG+ + D A +V+ EG A+
Sbjct: 388 GAKMLYAYSEATVPKITVVLRK-AYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAAN 446
Query: 233 ILWKTSKRASDAAEAL 248
++++ +A+D +A+
Sbjct: 447 VIFRKEIKAADDPDAM 462
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* Length = 793 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 4e-07
Identities = 32/212 (15%), Positives = 64/212 (30%), Gaps = 40/212 (18%)
Query: 63 IARHPKRPYTLDYIREI-----FTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQ- 116
+A P + F +I +++ AR+ G VI +
Sbjct: 384 LAGRPHPTLKGSWQSGFFDQGSFKEIMVPWAQ-------TVVTGRARLGGIPVGVIAAET 436
Query: 117 ------------KGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAF 164
+ + I + + P+ K + + + LP+ F + G
Sbjct: 437 RTVELVVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQAIKDFNREKLPLMIFANWRGFS 496
Query: 165 PGIDAEERGQSEAIGHS---IYVMSKLKVPLISTIIGEGGS-GGALAIAVSDITL--MLQ 218
G+ + + + K + P++ I GG+ A+ + I +
Sbjct: 497 GGMKDMYDQ---VLKFGAYIVDGLRKYRQPVLIYIPPYAEVRGGSWAVMDTSINPLCIEM 553
Query: 219 YA-----IYSVISPEGCASILWKTSKRASDAA 245
YA SV+ PEG I ++
Sbjct: 554 YADRESRA-SVLEPEGTVEIKYQKKDLVKTIR 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 6e-07
Identities = 51/408 (12%), Positives = 99/408 (24%), Gaps = 155/408 (37%)
Query: 9 EEPIIKLEKKIEKLRS----------------------------LQFSSNI-----DTSK 35
+P +KL + + +LR + I
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 36 EINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDD 95
+++ KL ++ P S+ + I+ ++ L + Y +
Sbjct: 194 SPETVLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHSIQA---ELRRLLKSKPYENC 246
Query: 96 LSIIGVLARINGESCMVIGHQKGRNV-NERIIRNFGM---------------AKPEGYRK 139
L ++ NV N + F +
Sbjct: 247 LLVL-------------------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 140 AVRLMHIAEKFN----LPIF-TFIDT-PGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLI 193
+ L H + + ++D P P E + + P
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---------REVLTTN---------PRR 329
Query: 194 STIIGEGGSGGAL---------------AIAVS----DITLMLQY----AIY--SVISPE 228
+II E G I S + + +++ S P
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 229 GCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLDISFTLF 288
S++W + + + +KL L+ K KE + I L
Sbjct: 390 ILLSLIWFDVIK-----SDVMVVVNKLHKYSLVEKQPKESTIS--------IPSIYLELK 436
Query: 289 CNYK---------IQFY----VFHINHGLSPSSDK---WLI--HCKNT 318
+ + Y F + + P D+ I H KN
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 7e-05
Identities = 52/378 (13%), Positives = 103/378 (27%), Gaps = 145/378 (38%)
Query: 2 KNIFLNFEEPIIK-LE-KKIEKLRSLQFSSNIDTSKEINDLVKKCNKLT----------- 48
K+I FE+ + + K ++ +I + +EI+ ++ + ++
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQ-----DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 49 --EEIYSKLT--------PWQISQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDD--- 95
EE+ K + +S I ++P + ++ + DR Y D+
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP---SMMTRMYIEQR----DRLYNDNQVF 126
Query: 96 -----------LSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRK----- 139
L + L + + +NV +I G+ G K
Sbjct: 127 AKYNVSRLQPYLKLRQALLEL----------RPAKNV---LI--DGVL---GSGKTWVAL 168
Query: 140 -AVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIG 198
+ K + IF +++ + P
Sbjct: 169 DVCLSYKVQCKMDFKIF-WLN-------------------------LKNCNSP------- 195
Query: 199 EGGSGGALAIAVSDITLMLQYAIYSVISPEGCA--SILWKTSKRASDAAEAL-GLTADKL 255
+ MLQ + I P + R L L K
Sbjct: 196 ------------ETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 256 KSIGLI-------NKIIKEPIAYSGGIDSSVLL---DISFTLFCNYKIQFYVF--HINHG 303
L+ K A++ +LL T F + ++ H +
Sbjct: 243 YENCLLVLLNVQNAKAWN---AFNLS--CKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 304 LSPSSD-----KWLIHCK 316
L+P K+L C+
Sbjct: 298 LTPDEVKSLLLKYL-DCR 314
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A Length = 530 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 7e-07
Identities = 53/202 (26%), Positives = 78/202 (38%), Gaps = 44/202 (21%)
Query: 67 PKRPY-TLDYIREI-----FTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
+PY I + F + L N I+ R+ G +G
Sbjct: 292 ANQPYDMHSVIEHVLDDAEFFETQPLFA-PN------ILTGFGRVEGRP---VG------ 335
Query: 121 VNERIIRNFGMAK-----PEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQS 175
I+ N M KA R + + FN+P+ TF+D PG PG+D E G
Sbjct: 336 ----IVANQPMQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDG-- 389
Query: 176 EAIGHS---IYVMSKLKVPLISTIIGEGGSGGALAIAVS-----DITLMLQYAIYSVISP 227
I I+ ++ VPLI+ I + GGA + S D+ L A +V+
Sbjct: 390 -IIRRGAKLIFAYAEATVPLITVITRK-AFGGAYVVMGSKHLGADLNLAWPTAQIAVMGA 447
Query: 228 EGCASILW-KTSKRASDAAEAL 248
+G +IL +T A D AEA
Sbjct: 448 QGAVNILHRRTIADAGDDAEAT 469
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Length = 758 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 31/181 (17%), Positives = 55/181 (30%), Gaps = 22/181 (12%)
Query: 97 SIIGVLARINGESCMVIGHQ-------------KGRNVNERIIRNFGMAKPEGYRKAVR- 142
++ AR+ G VIG + + I + P K +
Sbjct: 401 GVVVGRARLGGIPLGVIGVETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQA 460
Query: 143 LMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGS 202
+ LP+ + G G + + + K P+I I G
Sbjct: 461 INDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGEL 520
Query: 203 -GGALAIAVSDI--TLMLQYAI----YSVISPEGCASILWKTSKRASDAAEALGLTADKL 255
GG+ + I M YA V+ P+G I ++ ++ D L +L
Sbjct: 521 RGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRR-EKLLDTMNRLDDKYREL 579
Query: 256 K 256
+
Sbjct: 580 R 580
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A Length = 548 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 35/144 (24%), Positives = 52/144 (36%), Gaps = 36/144 (25%)
Query: 67 PKRPY-TLDYIREI----FTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV 121
P +PY + I + F +I + +N I+ RI+G +G
Sbjct: 308 PNQPYDMHEVITRLLDDEFLEIQAGYA-QN------IVVGFGRIDGRP---VG------- 350
Query: 122 NERIIRNFGMAK-----PEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSE 176
I+ N KA R + + FN+PI +D PG PG D E G
Sbjct: 351 ---IVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGI-- 405
Query: 177 AIGHS---IYVMSKLKVPLISTII 197
I +Y + VP I+ I
Sbjct: 406 -IRRGAKLLYAYGEATVPKITVIT 428
|
| >1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 Length = 325 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 2e-04
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 256 KSIGLINKIIKEP----IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGL 304
+SI +I ++ E + YS G DS+V+L ++ F K+ F V H++
Sbjct: 34 ESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRW 86
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 318 | |||
| 2f9y_A | 339 | Acetyl-COA carboxylase, carboxyltransferase alpha; | 100.0 | |
| 2f9i_A | 327 | Acetyl-coenzyme A carboxylase carboxyl transferase | 100.0 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 100.0 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 100.0 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 100.0 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 100.0 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 100.0 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 100.0 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 100.0 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 100.0 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 100.0 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 100.0 | |
| 2f9i_B | 285 | Acetyl-coenzyme A carboxylase carboxyl transferase | 100.0 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 100.0 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 100.0 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 100.0 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 100.0 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 100.0 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 100.0 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 100.0 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 100.0 | |
| 2f9y_B | 304 | Acetyl-coenzyme A carboxylase carboxyl transferas | 100.0 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 100.0 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 100.0 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 99.92 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 99.88 | |
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 99.11 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 99.1 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 99.09 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 99.09 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 99.08 | |
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 99.08 | |
| 3rrv_A | 276 | Enoyl-COA hydratase/isomerase; structural genomics | 99.07 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 99.07 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 99.07 | |
| 3fdu_A | 266 | Putative enoyl-COA hydratase/isomerase; structural | 99.07 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 99.07 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 99.06 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 99.06 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 99.06 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 99.05 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 99.05 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 99.04 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 99.03 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 99.03 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 99.03 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 99.02 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 99.02 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 99.02 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 99.02 | |
| 4fzw_A | 258 | 2,3-dehydroadipyl-COA hydratase; structural genomi | 99.02 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 99.02 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 99.01 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 99.01 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 99.01 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 99.0 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 99.0 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 99.0 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 98.98 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 98.98 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 98.98 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 98.97 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 98.96 | |
| 3oc7_A | 267 | Enoyl-COA hydratase; seattle structural genomics c | 98.96 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 98.96 | |
| 1y7o_A | 218 | ATP-dependent CLP protease proteolytic subunit; hy | 98.93 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 98.93 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 98.93 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 98.93 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 98.93 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 98.93 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 98.92 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 98.92 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 98.92 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 98.91 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 98.9 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 98.89 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 98.89 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 98.88 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 98.88 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 98.87 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 98.87 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 98.86 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 98.85 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 98.85 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 98.85 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 98.84 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 98.84 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 98.84 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 98.83 | |
| 3ju1_A | 407 | Enoyl-COA hydratase/isomerase family protein; alph | 98.82 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 98.82 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; | 98.82 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 98.81 | |
| 3bpt_A | 363 | 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet | 98.81 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 98.8 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 98.79 | |
| 3t3w_A | 279 | Enoyl-COA hydratase; ssgcid, structural genomics, | 98.79 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 98.76 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 98.74 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 98.72 | |
| 2f6i_A | 215 | ATP-dependent CLP protease, putative; structural g | 98.71 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.65 | |
| 3qwd_A | 203 | ATP-dependent CLP protease proteolytic subunit; ca | 98.63 | |
| 1tg6_A | 277 | Putative ATP-dependent CLP protease proteolytic S; | 98.63 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 98.61 | |
| 1yg6_A | 193 | ATP-dependent CLP protease proteolytic subunit; en | 98.6 | |
| 3p2l_A | 201 | ATP-dependent CLP protease proteolytic subunit; st | 98.59 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 98.57 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 98.49 | |
| 4gm2_A | 205 | ATP-dependent CLP protease proteolytic subunit; st | 98.37 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 98.32 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 98.26 | |
| 3rst_A | 240 | Signal peptide peptidase SPPA; alpha/beta protein | 98.22 | |
| 1ni5_A | 433 | Putative cell cycle protein MESJ; structural genom | 98.11 | |
| 3a2k_A | 464 | TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, | 97.97 | |
| 1wy5_A | 317 | TILS, hypothetical UPF0072 protein AQ_1887; N-type | 97.83 | |
| 1sur_A | 215 | PAPS reductase; assimilatory sulfate reduction, 3- | 96.96 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 96.81 | |
| 1zun_A | 325 | Sulfate adenylyltransferase subunit 2; beta barrel | 96.18 | |
| 2o8v_A | 252 | Phosphoadenosine phosphosulfate reductase; disulfi | 95.39 | |
| 3tqi_A | 527 | GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 | 94.56 | |
| 2oq2_A | 261 | Phosphoadenosine phosphosulfate reductase; sulfate | 94.43 | |
| 2dpl_A | 308 | GMP synthetase, GMP synthase [glutamine-hydrolyzin | 93.32 | |
| 1xng_A | 268 | NH(3)-dependent NAD(+) synthetase; amidotransferas | 90.83 | |
| 2goy_A | 275 | Adenosine phosphosulfate reductase; iron sulfur cl | 90.67 | |
| 1k92_A | 455 | Argininosuccinate synthase, argininosuccinate SY; | 90.54 | |
| 3p52_A | 249 | NH(3)-dependent NAD(+) synthetase; structural geno | 90.53 | |
| 2ywb_A | 503 | GMP synthase [glutamine-hydrolyzing]; GMP syntheta | 90.18 | |
| 2der_A | 380 | TRNA-specific 2-thiouridylase MNMA; protein-RNA co | 88.92 | |
| 2wsi_A | 306 | FAD synthetase; transferase, nucleotidyltransferas | 88.85 | |
| 1gpm_A | 525 | GMP synthetase, XMP aminase; class I glutamine ami | 88.02 | |
| 2e18_A | 257 | NH(3)-dependent NAD(+) synthetase; ligase, structu | 86.81 | |
| 3uow_A | 556 | GMP synthetase; structural genomics consortium, SG | 86.03 | |
| 2c5s_A | 413 | THII, probable thiamine biosynthesis protein THII; | 83.71 | |
| 3fiu_A | 249 | NH(3)-dependent NAD(+) synthetase; rossman fold, a | 83.51 | |
| 2vxo_A | 697 | GMP synthase [glutamine-hydrolyzing]; proto-oncoge | 80.43 |
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-57 Score=431.43 Aligned_cols=269 Identities=57% Similarity=0.981 Sum_probs=243.9
Q ss_pred CCccccchhhhHHHHHHHHHHHHhhhh--hc-CCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHh
Q psy14493 1 MKNIFLNFEEPIIKLEKKIEKLRSLQF--SS-NIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIR 77 (318)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~ 77 (318)
|+.+|||||+||.+++++|++|+.... .. ..+..+++.+++++..++.++||++|++|||+++++||++|++.++|+
T Consensus 21 ~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~~r~~~~r~~~rp~~re~I~ 100 (339)
T 2f9y_A 21 MSLNFLDFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVR 100 (339)
T ss_dssp ---CCCSTTHHHHHTTTTTTC---------------CCGGGGTHHHHHTTTTHHHHTCCHHHHHHHHTCTTCCCHHHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHhhcccCCCCCCCHHHHHH
Confidence 556799999999999999999988664 22 344455789999999999999999999999999999999999999999
Q ss_pred hhcccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEE
Q psy14493 78 EIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTF 157 (318)
Q Consensus 78 ~~~d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~l 157 (318)
.+||+|.|+++++.|++|+++|||+|+|+|+||+|++||++.+++++..+++|++++.+++|++|++++|+++++|||+|
T Consensus 101 ~l~D~f~El~g~~~~~~d~avV~G~ari~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~lPlI~l 180 (339)
T 2f9y_A 101 LAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITF 180 (339)
T ss_dssp HHCEEEEECCCCSSSCCCTTEEEEEEEETTEEEEEEEECCCSSTTHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHccccEEccCCcCCCCCCcEEEEEEEECCEEEEEEEEeCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 99999999999888998899999999999999999999999888888999999999999999999999999999999999
Q ss_pred ecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhcc
Q psy14493 158 IDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKT 237 (318)
Q Consensus 158 vDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~ 237 (318)
+||||++++.++|..|+...+++++.+++.+++|+|++|+|+|+|||++.+++||+++|||+|.+++++|++++++++++
T Consensus 181 vDt~Ga~~g~~aE~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~p~A~~~v~~Peg~asil~~~ 260 (339)
T 2f9y_A 181 IDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKS 260 (339)
T ss_dssp EEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSEEEECTTCEEESSCHHHHHHHHSSC
T ss_pred EeCCCCccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcCcHHHHHHhccCeeeecCCCEEEeeccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccchHHHHHHhcccHHHHHHcCCcceeecCcc
Q psy14493 238 SKRASDAAEALGLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 238 ~~~~~~a~e~~~~~a~~a~~~G~vD~ii~~p~ 269 (318)
..+..++++.++++++++++.|+||+|+++|.
T Consensus 261 ~~~~~~Aae~~~itA~~a~~~GlVd~VV~ep~ 292 (339)
T 2f9y_A 261 ADKAPLAAEAMGIIRPRLKELKLIDSIIPEPL 292 (339)
T ss_dssp STTHHHHHHHHTCSHHHHHTTTSCSCCCCCST
T ss_pred hccHHHHHHHcCCCHHHHHHcCCeeEEecCCC
Confidence 87777888888899999999999999999774
|
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-56 Score=423.81 Aligned_cols=268 Identities=51% Similarity=0.880 Sum_probs=245.9
Q ss_pred CccccchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhcc
Q psy14493 2 KNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFT 81 (318)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d 81 (318)
+++|||||+||.+++++|++|+........+..+.+.+.+++..++.+++|++|++|||++++++|++||+.++|+.+||
T Consensus 11 ~~~~~~fe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~re~I~~l~D 90 (327)
T 2f9i_A 11 RGSMLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIFD 90 (327)
T ss_dssp SSCCCGGGHHHHHHHHHHHCC-----------CTTHHHHHHHHHHHHHHHHHSCCHHHHHHHHTBTTSCCHHHHHHHHCE
T ss_pred CCCCCchhhHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhhcccccCCCCCCCHHHHHHHhcc
Confidence 46799999999999999999988665434445557999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy14493 82 DIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTP 161 (318)
Q Consensus 82 ~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~ 161 (318)
+|.|+++++.|+||+++|||+|+|+|+||+|++||++.++++++.+++|++++.+++|++|++++|+++++|||+|+|||
T Consensus 91 ~f~El~~d~~~~~d~~vV~G~gri~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~~PlI~lvdt~ 170 (327)
T 2f9i_A 91 SFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTK 170 (327)
T ss_dssp EEEECCCCSSSCCCTTEEEEEEEETTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred ceEEecCCCCcCcccceEEEEEEECCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 99999998889988999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred CCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccch
Q psy14493 162 GAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241 (318)
Q Consensus 162 Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~~ 241 (318)
|++++.++|..|+...+++++.+++.+++|+|++|+|+|+|||++.+++||+++|||+|.+++++|++++++++++...+
T Consensus 171 Ga~~g~~ae~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v~~peg~a~il~~~~~~a 250 (327)
T 2f9i_A 171 GAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLA 250 (327)
T ss_dssp CSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBSSCHHHHHHHHSSCGGGH
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEeecCchHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987777
Q ss_pred HHHHHHhcccHHHHHHcCCcceeecCcc
Q psy14493 242 SDAAEALGLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 242 ~~a~e~~~~~a~~a~~~G~vD~ii~~p~ 269 (318)
.++++.+++++.++++.|+||+|+++|.
T Consensus 251 ~~A~e~~~itA~~a~~~GlVd~VV~ep~ 278 (327)
T 2f9i_A 251 KIAAETMKITAHDIKQLGIIDDVISEPL 278 (327)
T ss_dssp HHHHHHHTCBHHHHHHTTSSSEEECCCT
T ss_pred HHHHHHcCCCHHHHHHcCCceEEecCCC
Confidence 7788888899999999999999999774
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=351.38 Aligned_cols=225 Identities=20% Similarity=0.373 Sum_probs=202.9
Q ss_pred HhhcCCCCCchh-hHHhhhcc--cccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHH
Q psy14493 62 QIARHPKRPYTL-DYIREIFT--DIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYR 138 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d--~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~ 138 (318)
.+++|+++|||+ ++|+.+|| +|.|++++ |+ +++|||+|||+|+||+||+||+. +++|++++++++
T Consensus 293 ivp~~~~~pyd~r~vI~~l~D~~~f~E~~~~--~~--~~iV~G~arl~G~~Vgvian~~~--------~~~G~l~~~~a~ 360 (531)
T 3n6r_B 293 LVPDNPNTPYDMKELIHKLADEGDFYEIQEE--FA--KNIITGFIRLEGRTVGVVANQPL--------VLAGCLDIDSSR 360 (531)
T ss_dssp TSCSSTTCCCCHHHHHHHHSTTSCCEEESTT--SS--TTEEEEEEEETTEEEEEEEECTT--------TGGGCBCHHHHH
T ss_pred hCCCCcCCCcCHHHHHHhccCCcceEEeccc--CC--CcEEEEEEEECCEEEEEEEeccc--------ccCCCCCHHHHH
Confidence 468899999996 89999999 59999966 88 79999999999999999999998 599999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccEE
Q psy14493 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV----SDIT 214 (318)
Q Consensus 139 K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~----~D~v 214 (318)
|++||+++|+++++|||+|+||+||.++..+|..|+.+++++++.+++.++||+|++|+|+++|||+++++. +|++
T Consensus 361 Kaarfi~lcd~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~ 440 (531)
T 3n6r_B 361 KAARFVRFCDAFEIPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFN 440 (531)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECSBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEE
T ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999885 9999
Q ss_pred EEEcccEEEEeChhHHHHhhhccccchHH-----HHHHh--cccHHHHHHcCCcceeecCccccCCCCchHHHHHHHHHH
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKRASD-----AAEAL--GLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLDISFTL 287 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~~~~-----a~e~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l 287 (318)
+|||+|+++||||+++++|+|+++...++ ..++. ..+|+.+.++|+||+||+ |. |||..|...+++
T Consensus 441 ~awp~A~i~Vm~pegaa~Il~r~~~~~~~~~~~~~~~y~~~~~~p~~aa~~~~vD~vId-P~------~TR~~l~~~l~~ 513 (531)
T 3n6r_B 441 YAWPTAEVAVMGAKGATEIIHRGDLGDPEKIAQHTADYEERFANPFVASERGFVDEVIQ-PR------STRKRVARAFAS 513 (531)
T ss_dssp EECTTCEEESSCHHHHHHHHCCTTTTSTTHHHHHHHHHHHHHSSSHHHHHHTSSSEECC-GG------GHHHHHHHHHHT
T ss_pred EEcCCceEecCCHHHHHHHHhcccccchhHHHHHHHHHHHHhcCHHHHHhcCccCcccC-HH------HHHHHHHHHHHH
Confidence 99999999999999999999998643211 11222 368999999999999999 88 999999999998
Q ss_pred hhccCccccccCCCCCCCCC
Q psy14493 288 FCNYKIQFYVFHINHGLSPS 307 (318)
Q Consensus 288 ~~~~~~~~~~~~~~h~~~~~ 307 (318)
+..+.. ..+.++||+.|.
T Consensus 514 ~~~k~~--~~~~~khg~~p~ 531 (531)
T 3n6r_B 514 LRNKSV--QMPWKKHDNIPL 531 (531)
T ss_dssp TTTCCC--CCCCCSCCCCCC
T ss_pred HhcCcc--cCCCCCCCCCCC
Confidence 877553 356788998763
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-43 Score=348.51 Aligned_cols=225 Identities=22% Similarity=0.380 Sum_probs=202.3
Q ss_pred HhhcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHH
Q psy14493 62 QIARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYR 138 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~ 138 (318)
.+|.|+++|||+ ++|+.+||+ |.|++++ |+ +++|||+|||+|+||+||+||+. +++|++++++++
T Consensus 287 ivp~~~~~~yd~r~~I~~l~D~~~f~E~~~~--~~--~~iV~G~arl~G~~Vgvian~~~--------~~~G~l~~~~a~ 354 (530)
T 3iav_A 287 IVPDSANQPYDMHSVIEHVLDDAEFFETQPL--FA--PNILTGFGRVEGRPVGIVANQPM--------QFAGCLDITASE 354 (530)
T ss_dssp SSCSSTTCCCCHHHHHHTTSGGGCCEEESTT--SC--TTEEEEEEEETTEEEEEEEECTT--------SGGGCBCHHHHH
T ss_pred hccCCCCCCCCHHHHHHHHcCCcceeeeccc--cC--ceEEEEEEEECCEEEEEEEecCc--------ccCCCCCHHHHH
Confidence 357889999996 899999997 9999966 88 79999999999999999999998 599999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccEE
Q psy14493 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV----SDIT 214 (318)
Q Consensus 139 K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~----~D~v 214 (318)
|++||+++|+++++|||+|+||+||.++.++|..|+.+++++++.+++.++||+|++|+|+|+|||+++++. +|++
T Consensus 355 Kaarfi~~c~~~~iPlv~lvDtpGf~~G~~~E~~gi~~~~Ak~l~a~a~a~vP~itvI~g~~~GGa~~am~~~~~~~d~~ 434 (530)
T 3iav_A 355 KAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYVVMGSKHLGADLN 434 (530)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEE
T ss_pred HHHHHHHHHHhcCCCEEEEeeCCCCCccHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEeCCcchHHHHHhcCCCCCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998875 8999
Q ss_pred EEEcccEEEEeChhHHHHhhhccccchH--H--------HHHHh--cccHHHHHHcCCcceeecCccccCCCCchHHHHH
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKRAS--D--------AAEAL--GLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLD 282 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~~~--~--------a~e~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~ 282 (318)
+|||+|+++||||+++++|+|++..... + ..++. ..+|+.+.++|+||+||+ |. |||..|.
T Consensus 435 ~awp~a~~~Vm~~egaa~il~r~~~~~~~~d~~~~~~~~~~~y~~~~~~p~~aa~~~~vD~VId-P~------~TR~~l~ 507 (530)
T 3iav_A 435 LAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIM-PS------DTRRHIV 507 (530)
T ss_dssp EECTTCEEESSCHHHHHHHHTSTTTSTTCTTCHHHHHHHHHHHHHHHSSSHHHHHTTSSSEECC-GG------GHHHHHH
T ss_pred EEcCCceEecCCHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhcCCHHHHHhcCCCCcccC-HH------HHHHHHH
Confidence 9999999999999999999999854321 1 11222 248999999999999999 88 9999999
Q ss_pred HHHHHhhccCccccccCCCCCCCCC
Q psy14493 283 ISFTLFCNYKIQFYVFHINHGLSPS 307 (318)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~h~~~~~ 307 (318)
..++++..+.. ..+.++||+.|.
T Consensus 508 ~~l~~~~~k~~--~~~~kkhg~~p~ 530 (530)
T 3iav_A 508 RGLRQLRTKRE--SLPPKKHGNIPL 530 (530)
T ss_dssp HHHHHHTTCCC--CCCCCSCCCCCC
T ss_pred HHHHHHhcCCc--cCCCCCCCCCCC
Confidence 99998877553 367789999873
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=351.75 Aligned_cols=225 Identities=22% Similarity=0.374 Sum_probs=197.0
Q ss_pred HhhcCCCCCchh-hHHhhhccc-ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHH
Q psy14493 62 QIARHPKRPYTL-DYIREIFTD-IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRK 139 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d~-~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K 139 (318)
.++.|+++|||+ ++|+.+||+ |.|++++ |+ +++|||+|||+|+||+|++||+++ ++|++++++++|
T Consensus 303 ~vp~~~~~pyd~r~~I~~l~D~~f~E~~~~--~~--~~vV~G~ari~G~~Vgvian~~~~--------~~G~l~~~~a~K 370 (548)
T 2bzr_A 303 LIPDSPNQPYDMHEVITRLLDDEFLEIQAG--YA--QNIVVGFGRIDGRPVGIVANQPTH--------FAGCLDINASEK 370 (548)
T ss_dssp TSCSSTTCCCCTHHHHHHHSSSCCEEESTT--SS--TTEEEEEEEETTEEEEEEEECTTS--------GGGCBCHHHHHH
T ss_pred hCCCCCCCCCCHHHHHHHHcCCCeEEeccc--cC--ccEEEEEEEECCEEEEEEEECCcc--------cCCCCCHHHHHH
Confidence 468899999995 899999999 9999965 88 699999999999999999999994 999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccEEE
Q psy14493 140 AVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV----SDITL 215 (318)
Q Consensus 140 ~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~----~D~vi 215 (318)
++|++++|+++++|||+|+||+||++|.++|..|+.+++++++.+++..+||+|++|+|+|+|||+++++. +|+++
T Consensus 371 aar~i~~a~~~~iPlv~lvDt~Gf~~G~~~E~~Gi~~~ga~~l~a~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~ 450 (548)
T 2bzr_A 371 AARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNL 450 (548)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEE
T ss_pred HHHHHHHHHhcCCCEEEEeeccCCCCChHHHHhhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975 99999
Q ss_pred EEcccEEEEeChhHHHHhhhccccchH-----HHH--------HHh--cccHHHHHHcCCcceeecCccccCCCCchHHH
Q psy14493 216 MLQYAIYSVISPEGCASILWKTSKRAS-----DAA--------EAL--GLTADKLKSIGLINKIIKEPIAYSGGIDSSVL 280 (318)
Q Consensus 216 a~~~A~i~v~gP~~~a~il~~~~~~~~-----~a~--------e~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~l 280 (318)
|||+|+++||||+++++|+|++..... +++ ++. ..+|++++++|+||+||+ |. |+|..
T Consensus 451 awp~a~i~Vmgpegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~p~~~a~~g~iD~II~-p~------~tR~~ 523 (548)
T 2bzr_A 451 AWPTAQIAVMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVGAVIP-PS------HTRGY 523 (548)
T ss_dssp ECTTCEEESSCHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHSBSHHHHHTTSSSEECC-GG------GHHHH
T ss_pred EcCCCEEEecCHHHHHHHHhhhHHhhhhcccccHHHHHHHHHHHHHHhhCCHHHHHhcCCCceeeC-HH------HHHHH
Confidence 999999999999999999999854221 111 111 258899999999999999 76 99999
Q ss_pred HHHHHHHhhccCccccccCCCCCCCCC
Q psy14493 281 LDISFTLFCNYKIQFYVFHINHGLSPS 307 (318)
Q Consensus 281 l~~~~~l~~~~~~~~~~~~~~h~~~~~ 307 (318)
|...++.+..+.. ..+.++||+.|.
T Consensus 524 l~~~L~~l~~~~~--~~~~~kh~~~p~ 548 (548)
T 2bzr_A 524 IGTALRLLERKIA--QLPPKKHGNVPL 548 (548)
T ss_dssp HHHHHHHTTTC--------CCCCCCCC
T ss_pred HHHHHHHHhcCcc--cCCCCCCCCCCC
Confidence 9999988766543 246788999873
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=345.30 Aligned_cols=226 Identities=22% Similarity=0.373 Sum_probs=201.6
Q ss_pred HHhhcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHH
Q psy14493 61 SQIARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGY 137 (318)
Q Consensus 61 i~~~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~ 137 (318)
-.++.|+.+||++ ++|+.+||+ |.|++++ |+ +++|||+|||+|+||+||+||+++ ++|+++++++
T Consensus 280 ~~vp~~~~~~~d~r~~I~~l~D~g~f~E~~~~--~~--~~iv~G~ari~G~~Vgvian~~~~--------~~G~~~~~~a 347 (523)
T 1on3_A 280 DIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAG--YA--TNLVTAFARVNGRSVGIVANQPSV--------MSGCLDINAS 347 (523)
T ss_dssp GTSCSSTTCCCCTHHHHHHHSGGGCEEEESTT--SS--TTEEEEEEEETTEEEEEEEECTTS--------GGGCBCHHHH
T ss_pred hhcCCCCCCCCCHHHHHHHhCCCCeEEEecCC--Cc--CcEEEEEEEECCEEEEEEEecCCc--------cCCCCCHHHH
Confidence 3578899999995 899999996 9999976 88 799999999999999999999994 9999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccE
Q psy14493 138 RKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV----SDI 213 (318)
Q Consensus 138 ~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~----~D~ 213 (318)
+|++|++++|+++++|||+|+|||||.+|.++|..|+.+++++++.+++.++||+|++|+|+|+|||+++++. +|+
T Consensus 348 ~Kaar~i~~~~~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~~A~~l~a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~ 427 (523)
T 1on3_A 348 DKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADA 427 (523)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSE
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCCCcCcchHHHHhhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 999
Q ss_pred EEEEcccEEEEeChhHHHHhhhccccch----HHHH-----HHh--cccHHHHHHcCCcceeecCccccCCCCchHHHHH
Q psy14493 214 TLMLQYAIYSVISPEGCASILWKTSKRA----SDAA-----EAL--GLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLD 282 (318)
Q Consensus 214 via~~~A~i~v~gP~~~a~il~~~~~~~----~~a~-----e~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~ 282 (318)
++|||+|+++||||+++++|+|++.... ++.. ++. ..+|++++++|+||+||+ |. |+|..|.
T Consensus 428 ~~a~p~a~~~Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~~~a~~g~iD~II~-p~------~tR~~l~ 500 (523)
T 1on3_A 428 VYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVID-PA------DTRRKIA 500 (523)
T ss_dssp EEECTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECC-GG------GHHHHHH
T ss_pred EEEcCCCeEEecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCHHHHHhcCCCCEeeC-HH------HHHHHHH
Confidence 9999999999999999999999875221 1111 111 268999999999999999 76 9999999
Q ss_pred HHHHHhhccCccccccCCCCCCCCC
Q psy14493 283 ISFTLFCNYKIQFYVFHINHGLSPS 307 (318)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~h~~~~~ 307 (318)
..++.+..+... .+.++||+.|.
T Consensus 501 ~~L~~l~~~~~~--~~~~kh~~~p~ 523 (523)
T 1on3_A 501 SALEMYATKRQT--RPAKKHGNFPC 523 (523)
T ss_dssp HHHHHGGGCCCC--CCCCSCCCCCC
T ss_pred HHHHHHhcCccc--CCCCCCCCCCC
Confidence 999987765532 46788998763
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=343.69 Aligned_cols=227 Identities=24% Similarity=0.405 Sum_probs=202.0
Q ss_pred HHHhhcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHH
Q psy14493 60 ISQIARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEG 136 (318)
Q Consensus 60 Ri~~~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~ 136 (318)
...++.|+++||++ ++|+.+||+ |.|++++ |+ +++|||+|||+|+||+|++||+++ ++|++++++
T Consensus 283 ~~~vp~~~~~pyd~r~~I~~l~D~g~f~E~~~~--~~--~~vV~G~ari~G~~V~via~~~~~--------~~G~~~~~~ 350 (527)
T 1vrg_A 283 LDILPDNPNKGYDVRDVIKRVVDHGEFFEVQPY--FA--KNIVIGFARIQGKTVGIVANQPSV--------LAGVLDIDS 350 (527)
T ss_dssp GGSSCSSTTSCCCTHHHHHHHSGGGCCEEESTT--SS--TTEEEEEEEETTEEEEEEEECTTS--------GGGCBCHHH
T ss_pred hhhccCCCCCCcCHHHHHHHhcCCCeEEEecCC--Cc--CcEEEEEEEECCEEEEEEEEcCcc--------cCCCCCHHH
Confidence 44678899999995 899999997 9999976 88 699999999999999999999994 999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----cc
Q psy14493 137 YRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV----SD 212 (318)
Q Consensus 137 ~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~----~D 212 (318)
++|++|++++|+++++|||+|+||||+++|.++|..|+.+++++++.+++.++||+|++|+|+|+|||+++++. +|
T Consensus 351 ~~Kaar~i~~a~~~~~Plv~lvDtpG~~~G~~~E~~g~~~~~A~~~~a~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d 430 (527)
T 1vrg_A 351 SDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGAD 430 (527)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCS
T ss_pred HHHHHHHHHHHhhcCCCeEEEecCCCCcCchhhHHhHHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976 99
Q ss_pred EEEEEcccEEEEeChhHHHHhhhccccc----hHHHH-----HHh--cccHHHHHHcCCcceeecCccccCCCCchHHHH
Q psy14493 213 ITLMLQYAIYSVISPEGCASILWKTSKR----ASDAA-----EAL--GLTADKLKSIGLINKIIKEPIAYSGGIDSSVLL 281 (318)
Q Consensus 213 ~via~~~A~i~v~gP~~~a~il~~~~~~----~~~a~-----e~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll 281 (318)
+++|||+|+++||||+++++|+|++... .++.. ++. ..+|++++++|+||+||+ |. |+|..|
T Consensus 431 ~~~a~p~a~~~Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~~~~~~g~iD~II~-p~------~tR~~l 503 (527)
T 1vrg_A 431 MVLAWPSAEIAVMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVID-PR------ETRKYI 503 (527)
T ss_dssp EEEECTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECC-GG------GHHHHH
T ss_pred EEEEcCCCeEEecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCHHHHHHcCCCCeeeC-HH------HHHHHH
Confidence 9999999999999999999999987522 11111 111 268999999999999999 76 999999
Q ss_pred HHHHHHhhccCccccccCCCCCCCCC
Q psy14493 282 DISFTLFCNYKIQFYVFHINHGLSPS 307 (318)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~~~h~~~~~ 307 (318)
...++.+..+... .+.++||+.|.
T Consensus 504 ~~~L~~l~~~~~~--~~~~kh~~~p~ 527 (527)
T 1vrg_A 504 MRALEVCETKVEY--RPKKKHGNIPL 527 (527)
T ss_dssp HHHHHHHTTCCCC--CCCCSCCCCCC
T ss_pred HHHHHHHhcCccc--CCCCCCCCCCC
Confidence 9999987765432 46788998763
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-41 Score=333.81 Aligned_cols=225 Identities=23% Similarity=0.429 Sum_probs=199.6
Q ss_pred HhhcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHH
Q psy14493 62 QIARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYR 138 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~ 138 (318)
.++.++.++++. ++|+.+||+ |.|++++ |+ +++|||+|+|+|+||+|++||++ ++||++++.+++
T Consensus 280 v~p~~~~~~~~~r~~I~~l~D~gsF~E~~~~--~~--~~vVtG~ari~G~~V~via~d~~--------~~gG~l~~~~~~ 347 (522)
T 1x0u_A 280 IVPNDAAKPYNMREIIYKIVDNGEFLEVHKH--WA--QNIIVGFARIAGNVVGIVANNPE--------EFGGSIDIDAAD 347 (522)
T ss_dssp HSCSSSSCCCCHHHHHHHHSGGGCCEEETTT--SC--TTEEEEEEEETTEEEEEEEECTT--------TGGGCBCHHHHH
T ss_pred hccCCCCCCCCHHHHHHHhCCCCceEEecCC--Cc--ccEEEEEEEECCEEEEEEEECCC--------ccCCCcCHHHHH
Confidence 357778888885 899999996 9999865 88 69999999999999999999999 599999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccEE
Q psy14493 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV----SDIT 214 (318)
Q Consensus 139 K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~----~D~v 214 (318)
|++|++++|+++++|||+|+||+|+++|...|..|+..++++++.+++..+||+|++|+|+|+|||+|++++ +|++
T Consensus 348 K~ar~i~~a~~~~~Plv~l~ds~G~~~G~~~E~~G~~~~~Ak~l~~~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v 427 (522)
T 1x0u_A 348 KAARFIRFCDAFNIPLISLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLV 427 (522)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEE
T ss_pred HHHHHHHHHhhCCCCEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcccHHHHHhcccccCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999977 9999
Q ss_pred EEEcccEEEEeChhHHHHhhhccccch--------HHHHH-Hh--cccHHHHHHcCCcceeecCccccCCCCchHHHHHH
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKRA--------SDAAE-AL--GLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLDI 283 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~~--------~~a~e-~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~ 283 (318)
+|||+|++++|||+++++|+|++.... ++..+ +. ..+|++++++|+||.||+ |. |+|..|..
T Consensus 428 ~a~p~A~i~v~gpegaa~Il~r~~i~~~~d~~~~~~~l~~~y~~~~~~~~~~~~~G~iD~II~-p~------~tR~~L~~ 500 (522)
T 1x0u_A 428 YAWPTAEIAVTGPEGAVRILYRKEIQQASNPDDVLKQRIAEYRKLFANPYWAAEKGLVDDVIE-PK------DTRRVIVA 500 (522)
T ss_dssp EECTTCEEESSCHHHHHHHHTSSSSSSSSSSSSSSHHHHHHHHHHHSSSHHHHHTTSSSEECC-GG------GHHHHHHH
T ss_pred EEeCCCEEEecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhcCCHHHHHhcCCCcEeEC-HH------HHHHHHHH
Confidence 999999999999999999999885321 11222 22 378999999999999999 66 99999999
Q ss_pred HHHHhhccCccccccCCCCCCCCC
Q psy14493 284 SFTLFCNYKIQFYVFHINHGLSPS 307 (318)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~h~~~~~ 307 (318)
.++.+..+.. ..+.++||+.|.
T Consensus 501 ~L~~~~~~~~--~~~~~kh~~~p~ 522 (522)
T 1x0u_A 501 GLEMLKTKRE--YRYPKKHGNIPL 522 (522)
T ss_dssp HHHHHTTCCC--CCCCCSCCCCCC
T ss_pred HHHHHhhccc--cCCCCCCCCCCC
Confidence 9998866543 246788999763
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=340.88 Aligned_cols=239 Identities=17% Similarity=0.237 Sum_probs=205.4
Q ss_pred hhcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCc-----cchhhccCCCCCH
Q psy14493 63 IARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV-----NERIIRNFGMAKP 134 (318)
Q Consensus 63 ~~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~-----~~~~~~~gG~~~~ 134 (318)
+|.|+++|||+ ++|+.+||+ |.|++++ |+ +++|||+|||+|+||+||+|++.+.. +++...++|++++
T Consensus 316 vP~~~~~pyD~r~vI~~i~D~~~f~E~~~~--~g--~~iV~G~arl~G~pVgvvan~~~~~~~~p~~~~~~~~~~G~l~~ 391 (588)
T 3gf3_A 316 IPMNQKRPYDIYEVIARLFDNSEFSEYKKG--YG--PEMVTGLAKVNGLLVGVIANVQGLLMNYPEYKQNSVGIGGKLYR 391 (588)
T ss_dssp SCSSTTCCCCHHHHHHHHSGGGBCEESSTT--SS--TTEEEEEEEETTEEEEEEEECCSEEETCCTTSSSCEEETTEECH
T ss_pred CCCCCCCCCCHHHHHHHHcCCCcceeeccc--cc--ccEEEEEEEECCEEEEEEEecCCcccccccchhhhhccCCCcCH
Confidence 68899999996 899999996 9999965 88 79999999999999999999987532 2345568999999
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----
Q psy14493 135 EGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV---- 210 (318)
Q Consensus 135 ~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~---- 210 (318)
++++|++||+++|++|++|||+|+|||||.+|.++|..|+.+++++++.+++.++||+|+||+|+++|||+++++.
T Consensus 392 ~~a~Kaarfi~lcd~f~iPlv~lvDtpGf~~G~~aE~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~ 471 (588)
T 3gf3_A 392 QGLIKMNEFVTLCARDRIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEITIRKASAAAHYVLGGPQGN 471 (588)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEEEESSEEETTHHHHTTCTTCT
T ss_pred HHHHHHHHHHHHhhhcCCCeEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCccHHHHHHhcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred c--cEEEEEcccEEEEeChhHHHHhhhccccch-H----------HH-----HHHh-cccHHHHHHcCCcceeecCcccc
Q psy14493 211 S--DITLMLQYAIYSVISPEGCASILWKTSKRA-S----------DA-----AEAL-GLTADKLKSIGLINKIIKEPIAY 271 (318)
Q Consensus 211 ~--D~via~~~A~i~v~gP~~~a~il~~~~~~~-~----------~a-----~e~~-~~~a~~a~~~G~vD~ii~~p~~~ 271 (318)
+ |+++|||+|+++|||||++++|+|+++... + +. +++. ..+|+.+.++|+||+||+ |.
T Consensus 472 ~~~~~~~awp~A~~sVm~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~aA~r~~vD~VId-P~-- 548 (588)
T 3gf3_A 472 NTNVFSIGTGACEYYVMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMIQMYTDKSRPKYCTEKGMVDEIVD-MT-- 548 (588)
T ss_dssp TTEEEEEECTTCEEESSCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHTTSHHHHHHTTSSSEECC-GG--
T ss_pred CccceEEECCCceEEeCCHHHHHHHHhhhHHhhhhccccccchHHHHHHHHHHHHHHhCCHHHHHhcCCCCeeeC-HH--
Confidence 3 499999999999999999999999864321 0 00 0111 369999999999999999 88
Q ss_pred CCCCchHHHHHHHHHHhhccCccccccCCCCCCCCCC-hHHhhh
Q psy14493 272 SGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSS-DKWLIH 314 (318)
Q Consensus 272 sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~~-~~w~~~ 314 (318)
|||..|..+++..-+ .+...+..||++-|.. .+|..|
T Consensus 549 ----~TR~~l~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~ 586 (588)
T 3gf3_A 549 ----EVRPYIQAFTEAAYQ--NPQSICPMHQMLTPRSTREFETF 586 (588)
T ss_dssp ----GHHHHHHHHHHHHTT--SCSCCCCGGGCSHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHc--CCCccCchhhhhhhHHHhhhhhh
Confidence 999999988886543 4567888988887643 455544
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-41 Score=336.52 Aligned_cols=238 Identities=17% Similarity=0.234 Sum_probs=203.6
Q ss_pred CHHHHHHh-hcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccc------hh
Q psy14493 56 TPWQISQI-ARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE------RI 125 (318)
Q Consensus 56 tareRi~~-~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~------~~ 125 (318)
++|+-..+ ++|+++|||+ ++|+.+||+ |.|++++ |+ +++|||+|||+|+||+||+|+++..+++ +.
T Consensus 305 ~~~~l~~ivp~~~~~pyd~r~vI~~l~D~~~f~E~~~~--~~--~~iV~G~arl~G~~VgvIan~~g~~~~~P~~~~~~~ 380 (587)
T 1pix_A 305 PADDLYSMVPLNDKRAYDIYNVIARLFDNSELHEYKKG--YG--PEMVTGLAKVNGLLVGVVANVQGLLMNYPEYKAAGS 380 (587)
T ss_dssp CGGGHHHHSCSSTTSCCCHHHHHHTTSGGGBCEESSTT--SS--TTEEEEEEEETTEEEEEEEECCSEETTCCTTSCTTC
T ss_pred ChHHHhhhCCCCCCCCccHHHHHHHhCCCceEEEeccc--cC--CcEEEEEEEECCEEEEEEEeccCccccccccccccc
Confidence 45555544 9999999995 899999997 9999965 87 7999999999999999999996654333 45
Q ss_pred hccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhh
Q psy14493 126 IRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGA 205 (318)
Q Consensus 126 ~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga 205 (318)
.+++|++++++++|++||+++|+++++|||+|+||+||.+|..+|..|+.+++++++.+++.++||+|++|+|+++|||+
T Consensus 381 ~~~~G~l~~~~a~Kaarfi~~c~~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gA~~~~a~a~a~vP~itvI~g~~~Ggg~ 460 (587)
T 1pix_A 381 VGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAH 460 (587)
T ss_dssp CEETTEECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEETTHH
T ss_pred cccCCCcCHHHHHHHHHHHHHhhcCCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCccHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcc----c--cEEEEEcccEEEEeChhHHHHhhhccccchH--------HHHHHh---------cccHHHHHHcCCcc
Q psy14493 206 LAIAV----S--DITLMLQYAIYSVISPEGCASILWKTSKRAS--------DAAEAL---------GLTADKLKSIGLIN 262 (318)
Q Consensus 206 ~~~~~----~--D~via~~~A~i~v~gP~~~a~il~~~~~~~~--------~a~e~~---------~~~a~~a~~~G~vD 262 (318)
++++. + |+++|||+|+++||||+++++|+|++..... +.++.+ ..+|+++.++|+||
T Consensus 461 ~am~~~~~~~~~d~~~a~p~A~~~Vm~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~p~~aa~~g~iD 540 (587)
T 1pix_A 461 YVLGGPQGNDTNAFSIGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVD 540 (587)
T ss_dssp HHTTCTTCTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSS
T ss_pred HHhcCcccCcccceeeeccCCeEecCCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHHHHHhCCHHHHHhcCCCc
Confidence 99875 7 9999999999999999999999998754321 111111 37999999999999
Q ss_pred eeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 263 KIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 263 ~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
+||+ |. |+|..|...++.+..+.. ....+.+.+-|
T Consensus 541 ~VI~-p~------~tR~~l~~~L~~~~~~~~--~~~g~~r~~~~ 575 (587)
T 1pix_A 541 EIVD-MN------KIRGYVEAFTEAAYQNPE--SICPFHQMILP 575 (587)
T ss_dssp EECC-TT------THHHHHHHHHHHHTTSCS--CCCCGGGCSHH
T ss_pred cccC-HH------HHHHHHHHHHHHHhcCCc--ccCCeeeeehH
Confidence 9999 77 999999999998876553 23344444433
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=329.61 Aligned_cols=231 Identities=23% Similarity=0.266 Sum_probs=194.3
Q ss_pred cccchhhhHHHHHHHHHHHHhhhhhcCCCcHH-HHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhccc
Q psy14493 4 IFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSK-EINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTD 82 (318)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d~ 82 (318)
+..+|.+|.+.|++++++|+++++....+|++ +++|||++ ||||+||||+.++|+|+| |.|
T Consensus 31 ~~~~~~~n~~~~~~~~~~l~~~~~~~~~~gg~~~~~~~~~~---------gkltaReRI~~LlD~gS~---------F~E 92 (555)
T 3u9r_B 31 RSAEFAANAATMLEQVNALRTLLGRIHEGGGSAAQARHSAR---------GKLLVRERINRLLDPGSP---------FLE 92 (555)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHT---------TCCCHHHHHHHHSCTTCC---------EEE
T ss_pred CCHHHHhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcc---------CCCCHHHHHHHHcCCCCC---------EEE
Confidence 35579999999999999999998887666555 99999999 999999999999999995 344
Q ss_pred ccccccCCccCC---CCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEec
Q psy14493 83 IHELHGDRNYGD---DLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFID 159 (318)
Q Consensus 83 ~~el~~~~~~~d---~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvD 159 (318)
+..+.+.+.|.+ +++||||+|+|+|++|+|+++|++ ++||++++.+++|+.|++++|.++++|+|+|+|
T Consensus 93 ~~~l~~~~~y~~~~~~dgVVtG~G~I~Gr~v~V~a~D~t--------v~gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~d 164 (555)
T 3u9r_B 93 LSALAAHEVYGEEVAAAGIVAGIGRVEGVECMIVGNDAT--------VKGGTYYPLTVKKHLRAQAIALENRLPCIYLVD 164 (555)
T ss_dssp ECTTTTTTTSSSCCGGGGEEEEEEEETTEEEEEEEECTT--------TGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred EccccccccccccCCCCcEEEEEEEECCEEEEEEEECCc--------cccCCCCHHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 333444333432 369999999999999999999999 599999999999999999999999999999999
Q ss_pred CCCCCCchhHHhh---chHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHHhhh
Q psy14493 160 TPGAFPGIDAEER---GQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCASILW 235 (318)
Q Consensus 160 s~Ga~~~~~~e~~---g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~il~ 235 (318)
|+|++++++.+.+ ++++.++.++..+++.++|+|++|+|+|+|||+|.++++|+++|.++ ++|++.||+.......
T Consensus 165 SgGARl~~q~~~~~~~~~~~~i~~~~~~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~aGP~vik~~~g 244 (555)
T 3u9r_B 165 SGGANLPRQDEVFPDREHFGRIFFNQANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFLAGPPLVKAATG 244 (555)
T ss_dssp CCCBCGGGGGGTSSSTTSTTHHHHHHHHHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBSSCHHHHHHHHC
T ss_pred CCCCCCCCcceeecccccHHHHHHHHHHHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEEccHHHHHHHhc
Confidence 9999998887765 46789999999999999999999999999999999999999999875 9999999997655443
Q ss_pred ccccchHHHHHHhcccHHHH-HHcCCcceeec
Q psy14493 236 KTSKRASDAAEALGLTADKL-KSIGLINKIIK 266 (318)
Q Consensus 236 ~~~~~~~~a~e~~~~~a~~a-~~~G~vD~ii~ 266 (318)
.. ...++ + -.+... ...|++|.+++
T Consensus 245 e~-~~~e~----L-GGa~~h~~~sGv~d~v~~ 270 (555)
T 3u9r_B 245 EV-VSAEE----L-GGADVHCKVSGVADHYAE 270 (555)
T ss_dssp CC-CCHHH----H-HBHHHHHHTTCSCSEEES
T ss_pred Cc-cChhh----c-cchhhhhhccCceeEEeC
Confidence 32 12211 1 223322 57999999997
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-39 Score=319.13 Aligned_cols=217 Identities=17% Similarity=0.259 Sum_probs=190.7
Q ss_pred HhhcCCCCCch-hhHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHH
Q psy14493 62 QIARHPKRPYT-LDYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYR 138 (318)
Q Consensus 62 ~~~~d~~~~~~-~~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~ 138 (318)
.+|.|+++||| +++|+.++|+ |.|++ +.|+ +++|||+|||+|+||+||+|+ |++++++++
T Consensus 312 ivP~~~~~pyd~r~~i~~i~D~~~f~E~~--~~~g--~~iV~G~ari~G~~Vgvian~-------------G~l~~~~a~ 374 (555)
T 3u9r_B 312 VIPADSKQPYDVREVIARLVDGSEFDEFK--ALFG--TTLVCGFAHLHGYPIAILANN-------------GILFAEAAQ 374 (555)
T ss_dssp HSCSSTTSCCCTHHHHTTTSGGGBCEEES--TTSS--TTEEEEEEEETTEEEEEEEEC-------------SSBCHHHHH
T ss_pred hCCCCccCCccHHHHHhhhcCCceeEEee--ccCC--CcEEEEEEEECCEEEEEEEeC-------------CccCHHHHH
Confidence 45889999999 5899999997 99999 4599 699999999999999999997 889999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccEE
Q psy14493 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV----SDIT 214 (318)
Q Consensus 139 K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~----~D~v 214 (318)
|++||+++|+++++|||+|+|||||.+|..+|..|+.+++++++.+++.++||+|++|+|+++|||+++++. +|++
T Consensus 375 Kaarfi~~c~~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~~~a~~~a~vP~itvi~g~~~Ggg~~am~~~~~~~d~~ 454 (555)
T 3u9r_B 375 KGAHFIELACQRGIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAGNYGMCGRAYDPRFL 454 (555)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEETTHHHHTTCGGGCCSEE
T ss_pred HHHHHHHHHhcCCCCEEEEecCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCccchhhHhhcCccCCCCeE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999873 8999
Q ss_pred EEEcccEEEEeChhHHHHhhhcc---cc-------chHHH-------HHH--hcccHHHHHHcCCcceeecCccccCCCC
Q psy14493 215 LMLQYAIYSVISPEGCASILWKT---SK-------RASDA-------AEA--LGLTADKLKSIGLINKIIKEPIAYSGGI 275 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~---~~-------~~~~a-------~e~--~~~~a~~a~~~G~vD~ii~~p~~~sgg~ 275 (318)
+|||+|+++||||+++++|+|.. .. ..++. .+. ...+|+.+.++|+||+||+ |.
T Consensus 455 ~a~p~A~i~Vmgpegaa~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~y~~~~~p~~aa~r~~vD~vId-P~------ 527 (555)
T 3u9r_B 455 WMWPNARIGVMGGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAPILEQYEHQGHPYYSSARLWDDGVID-PA------ 527 (555)
T ss_dssp EECTTCEEESSCHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHSHHHHHHTTSSSCBCC-GG------
T ss_pred EEcCCcEEEcCCHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHhCCHHHHhhccccCcccC-hH------
Confidence 99999999999999999999832 11 11111 111 1369999999999999999 88
Q ss_pred chHHHHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 276 DSSVLLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 276 ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
|||..|..+++++..+... ..+||+.+
T Consensus 528 ~TR~~l~~~l~~~~~~~~~----~~~~g~~~ 554 (555)
T 3u9r_B 528 QTREVLALALSAALNAPIE----PTAFGVFR 554 (555)
T ss_dssp GHHHHHHHHHHHHTTSCCC----CCCCCCCC
T ss_pred HHHHHHHHHHHHHhcCCCC----CCCCCCcC
Confidence 9999999999988776533 34787754
|
| >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=291.81 Aligned_cols=212 Identities=16% Similarity=0.100 Sum_probs=178.2
Q ss_pred CCCCHHHHHHhhcCCCCCchhh-HHhh----hccccc----ccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccc
Q psy14493 53 SKLTPWQISQIARHPKRPYTLD-YIRE----IFTDIH----ELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE 123 (318)
Q Consensus 53 ~~ltareRi~~~~d~~~~~~~~-~i~~----~~d~~~----el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~ 123 (318)
+++++||||+.+.|+++|.+++ .... -|..+. +......++ +++|||+|+|+|+||+|+++|++
T Consensus 59 ~r~~arerI~~L~D~gsF~El~~~~~~~~~l~f~~y~~~l~~~~~~t~~~--~avVtG~g~I~G~~V~v~a~d~~----- 131 (285)
T 2f9i_B 59 IALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLK--EAVVTGTAQLDGMKFGVAVMDSR----- 131 (285)
T ss_dssp CCCCHHHHHHHTSCTTCCEEESTTCEECCTTCCTTHHHHHHHHHHHHCCS--SSEEEEEEEETTEEEEEEEECTT-----
T ss_pred CCCCHHHHHHHHccCCCcEEECCCcCcCCcccccchhHHHHHHhhccCCC--CeEEEEEEEECCEEEEEEEEccc-----
Confidence 8899999999999999976642 1110 010000 000000133 79999999999999999999999
Q ss_pred hhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchh
Q psy14493 124 RIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSG 203 (318)
Q Consensus 124 ~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~gg 203 (318)
++||++++.+++|++|++++|.++++|||+|+||+|++++++...+.++.+++.++.+++..++|+|++|+|+|+||
T Consensus 132 ---~~gGs~g~~~~~K~~r~ie~A~~~~lPlI~l~dsgGar~qEGi~sl~q~aki~~~l~~~s~~~vP~Isvv~g~~~GG 208 (285)
T 2f9i_B 132 ---FRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGG 208 (285)
T ss_dssp ---TGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEECSCCGGGHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHH
T ss_pred ---cccCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcchhhhhhhHhHHHHHHHHHHHHHcCCCCEEEEEeCCccHH
Confidence 59999999999999999999999999999999999999999988888899999999999998999999999999999
Q ss_pred hhhhh-ccccEEEEEcccEEEEeChhHHHHhhhccccchHHHHHHhcccHHHHHHcCCcceeecCccccCCCCchHHHHH
Q psy14493 204 GALAI-AVSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLD 282 (318)
Q Consensus 204 ga~~~-~~~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~ 282 (318)
+++.+ .++|+++|||+|.|+++||+++..+++.+.. +.+ .+++.+.++|+||.||+ |. |++..|.
T Consensus 209 ~~as~a~~~D~i~a~p~A~i~~aGP~vi~~~~~~~~~------e~~-~~Ae~~~~~G~iD~Iv~-~~------e~r~~l~ 274 (285)
T 2f9i_B 209 VSASFASVGDINLSEPKALIGFAGRRVIEQTINEKLP------DDF-QTAEFLLEHGQLDKVVH-RN------DMRQTLS 274 (285)
T ss_dssp HHTTGGGCCSEEEECTTCBEESSCHHHHHHHHTSCCC------TTT-TBHHHHHHTTCCSEECC-GG------GHHHHHH
T ss_pred HHHHhhhCCCEEEEeCCcEEEEcCHHHHHHHhcccch------HhH-hhHHHHHhcCCccEEeC-hH------HHHHHHH
Confidence 98885 4689999999999999999999999987541 122 47899999999999999 66 8999998
Q ss_pred HHHHHh
Q psy14493 283 ISFTLF 288 (318)
Q Consensus 283 ~~~~l~ 288 (318)
.++.++
T Consensus 275 ~~L~~l 280 (285)
T 2f9i_B 275 EILKIH 280 (285)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888765
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=313.98 Aligned_cols=241 Identities=17% Similarity=0.194 Sum_probs=192.2
Q ss_pred HHHHHHHHHHhhhhhcCCCcHH-HHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhH-HhhhcccccccccCCc
Q psy14493 14 KLEKKIEKLRSLQFSSNIDTSK-EINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDY-IREIFTDIHELHGDRN 91 (318)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~-i~~~~d~~~el~~~~~ 91 (318)
.|++++++|+++++....+|++ +++|||++ |||||||||+.++|+++|.+++- ...-..+|. +..+..
T Consensus 21 ~~~~~~~~l~~~~~~~~~~gg~~~~~~~~~~---------gkltaReRI~~LlD~gSF~E~~~~~~~~~~~~~-~~~~~~ 90 (531)
T 3n6r_B 21 MMKDILEQLEDRRAAARLGGGQKRIDAQHGR---------GKLTARERVDLLLDEGSFEEFDMFVTHRCTDFN-MQDQKP 90 (531)
T ss_dssp -----CHHHHHHHHHHTTTTCHHHHHHHHHT---------TCCCHHHHHHHHSSSSCCEEECTTCCCCCCGGG-GGGCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHhc---------CCCCHHHHHHHhcCCCceEEcCCccccCCcccc-cccccC
Confidence 4688899999988887766655 99999999 99999999999999999888753 322222232 111233
Q ss_pred cCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHh
Q psy14493 92 YGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEE 171 (318)
Q Consensus 92 ~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~ 171 (318)
++ ++||||+|+|+|++|+|+++|++ ++||++++..++|++|++++|.++++|+|.|+||+|++++++.+.
T Consensus 91 ~~--dgVVtG~G~I~Gr~v~v~a~D~t--------~~gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSGGARmqeg~~s 160 (531)
T 3n6r_B 91 AG--DGVVTGWGTINGRVVYVFSQDFT--------VLGGSVSETHSKKICKIMDMAMQNGAPVIGINDSGGARIQEGVDS 160 (531)
T ss_dssp TT--TTEEEEEEEETTEEEEEEEECTT--------SGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGTHHH
T ss_pred CC--CCEEEEEEEECCEEEEEEEECCC--------cccccccHHHHHHHHHHHHHHHHcCCCEEEEeCCCccccCcccch
Confidence 44 69999999999999999999999 599999999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHHhhhccccchHHHHHHhcc
Q psy14493 172 RGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCASILWKTSKRASDAAEALGL 250 (318)
Q Consensus 172 ~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~ 250 (318)
+.+++.++..+..+++. +|+|++|+|+|+||++|.++++|++||+++ |.|+++||+.....+..+. ..++ + -
T Consensus 161 l~~~~~i~~~~~~~s~~-iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~aGP~vI~~~~ge~v-~~E~----L-G 233 (531)
T 3n6r_B 161 LAGYGEVFQRNIMASGV-VPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPDVVKTVTNEQV-SAEE----L-G 233 (531)
T ss_dssp HHHHHHHHHHHHHTTTT-SCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSSCHHHHHHHHCCCC-CHHH----H-H
T ss_pred hhhHHHHHHHHHHHhCC-CCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEeecCHHHHHHHhCCcc-Chhh----c-c
Confidence 88889999999999864 999999999999999999999999999997 9999999998766554332 2222 1 1
Q ss_pred cHHH-HHHcCCcceeecCccccCCCCchHHHHHHHHHHhhc
Q psy14493 251 TADK-LKSIGLINKIIKEPIAYSGGIDSSVLLDISFTLFCN 290 (318)
Q Consensus 251 ~a~~-a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~ 290 (318)
.+.. ..+.|++|.+++ |....+..+.+++..
T Consensus 234 Ga~~h~~~sG~~d~v~~---------~e~~a~~~~r~lls~ 265 (531)
T 3n6r_B 234 GATTHTRKSSVADAAFE---------NDVEALAEVRRLVDF 265 (531)
T ss_dssp BHHHHHHTTSCCSEEES---------SHHHHHHHHHHHHTT
T ss_pred hHHHHhhccCcceEEeC---------CHHHHHHHHHHHHHh
Confidence 2222 268999999997 444455555555443
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-38 Score=312.76 Aligned_cols=240 Identities=17% Similarity=0.146 Sum_probs=197.6
Q ss_pred HHHHHHHHHhhhhhcCCCcHH-HHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhh-HHhhhcccccccccCCcc
Q psy14493 15 LEKKIEKLRSLQFSSNIDTSK-EINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLD-YIREIFTDIHELHGDRNY 92 (318)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~-~i~~~~d~~~el~~~~~~ 92 (318)
|++++++|+++++....+|++ +++|||++ ++||+||||+.++|+++|.+++ +......+|. +.....+
T Consensus 25 ~~~~~~~l~~~~~~~~~gg~~~~~~~~~~~---------gkltareRi~~LlD~gsF~E~~~~~~~~~~~f~-~~~~~~~ 94 (548)
T 2bzr_A 25 TAGKLAELHKRREESLHPVGEDAVEKVHAK---------GKLTARERIYALLDEDSFVELDALAKHRSTNFN-LGEKRPL 94 (548)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHT---------TCCCHHHHHHHHSCTTCCEEESTTCCCCCCSTT-GGGCCCT
T ss_pred HHHHHHHHHHHHHHHHhcCCHhHHHHHHhc---------CCCCHHHHHHHhcCCCceEEeCCccccCCCccc-cccccCC
Confidence 678899999998887776655 89999999 9999999999999999987764 2222112231 2222223
Q ss_pred CCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhh
Q psy14493 93 GDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEER 172 (318)
Q Consensus 93 ~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~ 172 (318)
+ ++||||+|+|+|++|+|+++|++ ++|||+++..++|++|++++|.+.++|+|.|+||+|++++++.+.+
T Consensus 95 ~--dgvVtG~G~I~Gr~v~v~a~D~t--------~~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSGGARmqeg~~sl 164 (548)
T 2bzr_A 95 G--DGVVTGYGTIDGRDVCIFSQDAT--------VFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQEGVVSL 164 (548)
T ss_dssp T--TTEEEEEEEETTEEEEEEEECTT--------SGGGCCCHHHHHHHHHHHHHHHHHTCCEEEEECCCSCCGGGTTHHH
T ss_pred C--CcEEEEEEEECCEEEEEEEEcCc--------cccCCCChhHHHHHHHHHHHHHHcCCCEEEEEcCCCCCchhHHHHH
Confidence 4 69999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHHhhhccccchHHHHHHhccc
Q psy14493 173 GQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCASILWKTSKRASDAAEALGLT 251 (318)
Q Consensus 173 g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~ 251 (318)
.+++.++..+..+++. +|+|++|+|+|+||++|.++++|++||+++ |.|++.||+.....+.... ..++ ..+
T Consensus 165 ~~~~~i~~~~~~~s~~-iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~aGP~vI~~~~ge~v-~~e~-----lgg 237 (548)
T 2bzr_A 165 GLYSRIFRNNILASGV-IPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGPDVIKTVTGEEV-TMEE-----LGG 237 (548)
T ss_dssp HHHHHHHHHHHHTTTT-SCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCCC-CHHH-----HHB
T ss_pred HHHHHHHHHHHHhcCC-CcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEeccHHHHHHHhCCcC-ChHh-----ccc
Confidence 9999999999988775 999999999999999999999999999998 9999999998776665432 2222 246
Q ss_pred HHHHH-HcCCcceeecCccccCCCCchHHHHHHHHHHhhc
Q psy14493 252 ADKLK-SIGLINKIIKEPIAYSGGIDSSVLLDISFTLFCN 290 (318)
Q Consensus 252 a~~a~-~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~ 290 (318)
+.... +.|++|.+++ |....+..+.+++..
T Consensus 238 ae~h~~~sG~~d~vv~---------d~~~~~~~~r~lls~ 268 (548)
T 2bzr_A 238 AHTHMAKSGTAHYAAS---------GEQDAFDYVRELLSY 268 (548)
T ss_dssp HHHHHHTSSCCSEEES---------SHHHHHHHHHHHHTT
T ss_pred HHHHhhccCceeEEeC---------CHHHHHHHHHHHHHh
Confidence 66665 6999999997 444444444444443
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=311.90 Aligned_cols=225 Identities=19% Similarity=0.186 Sum_probs=188.4
Q ss_pred HHHHHHHHHhhhhhcCCCcHH-HHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhH-HhhhcccccccccCCcc
Q psy14493 15 LEKKIEKLRSLQFSSNIDTSK-EINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDY-IREIFTDIHELHGDRNY 92 (318)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~-i~~~~d~~~el~~~~~~ 92 (318)
..+++++|+++++....+|++ +++|||++ ||||+||||+.++|+++|.+++. ......+|. +.....+
T Consensus 14 ~~~~~~~l~~~~~~~~~~gg~~~~~~~~~~---------gkl~aReRI~~LlD~gSF~E~~~~~~~~~~~f~-~~~~~~~ 83 (530)
T 3iav_A 14 TAGKLADLRRRIEEATHAGSARAVEKQHAK---------GKLTARERIDLLLDEGSFVELDEFARHRSTNFG-LDANRPY 83 (530)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHHHT---------TCCCHHHHHHHHSCTTCCEEESTTCCCCCCGGG-GGGCCCT
T ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHhc---------CCCCHHHHHHHhcCCCCeEEcCCccccCCCCcc-cccccCC
Confidence 457788999988887666655 99999999 99999999999999999877642 222122232 2222334
Q ss_pred CCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhh
Q psy14493 93 GDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEER 172 (318)
Q Consensus 93 ~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~ 172 (318)
+ ++||||+|+|+|++|+|+++|++ ++||++++..++|++|++++|.++++|+|+|+||+|++++++...+
T Consensus 84 ~--dgvVtG~G~I~Gr~v~v~a~D~t--------v~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSgGaRmqEg~~~l 153 (530)
T 3iav_A 84 G--DGVVTGYGTVDGRPVAVFSQDFT--------VFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVASL 153 (530)
T ss_dssp T--TTEEEEEEEETTEEEEEEEECTT--------SGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGGGTHHHH
T ss_pred C--CcEEEEEEEECCEEEEEEEECCC--------cceEeccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcchhhhhhhH
Confidence 5 69999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHHhhhccccchHHHHHHhccc
Q psy14493 173 GQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCASILWKTSKRASDAAEALGLT 251 (318)
Q Consensus 173 g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~ 251 (318)
.+++.++..+..+++. +|+|++|+|+|+||++|.+++||++||+++ |.|+++||+.....+... ...++. ..
T Consensus 154 ~~~~~i~~~~~~~s~~-iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~aGP~vi~~~~ge~-v~~e~L-----GG 226 (530)
T 3iav_A 154 GAYGEIFRRNTHASGV-IPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGED-VGFEEL-----GG 226 (530)
T ss_dssp HHHHHHHHHHHHTTTT-SCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCC-CCHHHH-----HB
T ss_pred HHHHHHHHHHHHHcCC-CCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEecCHHHHHHHhCCc-CChhhc-----ch
Confidence 9999999999999996 999999999999999999999999999997 999999999876655433 222221 23
Q ss_pred HHHH-HHcCCcceeec
Q psy14493 252 ADKL-KSIGLINKIIK 266 (318)
Q Consensus 252 a~~a-~~~G~vD~ii~ 266 (318)
+... ...|++|.+.+
T Consensus 227 a~~h~~~sGv~d~va~ 242 (530)
T 3iav_A 227 ARTHNSTSGVAHHMAG 242 (530)
T ss_dssp HHHHHHTSCCCSEEES
T ss_pred HHHHHhccCceeEEec
Confidence 3333 57999999996
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=319.17 Aligned_cols=231 Identities=18% Similarity=0.215 Sum_probs=195.3
Q ss_pred hhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhccccccccc
Q psy14493 9 EEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHELHG 88 (318)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d~~~el~~ 88 (318)
++|.+.+++++++|+++++....+| ++++|+|++ ++||+||||+.++|+|+|.+.+-. | .+ ..
T Consensus 25 ~~n~~~~~~~~~~l~~~~~~~~~~g-~~~~~~~~~---------gkltareRI~~LlD~gsF~E~~~~---y---~~-~~ 87 (587)
T 1pix_A 25 AANEEQLKKIEEEIHQLIKEAQEAG-KADADVNKR---------GELTALQRIEKLVEPGSWRPLNTL---F---NP-QG 87 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCS-SCHHHHHHT---------TCCCHHHHHHHHSCTTCCEEESTT---C---CT-TC
T ss_pred hhCHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHhc---------CCCCHHHHHHHHcCCCCceEhhhh---c---ch-hh
Confidence 7899999999999999998877777 889999999 999999999999999996553210 1 10 00
Q ss_pred CCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchh
Q psy14493 89 DRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGID 168 (318)
Q Consensus 89 ~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~ 168 (318)
...++ ++||||+|+|+|++|+|+++|++ ++||++++.+++|+.|++++|.++++|+|+|+||+|++++++
T Consensus 88 ~~~~~--dgvVtG~G~I~Gr~v~v~a~D~t--------~~gGs~g~~~~~Ki~r~~e~A~~~~lPvI~l~dSgGArlqe~ 157 (587)
T 1pix_A 88 NKNGS--VAIVKGLGRVNGKWCVVVASDNK--------KLAGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQ 157 (587)
T ss_dssp CTTSC--CSEEEEEEEETTEEEEEEEECTT--------TTTTEECTTHHHHHHHHHHHHHHHTCCEEEEECCCEECGGGH
T ss_pred hcCCC--CcEEEEEEEECCEEEEEEEECCc--------cccCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCcccc
Confidence 12233 69999999999999999999999 599999999999999999999999999999999999999999
Q ss_pred HHhhc---hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHH---hhhccccch
Q psy14493 169 AEERG---QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCAS---ILWKTSKRA 241 (318)
Q Consensus 169 ~e~~g---~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~---il~~~~~~~ 241 (318)
.+.+. +++.++.++..+++.++|+|++|+|+|+|||+|. +++|+++|+++ |+|+++||+.... ++|.+..++
T Consensus 158 ~~~l~~~~~~g~i~~~~~~ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~~~~~d~~~A 236 (587)
T 1pix_A 158 EKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYA 236 (587)
T ss_dssp HHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHH
T ss_pred chhccccccHHHHHHHHHHHhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhccccccchhHH
Confidence 99873 5688999999999999999999999999999999 99999999986 9999999975443 566665555
Q ss_pred HHHHHHh--c------ccHHHHH-HcCCcceeecC
Q psy14493 242 SDAAEAL--G------LTADKLK-SIGLINKIIKE 267 (318)
Q Consensus 242 ~~a~e~~--~------~~a~~a~-~~G~vD~ii~~ 267 (318)
.++.+.. + .++.... +.|++|.+++.
T Consensus 237 ~el~~~tge~v~~e~lgga~~h~~~~GvvD~vv~~ 271 (587)
T 1pix_A 237 NEIADMVDRTGKTEPPGAVDIHYTETGFMREVYAS 271 (587)
T ss_dssp HHHHHHHHTTCCCCCSSBHHHHTTTSCCSCEEESS
T ss_pred HHHHHHhCCccChhhcccHHHHHhhcCceeEecCC
Confidence 5555443 1 3455555 59999999973
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=308.72 Aligned_cols=225 Identities=16% Similarity=0.112 Sum_probs=189.0
Q ss_pred HHHHHHHHHhhhhhcCCCcHH-HHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhh-HHhhhcccccccccCCcc
Q psy14493 15 LEKKIEKLRSLQFSSNIDTSK-EINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLD-YIREIFTDIHELHGDRNY 92 (318)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~-~i~~~~d~~~el~~~~~~ 92 (318)
|++++++|+++++....+|++ +++|||++ |+||+||||+.++|+++|.+++ .+.....+| .+.....+
T Consensus 12 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~---------g~l~areRi~~LlD~gsF~E~~~~~~~~~~~f-~l~~~~~~ 81 (523)
T 1on3_A 12 MEGRVEQLAEQRQVIEAGGGERRVEKQHSQ---------GKQTARERLNNLLDPHSFDEVGAFRKHRTTLF-GMDKAVVP 81 (523)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHT---------TCCCHHHHHHHHSCTTCCEEECTTCCCCCCTT-TTTTCCCG
T ss_pred HHHHHHHHHHHHHHHHhcCCHhHHHHHHhc---------CCCCHHHHHHHhcCCCccEEeCCccccCCCcc-ccccccCC
Confidence 677888898888886666554 89999999 9999999999999999987764 222211223 12111223
Q ss_pred CCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhh
Q psy14493 93 GDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEER 172 (318)
Q Consensus 93 ~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~ 172 (318)
+ ++||||+|+|+|++|+|+++|++ ++|||+++..++|++|++++|.+.++|+|.|+||+|++++++.+.+
T Consensus 82 ~--dgvvtG~G~I~Gr~v~v~a~D~t--------~~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~~SGGARmqeg~~sl 151 (523)
T 1on3_A 82 A--DGVVTGRGTILGRPVHAASQDFT--------VMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSL 151 (523)
T ss_dssp G--GGEEEEEEEETTEEEEEEEECTT--------TGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGGGTHHHH
T ss_pred C--CcEEEEEEEECCEEEEEEEEcCC--------ccCCcCcHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCChhhHHHHH
Confidence 4 69999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccchHHHHHHhcccH
Q psy14493 173 GQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTA 252 (318)
Q Consensus 173 g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a 252 (318)
.+++.++..+..+++. +|+|++|+|+|+||++|.++++|++||+|+|.|++.||+.....+.... ..++ ..++
T Consensus 152 ~~~~~i~~~~~~~s~~-iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~aGP~vI~~~~ge~~-~~e~-----lgga 224 (523)
T 1on3_A 152 SGYGKMFFANVKLSGV-VPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDV-TADE-----LGGA 224 (523)
T ss_dssp HHHHHHHHHHHHHTTT-SCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCHHHHHHHHCCCC-CHHH-----HHSH
T ss_pred HHHHHHHHHHHHhcCC-CCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEecCHHHHHHHhCCcC-ChHh-----cccH
Confidence 9999999999988775 9999999999999999999999999999999999999998766664432 2222 1466
Q ss_pred HHHH-HcCCcceeec
Q psy14493 253 DKLK-SIGLINKIIK 266 (318)
Q Consensus 253 ~~a~-~~G~vD~ii~ 266 (318)
+... +.|++|.+++
T Consensus 225 e~h~~~~G~vd~vv~ 239 (523)
T 1on3_A 225 EAHMAISGNIHFVAE 239 (523)
T ss_dssp HHHHHTTCCCSEEES
T ss_pred HHHhhccCceEEEeC
Confidence 6665 6999999997
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=305.79 Aligned_cols=226 Identities=20% Similarity=0.191 Sum_probs=188.6
Q ss_pred HHHHHHHHHHhhhhhcCCCcHH-HHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhh-HHhhhcccccccccCCc
Q psy14493 14 KLEKKIEKLRSLQFSSNIDTSK-EINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLD-YIREIFTDIHELHGDRN 91 (318)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~-~i~~~~d~~~el~~~~~ 91 (318)
.|++++++|+++++....+|++ +++|||++ |+||+||||+.++|+++|.+++ .+.....+| .+.....
T Consensus 7 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~---------g~l~areRi~~LlD~gsf~E~~~~~~~~~~~f-~~~~~~~ 76 (522)
T 1x0u_A 7 PVEKLIEELRQLKEKAYKGGGDERIQFQHSK---------GKLTARERLALLFDDGKFNEIMTFATTRATEF-GLDKQRF 76 (522)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHTT---------TCCCHHHHHHHHSSSSCCEESSSSCCCCCCGG-GTTTCCC
T ss_pred hHHHHHHHHHHHHHHHHhcCCHhHHHHHHhc---------CCCCHHHHHHHhccCCccEEeCCcccCCCCcc-ccccccC
Confidence 4567788888888876556554 89999999 9999999999999999988764 222211223 1222222
Q ss_pred cCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHh
Q psy14493 92 YGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEE 171 (318)
Q Consensus 92 ~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~ 171 (318)
++ ++||||+|+|+|++|+|+++|++ ++|||+++..++|++|++++|.+.++|+|.|+||+|++++++.+.
T Consensus 77 ~~--dgvvtG~G~i~Gr~v~v~a~D~t--------~~gGS~g~~~~~Ki~ra~e~A~~~~~P~I~l~~SGGaRmqeg~~s 146 (522)
T 1x0u_A 77 YG--DGVVTGWGKVDGRTVFAYAQDFT--------VLGGSLGETHANKIVRAYELALKVGAPVVGINDSGGARIQEGALS 146 (522)
T ss_dssp TT--TTEEEEEEEETTEEEEEEEECTT--------TGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGGGTHHH
T ss_pred CC--CcEEEEEEEECCEEEEEEEecCc--------eeCccccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHH
Confidence 34 69999999999999999999999 599999999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-c-EEEEeChhHHHHhhhccccchHHHHHHhc
Q psy14493 172 RGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-A-IYSVISPEGCASILWKTSKRASDAAEALG 249 (318)
Q Consensus 172 ~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A-~i~v~gP~~~a~il~~~~~~~~~a~e~~~ 249 (318)
+.+++.++..+..+++. +|+|++|+|+|+||++|.++++|++||+|+ | .|+++||+.....+.... ..++ .
T Consensus 147 l~~~~~i~~~~~~~s~~-iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~aGP~vI~~~~ge~~-~~e~-----l 219 (522)
T 1x0u_A 147 LEGYGAVFKMNVMASGV-IPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVTGPEITKVVLGEEV-SFQD-----L 219 (522)
T ss_dssp HHHHHHHHHHHHHHTTT-SCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEESSCHHHHHHTTCCCC-CHHH-----H
T ss_pred HHHHHHHHHHHHHhCCC-CcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEecCHHHHHHHhCCcC-Chhh-----c
Confidence 99999999999988775 999999999999999999999999999998 9 999999998766554432 2222 2
Q ss_pred ccHHHHH-HcCCcceeec
Q psy14493 250 LTADKLK-SIGLINKIIK 266 (318)
Q Consensus 250 ~~a~~a~-~~G~vD~ii~ 266 (318)
.++.... +.|++|.+++
T Consensus 220 ggae~~~~~~G~~d~vv~ 237 (522)
T 1x0u_A 220 GGAVVHATKSGVVHFMVD 237 (522)
T ss_dssp HBHHHHHHTTCCCSEEES
T ss_pred chHHHHhhcCceeEEEeC
Confidence 4666665 6999999997
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-37 Score=304.73 Aligned_cols=240 Identities=19% Similarity=0.195 Sum_probs=193.5
Q ss_pred HHHHHHHHHhhhhhcCCCcH-HHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhH-HhhhcccccccccCCcc
Q psy14493 15 LEKKIEKLRSLQFSSNIDTS-KEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDY-IREIFTDIHELHGDRNY 92 (318)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~-i~~~~d~~~el~~~~~~ 92 (318)
+.+++++|+++++....+|+ ++++|+|++ ++||+||||+.++|+++|.+++- ...-..+|. +.....+
T Consensus 15 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~---------g~l~areRi~~LlD~gsF~E~~~~~~~~~~~f~-~~~~~~~ 84 (527)
T 1vrg_A 15 LRDKIEELKKIEKEIEQGGGPEKVEKQHRA---------GKLTAWERLELLLDPGTFVEIDKFVEHRNTYFG-LDKVKLP 84 (527)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHT---------TCCCHHHHHHHHSCTTCCEEECTTCCCCCCGGG-GGGCCCG
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHhc---------CCCCHHHHHHHHccCCceEEcccccccCCcccC-cccccCC
Confidence 66778888888887655554 489999999 99999999999999999877642 221111231 2111223
Q ss_pred CCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhh
Q psy14493 93 GDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEER 172 (318)
Q Consensus 93 ~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~ 172 (318)
+ +++|||+|+|+|++|+|+++|++ ++||++++..++|++|++++|.++++|+|+|+||+|++++++.+.+
T Consensus 85 ~--dgvVtG~G~i~Gr~v~v~a~D~t--------~~gGS~g~~~~~Ki~r~~e~A~~~~lPvI~l~dSgGAR~qeg~~~l 154 (527)
T 1vrg_A 85 R--DGVITGVGEINGRKVAVFSQDFT--------VMGGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQEGVDAL 154 (527)
T ss_dssp G--GGEEEEEEEETTEEEEEEEECTT--------TGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGGGTHHHH
T ss_pred C--CcEEEEEEEECCEEEEEEEEecc--------ccCccccHHHHHHHHHHHHHHHHcCCCEEEEECCCCCCccchhHHH
Confidence 3 69999999999999999999999 5999999999999999999999999999999999999999999988
Q ss_pred chHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHHhhhccccchHHHHHHhccc
Q psy14493 173 GQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCASILWKTSKRASDAAEALGLT 251 (318)
Q Consensus 173 g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~ 251 (318)
.+++.++..+..++. .+|+|++|+|+|+||++|.++++|++||+++ |+|+++||+.....+.... ..++ ..+
T Consensus 155 ~g~~~~~~~~~~~s~-~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~aGP~vi~~~~ge~v-~~e~-----lgg 227 (527)
T 1vrg_A 155 AGYGEIFLRNTLASG-VVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITGPNVIKAVTGEEI-SQED-----LGG 227 (527)
T ss_dssp HHHHHHHHHHHHHTT-TSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSSCHHHHHHHHCCCC-CHHH-----HHB
T ss_pred HHHHHHHHHHHHhCC-CCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEecCHHHHHHHhCCCC-Cccc-----ccc
Confidence 888888888877766 5999999999999999999999999999998 9999999998777665432 2222 146
Q ss_pred HHHHH-HcCCcceeecCccccCCCCchHHHHHHHHHHhhc
Q psy14493 252 ADKLK-SIGLINKIIKEPIAYSGGIDSSVLLDISFTLFCN 290 (318)
Q Consensus 252 a~~a~-~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~ 290 (318)
+.... +.|++|.+++ |...++..+.+++..
T Consensus 228 ae~~~~~~G~vd~vv~---------d~~~~~~~~~~~Ls~ 258 (527)
T 1vrg_A 228 AMVHNQKSGNAHFLAD---------NDEKAMSLVRTLLSY 258 (527)
T ss_dssp HHHHHHTSCCCSEEES---------SHHHHHHHHHHHHTT
T ss_pred HHHHhhcccceEEEec---------CHHHHHHHHHHHHHh
Confidence 77666 6999999997 444444444444443
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=307.70 Aligned_cols=198 Identities=15% Similarity=0.143 Sum_probs=168.5
Q ss_pred chhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhccccccc
Q psy14493 7 NFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHEL 86 (318)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d~~~el 86 (318)
.|++|.+.|.+.+++|+++.+....+|.++++|+|++ ||||+||||+.++|+++|.+++-. |..
T Consensus 23 ~~~~n~~~~~~~~~~l~~~~~~~~~gg~~~~~~~~~~---------GkltaRERI~~LlD~GSF~El~~~---~~~---- 86 (588)
T 3gf3_A 23 PNPENEQEIKAVESDIHESIKKALDAGITSEEKLNER---------GQLSAMQRINALIDPGTWCPLNSL---FNP---- 86 (588)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHCSSSCHHHHHHT---------TCCCHHHHHHHHSCTTCCEEESTT---CCT----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhc---------CCCCHHHHHHHHcCCCceEEcccc---ccc----
Confidence 4999999999999999999888766664579999999 999999999999999996553211 110
Q ss_pred ccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCc
Q psy14493 87 HGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPG 166 (318)
Q Consensus 87 ~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~ 166 (318)
.....++ ++||||+|+|+|++|+|+++|++ ++||++++.+++|++|++++|.++++|+|+|+||+|++++
T Consensus 87 ~~~~~~~--dgVVtG~G~I~Gr~V~V~a~D~t--------v~gGS~g~~~~~Ki~Ra~e~A~~~~lPvI~l~dSgGArl~ 156 (588)
T 3gf3_A 87 ENNKFGT--TNIVNGLGRVDGKWVYIVASDNK--------KMAGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCSGVEFP 156 (588)
T ss_dssp TCCTTSS--CSEEEEEEEETTEEEEEEEECTT--------SGGGCBCTTHHHHHHHHHHHHHHHTCCEEEEECCCCBCGG
T ss_pred cccCCCC--CcEEEEEEEECCEEEEEEEECCc--------ccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcCcc
Confidence 0111223 59999999999999999999999 4999999999999999999999999999999999999998
Q ss_pred hhHHh---hchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHH
Q psy14493 167 IDAEE---RGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGC 230 (318)
Q Consensus 167 ~~~e~---~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~ 230 (318)
++.+. +.+++.++.++..++..+||+|++|+|+|+|||+|...++|++++.++|.|++.||+..
T Consensus 157 ~qe~~~~~l~~~g~if~~~~~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI 223 (588)
T 3gf3_A 157 NQDKVYPNRRGGGTPFFRNSELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGIL 223 (588)
T ss_dssp GHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC--
T ss_pred cccccccchhhHHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhh
Confidence 66653 34567899999999998999999999999999999854567777888899999999853
|
| >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=267.49 Aligned_cols=215 Identities=13% Similarity=0.080 Sum_probs=173.5
Q ss_pred cCCCCHHHHHHhhcCCCCCchhh-HHhhh-ccccc----------ccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCC
Q psy14493 52 YSKLTPWQISQIARHPKRPYTLD-YIREI-FTDIH----------ELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGR 119 (318)
Q Consensus 52 ~~~ltareRi~~~~d~~~~~~~~-~i~~~-~d~~~----------el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~ 119 (318)
+.++|+||||+.++|+++|.+++ .+... ..+|. +.... .+.++++|||+|+|+|++|+|+++|++
T Consensus 52 ~~r~~arerI~~L~D~gsF~E~~~~~~~~~~~~f~d~~~y~~~l~~~~~~--t~~~~avvtG~g~i~G~~V~v~a~d~~- 128 (304)
T 2f9y_B 52 HMRMTARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKE--TGEKDALVVMKGTLYGMPVVAAAFEFA- 128 (304)
T ss_dssp BCCCCHHHHHHHHSCSSCCEECSCSCCCCCSSCCSSGGGTC------CCS--SCCSSSEEEEECEETTEECBEEEECTT-
T ss_pred CCCCCHHHHHHHHCCCCcEEEECCccccCCccccccccChHHHHHHHHhc--cCCCCcEEEEEEEECCEEEEEEEEcCc-
Confidence 46788999999899998876653 11100 00110 01100 123479999999999999999999999
Q ss_pred CccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 120 NVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 120 ~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
++||+++...++|+.|++++|.++++|+|+|+||+|++++++.+.++++.+++..+..++..++|+|++|+|+
T Consensus 129 -------~~ggslg~~~~~Ki~r~~e~A~~~~~PvI~l~~sGGarlqeg~~~l~~~~~i~~al~~~~~~~vP~IavV~G~ 201 (304)
T 2f9y_B 129 -------FMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDP 201 (304)
T ss_dssp -------STTTCBCTHHHHHHHHHHHHHHHHTCCEEEEEEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred -------cccCCCCHHHHHHHHHHHHHHHhCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 5999999999999999999999999999999999999999887777788899999999988889999999999
Q ss_pred Cchhhhhhh-ccccEEEEEcccEEEEeChhHHHHhhhccccchHHHHHHhcccHHHHHHcCCcceeecCccccCCCCchH
Q psy14493 200 GGSGGALAI-AVSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPIAYSGGIDSS 278 (318)
Q Consensus 200 ~~ggga~~~-~~~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~ 278 (318)
|+|||++.+ .+||+++|+++|+|+++||+...++++.... + ...++..+.++|+||.|++ +. |.+
T Consensus 202 ~~GGg~a~~a~~~D~via~~~A~i~v~Gp~~i~~~ig~~l~------~-~~~~Ae~~~~~Glvd~Vv~-~~------el~ 267 (304)
T 2f9y_B 202 TMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKLP------P-GFQRSEFLIEKGAIDMIVR-RP------EMR 267 (304)
T ss_dssp EEHHHHTTGGGCCSEEEECTTCBEESSCHHHHHHHHTSCCC------T-TTTBHHHHGGGTCCSEECC-HH------HHH
T ss_pred CccHHHHHHHhcCCEEEEeCCcEEEeecHHHHHHHhCccCC------c-ccCCHHHHHhcCCccEEeC-cH------HHH
Confidence 999997764 4699999999999999999999998876532 1 1368999999999999997 33 666
Q ss_pred HHHHHHHHHhhc
Q psy14493 279 VLLDISFTLFCN 290 (318)
Q Consensus 279 ~ll~~~~~l~~~ 290 (318)
..+..++..+..
T Consensus 268 ~~l~~ll~~l~~ 279 (304)
T 2f9y_B 268 LKLASILAKLMN 279 (304)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhc
Confidence 666666665543
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=292.79 Aligned_cols=208 Identities=18% Similarity=0.207 Sum_probs=174.5
Q ss_pred CCCCchh-hHHh-------------hhcc--cccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCC------------
Q psy14493 67 PKRPYTL-DYIR-------------EIFT--DIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKG------------ 118 (318)
Q Consensus 67 ~~~~~~~-~~i~-------------~~~d--~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~------------ 118 (318)
+++|||+ ++|+ .+|| +|.|++++ |+ +++|||+|||+|+||+||||+++
T Consensus 374 ~~~pyD~r~vI~g~~~~~~~~~~~~~l~D~g~F~E~~~~--~g--~~iVtG~ARl~G~pVGVIAn~~~~v~~~~padP~~ 449 (793)
T 2x24_A 374 SRGPYDPRWLLAGRPHPTLKGSWQSGFFDQGSFKEIMVP--WA--QTVVTGRARLGGIPVGVIAAETRTVELVVPADPAN 449 (793)
T ss_dssp CSSCCCHHHHHHCEECSSSSSCEECCSSCTTCCEEESCS--SC--TTEEEEEEEETTEEEEEEEECCSCEEEEECCCTTS
T ss_pred CCCCCCHHHHHhcccccccccchhhccccCcceEEecCc--cc--CcEEEEEEEECCEEEEEEEEccccccccccCCccc
Confidence 5789996 7898 9999 59999966 88 79999999999999999999844
Q ss_pred CCccchhh-ccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEE-
Q psy14493 119 RNVNERII-RNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTI- 196 (318)
Q Consensus 119 ~~~~~~~~-~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV- 196 (318)
.+++++.. ..||++++++++|++||+++|+++++|||+|+||+||.+|..+|..|+.+++++++.+++.++||+|++|
T Consensus 450 ~~~~e~~~~~~gG~l~~~~a~KaarfI~~cd~f~iPlv~LvDtpGf~~G~~aE~~Gi~~~gAkll~A~a~a~VP~itvI~ 529 (793)
T 2x24_A 450 LDSEAKIIQQAGQVWFPDSAYKTAQAIKDFNREKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLIYIP 529 (793)
T ss_dssp TTCCCEEEEECTTEECHHHHHHHHHHHHHHHTTTCCEEEECCBCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEEC
T ss_pred cchhhhhhhhcCCcccHHHHHHHHHHHHHhccCCCCEEEEecCCCCCCCHHHHHhhHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 12333333 3479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCCCchhhhhhhc----cccE--EEEEcccEEEEeChhHHHHhhhcccc-c-h------------------H----HHH
Q psy14493 197 -IGEGGSGGALAIA----VSDI--TLMLQYAIYSVISPEGCASILWKTSK-R-A------------------S----DAA 245 (318)
Q Consensus 197 -~G~~~ggga~~~~----~~D~--via~~~A~i~v~gP~~~a~il~~~~~-~-~------------------~----~a~ 245 (318)
.|+++| |+|.+. .+|+ ++|||+|+++||||+++++|+|++.+ . . + +..
T Consensus 530 r~Ge~~G-Ga~~~~~~~~~~d~~ev~Awp~A~~~VM~pEgaa~Il~r~~~l~~~m~~~~~~~~~l~~~~~~~~~~~~~~~ 608 (793)
T 2x24_A 530 PYAEVRG-GSWAVMDTSINPLCIEMYADRESRASVLEPEGTVEIKYQKKDLVKTIRRLDPISKKLVEQLGVSELSDTDRK 608 (793)
T ss_dssp TTCEEEH-HHHHTTCGGGSTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHHCSSCC-----------------
T ss_pred cCCcccc-hhHHhhhcccCccHHHHhhhccCEEEecCHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHhcCCCCCHHHHH
Confidence 788755 555543 3788 89999999999999999999998751 0 0 0 000
Q ss_pred HH-------h-----------------cccHHHHHHcCCcceeecCccccCCCCchHHHHHHHHH
Q psy14493 246 EA-------L-----------------GLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLDISFT 286 (318)
Q Consensus 246 e~-------~-----------------~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~ 286 (318)
+. . ..+|+.+++.|+||+||+ |. |||..|...++
T Consensus 609 ~~~~~i~~re~~~~p~y~~~a~~y~~~~~~p~r~a~~G~Id~VId-p~------~TR~~l~~~L~ 666 (793)
T 2x24_A 609 ELEGQLKAREDLLLPMYHQVALHFADLHDTAGRMLEKGVIYDILE-WK------TARSFLYWRLR 666 (793)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHTTSSSEEEC-HH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHhcCCHHHHHHcCcCccccC-HH------HHHHHHHHHHH
Confidence 00 0 138899999999999999 77 99999987777
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=276.01 Aligned_cols=209 Identities=19% Similarity=0.204 Sum_probs=174.2
Q ss_pred CCCCchh-hHHhh----------hcc--cccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCC------------Cc
Q psy14493 67 PKRPYTL-DYIRE----------IFT--DIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGR------------NV 121 (318)
Q Consensus 67 ~~~~~~~-~~i~~----------~~d--~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~------------~~ 121 (318)
+++|||+ ++|+. +|| +|.|++++ |+ +++|||+|||+|+||+||||++.. ++
T Consensus 362 ~~~pYD~R~vIa~~~d~~~~~~givD~~sF~E~~~~--~a--~~iVtG~ARl~G~pVGVIAn~~~~~~~~~padP~~p~~ 437 (758)
T 3k8x_A 362 NDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSG--WA--KGVVVGRARLGGIPLGVIGVETRTVENLIPADPANPNS 437 (758)
T ss_dssp SSSCCCHHHHHHCEEETTEEECCSSCTTCCEEESTT--SC--TTEEEEEEEETTEEEEEEEECCSCEEEEECCCTTSTTC
T ss_pred CCCCCCHHHHHhcccccccccceeecCCceEEEcCC--cc--ccEEEEEEEECCEEEEEEEEccccccccCcccccCcch
Confidence 5689996 78988 899 59999976 88 799999999999999999997653 12
Q ss_pred cch-hhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEc--
Q psy14493 122 NER-IIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTII-- 197 (318)
Q Consensus 122 ~~~-~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~-- 197 (318)
+++ ....||++++++++|++||+++|++ +++|||+|+||+||.+|..+|..|+.+++++++.+++.++||+|++|+
T Consensus 438 ~e~~~~~~gG~l~pe~a~KaArfI~lcd~~f~iPLv~LvDtpGf~~G~~aE~~Gi~k~gAkll~A~a~a~VP~itVI~Rk 517 (758)
T 3k8x_A 438 AETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPT 517 (758)
T ss_dssp CCEEEEECTTEECHHHHHHHHHHHHHHHHTSCCCEEECCCCCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEECTT
T ss_pred hhhHHhhcCCCCCHHHHHHHHHHHHHhhhccCCCEEEEecCCCCCCCHHHHHccHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 223 2245799999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhc---cccE--EEEEcccEEEEeChhHHHHhhhcccc-------------c----hHH----------HH
Q psy14493 198 GEGGSGGALAIA---VSDI--TLMLQYAIYSVISPEGCASILWKTSK-------------R----ASD----------AA 245 (318)
Q Consensus 198 G~~~ggga~~~~---~~D~--via~~~A~i~v~gP~~~a~il~~~~~-------------~----~~~----------a~ 245 (318)
|+++||+.++++ .+|+ ++|||+|+++||||+++++|+|++.. . ..+ +.
T Consensus 518 Ge~~GGA~~am~~~~~ad~~~v~Awp~A~isVM~pEgaa~Il~r~~~~~~~m~r~d~~~~~l~~~~~~~~~~~~~~~~~~ 597 (758)
T 3k8x_A 518 GELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRLDDKYRELRSQLSNKSLAPEVHQQIS 597 (758)
T ss_dssp CEEETHHHHTTCGGGSTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHHCSCCCCC------------------
T ss_pred CccchHHHHHhCcccCCCHHHHhcCCCCEEEccCHHHHHHHHhcchHHHHHHHhcCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 888877665665 2777 99999999999999999999998653 0 000 00
Q ss_pred ------H-Hh--------------cccHHHHHHcCCcceeecCccccCCCCchHHHHHHHHH
Q psy14493 246 ------E-AL--------------GLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLDISFT 286 (318)
Q Consensus 246 ------e-~~--------------~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~ 286 (318)
| .+ --++..+.+.|.|++|+++. ++|..+...++
T Consensus 598 ~~~~~re~~l~p~y~qva~~fadlHd~~~rm~~~g~i~~~~~w~-------~~r~~f~~rlr 652 (758)
T 3k8x_A 598 KQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWT-------EARRFFFWRLR 652 (758)
T ss_dssp ----------HHHHHHHHHHHHHTTSBHHHHHHHTCSSEEECGG-------GHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCcHHHHHhhCccccccchH-------HhHHHHHHHHH
Confidence 0 00 12789999999999999986 78888765544
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-25 Score=229.24 Aligned_cols=186 Identities=12% Similarity=0.099 Sum_probs=140.8
Q ss_pred ccccccCCccCCCCcEEEEEE------EEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEE
Q psy14493 83 IHELHGDRNYGDDLSIIGVLA------RINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFT 156 (318)
Q Consensus 83 ~~el~~~~~~~d~~~vVtG~g------~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~ 156 (318)
|.|+...... ++.++|+|++ +++||+|+|++||++ +++|++++..++|+.|++++|.++++|+|+
T Consensus 91 f~E~~~~~~~-~~~GmV~g~~~~~t~~~~~Gr~vvVianD~t--------~~gGS~g~~~~~K~~ra~elA~~~glP~I~ 161 (793)
T 2x24_A 91 LVEMNRLPGG-NEVGMVAFKMTLKTLEYPEGRDIILISNDIT--------FRIGSFGPGEDLLYLRASELARAEGIPRVY 161 (793)
T ss_dssp EECCCCCTTC-CSSSEEEEEEEECCSSCTTCEEEEEEEECSS--------GGGGCBCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEeCCccCC-CCCCeeeeeecccCccccCCeEEEEEEECCc--------ccCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 4444433222 3469999998 669999999999999 599999999999999999999999999999
Q ss_pred EecCCCCCCchhHHhh---------------ch---------HHH-------------------------------HHHH
Q psy14493 157 FIDTPGAFPGIDAEER---------------GQ---------SEA-------------------------------IGHS 181 (318)
Q Consensus 157 lvDs~Ga~~~~~~e~~---------------g~---------~~~-------------------------------~~~~ 181 (318)
|+||+|++++.+.+.. |. +.. ++..
T Consensus 162 l~dsgGARig~~ee~~sl~qma~~d~~~p~~G~~~~yl~~~~~~~~sa~~~v~~~~~~~~ge~~~~i~~i~g~~~~i~v~ 241 (793)
T 2x24_A 162 LAANSGARIGLAEEIKHMFQVAWVDPEDPHKGIKYLYLTPQDYTRISSLNSVHCKHVEEDGESRYVITDIIGKEEGLGVE 241 (793)
T ss_dssp EECCCCBCCCCCHHHHTTCEEEESSSSCSTTCEEEEEECHHHHHHTTTSCSEEEEEEEETTEEEEEEEEECCSSSSSSTH
T ss_pred EEeCCCcCccchhhhhhhhcccccCccCcccchheeccchhHHHhhhccccccccccccccccceeeeccccccchHHHH
Confidence 9999999997554431 11 011 1222
Q ss_pred HHHHhc----------CCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhcccc-chHHHHHHhcc
Q psy14493 182 IYVMSK----------LKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSK-RASDAAEALGL 250 (318)
Q Consensus 182 ~~~~s~----------~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~-~~~~a~e~~~~ 250 (318)
....|+ ..+|+|++|+|+|+|||||.+.++|++||++++.|+++||+....++.++.- ..++. .
T Consensus 242 ~l~~SG~iag~~s~a~~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~ltGp~vi~~~~Ge~vy~s~e~L-----G 316 (793)
T 2x24_A 242 NLRGSGMIAGETSQDYDEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIILTGATALNKVLGRDVYTSNNQL-----G 316 (793)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEESSCHHHHHHHHSSCCCSCHHHH-----H
T ss_pred HHHhccchhhccccccCCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEecCHHHHHHhcCCcccCChhhh-----c
Confidence 222332 1599999999999999999999999999999999999999998877765531 22221 3
Q ss_pred cHHHHHHcCCcceeecCccccCCCCchHHHHHHHHHHhhcc
Q psy14493 251 TADKLKSIGLINKIIKEPIAYSGGIDSSVLLDISFTLFCNY 291 (318)
Q Consensus 251 ~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~~ 291 (318)
++....+.|++|.+++ |....+..+.+++...
T Consensus 317 Ga~v~~~~Gv~d~vv~---------dd~ea~~~ir~~Lsyl 348 (793)
T 2x24_A 317 GVQIMHHNGVSHVTVP---------DDFEGVCTILEWLSYM 348 (793)
T ss_dssp SHHHHTTTTSCSEEES---------SHHHHHHHHHHHHTTS
T ss_pred cHHHHHhcCceEEEeC---------CHHHHHHHHHHHHHhc
Confidence 4555778999999997 4455555556655543
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-22 Score=201.83 Aligned_cols=175 Identities=10% Similarity=0.087 Sum_probs=136.7
Q ss_pred CCCcEEEEEEEE------cCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCch
Q psy14493 94 DDLSIIGVLARI------NGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGI 167 (318)
Q Consensus 94 d~~~vVtG~g~i------~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~ 167 (318)
+|.++|+|.+++ +|++|+|+++|++ ++||++++.+++|+.|++++|.++++|+|+|+||+|+++++
T Consensus 85 nd~gmV~g~~~l~t~e~i~G~~vvV~a~D~t--------~~gGS~G~~~~eKi~Ra~e~A~~~~lPvI~l~dSGGARmqe 156 (758)
T 3k8x_A 85 NAIGMVAFKITVKTPEYPRGRQFVVVANDIT--------FKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGM 156 (758)
T ss_dssp CSSSEEEEEEEECCSSCTTCEEEEEEEECTT--------SGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCCCC
T ss_pred CCceEEEEEEEECCccccCCeEEEEEEECCc--------cccccCcHHHHHHHHHHHHHHHHcCCCEEEEecCCCcCccc
Confidence 458999999998 9999999999999 59999999999999999999999999999999999999997
Q ss_pred hHHhhc------------------------hHHHH---------------------------------------------
Q psy14493 168 DAEERG------------------------QSEAI--------------------------------------------- 178 (318)
Q Consensus 168 ~~e~~g------------------------~~~~~--------------------------------------------- 178 (318)
+.|.+. .+..+
T Consensus 157 ~~ev~~~~~v~w~d~~~~~~G~~~ly~~q~~~~~ls~~g~~~~vi~~~~~~~ge~r~~I~~I~G~~~~~gv~~l~~sG~i 236 (758)
T 3k8x_A 157 AEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGLGVECLRGSGLI 236 (758)
T ss_dssp CGGGTTTCEEEESSTTCGGGCEEEEEECHHHHHHHHHTTCGGGEEEEEEEETTEEEEEEEEECCSSSCSSHHHHHHHHHH
T ss_pred cchhccccccccccccchhcccceeccCHHHHHHhhhccccccceeeeeccCCceeeeEeeeeccccchhhhhccccchh
Confidence 775321 01111
Q ss_pred HHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhcccc-chHHHHHHhcccHHHHHH
Q psy14493 179 GHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSK-RASDAAEALGLTADKLKS 257 (318)
Q Consensus 179 ~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~-~~~~a~e~~~~~a~~a~~ 257 (318)
+........ .+|+|++|+|+|+|||||.++++|++||++++.|+++||.....++..... ..++. .++....+
T Consensus 237 ag~~s~a~~-~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~ifltGP~vIk~~tGeeV~~s~eeL-----GGA~vh~~ 310 (758)
T 3k8x_A 237 AGATSRAYH-DIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPAINKMLGREVYTSNLQL-----GGTQIMYN 310 (758)
T ss_dssp HHHHHHHHT-TSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEESSCHHHHHHHHTSCCCSCTHHH-----HSHHHHTT
T ss_pred hhhhhhhhc-CCCEEEEEccCCchHHHHHHhhCCEEEEECCceEEEeCHHHHHHHhCCccccCchhc-----chhhHHHh
Confidence 111222222 489999999999999999999999999999999999999987766654321 23332 34555567
Q ss_pred cCCcceeecCccccCCCCchHHHHHHHHHHhhcc
Q psy14493 258 IGLINKIIKEPIAYSGGIDSSVLLDISFTLFCNY 291 (318)
Q Consensus 258 ~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~~ 291 (318)
.|++|-+.+ |...-+....+++...
T Consensus 311 sGvad~va~---------dd~eal~~ir~lLsyL 335 (758)
T 3k8x_A 311 NGVSHLTAV---------DDLAGVEKIVEWMSYV 335 (758)
T ss_dssp TTSSSEEES---------SHHHHHHHHHHHHTTS
T ss_pred cCCeeEEec---------CHHHHHHHHHHHHhhC
Confidence 999999996 4444555555665543
|
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-09 Score=98.05 Aligned_cols=139 Identities=18% Similarity=0.246 Sum_probs=105.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCCc-hhHHhh--------chHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFPG-IDAEER--------GQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~~-~~~e~~--------g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
...+++......+..+++.+++ ..+-+|.|.-.+.++.. ...... .........+..+..+++|+|++|.
T Consensus 20 ~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 99 (254)
T 3hrx_A 20 KLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVN 99 (254)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEEC
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchhhHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 4468999999999999987765 46788888776655542 111111 1123455667788889999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|+|||...+..||++|+.++++|++ +.|..+.+...++..+...+.+.+ .+++.++.+.|+|+++++
T Consensus 100 G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~ 178 (254)
T 3hrx_A 100 GVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVP 178 (254)
T ss_dssp SEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEEC
T ss_pred CEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhhcCcccCHHHHHHCCCeEEecC
Confidence 999999999998999999999999887 345555666666656666666654 589999999999999997
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.10 E-value=5.2e-09 Score=96.95 Aligned_cols=138 Identities=21% Similarity=0.290 Sum_probs=101.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-chhHHhhc-------------hHHHHHHHHHHHhcCCCCEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP-GIDAEERG-------------QSEAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~-~~~~e~~g-------------~~~~~~~~~~~~s~~~vP~Ia 194 (318)
..+++......+..+++.++....-+|.|.-.++++. |.....+. ........+..+..+++|+|+
T Consensus 45 ~Nal~~~m~~~L~~al~~~~~d~~r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 124 (291)
T 2fbm_A 45 KNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVV 124 (291)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHSSCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccCCcCHHHHHhcccccchhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 4789999999999999888766556777776554444 21111110 011233455667788999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
+|.|.|+|||...+..||++|+.++++|++ +.|..+.+..+++..+...+.+.+ .+++.++.+.|+||+|
T Consensus 125 aV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~el~ltg~~i~A~eA~~~GLV~~v 204 (291)
T 2fbm_A 125 SVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQV 204 (291)
T ss_dssp EECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTSCCEEEHHHHHHTTSCSEE
T ss_pred EECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHhHHHHHHHHHcCCccCHHHHHHCCCccee
Confidence 999999999999988999999999999887 345555555555555555566654 4899999999999999
Q ss_pred ec
Q psy14493 265 IK 266 (318)
Q Consensus 265 i~ 266 (318)
++
T Consensus 205 v~ 206 (291)
T 2fbm_A 205 FL 206 (291)
T ss_dssp EC
T ss_pred cC
Confidence 96
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-09 Score=97.02 Aligned_cols=153 Identities=15% Similarity=0.111 Sum_probs=108.6
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCC-C-----chhHH-------
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAF-P-----GIDAE------- 170 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~-~-----~~~~e------- 170 (318)
.+|.-..|.-|.|. ...+++....+.+.++++.+.+ ..+-+|.|.-.++++ . .+-..
T Consensus 10 ~~~~v~~itlnrp~---------~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~ 80 (263)
T 3lke_A 10 IQNDALYITLDYPE---------KKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSD 80 (263)
T ss_dssp ECSSEEEEEECCGG---------GTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSS
T ss_pred EECCEEEEEECCCC---------CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCH
Confidence 34444445555553 4478999999999999988765 457777777655544 2 11111
Q ss_pred --hhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchH
Q psy14493 171 --ERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRAS 242 (318)
Q Consensus 171 --~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~ 242 (318)
...........+..+..+++|+|++|.|.|.|||...+..||++|+.++++|++ +.|..+.....++..+..
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~ 160 (263)
T 3lke_A 81 VRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYE 160 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHH
Confidence 001123345567778889999999999999999999988899999999999887 335555555555555555
Q ss_pred HHHHHh----cccHHHHHHcCCcceeec
Q psy14493 243 DAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 243 ~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.+.+.+ .+++.++.+.|+||+|++
T Consensus 161 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~ 188 (263)
T 3lke_A 161 QTMNLLLEGKLFTSEEALRLGLIQEICE 188 (263)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSSSEEES
T ss_pred HHHHHHHhCCCcCHHHHHHcCCCcEecC
Confidence 555554 489999999999999996
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.09 E-value=9.8e-10 Score=100.47 Aligned_cols=153 Identities=13% Similarity=0.073 Sum_probs=108.3
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-----chhHHhhchHHHHH
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP-----GIDAEERGQSEAIG 179 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~-----~~~~e~~g~~~~~~ 179 (318)
.+|.-..|.-|.|. ...+++....+.+.++++.+++..+-+|.|.-.++++. ..............
T Consensus 27 ~~~~v~~itlnrP~---------~~Nal~~~~~~~L~~al~~~~~d~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~ 97 (264)
T 3he2_A 27 QAEAVLTIELQRPE---------RRNALNSQLVEELTQAIRKAGDGSARAIVLTGQGTAFCAGADLSGDAFAADYPDRLI 97 (264)
T ss_dssp EETTEEEEEECCGG---------GTTCBCHHHHHHHHHHHHCC---CCSEEEEEESSSCSBCCBCCTTCTTGGGHHHHHH
T ss_pred EECCEEEEEECCCC---------CCCCCCHHHHHHHHHHHHHHhhCCceEEEEECCCCCccCCcCCccchhhHHHHHHHH
Confidence 44544445555554 45789999999999999877655788888876554443 21111112234455
Q ss_pred HHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----c
Q psy14493 180 HSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----G 249 (318)
Q Consensus 180 ~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~ 249 (318)
..+..+..+++|+|+.|.|.|+|||...+..||++|+.++++|++ +.|..+.....++..+...+.+.+ .
T Consensus 98 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~ 177 (264)
T 3he2_A 98 ELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEK 177 (264)
T ss_dssp HHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHHHHHHCCC
T ss_pred HHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHHHHHHHHHcCCC
Confidence 666778888999999999999999999988899999999999886 334444544555555555555554 5
Q ss_pred ccHHHHHHcCCcceeec
Q psy14493 250 LTADKLKSIGLINKIIK 266 (318)
Q Consensus 250 ~~a~~a~~~G~vD~ii~ 266 (318)
+++.++.+.|+||+|++
T Consensus 178 i~A~eA~~~GLV~~v~~ 194 (264)
T 3he2_A 178 LTAEIALHTGMANRIGT 194 (264)
T ss_dssp EEHHHHHHHTSCSEECC
T ss_pred ccHHHHHHCCCeEEEec
Confidence 89999999999999985
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.2e-09 Score=95.30 Aligned_cols=138 Identities=15% Similarity=0.094 Sum_probs=101.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEec-CCCCCC-chhHHhh----------chHHHHHHHHHHHhcCCCCEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFID-TPGAFP-GIDAEER----------GQSEAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvD-s~Ga~~-~~~~e~~----------g~~~~~~~~~~~~s~~~vP~Ia 194 (318)
...+++....+.+.++++.+.+. .+-+|.|.- .++++. |-....+ .........+..+..+++|+|+
T Consensus 20 ~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIA 99 (250)
T 2a7k_A 20 KHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIA 99 (250)
T ss_dssp TTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 34689999999999999887764 678888876 554433 2111111 0112244556678888999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
+|.|.|.|||......||++||.++++|++ +.|..+.. .+++..+...+.+.+ .+++.++.+.|+||++
T Consensus 100 av~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v 178 (250)
T 2a7k_A 100 AVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQV 178 (250)
T ss_dssp EECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEE
T ss_pred EECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHHHHcCCcccHHHHHHcCCccee
Confidence 999999999999988999999999999887 34555555 555555555555554 5899999999999999
Q ss_pred ec
Q psy14493 265 IK 266 (318)
Q Consensus 265 i~ 266 (318)
++
T Consensus 179 v~ 180 (250)
T 2a7k_A 179 VE 180 (250)
T ss_dssp EC
T ss_pred cC
Confidence 96
|
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.7e-09 Score=96.37 Aligned_cols=154 Identities=13% Similarity=0.152 Sum_probs=109.1
Q ss_pred EEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-----chhHH-hh----
Q psy14493 104 RINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-----GIDAE-ER---- 172 (318)
Q Consensus 104 ~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-----~~~~e-~~---- 172 (318)
.+++.-..|--|.|. ...+++....+.+..+++.+++. .+-+|.|.-.+.++. .+-.. ..
T Consensus 20 ~~~~gVa~itlnRP~---------~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~ 90 (274)
T 4fzw_C 20 HVEKGVMTLTLNRPE---------RLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAP 90 (274)
T ss_dssp EEETTEEEEEECCTT---------TTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CC
T ss_pred EEECCEEEEEEcCcC---------ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccch
Confidence 344443444456665 44689999999999999887664 578888876554443 21100 00
Q ss_pred ----chHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchH
Q psy14493 173 ----GQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRAS 242 (318)
Q Consensus 173 ----g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~ 242 (318)
.........+..+..+++|+|+.|.|.|+|||...+..||++|+.++++|++ +.|..+....+++..+..
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 170 (274)
T 4fzw_C 91 DLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRA 170 (274)
T ss_dssp CHHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHH
Confidence 0011223455667788999999999999999999988999999999999887 345555666666656655
Q ss_pred HHHHHh----cccHHHHHHcCCcceeec
Q psy14493 243 DAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 243 ~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.+.+.+ .+++.++++.|+||+|++
T Consensus 171 ~A~~llltg~~i~A~eA~~~GLv~~vv~ 198 (274)
T 4fzw_C 171 RAMGLALLGNQLSAEQAHEWGMIWQVVD 198 (274)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTSSSEEEC
T ss_pred HHHHHHHhCCcCCHHHHHHCCCceEEeC
Confidence 666654 589999999999999997
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.3e-09 Score=97.54 Aligned_cols=139 Identities=16% Similarity=0.172 Sum_probs=104.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh-----------chHHHHHHHHHHHhcCCCCEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER-----------GQSEAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~-----------g~~~~~~~~~~~~s~~~vP~Ia 194 (318)
...+++......+..+++.+.+. .+-+|.|.-.++++. |.....+ .........+..+..+++|+|+
T Consensus 48 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 127 (276)
T 3rrv_A 48 SLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVA 127 (276)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 45789999999999999887654 688888876665554 2111111 1122344566778888999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
+|.|.|+|||...+..||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||+|
T Consensus 128 av~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLv~~v 207 (276)
T 3rrv_A 128 AVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHV 207 (276)
T ss_dssp EECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred EECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCHHHH
Confidence 999999999999988999999999999886 345555555556666666666654 4899999999999999
Q ss_pred ec
Q psy14493 265 IK 266 (318)
Q Consensus 265 i~ 266 (318)
++
T Consensus 208 v~ 209 (276)
T 3rrv_A 208 AD 209 (276)
T ss_dssp ES
T ss_pred HH
Confidence 93
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=99.07 E-value=5.4e-09 Score=95.18 Aligned_cols=139 Identities=22% Similarity=0.306 Sum_probs=101.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-chhHHhh-------------chHHHHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP-GIDAEER-------------GQSEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~-~~~~e~~-------------g~~~~~~~~~~~~s~~~vP~I 193 (318)
...+++......+.++++.+++...-+|.|.-.++++. |-....+ .........+..+..+++|+|
T Consensus 26 ~~Nal~~~~~~~L~~al~~~~~d~~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 105 (261)
T 2gtr_A 26 ENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPII 105 (261)
T ss_dssp STTEECHHHHHHHHHHHHHHHHSSCSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCEEEEEecCCCccccccCchhhhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 34788999999999999887766556777776655544 2111111 001123445566778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|.|||...+..||++|+.++++|++ +.|..+.+..+++..+...+.+.+ .+++.++.+.|+||+
T Consensus 106 Aav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~ 185 (261)
T 2gtr_A 106 VAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQ 185 (261)
T ss_dssp EEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSE
T ss_pred EEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccc
Confidence 9999999999999988899999999999887 345555555555555555555554 589999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 186 vv~ 188 (261)
T 2gtr_A 186 VFW 188 (261)
T ss_dssp EEC
T ss_pred ccC
Confidence 996
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-09 Score=98.74 Aligned_cols=153 Identities=20% Similarity=0.243 Sum_probs=110.0
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh----------
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER---------- 172 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~---------- 172 (318)
.+|.-..|.-|.|. ...+++......+.++++.+++. .+-+|.|.-.++++. |.....+
T Consensus 11 ~~~~v~~itlnrP~---------~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (266)
T 3fdu_A 11 LEGGVLTLAINRPE---------AKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAG 81 (266)
T ss_dssp EETTEEEEEECCGG---------GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCS
T ss_pred EECCEEEEEECCCC---------ccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchh
Confidence 34444444445554 45789999999999999887654 577888876655544 2111111
Q ss_pred -chHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHH
Q psy14493 173 -GQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAA 245 (318)
Q Consensus 173 -g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~ 245 (318)
.........+..+..+++|+|++|.|.|.|||...+..||++|+.++++|++ +.|..+.+...++..+...+.
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~ 161 (266)
T 3fdu_A 82 PAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAA 161 (266)
T ss_dssp CGGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHHHHH
Confidence 1122345666778888999999999999999999988999999999999887 345555555555555555555
Q ss_pred HHh----cccHHHHHHcCCcceeec
Q psy14493 246 EAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 246 e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+.+ .+++.++.+.|+||++++
T Consensus 162 ~l~ltg~~i~A~eA~~~GLv~~vv~ 186 (266)
T 3fdu_A 162 ELLFTAKKFNAETALQAGLVNEIVE 186 (266)
T ss_dssp HHHHHCCEECHHHHHHTTSCSEECS
T ss_pred HHHHhCCCcCHHHHHHCCCHHHHHH
Confidence 554 489999999999999996
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.07 E-value=6e-09 Score=94.97 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=107.1
Q ss_pred cCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCCc-hhHHh---------hch
Q psy14493 106 NGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFPG-IDAEE---------RGQ 174 (318)
Q Consensus 106 ~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~~-~~~e~---------~g~ 174 (318)
+|.-..|.-|.|. . .+++......+.++++.+++. .+-+|.|.-.++++.. -.... ...
T Consensus 13 ~~~v~~itlnrp~---------~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (261)
T 3pea_A 13 EDHIAVATLNHAP---------A-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATE 82 (261)
T ss_dssp ETTEEEEEECCTT---------T-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHH
T ss_pred ECCEEEEEECCCC---------C-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHH
Confidence 4444444455554 4 889999999999999887654 5788888766554441 11110 001
Q ss_pred H-HHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHH
Q psy14493 175 S-EAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEA 247 (318)
Q Consensus 175 ~-~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~ 247 (318)
+ ......+..+..+++|+|+.|.|.|+|||...+..||++|+.++++|++ +.|..+....+++..+...+.+.
T Consensus 83 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l 162 (261)
T 3pea_A 83 LAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEM 162 (261)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHH
Confidence 1 1223356678889999999999999999999988899999999999886 34544444455555555555555
Q ss_pred h----cccHHHHHHcCCcceeec
Q psy14493 248 L----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 248 ~----~~~a~~a~~~G~vD~ii~ 266 (318)
+ .+++.++.+.|+||++++
T Consensus 163 ~ltg~~~~a~eA~~~GLv~~vv~ 185 (261)
T 3pea_A 163 MLTSTPITGAEALKWGLVNGVFA 185 (261)
T ss_dssp HHHCCCEEHHHHHHHTSSSEEEC
T ss_pred HHcCCCCCHHHHHHCCCccEecC
Confidence 4 489999999999999997
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.06 E-value=7.8e-09 Score=95.17 Aligned_cols=138 Identities=19% Similarity=0.224 Sum_probs=99.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCC-----CCchhHH----h-hc----hHHHHHHHHHHHhcCCCCE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGA-----FPGIDAE----E-RG----QSEAIGHSIYVMSKLKVPL 192 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga-----~~~~~~e----~-~g----~~~~~~~~~~~~s~~~vP~ 192 (318)
...+++....+.+.++++.+.+ ..+ +|.|.-.+++ .+.+-.. . .. ........+..+..+++|+
T Consensus 46 ~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 124 (280)
T 2f6q_A 46 KKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPL 124 (280)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCE
T ss_pred cCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 4478999999999999988765 467 8777764433 3322100 0 00 0122344556778889999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcc
Q psy14493 193 ISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLIN 262 (318)
Q Consensus 193 IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD 262 (318)
|++|.|.|.|||...+..||++|+.++++|++ +.|..+.+...++..+...+.+.+ .+++.++.+.|+||
T Consensus 125 IAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~ 204 (280)
T 2f6q_A 125 IAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVT 204 (280)
T ss_dssp EEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCS
T ss_pred EEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcc
Confidence 99999999999999988899999999999887 345555555555555555555554 47999999999999
Q ss_pred eeec
Q psy14493 263 KIIK 266 (318)
Q Consensus 263 ~ii~ 266 (318)
++++
T Consensus 205 ~vv~ 208 (280)
T 2f6q_A 205 EVFP 208 (280)
T ss_dssp EEEC
T ss_pred eEEC
Confidence 9996
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-09 Score=94.01 Aligned_cols=136 Identities=15% Similarity=0.157 Sum_probs=98.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-chhHH---------hhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP-GIDAE---------ERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~-~~~~e---------~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
.+++....+.+.++++.+++..+-+|.|.-.+.++. |-... ...........+..+..+++|+|++|.|.
T Consensus 26 Nal~~~~~~~L~~al~~~~~d~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 105 (233)
T 3r6h_A 26 NVLGPTMQQALNEAIDAADRDNVGALVIAGNHRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGH 105 (233)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTCSEEEEECCSSEEECCSCHHHHC---CHHHHHHHHHHHHHHHHHHTCSSCEEEEECSE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCCCccCCcChHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCc
Confidence 789999999999999888766677777765543332 11111 11122344566777888999999999999
Q ss_pred CchhhhhhhccccEEEEEcccEEEE------e-ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 200 GGSGGALAIAVSDITLMLQYAIYSV------I-SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 200 ~~ggga~~~~~~D~via~~~A~i~v------~-gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|||......||++|+.++++|++ + .|.++...+ ....+...+.+.+ .+++.++.+.|+||++++
T Consensus 106 a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l-~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 182 (233)
T 3r6h_A 106 AIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVL-KLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISL 182 (233)
T ss_dssp EETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHH-HHHSCHHHHHHHHHSCCEECHHHHHHHTSCSEECC
T ss_pred chHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHH-HHHhCHHHHHHHHHcCCcCCHHHHHHcCCCcEeeC
Confidence 9999999988899999999999887 2 344444333 3334444555544 489999999999999996
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-09 Score=96.13 Aligned_cols=139 Identities=19% Similarity=0.196 Sum_probs=101.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhhc----------------h----HHHHHHHHHHH
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEERG----------------Q----SEAIGHSIYVM 185 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~g----------------~----~~~~~~~~~~~ 185 (318)
...+++......+.++++.+++. .+-+|.|.-.++++. |-....+. . .......+..+
T Consensus 24 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (275)
T 1dci_A 24 KRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVI 103 (275)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 45789999999999999887764 577888876554443 11111100 0 11223445567
Q ss_pred hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccch-HHHHHHh----cccHHH
Q psy14493 186 SKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRA-SDAAEAL----GLTADK 254 (318)
Q Consensus 186 s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~-~~a~e~~----~~~a~~ 254 (318)
..+++|+|++|.|.|+|||...+..||++||.++++|++ +.|..+.+..+++..+. ..+.+.+ .+++.+
T Consensus 104 ~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~~A~~l~ltg~~~~a~e 183 (275)
T 1dci_A 104 EKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADE 183 (275)
T ss_dssp HHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHH
T ss_pred HhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCcHHHHHHHHHcCCCCCHHH
Confidence 788999999999999999999988899999999999887 34555555555665665 5565654 489999
Q ss_pred HHHcCCcceeec
Q psy14493 255 LKSIGLINKIIK 266 (318)
Q Consensus 255 a~~~G~vD~ii~ 266 (318)
+.+.|+||++++
T Consensus 184 A~~~GLv~~vv~ 195 (275)
T 1dci_A 184 ALDSGLVSRVFP 195 (275)
T ss_dssp HHHHTSSSEEES
T ss_pred HHHcCCcceecC
Confidence 999999999996
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.1e-09 Score=95.83 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=109.5
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh---------c
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER---------G 173 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~---------g 173 (318)
.+|.-..|.-|.|. . .+++......+.++++.+.+ ..+-+|.|.-.++++. |.....+ .
T Consensus 30 ~~~~Va~ItlnrP~---------~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~ 99 (277)
T 4di1_A 30 ADQGLATLVVSRPP---------T-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEADT 99 (277)
T ss_dssp EETTEEEEEECCTT---------T-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCHHHHHH
T ss_pred EECCEEEEEECCCC---------C-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccChHHHHH
Confidence 34544455555655 4 78999999999999987765 4578888877665554 2111111 1
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHH
Q psy14493 174 QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEA 247 (318)
Q Consensus 174 ~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~ 247 (318)
........+..+..+++|+|++|.|.|+|||...+..||++|+.++++|++ +.|..+....+.+..+...+.+.
T Consensus 100 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~l 179 (277)
T 4di1_A 100 AARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKEL 179 (277)
T ss_dssp HHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHH
Confidence 123345566778888999999999999999999988899999999999886 23444444444554555555555
Q ss_pred h----cccHHHHHHcCCcceeec
Q psy14493 248 L----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 248 ~----~~~a~~a~~~G~vD~ii~ 266 (318)
+ .+++.++.+.|+||+|++
T Consensus 180 lltG~~i~A~eA~~~GLV~~vv~ 202 (277)
T 4di1_A 180 VFSGRFFDAEEALALGLIDDMVA 202 (277)
T ss_dssp HHHCCCEEHHHHHHHTSCSEEEC
T ss_pred HHcCCCCCHHHHHHCCCccEEeC
Confidence 4 489999999999999996
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.05 E-value=7.9e-09 Score=94.56 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=107.5
Q ss_pred cCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCCc-hhHHhh-----------
Q psy14493 106 NGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFPG-IDAEER----------- 172 (318)
Q Consensus 106 ~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~~-~~~e~~----------- 172 (318)
+|.-..|.-|.|. ...+++....+.+.++++.+++ ..+-+|.|.-.++++.. .....+
T Consensus 11 ~~~va~itlnrP~---------~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (268)
T 3i47_A 11 QDKVGLLTMNRIS---------KHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEEN 81 (268)
T ss_dssp ETTEEEEEECCTT---------TTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHH
T ss_pred ECCEEEEEECCCC---------cCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHHHH
Confidence 4444444455554 4578999999999999988765 45788888776655542 111111
Q ss_pred -chHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHH
Q psy14493 173 -GQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAA 245 (318)
Q Consensus 173 -g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~ 245 (318)
.........+..+..+++|+|++|.|.|.|||...+..||++|+.++++|++ +.|..+...+ .+..+...+.
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l-~~~vG~~~A~ 160 (268)
T 3i47_A 82 LEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISPYV-VRAIGERAAK 160 (268)
T ss_dssp HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHHHH-HHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHHHH-HHHhCHHHHH
Confidence 0122345566778888999999999999999999988899999999999887 3455544433 3444555555
Q ss_pred HHh----cccHHHHHHcCCcceeec
Q psy14493 246 EAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 246 e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+.+ .+++.++.+.|+||+|++
T Consensus 161 ~llltg~~i~A~eA~~~GLV~~vv~ 185 (268)
T 3i47_A 161 MLFMSAEVFDATRAYSLNLVQHCVP 185 (268)
T ss_dssp HHHHHCCEEEHHHHHHTTSCSEEEC
T ss_pred HHHHcCCccCHHHHHHcCCCcEeeC
Confidence 554 589999999999999997
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-09 Score=97.66 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=102.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCc-hhHH---------hhchHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPG-IDAE---------ERGQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~-~~~e---------~~g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
...+++....+.+.++++.+ ...+-+|.|.-.+.++.. .... ...........+..+..+++|+|++|.
T Consensus 36 ~~Nal~~~~~~~L~~al~~~-d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 114 (275)
T 3hin_A 36 KRNALNDGLMAALKDCLTDI-PDQIRAVVIHGIGDHFSAGLDLSELRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALK 114 (275)
T ss_dssp GTTCBCHHHHHHHHHHTSSC-CTTCCEEEEEESSSCSBCCBCGGGCCCCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred cCCCCCHHHHHHHHHHHHHh-CcCceEEEEECCCCCccCCCCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 44789999999999998877 457888888776554441 1111 111123445566778889999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|.|||...+..||++|+.++++|++ +-|..+.....++..+...+.+.+ .+++.++.+.|+||+|++
T Consensus 115 G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~i~A~eA~~~GLv~~vv~ 193 (275)
T 3hin_A 115 GAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIE 193 (275)
T ss_dssp SEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEES
T ss_pred CeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCCEEeC
Confidence 999999999988899999999999887 235555555555555555555554 589999999999999997
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-08 Score=94.60 Aligned_cols=138 Identities=12% Similarity=0.096 Sum_probs=101.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecC-----CCCCCchhH-----Hh-hchHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDT-----PGAFPGIDA-----EE-RGQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs-----~Ga~~~~~~-----e~-~g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++....+.+.++++.+++. .+-+|.|.-. .|+.+.+-. +. ..........+..+..+++|+|++
T Consensus 53 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 132 (287)
T 2vx2_A 53 KRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAM 132 (287)
T ss_dssp GTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 44789999999999999887654 5677777654 355543211 10 111223445566788889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|||...+..||++||.++++|++ +.|..+... +.+..+...+.+.+ .+++.++.+.|+||+|+
T Consensus 133 v~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv 211 (287)
T 2vx2_A 133 VNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVV 211 (287)
T ss_dssp ECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred ECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHHHHHHhCCCCCHHHHHHCCCcceec
Confidence 99999999999988899999999999887 346665555 55556655555554 58999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 212 ~ 212 (287)
T 2vx2_A 212 P 212 (287)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.6e-09 Score=93.22 Aligned_cols=139 Identities=13% Similarity=0.093 Sum_probs=99.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCc-hhH---------HhhchHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPG-IDA---------EERGQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~-~~~---------e~~g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
...+++....+.+..+++.+++..+-+|.|.-.++++.. ... +...........+..+..+++|+|++|.
T Consensus 27 ~~Nal~~~~~~~L~~al~~~~~~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 106 (254)
T 3isa_A 27 KRNALSAELVEALIDGVDAAHREQVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAH 106 (254)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHTTCSEEEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred cCCCCCHHHHHHHHHHHHHhhcCCcEEEEEECCCCceeeCcChHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 457899999999999998887777888888776654441 111 1011122344556778889999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEEeChhHH---HHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSVISPEGC---ASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~---a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|.|||......||++||.++++|++-...-+ ....+++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 107 G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~pg~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~ 182 (254)
T 3isa_A 107 GRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLGTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAA 182 (254)
T ss_dssp SEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCSHHHHHHHHCHHHHHHHHTTTCEEEHHHHHHTTSSSEECC
T ss_pred CeEeecchhHHHhCCEEEEcCCCEEECchhccCccHHHHHHHHHcCHHHHHHHHHhCCCCcHHHHHHCCCccEEeC
Confidence 999999999988899999999998876211100 122333444444555554 489999999999999997
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.3e-09 Score=95.02 Aligned_cols=139 Identities=16% Similarity=0.192 Sum_probs=102.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCCc-hhHHhh---chHHHHHHHHHHHhcCCCCEEEEEcCCCch
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFPG-IDAEER---GQSEAIGHSIYVMSKLKVPLISTIIGEGGS 202 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~~-~~~e~~---g~~~~~~~~~~~~s~~~vP~IavV~G~~~g 202 (318)
...+++....+.+..+++.+++. .+-+|.|.-.++++.. .....+ .........+..+..+++|+|++|.|.|.|
T Consensus 26 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 105 (255)
T 3p5m_A 26 KLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAADAANRVVRAITSLPKPVIAGVHGAAVG 105 (255)
T ss_dssp GTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHHHHHHHHHHHHHHHHHCSSCEEEEECSEEET
T ss_pred cCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcchHHHHHHHHHHHHHHhCCCCEEEEeCCeehh
Confidence 44688999999999999887654 5888888776655542 111111 112334456667788899999999999999
Q ss_pred hhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 203 GGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 203 gga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
||...+..||++|+.++++|++ +-|..+.+...++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 106 gG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~ 179 (255)
T 3p5m_A 106 FGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITS 179 (255)
T ss_dssp HHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEECC
T ss_pred hHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeC
Confidence 9999988899999999999887 345555555555555555555554 489999999999999997
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.4e-09 Score=96.50 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=102.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEec-CC------CCCCchhHH----hhchHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFID-TP------GAFPGIDAE----ERGQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvD-s~------Ga~~~~~~e----~~g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
...+++......+.++++.+++..+-+|.|.- .+ |..+.+-.. ...........+..+..+++|+|++|
T Consensus 24 ~~Nal~~~~~~~L~~al~~~~~d~vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 103 (261)
T 1ef8_A 24 KLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMV 103 (261)
T ss_dssp GTTCCCHHHHHHHHHHHHHTCSTTCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCceEEEEECCCCCCeeecCcChHhhhccCchhHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34789999999999999887655577777766 44 444432110 00101123455667778899999999
Q ss_pred cCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|.|||...+..||++|+.++++|++ +.|..+.+..+++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 104 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~ 183 (261)
T 1ef8_A 104 EGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVE 183 (261)
T ss_dssp CSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEEC
T ss_pred CCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCcccccC
Confidence 9999999999988899999999999887 456666666666666665665554 589999999999999996
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.7e-09 Score=95.29 Aligned_cols=139 Identities=18% Similarity=0.220 Sum_probs=101.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC-CCCC-chhHHh---------hchHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP-GAFP-GIDAEE---------RGQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~-Ga~~-~~~~e~---------~g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++....+.+.++++.+.+. .+-+|.|.-.+ +++. |-.... ..........+..+..+++|+|+.
T Consensus 29 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 108 (265)
T 3kqf_A 29 QANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAA 108 (265)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 45789999999999999887654 57777776655 3332 211111 111234455667788889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|||...+..||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||+++
T Consensus 109 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv 188 (265)
T 3kqf_A 109 INGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVV 188 (265)
T ss_dssp ECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred ECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEe
Confidence 99999999999988899999999999887 245544444455545555555554 48999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 189 ~ 189 (265)
T 3kqf_A 189 P 189 (265)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-08 Score=91.40 Aligned_cols=138 Identities=16% Similarity=0.140 Sum_probs=100.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-----chhHHh----hc-hHH--H-HHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-----GIDAEE----RG-QSE--A-IGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-----~~~~e~----~g-~~~--~-~~~~~~~~s~~~vP~I 193 (318)
...+++......+.++++.+.+. .+-+|.|.-.++++. .+-... .. ... . ....+..+..+++|+|
T Consensus 19 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 98 (253)
T 1uiy_A 19 RRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTV 98 (253)
T ss_dssp GTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 34689999999999999887664 577777766443333 211110 00 001 1 3455667778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|.|||...+..||++||.++++|++ +.|..+ +...++..+...+.+.+ .+++.++.+.|+||+
T Consensus 99 Aav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~ 177 (253)
T 1uiy_A 99 AAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNR 177 (253)
T ss_dssp EEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSE
T ss_pred EEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCcce
Confidence 9999999999999988899999999999887 346666 55555555555555554 589999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 178 vv~ 180 (253)
T 1uiy_A 178 IAP 180 (253)
T ss_dssp EEC
T ss_pred ecC
Confidence 996
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.9e-09 Score=95.23 Aligned_cols=139 Identities=20% Similarity=0.246 Sum_probs=100.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh----------chHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER----------GQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~----------g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++......+.++++.+++ ..+-+|.|.-.++++. |.....+ .........+..+..+++|+|+.
T Consensus 26 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 105 (256)
T 3qmj_A 26 ALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICA 105 (256)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCCCSSHHHHHHHHHHHCCSCEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4478999999999999988765 4577888866554333 1111111 01223455667778889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|||...+..||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||+++
T Consensus 106 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv 185 (256)
T 3qmj_A 106 VNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRIC 185 (256)
T ss_dssp ECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHTSSSEEE
T ss_pred ECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEe
Confidence 99999999999998999999999998886 234444445455545545555554 48999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 186 ~ 186 (256)
T 3qmj_A 186 S 186 (256)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.2e-09 Score=96.62 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=108.9
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh---ch----H
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER---GQ----S 175 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~---g~----~ 175 (318)
.+|.-..|--|+|. ...+++......+..+++.+.+ ..+-+|.|.-.+.++. |...... .. .
T Consensus 11 ~~~~Va~itlnrP~---------~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~ 81 (258)
T 4fzw_A 11 RQQRVLLLTLNRPA---------ARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAATLN 81 (258)
T ss_dssp EETTEEEEEEECGG---------GTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHHHHHT
T ss_pred EECCEEEEEEcCCC---------ccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhhhHHH
Confidence 34554445555554 4468999999999999987765 4578888876654443 1111111 00 0
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh-
Q psy14493 176 EAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL- 248 (318)
Q Consensus 176 ~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~- 248 (318)
......+..+..+++|+|+.|.|.|+|||...+..||++|+.++++|++ +.|..+.+..+++..+...+.+.+
T Consensus 82 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~lll 161 (258)
T 4fzw_A 82 DTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVL 161 (258)
T ss_dssp CSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHHHHH
Confidence 1234556677888999999999999999999988899999999999887 245555555555555655666654
Q ss_pred ---cccHHHHHHcCCcceeec
Q psy14493 249 ---GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 ---~~~a~~a~~~G~vD~ii~ 266 (318)
.+++.++.+.|+||+|++
T Consensus 162 tg~~i~a~eA~~~GLv~~vv~ 182 (258)
T 4fzw_A 162 SGESITAQQAQQAGLVSDVFP 182 (258)
T ss_dssp HCCCEEHHHHHHHTSCSEEEC
T ss_pred cCCcCcHHHHHHCCCeeEEeC
Confidence 589999999999999997
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=99.02 E-value=9.1e-09 Score=94.62 Aligned_cols=139 Identities=15% Similarity=0.199 Sum_probs=102.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-----chhHHhh---------chHHHHHHHHHHHhcCCCCE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-----GIDAEER---------GQSEAIGHSIYVMSKLKVPL 192 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-----~~~~e~~---------g~~~~~~~~~~~~s~~~vP~ 192 (318)
...+++....+.+.++++.+.+ ..+-+|.|.-.++++. .+-.... .........+..+..+++|+
T Consensus 37 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 116 (279)
T 3g64_A 37 KLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPV 116 (279)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSSCE
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 4578999999999999988765 4688888876655444 1111100 01123345566778889999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcccEEEE------eC-hhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCc
Q psy14493 193 ISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------IS-PEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLI 261 (318)
Q Consensus 193 IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~g-P~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~v 261 (318)
|++|.|.|.|||...+..||++|+.++++|++ +. |..+....+.+..+...+.+.+ .+++.++.+.|+|
T Consensus 117 IAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv 196 (279)
T 3g64_A 117 IAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLI 196 (279)
T ss_dssp EEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCC
T ss_pred EEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCC
Confidence 99999999999999988899999999999886 23 6655555555555555555554 4899999999999
Q ss_pred ceeec
Q psy14493 262 NKIIK 266 (318)
Q Consensus 262 D~ii~ 266 (318)
|+|++
T Consensus 197 ~~vv~ 201 (279)
T 3g64_A 197 SELTE 201 (279)
T ss_dssp SEECC
T ss_pred CEecC
Confidence 99997
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.2e-09 Score=95.72 Aligned_cols=139 Identities=17% Similarity=0.174 Sum_probs=100.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-----chh--------H-Hh-hchHHHHHHHHHHHhcCCCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-----GID--------A-EE-RGQSEAIGHSIYVMSKLKVP 191 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-----~~~--------~-e~-~g~~~~~~~~~~~~s~~~vP 191 (318)
...+++....+.+.++++.+++. .+-+|.|.-.++++. .+- . +. ..........+..+..+++|
T Consensus 23 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 102 (269)
T 1nzy_A 23 HRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRP 102 (269)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34689999999999999887654 577888876544333 210 1 10 01112244556677888999
Q ss_pred EEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCc
Q psy14493 192 LISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLI 261 (318)
Q Consensus 192 ~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~v 261 (318)
+|++|.|.|.|||...+..||++|+.++++|++ +.|..+.+...++..+...+.+.+ .+++.++.+.|+|
T Consensus 103 vIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv 182 (269)
T 1nzy_A 103 VLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLV 182 (269)
T ss_dssp EEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSC
T ss_pred EEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCc
Confidence 999999999999999988899999999999887 345555555555544444555543 5899999999999
Q ss_pred ceeec
Q psy14493 262 NKIIK 266 (318)
Q Consensus 262 D~ii~ 266 (318)
|++++
T Consensus 183 ~~vv~ 187 (269)
T 1nzy_A 183 SRVYP 187 (269)
T ss_dssp SCEEC
T ss_pred cEeeC
Confidence 99996
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.01 E-value=7e-09 Score=94.24 Aligned_cols=139 Identities=16% Similarity=0.196 Sum_probs=98.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC-----CCCCchhHHhh--chHH--HHHHHHHHHhcCCCCEEEEEc
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP-----GAFPGIDAEER--GQSE--AIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~-----Ga~~~~~~e~~--g~~~--~~~~~~~~~s~~~vP~IavV~ 197 (318)
...+++....+.+.++++.+.+. .+-+|.|.-.+ |..+.+-.... .... .....+..+..+++|+|++|.
T Consensus 23 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 102 (257)
T 2ej5_A 23 QLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVN 102 (257)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCCSCEEEEEC
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccchhHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 44789999999999999887654 57777777644 33332211100 0011 134556677888999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|.|||...+..||++|+.++++|++ +.|..+.+...++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 103 G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~ 181 (257)
T 2ej5_A 103 GAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIP 181 (257)
T ss_dssp SEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEEEC
T ss_pred ccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCcceecC
Confidence 999999999988899999999999887 345555554555545544555543 589999999999999996
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-08 Score=94.54 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=108.7
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCCc-hhHHh-----------
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFPG-IDAEE----------- 171 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~~-~~~e~----------- 171 (318)
.+|.-..|.-|.|. ...+++......+..+++.+++. .+-+|.|.-.++++.. .....
T Consensus 30 ~~~~va~itlnrP~---------~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~ 100 (290)
T 3sll_A 30 PRPEIALVTLNRPE---------RMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLT 100 (290)
T ss_dssp EETTEEEEEECCGG---------GTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCC
T ss_pred EECCEEEEEECCCC---------cCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhccccccccc
Confidence 44544445555554 45789999999999999887754 5778888766554431 11110
Q ss_pred -----hchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChh-HHHHhhhcccc
Q psy14493 172 -----RGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPE-GCASILWKTSK 239 (318)
Q Consensus 172 -----~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~-~~a~il~~~~~ 239 (318)
..........+..+..+++|+|++|.|.|+|||...+..||++|+.++++|++ +.|. .+.+....+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~v 180 (290)
T 3sll_A 101 QPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAI 180 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHh
Confidence 11123445666777888999999999999999999988899999999999887 3454 45555555545
Q ss_pred chHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 240 RASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 240 ~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+...+.+.+ .+++.++.+.|+||+|++
T Consensus 181 G~~~A~~llltG~~i~A~eA~~~GLV~~vv~ 211 (290)
T 3sll_A 181 GTSRASDIMLTGRDVDADEAERIGLVSRKVA 211 (290)
T ss_dssp CHHHHHHHHHHCCCEEHHHHHHHTSSSEEEC
T ss_pred CHHHHHHHHHcCCCCCHHHHHHCCCccEEeC
Confidence 555555554 489999999999999996
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.00 E-value=6e-09 Score=95.35 Aligned_cols=138 Identities=15% Similarity=0.153 Sum_probs=101.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCc-hhHHhh-----------chHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPG-IDAEER-----------GQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~-~~~e~~-----------g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++....+.+.++++.+++..+-+|.|.-.++++.. .....+ .........+..+..+++|+|+.
T Consensus 27 ~~Nal~~~~~~~L~~al~~~~~d~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 106 (267)
T 3hp0_A 27 ANNTINDTLIEECLQVLNQCETSTVTVVVLEGLPEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISH 106 (267)
T ss_dssp GTTCBCSHHHHHHHHHHHHHHHSSCCEEEEECCSSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCEEEEEECCCCceecCcCHHHHHhcccChHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 446899999999999998887766778888776655542 111111 11234556667788889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|+|||...+..||++|+.++++|++ +.|.++.. ...+..+...+.+.+ .+++.++.+.|+|++++
T Consensus 107 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv 185 (267)
T 3hp0_A 107 VRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACVLP-FLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFD 185 (267)
T ss_dssp ECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHH-HHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSCBC
T ss_pred ECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhHHH-HHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceec
Confidence 99999999999988899999999999887 23444433 333445555555554 58999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 186 ~ 186 (267)
T 3hp0_A 186 A 186 (267)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A | Back alignment and structure |
|---|
Probab=99.00 E-value=7.3e-09 Score=92.76 Aligned_cols=128 Identities=24% Similarity=0.252 Sum_probs=91.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEE---cCCCchhh
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKFN-LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTI---IGEGGSGG 204 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~~-lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV---~G~~~ggg 204 (318)
.|.+++..+..+.+.++.|.+.+ .+||..+||||..+. ........+...++|+|+.| .|.|+|+|
T Consensus 16 ~g~I~~~~~~~l~~~l~~a~~~~~~~Ivl~inspGG~v~----------~~~~i~~~i~~~~~PVia~v~p~~G~AasaG 85 (230)
T 3viv_A 16 KGQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRAD----------AMMNIVQRIQQSKIPVIIYVYPPGASAASAG 85 (230)
T ss_dssp ESCBCHHHHHHHHHHHHHHHHTTCSEEEEEEEBSCEEHH----------HHHHHHHHHHTCSSCEEEEECSTTCEEETHH
T ss_pred eCEECHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCcCHH----------HHHHHHHHHHhCCCCEEEEEecCCCEEhHHH
Confidence 37788999999999998887655 467777899985432 22233445556789999999 99999999
Q ss_pred hhhhccccEEEEEcccEEEEeChhH------HHH---------------hhhccccc-hHHHHHHh----cccHHHHHHc
Q psy14493 205 ALAIAVSDITLMLQYAIYSVISPEG------CAS---------------ILWKTSKR-ASDAAEAL----GLTADKLKSI 258 (318)
Q Consensus 205 a~~~~~~D~via~~~A~i~v~gP~~------~a~---------------il~~~~~~-~~~a~e~~----~~~a~~a~~~ 258 (318)
++.+..||+++|.|++.++..+|.. .+. .+.+.... .+.+.+.+ .+++.+|.+.
T Consensus 86 ~~ia~a~d~~~a~p~a~ig~~~p~~~~~~~G~~~~~~~k~~~~~~~~~~~la~~~Gr~~~~a~~~~~~~~~ltA~EAle~ 165 (230)
T 3viv_A 86 TYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKY 165 (230)
T ss_dssp HHHHHTSSEEEECTTCEEECCCEEEEECTTSCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCEECHHHHHHT
T ss_pred HHHHHhcCceeECCCCEEEeccceecCCCCCCchHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhcCCeecHHHHHHc
Confidence 9999889999999999998766642 100 01000001 12222332 4799999999
Q ss_pred CCcceeec
Q psy14493 259 GLINKIIK 266 (318)
Q Consensus 259 G~vD~ii~ 266 (318)
|+||.|++
T Consensus 166 GliD~V~~ 173 (230)
T 3viv_A 166 GVIEVVAR 173 (230)
T ss_dssp TSCSEECS
T ss_pred CCceEecC
Confidence 99999996
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-08 Score=92.03 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=101.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCCc-hhHHhh----------chHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFPG-IDAEER----------GQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~~-~~~e~~----------g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++......+.++++.+.+. .+-+|.|.-.++++.. .....+ .........+..+..+++|+|++
T Consensus 46 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 125 (286)
T 3myb_A 46 AFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIAR 125 (286)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHHSSSCEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 44689999999999999887654 5778888766555442 111111 11234455667788889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEEe------ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSVI------SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v~------gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|||...+..||++|+.++++|++- .|.+ ......+..+...+.+.+ .+++.++.+.|+||+|+
T Consensus 126 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~~g-~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv 204 (286)
T 3myb_A 126 VHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLFCST-PGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVV 204 (286)
T ss_dssp ECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCHH-HHHHHTTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred ECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCCCch-HHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCCcEec
Confidence 999999999999888999999999988761 2333 334445555655665654 48999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 205 ~ 205 (286)
T 3myb_A 205 A 205 (286)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A | Back alignment and structure |
|---|
Probab=98.98 E-value=8.1e-09 Score=93.84 Aligned_cols=138 Identities=14% Similarity=0.180 Sum_probs=97.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecC-----CCCCCchhHHhh---ch-HHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDT-----PGAFPGIDAEER---GQ-SEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs-----~Ga~~~~~~e~~---g~-~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
...+++......+.++++.+.+. .+-+|.|.-. .|..+.+-.... .. .... ..+..+..+++|+|+.|.
T Consensus 25 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~l~~~~kPvIAav~ 103 (258)
T 2pbp_A 25 VLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQF-ADWDRLSIVKTPMIAAVN 103 (258)
T ss_dssp GTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHHHHHHHCTT-HHHHHHHTCCSCEEEEEC
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhHHHHHHH-HHHHHHHhCCCCEEEEEc
Confidence 34789999999999999887654 5677777654 344442211000 00 0111 445677788999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|.|||......||++||.++++|++ +-|..+.+..+++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 104 G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~ 182 (258)
T 2pbp_A 104 GLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVS 182 (258)
T ss_dssp SEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEEC
T ss_pred CEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceeeC
Confidence 999999999988999999999999887 234444444444444444454543 489999999999999996
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-09 Score=96.99 Aligned_cols=139 Identities=17% Similarity=0.187 Sum_probs=96.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhh
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGA 205 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga 205 (318)
...+++......+.++++.+++ ..+-+|.|.-.++++. |.....+............+..+++|+|+.|.|.|.|||.
T Consensus 29 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~ 108 (256)
T 3pe8_A 29 SRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTTELPDISPKWPDMTKPVIGAINGAAVTGGL 108 (256)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC---------CCCCCCCSSCEEEEECSEEETHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhHHHHHHHHHHHhCCCCEEEEECCeeechHH
Confidence 4578999999999999988765 4577888876655444 2111111111111112234556789999999999999999
Q ss_pred hhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 206 LAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 206 ~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
..+..||++|+.++++|++ +-|..+.+...++..+...+.+.+ .+++.++++.|+||++++
T Consensus 109 ~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~ 179 (256)
T 3pe8_A 109 ELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVA 179 (256)
T ss_dssp HHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSCEEC
T ss_pred HHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHCCCCeEEeC
Confidence 9988899999999999886 334444444445545555555554 489999999999999997
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-08 Score=92.16 Aligned_cols=151 Identities=13% Similarity=0.027 Sum_probs=108.0
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC-----CCCCchh----------
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP-----GAFPGID---------- 168 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~-----Ga~~~~~---------- 168 (318)
.+|.-..|.-|.|. . .+++....+.+.++++.+.+. .+-+|.|.-.+ |..+..-
T Consensus 13 ~~~~v~~itlnrP~---------~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 82 (263)
T 3l3s_A 13 LSEGVLTLTLGRAP---------A-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEG 82 (263)
T ss_dssp ESSSEEEEEECSTT---------T-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCS
T ss_pred eeCCEEEEEECCCC---------C-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccc
Confidence 45554455555554 5 889999999999999887764 57777776543 3333211
Q ss_pred HH-hhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccch
Q psy14493 169 AE-ERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRA 241 (318)
Q Consensus 169 ~e-~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~ 241 (318)
.+ ...........+..+..+++|+|++|.|.|.|||...+..||++|+.++++|++ +.|.+ .....++..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~g-~~~~l~r~vG~ 161 (263)
T 3l3s_A 83 RAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFCTT-PAVAVSRVIGR 161 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSCCHH-HHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCCCcc-HHHHHHHHcCH
Confidence 01 111223455667778889999999999999999999988899999999998886 12444 34445555565
Q ss_pred HHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 242 SDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 242 ~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
..+.+.+ .+++.++.+.|+||++++
T Consensus 162 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~ 190 (263)
T 3l3s_A 162 RAVTEMALTGATYDADWALAAGLINRILP 190 (263)
T ss_dssp HHHHHHHHHCCEEEHHHHHHHTSSSEECC
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCccEEeC
Confidence 5665654 489999999999999996
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A | Back alignment and structure |
|---|
Probab=98.97 E-value=9.9e-09 Score=94.09 Aligned_cols=137 Identities=17% Similarity=0.217 Sum_probs=102.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCCc-hhHHhh-----------chHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFPG-IDAEER-----------GQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~~-~~~e~~-----------g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
.+++......+.++++.+.+. .+-+|.|.-.++++.. .....+ .........+..+..+++|+|++|
T Consensus 35 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 114 (272)
T 3qk8_A 35 NSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAI 114 (272)
T ss_dssp HEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 578899999999999887654 6888888776665552 111111 112234456677888999999999
Q ss_pred cCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|.|||...+..||++||.++++|++ +-|..+....+++..+...+.+.+ .+++.++.+.|+||+|++
T Consensus 115 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~ 194 (272)
T 3qk8_A 115 RGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVD 194 (272)
T ss_dssp CSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEEC
T ss_pred CCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEeeC
Confidence 9999999999988899999999999887 344444555555555555555554 489999999999999996
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-08 Score=90.56 Aligned_cols=135 Identities=13% Similarity=0.135 Sum_probs=97.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-----chhHH----hhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP-----GIDAE----ERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~-----~~~~e----~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
.+++....+.+.++++.+++.. -+|.|.-.++++. .+-.. ...........+..+..+++|+|++|.|.|
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~-~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 105 (232)
T 3ot6_A 27 NAISPDVIIAFNAALDQAEKDR-AIVIVTGQPGILSGGYDLKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACPGHA 105 (232)
T ss_dssp TCBCHHHHHHHHHHHHHHHHTT-CEEEEECBTEEEECCBCHHHHHHCHHHHHHHHHHHHHHHHHHHTCSSCEEEECCEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCC-CEEEEECCCCCccCCcCHHHHhhChHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEe
Confidence 7899999999999998887653 5666655443332 21110 111123445566778889999999999999
Q ss_pred chhhhhhhccccEEEEEcc-cEEEE------e-ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 201 GSGGALAIAVSDITLMLQY-AIYSV------I-SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 201 ~ggga~~~~~~D~via~~~-A~i~v------~-gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|||...+..||++|+.++ ++|++ + .|.++...+. ...+...+.+.+ .+++.++.+.|+||++++
T Consensus 106 ~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~-~~ig~~~a~~l~ltg~~i~A~eA~~~GLv~~vv~ 182 (232)
T 3ot6_A 106 VAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELAR-DRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVS 182 (232)
T ss_dssp ETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHH-HHSCHHHHHHHHTSCCEECHHHHHHHTSCSEEEC
T ss_pred ehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHH-HHhCHHHHHHHHHcCCccCHHHHHHCCCCCEecC
Confidence 9999999888999999998 78887 2 3455544433 334555555554 479999999999999997
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-08 Score=92.36 Aligned_cols=136 Identities=17% Similarity=0.181 Sum_probs=99.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCC-----CCCchhH---Hhh-------chHHHHHHHHHHHhcCCCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPG-----AFPGIDA---EER-------GQSEAIGHSIYVMSKLKVP 191 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~G-----a~~~~~~---e~~-------g~~~~~~~~~~~~s~~~vP 191 (318)
...+++....+.+.++++.+++. .+-+|.|.-.+. ..+.+-. ... .........+..+..+++|
T Consensus 31 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 110 (267)
T 3oc7_A 31 NRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLP 110 (267)
T ss_dssp GTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------CHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCchhhhhhHHHHHHHHHHHHHHHHhCCCC
Confidence 45789999999999999887654 577887765443 3332211 000 1123445566777888999
Q ss_pred EEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCc
Q psy14493 192 LISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLI 261 (318)
Q Consensus 192 ~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~v 261 (318)
+|+.|.|.|+|||...+..||++|+.++++|++ +.|..+.....+ ..+...+.+.+ .+++.++++.|+|
T Consensus 111 vIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~vG~~~A~~l~ltg~~~~a~eA~~~GLv 189 (267)
T 3oc7_A 111 VIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-KLSARAAARYYLTGEKFDARRAEEIGLI 189 (267)
T ss_dssp EEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-TSCHHHHHHHHHHCCCBCHHHHHHHTSS
T ss_pred EEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-HhCHHHHHHHHHcCCccCHHHHHHCCCh
Confidence 999999999999999988899999999999886 345555555656 56665666654 5899999999999
Q ss_pred cee
Q psy14493 262 NKI 264 (318)
Q Consensus 262 D~i 264 (318)
|++
T Consensus 190 ~~v 192 (267)
T 3oc7_A 190 TMA 192 (267)
T ss_dssp SEE
T ss_pred hhh
Confidence 999
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-08 Score=92.78 Aligned_cols=139 Identities=15% Similarity=0.099 Sum_probs=99.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCCc-hhHH--hhc---hHH-HHHH-HHHHH-h--cCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFPG-IDAE--ERG---QSE-AIGH-SIYVM-S--KLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~~-~~~e--~~g---~~~-~~~~-~~~~~-s--~~~vP~Iav 195 (318)
...+++....+.+.++++.+++ ..+-+|.|.-.++++.. .... ... .+. .... .+..+ . .+++|+|++
T Consensus 29 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAa 108 (265)
T 3rsi_A 29 RRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAA 108 (265)
T ss_dssp GTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC--------------CCCHHHHHHHTTSSCCCSSCEEEE
T ss_pred cccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCCcccccchHHHHHHhHHHHHHHHHHhcCCCCCEEEE
Confidence 4578999999999999988765 45778888766554442 1111 000 000 1122 45556 6 788999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|||...+..||++|+.++++|++ +.|..+.+..+++..+...+.+.+ .+++.++.+.|+||+++
T Consensus 109 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv 188 (265)
T 3rsi_A 109 VNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVV 188 (265)
T ss_dssp ECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEE
T ss_pred ECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEec
Confidence 99999999999998999999999999887 345555555555555555555554 48999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 189 ~ 189 (265)
T 3rsi_A 189 P 189 (265)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.5e-09 Score=94.11 Aligned_cols=134 Identities=19% Similarity=0.280 Sum_probs=94.4
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIAEK--FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A~~--~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
+++.+.+|.+++..+..+.+.++.+.+ ..-+|+..+||||.....+ ......+...+.|+++++.|.|
T Consensus 45 ~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPGG~v~ag----------~~I~~~i~~~~~pV~t~v~G~A 114 (218)
T 1y7o_A 45 DRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAG----------LAIVDTMNFIKADVQTIVMGMA 114 (218)
T ss_dssp TTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHH----------HHHHHHHHHSSSCEEEEEEEEE
T ss_pred CCEEEEeCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHH----------HHHHHHHHhcCCCEEEEEccEe
Confidence 344467788899999999988877654 3579999999999654322 2223344556789999999999
Q ss_pred chhhhhhhccccE--EEEEcccEEEEeChhHHH------------------------Hhhhccc-cchHHHHHHh----c
Q psy14493 201 GSGGALAIAVSDI--TLMLQYAIYSVISPEGCA------------------------SILWKTS-KRASDAAEAL----G 249 (318)
Q Consensus 201 ~ggga~~~~~~D~--via~~~A~i~v~gP~~~a------------------------~il~~~~-~~~~~a~e~~----~ 249 (318)
+++|++.+..||. ++|.|++.+++..|.+.. .++.+.. ...+.+.+.+ .
T Consensus 115 aS~G~~Ia~a~d~g~r~a~p~a~igih~p~~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~~~~~ 194 (218)
T 1y7o_A 115 ASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDNW 194 (218)
T ss_dssp ETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHSCCC
T ss_pred HHHHHHHHHcCCcCcEEEcCCcEEEEecccccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCCE
Confidence 9999999999999 999999999987775432 0000000 0011222222 3
Q ss_pred ccHHHHHHcCCcceeec
Q psy14493 250 LTADKLKSIGLINKIIK 266 (318)
Q Consensus 250 ~~a~~a~~~G~vD~ii~ 266 (318)
+++.+|++.|+||+|++
T Consensus 195 ~ta~EA~e~GLVD~v~~ 211 (218)
T 1y7o_A 195 MSAQETLEYGFIDEIMA 211 (218)
T ss_dssp BCHHHHHHHTSCSEECC
T ss_pred EcHHHHHHCCCCcEEcC
Confidence 79999999999999997
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-08 Score=93.72 Aligned_cols=139 Identities=17% Similarity=0.146 Sum_probs=100.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh------------ch---H-H----HHHHHHHHH
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER------------GQ---S-E----AIGHSIYVM 185 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~------------g~---~-~----~~~~~~~~~ 185 (318)
...+++......+.++++.+.+. .+-+|.|.-.++++. |.....+ .. + . .....+..+
T Consensus 29 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 108 (280)
T 1pjh_A 29 NLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAF 108 (280)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999887654 577888876554443 2111110 00 0 0 112445667
Q ss_pred hcCCCCEEEEEcCCCchhhhhhhccccEEEEE-cccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHH
Q psy14493 186 SKLKVPLISTIIGEGGSGGALAIAVSDITLML-QYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADK 254 (318)
Q Consensus 186 s~~~vP~IavV~G~~~ggga~~~~~~D~via~-~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~ 254 (318)
..+++|+|++|.|.|+|||...+..||++|+. ++++|++ +.|..+.+..+++..+...+.+.+ .+++.+
T Consensus 109 ~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~e 188 (280)
T 1pjh_A 109 IKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDI 188 (280)
T ss_dssp HHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHH
T ss_pred HhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHH
Confidence 78899999999999999999998889999999 8999887 345555555555555555555554 489999
Q ss_pred HHHcCCcceeec
Q psy14493 255 LKSIGLINKIIK 266 (318)
Q Consensus 255 a~~~G~vD~ii~ 266 (318)
+.+.|+|++|++
T Consensus 189 A~~~GLv~~vv~ 200 (280)
T 1pjh_A 189 MCENGFISKNFN 200 (280)
T ss_dssp HHHTTCCSEECC
T ss_pred HHHCCCcceeeC
Confidence 999999999996
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A | Back alignment and structure |
|---|
Probab=98.93 E-value=5.4e-09 Score=94.30 Aligned_cols=139 Identities=14% Similarity=0.207 Sum_probs=97.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhhchHH----HHHHHHHHHhcCCCCEEEEEcCCCc
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEERGQSE----AIGHSIYVMSKLKVPLISTIIGEGG 201 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~g~~~----~~~~~~~~~s~~~vP~IavV~G~~~ 201 (318)
...+++....+.+.++++.+.+. .+-+|.|.-.++++. |.....+.... ...+.+..+..+++|+|++|.|.|.
T Consensus 23 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 102 (243)
T 2q35_A 23 SRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGEVEVLDLSGLILDCEIPIIAAMQGHSF 102 (243)
T ss_dssp GTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTCCCCCCCHHHHHTCCSCEEEEECSEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccchhhHHHHHHHHHHhCCCCEEEEEcCccc
Confidence 34689999999999999887654 577888776443333 21111110000 0123345677889999999999999
Q ss_pred hhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 202 SGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 202 ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|||......||++||.++++|++ +.|..+.+..+++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 103 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~ 177 (243)
T 2q35_A 103 GGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVS 177 (243)
T ss_dssp THHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTCSSCEEC
T ss_pred cchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEecC
Confidence 99999988899999999998877 334444444444444444455543 589999999999999996
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-08 Score=96.49 Aligned_cols=153 Identities=9% Similarity=0.030 Sum_probs=111.1
Q ss_pred EEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chhHHhh--------
Q psy14493 104 RINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GIDAEER-------- 172 (318)
Q Consensus 104 ~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~~e~~-------- 172 (318)
.++|.-..|.-|.|. ...+++....+.+..+++.+.+ ..+-+|.|.-+++ ++. |-....+
T Consensus 14 e~~~~Va~itLnrP~---------~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~ 84 (353)
T 4hdt_A 14 NVEGGVGLLTLNRPK---------AINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADG 84 (353)
T ss_dssp EEETTEEEEEECCGG---------GTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTS
T ss_pred EEECCEEEEEEcCCC---------ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhh
Confidence 466665555556665 3468999999999999988765 4678888876553 333 2211111
Q ss_pred ----chHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchH
Q psy14493 173 ----GQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRAS 242 (318)
Q Consensus 173 ----g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~ 242 (318)
.......+.+..+..+++|+|++|.|.|+|||...+..||++|+.++++|++ +.|..+.+.+.++..+ .
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-~ 163 (353)
T 4hdt_A 85 AEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG-K 163 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST-T
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh-H
Confidence 1123345566778888999999999999999999998999999999999887 3466666666666554 3
Q ss_pred HHHHHh----cccHHHHHHcCCcceeec
Q psy14493 243 DAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 243 ~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.+.+.+ .+++.++.+.|+|+++++
T Consensus 164 ~a~~l~ltG~~i~A~eA~~~GLv~~vv~ 191 (353)
T 4hdt_A 164 LGLHAALTGAPFSGADAIVMGFADHYVP 191 (353)
T ss_dssp HHHHHHHHCCCBCHHHHHHHTSCSEECC
T ss_pred HHHHHHhcCCCCCHHHHHHcCCCcEEeC
Confidence 444443 589999999999999997
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-08 Score=90.69 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=98.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEec-CC-----CCCCchhH----HhhchHHHH-HHHHHHHhcCCCCEEEEEc
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFID-TP-----GAFPGIDA----EERGQSEAI-GHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvD-s~-----Ga~~~~~~----e~~g~~~~~-~~~~~~~s~~~vP~IavV~ 197 (318)
.+++......+.++++.+++. .+-+|.|.- .+ |+.+.+-. +.......+ ...+..+..+++|+|++|.
T Consensus 30 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 109 (265)
T 2ppy_A 30 NSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLE 109 (265)
T ss_dssp CCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHHSSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhccchhHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 578999999999999887654 577777766 44 33332110 000011223 4556677888999999999
Q ss_pred CCCchhhhhhhccccEEEEEccc-EEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYA-IYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A-~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|.|||...+..||++|+.+++ +|++ +.|..+......+..+...+.+.+ .+++.++.+.|+||++++
T Consensus 110 G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~ 189 (265)
T 2ppy_A 110 GHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFP 189 (265)
T ss_dssp SEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSEEEC
T ss_pred CEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCcceecC
Confidence 99999999998889999999999 9887 345555555555545544555543 589999999999999996
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.4e-09 Score=95.29 Aligned_cols=139 Identities=13% Similarity=0.197 Sum_probs=98.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh---c----hHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER---G----QSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~---g----~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
...+++....+.+.++++.+++. .+-+|.|.-.++++. |.....+ . ........+..+..+++|+|++|.|
T Consensus 45 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 124 (278)
T 3h81_A 45 ALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAG 124 (278)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHHHHHHTTTGGGHHHHTCCSCEEEEECB
T ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhhHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 45789999999999999887654 577787765443333 1111110 0 0111122245677889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|||...+..||++|+.++++|++ +-|..+.+..+++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 125 ~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~ 202 (278)
T 3h81_A 125 YALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVP 202 (278)
T ss_dssp EEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEEC
T ss_pred eeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCccEEeC
Confidence 99999999988899999999999886 334444444445545555555554 589999999999999997
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.4e-09 Score=94.47 Aligned_cols=153 Identities=19% Similarity=0.272 Sum_probs=103.3
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhhchH------H
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEERGQS------E 176 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~g~~------~ 176 (318)
.+|.-..|.-|.+. ...+++....+.+.++++.+++ ..+-+|.|.-.++++. |.....+... .
T Consensus 26 ~~~~v~~itlnrP~---------~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 96 (278)
T 4f47_A 26 QRGHTLIVTMNRPS---------RRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFK 96 (278)
T ss_dssp EETTEEEEEECCGG---------GTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC------------------
T ss_pred EECCEEEEEEcCCC---------ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhHH
Confidence 34444444455554 4578999999999999988765 4688888876665554 2211111110 0
Q ss_pred ---HHHHHHHHHh---cCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHH
Q psy14493 177 ---AIGHSIYVMS---KLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDA 244 (318)
Q Consensus 177 ---~~~~~~~~~s---~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a 244 (318)
.....+..+. .+++|+|++|.|.|+|||...+..||++|+.++++|++ +.|..+......+..+...+
T Consensus 97 ~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 176 (278)
T 4f47_A 97 DGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVA 176 (278)
T ss_dssp ----CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHHHH
Confidence 0011122334 77899999999999999999988999999999999886 34555545555555555555
Q ss_pred HHHh----cccHHHHHHcCCcceeec
Q psy14493 245 AEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 245 ~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.+.+ .+++.++++.|+||++++
T Consensus 177 ~~l~ltg~~~~a~eA~~~GLv~~vv~ 202 (278)
T 4f47_A 177 CDLLLTGRHITAAEAKEMGLVGHVVP 202 (278)
T ss_dssp HHHHHHCCCEEHHHHHHTTSCSEEEC
T ss_pred HHHHHcCCcCCHHHHHHCCCceEeeC
Confidence 5554 489999999999999997
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-08 Score=91.88 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=97.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh--------ch-HHHHH----HH-HHHHhcCCCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER--------GQ-SEAIG----HS-IYVMSKLKVP 191 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~--------g~-~~~~~----~~-~~~~s~~~vP 191 (318)
...+++......+.++++.+.+. .+-+|.|.-.++++. |-....+ .. ..... .. +..+..+++|
T Consensus 29 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 108 (276)
T 2j5i_A 29 KRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKP 108 (276)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTHHHHHHHHHHHHHTTTTTTCSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44689999999999999887764 566777766544443 2111111 00 11111 11 3345677899
Q ss_pred EEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCc
Q psy14493 192 LISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLI 261 (318)
Q Consensus 192 ~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~v 261 (318)
+|++|.|.|.|||...+..||++|+.++++|++ +.|..+.+...++..+...+.+.+ .+++.++.+.|+|
T Consensus 109 vIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv 188 (276)
T 2j5i_A 109 TIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLV 188 (276)
T ss_dssp EEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSS
T ss_pred EEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCc
Confidence 999999999999999988899999999999887 345555555555555555555554 5899999999999
Q ss_pred ceeec
Q psy14493 262 NKIIK 266 (318)
Q Consensus 262 D~ii~ 266 (318)
|++++
T Consensus 189 ~~vv~ 193 (276)
T 2j5i_A 189 NESVP 193 (276)
T ss_dssp SEEEC
T ss_pred cEeeC
Confidence 99996
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.5e-08 Score=89.99 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=98.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHH--h--h-c------hHHHHHHHHHHHhcCCCCEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAE--E--R-G------QSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e--~--~-g------~~~~~~~~~~~~s~~~vP~Iav 195 (318)
..+++......+.++++.+++. .+-+|.|.-.++++. |.... . . . ........+..+..+++|+|++
T Consensus 31 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 110 (264)
T 1wz8_A 31 LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAA 110 (264)
T ss_dssp GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccccccccccchHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3678999999999999887654 577777766443333 11111 0 0 0 1122345566778889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|||...+..||++||.++++|++ +.|..+.....++..+...+.+.+ .+++.++.+.|+||+++
T Consensus 111 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv 190 (264)
T 1wz8_A 111 VEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAV 190 (264)
T ss_dssp ECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEE
T ss_pred ECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceeec
Confidence 99999999999988899999999999887 345544555555545544555543 58999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 191 ~ 191 (264)
T 1wz8_A 191 E 191 (264)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=98.91 E-value=7e-09 Score=96.37 Aligned_cols=139 Identities=14% Similarity=0.120 Sum_probs=97.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCCc-hhHHhhch-----------------HHHHHHHHHHHhcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFPG-IDAEERGQ-----------------SEAIGHSIYVMSKL 188 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~~-~~~e~~g~-----------------~~~~~~~~~~~s~~ 188 (318)
...+++....+.+.++++.+++. .+-+|.|.-.++++.. -....+.. .......+..+..+
T Consensus 50 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (298)
T 3qre_A 50 RLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTML 129 (298)
T ss_dssp GTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-----------------------------CCTTGGGGS
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhccccccccccchhHHHHHHHHHHHHHHHHhC
Confidence 45789999999999999887654 5778888766554431 11111100 00111223345677
Q ss_pred CCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEe------ChhHHHHhhhccccchHHHHHHh----cccHHHHHHc
Q psy14493 189 KVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVI------SPEGCASILWKTSKRASDAAEAL----GLTADKLKSI 258 (318)
Q Consensus 189 ~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~------gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~ 258 (318)
++|+|++|.|.|+|||...+..||++|+.++++|++. .|..+.+...++..+...+.+.+ .+++.++.+.
T Consensus 130 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltg~~i~A~eA~~~ 209 (298)
T 3qre_A 130 RKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQL 209 (298)
T ss_dssp SSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHT
T ss_pred CCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHc
Confidence 8999999999999999999888999999999998883 34444455555555555555554 4899999999
Q ss_pred CCcceeec
Q psy14493 259 GLINKIIK 266 (318)
Q Consensus 259 G~vD~ii~ 266 (318)
|+||+|++
T Consensus 210 GLV~~vv~ 217 (298)
T 3qre_A 210 GLVKEVVT 217 (298)
T ss_dssp TSCSEEEC
T ss_pred CCCeEecC
Confidence 99999996
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-08 Score=93.24 Aligned_cols=139 Identities=14% Similarity=0.228 Sum_probs=97.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhhc------h-HHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEERG------Q-SEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~g------~-~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
...+++....+.+.++++.+++ ..+-+|.|.-.++++. |-....+. . .......+..+..+++|+|++|.|
T Consensus 30 ~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 109 (263)
T 3moy_A 30 ALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVAG 109 (263)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHHHHHTTTTHHHHHHTTCCSCEEEEECB
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchhHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 4478999999999999987765 4577777766444333 11111110 0 111223456678889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|||...+..||++|+.++++|++ +-|..+.+..+++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 110 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~ 187 (263)
T 3moy_A 110 YALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVP 187 (263)
T ss_dssp EEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEEC
T ss_pred EeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecC
Confidence 99999999988899999999999887 234444444444444444555544 589999999999999996
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.1e-08 Score=90.10 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=98.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEecC-C-----CCCCchh----HH-hhchHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDT-P-----GAFPGID----AE-ERGQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs-~-----Ga~~~~~----~e-~~g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
.+++......+.++++.+.+. .+-+|.|.-. + |..+.+- .+ ...........+..+..+++|+|++|.
T Consensus 26 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 105 (260)
T 1sg4_A 26 NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAIN 105 (260)
T ss_dssp TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 678999999999999887655 4777777665 3 3332211 00 011112344556678888999999999
Q ss_pred CCCchhhhhhhccccEEEEE--cccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 198 GEGGSGGALAIAVSDITLML--QYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~--~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|||...+..||++||. ++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||+++
T Consensus 106 G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~llltg~~~~a~eA~~~GLv~~vv 185 (260)
T 1sg4_A 106 GACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVV 185 (260)
T ss_dssp EEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSEEE
T ss_pred CeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCCEec
Confidence 99999999998889999999 8888766 345555555555545555555543 48999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 186 ~ 186 (260)
T 1sg4_A 186 P 186 (260)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-08 Score=93.13 Aligned_cols=139 Identities=19% Similarity=0.163 Sum_probs=97.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCC------CCCCchhH-----HhhchHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTP------GAFPGIDA-----EERGQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~------Ga~~~~~~-----e~~g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++......+.++++.+.+ ..+-+|.|.-.+ |..+.+-. +...........+..+..+++|+|++
T Consensus 32 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 111 (272)
T 1hzd_A 32 GKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAA 111 (272)
T ss_dssp GTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccChHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3468899999999999988765 456777776543 33332100 00111123445566788889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEEe------ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSVI------SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v~------gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|||...+..||++||.++++|++- .|..+....+++..+...+.+.+ .+++.++.+.|+||+++
T Consensus 112 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv 191 (272)
T 1hzd_A 112 IDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVL 191 (272)
T ss_dssp ESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEE
T ss_pred eCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCcceec
Confidence 999999999999888999999999998872 34444444444444444454543 48999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 192 ~ 192 (272)
T 1hzd_A 192 E 192 (272)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.7e-08 Score=91.06 Aligned_cols=136 Identities=12% Similarity=0.067 Sum_probs=97.8
Q ss_pred CCCHHHHHHHHHHHHHHHh------CCCcEEEEecCCCCCCc-hhHHhhc-------------hHHHHHHHHHHH---hc
Q psy14493 131 MAKPEGYRKAVRLMHIAEK------FNLPIFTFIDTPGAFPG-IDAEERG-------------QSEAIGHSIYVM---SK 187 (318)
Q Consensus 131 ~~~~~~~~K~~r~~~~A~~------~~lPiV~lvDs~Ga~~~-~~~e~~g-------------~~~~~~~~~~~~---s~ 187 (318)
+++....+.+..+++.+.+ ..+-+|.|.-.++++.. -....+. ........+..+ ..
T Consensus 59 al~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (305)
T 3m6n_A 59 CFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLG 138 (305)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred CCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7889999999998887764 46778888766555542 1111110 111222333333 34
Q ss_pred CCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHH
Q psy14493 188 LKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKS 257 (318)
Q Consensus 188 ~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~ 257 (318)
+++|+|++|.|.|+|||...+..||++||.++++|++ +.|..+....+.+..+...+.+.+ .+++.++.+
T Consensus 139 ~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~ 218 (305)
T 3m6n_A 139 ARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLG 218 (305)
T ss_dssp TTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHTTTSCHHHHHHHHHHCCEEEHHHHHH
T ss_pred CCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCccHHHHHHHHhcHHHHHHHHHcCCCCCHHHHHH
Confidence 6899999999999999999988899999999999887 345555556666666665666654 589999999
Q ss_pred cCCcceeec
Q psy14493 258 IGLINKIIK 266 (318)
Q Consensus 258 ~G~vD~ii~ 266 (318)
.|+||++++
T Consensus 219 ~GLv~~vv~ 227 (305)
T 3m6n_A 219 MGLVDRVVP 227 (305)
T ss_dssp HTSCSEEEC
T ss_pred CCCCCEecC
Confidence 999999997
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-08 Score=92.91 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=99.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC------CCCCchhHHh----------hchHHHHHHHHHHHhcCCCCE
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP------GAFPGIDAEE----------RGQSEAIGHSIYVMSKLKVPL 192 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~------Ga~~~~~~e~----------~g~~~~~~~~~~~~s~~~vP~ 192 (318)
.+++....+.+..+++.+.+. .+-+|.|.-.+ |..+.+-... ..........+..+..+++|+
T Consensus 30 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 109 (287)
T 3gkb_A 30 NVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVT 109 (287)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHHCSSEE
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 789999999999999887654 57777776543 2333221100 000112344566777889999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEc-ccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCc
Q psy14493 193 ISTIIGEGGSGGALAIAVSDITLMLQ-YAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLI 261 (318)
Q Consensus 193 IavV~G~~~ggga~~~~~~D~via~~-~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~v 261 (318)
|++|.|.|+|||...+..||++|+.+ +++|++ +.|..+.+..+++..+...+.+.+ .+++.++.+.|+|
T Consensus 110 IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV 189 (287)
T 3gkb_A 110 IVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWI 189 (287)
T ss_dssp EEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSS
T ss_pred EEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCC
Confidence 99999999999999988899999999 899887 345555555555555655666654 5899999999999
Q ss_pred ceeec
Q psy14493 262 NKIIK 266 (318)
Q Consensus 262 D~ii~ 266 (318)
|+|++
T Consensus 190 ~~vv~ 194 (287)
T 3gkb_A 190 NRALP 194 (287)
T ss_dssp SEEEC
T ss_pred cEEeC
Confidence 99996
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=98.87 E-value=4.4e-08 Score=89.06 Aligned_cols=136 Identities=17% Similarity=0.160 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHh---------hchHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEE---------RGQSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~---------~g~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
.+++....+.+..+++.+++. .+-+|.|.-.++++. |..... ..........+..+..+++|+|++|.|
T Consensus 38 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 117 (257)
T 1szo_A 38 LVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNG 117 (257)
T ss_dssp CEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 468899999999999887654 577787776544333 111110 011122345566777889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE-------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV-------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v-------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|+ ||......||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||+|++
T Consensus 118 ~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~ 195 (257)
T 1szo_A 118 PVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLS 195 (257)
T ss_dssp CBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEEEC
T ss_pred chH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCceEEeC
Confidence 999 5777777799999999999887 345444444444444544555543 489999999999999996
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-08 Score=93.28 Aligned_cols=137 Identities=18% Similarity=0.169 Sum_probs=99.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCC-C-----CCchhHHhh--------chHHHHHHHHHHHhcCCCCEEE
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPG-A-----FPGIDAEER--------GQSEAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~G-a-----~~~~~~e~~--------g~~~~~~~~~~~~s~~~vP~Ia 194 (318)
.+++....+.+.++++.+.+. .+-+|.|.-.++ + .+.+-.... .........+..+..+++|+|+
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 108 (289)
T 3h0u_A 29 NLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIA 108 (289)
T ss_dssp CCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 689999999999999887654 567777765442 2 222111100 0112344566778889999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcc-cEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQY-AIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~-A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
+|.|.|.|||...+..||++|+.++ ++|++ +.|..+.+...++..+...+.+.+ .+++.++.+.|+||+
T Consensus 109 aV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~ 188 (289)
T 3h0u_A 109 KLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNR 188 (289)
T ss_dssp EECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSE
T ss_pred EECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccE
Confidence 9999999999999888999999998 99887 345555555555555555555554 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 189 vv~ 191 (289)
T 3h0u_A 189 AVP 191 (289)
T ss_dssp EEC
T ss_pred ecC
Confidence 996
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=98.86 E-value=3.9e-08 Score=92.68 Aligned_cols=150 Identities=13% Similarity=0.085 Sum_probs=103.3
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCCc-hhHHhh----------
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFPG-IDAEER---------- 172 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~~-~~~e~~---------- 172 (318)
.+|.-..|.-|.+. ...+++......+..+++.++. ..+-+|.|.-.++++.. .....+
T Consensus 41 ~~~~Va~ItLnrP~---------~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~ 111 (333)
T 3njd_A 41 VTDRVARITFNRPE---------KGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGGG 111 (333)
T ss_dssp EETTEEEEEECCGG---------GTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC--------------
T ss_pred EECCEEEEEeCCCC---------ccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhcccccccc
Confidence 34554445555554 4568999999999999988765 46788888776654442 111100
Q ss_pred -----------------------------chHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEE
Q psy14493 173 -----------------------------GQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYS 223 (318)
Q Consensus 173 -----------------------------g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~ 223 (318)
.........+..+..+++|+|+.|.|.|+|||...+..||++||.++++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f~ 191 (333)
T 3njd_A 112 SPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIG 191 (333)
T ss_dssp -CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCEEE
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCeee
Confidence 011223334456777899999999999999999998899999999999887
Q ss_pred Ee------ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 224 VI------SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 224 v~------gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+. -|..+ .+....+...+.+.+ .+++.++++.|+||+|++
T Consensus 192 ~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~ 241 (333)
T 3njd_A 192 YPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPD 241 (333)
T ss_dssp CGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCC
T ss_pred chhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecC
Confidence 72 12221 223334445555554 489999999999999996
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D | Back alignment and structure |
|---|
Probab=98.85 E-value=7.4e-08 Score=87.89 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=94.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC-----CCCCchh-----HHh-hchHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP-----GAFPGID-----AEE-RGQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~-----Ga~~~~~-----~e~-~g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
.+++....+.+.++++.+++. .+-+|.|.-.+ |+.+.+- .+. ..........+..+..+++|+|++|.
T Consensus 46 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 125 (263)
T 2j5g_A 46 LVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVN 125 (263)
T ss_dssp CEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 468899999999999877654 57777776533 3333221 010 01122234556677888999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE-------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV-------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v-------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|+ ||...+..||++|+.++++|++ +.|..+.+..+++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 126 G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~ 204 (263)
T 2j5g_A 126 GAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLP 204 (263)
T ss_dssp SEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCEEHHHHHHTTSCSEEEC
T ss_pred Ccch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEecC
Confidence 9999 6777777899999999998876 334444444444444444444543 489999999999999996
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.3e-08 Score=91.65 Aligned_cols=139 Identities=16% Similarity=0.169 Sum_probs=96.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC------CCCCchhHH--h---hch-HHHHHHHHHHHhcCCCCEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP------GAFPGIDAE--E---RGQ-SEAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~------Ga~~~~~~e--~---~g~-~~~~~~~~~~~s~~~vP~Ia 194 (318)
...+++......+.++++.+.+. .+-+|.|.-.+ |..+.+-.+ . ... .......+..+..+++|+|+
T Consensus 33 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 112 (273)
T 2uzf_A 33 VRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIA 112 (273)
T ss_dssp GTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------CCSSSCCCTHHHHHHHHHHSSSCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccchhhhHHHhhHHHHHHHHHhCCCCEEE
Confidence 44689999999999999887654 56777775433 444432111 0 000 00123445566778899999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
+|.|.|.|||...+..||++|+.++++|++ +.|..+.+..+.+..+...+.+.+ .+++.++.+.|+||++
T Consensus 113 av~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v 192 (273)
T 2uzf_A 113 MVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTV 192 (273)
T ss_dssp EECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHHHHHHHHTCCCEEHHHHHHHTSSSEE
T ss_pred EECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCccc
Confidence 999999999999988899999999999887 334444444444444544555543 4899999999999999
Q ss_pred ec
Q psy14493 265 IK 266 (318)
Q Consensus 265 i~ 266 (318)
++
T Consensus 193 v~ 194 (273)
T 2uzf_A 193 VP 194 (273)
T ss_dssp EC
T ss_pred cC
Confidence 96
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=93.37 Aligned_cols=153 Identities=17% Similarity=0.160 Sum_probs=105.0
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhhchH-------
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEERGQS------- 175 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~g~~------- 175 (318)
.+|.-..|.-|.|. ...+++......+.++++.+++ ..+-+|.|.-.+..+. |.....+...
T Consensus 15 ~~~~v~~itlnrp~---------~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 85 (265)
T 3swx_A 15 RDGYVLVIGLNRPA---------KRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGASL 85 (265)
T ss_dssp EETTEEEEEECCGG---------GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--CCC
T ss_pred EECCEEEEEECCCc---------ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchhHH
Confidence 34444444555554 4578999999999999988765 4577888876655443 2221111110
Q ss_pred --HHHHHHHHHH-hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHH
Q psy14493 176 --EAIGHSIYVM-SKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAE 246 (318)
Q Consensus 176 --~~~~~~~~~~-s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e 246 (318)
......+..+ ..+++|+|+.|.|.|.|||......||++|+.++++|++ +-|..+....+.+..+...+.+
T Consensus 86 ~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~ 165 (265)
T 3swx_A 86 TPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMR 165 (265)
T ss_dssp CCTTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHHHHHH
Confidence 0001122334 567899999999999999999988899999999999887 2344445554555555555556
Q ss_pred Hh----cccHHHHHHcCCcceeec
Q psy14493 247 AL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 247 ~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.+ .+++.++.+.|+||++++
T Consensus 166 l~ltg~~~~a~eA~~~GLv~~vv~ 189 (265)
T 3swx_A 166 WMLTADTFDAVEAHRIGIVQEIVP 189 (265)
T ss_dssp HHTTCCCEEHHHHHHTTSCSEEES
T ss_pred HHHcCCcCCHHHHHHcCCCCEecC
Confidence 54 489999999999999997
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-08 Score=94.37 Aligned_cols=139 Identities=18% Similarity=0.207 Sum_probs=97.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC------------CCCCchhHHh----------------hchHHHH
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP------------GAFPGIDAEE----------------RGQSEAI 178 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~------------Ga~~~~~~e~----------------~g~~~~~ 178 (318)
...+++....+.+.++++.+++. .+-+|.|.-.+ |..+.+-... ......+
T Consensus 77 ~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (334)
T 3t8b_A 77 VRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHI 156 (334)
T ss_dssp GTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC----------------------CCH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcccccccccccchhhhHHHHHHHHH
Confidence 45789999999999999887754 57777776544 2233211000 0000123
Q ss_pred HHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEE-cccEEEEe------ChhHHHHhhhccccchHHHHHHh---
Q psy14493 179 GHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLML-QYAIYSVI------SPEGCASILWKTSKRASDAAEAL--- 248 (318)
Q Consensus 179 ~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~-~~A~i~v~------gP~~~a~il~~~~~~~~~a~e~~--- 248 (318)
...+..+..+++|+|++|.|.|+|||...+..||++||. ++++|++. -|.++.+..+.+..+...+.+.+
T Consensus 157 ~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~~gg~~~L~r~vG~~~A~ellltG 236 (334)
T 3t8b_A 157 LEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLG 236 (334)
T ss_dssp HHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSCCSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCcccHHHHHHHHhhHHHHHHHHHhC
Confidence 345566778899999999999999999998889999999 99998873 24443344444445555555554
Q ss_pred -cccHHHHHHcCCcceeec
Q psy14493 249 -GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 -~~~a~~a~~~G~vD~ii~ 266 (318)
.+++.++++.|+|++|++
T Consensus 237 ~~i~A~eA~~~GLV~~vv~ 255 (334)
T 3t8b_A 237 RTYTAEQMHQMGAVNAVAE 255 (334)
T ss_dssp CEEEHHHHHHHTSCSEEEC
T ss_pred CcCCHHHHHHCCCCcEecC
Confidence 489999999999999997
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A | Back alignment and structure |
|---|
Probab=98.84 E-value=5e-08 Score=90.17 Aligned_cols=139 Identities=14% Similarity=0.205 Sum_probs=96.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCC------CCCCchhHH------hhch-HHHHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTP------GAFPGIDAE------ERGQ-SEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~------Ga~~~~~~e------~~g~-~~~~~~~~~~~s~~~vP~I 193 (318)
...+++......+.++++.++. ..+-+|.|.-.+ |+.+..-.. .... .......+..+..+++|+|
T Consensus 48 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 127 (289)
T 3t89_A 48 VRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVV 127 (289)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------------CTHHHHHHHHHHCSSCEE
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchhhhHHHHHHHHHHHHHHHcCCCCEE
Confidence 4578999999999999988765 457788777655 233321110 0000 0123445666778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEEe----C--hhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSVI----S--PEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v~----g--P~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|.|||...+..||++|+.++++|++. | |.++....+.+..+...+.+.+ .+++.++.+.|+||+
T Consensus 128 AaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~ 207 (289)
T 3t89_A 128 AMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNT 207 (289)
T ss_dssp EEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSE
T ss_pred EEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCHHHHHHHHHcCCcccHHHHHHCCCceE
Confidence 99999999999999888999999999998872 2 2222233334444555555554 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 208 vv~ 210 (289)
T 3t89_A 208 VVP 210 (289)
T ss_dssp EEC
T ss_pred eeC
Confidence 997
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.2e-08 Score=90.80 Aligned_cols=139 Identities=15% Similarity=0.208 Sum_probs=95.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEec-----CC------CCCCchhHHh-----hchH-HHHHHHHHHHhcCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFID-----TP------GAFPGIDAEE-----RGQS-EAIGHSIYVMSKLK 189 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvD-----s~------Ga~~~~~~e~-----~g~~-~~~~~~~~~~s~~~ 189 (318)
...+++......+.++++.+++ ..+-+|.|.- .+ |..+.+-... .... ......+..+..++
T Consensus 30 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (275)
T 4eml_A 30 KRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMP 109 (275)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC--------------CCCHHHHHHHHHHSS
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccccchhhHHHHHHHHHHHHHHhCC
Confidence 4578999999999999988765 4577777766 33 2333221110 0000 01334556677889
Q ss_pred CCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEe----C--hhHHHHhhhccccchHHHHHHh----cccHHHHHHcC
Q psy14493 190 VPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVI----S--PEGCASILWKTSKRASDAAEAL----GLTADKLKSIG 259 (318)
Q Consensus 190 vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~----g--P~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G 259 (318)
+|+|++|.|.|.|||...+..||++||.++++|++. | |.++....+.+..+...+.+.+ .+++.++.+.|
T Consensus 110 kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~vG~~~A~~llltg~~i~A~eA~~~G 189 (275)
T 4eml_A 110 KVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMG 189 (275)
T ss_dssp SEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHT
T ss_pred CCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcC
Confidence 999999999999999998888999999999998872 2 2222233334444555555554 58999999999
Q ss_pred Ccceeec
Q psy14493 260 LINKIIK 266 (318)
Q Consensus 260 ~vD~ii~ 266 (318)
+|++|++
T Consensus 190 Lv~~vv~ 196 (275)
T 4eml_A 190 MVNTVVP 196 (275)
T ss_dssp SCSEEEC
T ss_pred CccEeeC
Confidence 9999997
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.3e-09 Score=93.82 Aligned_cols=153 Identities=15% Similarity=0.180 Sum_probs=105.0
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhhch--------
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEERGQ-------- 174 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~g~-------- 174 (318)
.+|.-..|.-|.|. ...+++....+.+.++++.+++ ..+-+|.|.-.++.+. |.....+..
T Consensus 18 ~~~~v~~itlnrp~---------~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 88 (258)
T 3lao_A 18 QRGHLFLIGLDRAG---------KRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASGFR 88 (258)
T ss_dssp EETTEEEEEECCGG---------GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTBCC
T ss_pred EECCEEEEEEcCCC---------ccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhhHH
Confidence 34544444455554 4478999999999999988765 4578888877665443 221111100
Q ss_pred -HHHHHHHHHHH-hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHH
Q psy14493 175 -SEAIGHSIYVM-SKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAE 246 (318)
Q Consensus 175 -~~~~~~~~~~~-s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e 246 (318)
.......+..+ ..+++|+|+.|.|.|.|||......||++|+.++++|++ +.|..+.+...++..+...+.+
T Consensus 89 ~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~ 168 (258)
T 3lao_A 89 YPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMR 168 (258)
T ss_dssp CCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 01111223445 677899999999999999999988899999999999887 3344444444444455555555
Q ss_pred Hh----cccHHHHHHcCCcceeec
Q psy14493 247 AL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 247 ~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.+ .+++.++.+.|+||++++
T Consensus 169 l~ltg~~~~a~eA~~~Glv~~vv~ 192 (258)
T 3lao_A 169 YILTGDEFDADEALRMRLLTEVVE 192 (258)
T ss_dssp HHTTCCCEEHHHHHHTTSCSEEEC
T ss_pred HHHcCCCCCHHHHHHcCCCcEeeC
Confidence 54 479999999999999997
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.2e-08 Score=94.26 Aligned_cols=138 Identities=11% Similarity=0.010 Sum_probs=101.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC------CCCCchhHHh------------hchHHHHHHHHHHHhcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP------GAFPGIDAEE------------RGQSEAIGHSIYVMSKL 188 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~------Ga~~~~~~e~------------~g~~~~~~~~~~~~s~~ 188 (318)
...+++....+.+.++++.+.+. .+-+|.|.-.+ |..+..-... ..........+..+..+
T Consensus 62 ~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 141 (407)
T 3ju1_A 62 ALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTY 141 (407)
T ss_dssp GTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHC
Confidence 45789999999999999887654 56777776654 3333221110 00112234556678889
Q ss_pred CCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHc
Q psy14493 189 KVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSI 258 (318)
Q Consensus 189 ~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~ 258 (318)
++|+|++|.|.|.|||...+..||++|+.++++|++ +-|..+.+...++..+ ..+.+.+ .+++.++.+.
T Consensus 142 ~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~g-~~A~~l~ltG~~i~A~eA~~~ 220 (407)
T 3ju1_A 142 GKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG-KMGLFLGLTAYHMNAADACYV 220 (407)
T ss_dssp SSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSST-THHHHHHHHCCCBCHHHHHHH
T ss_pred CCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhhH-HHHHHHHHcCCcCcHHHHHHC
Confidence 999999999999999999988899999999999887 4566666666666555 4455543 5899999999
Q ss_pred CCcceeec
Q psy14493 259 GLINKIIK 266 (318)
Q Consensus 259 G~vD~ii~ 266 (318)
|+|+++++
T Consensus 221 GLv~~vv~ 228 (407)
T 3ju1_A 221 GLADHYLN 228 (407)
T ss_dssp TSCSEECC
T ss_pred CCccEEcC
Confidence 99999997
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-08 Score=92.17 Aligned_cols=138 Identities=19% Similarity=0.209 Sum_probs=97.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhhchH----------------HHHHHHHHHHhcCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEERGQS----------------EAIGHSIYVMSKLK 189 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~g~~----------------~~~~~~~~~~s~~~ 189 (318)
...+++......+..+++.+.+ ..+-+|.|.-.++++. |.....+... ......+..+..++
T Consensus 31 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (274)
T 3tlf_A 31 ALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMA 110 (274)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CTTCSGGGGSCCCTTCCCTTSCC
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccchhhHHHHHHHHHHHHHHHHhCC
Confidence 4578999999999999988765 4577787766544332 1111111000 00112233456678
Q ss_pred CCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh------cccHHHHHH
Q psy14493 190 VPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL------GLTADKLKS 257 (318)
Q Consensus 190 vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~------~~~a~~a~~ 257 (318)
+|+|++|.|.|.|||...+..||++|+.++++|++ +.| .+.+....+..+...+.+.+ .+++.++.+
T Consensus 111 kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG~~~A~~l~ltg~~~~~~A~eA~~ 189 (274)
T 3tlf_A 111 KPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLPRSIALRMALMGKHERMSAQRAYE 189 (274)
T ss_dssp SCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSCHHHHHHHHHHGGGCCEEHHHHHH
T ss_pred CCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhCHHHHHHHHHcCCCCccCHHHHHH
Confidence 99999999999999999988899999999999887 356 55566666666655555543 479999999
Q ss_pred cCCcceeec
Q psy14493 258 IGLINKIIK 266 (318)
Q Consensus 258 ~G~vD~ii~ 266 (318)
.|+||++++
T Consensus 190 ~GLv~~vv~ 198 (274)
T 3tlf_A 190 LGLISEIVE 198 (274)
T ss_dssp HTSSSEEEC
T ss_pred CCCCCeecC
Confidence 999999996
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-08 Score=87.91 Aligned_cols=130 Identities=16% Similarity=0.095 Sum_probs=90.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhh
Q psy14493 127 RNFGMAKPEGYRKAVRLMHIAEK--FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGG 204 (318)
Q Consensus 127 ~~gG~~~~~~~~K~~r~~~~A~~--~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggg 204 (318)
+.+|.+++..+..+.+.+..+.+ ..-+|+..+||||..+... ..++. .+...+.|+++++.|.|+++|
T Consensus 31 ~l~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~a~-------~~I~~---~i~~~~~pV~~~v~g~AaS~g 100 (208)
T 2cby_A 31 FLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAG-------MAIYD---TMVLAPCDIATYAMGMAASMG 100 (208)
T ss_dssp EECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHH-------HHHHH---HHHHCSSCEEEEEEEEEETHH
T ss_pred EEcCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCHHHH-------HHHHH---HHHhcCCCEEEEECcEeHHHH
Confidence 56788899999999998877654 3579999999999754321 23333 344456899999999999999
Q ss_pred hhhhccccE--EEEEcccEEEEeChhHHHHhhhccc-----------------------cchHHHHHHh----cccHHHH
Q psy14493 205 ALAIAVSDI--TLMLQYAIYSVISPEGCASILWKTS-----------------------KRASDAAEAL----GLTADKL 255 (318)
Q Consensus 205 a~~~~~~D~--via~~~A~i~v~gP~~~a~il~~~~-----------------------~~~~~a~e~~----~~~a~~a 255 (318)
++.+..||. ++|.|++.+++..|.+...=-..+. ...++..+.+ .+++.+|
T Consensus 101 ~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA 180 (208)
T 2cby_A 101 EFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEA 180 (208)
T ss_dssp HHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHH
T ss_pred HHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCcEEcHHHH
Confidence 999988998 8999999999988764311000000 0001111111 2699999
Q ss_pred HHcCCcceeec
Q psy14493 256 KSIGLINKIIK 266 (318)
Q Consensus 256 ~~~G~vD~ii~ 266 (318)
.+.|+||+|..
T Consensus 181 ~e~GLvD~i~~ 191 (208)
T 2cby_A 181 LEYGFVDHIIT 191 (208)
T ss_dssp HHHTSCSEECS
T ss_pred HHcCCCcEecC
Confidence 99999999997
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-08 Score=92.96 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=96.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCCc-hhHHhhch-----H--HHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFPG-IDAEERGQ-----S--EAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~~-~~~e~~g~-----~--~~~~~~~~~~s~~~vP~IavV~G 198 (318)
...+++......+.++++.+.+. .+-+|.|.-.++++.. -....+.. . .........+..+++|+|+.|.|
T Consensus 31 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G 110 (262)
T 3r9q_A 31 ARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHPHGPGPMGPSRLRLSKPVIAAISG 110 (262)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCCCCTTSSCTTSSTTCCCSSCEEEEECS
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhhHHHhhhhHHHHHHHhCCCCEEEEECC
Confidence 45789999999999999887654 5778888765554431 11111100 0 00001112234678999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|||...+..||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++++.|+||++++
T Consensus 111 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~ 188 (262)
T 3r9q_A 111 HAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVA 188 (262)
T ss_dssp EEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEEC
T ss_pred eeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEecC
Confidence 99999999988899999999999887 344444444455555555555554 589999999999999997
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.8e-08 Score=92.59 Aligned_cols=138 Identities=10% Similarity=0.030 Sum_probs=99.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC-CCCC-chhHHhh------------chHHHHHHHHHHHhcCCCCE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP-GAFP-GIDAEER------------GQSEAIGHSIYVMSKLKVPL 192 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~-Ga~~-~~~~e~~------------g~~~~~~~~~~~~s~~~vP~ 192 (318)
...+++......+.++++.+... .+-+|.|.-.+ +++. |.....+ .........+..+..+++|+
T Consensus 26 ~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 105 (363)
T 3bpt_A 26 FLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPY 105 (363)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTCSSCE
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 34689999999999999877654 57788887654 2322 2111110 01122334556788899999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcc
Q psy14493 193 ISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLIN 262 (318)
Q Consensus 193 IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD 262 (318)
|++|.|.|.|||...+..||++|+.++++|++ +.|..+.+...++..+. .+.+.+ .+++.++.+.|+|+
T Consensus 106 IAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~a~~l~ltg~~i~A~eA~~~GLv~ 184 (363)
T 3bpt_A 106 VALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-LGYFLALTGFRLKGRDVYRAGIAT 184 (363)
T ss_dssp EEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-HHHHHHHHCCCEETHHHHHTTSCS
T ss_pred EEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-HHHHHHHcCCCCCHHHHHHCCCcc
Confidence 99999999999999988899999999999887 34555555555554443 444443 58999999999999
Q ss_pred eeec
Q psy14493 263 KIIK 266 (318)
Q Consensus 263 ~ii~ 266 (318)
++++
T Consensus 185 ~vv~ 188 (363)
T 3bpt_A 185 HFVD 188 (363)
T ss_dssp EECC
T ss_pred eecC
Confidence 9996
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.7e-08 Score=88.25 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=96.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhhchH-----HHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEERGQS-----EAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~g~~-----~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
...+++......+.++++.+++. .+-+|.|.-.++++. |.....+... ...+ .+..+ ..++|+|++|.|.|
T Consensus 27 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~-~~~~~-~~~kPvIAav~G~a 104 (256)
T 3trr_A 27 ARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERGL-GFTNV-PPRKPIIAAVEGFA 104 (256)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEETTEE-TTSSS-CCSSCEEEEECSBC
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhhhhh-hHHHh-cCCCCEEEEECCee
Confidence 45789999999999999887654 578888876555444 2221111000 0000 11223 66899999999999
Q ss_pred chhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 201 GSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 201 ~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|||...+..||++|+.++++|++ +-|..+......+..+...+.+.+ .+++.++++.|+||++++
T Consensus 105 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~ 180 (256)
T 3trr_A 105 LAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVD 180 (256)
T ss_dssp CTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHGGGTCCSEEEC
T ss_pred eechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCeeEecC
Confidence 999999988899999999998876 234444444445545555555554 589999999999999997
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.5e-08 Score=88.26 Aligned_cols=152 Identities=14% Similarity=0.174 Sum_probs=101.1
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCCc-hhHHhhchHH----HH
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFPG-IDAEERGQSE----AI 178 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~~-~~~e~~g~~~----~~ 178 (318)
.+|.-..|.-|.+. ...+++....+.+.++++.+.+ ..+-+|.|.-.+.++.. .....+.... ..
T Consensus 21 ~~~~v~~itlnrp~---------~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 91 (265)
T 3qxi_A 21 QRDRILIITINRPK---------AKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVEG 91 (265)
T ss_dssp EETTEEEEEECCGG---------GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEETT
T ss_pred EECCEEEEEECCCC---------cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhhhh
Confidence 34444444555554 4478999999999999988765 45778888766554442 1111110000 00
Q ss_pred HH-HHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh---
Q psy14493 179 GH-SIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL--- 248 (318)
Q Consensus 179 ~~-~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~--- 248 (318)
.. .+..+.. ++|+|++|.|.|+|||...+..||++|+.++++|++ +.|..+......+..+...+.+.+
T Consensus 92 ~~~~~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg 170 (265)
T 3qxi_A 92 RGLGFTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTG 170 (265)
T ss_dssp TEETTTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHC
T ss_pred hhhhHHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHHHHHHHcC
Confidence 00 0122223 699999999999999999988899999999999887 234444444445545555555554
Q ss_pred -cccHHHHHHcCCcceeec
Q psy14493 249 -GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 -~~~a~~a~~~G~vD~ii~ 266 (318)
.+++.++.+.|+||++++
T Consensus 171 ~~~~a~eA~~~GLv~~vv~ 189 (265)
T 3qxi_A 171 DNLSAERAHALGMVNVLAE 189 (265)
T ss_dssp CCEEHHHHHHTTSCSEEEC
T ss_pred CCcCHHHHHHCCCccEeeC
Confidence 589999999999999997
|
| >3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A | Back alignment and structure |
|---|
Probab=98.79 E-value=7.6e-08 Score=88.47 Aligned_cols=139 Identities=17% Similarity=0.134 Sum_probs=95.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCCc-hhHHhh-------c-------hHHHHHHHHHHHhcCCCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFPG-IDAEER-------G-------QSEAIGHSIYVMSKLKVP 191 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~~-~~~e~~-------g-------~~~~~~~~~~~~s~~~vP 191 (318)
...+++....+.+.++++.+++. .+-+|.|.-.++++.. -....+ . ........+..+..+++|
T Consensus 40 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 119 (279)
T 3t3w_A 40 AANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKP 119 (279)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHHHHHHHHHHHTHHHHHHHHHCSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45789999999999999887654 5788888776654441 110000 0 011223445667788999
Q ss_pred EEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHH----HHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 192 LISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGC----ASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 192 ~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~----a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
+|++|.|.|.|||...+..||++|+.++++|++-...-+ ....+++..+...+.+.+ .+++.++++.|+||+
T Consensus 120 vIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~~~~~~~~~~~vG~~~A~~llltG~~i~A~eA~~~GLv~~ 199 (279)
T 3t3w_A 120 SIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIGGVEYHGHTWELGPRKAKEILFTGRAMTAEEVAQTGMVNR 199 (279)
T ss_dssp EEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCSSCSSCCHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSE
T ss_pred EEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCCCchHHHHHhhcCHHHHHHHHHcCCccCHHHHHHCCCCcE
Confidence 999999999999999988899999999998876211100 011112233334444543 589999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 200 vv~ 202 (279)
T 3t3w_A 200 VVP 202 (279)
T ss_dssp EEC
T ss_pred eeC
Confidence 996
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.2e-08 Score=90.05 Aligned_cols=139 Identities=16% Similarity=0.110 Sum_probs=94.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC-----CCCCchhHHhh--chH-HHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP-----GAFPGIDAEER--GQS-EAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~-----Ga~~~~~~e~~--g~~-~~~~~~~~~~s~~~vP~IavV~G 198 (318)
...+++....+.+.++++.+++. .+-+|.|.-.+ |..+.+-.... ... ......+..+..+++|+|+.|.|
T Consensus 27 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 106 (260)
T 1mj3_A 27 ALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNG 106 (260)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEEECS
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 44789999999999999887654 56777776543 33332100000 000 01112234566778999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEEe------ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSVI------SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v~------gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|||......||++|+.++++|++- .|..+.+..+++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 107 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~ 184 (260)
T 1mj3_A 107 YALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFP 184 (260)
T ss_dssp EEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEEC
T ss_pred EEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEEeC
Confidence 999999999888999999999998872 34433333334434444454543 489999999999999996
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A | Back alignment and structure |
|---|
Probab=98.74 E-value=4.2e-08 Score=89.62 Aligned_cols=152 Identities=15% Similarity=0.132 Sum_probs=103.0
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCC-CCC-chhHHhhch-------
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPG-AFP-GIDAEERGQ------- 174 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~G-a~~-~~~~e~~g~------- 174 (318)
.+|.-..|.-|.|. ...+++......+..+++.+++. .+-+|.|.-.++ ++. |.....+..
T Consensus 15 ~~~~v~~itlnrP~---------~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 85 (267)
T 3r9t_A 15 RRGNVMVITINRPE---------ARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHP 85 (267)
T ss_dssp EETTEEEEEECCGG---------GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCT
T ss_pred EECCEEEEEEcCCc---------ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhH
Confidence 34444444455554 45789999999999999887654 577888866553 333 211111100
Q ss_pred --HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHH
Q psy14493 175 --SEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAE 246 (318)
Q Consensus 175 --~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e 246 (318)
.......+ ....+++|+|++|.|.|.|||......||++|+.++++|++ +.|..+.+...++..+...+.+
T Consensus 86 ~~~~~~~~~~-~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~ 164 (267)
T 3r9t_A 86 DHPEWGFAGY-VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMR 164 (267)
T ss_dssp TCGGGCGGGT-TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHHHH
T ss_pred HHHhHHHHHH-HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHHHH
Confidence 00000111 12267899999999999999999988899999999998876 3455555555555555555655
Q ss_pred Hh----cccHHHHHHcCCcceeec
Q psy14493 247 AL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 247 ~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.+ .+++.++.+.|+||+|++
T Consensus 165 l~ltg~~i~A~eA~~~GLv~~vv~ 188 (267)
T 3r9t_A 165 LLLTGEPLSAAAARDWGLINEVVE 188 (267)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEEC
T ss_pred HHHcCCCCCHHHHHHCCCccEEcC
Confidence 54 489999999999999997
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=98.72 E-value=8.1e-09 Score=94.28 Aligned_cols=138 Identities=18% Similarity=0.178 Sum_probs=96.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC-----CCchhHHh-----hchHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGA-----FPGIDAEE-----RGQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga-----~~~~~~e~-----~g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
...+++....+.+.++++.+.+. .+-+|.|.-.+++ .+.+-... ...... ...+..+..+++|+|++|
T Consensus 27 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~~l~~~~kPvIAav 105 (265)
T 3qxz_A 27 TRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNPDFSA-SPVQPAAFELRTPVIAAV 105 (265)
T ss_dssp GTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSSCCCS-CCSSSCGGGSSSCEEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHHHHHH-HHHHHHHHhCCCCEEEEE
Confidence 45789999999999999887654 5777777654433 22211000 000001 223345667789999999
Q ss_pred cCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|.|||...+..||++|+.++++|++ +-|..+....+.+..+...+.+.+ .+++.++.+.|+||++++
T Consensus 106 ~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~ 185 (265)
T 3qxz_A 106 NGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLP 185 (265)
T ss_dssp CSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSEEEC
T ss_pred CCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccEeeC
Confidence 9999999999988999999999999887 335554554545545544555544 589999999999999996
|
| >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=5.8e-08 Score=86.04 Aligned_cols=132 Identities=15% Similarity=0.131 Sum_probs=90.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHHH-hCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhh
Q psy14493 127 RNFGMAKPEGYRKAVRLMHIAE-KFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGA 205 (318)
Q Consensus 127 ~~gG~~~~~~~~K~~r~~~~A~-~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga 205 (318)
+.+|.+++..+..+.+.+..+. ...-||+..+||||..+... ..+.. .+...+.|+++++.|.|+++|+
T Consensus 43 ~l~G~I~~~~a~~i~~~L~~l~~~~~k~I~l~INSPGGsv~a~-------~~I~~---~i~~~~~pV~t~v~g~AAS~g~ 112 (215)
T 2f6i_A 43 YLTDEINKKTADELISQLLYLDNINHNDIKIYINSPGGSINEG-------LAILD---IFNYIKSDIQTISFGLVASMAS 112 (215)
T ss_dssp EECSCBCHHHHHHHHHHHHHHHHHCCSCEEEEEEECCBCHHHH-------HHHHH---HHHHSSSCEEEEEEEEECHHHH
T ss_pred EEccEECHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHH-------HHHHH---HHHhcCCCEEEEEeeEhHhHHH
Confidence 4678888888888888776554 33389999999999765322 22333 3444568999999999999999
Q ss_pred hhhccccE--EEEEcccEEEEeChhHHH-----Hhhhc-cc-----------------cchHHHHHHh----cccHHHHH
Q psy14493 206 LAIAVSDI--TLMLQYAIYSVISPEGCA-----SILWK-TS-----------------KRASDAAEAL----GLTADKLK 256 (318)
Q Consensus 206 ~~~~~~D~--via~~~A~i~v~gP~~~a-----~il~~-~~-----------------~~~~~a~e~~----~~~a~~a~ 256 (318)
|.+..+|. ++|.|++.+.+..|.+.. .+... +. ...++..+.+ .+++.+|.
T Consensus 113 ~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~~~lta~eA~ 192 (215)
T 2f6i_A 113 VILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAK 192 (215)
T ss_dssp HHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHH
T ss_pred HHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCeecCHHHHH
Confidence 99988999 999999999887664321 00000 00 0001111111 26999999
Q ss_pred HcCCcceeecCc
Q psy14493 257 SIGLINKIIKEP 268 (318)
Q Consensus 257 ~~G~vD~ii~~p 268 (318)
+.|+||+|...+
T Consensus 193 e~GLiD~I~~~~ 204 (215)
T 2f6i_A 193 QYGIIDEVIETK 204 (215)
T ss_dssp HHTSCSEECCCS
T ss_pred HCCCCCEecCCc
Confidence 999999999743
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.2e-07 Score=94.01 Aligned_cols=155 Identities=16% Similarity=0.189 Sum_probs=112.1
Q ss_pred EEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCCc-hhHHhhc---hHH
Q psy14493 102 LARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFPG-IDAEERG---QSE 176 (318)
Q Consensus 102 ~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~~-~~~e~~g---~~~ 176 (318)
+=+++|.-..|--|+|.+ .+++......+..+++.+++ ..+-+|.|.-.++++.. -....+. ...
T Consensus 24 ~~~~~~~Va~itlnrP~~----------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~~~~ 93 (742)
T 3zwc_A 24 YLRLPHSLAMIRLCNPPV----------NAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGL 93 (742)
T ss_dssp EEECSTTEEEEEECCTTT----------TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSCSCS
T ss_pred EEEeeCCEEEEEeCCCcc----------cCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccChhH
Confidence 346666555555566642 68999999999999988766 45778888776655441 1111111 111
Q ss_pred HHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh--
Q psy14493 177 AIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL-- 248 (318)
Q Consensus 177 ~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~-- 248 (318)
.....+..+..+++|+|++|.|.|.|||.-.+..||++|+.++++|++ +-|..+.+...++..+...+.+.+
T Consensus 94 ~~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~lt 173 (742)
T 3zwc_A 94 ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITS 173 (742)
T ss_dssp HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHc
Confidence 334556677788999999999999999999988899999999999887 345555555566666666666665
Q ss_pred --cccHHHHHHcCCcceeec
Q psy14493 249 --GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 --~~~a~~a~~~G~vD~ii~ 266 (318)
.+++.++++.|+||+|++
T Consensus 174 G~~i~a~eA~~~GLv~~vv~ 193 (742)
T 3zwc_A 174 GKYLSADEALRLGILDAVVK 193 (742)
T ss_dssp CCCEEHHHHHHHTSCSEEES
T ss_pred CCchhHHHHHHcCCccEecC
Confidence 489999999999999996
|
| >3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-07 Score=81.67 Aligned_cols=134 Identities=23% Similarity=0.263 Sum_probs=94.1
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIAEKF--NLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A~~~--~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
+++.+.+|.+++..+..+.+.+..+... .-||+..+||||..+..+ ..+. ..+...+.|+++++.|.|
T Consensus 27 ~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~~~-------~~I~---~~i~~~~~~V~t~~~G~A 96 (203)
T 3qwd_A 27 DRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAG-------FAIY---DTIQHIKPDVQTICIGMA 96 (203)
T ss_dssp TTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHH-------HHHH---HHHHHSSSCEEEEEEEEE
T ss_pred CCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHH-------HHHH---HHHHHhcCCcEEEEeeee
Confidence 4555789999999999999888776643 578999999999664322 2233 334455789999999999
Q ss_pred chhhhhhhcccc--EEEEEcccEEEEeChhHHH-----Hh------hhcccc------------chHHHHHHh----ccc
Q psy14493 201 GSGGALAIAVSD--ITLMLQYAIYSVISPEGCA-----SI------LWKTSK------------RASDAAEAL----GLT 251 (318)
Q Consensus 201 ~ggga~~~~~~D--~via~~~A~i~v~gP~~~a-----~i------l~~~~~------------~~~~a~e~~----~~~ 251 (318)
+++|++.+..+| .++|.|++.+.+--|.+.. .+ +.+... ..++..+.+ .++
T Consensus 97 aSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~~d~~lt 176 (203)
T 3qwd_A 97 ASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLT 176 (203)
T ss_dssp ETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHTSCCCEE
T ss_pred hhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhcCceec
Confidence 999999988888 6999999999886664311 00 000000 001111111 269
Q ss_pred HHHHHHcCCcceeec
Q psy14493 252 ADKLKSIGLINKIIK 266 (318)
Q Consensus 252 a~~a~~~G~vD~ii~ 266 (318)
+.+|.+.|+||+|+.
T Consensus 177 a~EA~e~GliD~I~~ 191 (203)
T 3qwd_A 177 AEEAKEYGLIDEVMV 191 (203)
T ss_dssp HHHHHHHTSCSEECC
T ss_pred HHHHHHcCCcCEecC
Confidence 999999999999997
|
| >1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.4e-07 Score=86.47 Aligned_cols=136 Identities=19% Similarity=0.262 Sum_probs=96.5
Q ss_pred cchhhccCCCCCHHHHHHHHHHHHHHH--hCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 122 NERIIRNFGMAKPEGYRKAVRLMHIAE--KFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 122 ~~~~~~~gG~~~~~~~~K~~r~~~~A~--~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
++++.+.+|.+++..+..+.+.+..+. ...-+|+..+||||..+..+ ..|.. .+.....|+++++.|.
T Consensus 81 ~erII~l~G~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPGGsV~ag-------~aIyd---~I~~~k~pV~t~v~G~ 150 (277)
T 1tg6_A 81 RERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAG-------LAIYD---TMQYILNPICTWCVGQ 150 (277)
T ss_dssp TTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHH-------HHHHH---HHHHSCSCEEEEEEEE
T ss_pred cCcEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHH-------HHHHH---HHHhcCCCEEEEEccE
Confidence 456668899999999999988887643 34689999999999765432 22333 3444568999999999
Q ss_pred CchhhhhhhccccE--EEEEcccEEEEeChhHHH-----Hhh--hcccc----------------chHHHHHHh----cc
Q psy14493 200 GGSGGALAIAVSDI--TLMLQYAIYSVISPEGCA-----SIL--WKTSK----------------RASDAAEAL----GL 250 (318)
Q Consensus 200 ~~ggga~~~~~~D~--via~~~A~i~v~gP~~~a-----~il--~~~~~----------------~~~~a~e~~----~~ 250 (318)
|+++|+|.++.+|. ++|.|++.+++..|.+.. .+. ..... ..++..+.+ .+
T Consensus 151 AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~drd~~l 230 (277)
T 1tg6_A 151 AASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYM 230 (277)
T ss_dssp EETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEE
T ss_pred eHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccc
Confidence 99999999988998 999999999998774321 110 00000 011111121 26
Q ss_pred cHHHHHHcCCcceeecC
Q psy14493 251 TADKLKSIGLINKIIKE 267 (318)
Q Consensus 251 ~a~~a~~~G~vD~ii~~ 267 (318)
++.+|++.|+||+|+..
T Consensus 231 ta~EAle~GLID~I~~~ 247 (277)
T 1tg6_A 231 SPMEAQEFGILDKVLVH 247 (277)
T ss_dssp CHHHHHHHTSCSEECSS
T ss_pred CHHHHHHCCCCCEecCc
Confidence 99999999999999974
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.8e-07 Score=91.32 Aligned_cols=138 Identities=9% Similarity=0.020 Sum_probs=96.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC--CCcEEEEec-CCC-----CCCchhHH-----hhchHHHHHHHHHHH----hcCCCC
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKF--NLPIFTFID-TPG-----AFPGIDAE-----ERGQSEAIGHSIYVM----SKLKVP 191 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~--~lPiV~lvD-s~G-----a~~~~~~e-----~~g~~~~~~~~~~~~----s~~~vP 191 (318)
..+++......+..+++.+... .+-+|.|.- .++ +.+..-.. .......+...+..+ ..+++|
T Consensus 52 ~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~el~~~~~~~~~~~~~~~~~l~~~L~~a~~~~pKP 131 (556)
T 2w3p_A 52 LNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLK 131 (556)
T ss_dssp TTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSCE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4678899999999998776544 677777766 333 33321100 000112233445566 778999
Q ss_pred EEEEEcCCCchhhhhhhccccEEEEEcc--cEEEEe-------ChhHHHHhhhc--cccchHHHHHHh----cccHHHHH
Q psy14493 192 LISTIIGEGGSGGALAIAVSDITLMLQY--AIYSVI-------SPEGCASILWK--TSKRASDAAEAL----GLTADKLK 256 (318)
Q Consensus 192 ~IavV~G~~~ggga~~~~~~D~via~~~--A~i~v~-------gP~~~a~il~~--~~~~~~~a~e~~----~~~a~~a~ 256 (318)
+|+.|.|.|.|||...+..||++|+.++ +.|++- -|..+.....+ +..+...+.+.+ .+++.+++
T Consensus 132 VIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl 211 (556)
T 2w3p_A 132 FLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAK 211 (556)
T ss_dssp EEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHH
T ss_pred EEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHH
Confidence 9999999999999999888999999999 888761 24444444444 455555555654 47999999
Q ss_pred HcCCcceeec
Q psy14493 257 SIGLINKIIK 266 (318)
Q Consensus 257 ~~G~vD~ii~ 266 (318)
+.|+||+|++
T Consensus 212 ~lGLVdeVVp 221 (556)
T 2w3p_A 212 AWRLVDEVVK 221 (556)
T ss_dssp HTTSCSEEEC
T ss_pred HCCCceEEeC
Confidence 9999999996
|
| >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.4e-07 Score=79.67 Aligned_cols=131 Identities=19% Similarity=0.197 Sum_probs=91.6
Q ss_pred hccCCCCCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchh
Q psy14493 126 IRNFGMAKPEGYRKAVRLMHIAEK--FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSG 203 (318)
Q Consensus 126 ~~~gG~~~~~~~~K~~r~~~~A~~--~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~gg 203 (318)
.+.+|.+++..+..+.+.++.+.+ ..-+|+..+||||..+... ..+.. .+...+.|+++++.|.|+++
T Consensus 29 i~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~a~-------~~I~~---~i~~~~~pV~~~v~g~AaS~ 98 (193)
T 1yg6_A 29 IFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAG-------MSIYD---TMQFIKPDVSTICMGQAASM 98 (193)
T ss_dssp EEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHH-------HHHHH---HHHHSSSCEEEEEEEEEETH
T ss_pred EEEcCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHH-------HHHHH---HHHhcCCCEEEEEeeeHHHH
Confidence 356788889899999988876643 4579999999999764322 22333 34445689999999999999
Q ss_pred hhhhhccccE--EEEEcccEEEEeChhHHH-----Hhh--hcccc----------------chHHHHHHh----cccHHH
Q psy14493 204 GALAIAVSDI--TLMLQYAIYSVISPEGCA-----SIL--WKTSK----------------RASDAAEAL----GLTADK 254 (318)
Q Consensus 204 ga~~~~~~D~--via~~~A~i~v~gP~~~a-----~il--~~~~~----------------~~~~a~e~~----~~~a~~ 254 (318)
|+|.+..+|. ++|.|++.+++..|.+.. .+. ..... ..++..+.+ .+++.+
T Consensus 99 g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~e 178 (193)
T 1yg6_A 99 GAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPE 178 (193)
T ss_dssp HHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHH
T ss_pred HHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCeEEcHHH
Confidence 9999988998 999999999987775321 110 00000 001111111 159999
Q ss_pred HHHcCCcceeec
Q psy14493 255 LKSIGLINKIIK 266 (318)
Q Consensus 255 a~~~G~vD~ii~ 266 (318)
|.+.|+||+|+.
T Consensus 179 A~~~GliD~i~~ 190 (193)
T 1yg6_A 179 AVEYGLVDSILT 190 (193)
T ss_dssp HHHHTSSSEECC
T ss_pred HHHcCCCCEecC
Confidence 999999999986
|
| >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.6e-07 Score=80.99 Aligned_cols=134 Identities=21% Similarity=0.255 Sum_probs=93.5
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIAEK--FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A~~--~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
+++.+.+|.+++..+..+.+.+..+.. ..-||+..+||||..+..+ ..+. ..+...+.|+++++.|.|
T Consensus 30 ~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~~-------~~I~---~~i~~~~~~v~t~~~G~A 99 (201)
T 3p2l_A 30 ERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAG-------MGVY---DTMQFIKPDVSTICIGLA 99 (201)
T ss_dssp TTEEEEESCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHH-------HHHH---HHHHHSSSCEEEEEEEEE
T ss_pred CCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHH-------HHHH---HHHHHhCCCeEEEEcCEe
Confidence 455578899999999999888876653 3579999999999654322 2233 334455689999999999
Q ss_pred chhhhhhhccccE--EEEEcccEEEEeChhHH-----HHhh------hcccc------------chHHHHHHh----ccc
Q psy14493 201 GSGGALAIAVSDI--TLMLQYAIYSVISPEGC-----ASIL------WKTSK------------RASDAAEAL----GLT 251 (318)
Q Consensus 201 ~ggga~~~~~~D~--via~~~A~i~v~gP~~~-----a~il------~~~~~------------~~~~a~e~~----~~~ 251 (318)
+++|++.+..+|. ++|.|++.+.+--|.+. ..+. ..... ..++..+.+ .++
T Consensus 100 aS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~~~~~~lt 179 (201)
T 3p2l_A 100 ASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMM 179 (201)
T ss_dssp ETHHHHHHHTSSTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEE
T ss_pred hhHHHHHHHcCccCCEEEcCCCeEEEeccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhhcCeeec
Confidence 9999999888887 99999999988766431 1110 00000 001111111 269
Q ss_pred HHHHHHcCCcceeec
Q psy14493 252 ADKLKSIGLINKIIK 266 (318)
Q Consensus 252 a~~a~~~G~vD~ii~ 266 (318)
+.+|.+.|+||+|+.
T Consensus 180 a~EA~e~GliD~I~~ 194 (201)
T 3p2l_A 180 ADEAKAYGLIDHVIE 194 (201)
T ss_dssp HHHHHHHTSCSEECC
T ss_pred HHHHHHcCCccEecC
Confidence 999999999999997
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-06 Score=89.77 Aligned_cols=137 Identities=14% Similarity=0.118 Sum_probs=99.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCC-CCC-chhHHhh------------chHHHHHHHHHHHhcCCCCEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPG-AFP-GIDAEER------------GQSEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~G-a~~-~~~~e~~------------g~~~~~~~~~~~~s~~~vP~I 193 (318)
-.+++....+.+..+++.+.+. .+-+|.|.- ++ ++. |-....+ .........+..+..+++|+|
T Consensus 29 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 107 (715)
T 1wdk_A 29 VNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTV 107 (715)
T ss_dssp SCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 3688999999999999887654 577777765 33 333 2111111 011234455667888899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|.|||...+..||++|+.++++|++ +-|..+.+...++..+...+.+.+ .+++.++++.|+||+
T Consensus 108 Aav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~~A~~l~ltG~~~~a~eA~~~GLv~~ 187 (715)
T 1wdk_A 108 AAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDA 187 (715)
T ss_dssp EEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSE
T ss_pred EEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceE
Confidence 9999999999999988899999999999877 345555555555555555555554 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 188 vv~ 190 (715)
T 1wdk_A 188 VVT 190 (715)
T ss_dssp EEC
T ss_pred EeC
Confidence 996
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=4.4e-07 Score=88.35 Aligned_cols=138 Identities=14% Similarity=0.160 Sum_probs=94.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecC--------C-CCCC-chhHHhhc-------h--HH----HHHHHHH
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDT--------P-GAFP-GIDAEERG-------Q--SE----AIGHSIY 183 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs--------~-Ga~~-~~~~e~~g-------~--~~----~~~~~~~ 183 (318)
...+++......+..+++.++. ..+-+|.|.-. + +++. |.....+. . .. .+...+.
T Consensus 187 k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (440)
T 2np9_A 187 RLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVR 266 (440)
T ss_dssp TTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTTCCCTTTTHHHHHHTHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhccCcchhhhhhHHHHHHHHHHHH
Confidence 4478999999999999988765 46788888763 2 2333 22111110 0 00 1112222
Q ss_pred HH------------hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHH
Q psy14493 184 VM------------SKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAA 245 (318)
Q Consensus 184 ~~------------s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~ 245 (318)
.+ ..+++|+|++|.|.|+|||...+..||++|+.++++|++ +.|..+. ..+.+..+...+.
T Consensus 267 ~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lGl~P~~g~-~~L~rlvG~~~A~ 345 (440)
T 2np9_A 267 GVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAAN-LRLGRFAGPRVSR 345 (440)
T ss_dssp CEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTCCCCTTHH-HHHHHHHHHHHHH
T ss_pred HHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccCcCcchHH-HHHHHHhhHHHHH
Confidence 22 256799999999999999999988899999999999887 3455543 3444445545555
Q ss_pred HHh----cccHHHHHHcCCcceeec
Q psy14493 246 EAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 246 e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+.+ .+++.++.+.|+||+|++
T Consensus 346 ellLtG~~i~A~EA~~~GLV~~Vvp 370 (440)
T 2np9_A 346 QVILEGRRIWAKEPEARLLVDEVVE 370 (440)
T ss_dssp HHHHHCCCEETTSGGGGGTCSEEEC
T ss_pred HHHHcCCCCCHHHHHHCCCCcEecC
Confidence 554 489999999999999996
|
| >4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.1e-06 Score=75.27 Aligned_cols=143 Identities=13% Similarity=0.158 Sum_probs=96.5
Q ss_pred cchhhccCCCCCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 122 NERIIRNFGMAKPEGYRKAVRLMHIAEK--FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 122 ~~~~~~~gG~~~~~~~~K~~r~~~~A~~--~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
++++.+.+|.+++..+..+..-+-+.+. ..-||...+||||.--.+..+..|...........+...+.|+.++++|.
T Consensus 27 ~~Riifl~~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~m~~~~~~V~t~~~G~ 106 (205)
T 4gm2_A 27 SKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGK 106 (205)
T ss_dssp TTTEEEECSCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHHHHHSSSCEEEEEEEE
T ss_pred cCCEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCEEEEEEee
Confidence 4566689999999999988877655443 35799999999993221111222333344444555666678999999999
Q ss_pred Cchhhhhhhcccc--EEEEEcccEEEEeChhHHHHhhhccccc----hHH----------------------HHHHh---
Q psy14493 200 GGSGGALAIAVSD--ITLMLQYAIYSVISPEGCASILWKTSKR----ASD----------------------AAEAL--- 248 (318)
Q Consensus 200 ~~ggga~~~~~~D--~via~~~A~i~v~gP~~~a~il~~~~~~----~~~----------------------a~e~~--- 248 (318)
|++.|++.+..+| .++|.|+|++.+=-|.+.+ ....... +++ ..+.+
T Consensus 107 AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~--~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~m~rd 184 (205)
T 4gm2_A 107 AYGIACILASSGKKGYRFSLKNSSFCLNQSYSII--PFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERD 184 (205)
T ss_dssp EETHHHHHHTTSCTTCEEECTTCEEEECCCCCCC--CSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTTSC
T ss_pred ehhHHHHHHhcCCCCCEEecCCCEEEEecCcccc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Confidence 9999999887777 5999999999886665322 0111000 000 11111
Q ss_pred -cccHHHHHHcCCcceeec
Q psy14493 249 -GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 -~~~a~~a~~~G~vD~ii~ 266 (318)
.++|.+|.+.|+||+|+.
T Consensus 185 ~~msa~EA~eyGlID~V~~ 203 (205)
T 4gm2_A 185 KYFNADEAVDFKLIDHILE 203 (205)
T ss_dssp EEEEHHHHHHTTSCSEECC
T ss_pred cccCHHHHHHcCCccEeec
Confidence 269999999999999986
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-06 Score=89.23 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=94.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCC-CCC-chhHHhhc------------hHHHHHHHHHHHhcCCCCEEE
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPG-AFP-GIDAEERG------------QSEAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~G-a~~-~~~~e~~g------------~~~~~~~~~~~~s~~~vP~Ia 194 (318)
.+++......+..+++.+... .+-.|.|.- ++ ++. |-....+. ........+..+..+++|+|+
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 107 (725)
T 2wtb_A 29 NSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVA 107 (725)
T ss_dssp TCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------CCSSSHHHHHCCCCCCCTSSSCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhhhhHHHHHHHHHHHHHHHHhCcCcEEE
Confidence 578999999999999887654 567777765 33 222 21111110 011122223345567899999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
+|.|.|.|||...+..||++|+.++++|++ +-|..+.+...++..+...+.+.+ .+++.++++.|+||++
T Consensus 108 av~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~~A~~l~ltG~~~~a~eA~~~GLv~~v 187 (725)
T 2wtb_A 108 AIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAV 187 (725)
T ss_dssp EECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred EECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHCCccceE
Confidence 999999999999888899999999999877 345555555555555555555554 4899999999999999
Q ss_pred ec
Q psy14493 265 IK 266 (318)
Q Consensus 265 i~ 266 (318)
++
T Consensus 188 v~ 189 (725)
T 2wtb_A 188 VP 189 (725)
T ss_dssp CC
T ss_pred cC
Confidence 96
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-06 Score=87.47 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHHHhC-C-CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhc
Q psy14493 132 AKPEGYRKAVRLMHIAEKF-N-LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIA 209 (318)
Q Consensus 132 ~~~~~~~K~~r~~~~A~~~-~-lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~ 209 (318)
++......+.+.++.|.+. + .-||.-+||||..+... ..+...+..+...++|+|+.|.|.|+|||++.+.
T Consensus 319 ~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~spGG~~~~~-------~~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~ 391 (593)
T 3bf0_A 319 QGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS-------EVIRAELAAARAAGKPVVVSMGGMAASGGYWIST 391 (593)
T ss_dssp TTSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEECHHHH-------HHHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTT
T ss_pred cchhHHHHHHHHHHHHHhCCCCCEEEEEecCCCCCHHHH-------HHHHHHHHHHHhCCCCEEEEECCChHHHHHHHHH
Confidence 4566778888888888765 3 35677788988654321 2345556667777899999999999999999999
Q ss_pred cccEEEEEcccEEEEeC
Q psy14493 210 VSDITLMLQYAIYSVIS 226 (318)
Q Consensus 210 ~~D~via~~~A~i~v~g 226 (318)
.||+++|.|++.++..|
T Consensus 392 aaD~iva~p~a~~Gsig 408 (593)
T 3bf0_A 392 PANYIVANPSTLTGSIG 408 (593)
T ss_dssp TCSEEEECTTCEEECCC
T ss_pred hCCEEEECCCCEeecce
Confidence 99999999999888765
|
| >3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.5e-06 Score=74.38 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhC-CCc-EEEEecCCCCCCchhHHhhchHHHHHHHHHHHhc-CCCCEEEEEcCCCchhhhhhhcccc
Q psy14493 136 GYRKAVRLMHIAEKF-NLP-IFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSK-LKVPLISTIIGEGGSGGALAIAVSD 212 (318)
Q Consensus 136 ~~~K~~r~~~~A~~~-~lP-iV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~-~~vP~IavV~G~~~ggga~~~~~~D 212 (318)
+.+.+.+.++.|.+. ++- ||.-.|++|..+... ..+.+.+..+.. .++|+|+.|.|.|.|||.+.+..||
T Consensus 30 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~-------~~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D 102 (240)
T 3rst_A 30 NHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYES-------AEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAAD 102 (240)
T ss_dssp CHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHH-------HHHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHH-------HHHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCC
Confidence 456777777777654 444 555578888765432 344555666665 6799999999999999999998999
Q ss_pred EEEEEcccEEEEeCh
Q psy14493 213 ITLMLQYAIYSVISP 227 (318)
Q Consensus 213 ~via~~~A~i~v~gP 227 (318)
+++|.|++.++..|.
T Consensus 103 ~i~a~~~a~~g~~Gv 117 (240)
T 3rst_A 103 KIFATPETLTGSLGV 117 (240)
T ss_dssp EEEECTTCEEECCCC
T ss_pred eeEECCCCeEeccce
Confidence 999999998887654
|
| >1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-06 Score=85.25 Aligned_cols=58 Identities=34% Similarity=0.677 Sum_probs=48.6
Q ss_pred HHHcCCcceeecCccccCCCCchHHHHHHHHHHhhc-cCccccccCCCCCCCCCChHHhhhhhc
Q psy14493 255 LKSIGLINKIIKEPIAYSGGIDSSVLLDISFTLFCN-YKIQFYVFHINHGLSPSSDKWLIHCKN 317 (318)
Q Consensus 255 a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~-~~~~~~~~~~~h~~~~~~~~w~~~~~~ 317 (318)
+.+.| +.|+ +|+|||.||++|++.+.++... .+.++.++|+|||++++|+.|+++|++
T Consensus 9 ~l~~~--~~vl---Va~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~ 67 (433)
T 1ni5_A 9 QLLTS--RQIL---VAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCEN 67 (433)
T ss_dssp HHTTC--SEEE---EECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHH
T ss_pred hcCCC--CEEE---EEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHH
Confidence 34445 6666 7999999999999999887765 567889999999999999999998864
|
| >3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.8e-06 Score=84.80 Aligned_cols=49 Identities=29% Similarity=0.417 Sum_probs=44.4
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC-CCChHHhhhhhc
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS-PSSDKWLIHCKN 317 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~-~~~~~w~~~~~~ 317 (318)
+|+|||.||++||+.+.++....+.++.++|+|||++ ++|+.|+++|++
T Consensus 23 Va~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~ 72 (464)
T 3a2k_A 23 VGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKR 72 (464)
T ss_dssp EECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHH
T ss_pred EEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHH
Confidence 7999999999999999888776778899999999999 889999999874
|
| >1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=4.1e-06 Score=78.12 Aligned_cols=53 Identities=34% Similarity=0.587 Sum_probs=44.9
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCcc-ccccCCCCCCCCCChHHhhhhhc
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQ-FYVFHINHGLSPSSDKWLIHCKN 317 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~-~~~~~~~h~~~~~~~~w~~~~~~ 317 (318)
+.++ +|+|||.||++|++.+.++...++.+ +.++|+|||+++.++.|.++|++
T Consensus 25 ~~vl---va~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~ 78 (317)
T 1wy5_A 25 RRVL---IAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKE 78 (317)
T ss_dssp CEEE---EECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHH
T ss_pred CEEE---EEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHH
Confidence 4555 79999999999999988876656677 88999999999888999988864
|
| >1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00038 Score=60.78 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=37.6
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCCChHHhhhhhc
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCKN 317 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~~~~w~~~~~~ 317 (318)
|.|+ +++|||.||.+||+.+.++. .++.++|+|||++. ++|.+||++
T Consensus 45 ~~v~---Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~~~--~e~~~~v~~ 91 (215)
T 1sur_A 45 GEYV---LSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYLF--PETYRFIDE 91 (215)
T ss_dssp SEEE---EECCCCTTHHHHHHHHHHHS----TTCEEEEEECSCBC--HHHHHHHHH
T ss_pred CCEE---EEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCCCC--HHHHHHHHH
Confidence 5666 79999999999999887763 45789999999974 567777753
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0069 Score=61.05 Aligned_cols=87 Identities=9% Similarity=0.003 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHhC-C-CcEEEEecCCC-CCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc
Q psy14493 134 PEGYRKAVRLMHIAEKF-N-LPIFTFIDTPG-AFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV 210 (318)
Q Consensus 134 ~~~~~K~~r~~~~A~~~-~-lPiV~lvDs~G-a~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~ 210 (318)
...+..+.+.++.|.+. + -.|+.-+|||| ..+.. ...+...+..+...++|+++.+- .+..++.|.+..
T Consensus 69 ~~~~~~i~~~L~~a~~d~~ik~I~L~inspGgG~v~~-------~~~I~~~i~~~k~~gkpvva~~~-~aas~~y~lAsa 140 (593)
T 3bf0_A 69 ENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPS-------MQYIGKALKEFRDSGKPVYAVGE-NYSQGQYYLASF 140 (593)
T ss_dssp EEEHHHHHHHHHHHHHCTTCCCEEEECTEEEECCHHH-------HHHHHHHHHHHHHTTCCEEEEES-CEEHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHhCCCceEEEEEeCCCCCCcHHH-------HHHHHHHHHHHHhcCCeEEEEEc-cchhHHHHHHHh
Confidence 45678888888887654 3 46889999998 55432 24566777777776799999754 456677777778
Q ss_pred ccEEEEEcccEEEEeChh
Q psy14493 211 SDITLMLQYAIYSVISPE 228 (318)
Q Consensus 211 ~D~via~~~A~i~v~gP~ 228 (318)
||.++|.|++.++..||.
T Consensus 141 ad~i~~~P~~~vg~~g~~ 158 (593)
T 3bf0_A 141 ANKIWLSPQGVVDLHGFA 158 (593)
T ss_dssp SSEEEECTTCCEECCCCB
T ss_pred CCEEEECCCceEEEeccc
Confidence 999999999999998884
|
| >1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0023 Score=59.73 Aligned_cols=50 Identities=24% Similarity=0.345 Sum_probs=40.1
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCCChHHhhhhh
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCK 316 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~~~~w~~~~~ 316 (318)
+.++ +++|||.||.+||+.+.+++...+.++.++|++||+.. ++|.+|++
T Consensus 47 ~~iv---Va~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~--~et~~~v~ 96 (325)
T 1zun_A 47 DNPV---MLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKF--QEMYRFRD 96 (325)
T ss_dssp SSEE---EECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCC--HHHHHHHH
T ss_pred CCEE---EEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCC--HHHHHHHH
Confidence 4555 69999999999999999887655567889999999974 45666665
|
| >2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0096 Score=53.31 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=35.6
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCCChHHhhhhh
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCK 316 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~~~~w~~~~~ 316 (318)
|.++ +++|||.||.+||+.+.++. .++.++|++||.+. +++.+|++
T Consensus 46 ~~v~---va~SGG~DS~vLL~ll~~~~----~~v~vv~idtg~~~--~et~~~~~ 91 (252)
T 2o8v_A 46 GEYV---LSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYLF--PETYRFID 91 (252)
T ss_dssp SCEE---EECCCSTTHHHHHHHHHHHS----TTCEEEECCCSCBC--HHHHHHHH
T ss_pred CCEE---EEeCCCHHHHHHHHHHHHhC----CCCeEEEecCCCCC--HHHHHHHH
Confidence 4555 69999999999999887764 35779999999973 45566654
|
| >3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.015 Score=57.79 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=35.0
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCCChHHhhh
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIH 314 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~~~~w~~~ 314 (318)
+.++ +|+|||.||.++++.+.+.+ +.++.++|++||+++. ++++.+
T Consensus 231 ~kvl---valSGGvDSsvla~ll~~~~---G~~v~av~vd~g~~~~-~e~~~~ 276 (527)
T 3tqi_A 231 EQVI---VGLSGGVDSAVTATLVHKAI---GDQLVCVLVDTGLLRL-NEVDEV 276 (527)
T ss_dssp SCEE---EECTTTHHHHHHHHHHHHHH---GGGEEEEEECCSCSCT-THHHHH
T ss_pred CeEE---EEEecCcCHHHHHHHHHHHh---CCeEEEEEeccCCCCh-hHHHHH
Confidence 5565 69999999999999887653 3467899999999843 344443
|
| >2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.017 Score=51.90 Aligned_cols=37 Identities=14% Similarity=-0.036 Sum_probs=31.1
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
+++|||.||.+||+.+.++... +.++.++|++||...
T Consensus 46 va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~~~ 82 (261)
T 2oq2_A 46 QTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLHHF 82 (261)
T ss_dssp EECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSCBC
T ss_pred EEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCCCC
Confidence 6999999999999998887654 346779999999973
|
| >2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.033 Score=51.40 Aligned_cols=39 Identities=31% Similarity=0.415 Sum_probs=31.7
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
+.++ +++|||.||.++++.+.+.+ +.++.++|++||+.+
T Consensus 21 ~kvl---valSGGvDSsvla~ll~~~~---g~~v~av~vd~g~~~ 59 (308)
T 2dpl_A 21 SKAI---IALSGGVDSSTAAVLAHKAI---GDRLHAVFVNTGFLR 59 (308)
T ss_dssp SCEE---EECCSSHHHHHHHHHHHHHH---GGGEEEEEEECSCCC
T ss_pred CCEE---EEEeChHHHHHHHHHHHHhh---CCCEEEEEEcCCCCC
Confidence 5565 69999999999999887653 346789999999975
|
| >1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A | Back alignment and structure |
|---|
Probab=90.83 E-value=0.25 Score=44.25 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=29.9
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
+.++ +++|||.||.++++.+.+.. +.++.++|.+|+..
T Consensus 26 ~~vv---v~lSGGiDSsv~~~l~~~~~---~~~v~av~~~~~~~ 63 (268)
T 1xng_A 26 KKVV---YGLSGGLDSAVVGVLCQKVF---KENAHALLMPSSVS 63 (268)
T ss_dssp CCEE---EECCSSHHHHHHHHHHHHHH---GGGEEEEECCCSSS
T ss_pred CCEE---EEccCcHHHHHHHHHHHHhC---CCCEEEEEeCCCCC
Confidence 5555 69999999999999877654 23577889999864
|
| >2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.67 E-value=0.17 Score=45.73 Aligned_cols=45 Identities=22% Similarity=0.424 Sum_probs=34.2
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCCChHHhhhhh
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCK 316 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~~~~w~~~~~ 316 (318)
|.|+ +++| |.||.+||+.+.++ +.++.++|++||+.. +++.+|++
T Consensus 55 ~~i~---Va~S-GkDS~vLL~Ll~~~----~~~i~vv~iDtg~~~--~et~~~v~ 99 (275)
T 2goy_A 55 DELW---ISFS-GAEDVVLVDMAWKL----NRNVKVFSLDTGRLH--PETYRFID 99 (275)
T ss_dssp TTEE---EECC-SSTTHHHHHHHHHH----CTTCCEEEECCSCCC--HHHHHHHH
T ss_pred CCEE---EEee-cHHHHHHHHHHHHh----CCCceEEEEeCCCCC--HHHHHHHH
Confidence 5666 6999 99999999988765 346779999999973 34455543
|
| >1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* | Back alignment and structure |
|---|
Probab=90.54 E-value=0.12 Score=50.19 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=30.4
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
+.|+ +++|||+||.++++.+.+. +.++.++|.|||.+
T Consensus 11 ~KVv---VA~SGGlDSSvll~~L~e~----G~eViavtvd~Gq~ 47 (455)
T 1k92_A 11 QRIG---IAFSGGLDTSAALLWMRQK----GAVPYAYTANLGQP 47 (455)
T ss_dssp SEEE---EECCSSHHHHHHHHHHHHT----TCEEEEEEEECCCT
T ss_pred CeEE---EEEcChHHHHHHHHHHHHc----CCEEEEEEEEcCCC
Confidence 4555 6999999999999987542 66788999999975
|
| >3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0 | Back alignment and structure |
|---|
Probab=90.53 E-value=0.31 Score=43.38 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=33.8
Q ss_pred HHHcCCcceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 255 LKSIGLINKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 255 a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
..+.| .+.++ +|+|||.||.++++.+.+.+ +.++.++|.+|+..+
T Consensus 21 v~~~g-~~~vv---v~lSGGiDSsv~a~l~~~~~---g~~v~av~~~~~~~~ 65 (249)
T 3p52_A 21 VKNSQ-SQGVV---LGLSGGIDSALVATLCKRAL---KENVFALLMPTQISN 65 (249)
T ss_dssp HHTSS-CSEEE---EECCSSHHHHHHHHHHHHHH---TTSEEEEECCSCCSS
T ss_pred HHHhC-CCCEE---EEcCCCHHHHHHHHHHHHHc---CCcEEEEEecCCCCC
Confidence 33445 56666 69999999999998876643 356789999998763
|
| >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* | Back alignment and structure |
|---|
Probab=90.18 E-value=0.088 Score=51.82 Aligned_cols=38 Identities=29% Similarity=0.531 Sum_probs=31.4
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
+.++ +++|||.||.++++.+.+. +.++.++|++||+.+
T Consensus 210 ~kvv---valSGGvDSsvla~ll~~~----g~~v~av~vd~g~~~ 247 (503)
T 2ywb_A 210 DRVL---LAVSGGVDSSTLALLLAKA----GVDHLAVFVDHGLLR 247 (503)
T ss_dssp SEEE---EEECSSHHHHHHHHHHHHH----TCEEEEEEEECSCSC
T ss_pred ccEE---EEecCCcchHHHHHHHHHc----CCeEEEEEEeCCCCC
Confidence 5555 6999999999999988765 467889999999863
|
| >2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* | Back alignment and structure |
|---|
Probab=88.92 E-value=0.15 Score=48.40 Aligned_cols=34 Identities=24% Similarity=0.163 Sum_probs=28.1
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
+++|||.||.++++.+.+ .+.++.++|.+|+.+.
T Consensus 22 Va~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~ 55 (380)
T 2der_A 22 VGMSGGVDSSVSAWLLQQ----QGYQVEGLFMKNWEED 55 (380)
T ss_dssp EECCSCSTTHHHHHHHHT----TCCEEEEEEEECCCCC
T ss_pred EEEEChHHHHHHHHHHHH----cCCeEEEEEEEcCccc
Confidence 699999999999987654 3667889999998764
|
| >2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.85 E-value=0.24 Score=45.50 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=32.3
Q ss_pred cccCCCCchHHHHHHHHHHhhcc------------------CccccccCCCCCCCCCChHHhhhh
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNY------------------KIQFYVFHINHGLSPSSDKWLIHC 315 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~------------------~~~~~~~~~~h~~~~~~~~w~~~~ 315 (318)
+++|||.||.+|||.+.+.+... ..++.++|++.|.- .++..+|+
T Consensus 58 vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~--fpet~~fv 120 (306)
T 2wsi_A 58 FSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEET--FPTLENFV 120 (306)
T ss_dssp EECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTC--CHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCC--CHHHHHHH
Confidence 69999999999999988764321 34577889988864 24444444
|
| >1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 | Back alignment and structure |
|---|
Probab=88.02 E-value=0.27 Score=48.58 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=31.6
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPS 307 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~ 307 (318)
+.++ +++|||.||.++++.+.+.+ +.++.++|++||+++.
T Consensus 228 ~~vv---valSGGvDSsv~a~ll~~a~---G~~v~av~v~~g~~~~ 267 (525)
T 1gpm_A 228 DKVI---LGLSGGVDSSVTAMLLHRAI---GKNLTCVFVDNGLLRL 267 (525)
T ss_dssp CEEE---EECCSSHHHHHHHHHHHHHH---GGGEEEEEEECSCSCT
T ss_pred cceE---EEecCCCCHHHHHHHHHHHh---CCCEEEEEEeCCCCCc
Confidence 4555 69999999999998876643 3467899999999754
|
| >2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=86.81 E-value=0.26 Score=43.79 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=30.0
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
+.++ +++|||.||.++++.+.+.... .++.++|.+|+.+
T Consensus 23 ~~vv---v~lSGGiDSs~~~~l~~~~~g~--~~v~av~~~~~~~ 61 (257)
T 2e18_A 23 NGVV---IGISGGVDSATVAYLATKALGK--EKVLGLIMPYFEN 61 (257)
T ss_dssp TCEE---EECCSSHHHHHHHHHHHHHHCG--GGEEEEECCSSCS
T ss_pred CcEE---EEecCCHHHHHHHHHHHHhcCC--CcEEEEEeCCCCc
Confidence 4555 6999999999999887765421 3577899999864
|
| >3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=86.03 E-value=0.42 Score=47.64 Aligned_cols=41 Identities=37% Similarity=0.567 Sum_probs=32.1
Q ss_pred cceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCC
Q psy14493 261 INKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPS 307 (318)
Q Consensus 261 vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~ 307 (318)
-+.++ +|+|||.||.+++..+.+.+ +.++.++|++||+++.
T Consensus 255 ~~~vv---valSGGvDSsv~a~ll~~~~---G~~v~~v~vd~g~~~~ 295 (556)
T 3uow_A 255 DHYVI---AAMSGGIDSTVAAAYTHKIF---KERFFGIFIDNGLLRK 295 (556)
T ss_dssp TCEEE---EECCSSHHHHHHHHHHHHHH---GGGEEEEEEECSCSCT
T ss_pred CceEE---EEcccCCCHHHHHHHHHHHh---CCeEEEEEEecCCCCh
Confidence 46666 69999999999988776543 3467899999999743
|
| >2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1 | Back alignment and structure |
|---|
Probab=83.71 E-value=0.51 Score=45.11 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=28.1
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHG 303 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~ 303 (318)
+.++ +++|||.||.++++.+.+ .+.++.++|++|+
T Consensus 188 ~kvl---valSGGvDS~vll~ll~~----~G~~v~av~v~~~ 222 (413)
T 2c5s_A 188 GKVM---VLLSGGIDSPVAAYLTMK----RGVSVEAVHFHSP 222 (413)
T ss_dssp EEEE---EECCSSSHHHHHHHHHHH----BTEEEEEEEEECT
T ss_pred CeEE---EEeCCCChHHHHHHHHHH----cCCcEEEEEEeCC
Confidence 4555 699999999999998765 2567889999885
|
| >3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=83.51 E-value=1.4 Score=38.99 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=27.9
Q ss_pred cceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 261 INKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 261 vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
.+.++ +|+|||.||.++++.+.+.. ...+ ++|.+|+..
T Consensus 29 ~~~vv---v~lSGGiDSsv~a~l~~~~~---~~~~-av~~~~~~~ 66 (249)
T 3fiu_A 29 AEGFV---IGLSGGIDSAVAASLAVKTG---LPTT-ALILPSDNN 66 (249)
T ss_dssp CSEEE---EECCSSHHHHHHHHHHHHTT---SCEE-EEECCCTTS
T ss_pred CCCEE---EEecCcHHHHHHHHHHHHhC---CCCE-EEEecCCCC
Confidence 56666 69999999999998876543 2233 888888753
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.43 E-value=0.91 Score=46.46 Aligned_cols=39 Identities=28% Similarity=0.491 Sum_probs=31.1
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccC-ccccccCCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYK-IQFYVFHINHGLSP 306 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~-~~~~~~~~~h~~~~ 306 (318)
+.++ +|+|||.||.+++..+.+.+ + .++.++|++||+++
T Consensus 241 ~~vv---v~lSGGvDSsVla~Ll~~al---G~~~V~aV~vd~g~~~ 280 (697)
T 2vxo_A 241 SKVL---VLLSGGVDSTVCTALLNRAL---NQEQVIAVHIDNGFMR 280 (697)
T ss_dssp CEEE---EECCSSHHHHHHHHHHHHHS---CGGGEEEEEEECSCCC
T ss_pred cceE---EEccCchHHHHHHHHHHHhc---CCceEEEEEeccccCC
Confidence 4555 69999999999998876542 3 46889999999974
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 318 | ||||
| d2f9ya1 | 316 | c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase c | 1e-82 | |
| d2a7sa2 | 271 | c.14.1.4 (A:278-548) Propionyl-CoA carboxylase com | 2e-30 | |
| d1uyra2 | 404 | c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxyla | 5e-30 | |
| d1vrga2 | 264 | c.14.1.4 (A:252-515) Propionyl-CoA carboxylase com | 4e-27 | |
| d1xnya2 | 263 | c.14.1.4 (A:268-530) Propionyl-CoA carboxylase com | 5e-26 | |
| d1on3a2 | 264 | c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltra | 8e-25 | |
| d1pixa3 | 299 | c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase | 1e-24 | |
| d1pixa2 | 287 | c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A | 5e-11 | |
| d1xnya1 | 258 | c.14.1.4 (A:10-267) Propionyl-CoA carboxylase comp | 2e-07 | |
| d1uyra1 | 333 | c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxyla | 1e-06 | |
| d1ni5a1 | 227 | c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, T | 5e-06 | |
| d2a7sa1 | 258 | c.14.1.4 (A:20-277) Propionyl-CoA carboxylase comp | 1e-05 | |
| d1vl2a1 | 168 | c.26.2.1 (A:2-169) Argininosuccinate synthetase, N | 8e-04 | |
| d1j20a1 | 165 | c.26.2.1 (A:1-165) Argininosuccinate synthetase, N | 0.001 | |
| d1wy5a1 | 216 | c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aqui | 0.003 |
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Score = 250 bits (639), Expect = 1e-82
Identities = 152/268 (56%), Positives = 201/268 (75%), Gaps = 3/268 (1%)
Query: 5 FLNFEEPIIKLEKKIEKLRSLQ---FSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQIS 61
FL+FE+PI +LE KI+ L + +I+ +E++ L +K +LT +I++ L WQI+
Sbjct: 2 FLDFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIA 61
Query: 62 QIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV 121
Q+ARHP+RPYTLDY+R F + EL GDR Y DD +I+G +AR++G M+IGHQKGR
Sbjct: 62 QLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGRET 121
Query: 122 NERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHS 181
E+I RNFGM PEGYRKA+RLM +AE+F +PI TFIDTPGA+PG+ AEERGQSEAI +
Sbjct: 122 KEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPGVGAEERGQSEAIARN 181
Query: 182 IYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241
+ MS+L VP++ T+IGEGGSGGALAI V D MLQY+ YSVISPEGCASILWK++ +A
Sbjct: 182 LREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKA 241
Query: 242 SDAAEALGLTADKLKSIGLINKIIKEPI 269
AAEA+G+ +LK + LI+ II EP+
Sbjct: 242 PLAAEAMGIIRPRLKELKLIDSIIPEPL 269
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 114 bits (285), Expect = 2e-30
Identities = 47/222 (21%), Positives = 79/222 (35%), Gaps = 21/222 (9%)
Query: 63 IARHPKRPYTL-DYIREIFTD-IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
I P +PY + + I + D E+ +I+ RI+G ++ +Q
Sbjct: 27 IPDSPNQPYDMHEVITRLLDDEFLEIQAGY----AQNIVVGFGRIDGRPVGIVANQP--- 79
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
G KA R + + FN+PI +D PG PG D E G
Sbjct: 80 -----THFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAK 134
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIA----VSDITLMLQYAIYSVISPEGCASILWK 236
+Y + VP I+ I + G + D+ L A +V+ G +++
Sbjct: 135 LLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYR 194
Query: 237 TSKRASDAAEALGLTADKLKSIGLINKIIKEPI--AYSGGID 276
+ A AA + +L+ + P A G +D
Sbjct: 195 Q-QLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVD 235
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 115 bits (289), Expect = 5e-30
Identities = 32/208 (15%), Positives = 57/208 (27%), Gaps = 27/208 (12%)
Query: 69 RPYTLDYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQK--------- 117
R + +F E + ++ AR+ G VIG +
Sbjct: 36 RETESGFEYGLFDKGSFFETLSG--WAK--GVVVGRARLGGIPLGVIGVETRTVENLIPA 91
Query: 118 ---GRNVNERIIRNFGMA--KPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEER 172
N E +I+ G ++ A + LP+ + G G
Sbjct: 92 DPANPNSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFN 151
Query: 173 GQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIY-------SVI 225
+ + + K P+I I G G + V Q +Y V+
Sbjct: 152 EVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVL 211
Query: 226 SPEGCASILWKTSKRASDAAEALGLTAD 253
P+G I ++ K +
Sbjct: 212 EPQGMVGIKFRREKLLDTMNRLDDKYRE 239
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Score = 104 bits (261), Expect = 4e-27
Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 19/190 (10%)
Query: 63 IARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGR 119
+ +P + Y + D I+ + E+ +I+ ARI G++ ++ +Q
Sbjct: 23 LPDNPNKGYDVRDVIKRVVDHGEFFEVQPYFA----KNIVIGFARIQGKTVGIVANQ--- 75
Query: 120 NVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIG 179
G+ + KA R + + FN+PI TF+DTPG PG+ E G
Sbjct: 76 -----PSVLAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGA 130
Query: 180 HSIYVMSKLKVPLISTIIGEGGSGGALAIA----VSDITLMLQYAIYSVISPEGCASILW 235
+Y S+ VP I+ I+ + G +A+ +D+ L A +V+ PEG A+I++
Sbjct: 131 KLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGPEGAANIIF 190
Query: 236 KTSKRASDAA 245
K AS
Sbjct: 191 KREIEASSNP 200
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Score = 102 bits (254), Expect = 5e-26
Identities = 46/221 (20%), Positives = 83/221 (37%), Gaps = 21/221 (9%)
Query: 63 IARHPKRPYTL-DYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV 121
+ +PY + I + D + + I+ R+ G ++ +Q
Sbjct: 21 VPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPN--ILTGFGRVEGRPVGIVANQP---- 74
Query: 122 NERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHS 181
++ G KA R + + FN+P+ TF+D PG PG+D E G
Sbjct: 75 ----MQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKL 130
Query: 182 IYVMSKLKVPLISTIIGEGGSGGALAIA----VSDITLMLQYAIYSVISPEGCASILWKT 237
I+ ++ VPLI+ I + G + +D+ L A +V+ +G +IL +
Sbjct: 131 IFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRR 190
Query: 238 SKRASDAAEALGLTADKLKSIGLINKIIKEPI--AYSGGID 276
+ A A + + I + P A G +D
Sbjct: 191 TI----ADAGDDAEATRARLIQEYEDALLNPYTAAERGYVD 227
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Score = 98.7 bits (245), Expect = 8e-25
Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 19/189 (10%)
Query: 63 IARHPKRPY-TLDYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGR 119
+ K+ Y D I +I D E+ +++ AR+NG S ++ +Q
Sbjct: 23 VPIDGKKGYDVRDVIAKIVDWGDYLEVKAGY----ATNLVTAFARVNGRSVGIVANQ--- 75
Query: 120 NVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIG 179
G KA ++ + FN+P+ +D PG PG+ E G
Sbjct: 76 -----PSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGA 130
Query: 180 HSIYVMSKLKVPLISTIIGEGGSGGALAIA----VSDITLMLQYAIYSVISPEGCASILW 235
+Y S+ VP I+ ++ + G LA+ +D A +V+ EG A++++
Sbjct: 131 KMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIF 190
Query: 236 KTSKRASDA 244
+ +A+D
Sbjct: 191 RKEIKAADD 199
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Score = 98.7 bits (245), Expect = 1e-24
Identities = 37/200 (18%), Positives = 71/200 (35%), Gaps = 19/200 (9%)
Query: 63 IARHPKRPY-TLDYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGR 119
+ + KR Y + I +F +++HE YG ++ LA++NG V+ + +G
Sbjct: 25 VPLNDKRAYDIYNVIARLFDNSELHEYKKG--YGP--EMVTGLAKVNGLLVGVVANVQGL 80
Query: 120 NVNERIIRNF------GMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERG 173
+N + G +G K + + + LPI DT G G DAE+
Sbjct: 81 LMNYPEYKAAGSVGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAE 140
Query: 174 QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY------AIYSVISP 227
IY + +P + +G + + + +V++
Sbjct: 141 LLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQGNDTNAFSIGTAATEIAVMNG 200
Query: 228 EGCASILWKTSKRASDAAEA 247
E A+ ++ A
Sbjct: 201 ETAATAMYSRRLAKDRKAGK 220
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Score = 60.0 bits (144), Expect = 5e-11
Identities = 36/267 (13%), Positives = 87/267 (32%), Gaps = 37/267 (13%)
Query: 5 FLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIA 64
+ + + ++ K ++K + +++ + ++ ++L +E A
Sbjct: 5 MPRYFQNMPQVGKPLKKA-------DAANEEQLKKIEEEIHQLIKEAQEAGKAD-----A 52
Query: 65 RHPKR---------PYTLDYI--REIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVI 113
KR ++ R + T + G++N +I+ L R+NG+ C+V+
Sbjct: 53 DVNKRGELTALQRIEKLVEPGSWRPLNTLFNP-QGNKNGSV--AIVKGLGRVNGKWCVVV 109
Query: 114 GHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERG 173
+ P +R A+ ++P+ ++ G +
Sbjct: 110 ASDNKKLAG--------AWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVYP 161
Query: 174 QSE---AIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGC 230
+++L +P+I I G +GG + + + A +V
Sbjct: 162 NRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIM 221
Query: 231 ASILWKTSKRASDAAEALGLTADKLKS 257
+ K A E + K+
Sbjct: 222 GGMNPKGHVDLEYANEIADMVDRTGKT 248
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Score = 49.4 bits (117), Expect = 2e-07
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 8/158 (5%)
Query: 78 EIFTD---IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV---NERIIRNFGM 131
++ D EL + + G GR V ++ G
Sbjct: 44 DLLLDEGSFVELDEFARHRSTNFGLDANRPYGDGVVTGYGTVDGRPVAVFSQDFTVFGGA 103
Query: 132 AKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVP 191
+K V++M A K P+ D+ GA G I S +P
Sbjct: 104 LGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVASLGAYGEIFRRNTHASG-VIP 162
Query: 192 LISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPE 228
IS ++G G + A++D T+M+ + + P+
Sbjct: 163 QISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPD 200
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.9 bits (111), Expect = 1e-06
Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 17/121 (14%)
Query: 58 WQISQIARHPKRPYTLDYIREIFTDIHEL-HGDRNYGD-DLSIIGVLARI------NGES 109
W+ + A I + EL +R G + ++ + G
Sbjct: 42 WK-NFSADVKLTDDFFISNELIEDENGELTEVEREPGANAIGMVAFKITVKTPEYPRGRQ 100
Query: 110 CMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDA 169
+V+ + I G P+ ++ A K +P GA G+
Sbjct: 101 FVVVAN--------DITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAE 152
Query: 170 E 170
E
Sbjct: 153 E 153
|
| >d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: PP-loop ATPase domain: tRNA-Ile-lysidine synthetase, TilS, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 44.3 bits (103), Expect = 5e-06
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 269 IAYSGGIDSSVLLDISFTLFC-NYKIQFYVFHINHGLSPSSDKWLIHCKN 317
+A+SGG+DS+VLL N + H++HGLS ++D W+ HC+N
Sbjct: 18 VAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCEN 67
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 44.0 bits (103), Expect = 1e-05
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 12/126 (9%)
Query: 130 GMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLK 189
G K V++ +A K P+ D GA G I + + S
Sbjct: 103 GSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQEGVVSLGLYSRIFRNNILASG-V 161
Query: 190 VPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALG 249
+P IS I+G G + A++D +M+ S ++ T
Sbjct: 162 IPQISLIMGAAAGGHVYSPALTDFVIMVD-----------QTSQMFITGPDVIKTVTGEE 210
Query: 250 LTADKL 255
+T ++L
Sbjct: 211 VTMEEL 216
|
| >d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Argininosuccinate synthetase, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 37.4 bits (85), Expect = 8e-04
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCKN 317
+AYSGG+D+SV+L C + N G
Sbjct: 6 LAYSGGLDTSVILK----WLCEKGFDVIAYVANVGQKDDFVAIKEKALK 50
|
| >d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Argininosuccinate synthetase, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 37.0 bits (84), Expect = 0.001
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCKN 317
+AYSGG+D+S++L L Y+ + F + G ++
Sbjct: 5 LAYSGGLDTSIILKW---LKETYRAEVIAFTADIGQGEEVEEAREKALR 50
|
| >d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: PP-loop ATPase domain: TilS-like protein Aq 1887 species: Aquifex aeolicus [TaxId: 63363]
Score = 36.1 bits (82), Expect = 0.003
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQF-YVFHINHGLSPSSDKWLIHC 315
IA+SGG+DS VL D+ L + ++ + H NH L S+++ C
Sbjct: 29 IAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFC 76
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 318 | |||
| d2f9ya1 | 316 | Acetyl-coenzyme A carboxylase carboxyl transferase | 100.0 | |
| d1on3a2 | 264 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 100.0 | |
| d1xnya2 | 263 | Propionyl-CoA carboxylase complex B subunit, PccB | 100.0 | |
| d2a7sa2 | 271 | Propionyl-CoA carboxylase complex B subunit, PccB | 100.0 | |
| d1vrga2 | 264 | Propionyl-CoA carboxylase complex B subunit, PccB | 100.0 | |
| d1pixa3 | 299 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 100.0 | |
| d1on3a1 | 253 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 100.0 | |
| d1vrga1 | 251 | Propionyl-CoA carboxylase complex B subunit, PccB | 100.0 | |
| d1xnya1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 100.0 | |
| d2a7sa1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 100.0 | |
| d1pixa2 | 287 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 100.0 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 99.98 | |
| d2f9yb1 | 263 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.98 | |
| d1uyra1 | 333 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 99.92 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 99.16 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 99.14 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 99.05 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 99.04 | |
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 99.03 | |
| d1pjha_ | 266 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 99.03 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 99.0 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 98.97 | |
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 98.95 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 98.95 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 98.94 | |
| d1hzda_ | 266 | AUH protein {Human (Homo sapiens) [TaxId: 9606]} | 98.91 | |
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 98.88 | |
| d1q52a_ | 297 | Naphthoate synthase MenB {Mycobacterium tuberculos | 98.8 | |
| d1szoa_ | 249 | 6-oxo camphor hydrolase {Rhodococcus erythropolis | 98.73 | |
| d1yg6a1 | 183 | Clp protease, ClpP subunit {Escherichia coli [TaxI | 98.28 | |
| d1tg6a1 | 193 | Clp protease, ClpP subunit {Human (Homo sapiens), | 98.28 | |
| d1wy5a1 | 216 | TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId | 98.22 | |
| d1ni5a1 | 227 | tRNA-Ile-lysidine synthetase, TilS, N-terminal dom | 98.21 | |
| d2cbya1 | 179 | Clp protease, ClpP subunit {Mycobacterium tubercul | 98.17 | |
| d1y7oa1 | 192 | Clp protease, ClpP subunit {Streptococcus pneumoni | 98.12 | |
| d2f6ia1 | 190 | Clp protease, ClpP subunit {Plasmodium falciparum | 98.11 | |
| d1k92a1 | 188 | Argininosuccinate synthetase, N-terminal domain {E | 96.68 | |
| d1zuna1 | 211 | Sulfate adenylyltransferase subunit 2, CysD {Pseud | 95.05 | |
| d1gpma1 | 197 | GMP synthetase, central domain {Escherichia coli [ | 90.57 | |
| d1sura_ | 215 | Phosphoadenylyl sulphate (PAPS) reductase {Escheri | 81.36 |
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-63 Score=460.86 Aligned_cols=266 Identities=57% Similarity=0.991 Sum_probs=249.1
Q ss_pred cccchhhhHHHHHHHHHHHHhhhhhc---CCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhc
Q psy14493 4 IFLNFEEPIIKLEKKIEKLRSLQFSS---NIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIF 80 (318)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~ 80 (318)
||||||++|++++++|++|+...... ..+..++|+++++++.+++++||.+||+||++++.+||+||+..+|+..+|
T Consensus 1 nyLdFEkpi~eLe~kI~~L~~~~~~~~~~~~d~~~ei~~Le~k~~~l~k~iy~~Lt~w~~vq~aRhp~Rp~~~d~i~~i~ 80 (316)
T d2f9ya1 1 NFLDFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVRLAF 80 (316)
T ss_dssp CCCSTTHHHHHTTTTTTC---------------CCGGGGTHHHHHTTTTHHHHTCCHHHHHHHHTCTTCCCHHHHHHHHC
T ss_pred CCCchhhHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHhhcCCCCccHHHHHhhcc
Confidence 79999999999999999997654332 233345899999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy14493 81 TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDT 160 (318)
Q Consensus 81 d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs 160 (318)
++|.+|+|++.|+||+++++|+|+++|+||+|++++++.+++++..+++|+++|++++|+.|++++|++|++|||+|+||
T Consensus 81 ~~f~eL~Gdr~~~dD~aii~G~a~~~g~~V~vIg~~kg~~~~~~~~~n~G~~~p~~~rKa~r~~~~a~~~~~Pii~~vDt 160 (316)
T d2f9ya1 81 DEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDT 160 (316)
T ss_dssp EEEEECCCCSSSCCCTTEEEEEEEETTEEEEEEEECCCSSTTHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cchhhcccccccCcCccccceeeeecCCeEEEEEeecCCCcccccccccccccHHHHHHHHHHHHHHHHcCcceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccc
Q psy14493 161 PGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240 (318)
Q Consensus 161 ~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~ 240 (318)
||+++|.++|..|+.+++++++.+++.++||+|+||+|+++||||++++.+|.++|+++|+++|++|++|++|+|++...
T Consensus 161 pG~~~g~~~E~~g~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~d~v~m~~~a~~svispEg~AsILwkd~~~ 240 (316)
T d2f9ya1 161 PGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADK 240 (316)
T ss_dssp SCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSEEEECTTCEEESSCHHHHHHHHSSCSTT
T ss_pred CcccCCcccccccHHHHHHHHHHHHHhCCCceEEEEEhhhhchhhhhhhhhhHHHHHhhhHHhhccchhhhhHhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcccHHHHHHcCCcceeecCcc
Q psy14493 241 ASDAAEALGLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 241 ~~~a~e~~~~~a~~a~~~G~vD~ii~~p~ 269 (318)
++++++.+++++.++.++|+||+||++|.
T Consensus 241 a~eaAealklta~dL~~lgiIDeII~EP~ 269 (316)
T d2f9ya1 241 APLAAEAMGIIRPRLKELKLIDSIIPEPL 269 (316)
T ss_dssp HHHHHHHHTCSHHHHHTTTSCSCCCCCST
T ss_pred hcchHHHHhhhhHHHHHcCchhhcccCCC
Confidence 99999999999999999999999999986
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=100.00 E-value=3.2e-46 Score=340.31 Aligned_cols=225 Identities=23% Similarity=0.381 Sum_probs=201.5
Q ss_pred HhhcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHH
Q psy14493 62 QIARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYR 138 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~ 138 (318)
.+|.|+++|||+ ++|..+||. |.|++++ || +++|||+|||+|+||+||+||+. +++|++++.+++
T Consensus 22 iip~~~~~~yd~r~~i~~~~D~~~f~E~~~~--~g--~~~vtg~ari~G~~vgvian~~~--------~~~G~~~~~~a~ 89 (264)
T d1on3a2 22 IVPIDGKKGYDVRDVIAKIVDWGDYLEVKAG--YA--TNLVTAFARVNGRSVGIVANQPS--------VMSGCLDINASD 89 (264)
T ss_dssp TSCSSTTCCCCTHHHHHHHSGGGCEEEESTT--SS--TTEEEEEEEETTEEEEEEEECTT--------SGGGCBCHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHhccCceeeeecCC--Cc--CCEEEEEEEEecceEEEEeccch--------hcccccChHHHH
Confidence 579999999996 899999994 9999954 99 79999999999999999999998 499999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccEE
Q psy14493 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV----SDIT 214 (318)
Q Consensus 139 K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~----~D~v 214 (318)
|++||+++|+++++|||+|+||+|+.+|.++|..|+++++++++.+++.++||+|+||+|+++|+|+++++. +||+
T Consensus 90 Kaarfi~lc~~~~iPlv~l~D~pGf~~G~~~E~~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~ 169 (264)
T d1on3a2 90 KAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAV 169 (264)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEE
T ss_pred HHHHHHHHHHhcCCceEEEeccccccccHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeccccCccccccccccCChhhe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999863 7999
Q ss_pred EEEcccEEEEeChhHHHHhhhccccchHH---------HHHHh--cccHHHHHHcCCcceeecCccccCCCCchHHHHHH
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKRASD---------AAEAL--GLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLDI 283 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~~~~---------a~e~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~ 283 (318)
+|||+|++++|||++++.++++++....+ ..++. ..+|+.+.++|+||+||+ |. |||..|..
T Consensus 170 ~aWP~A~~~vMg~Egaa~v~~~~el~a~~~~~~~~~~~~~e~~~~~~~p~~aA~~g~iD~VId-P~------eTR~~L~~ 242 (264)
T d1on3a2 170 YAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVID-PA------DTRRKIAS 242 (264)
T ss_dssp EECTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECC-GG------GHHHHHHH
T ss_pred eeHHhhHhhhccHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhcCHHHHHHcCCCCeeEC-HH------HHHHHHHH
Confidence 99999999999999999999987542111 11111 258999999999999998 88 99999999
Q ss_pred HHHHhhccCccccccCCCCCCCCC
Q psy14493 284 SFTLFCNYKIQFYVFHINHGLSPS 307 (318)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~h~~~~~ 307 (318)
.++.+..+.. ..++.+||+.|.
T Consensus 243 aLe~~~~k~~--~~p~kkhGn~P~ 264 (264)
T d1on3a2 243 ALEMYATKRQ--TRPAKKHGNFPC 264 (264)
T ss_dssp HHHHGGGCCC--CCCCCSCCCCCC
T ss_pred HHHHHhcCCC--CCCCCCCCCCCC
Confidence 9998876442 467889999884
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=3.8e-45 Score=333.03 Aligned_cols=225 Identities=22% Similarity=0.368 Sum_probs=200.2
Q ss_pred HhhcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHH
Q psy14493 62 QIARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYR 138 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~ 138 (318)
.+|.|+++|||+ ++|..++|+ |.|++++ || +++|||+|||+|+||+|++||+. +++|++++.+++
T Consensus 20 iip~~~~~~yD~r~~i~~~~D~~~f~E~~~~--~g--~~vitg~ari~G~~vgvia~~~~--------~~~G~~~~~~a~ 87 (263)
T d1xnya2 20 IVPDSANQPYDMHSVIEHVLDDAEFFETQPL--FA--PNILTGFGRVEGRPVGIVANQPM--------QFAGCLDITASE 87 (263)
T ss_dssp TSCSSSSSCCCHHHHHHHHSGGGCCEEESTT--SC--TTEEEEEEEETTEEEEEEEECTT--------TGGGCBCHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHhCCCCEEEeeccc--cC--CcEEeeeeeeccceEEEEecccc--------eecCCcchhhHH
Confidence 368999999995 799999996 9999854 98 69999999999999999999999 599999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccEE
Q psy14493 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV----SDIT 214 (318)
Q Consensus 139 K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~----~D~v 214 (318)
|+.||+++|+++++|||+|+||||+++|.++|..|+.+++++++.+++.++||+|+||+|+++|||.++++. +|++
T Consensus 88 Ka~~fi~lc~~~~iPli~l~d~pGf~~G~~~E~~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~ 167 (263)
T d1xnya2 88 KAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLN 167 (263)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEE
T ss_pred HHHHHHHHHHHhCCceEEeecccccccchhHHHHhHHHHHHHHHHHHHccCCCeEEEEecCccccceeccCCcccCCcEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999888763 7999
Q ss_pred EEEcccEEEEeChhHHHHhhhccccc-h--------HHH-HHHh--cccHHHHHHcCCcceeecCccccCCCCchHHHHH
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKR-A--------SDA-AEAL--GLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLD 282 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~-~--------~~a-~e~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~ 282 (318)
+|||+|++++|||++++.++|++... + .+. .+.. ..+|+.+++.|+||+||+ |. |+|..|.
T Consensus 168 ~awP~a~~gvm~pe~aa~il~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~aA~~g~iD~VId-P~------dTR~~L~ 240 (263)
T d1xnya2 168 LAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIM-PS------DTRRHIV 240 (263)
T ss_dssp EECTTCEEESSCHHHHHHHHTHHHHHSCCTTCSSSHHHHHHHHHHHHSSSHHHHHHTSSSEECC-GG------GHHHHHH
T ss_pred EEcchhhhhccCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcCHHHHHHcccCCcccC-HH------HHHHHHH
Confidence 99999999999999999999876431 1 111 1111 368999999999999999 88 9999999
Q ss_pred HHHHHhhccCccccccCCCCCCCCC
Q psy14493 283 ISFTLFCNYKIQFYVFHINHGLSPS 307 (318)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~h~~~~~ 307 (318)
..++.+..+.. ..++.+||+.|.
T Consensus 241 ~~L~~l~~k~~--~~p~kKhG~iPl 263 (263)
T d1xnya2 241 RGLRQLRTKRE--SLPPKKHGNIPL 263 (263)
T ss_dssp HHHHHHTTCCC--CCCCCSCCCCCC
T ss_pred HHHHHHhccCc--cCCCCCCCCCCC
Confidence 99998876543 367899999874
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=3.2e-45 Score=335.20 Aligned_cols=225 Identities=21% Similarity=0.371 Sum_probs=201.0
Q ss_pred HhhcCCCCCchh-hHHhhhccc-ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHH
Q psy14493 62 QIARHPKRPYTL-DYIREIFTD-IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRK 139 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d~-~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K 139 (318)
.+|.|+.+|||+ ++|.+++|+ |.|++++ |+ +++|||+|||+|+||+|+|||+. ++||++++.+++|
T Consensus 26 ~ip~~~~~~yd~r~~i~~i~D~sf~E~~~~--~g--~~~itg~ari~G~~vgvian~~~--------~~~G~~~~~~~~K 93 (271)
T d2a7sa2 26 LIPDSPNQPYDMHEVITRLLDDEFLEIQAG--YA--QNIVVGFGRIDGRPVGIVANQPT--------HFAGCLDINASEK 93 (271)
T ss_dssp TSCSSSSCCCCTHHHHHHHSSSCCEEESTT--SC--TTEEEEEEESSSCEEEEEEECTT--------TGGGCBCHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHhCCcchhhccc--cc--cceeEEEEEECCeEEEEEecccc--------ccCCCcCHHHHHH
Confidence 468899999995 899999996 9999965 98 69999999999999999999998 5999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccEEE
Q psy14493 140 AVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV----SDITL 215 (318)
Q Consensus 140 ~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~----~D~vi 215 (318)
+.||+++|+++++|||+|+||+||++|.++|..|+++++++++.+++.++||+|+||+|+++|||+++++. +|+++
T Consensus 94 a~rfi~lc~~~~iPlv~l~dtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~ 173 (271)
T d2a7sa2 94 AARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNL 173 (271)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHHCHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEE
T ss_pred HHHHHHHHHHhCCceEEeechhhhhhhccHHHhhHHHHHHHHHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888763 79999
Q ss_pred EEcccEEEEeChhHHHHhhhccccchHH-------------HHHHh--cccHHHHHHcCCcceeecCccccCCCCchHHH
Q psy14493 216 MLQYAIYSVISPEGCASILWKTSKRASD-------------AAEAL--GLTADKLKSIGLINKIIKEPIAYSGGIDSSVL 280 (318)
Q Consensus 216 a~~~A~i~v~gP~~~a~il~~~~~~~~~-------------a~e~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~l 280 (318)
+||+|++++|||++++.+++++.....+ ..++. ..+|+.+.++|+||+||+ |. |||..
T Consensus 174 AwP~A~igvMgpegaa~v~~~~~l~~~~~~~~~~~~~~~~~~~e~~e~~~~p~~aa~~g~iD~VId-P~------dTR~~ 246 (271)
T d2a7sa2 174 AWPTAQIAVMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVIP-PS------HTRGY 246 (271)
T ss_dssp ECTTCEEESSCHHHHHHHHTTTTTTGGGTSSCCTTSSTTHHHHHHHTTTSBSHHHHHHTSSSEECC-GG------GHHHH
T ss_pred EecceeEeecCHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeEC-HH------HHHHH
Confidence 9999999999999999999987542111 11222 258999999999999999 88 99999
Q ss_pred HHHHHHHhhccCccccccCCCCCCCCC
Q psy14493 281 LDISFTLFCNYKIQFYVFHINHGLSPS 307 (318)
Q Consensus 281 l~~~~~l~~~~~~~~~~~~~~h~~~~~ 307 (318)
|..+++++..+.. ..+..+||+.|.
T Consensus 247 L~~~L~~~~~k~~--~~p~kkhGnipl 271 (271)
T d2a7sa2 247 IGTALRLLERKIA--QLPPKKHGNVPL 271 (271)
T ss_dssp HHHHHHHTTTCCC--CCCSCSCCCCCC
T ss_pred HHHHHHHHHcccc--cCCCCCCCCCCC
Confidence 9999998766443 366899999874
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3e-45 Score=333.99 Aligned_cols=225 Identities=25% Similarity=0.416 Sum_probs=200.8
Q ss_pred HhhcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHH
Q psy14493 62 QIARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYR 138 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~ 138 (318)
.+|.|+++|||+ ++|.+++|+ |.|++.+ |+ +++|||++||+|+||+|+|||+. +++|++++.+++
T Consensus 22 ~iP~~~~~~yd~r~~i~~i~D~~~~~E~~~~--~~--~~~v~g~~r~~G~~vgvian~~~--------~~~G~~~~~~a~ 89 (264)
T d1vrga2 22 ILPDNPNKGYDVRDVIKRVVDHGEFFEVQPY--FA--KNIVIGFARIQGKTVGIVANQPS--------VLAGVLDIDSSD 89 (264)
T ss_dssp SSCSSTTSCCCTHHHHHHHSGGGCCEEESTT--SS--TTEEEEEEEETTEEEEEEEECTT--------SGGGCBCHHHHH
T ss_pred cCCCCCCCCCcHHHHHHHhCcCceeeeecCC--CC--CCeEEEEEEecCceEEEEecccc--------ccccchhhhhHH
Confidence 378999999995 899999995 9999854 99 69999999999999999999999 599999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhc----cccEE
Q psy14493 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIA----VSDIT 214 (318)
Q Consensus 139 K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~----~~D~v 214 (318)
|++||+++|+++++|||+|+|||||.+|.++|..|+.+++++++.+++.++||+|++|+|+++|||+++++ .+|++
T Consensus 90 Kaa~fi~lc~~~~iPli~l~DtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~ 169 (264)
T d1vrga2 90 KAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMV 169 (264)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEE
T ss_pred HHHHHHHHHHHhCCceEEEeecccccccHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998886 38999
Q ss_pred EEEcccEEEEeChhHHHHhhhccccch----HHHH-----HH--hcccHHHHHHcCCcceeecCccccCCCCchHHHHHH
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKRA----SDAA-----EA--LGLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLDI 283 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~~----~~a~-----e~--~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~ 283 (318)
+|||+|++++|||++++.+++++.... ++.. ++ ...+|+.+.+.|++|+||+ |. |||..|..
T Consensus 170 ~awP~a~~~vm~pe~aa~v~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~aa~~g~iD~VId-P~------dTR~~L~~ 242 (264)
T d1vrga2 170 LAWPSAEIAVMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVID-PR------ETRKYIMR 242 (264)
T ss_dssp EECTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECC-GG------GHHHHHHH
T ss_pred eeccceeEEecCHHHhhhhhhhhhhhhhhCcHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeEC-HH------HHHHHHHH
Confidence 999999999999999999999875421 1111 11 1258999999999999999 88 99999999
Q ss_pred HHHHhhccCccccccCCCCCCCCC
Q psy14493 284 SFTLFCNYKIQFYVFHINHGLSPS 307 (318)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~h~~~~~ 307 (318)
.++++..+. ...+.++||+.|.
T Consensus 243 ~Le~l~~k~--e~~~~kkHg~~Pl 264 (264)
T d1vrga2 243 ALEVCETKV--EYRPKKKHGNIPL 264 (264)
T ss_dssp HHHHHTTCC--CCCCCCSCCCCCC
T ss_pred HHHHHhccc--cccCCCCCCCCCC
Confidence 999886644 2466789999874
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=100.00 E-value=1.1e-41 Score=315.16 Aligned_cols=232 Identities=17% Similarity=0.236 Sum_probs=197.4
Q ss_pred HhhcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCc------cchhhccCCCC
Q psy14493 62 QIARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV------NERIIRNFGMA 132 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~------~~~~~~~gG~~ 132 (318)
.+|.|++++||+ ++|+.++|+ |.|++ +.|| +++|||+|||||+||+|||||+++.. .....+.||++
T Consensus 24 iiP~~~~~~yd~r~iI~~l~D~~~f~E~~--~~~g--~~~vtg~ari~G~~vgviAn~~~~~~~~~~~~a~~~~~~~G~l 99 (299)
T d1pixa3 24 MVPLNDKRAYDIYNVIARLFDNSELHEYK--KGYG--PEMVTGLAKVNGLLVGVVANVQGLLMNYPEYKAAGSVGIGGKL 99 (299)
T ss_dssp HSCSSTTSCCCHHHHHHTTSGGGBCEESS--TTSS--TTEEEEEEEETTEEEEEEEECCSEETTCCTTSCTTCCEETTEE
T ss_pred hCCCCCCCCCCHHHHHHHhccCCEeEEec--cccC--CceEEEEEEECCeEEEEEeecCccccccccccccCCcCCCCcc
Confidence 578999999996 899999995 99998 4599 79999999999999999999987521 01223459999
Q ss_pred CHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc--
Q psy14493 133 KPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV-- 210 (318)
Q Consensus 133 ~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~-- 210 (318)
++.+++|++||+++|+++++|||+|+||+||.+|.++|..|+.+++++++.+++.++||+|+||+|+|+|||+++++.
T Consensus 100 ~~~~a~K~~rfi~lc~~~~iPlv~l~D~pGf~~g~~~E~~g~~r~ga~~~~a~~~~~VP~isvi~r~~~G~a~~am~g~~ 179 (299)
T d1pixa3 100 YRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQ 179 (299)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEETTHHHHTTCTT
T ss_pred CHHHHHHHHHHHHHHHHcCCeEEEEEeCCCcccchHHHhhhHHHHHHHHHHHHHhhcceeEEEEecccccccccccccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred --ccE--EEEEcccEEEEeChhHHHHhhhccccch--------HHHHHH---------hcccHHHHHHcCCcceeecCcc
Q psy14493 211 --SDI--TLMLQYAIYSVISPEGCASILWKTSKRA--------SDAAEA---------LGLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 211 --~D~--via~~~A~i~v~gP~~~a~il~~~~~~~--------~~a~e~---------~~~~a~~a~~~G~vD~ii~~p~ 269 (318)
+|+ .++||++++++|||++++++++++.... ++..+. ...+|+.+.+.|+||+||+ |.
T Consensus 180 ~~~~~~~~~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~~~~~sp~~aAs~~~iD~IID-P~ 258 (299)
T d1pixa3 180 GNDTNAFSIGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVD-MN 258 (299)
T ss_dssp CTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSSEECC-TT
T ss_pred cCcccceecCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhcCHHHHHHhCCcCeeEC-HH
Confidence 564 4578999999999999999998764321 111111 1368999999999999999 88
Q ss_pred ccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 270 AYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 270 ~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
|||..|..++++..+... ..+..+|++.|
T Consensus 259 ------dTR~~L~~~Le~~~~~~~--~~~p~~~~~~P 287 (299)
T d1pixa3 259 ------KIRGYVEAFTEAAYQNPE--SICPFHQMILP 287 (299)
T ss_dssp ------THHHHHHHHHHHHTTSCS--CCCCGGGCSHH
T ss_pred ------HHHHHHHHHHHHHHhCcc--ccCCCCCCcCh
Confidence 999999999998765442 35668899875
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=100.00 E-value=1.1e-40 Score=302.27 Aligned_cols=228 Identities=17% Similarity=0.135 Sum_probs=187.6
Q ss_pred HHHHHHHHHHhhhhhcCCC-cHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhcccccccccCCcc
Q psy14493 14 KLEKKIEKLRSLQFSSNID-TSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHELHGDRNY 92 (318)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d~~~el~~~~~~ 92 (318)
.|+.++++|+++++.+..+ +.++++|||++ |||||||||+.|+||++|.+++.+....+..........+
T Consensus 5 ~~~~~~~eL~~r~~~~~~~Gg~~~v~k~~~~---------GkltaRERI~~LlD~gSF~E~g~~~~~~~~~~~~~~~~~~ 75 (253)
T d1on3a1 5 TMEGRVEQLAEQRQVIEAGGGERRVEKQHSQ---------GKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVP 75 (253)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHT---------TCCCHHHHHHHHSCTTCCEEECTTCCCCCCTTTTTTCCCG
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHc---------CCCCHHHHHHHHcCCCCccccccccccchhhhhhhccccc
Confidence 4788999999999987554 55599999999 9999999999999999977654221111110000101123
Q ss_pred CCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhh
Q psy14493 93 GDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEER 172 (318)
Q Consensus 93 ~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~ 172 (318)
+ +++|+|+|+|||++|+|+++|++ ++||+++....+|+.|++++|.+.++|+|.|+||+|++++++...+
T Consensus 76 ~--dgvV~G~G~I~gr~v~v~a~Dft--------v~GGS~g~~~~~K~~~a~e~A~~~~lPlV~l~~sgG~r~~eg~~~l 145 (253)
T d1on3a1 76 A--DGVVTGRGTILGRPVHAASQDFT--------VMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSL 145 (253)
T ss_dssp G--GGEEEEEEEETTEEEEEEEECTT--------TGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGGGTHHHH
T ss_pred C--CcEEEEEEEEeceechhhhchhh--------hhcccceecccchhhhhHHHHhhcCCCeEEEEecCCCcccccceec
Confidence 3 69999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccchHHHHHHhcccH
Q psy14493 173 GQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTA 252 (318)
Q Consensus 173 g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a 252 (318)
.+++.++..+..+++. ||+|++++|+|+||+++.++++|+++|.+++++++.||+.....+..+. ..++. .++
T Consensus 146 ~~~~~~~~~~~~ls~~-vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aGP~vVe~~~ge~~-~~eel-----Gga 218 (253)
T d1on3a1 146 SGYGKMFFANVKLSGV-VPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDV-TADEL-----GGA 218 (253)
T ss_dssp HHHHHHHHHHHHHTTT-SCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCHHHHHHHHCCCC-CHHHH-----HSH
T ss_pred cccceehHHHHHHhcc-ceEEEEEecCcccceeeccchhhheeccccceEEecCcchhhhhhCCcC-ChHhc-----cCH
Confidence 8889999999999985 9999999999999999999999999999999999999998766554332 22221 345
Q ss_pred HH-HHHcCCcceeecC
Q psy14493 253 DK-LKSIGLINKIIKE 267 (318)
Q Consensus 253 ~~-a~~~G~vD~ii~~ 267 (318)
.. +...|.||.+++.
T Consensus 219 ~~h~~~sG~iD~v~~~ 234 (253)
T d1on3a1 219 EAHMAISGNIHFVAED 234 (253)
T ss_dssp HHHHHTTCCCSEEESS
T ss_pred HHhhhccccceEEECC
Confidence 43 4568999999984
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.7e-40 Score=297.89 Aligned_cols=240 Identities=19% Similarity=0.181 Sum_probs=191.9
Q ss_pred HHHHHHHHHHhhhhhcCCC-cHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhcc--cccccccCC
Q psy14493 14 KLEKKIEKLRSLQFSSNID-TSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFT--DIHELHGDR 90 (318)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d--~~~el~~~~ 90 (318)
.|++++++|+++++.+..+ +.++++|||++ ||||+||||+.++||++|.+++-....-+ .+.+. ..
T Consensus 2 ~~~~~i~~l~~~~~~~~~~gg~~~~~r~~~~---------GkltaReRi~~L~D~gSF~E~~~~~~~~~~~~~~~~--~~ 70 (251)
T d1vrga1 2 SLRDKIEELKKIEKEIEQGGGPEKVEKQHRA---------GKLTAWERLELLLDPGTFVEIDKFVEHRNTYFGLDK--VK 70 (251)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHT---------TCCCHHHHHHHHSCTTCCEEECTTCCCCCCGGGGGG--CC
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHc---------CCCCHHHHHHHHcCCCCcccccchhccccchhhhcc--cc
Confidence 3778888888888886555 45599999999 99999999999999999887642111111 11111 12
Q ss_pred ccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHH
Q psy14493 91 NYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAE 170 (318)
Q Consensus 91 ~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e 170 (318)
.++ +++|||+|+|||++|+|+++|++ ++||++++.+++|+.|++++|.++++|+|+|+||+|++++++..
T Consensus 71 ~~~--dgvV~G~G~I~G~~v~v~a~D~t--------~~gGs~g~~~~~K~~r~~e~A~~~~~P~I~~~dsgG~r~~e~~~ 140 (251)
T d1vrga1 71 LPR--DGVITGVGEINGRKVAVFSQDFT--------VMGGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQEGVD 140 (251)
T ss_dssp CGG--GGEEEEEEEETTEEEEEEEECTT--------TGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGGGTHH
T ss_pred ccc--cceEEEEEEEccEEEEEeeehhh--------hhhcccchHHHHHHHHHHHHHHHcCCCEEEEEcCCCcccccccc
Confidence 345 59999999999999999999999 59999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHHhhhccccchHHHHHHhc
Q psy14493 171 ERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCASILWKTSKRASDAAEALG 249 (318)
Q Consensus 171 ~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~il~~~~~~~~~a~e~~~ 249 (318)
.+.+++.++.....+++ .+|+|++|+|+|+||++|.++++|++||.+. +++++.||......+... ...++.
T Consensus 141 ~l~~~~~~~~~~~~~s~-~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~aGp~vv~~~~ge~-~~~eel----- 213 (251)
T d1vrga1 141 ALAGYGEIFLRNTLASG-VVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITGPNVIKAVTGEE-ISQEDL----- 213 (251)
T ss_dssp HHHHHHHHHHHHHHHTT-TSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSSCHHHHHHHHCCC-CCHHHH-----
T ss_pred ccccchHHHHHHHHHCC-CCCEEEEEccCccccceehhhhCceEEEEccceeEEecCchhhhhhcCCc-CChHHc-----
Confidence 98888889888877776 5999999999999999999999999999876 899999999766555432 222221
Q ss_pred ccHHHH-HHcCCcceeecCccccCCCCchHHHHHHHHHHhhc
Q psy14493 250 LTADKL-KSIGLINKIIKEPIAYSGGIDSSVLLDISFTLFCN 290 (318)
Q Consensus 250 ~~a~~a-~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~ 290 (318)
-+++.. .+.|++|.+++ |....+..+.+++..
T Consensus 214 Gga~~h~~~sG~~D~v~~---------de~~a~~~ir~lLs~ 246 (251)
T d1vrga1 214 GGAMVHNQKSGNAHFLAD---------NDEKAMSLVRTLLSY 246 (251)
T ss_dssp HBHHHHHHTSCCCSEEES---------SHHHHHHHHHHHHTT
T ss_pred cchhhhhhccccceEEEC---------CHHHHHHHHHHHHHh
Confidence 244443 35799999996 445555555555543
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=1.7e-39 Score=295.57 Aligned_cols=242 Identities=17% Similarity=0.172 Sum_probs=188.8
Q ss_pred HHHHHHHHHhhhhhcC-CCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhcccccccccCCccC
Q psy14493 15 LEKKIEKLRSLQFSSN-IDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHELHGDRNYG 93 (318)
Q Consensus 15 ~~~~~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d~~~el~~~~~~~ 93 (318)
...+|++|+++++... .++.++++|||++ ||||+||||+.|+|+++|.+++-+...-+.-........++
T Consensus 5 ~~~~l~eL~~r~~~~~~~gg~~~v~k~h~~---------GkltaReRi~~L~D~gsF~E~~~~~~~~~~~~~~~~~~~~~ 75 (258)
T d1xnya1 5 TAGKLADLRRRIEEATHAGSARAVEKQHAK---------GKLTARERIDLLLDEGSFVELDEFARHRSTNFGLDANRPYG 75 (258)
T ss_dssp HHHHHHHHHHHHHHHHTCSCHHHHHHHHHT---------TCCCHHHHHHHHSCTTCCEEESTTCCCCCCGGGGGGCCCTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHc---------CCCCHHHHHHHHcCCCCCccccchhcccccccccccccCCC
Confidence 3467888888888754 5556699999999 99999999999999999776532111111100111122344
Q ss_pred CCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhc
Q psy14493 94 DDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERG 173 (318)
Q Consensus 94 d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g 173 (318)
+++|+|+|+|||++|+|+++|++ ++||++++.+++|+.|++++|.++++|+|+|+||+|++++++...++
T Consensus 76 --d~vv~G~G~I~G~~v~v~a~Dft--------v~gGS~g~~~~~K~~r~~e~A~~~~lPlI~l~dsgGarm~e~~~~~~ 145 (258)
T d1xnya1 76 --DGVVTGYGTVDGRPVAVFSQDFT--------VFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVASLG 145 (258)
T ss_dssp --TTEEEEEEEETTEEEEEEEECTT--------SGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGGGTHHHHH
T ss_pred --CeeEEEEEEECCEEEEEEechhh--------hhcCccchhhHHHHHHHHHHHHHcCCceEEEecCCCcccCccccccc
Confidence 59999999999999999999999 59999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHHhhhccccchHHHHHHhcccH
Q psy14493 174 QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCASILWKTSKRASDAAEALGLTA 252 (318)
Q Consensus 174 ~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a 252 (318)
++..++..+..+++ .||+|++|+|+|+||++|.+++||+++|.+. |++++.||......+-.+ ...+++ -.+
T Consensus 146 ~~~~~~~~~~~~s~-~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~aGP~vv~~~~ge~-i~~eel-----gga 218 (258)
T d1xnya1 146 AYGEIFRRNTHASG-VIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGED-VGFEEL-----GGA 218 (258)
T ss_dssp HHHHHHHHHHHTTT-TSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCC-CCHHHH-----HBH
T ss_pred chhHHHHHHHHHcC-CCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEecCHHHHHHHhcCc-cChHHh-----ccH
Confidence 99999999888887 5999999999999999999999999999875 999999999765554333 222332 233
Q ss_pred HHH-HHcCCcceeecCccccCCCCchHHHHHHHHHHh
Q psy14493 253 DKL-KSIGLINKIIKEPIAYSGGIDSSVLLDISFTLF 288 (318)
Q Consensus 253 ~~a-~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~ 288 (318)
... ...|++|.+++... |....+..++..+
T Consensus 219 ~~h~~~sG~~d~v~~de~------ea~~~~r~~Ls~l 249 (258)
T d1xnya1 219 RTHNSTSGVAHHMAGDEK------DAVEYVKQLLSYL 249 (258)
T ss_dssp HHHHHTSSCCSEEESSHH------HHHHHHHHHHHHS
T ss_pred HHHHhcCCeeEEEeCCHH------HHHHHHHHHHHhc
Confidence 333 45799999996322 4444444444443
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.4e-39 Score=295.56 Aligned_cols=243 Identities=16% Similarity=0.144 Sum_probs=190.8
Q ss_pred HHHHHHHHHHhhhhhcCCC-cHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhcccccccccCCcc
Q psy14493 14 KLEKKIEKLRSLQFSSNID-TSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHELHGDRNY 92 (318)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d~~~el~~~~~~ 92 (318)
....+|++|+++++.+..+ +.++++|||++ |||||||||+.|+||++|.+++-+...-+...+......+
T Consensus 5 ~~~~~l~el~~r~~~a~~~gg~~~~~r~h~~---------GkltaReRi~~L~D~gsF~E~~~l~~~~~~~~~~~~~~~~ 75 (258)
T d2a7sa1 5 TTAGKLAELHKRREESLHPVGEDAVEKVHAK---------GKLTARERIYALLDEDSFVELDALAKHRSTNFNLGEKRPL 75 (258)
T ss_dssp SHHHHHHHHHHHHHHTTSTTCHHHHHHHHHT---------TCCCHHHHHHHHSCTTCCEEESTTCCCCCCSTTCTTCCCT
T ss_pred hHHHHHHHHHHHHHHHHhccCHHHHHHHHHc---------CCCCHHHHHHHHcCCCCcEEehhcccccchhhhccccccc
Confidence 4567889999988887554 55699999999 9999999999999999976654221100000011111112
Q ss_pred CCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhh
Q psy14493 93 GDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEER 172 (318)
Q Consensus 93 ~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~ 172 (318)
+ +++|+|+|+|||++|+|+++|++ ++||++++.+.+|+.|++++|.++++|+|.|+||+|++++++...+
T Consensus 76 ~--d~vV~G~G~I~G~~v~v~a~Dft--------~~gGS~g~~~g~K~~ra~e~A~~~~lP~I~l~dsgGar~~eg~~~~ 145 (258)
T d2a7sa1 76 G--DGVVTGYGTIDGRDVCIFSQDAT--------VFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQEGVVSL 145 (258)
T ss_dssp T--TTEEEEEEESSSSEEEEEEECTT--------SGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGGGCTHHH
T ss_pred c--ccceeEEEEeccceEEEecccce--------EeCCccchhhhhHHHHHHHHHHhcCCceEEEeccCCcccccccccc
Confidence 3 69999999999999999999999 5999999999999999999999999999999999999999998888
Q ss_pred chHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHHhhhccccchHHHHHHhccc
Q psy14493 173 GQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCASILWKTSKRASDAAEALGLT 251 (318)
Q Consensus 173 g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~ 251 (318)
.++..++..+..++. .||+|++|+|+|+||++|.++++|+++|.+. |++++.||+.....+-.. ...+++ ...
T Consensus 146 ~~~~~~~~~~~~~~~-~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~aGP~vV~~~~ge~-~~~eeL----Gga 219 (258)
T d2a7sa1 146 GLYSRIFRNNILASG-VIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGPDVIKTVTGEE-VTMEEL----GGA 219 (258)
T ss_dssp HHHHHHHHHHHHHTT-TSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCBSSCHHHHHHHHCCC-CCHHHH----HBH
T ss_pred cchhhHHHHHHHHcC-CCCEEEEEecCcccHHHHHHHhccceEeecCceEEEccChhHHHHhcCCc-cChhhc----cCH
Confidence 888899888887776 5999999999999999999999999999876 999999999765554332 222222 122
Q ss_pred HHHHHHcCCcceeecCccccCCCCchHHHHHHHHHHhhc
Q psy14493 252 ADKLKSIGLINKIIKEPIAYSGGIDSSVLLDISFTLFCN 290 (318)
Q Consensus 252 a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~ 290 (318)
...+.+.|.+|.+++ |....+....++++.
T Consensus 220 ~~h~~~sG~~D~v~~---------de~~a~~~~r~~Ls~ 249 (258)
T d2a7sa1 220 HTHMAKSGTAHYAAS---------GEQDAFDYVRELLSY 249 (258)
T ss_dssp HHHHHTSCCCSEEES---------SHHHHHHHHHHHHHH
T ss_pred hHhhhhccccceEeC---------CHHHHHHHHHHHHHh
Confidence 334567899999996 455555555555544
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=100.00 E-value=6.6e-40 Score=302.05 Aligned_cols=249 Identities=16% Similarity=0.166 Sum_probs=182.7
Q ss_pred cchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhcccccc
Q psy14493 6 LNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHE 85 (318)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d~~~e 85 (318)
..+++|.+.++..+++|+++.+....++ ...+|+|+| ||||+||||+.++|+++|.++ +.+..
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~r---------gkltaReRI~~LlD~gSf~E~-------~~l~~ 83 (287)
T d1pixa2 21 KADAANEEQLKKIEEEIHQLIKEAQEAG-KADADVNKR---------GELTALQRIEKLVEPGSWRPL-------NTLFN 83 (287)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHCS-SCHHHHHHT---------TCCCHHHHHHHHSCTTCCEEE-------STTCC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcC-chHHHHHHh---------CCCCHHHHHHHHcCCcchhhH-------HHHhh
Confidence 3366677777777677766655543322 245789999 999999999999999996542 12222
Q ss_pred cccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy14493 86 LHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP 165 (318)
Q Consensus 86 l~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~ 165 (318)
..++..++ +++|||+|+|||++|+|++||++ ++||++++.+++|+.|++++|.++++|+|+|+||+|+++
T Consensus 84 ~~~~~~~~--~~vV~G~g~i~G~~v~v~a~D~t--------~~gGs~~~~~~~K~~r~~~lA~~~~lP~I~l~ds~Ga~~ 153 (287)
T d1pixa2 84 PQGNKNGS--VAIVKGLGRVNGKWCVVVASDNK--------KLAGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKF 153 (287)
T ss_dssp TTCCTTSC--CSEEEEEEEETTEEEEEEEECTT--------TTTTEECTTHHHHHHHHHHHHHHHTCCEEEEECCCEECG
T ss_pred hccCCCCC--CCceEEEeecccceEEEEEeccc--------cccccchhhHHHHHHHHHHhhhhcCCCEEEEecCCcccC
Confidence 23333344 59999999999999999999999 599999999999999999999999999999999999999
Q ss_pred chhHHhhch---HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccchH
Q psy14493 166 GIDAEERGQ---SEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRAS 242 (318)
Q Consensus 166 ~~~~e~~g~---~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~~~ 242 (318)
+++.+.++. .+.++..+..+|..+||+|++|+|+|+|||||...++|++++++++++++.||.....+.........
T Consensus 154 ~~~~e~~~~~~~~g~~~~~~a~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~~~ 233 (287)
T d1pixa2 154 DEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLE 233 (287)
T ss_dssp GGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHH
T ss_pred CcchhhccchhhHHHHHHHHHHHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhhhh
Confidence 998887653 46778888899999999999999999999999754455666666799999999854433322222211
Q ss_pred ---HHHHHh-------c-ccHHH-HHHcCCcceeecCccccCCCCchHHHHHHHHHHhhc
Q psy14493 243 ---DAAEAL-------G-LTADK-LKSIGLINKIIKEPIAYSGGIDSSVLLDISFTLFCN 290 (318)
Q Consensus 243 ---~a~e~~-------~-~~a~~-a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~ 290 (318)
+..+.. . -.+.. +...|.+|.+++ |....+..+.+++..
T Consensus 234 ~~~ei~~~~ge~~~~eeLGGa~~H~~~sG~~d~v~~---------~e~~ai~~~r~~ls~ 284 (287)
T d1pixa2 234 YANEIADMVDRTGKTEPPGAVDIHYTETGFMREVYA---------SEEGVLEGIKKYVGM 284 (287)
T ss_dssp HHHHHHHHHHTTCCCCCSSBHHHHTTTSCCSCEEES---------SHHHHHHHHHHHHHT
T ss_pred hHHHHHhhhcccccccccccHHHhhhhcccceeecC---------CHHHHHHHHHHHHhh
Confidence 111111 1 13333 335699999997 344444544454443
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.4e-32 Score=259.01 Aligned_cols=220 Identities=18% Similarity=0.204 Sum_probs=169.2
Q ss_pred CCHHHHHH-hhcCCCCCchh-hHHh----------hhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCC
Q psy14493 55 LTPWQISQ-IARHPKRPYTL-DYIR----------EIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120 (318)
Q Consensus 55 ltareRi~-~~~d~~~~~~~-~~i~----------~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~ 120 (318)
.++++|.. ...+..+|||+ .+|+ .+||. |.|+.++ || +++|||+|||+|+||||||||+.+.
T Consensus 10 ~Dp~dR~v~~~P~~~~pyD~R~~i~g~~~~~~~~~~i~D~~sF~E~~~~--~a--~svVtG~ARL~G~PVGVIAne~~~~ 85 (404)
T d1uyra2 10 KDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSG--WA--KGVVVGRARLGGIPLGVIGVETRTV 85 (404)
T ss_dssp SSCSSSCCCCCCCSSSCCCHHHHHHCEEETTEEECCSSCTTCCEEESTT--SC--TTEEEEEEEETTEEEEEEEECCSCE
T ss_pred CCCcccccccCCCCCCCCCHHHHHhcCccccccccccccCCceeehhhc--cC--CceEEEEEEECCEEEEEEEeCcccc
Confidence 45666642 22233469996 6786 69994 9999855 99 7999999999999999999997541
Q ss_pred ------------c-cchhhccCCCCCHHHHHHHHHHH-HHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHh
Q psy14493 121 ------------V-NERIIRNFGMAKPEGYRKAVRLM-HIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMS 186 (318)
Q Consensus 121 ------------~-~~~~~~~gG~~~~~~~~K~~r~~-~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s 186 (318)
+ +......||.|.+.++.|.+|++ ++|+.+++|||+|+|++||.+|..+|..|+++++++++.+++
T Consensus 86 ~g~i~aDpa~~~s~~~~~~~~Ggv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~pGF~~G~~~E~~gilr~GA~iv~A~~ 165 (404)
T d1uyra2 86 ENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALV 165 (404)
T ss_dssp EEEECCCTTCSSCCCEEEEECTTCBCHHHHHHHHHHHHHHHTTSCCCEEECCCCCCBCC------CTHHHHHHHHHHHHH
T ss_pred cCCccCCcccccchhhhhhccCCccCchHHHHHHHHHHHhhhccccceEEeecCCcccCcHHHHHHHHHHHHHHHHHHHH
Confidence 1 22356789999999999999998 599999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEc--CCCchhhhhhhc----ccc--EEEEEcccEEEEeChhHHHHhhhccccchHH---------------
Q psy14493 187 KLKVPLISTII--GEGGSGGALAIA----VSD--ITLMLQYAIYSVISPEGCASILWKTSKRASD--------------- 243 (318)
Q Consensus 187 ~~~vP~IavV~--G~~~ggga~~~~----~~D--~via~~~A~i~v~gP~~~a~il~~~~~~~~~--------------- 243 (318)
.+++|+|++|. |++ +||+|++. .++ ++++||+|++++|+|++++.|.|+++...+.
T Consensus 166 ~~~vP~i~vI~~~g~~-~GGa~vv~~~~~~~~~~~~yAwP~a~~gVm~pEGav~I~fr~e~~~~~~~r~d~~~~el~~~l 244 (404)
T d1uyra2 166 DYKQPIIIYIPPTGEL-RGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRLDDKYRELRSQL 244 (404)
T ss_dssp TCCSCEEEEECTTCEE-EHHHHHTTCGGGGTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHC-----------
T ss_pred hcCCCEEEEEeCCccc-chhhhhcccCccCCccceEEECCccccccCChhhhhhheecchhhhcchhhhHHHHHHHHHHh
Confidence 99999999996 554 45666643 234 4799999999999999999999987521100
Q ss_pred -----HHH-------Hh---------------------cccHHHHHHcCCcceeecCccccCCCCchHHHHHHHHH
Q psy14493 244 -----AAE-------AL---------------------GLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLDISFT 286 (318)
Q Consensus 244 -----a~e-------~~---------------------~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~ 286 (318)
+.+ .+ .-++..+++.|.||+||+ |. |||..+...++
T Consensus 245 ~~~~~a~e~~~~l~~~i~~re~~l~p~y~qvA~~Fadlhdt~~Rm~~kG~I~~iv~-w~------~tR~~~~~~lr 313 (404)
T d1uyra2 245 SNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELE-WT------EARRFFFWRLR 313 (404)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTTSSHHHHHHHTCSSEEEC-HH------HHHHHHHHHHH
T ss_pred cCcccCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcHHHHHhcCccccccC-HH------HhHHHHHHHHH
Confidence 000 00 016888999999999999 67 99999877666
|
| >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD species: Escherichia coli [TaxId: 562]
Probab=99.98 E-value=4.3e-32 Score=247.02 Aligned_cols=217 Identities=14% Similarity=0.090 Sum_probs=169.9
Q ss_pred CCCCHHHHHHhhcCCCCCchhhHHhhhcc--ccccccc--------CCccCCCCcEEEEEEEEcCEEEEEEeecCCCCcc
Q psy14493 53 SKLTPWQISQIARHPKRPYTLDYIREIFT--DIHELHG--------DRNYGDDLSIIGVLARINGESCMVIGHQKGRNVN 122 (318)
Q Consensus 53 ~~ltareRi~~~~d~~~~~~~~~i~~~~d--~~~el~~--------~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~ 122 (318)
-+||+|||++.++|+++|.+++-...-.| .|..... ....+.++++|+|+|+|||++|+|+++|++
T Consensus 31 ~~ltaReRi~~L~D~gsf~Ei~~~~~~~d~l~~~d~~~y~~~~~~~~~~tg~~d~vv~g~G~i~G~~v~v~a~Dft---- 106 (263)
T d2f9yb1 31 MRMTARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKGTLYGMPVVAAAFEFA---- 106 (263)
T ss_dssp CCCCHHHHHHHHSCSSCCEECSCSCCCCCSSCCSSGGGTC------CCSSCCSSSEEEEECEETTEECBEEEECTT----
T ss_pred CCcCHHHHHHHHccCCceEEeCCCcccCCchhcccccccccchhhhccccCCCCceEEEEEEECCEEEEEEeeeeh----
Confidence 57999999999999999877642110011 1211110 001112369999999999999999999999
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCch
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGS 202 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~g 202 (318)
++||+++..+.+|+.|++++|.+.++|+|.|.||+|++++++...+.++..+...+..++..+||+|++++|+|+|
T Consensus 107 ----v~gGS~g~~~~~Ki~~a~e~A~~~~lPlI~~~~sgG~r~~e~~~sl~~~~~~~~~~~~~~~~~vP~I~v~~g~~~G 182 (263)
T d2f9yb1 107 ----FMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMG 182 (263)
T ss_dssp ----STTTCBCTHHHHHHHHHHHHHHHHTCCEEEEEEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEH
T ss_pred ----hhccccccchhhHHhHHHHHHHHcCCCeEEEecCCCcccccccchhhcchhHHHHHHHHHhCCCceEEEecCCcch
Confidence 5999999999999999999999999999999999999999999988888888888888877789999999999999
Q ss_pred hhhhhhcc-ccEEEEEcccEEEEeChhHHHHhhhccccchHHHHHHhcccHHHHHHcCCcceeecCccccCCCCchHHHH
Q psy14493 203 GGALAIAV-SDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPIAYSGGIDSSVLL 281 (318)
Q Consensus 203 gga~~~~~-~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll 281 (318)
|+++.+++ +|++++.++|+|+++||+.....+-... . ++ ..++....+.|.||.|++ .. +...-|
T Consensus 183 G~aa~~~~~~d~i~~~~~s~i~~aGP~vve~~~ge~~-~-e~-----~g~a~~~~~~G~iD~vv~-~e------e~~~~l 248 (263)
T d2f9yb1 183 GVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKL-P-PG-----FQRSEFLIEKGAIDMIVR-RP------EMRLKL 248 (263)
T ss_dssp HHHTTGGGCCSEEEECTTCBEESSCHHHHHHHHTSCC-C-TT-----TTBHHHHGGGTCCSEECC-HH------HHHHHH
T ss_pred HHHhhhhhcCceEeeecceeeeccCHHHHhhhcCCcC-C-hh-----hccHHHHHhCCCCCEEEC-CH------HHHHHH
Confidence 99887665 5666667779999999997766554322 1 12 257778888999999997 33 445666
Q ss_pred HHHHHHhhcc
Q psy14493 282 DISFTLFCNY 291 (318)
Q Consensus 282 ~~~~~l~~~~ 291 (318)
..+++++..+
T Consensus 249 ~~~l~~L~~~ 258 (263)
T d2f9yb1 249 ASILAKLMNL 258 (263)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhhC
Confidence 7777776543
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=2.4e-24 Score=199.40 Aligned_cols=183 Identities=12% Similarity=0.103 Sum_probs=147.9
Q ss_pred ccccccCCccCC-CCcEEEEEEEE------cCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEE
Q psy14493 83 IHELHGDRNYGD-DLSIIGVLARI------NGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIF 155 (318)
Q Consensus 83 ~~el~~~~~~~d-~~~vVtG~g~i------~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV 155 (318)
|.|.. +.+|. +.++|+|.+++ +||+|+|++||+| +++||+++...+|..|+.++|.+.++|+|
T Consensus 69 l~e~~--r~~G~n~~gmV~g~~~i~t~eyp~GR~vvvianD~T--------~~~GS~g~~e~~k~~~a~elA~~~~iP~I 138 (333)
T d1uyra1 69 LTEVE--REPGANAIGMVAFKITVKTPEYPRGRQFVVVANDIT--------FKIGSFGPQEDEFFNKVTEYARKRGIPRI 138 (333)
T ss_dssp EEEEC--CCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECTT--------SGGGCBCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred eeecc--ccCCCCCCCeEeEEEEEcCCcCCCCcEEEEEEECCc--------eecCccCHHHHHHHHHHHHHHHHcCCCEE
Confidence 54544 34453 35899999999 8999999999999 59999999999999999999999999999
Q ss_pred EEecCCCCCCch--------------------------------------------------------------------
Q psy14493 156 TFIDTPGAFPGI-------------------------------------------------------------------- 167 (318)
Q Consensus 156 ~lvDs~Ga~~~~-------------------------------------------------------------------- 167 (318)
+|.|++|+|++.
T Consensus 139 ~l~~~sGARi~~~~~~~~~~~v~~~~~~~p~~G~~ylyl~~~~~~~~~~~~~~~~v~~~~~~~~ge~~~~i~~i~G~~~g 218 (333)
T d1uyra1 139 YLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDG 218 (333)
T ss_dssp EEECCCCBCCCCCGGGTTTCEEEESSTTCGGGCEEEEEECHHHHHHHHHTTCGGGEEEEEEEETTEEEEEEEEECCSSSC
T ss_pred EEEcCCCcCcccccccccccccccCCCCCcccCcceeecCHHHHHhhhhcccccceeeeeeccCCceeeeeccccccccC
Confidence 999999999974
Q ss_pred -hHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhcccc-chHHHH
Q psy14493 168 -DAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSK-RASDAA 245 (318)
Q Consensus 168 -~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~-~~~~a~ 245 (318)
+.|.+...+.++.....+++. ||+|++|+|+|+|+|||.+.++|++||++++.|+++||...-.++-+..- ..+++
T Consensus 219 ~GVe~L~g~g~ia~~~s~a~~~-iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~ltGp~~l~~~lG~eVy~s~~eL- 296 (333)
T d1uyra1 219 LGVECLRGSGLIAGATSRAYHD-IFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPAINKMLGREVYTSNLQL- 296 (333)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH-SCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESSCHHHHHHHSSSCCCSCTHHH-
T ss_pred CCcchhHHHHHHHHHHHHhcCC-CCEEEEEeCCccccceeecccccEEEEeCCceEEeeCHHHHHHhcCccccCChhHh-
Confidence 333344567888888888885 99999999999999999999999999999999999999877666654321 22222
Q ss_pred HHhcccHHHHHHcCCcceeecCccccCCCCchHHHHHHHHHHhhc
Q psy14493 246 EALGLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLDISFTLFCN 290 (318)
Q Consensus 246 e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~ 290 (318)
-.+.-..+.|++|-+++ |...-+..+.++++.
T Consensus 297 ----GG~~i~~~nGv~h~~a~---------dd~eai~~i~~~LSy 328 (333)
T d1uyra1 297 ----GGTQIMYNNGVSHLTAV---------DDLAGVEKIVEWMSY 328 (333)
T ss_dssp ----HSHHHHHHHTSSSEEES---------SHHHHHHHHHHHHTT
T ss_pred ----CCHhHHhhCCCceEEeC---------CHHHHHHHHHHHHhh
Confidence 35566667999999997 455555566666554
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.1e-09 Score=97.30 Aligned_cols=139 Identities=21% Similarity=0.299 Sum_probs=103.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-chhHHh-------------hchHHHHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP-GIDAEE-------------RGQSEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~-~~~~e~-------------~g~~~~~~~~~~~~s~~~vP~I 193 (318)
...+++....+.+..+++.+.+...-+|.|.-.+..+. |-.... ......+...+..+..+++|+|
T Consensus 23 ~~Nals~~~~~el~~al~~~~~d~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~I 102 (258)
T d2fw2a1 23 EKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIV 102 (258)
T ss_dssp STTCBCHHHHHHHHHHHHHHHHSSCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCccccccccccchhhhcccccccchhhHHHHHHHHHHHhhhccceeee
Confidence 45789999999999999888776666777766555443 211110 0112345667777888999999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|.|||+..+..||++|+.++++|++ +.|.++.....++..+...+.+.+ .+++.++.+.|+||+
T Consensus 103 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~ 182 (258)
T d2fw2a1 103 VSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQ 182 (258)
T ss_dssp EEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSCSE
T ss_pred eecccccccccccccccccccceecccceeeccccccccccccccccchhhcCccccchhhccCcccccccccccccccc
Confidence 9999999999999998999999999998877 345555555555545555555554 479999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
|++
T Consensus 183 vv~ 185 (258)
T d2fw2a1 183 VFL 185 (258)
T ss_dssp EEC
T ss_pred ccc
Confidence 997
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=1.4e-09 Score=95.84 Aligned_cols=139 Identities=20% Similarity=0.262 Sum_probs=99.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCc-----hhH-------Hh--hchHHHHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPG-----IDA-------EE--RGQSEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~-----~~~-------e~--~g~~~~~~~~~~~~s~~~vP~I 193 (318)
...+++......+..+++.+++...-+|.+.-.++++.. +-. +. ........+.+..+..+++|+|
T Consensus 23 ~~Nals~~~~~~l~~~l~~~~~d~~v~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvI 102 (245)
T d2f6qa1 23 KKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLI 102 (245)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHSSCSEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEE
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCceEEeecCCCccccCCccchhhhcccccccccccchhhhHHHHHHhhhhhcCCceE
Confidence 346899999999999999887765446666555544431 100 00 0111233456677888999999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|.|||+..+..||++|+.+++.|++ ..|.++....+++..+...+.+.+ .+++.++.+.|+||+
T Consensus 103 a~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~ 182 (245)
T d2f6qa1 103 AVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTE 182 (245)
T ss_dssp EEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSE
T ss_pred EEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccchhhhhcccccccccccccccccccc
Confidence 9999999999999988899999999999888 345544444444445555555554 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
|++
T Consensus 183 vv~ 185 (245)
T d2f6qa1 183 VFP 185 (245)
T ss_dssp EEC
T ss_pred cCC
Confidence 997
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=99.05 E-value=4.5e-09 Score=92.52 Aligned_cols=138 Identities=17% Similarity=0.169 Sum_probs=100.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHH------------hhchHHHHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAE------------ERGQSEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e------------~~g~~~~~~~~~~~~s~~~vP~I 193 (318)
...+++......+.++++.+.+ ..+-+|.|.-.++.+. |.... ...........+..+..+++|+|
T Consensus 19 ~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvI 98 (253)
T d1uiya_ 19 RRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTV 98 (253)
T ss_dssp GTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcccccchhhhhhhhhhHHhcCCCCEE
Confidence 4468999999999999988865 5688888876555443 21111 01112345556677788899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|.|||...+..||++|+.+++.+++ +.|.++.. .+.+..+...+.+.+ .+++.++.+.|+||+
T Consensus 99 aav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~~~~~-~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~ 177 (253)
T d1uiya_ 99 AAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALVSV-ILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNR 177 (253)
T ss_dssp EEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHHHH-HHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSE
T ss_pred EEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccccccccchh-hhhcccCHHHHHHHhhcCcCCCHHHHHHhCCCcc
Confidence 9999999999999988899999999998887 23434333 334445555555544 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
|++
T Consensus 178 v~~ 180 (253)
T d1uiya_ 178 IAP 180 (253)
T ss_dssp EEC
T ss_pred ccc
Confidence 997
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=2.1e-09 Score=95.55 Aligned_cols=153 Identities=10% Similarity=0.095 Sum_probs=108.6
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCC-------CCCCchh----HHhhc
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTP-------GAFPGID----AEERG 173 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~-------Ga~~~~~----~e~~g 173 (318)
++|.-..|--|++. ...+++....+.+.++++.+++..+-+|.|.-++ |+.+.+- .+...
T Consensus 10 ~~~~v~~Itlnrp~---------~~Nal~~~~~~~l~~al~~~~~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~~ 80 (261)
T d1ef8a_ 10 TINKVAVIEFNYGR---------KLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLS 80 (261)
T ss_dssp EETTEEEEEECCGG---------GTTCCCHHHHHHHHHHHHHTCSTTCCEEEEECCTTCSEEECCSCSTTC-----CTTC
T ss_pred EECCEEEEEEcCCC---------CCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeccccchhhcccccccccccCCccccc
Confidence 44444444455554 3468999999999999988876667677776543 3333211 11111
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHH
Q psy14493 174 QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEA 247 (318)
Q Consensus 174 ~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~ 247 (318)
........+..+..+++|+|+.|.|.|+|||+..+..||++|+.++++++. +.|..+.....++..+...+.+.
T Consensus 81 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~a~~~ 160 (261)
T d1ef8a_ 81 YDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKEL 160 (261)
T ss_dssp TTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHH
T ss_pred cccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCccccccc
Confidence 123455677778888999999999999999999998999999999998877 34555555555555555555555
Q ss_pred h----cccHHHHHHcCCcceeec
Q psy14493 248 L----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 248 ~----~~~a~~a~~~G~vD~ii~ 266 (318)
+ .+++.++.+.|+||++++
T Consensus 161 ~l~g~~~~a~eA~~~Glv~~vv~ 183 (261)
T d1ef8a_ 161 IFTASPITAQRALAVGILNHVVE 183 (261)
T ss_dssp HHHCCCEEHHHHHHTTSCSEEEC
T ss_pred cccCceEcHHHHHHcCCcceeee
Confidence 4 489999999999999996
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=99.03 E-value=6.6e-09 Score=90.68 Aligned_cols=138 Identities=17% Similarity=0.112 Sum_probs=101.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCC-CCC-chhHHh----------hchHHHHHHHHHHHhcCCCCEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPG-AFP-GIDAEE----------RGQSEAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~G-a~~-~~~~e~----------~g~~~~~~~~~~~~s~~~vP~Ia 194 (318)
...+++....+.+..+++.+.+. ++-+|.|.-++| ++. |..... ..........+..+..+++|+|+
T Consensus 20 ~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa 99 (230)
T d2a7ka1 20 KHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIA 99 (230)
T ss_dssp TTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchhhhhhhhhcccchhcceee
Confidence 45789999999999999888765 577777765443 443 211111 11234566677788889999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
+|.|.|.|||+.....||++||.++++|++ +.|.+++..+ .+..+...+.+.+ .+++.++.+.|+||++
T Consensus 100 av~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~l-~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 178 (230)
T d2a7ka1 100 AVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAAIL-GFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQV 178 (230)
T ss_dssp EECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHHHH-HHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEE
T ss_pred ecccccccccccchhccchhhccccchhhhcccccccccccccccc-ccccccccccccccccccchHHHHHHhhhcccC
Confidence 999999999999988899999999998876 3466655544 3334444554543 5899999999999999
Q ss_pred ec
Q psy14493 265 IK 266 (318)
Q Consensus 265 i~ 266 (318)
++
T Consensus 179 v~ 180 (230)
T d2a7ka1 179 VE 180 (230)
T ss_dssp EC
T ss_pred CC
Confidence 96
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.03 E-value=1.8e-09 Score=96.18 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=114.1
Q ss_pred EEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-----chhHH-------
Q psy14493 104 RINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-----GIDAE------- 170 (318)
Q Consensus 104 ~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-----~~~~e------- 170 (318)
.++|.-..|.-|+|. ...+++......+..+++.+++. .+-+|.|.-.+.++. .+-..
T Consensus 10 ~~~~~v~~Itlnrp~---------~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~ 80 (266)
T d1pjha_ 10 RIEGPFFIIHLINPD---------NLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTN 80 (266)
T ss_dssp EEETTEEEEEECCGG---------GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------
T ss_pred EEECCEEEEEEcCCC---------cCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhccccccc
Confidence 456766677777765 44689999999999999888764 578888866443332 11000
Q ss_pred ---------hhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEE------eChhHHHHhh
Q psy14493 171 ---------ERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSV------ISPEGCASIL 234 (318)
Q Consensus 171 ---------~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v------~gP~~~a~il 234 (318)
..............+..+++|+|++|.|.|+|||+..+..||++||.++ +++++ +.|..+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~ 160 (266)
T d1pjha_ 81 KYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVS 160 (266)
T ss_dssp CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccccc
Confidence 0011234455666788889999999999999999999889999999876 67665 4566666666
Q ss_pred hccccchHHHHHHh----cccHHHHHHcCCcceeecCcc
Q psy14493 235 WKTSKRASDAAEAL----GLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 235 ~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~~p~ 269 (318)
+++..+...+.+.+ .+++.++.+.|+||+|++.|.
T Consensus 161 l~r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~ 199 (266)
T d1pjha_ 161 LPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPS 199 (266)
T ss_dssp HHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCT
T ss_pred cccccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchh
Confidence 66655555555554 589999999999999998653
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=99.00 E-value=4.7e-09 Score=93.39 Aligned_cols=138 Identities=15% Similarity=0.138 Sum_probs=103.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhH----------H-hhchHHHHHHHHHHHhcCCCCEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDA----------E-ERGQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~----------e-~~g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
-.+++....+.+.++++.+.+ ..+-+|.|.-.++++. |-.. + ...........+..+..+++|+|++
T Consensus 30 ~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa~ 109 (263)
T d1wz8a1 30 LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAA 109 (263)
T ss_dssp GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhcccccccccchhhhhHHHHHhhhhhcceeee
Confidence 358999999999999987765 5577777766554443 2111 1 1112345566667777889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|||...+..||++|+.+++++++ +.|..+...+++...+...+.+.+ .+++.++.+.|+||+|+
T Consensus 110 v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~~l~l~g~~i~a~eA~~~Glv~~vv 189 (263)
T d1wz8a1 110 VEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAV 189 (263)
T ss_dssp ECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccchhHHHhcCCccccc
Confidence 99999999999998899999999999887 345555666666555555555544 58999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 190 ~ 190 (263)
T d1wz8a1 190 E 190 (263)
T ss_dssp C
T ss_pred c
Confidence 7
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.97 E-value=6e-09 Score=92.00 Aligned_cols=137 Identities=17% Similarity=0.199 Sum_probs=99.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC-CCCC-ch---------hHHhhchHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP-GAFP-GI---------DAEERGQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~-Ga~~-~~---------~~e~~g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
.+++......+..+++.+.+. .+-+|.|.-.+ +++. |. ..+.........+.+..+..+++|+|++|.
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~ 104 (249)
T d1sg4a1 25 NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAIN 104 (249)
T ss_dssp TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccccccccccchhhHHHHHhhhcCccccchhhc
Confidence 578999999999999887764 57777776543 3333 21 122223345666777788899999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE--------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV--------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v--------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|+|||+..+..||++||.+++.+.+ +.|..+.....++..+...+.+.+ .+++.++.+.|+||+++
T Consensus 105 G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~~A~~~Glv~~v~ 184 (249)
T d1sg4a1 105 GACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVV 184 (249)
T ss_dssp EEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSEEE
T ss_pred ccccccccccccccccceeeccccccccccccccccccccccccccccccccccccccccccccccHHHHHhhccccccC
Confidence 999999999988999999999976533 224444444444445544554443 58999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 185 ~ 185 (249)
T d1sg4a1 185 P 185 (249)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.95 E-value=1.7e-08 Score=91.86 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=103.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chh----HHhh--------chHHHHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GID----AEER--------GQSEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~----~e~~--------g~~~~~~~~~~~~s~~~vP~I 193 (318)
..-+++....+.+..+++.+.+. .+-+|.|.-.+.++. |-. .+.. .......+.+..+..+++|+|
T Consensus 28 ~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 107 (310)
T d1wdka4 28 SVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTV 107 (310)
T ss_dssp SSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEE
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccccchhhhhhhhHHHHHHHHhhcCCccce
Confidence 34689999999999999888764 577777776555443 211 1110 111234566778888999999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|+|||...+..||++|+.++++|++ +.|.++....+++..+...+.+.+ .+++.++.+.|+||+
T Consensus 108 aav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~a~~lll~g~~~~a~eA~~~Glv~~ 187 (310)
T d1wdka4 108 AAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDA 187 (310)
T ss_dssp EEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSE
T ss_pred eeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhhhhhhhhccccccCHHHHhhccCccE
Confidence 9999999999999998999999999998887 346555555555555555555554 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
|++
T Consensus 188 vv~ 190 (310)
T d1wdka4 188 VVT 190 (310)
T ss_dssp EEC
T ss_pred Ecc
Confidence 997
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=98.95 E-value=9.7e-09 Score=91.53 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=99.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh-------------c-hHHHHHHHHHHHhcCCCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER-------------G-QSEAIGHSIYVMSKLKVP 191 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~-------------g-~~~~~~~~~~~~s~~~vP 191 (318)
...+++......+..+++.+.+. .+-+|.|.-.++.+. |-..... . ........+..+..+++|
T Consensus 23 ~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP 102 (269)
T d1nzya_ 23 HRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRP 102 (269)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhcch
Confidence 44789999999999999887765 467777766554433 2111111 0 112234566677888999
Q ss_pred EEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCc
Q psy14493 192 LISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLI 261 (318)
Q Consensus 192 ~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~v 261 (318)
+|+.|.|.|.|||+..+..||++++.+++++.. ++|..+.....+...+...+.+.+ .+++.+|.+.|+|
T Consensus 103 vIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~a~~l~ltg~~i~a~eA~~~Glv 182 (269)
T d1nzya_ 103 VLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLV 182 (269)
T ss_dssp EEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSC
T ss_pred hehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChhhhhhccccccccchhHHHHcCCc
Confidence 999999999999999988999999999998777 344444444444444444444443 5899999999999
Q ss_pred ceeec
Q psy14493 262 NKIIK 266 (318)
Q Consensus 262 D~ii~ 266 (318)
|+|++
T Consensus 183 ~~vv~ 187 (269)
T d1nzya_ 183 SRVYP 187 (269)
T ss_dssp SCEEC
T ss_pred ccccc
Confidence 99996
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.94 E-value=8.2e-09 Score=92.07 Aligned_cols=139 Identities=19% Similarity=0.199 Sum_probs=99.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh--------------------chHHHHHHHHHHH
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER--------------------GQSEAIGHSIYVM 185 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~--------------------g~~~~~~~~~~~~ 185 (318)
.-.+++....+.+..+++.+.+. .+-+|.|.-.++++. |-..... .........+..+
T Consensus 24 ~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 103 (275)
T d1dcia_ 24 KRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVI 103 (275)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhcccccccccccchhhhhccchhhhHHHHHHH
Confidence 34689999999999999988764 577787766554433 1111000 0112334556677
Q ss_pred hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHH-HHh----cccHHH
Q psy14493 186 SKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAA-EAL----GLTADK 254 (318)
Q Consensus 186 s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~-e~~----~~~a~~ 254 (318)
..+++|+|++|.|.|.|||...+..||++|+.+++.++. +.|..+......+..+...+. +.+ .+++.+
T Consensus 104 ~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~~~~g~~~~~~~ll~~g~~~~a~e 183 (275)
T d1dcia_ 104 EKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADE 183 (275)
T ss_dssp HHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHH
T ss_pred HhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhcccccccccccccccccccccccccccccccccccchhh
Confidence 888999999999999999999998999999999998876 244444555555544433333 332 489999
Q ss_pred HHHcCCcceeec
Q psy14493 255 LKSIGLINKIIK 266 (318)
Q Consensus 255 a~~~G~vD~ii~ 266 (318)
+.+.|+||+|++
T Consensus 184 A~~~Glv~~v~~ 195 (275)
T d1dcia_ 184 ALDSGLVSRVFP 195 (275)
T ss_dssp HHHHTSSSEEES
T ss_pred hccCCCceeeee
Confidence 999999999997
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=8.6e-09 Score=91.77 Aligned_cols=139 Identities=19% Similarity=0.189 Sum_probs=102.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-CCCCc-hhHH---------hhchHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTP-GAFPG-IDAE---------ERGQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~-Ga~~~-~~~e---------~~g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++....+.+.++++.+.. ..+-+|.|.-.+ +++.+ .... ...........+..+..+++|+|+.
T Consensus 26 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaa 105 (266)
T d1hzda_ 26 GKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAA 105 (266)
T ss_dssp GTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchhhhhhhhHHHHHHHHHhcCCcccccc
Confidence 3468899999999999988765 567888876544 33332 1111 1112345666777888899999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|||+..+..||++|+.++++|++ +.|..+....+.+..+...+.+.+ .+++.++.+.|+||+|+
T Consensus 106 v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 185 (266)
T d1hzda_ 106 IDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVL 185 (266)
T ss_dssp ESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEE
T ss_pred cccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCCccCHHHhhccccccccc
Confidence 99999999999988999999999998876 345444445554545555555554 58999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 186 ~ 186 (266)
T d1hzda_ 186 E 186 (266)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.88 E-value=2.4e-09 Score=94.68 Aligned_cols=140 Identities=19% Similarity=0.178 Sum_probs=97.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh---c----hHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER---G----QSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~---g----~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
...++++...+.+..+++.+++. .+-+|.|.-.++.+. |...... . ........+..+..+++|+|++|.|
T Consensus 27 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G 106 (260)
T d1mj3a_ 27 ALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNG 106 (260)
T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEEECS
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhccchhhhhHHHHHHHHHHhccCCCeEEEEEcC
Confidence 44689999999999999887664 577887765554333 2111111 0 1112333345667789999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeecC
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIKE 267 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~~ 267 (318)
.|+|||+..+..||++||.++++|++ +.|..+.+...++..+...+.+.+ .+++.++++.|+|+++++.
T Consensus 107 ~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~ 185 (260)
T d1mj3a_ 107 YALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPV 185 (260)
T ss_dssp EEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECT
T ss_pred eEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHHHHHHHHcCcccCchhhccCCCceeeecc
Confidence 99999999988899999999999887 234444444444444444455544 5899999999999999973
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.80 E-value=4.6e-08 Score=88.26 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=106.4
Q ss_pred EEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCC------CchhHHh----
Q psy14493 103 ARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAF------PGIDAEE---- 171 (318)
Q Consensus 103 g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~------~~~~~e~---- 171 (318)
..+++.-+.|.-|.|. ...+++....+.+..+++.+++ ..+-+|.|.-.++.+ ...+.+.
T Consensus 24 ~~~~~gi~~ItlnRP~---------~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~ 94 (297)
T d1q52a_ 24 RHVDDATVRVAFNRPE---------VRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRG 94 (297)
T ss_dssp EESSSSEEEEEECCGG---------GTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC------
T ss_pred EEccCCEEEEEECCCC---------cCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhc
Confidence 4456665666667776 4478999999999999998876 478888887653211 1100000
Q ss_pred ------------------hchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEccc-EEEE------eC
Q psy14493 172 ------------------RGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYA-IYSV------IS 226 (318)
Q Consensus 172 ------------------~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A-~i~v------~g 226 (318)
.............+....+|+|++|.|.|+|||+.....||++|+.+++ .+++ +.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~ 174 (297)
T d1q52a_ 95 RSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSF 174 (297)
T ss_dssp -----------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCC
T ss_pred ccccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeeccccc
Confidence 0001123456667778899999999999999999998889999999874 5666 23
Q ss_pred hhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 227 PEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 227 P~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.+++.....+..+...+.+.+ .+++.+|++.|+||++++
T Consensus 175 p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~ 218 (297)
T d1q52a_ 175 DGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAE 218 (297)
T ss_dssp CCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEEC
T ss_pred cccccccccccccCccceeeccccccccchHhhhhhccccccCc
Confidence 4333434444444444555544 479999999999999997
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Probab=98.73 E-value=1.8e-07 Score=82.32 Aligned_cols=152 Identities=18% Similarity=0.178 Sum_probs=101.2
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chh---------HHhhc
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GID---------AEERG 173 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~---------~e~~g 173 (318)
++|.-..|--|++. ...+++......+..+++.+.+. .+-+|.|.-.+..+. |.. .+...
T Consensus 19 ~~~~v~~itln~p~---------~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~ 89 (249)
T d1szoa_ 19 RDGGVLLVTVHTEG---------KSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDE 89 (249)
T ss_dssp EETTEEEEEECBTT---------BSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHH
T ss_pred EECCEEEEEECCCC---------ccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhcccccchhh
Confidence 55554445555655 34788999999999999887764 466677765444433 111 11111
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE-------eChhHHHHhhhccccchHHHHH
Q psy14493 174 QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV-------ISPEGCASILWKTSKRASDAAE 246 (318)
Q Consensus 174 ~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v-------~gP~~~a~il~~~~~~~~~a~e 246 (318)
......+.+.++..+++|+|++|.|.|+||+ ..+..||++|+.+++.+.. .-|..+....+++..+...+.+
T Consensus 90 ~~~~~~~l~~~i~~~~~pvIa~v~g~~~GG~-~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~~a~~ 168 (249)
T d1szoa_ 90 IIFEGQRLLNNLLSIEVPVIAAVNGPVTNAP-EIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRY 168 (249)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEECSCBCSST-HHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHH
T ss_pred hhhhhhhhhhhcccCcccceeeecccccccc-ccccccccccccCCcEEEEeeccccccccccccccccccccCccceee
Confidence 2334566777888899999999998886544 5555699999999987642 1233334444444445445555
Q ss_pred Hh----cccHHHHHHcCCcceeec
Q psy14493 247 AL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 247 ~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.+ .+++.++.+.|+||+|++
T Consensus 169 l~ltg~~~~a~eA~~~Glv~~vv~ 192 (249)
T d1szoa_ 169 FLLTGQELDARTALDYGAVNEVLS 192 (249)
T ss_dssp HHHTTCEEEHHHHHHHTSCSEEEC
T ss_pred ecccCCCCCHHHHHHhCCcCcccC
Confidence 43 489999999999999997
|
| >d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=3e-06 Score=70.85 Aligned_cols=134 Identities=20% Similarity=0.218 Sum_probs=88.5
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHHH-h-CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIAE-K-FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A~-~-~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
++..+..|.++...+..+...+...+ + ..-||...+||||..+ .........+...+.|+.+++.|.|
T Consensus 16 ~riI~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v----------~~g~~i~d~i~~~~~~v~tv~~G~a 85 (183)
T d1yg6a1 16 ERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVI----------TAGMSIYDTMQFIKPDVSTICMGQA 85 (183)
T ss_dssp TTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCH----------HHHHHHHHHHHHSSSCEEEEEEEEE
T ss_pred cCEEEECCEECHHHHHHHHHHHHHhhhhccCCceEEEEeCCCccH----------HHHHHHHHHHHhCCCCEEEEEEEEe
Confidence 34446778888888888765555433 2 3469999999999543 3344555667777899999999999
Q ss_pred chhhhhhhcccc--EEEEEcccEEEEeChhHH-----HHhh--hccc----------------cchHHHHHHh----ccc
Q psy14493 201 GSGGALAIAVSD--ITLMLQYAIYSVISPEGC-----ASIL--WKTS----------------KRASDAAEAL----GLT 251 (318)
Q Consensus 201 ~ggga~~~~~~D--~via~~~A~i~v~gP~~~-----a~il--~~~~----------------~~~~~a~e~~----~~~ 251 (318)
++.|+..+..+| ..+|.|++.+.+=.|.+. ..+- .... ...++..+.+ .++
T Consensus 86 aS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~~~~~d~~lt 165 (183)
T d1yg6a1 86 ASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLS 165 (183)
T ss_dssp ETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEE
T ss_pred HHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccc
Confidence 998988765555 689999998876444311 0000 0000 0001111112 269
Q ss_pred HHHHHHcCCcceeec
Q psy14493 252 ADKLKSIGLINKIIK 266 (318)
Q Consensus 252 a~~a~~~G~vD~ii~ 266 (318)
|.+|.+.|+||+|+.
T Consensus 166 a~EAl~~GliD~Ii~ 180 (183)
T d1yg6a1 166 APEAVEYGLVDSILT 180 (183)
T ss_dssp HHHHHHHTSSSEECC
T ss_pred HHHHHHcCCCcEEec
Confidence 999999999999996
|
| >d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.28 E-value=4.3e-06 Score=70.66 Aligned_cols=134 Identities=19% Similarity=0.278 Sum_probs=94.4
Q ss_pred cchhhccCCCCCHHHHHHHHHHHH-HHH-hCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 122 NERIIRNFGMAKPEGYRKAVRLMH-IAE-KFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 122 ~~~~~~~gG~~~~~~~~K~~r~~~-~A~-~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
+++..+.+|-+++..+..+...+. +-. ...-||-.+++|+|.. ...++.....+...+.|+.+++.|.
T Consensus 25 ~~Riifl~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~----------v~~g~~i~d~i~~~~~~V~tv~~G~ 94 (193)
T d1tg6a1 25 RERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGV----------VTAGLAIYDTMQYILNPICTWCVGQ 94 (193)
T ss_dssp TTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBC----------HHHHHHHHHHHHHSCSCEEEEEEEE
T ss_pred ccCEEEECCEEchHHHHHHHHHHHHhcccCCCcEEEEEeecCccc----------HHHHHHHHHHHHhhcCceEEEEccc
Confidence 345567889999999998875554 333 3457999999999944 3344556667777889999999999
Q ss_pred Cchhhhhhhcccc--EEEEEcccEEEEeChhHHHHhhhccccc--------------------------hHHHHHHh---
Q psy14493 200 GGSGGALAIAVSD--ITLMLQYAIYSVISPEGCASILWKTSKR--------------------------ASDAAEAL--- 248 (318)
Q Consensus 200 ~~ggga~~~~~~D--~via~~~A~i~v~gP~~~a~il~~~~~~--------------------------~~~a~e~~--- 248 (318)
|++.|+..+..++ ..++.|+|++.+=-|.+.. +..... .++..+.+
T Consensus 95 aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~---~G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~~~~rD 171 (193)
T d1tg6a1 95 AASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGA---RGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERD 171 (193)
T ss_dssp EETHHHHHHHTSCTTCEEECTTCEEEECCCCCCC---CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSC
T ss_pred hHHHHHHHhhcCccCccccCcccHHHhcCCccCC---CcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccC
Confidence 9999998877666 6999999998885554211 111000 00111111
Q ss_pred -cccHHHHHHcCCcceeecCc
Q psy14493 249 -GLTADKLKSIGLINKIIKEP 268 (318)
Q Consensus 249 -~~~a~~a~~~G~vD~ii~~p 268 (318)
.++|.+|.+.|+||+|+..|
T Consensus 172 ~~lta~EAl~yGliD~Ii~~~ 192 (193)
T d1tg6a1 172 RYMSPMEAQEFGILDKVLVHP 192 (193)
T ss_dssp EEECHHHHHHHTSCSEECSSC
T ss_pred ccCCHHHHHHcCCCCEEccCC
Confidence 26999999999999999754
|
| >d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: PP-loop ATPase domain: TilS-like protein Aq 1887 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.22 E-value=1.3e-07 Score=81.58 Aligned_cols=53 Identities=34% Similarity=0.588 Sum_probs=45.1
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCc-cccccCCCCCCCCCChHHhhhhhc
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKI-QFYVFHINHGLSPSSDKWLIHCKN 317 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~-~~~~~~~~h~~~~~~~~w~~~~~~ 317 (318)
|.|+ +|+|||.||++||+.+..+...++. .+.++|+|||+|+.|+.|+.+|+.
T Consensus 25 ~kv~---Va~SGG~DS~~Ll~lL~~~~~~~~~~~i~~~~vdh~~r~~s~~~~~~~~~ 78 (216)
T d1wy5a1 25 RRVL---IAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKE 78 (216)
T ss_dssp CEEE---EECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHH
T ss_pred CeEE---EEeCCcHHHHHHHHHHHHHHHhcCCCcEEEEEeecccccchhhhhhHHHH
Confidence 5666 7999999999999998887666554 578899999999999999988864
|
| >d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: PP-loop ATPase domain: tRNA-Ile-lysidine synthetase, TilS, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.21 E-value=2.1e-07 Score=80.55 Aligned_cols=49 Identities=39% Similarity=0.784 Sum_probs=42.9
Q ss_pred cccCCCCchHHHHHHHHHHhhc-cCccccccCCCCCCCCCChHHhhhhhc
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCN-YKIQFYVFHINHGLSPSSDKWLIHCKN 317 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~-~~~~~~~~~~~h~~~~~~~~w~~~~~~ 317 (318)
+|+|||.||++|++.+.++... .+.++.++|+|||+|++|+.|+.+|+.
T Consensus 18 va~SGG~DS~~Ll~ll~~~~~~~~~~~l~~~~vdh~~r~~s~~~~~~~~~ 67 (227)
T d1ni5a1 18 VAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCEN 67 (227)
T ss_dssp EECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHH
T ss_pred EEecCcHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCcchhhhHHHHHH
Confidence 7999999999999999887654 456888999999999999999988764
|
| >d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.17 E-value=5.7e-06 Score=68.96 Aligned_cols=131 Identities=21% Similarity=0.157 Sum_probs=89.2
Q ss_pred chhhccCCCCCHHHHHHHHHHH-HHH-HhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLM-HIA-EKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~-~~A-~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
++..+.+|-++...+.++..-+ .+. +...-||-..++|||..+- .+......+...+.|+.+++.|.|
T Consensus 13 ~rii~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~----------~gl~i~d~i~~~~~~v~t~~~G~a 82 (179)
T d2cbya1 13 ERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSIS----------AGMAIYDTMVLAPCDIATYAMGMA 82 (179)
T ss_dssp TTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHH----------HHHHHHHHHHHCSSCEEEEEEEEE
T ss_pred CCEEEECCEECHHHHHHHHHHHHHHhccCCCCeEEEEeeCCCCCHH----------HHHHHHHHHHhhccceeeehhhhh
Confidence 4566788999999888887644 333 3346899999999995433 233445566677899999999999
Q ss_pred chhhhhhhcccc--EEEEEcccEEEEeChhHHHHhhhccccc----hHH----------------------HHHHh----
Q psy14493 201 GSGGALAIAVSD--ITLMLQYAIYSVISPEGCASILWKTSKR----ASD----------------------AAEAL---- 248 (318)
Q Consensus 201 ~ggga~~~~~~D--~via~~~A~i~v~gP~~~a~il~~~~~~----~~~----------------------a~e~~---- 248 (318)
++.|+..+..+| ..+|.|++++.+=.|.+.. +..... .++ ..+.+
T Consensus 83 aS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~---~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~~~d~ 159 (179)
T d2cbya1 83 ASMGEFLLAAGTKGKRYALPHARILMHQPLGGV---TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDR 159 (179)
T ss_dssp ETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTC
T ss_pred hhHHHHHHHcCCCCceEECCchHhhcCCCchhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCc
Confidence 999999887777 7999999988775554321 111100 000 01111
Q ss_pred cccHHHHHHcCCcceeec
Q psy14493 249 GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 ~~~a~~a~~~G~vD~ii~ 266 (318)
.++|.+|.+.|+||+|+.
T Consensus 160 ~l~a~EA~~~GliDeIi~ 177 (179)
T d2cbya1 160 WFTAAEALEYGFVDHIIT 177 (179)
T ss_dssp EEEHHHHHHHTSCSEECS
T ss_pred eecHHHHHHcCCCcEEec
Confidence 269999999999999996
|
| >d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.12 E-value=4.6e-06 Score=70.38 Aligned_cols=135 Identities=18% Similarity=0.240 Sum_probs=90.9
Q ss_pred cchhhccCCCCCHHHHHHHHHHHH-HH-HhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 122 NERIIRNFGMAKPEGYRKAVRLMH-IA-EKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 122 ~~~~~~~gG~~~~~~~~K~~r~~~-~A-~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
+++..+.+|-+++..+..+..-+. +- ....-||...++|+|... ..+......+...+.|+.+++.|.
T Consensus 23 ~~rii~l~g~I~~~~~~~~~~~l~~l~~~~~~~~I~l~InS~GG~v----------~~glai~d~i~~~~~~v~t~~~G~ 92 (192)
T d1y7oa1 23 KDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSV----------SAGLAIVDTMNFIKADVQTIVMGM 92 (192)
T ss_dssp HTTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCH----------HHHHHHHHHHHHSSSCEEEEEEEE
T ss_pred ccCEEEECCEEchHHHHHHHHHHHHhhhhcccCceeeeecCCCCCH----------HHHHHHHHHHHhcCcceEEEeccc
Confidence 345567889999988888876554 33 334579999999999543 334556667777889999999999
Q ss_pred Cchhhhhhhc--cccEEEEEcccEEEEeChhHHHHh--hhcc-ccchHH----------------------HHHHh----
Q psy14493 200 GGSGGALAIA--VSDITLMLQYAIYSVISPEGCASI--LWKT-SKRASD----------------------AAEAL---- 248 (318)
Q Consensus 200 ~~ggga~~~~--~~D~via~~~A~i~v~gP~~~a~i--l~~~-~~~~~~----------------------a~e~~---- 248 (318)
|++.|+..+. .++..+|.|++.+.+-.|.+...= -..+ .....+ ..+.+
T Consensus 93 aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~~~~rd~ 172 (192)
T d1y7oa1 93 AASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDN 172 (192)
T ss_dssp EETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHSCC
T ss_pred cCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCc
Confidence 9998888754 357999999998887555332110 0000 001111 01111
Q ss_pred cccHHHHHHcCCcceeec
Q psy14493 249 GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 ~~~a~~a~~~G~vD~ii~ 266 (318)
.++|.+|.+.|+||+|+.
T Consensus 173 ~lsa~EAleyGliD~Ii~ 190 (192)
T d1y7oa1 173 WMSAQETLEYGFIDEIMA 190 (192)
T ss_dssp CBCHHHHHHHTSCSEECC
T ss_pred eecHHHHHHcCCCcEEec
Confidence 269999999999999986
|
| >d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Plasmodium falciparum [TaxId: 5833]
Probab=98.11 E-value=1.2e-05 Score=67.60 Aligned_cols=134 Identities=15% Similarity=0.116 Sum_probs=90.4
Q ss_pred chhhccCCCCCHHHHHHHHHHHH-HHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCc
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMH-IAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGG 201 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~-~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ 201 (318)
++..+.+|-++...+..+..-+. +-.+..-||-..++|+|..+ ..+......+...+.|+.+++.|.|+
T Consensus 18 ~rii~l~g~Id~~~~~~~i~~l~~l~~~~~~~I~l~INS~GG~v----------~~g~ai~d~i~~~~~~v~tv~~G~aa 87 (190)
T d2f6ia1 18 KRIIYLTDEINKKTADELISQLLYLDNINHNDIKIYINSPGGSI----------NEGLAILDIFNYIKSDIQTISFGLVA 87 (190)
T ss_dssp TTEEEECSCBCHHHHHHHHHHHHHHHHHCCSCEEEEEEECCBCH----------HHHHHHHHHHHHSSSCEEEEEEEEEC
T ss_pred CcEEEECCeeCHHHHHHHHHHHHHHhccCCCCeEEEEeCchhhh----------hHHHHHHHHHHhhCCceEEEEecccc
Confidence 45567889999988877766554 44445579999999999433 34445556666778999999999999
Q ss_pred hhhhhhhcccc--EEEEEcccEEEEeChhHHHHhhhcccc-chH----------------------HHHHHh----cccH
Q psy14493 202 SGGALAIAVSD--ITLMLQYAIYSVISPEGCASILWKTSK-RAS----------------------DAAEAL----GLTA 252 (318)
Q Consensus 202 ggga~~~~~~D--~via~~~A~i~v~gP~~~a~il~~~~~-~~~----------------------~a~e~~----~~~a 252 (318)
+.|+..+..++ ..++.|++++.+-.|.+...=-..+.. ... +..+.+ .++|
T Consensus 88 S~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~~~d~~l~a 167 (190)
T d2f6ia1 88 SMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNA 167 (190)
T ss_dssp HHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECH
T ss_pred chhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccCCeeecH
Confidence 99988876665 689999998877555321100000000 000 111111 2699
Q ss_pred HHHHHcCCcceeec
Q psy14493 253 DKLKSIGLINKIIK 266 (318)
Q Consensus 253 ~~a~~~G~vD~ii~ 266 (318)
.+|.+.|+||+|++
T Consensus 168 ~EAl~~GliD~Ii~ 181 (190)
T d2f6ia1 168 LEAKQYGIIDEVIE 181 (190)
T ss_dssp HHHHHHTSCSEECC
T ss_pred HHHHHcCCCcEEcc
Confidence 99999999999996
|
| >d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Argininosuccinate synthetase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.00029 Score=56.28 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=28.9
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPS 307 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~ 307 (318)
+|+|||+||++||+.+.+ .+..+.++|+++|.+..
T Consensus 15 vA~SGGvDSsvll~lL~~----~g~~v~~~~~~~~~~~~ 49 (188)
T d1k92a1 15 IAFSGGLDTSAALLWMRQ----KGAVPYAYTANLGQPDE 49 (188)
T ss_dssp EECCSSHHHHHHHHHHHH----TTCEEEEEEEECCCTTC
T ss_pred EEeCCCHHHHHHHHHHHH----cCCcCeEEeeecCCCch
Confidence 699999999999987643 46678899999998843
|
| >d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: PAPS reductase-like domain: Sulfate adenylyltransferase subunit 2, CysD species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=95.05 E-value=0.0046 Score=49.80 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=32.9
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
|.++ +++|||-||.++|+.+............+++++|+..
T Consensus 27 d~i~---va~SGGKDS~vlL~L~~~~~~~~~~~~~~v~~d~~~~ 67 (211)
T d1zuna1 27 DNPV---MLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWK 67 (211)
T ss_dssp SSEE---EECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCC
T ss_pred CCEE---EEeCCcHHHHHHHHHHHhhcccccCCeeEEEecCccc
Confidence 5565 6999999999999988776665555667888999886
|
| >d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: GMP synthetase, central domain species: Escherichia coli [TaxId: 562]
Probab=90.57 E-value=0.043 Score=43.52 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=19.8
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhh
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFC 289 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~ 289 (318)
+.++ +|+|||.||.+++..+.+...
T Consensus 21 ~kvv---V~lSGGVDSsv~a~ll~~~~g 45 (197)
T d1gpma1 21 DKVI---LGLSGGVDSSVTAMLLHRAIG 45 (197)
T ss_dssp CEEE---EECCSSHHHHHHHHHHHHHHG
T ss_pred CcEE---EEcCCCHHHHHHHHHHHHhcC
Confidence 4565 799999999999887766443
|
| >d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: PAPS reductase-like domain: Phosphoadenylyl sulphate (PAPS) reductase species: Escherichia coli [TaxId: 562]
Probab=81.36 E-value=0.26 Score=40.44 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=30.7
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC-CC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS-PS 307 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~-~~ 307 (318)
+.++ +++|||.||.++||.+.++ ..++.++++++|.. |+
T Consensus 45 ~~v~---vs~SgGkDS~vllhl~~~~----~~~~~vvf~DTg~~fpe 84 (215)
T d1sura_ 45 GEYV---LSSSFGIQAAVSLHLVNQI----RPDIPVILTDTGYLFPE 84 (215)
T ss_dssp SEEE---EECCCCTTHHHHHHHHHHH----STTCEEEEEECSCBCHH
T ss_pred CCEE---EEecCChHHHHHHHHHHhc----CCCccEEEEECCcCcHH
Confidence 5565 5899999999999987765 33567899999986 44
|