Psyllid ID: psy14539

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MDSLFNAADLQNLSNLLNQGGNNNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRRVTADDPSEESGPSNGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTREFDCVNF
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccHHHHHHccccccccccccccEEEEEEccccccccEEEEEEccEEEEEcccEEEEcccccccccccccEEEEccccEEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccHHHccHHccccccccccccccccEEEEEEEEcccccEEEccccccccccccccEEEEEEccccccccEEEEEEEEEEEEccccEEEEcccccccccccccEEEccccEEEEEEEEEEEcccEEcc
Coil and Loop (DISEMBL)
MDSLFNAADLQNLSNLLnqggnnndsdseeemcstsgrkkvggasrhapenprfkvnirrvtaddpseesgpsngkgdsaktdeeddkwaiwnkdevpsmdtlpddanldpritpeydimyqqsvtSEDIYlqmggktpssvscEDMLVTIqlpgeqrenvdcdlttqhvdirSIKYrlalplphpvlphlcqatwdsdKSELKLTLRLTREFDCVNF
Flexible Loop (DISEMBL)
MDSLFNAADLQNLSNLLNQGGNNNDSDSEEEMCSTSgrkkvggasrhapenprfkvnirrvtaddpseesgpsngkgdsaktdeeddkWAIWnkdevpsmdtlpddaNLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQlpgeqrenvdcDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKSELKLTLrltrefdcvnf
Low Complexity Region (SEG)
MDSLFnaadlqnlsnllnqggnnndsDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRRVTADDPSEESGPSNGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLAlplphpvlphlCQATWDSDKSELKLTLRLTREFDCVNF
Disordered region (IsUnstruct)
****************************************************************************************WAIW********************ITPEYDIMYQQSVTSEDIYLQMGGK***SVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTREFDC***
Disordered Region (DISOPRED)
*****NA*DLQNLSNL**********************************************************************************************PRITPEYDIMYQQSVTSEDIYLQMGG*****VSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTREFDCVNF
Disordered Region (DISEMBL)
MDSLFNAADLQNLSNLLNQGG****************************ENPRFKVNIRRVT***********************DDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTREFDCVNF
Disordered Region (DISPRO)
****FNAA*LQNLSNLLNQ************************************************************************WNKDEVPSMD*LPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTREFDCVNF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSLFNAADLQNLSNLLNQGGNNNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRRVTADDPSEESGPSNGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTREFDCVNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q9NQM4	214	Protein PIH1D3 OS=Homo sa	yes	N/A	0.619	0.630	0.304	5e-13

>sp|Q9NQM4|PIHD3_HUMAN Protein PIH1D3 OS=Homo sapiens GN=PIH1D3 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 77/138 (55%), Gaps = 3/138 (2%)

Query: 81  KTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPS 140
           +T EE+++  IWN +E+P  +    D   D R  PEY+I+++Q V +EDI+L +  K  S
Sbjct: 79  ETSEENNE-DIWNSEEIP--EGAEYDDMWDVREIPEYEIIFRQQVGTEDIFLGLSKKDSS 135

Query: 141 SVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDK 200
           +  C +++  I+LP     ++  D+    +D+R+ + +L + LP  V     +A +  + 
Sbjct: 136 TGCCSELVAKIKLPNTNPSDIQIDIQETILDLRTPQKKLLITLPELVECTSAKAFYIPET 195

Query: 201 SELKLTLRLTREFDCVNF 218
             L++T+ + RE D  NF
Sbjct: 196 ETLEITMTMKRELDIANF 213

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
322792663	192	hypothetical protein SINV_06329 [Solenop	0.866	0.984	0.389	2e-31
291223491	190	PREDICTED: hypothetical protein [Saccogl	0.669	0.768	0.460	2e-30
332030531	195	Uncharacterized protein CXorf41 [Acromyr	0.894	1.0	0.380	9e-30
198431063	196	PREDICTED: similar to SJCHGC08782 protei	0.848	0.943	0.370	7e-28
350401468	191	PREDICTED: uncharacterized protein CXorf	0.871	0.994	0.378	8e-28
340729080	191	PREDICTED: uncharacterized protein CXorf	0.871	0.994	0.378	2e-27
307200231	192	Uncharacterized protein CXorf41 [Harpegn	0.880	1.0	0.376	1e-26
260806783	192	hypothetical protein BRAFLDRAFT_119143 [	0.577	0.656	0.476	2e-26
115670823	188	PREDICTED: uncharacterized protein CXorf	0.577	0.670	0.460	5e-26
390336379	188	PREDICTED: uncharacterized protein CXorf	0.577	0.670	0.460	5e-26

>gi|322792663|gb|EFZ16537.1| hypothetical protein SINV_06329 [Solenopsis invicta]

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/221 (38%), Positives = 124/221 (56%), Gaps = 32/221 (14%)

Query: 1   MDSLFNAADLQNLSNLLNQGGNNNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRR 60
           MD  F   DL+ L NL+      +DSD E+++   +G +K+G A   AP           
Sbjct: 1   MDGCFRPGDLEALQNLICP--PKDDSDIEDDL-PQAGARKLGPADIGAP----------- 46

Query: 61  VTADDPSEESGPS---NGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEY 117
            + +   E +GP     G GD            IW+  E   + +L D    DPR  PEY
Sbjct: 47  -SVESSQERAGPHASLQGAGDD-----------IWHPSETVDIRSLQD---YDPRKAPEY 91

Query: 118 DIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKY 177
           ++ ++Q+VT+ED+YL +G KTPS+ SCE + V ++LP E RE V+  + ++ +D+RS +Y
Sbjct: 92  EMKFKQAVTAEDVYLGIGFKTPSTASCEWLSVLVKLPEETREKVELSVESEAIDVRSPRY 151

Query: 178 RLALPLPHPVLPHLCQATWDSDKSELKLTLRLTREFDCVNF 218
           RL LP PHPV P+   A W +D S L++TLRLTRE D VNF
Sbjct: 152 RLHLPTPHPVDPNASSAKWHNDTSTLEVTLRLTRELDNVNF 192

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291223491|ref|XP_002731743.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/152 (46%), Positives = 98/152 (64%), Gaps = 6/152 (3%)

Query: 66  PSEESGPSNGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSV 125
           P ++  P+N     AK D +D    IW+ DEV       D    DPR  PEYDI+Y+Q++
Sbjct: 44  PVKQKAPTNKAHSDAKKDSKD----IWDVDEVEEGAEFEDLD--DPRPQPEYDIVYKQAI 97

Query: 126 TSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPH 185
           T+ED++LQMG K P++ SCEDM+V I LP  ++ +VD ++T + +DIRS K++L L LPH
Sbjct: 98  TTEDMFLQMGNKNPTTSSCEDMVVKINLPNTKKSDVDLNVTDKFLDIRSPKFKLGLHLPH 157

Query: 186 PVLPHLCQATWDSDKSELKLTLRLTREFDCVN 217
           PV      A WD+DK  L +TLR+ REFD +N
Sbjct: 158 PVDSKTGSAKWDADKELLIITLRMKREFDFIN 189

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|332030531|gb|EGI70219.1| Uncharacterized protein CXorf41 [Acromyrmex echinatior]

 Score =  135 bits (341), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 83/218 (38%), Positives = 122/218 (55%), Gaps = 23/218 (10%)

Query: 1   MDSLFNAADLQNLSNLLNQGGNNNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRR 60
           MD  F+ ADLQ L NL+     + D    E+    +G +K+G     AP +      + +
Sbjct: 1   MDGCFSPADLQALQNLI---CPSKDDSDSEDDLPQAGARKLGPGDIGAPSD------LSQ 51

Query: 61  VTADDPSEESGPSNGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIM 120
            ++ + S    P   KGD            IW+  E     +L D    DPR +PEY++ 
Sbjct: 52  DSSQNRSGPHAPLQSKGDD-----------IWHPSEAVDTQSLQD---YDPRESPEYEMK 97

Query: 121 YQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLA 180
           ++Q+VT+ED+YL MG KTPS+ SCE + V ++LP E RE V+  + ++ +D+RS +YRL 
Sbjct: 98  FKQAVTAEDVYLGMGFKTPSTASCEWLSVLVKLPQETREKVELSVESEAIDVRSPRYRLH 157

Query: 181 LPLPHPVLPHLCQATWDSDKSELKLTLRLTREFDCVNF 218
           LP PH V P+   A W SD S L++TL+LTRE D +NF
Sbjct: 158 LPTPHSVDPNASSAKWHSDTSTLEVTLKLTRELDNINF 195

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198431063|ref|XP_002127097.1| PREDICTED: similar to SJCHGC08782 protein [Ciona intestinalis]

 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/213 (37%), Positives = 116/213 (54%), Gaps = 28/213 (13%)

Query: 7   AADLQNLSNLLNQGGN-NNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRRVTADD 65
           A DL NLS++LN+    ++D D+ +    +     +G         P  K +++++    
Sbjct: 10  AQDLLNLSSMLNREKEASDDEDTPDSSTPSLTPASIG---------PNSKKSLKKIKTPY 60

Query: 66  PSEESGPSNGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSV 125
              ES P+                 IWN+DEV   +    +   DPR  P+YDI Y+Q V
Sbjct: 61  AKVESDPN----------------IIWNEDEVKESNIFAVEP--DPRPQPKYDISYKQKV 102

Query: 126 TSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPH 185
           TSED++L M GK PS+  CEDM+V I+LPG   ++V+ D+    +D RS K+RL L LPH
Sbjct: 103 TSEDMFLGMSGKNPSTACCEDMIVKIELPGCNMKDVELDVKQTTLDCRSPKFRLLLALPH 162

Query: 186 PVLPHLCQATWDSDKSELKLTLRLTREFDCVNF 218
           PV P    A WD +K  L++TL ++RE+D VNF
Sbjct: 163 PVDPKKGSAKWDGNKQILQVTLTMSREYDFVNF 195

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350401468|ref|XP_003486162.1| PREDICTED: uncharacterized protein CXorf41-like [Bombus impatiens]

 Score =  129 bits (324), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 118/219 (53%), Gaps = 29/219 (13%)

Query: 1   MDSLFNAADLQNLSNLLNQGGNNNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRR 60
           MD  F   +L+ L  L+N     NDSDSE+++     RK   G       N +F+     
Sbjct: 1   MDGCFGYHELKALQELINP--LKNDSDSEDDLPQAGARKL--GPGDIGTRNGKFQ----- 51

Query: 61  VTADDPSEESGPSNGKGDSAKTDEEDDKWAIWNKDE-VPSMDTLPDDANLDPRITPEYDI 119
                  + SGP      +    E DD   IW+  E V S  T       DPR  P+Y++
Sbjct: 52  -------DRSGPH-----APLKAEVDD---IWHPSEAVASQST----EAYDPRKVPDYEM 92

Query: 120 MYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRL 179
            ++Q+VT+ED++L MG KTP + SCE + V +++P E RE ++  + T+ +D+RS +YRL
Sbjct: 93  KFKQAVTAEDVFLGMGFKTPGTASCEWLSVLVKMPQEVREKIELSVETEAIDVRSPRYRL 152

Query: 180 ALPLPHPVLPHLCQATWDSDKSELKLTLRLTREFDCVNF 218
            L  PHPV P+   A W SD S L++TLRL RE D VNF
Sbjct: 153 HLETPHPVDPNASSAKWHSDISTLEVTLRLVRELDGVNF 191

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729080|ref|XP_003402836.1| PREDICTED: uncharacterized protein CXorf41-like [Bombus terrestris]

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 117/219 (53%), Gaps = 29/219 (13%)

Query: 1   MDSLFNAADLQNLSNLLNQGGNNNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRR 60
           MD  F   +L+ L  L+N     NDSDSE+++     RK   G       N +F+     
Sbjct: 1   MDGCFGYHELKALQELINP--LKNDSDSEDDLPQAGARK--FGPGDIGTRNEKFQ----- 51

Query: 61  VTADDPSEESGPSNGKGDSAKTDEEDDKWAIWNKDE-VPSMDTLPDDANLDPRITPEYDI 119
                  + SGP      +    E DD   IW+  E V S  T       DPR  PEY++
Sbjct: 52  -------DRSGPH-----APLKAEADD---IWHPSEAVASQST----EAYDPRKVPEYEM 92

Query: 120 MYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRL 179
            ++Q+VT+ED++L MG KTP + SCE + V +++P E  E ++  + T+ +D+RS +YRL
Sbjct: 93  KFKQAVTAEDVFLGMGFKTPGTASCEWLSVLVKMPQEVCEKIELSVETEAIDVRSPRYRL 152

Query: 180 ALPLPHPVLPHLCQATWDSDKSELKLTLRLTREFDCVNF 218
            L  PHPV P+   A W SD S L++TLRL RE D VNF
Sbjct: 153 HLETPHPVDPNASSAKWHSDISSLEVTLRLVRELDGVNF 191

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200231|gb|EFN80525.1| Uncharacterized protein CXorf41 [Harpegnathos saltator]

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/218 (37%), Positives = 114/218 (52%), Gaps = 26/218 (11%)

Query: 1   MDSLFNAADLQNLSNLLNQGGNNNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRR 60
           MD  F   DL+ L NL+       D    E+    +G + +G AS  AP     +V+   
Sbjct: 1   MDGCFGPRDLEALRNLICP---PEDDPDVEDDLPQAGARNLGPASIGAPSTEVSQVH--- 54

Query: 61  VTADDPSEESGPSNGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIM 120
                           G  A     DD   IW+  E  ++DT     + D R  PEY++ 
Sbjct: 55  ---------------PGPHAPLRGADDD--IWHPSE--AIDTQ-SSQDYDLRTVPEYEMK 94

Query: 121 YQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLA 180
           ++Q+VT+EDIYL MG KTP + SCE + V ++LP E RE V+  + ++ +D+RS +YRL 
Sbjct: 95  FKQAVTAEDIYLGMGFKTPGTASCEWLSVLVKLPRETREKVELSVESEAIDVRSSRYRLH 154

Query: 181 LPLPHPVLPHLCQATWDSDKSELKLTLRLTREFDCVNF 218
           LP PHPV P+   A W SD S L++ LRL RE D VNF
Sbjct: 155 LPTPHPVDPNASSAKWHSDTSTLEINLRLVRELDNVNF 192

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260806783|ref|XP_002598263.1| hypothetical protein BRAFLDRAFT_119143 [Branchiostoma floridae] gi|229283535|gb|EEN54275.1| hypothetical protein BRAFLDRAFT_119143 [Branchiostoma floridae]

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 87/128 (67%), Gaps = 2/128 (1%)

Query: 91  IWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVT 150
           IW+++EV +     D   LDPR  PEYD++++Q+VTSED++LQMG K  SS SCEDM+V 
Sbjct: 67  IWDEEEVATGAEYED--VLDPRPQPEYDVVFKQAVTSEDMFLQMGNKNLSSASCEDMVVK 124

Query: 151 IQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLT 210
           I+LPG +   V+ D+T + +D R+ KY+L L LPHPV     +A W  D+  L +TLR+ 
Sbjct: 125 IKLPGHKSSEVELDVTDKFLDCRTPKYKLGLHLPHPVDSKNGRAQWVQDQEMLVVTLRMV 184

Query: 211 REFDCVNF 218
           R+ D +NF
Sbjct: 185 RDLDFINF 192

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|115670823|ref|XP_001197112.1| PREDICTED: uncharacterized protein CXorf41-like isoform 1 [Strongylocentrotus purpuratus]

 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 87/128 (67%), Gaps = 2/128 (1%)

Query: 91  IWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVT 150
           IW+ + V       D    DPR  PEYDI+++Q+V+SED++LQMG KTP++ SCED++V 
Sbjct: 63  IWDAEAVTEGSEFED--IYDPRPEPEYDIIFKQAVSSEDMFLQMGRKTPATSSCEDLVVK 120

Query: 151 IQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLT 210
           I+LPG +  +V+ D+  + +D R+  ++L L LPHPV     +A WD DK  L +TL++T
Sbjct: 121 IKLPGVKYADVELDVKDKFLDCRTPNHKLGLHLPHPVDSKNGRAKWDGDKEILTVTLKMT 180

Query: 211 REFDCVNF 218
           RE+D VNF
Sbjct: 181 REYDFVNF 188

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|390336379|ref|XP_003724337.1| PREDICTED: uncharacterized protein CXorf41-like isoform 2 [Strongylocentrotus purpuratus]

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 87/128 (67%), Gaps = 2/128 (1%)

Query: 91  IWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVT 150
           IW+ + V       D    DPR  PEYDI+++Q+V+SED++LQMG KTP++ SCED++V 
Sbjct: 63  IWDAEAVTEGSEFED--IYDPRPEPEYDIIFKQAVSSEDMFLQMGRKTPATSSCEDLVVK 120

Query: 151 IQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLT 210
           I+LPG +  +V+ D+  + +D R+  ++L L LPHPV     +A WD DK  L +TL++T
Sbjct: 121 IKLPGVKYADVELDVKDKFLDCRTPNHKLGLHLPHPVDSKNGRAKWDGDKEILTVTLKMT 180

Query: 211 REFDCVNF 218
           RE+D VNF
Sbjct: 181 REYDFVNF 188

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NQM4	PIHD3_HUMAN	No assigned EC number	0.3043	0.6192	0.6308	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	218
cd06463	84	cd06463, p23_like, Proteins containing this p23_li	2e-05
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	0.001
pfam08190	315	pfam08190, PIH1, pre-RNA processing PIH1/Nop17	0.002

>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSD 199
           +++ +TI L    +++V  + T + + +        +Y L   L  P+ P   + T +  
Sbjct: 6   DEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDR 65

Query: 200 KSELKLT 206
           K E+ L 
Sbjct: 66  KIEITLK 72

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). hB-ind1 plays a role in the signaling pathway mediated by the small GTPase Rac1, NUDC is needed for nuclear movement, Melusin interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 14/76 (18%)

Query: 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIR------------SIKYRLALPLPHPVLPHLC 192
           ++++VT+ LPG ++E++  ++    + I               ++  +  LP  V P   
Sbjct: 6   DEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKS 65

Query: 193 QATWDSDKSELKLTLR 208
           +A+ ++    L++TL 
Sbjct: 66  KASLENGV--LEITLP 79

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

>gnl|CDD|219739 pfam08190, PIH1, pre-RNA processing PIH1/Nop17

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 9/144 (6%)

Query: 69  ESGPSNGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRIT-PEYDIMYQQSVTS 127
            S P              +  +  ++   P +  +   A   P  T PEY + Y+  V  
Sbjct: 174 ASPPQQTGDQKTSGQLIQEIDSEPDEAARPLISEIESSAIQTPEPTKPEYSVRYRGYV-- 231

Query: 128 EDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDL----TTQHVDIRSIKYRLALPL 183
            D+ L     + SS   +++++ I+LPG +    +CDL        ++ R  KYRL LPL
Sbjct: 232 -DLQLFRDPDSKSSGRPKELVLEIELPGLKSVA-ECDLDVGEDRLLLESRKPKYRLDLPL 289

Query: 184 PHPVLPHLCQATWDSDKSELKLTL 207
           P+PV      A ++  K  L +TL
Sbjct: 290 PYPVDEERGSAKFNKKKKTLTVTL 313

This domain is involved in pre-rRNA processing. It has has been shown to be required either for nucleolar retention or correct assembly of the box C/D snoRNP in Saccharomyces cerevisiae. The C-terminal region of this family has similarity to the CS domain pfam04969. Length = 315

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	99.86
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	99.17
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	99.16
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	99.12
COG0071	146	IbpA Molecular chaperone (small heat shock protein	99.12
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	99.1
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	99.1
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	99.09
PRK11597	142	heat shock chaperone IbpB; Provisional	99.09
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.09
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	99.06
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	99.06
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	99.05
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	99.03
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	99.01
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	99.0
PRK10743	137	heat shock protein IbpA; Provisional	99.0
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	98.92
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	98.91
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	98.9
cd00298	80	ACD_sHsps_p23-like This domain family includes the	98.89
cd06463	84	p23_like Proteins containing this p23_like domain	98.7
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	98.36
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	98.33
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	97.96
PF05455	177	GvpH: GvpH; InterPro: IPR008633 This family consis	97.93
KOG4356|consensus	310		97.73
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	97.58
KOG0710|consensus	196		97.56
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	97.54
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	97.34
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	97.24
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	96.97
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	96.46
cd06488	87	p23_melusin_like p23_like domain similar to the C-	96.4
KOG3591|consensus	173		95.94
KOG3247|consensus	466		95.66
KOG1309|consensus	196		95.62
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	95.53
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	94.38
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	94.38
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	93.8
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	93.58

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=99.86  E-value=4.8e-21  Score=171.08  Aligned_cols=99  Identities=36%  Similarity=0.557  Sum_probs=91.9

Q ss_pred             CCCCCCCeEEEEEeeeccchhhhhhcCCCCCCCCCCCcEEEEEEcCCCC-CCcceEEEeCCEEEEEecc--eEEEcCCCC
Q psy14539        109 LDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQ-RENVDCDLTTQHVDIRSIK--YRLALPLPH  185 (218)
Q Consensus       109 ~d~r~~PeY~i~ykq~V~~eD~~lg~~~k~Pss~~~e~LvV~I~LPg~~-~~didLdV~e~~L~L~s~~--Y~L~L~LP~  185 (218)
                      ...+..|+|+|+|++.|+++|++.+++. + +++.|+.|+|+|+||++. .++|+|+|+++.|.|.++.  |+|+|+|||
T Consensus       227 ~~~~~~P~y~i~~~~~v~~~~~~~~~~~-~-~~~~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~~y~L~l~LP~  304 (328)
T PF08190_consen  227 SPDPPKPEYSIVYRQQVDLEDVRDSSDS-D-SSGSPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKPKYRLDLPLPY  304 (328)
T ss_pred             cccccCCcceEEeeccceeeeeeccccC-C-cCCCCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCCceEEEccCCC
Confidence            3458899999999999999999988444 4 678999999999999996 9999999999999999876  999999999


Q ss_pred             CccCCCeeeEEECCCCEEEEEEec
Q psy14539        186 PVLPHLCQATWDSDKSELKLTLRL  209 (218)
Q Consensus       186 pVd~~~~kAkfd~~~g~L~VTLpv  209 (218)
                      +|+.+.|+|+|++++++|+|||||
T Consensus       305 ~V~~~~~~Akf~~~~~~L~vtlpV  328 (328)
T PF08190_consen  305 PVDEDNGKAKFDKKTKTLTVTLPV  328 (328)
T ss_pred             cccCCCceEEEccCCCEEEEEEEC
Confidence            999999999999999999999997

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=99.17  E-value=8.6e-11  Score=88.44  Aligned_cols=65  Identities=17%  Similarity=0.281  Sum_probs=58.7

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCC-EEEEEec--------------------ceEEEcCCCCCccCCCeeeEEECCCC
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQ-HVDIRSI--------------------KYRLALPLPHPVLPHLCQATWDSDKS  201 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~-~L~L~s~--------------------~Y~L~L~LP~pVd~~~~kAkfd~~~g  201 (218)
                      ..+.++|.++|||++.++|+|.|.++ .|.|++.                    .|.+.+.||..|+.++++|+|.+  |
T Consensus         7 ~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~~n--G   84 (92)
T cd06472           7 TPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFLEN--G   84 (92)
T ss_pred             cCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEEEC--C
Confidence            34789999999999999999999975 8988762                    47889999999999999999999  9


Q ss_pred             EEEEEEec
Q psy14539        202 ELKLTLRL  209 (218)
Q Consensus       202 ~L~VTLpv  209 (218)
                      +|+|+||+
T Consensus        85 vL~I~lPK   92 (92)
T cd06472          85 VLTVTVPK   92 (92)
T ss_pred             EEEEEecC
Confidence            99999995

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=99.16  E-value=8.2e-11  Score=88.28  Aligned_cols=65  Identities=11%  Similarity=0.174  Sum_probs=60.2

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEecc-------------eEEEcCCCCCccCCCeeeEEE-CCCCEEEEEEec
Q psy14539        144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIK-------------YRLALPLPHPVLPHLCQATWD-SDKSELKLTLRL  209 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~~-------------Y~L~L~LP~pVd~~~~kAkfd-~~~g~L~VTLpv  209 (218)
                      .+.++|+++|||+++++|+|.|.++.|.|++.+             |.+.+.||..||.++++|+|. +  |+|+|+||.
T Consensus         6 ~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~d--GvL~I~lPk   83 (84)
T cd06498           6 KDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPD--GVLTVCGPR   83 (84)
T ss_pred             CceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCC--CEEEEEEeC
Confidence            478999999999999999999999999998742             889999999999999999995 8  999999997


Q ss_pred             c
Q psy14539        210 T  210 (218)
Q Consensus       210 ~  210 (218)
                      +
T Consensus        84 ~   84 (84)
T cd06498          84 K   84 (84)
T ss_pred             C
Confidence            4

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=99.12  E-value=1.8e-10  Score=86.73  Aligned_cols=65  Identities=11%  Similarity=0.146  Sum_probs=59.9

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEecc-------------eEEEcCCCCCccCCCeeeEE-ECCCCEEEEEEe
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIK-------------YRLALPLPHPVLPHLCQATW-DSDKSELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~~-------------Y~L~L~LP~pVd~~~~kAkf-d~~~g~L~VTLp  208 (218)
                      ..+.+.|.++|||+++++|++.|.++.|.|++.+             |++.+.||..|+.++.+|+| .+  |+|+|++|
T Consensus         8 ~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~d--GvL~I~~P   85 (86)
T cd06497           8 DRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSAD--GMLTFSGP   85 (86)
T ss_pred             cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCC--CEEEEEec
Confidence            4579999999999999999999999999998642             88999999999999999999 68  99999999


Q ss_pred             c
Q psy14539        209 L  209 (218)
Q Consensus       209 v  209 (218)
                      +
T Consensus        86 K   86 (86)
T cd06497          86 K   86 (86)
T ss_pred             C
Confidence            5

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=2.3e-10  Score=93.15  Aligned_cols=65  Identities=23%  Similarity=0.474  Sum_probs=60.4

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEec--------------------ceEEEcCCCCCccCCCeeeEEECCCCEEE
Q psy14539        145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI--------------------KYRLALPLPHPVLPHLCQATWDSDKSELK  204 (218)
Q Consensus       145 e~LvV~I~LPg~~~~didLdV~e~~L~L~s~--------------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~  204 (218)
                      +.++|.++|||++.++|+|.+.++.|.|++.                    .|++.+.||..|+++.++|+|.+  |+|+
T Consensus        50 ~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~~n--GvL~  127 (146)
T COG0071          50 DEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKYKN--GLLT  127 (146)
T ss_pred             CEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEeeC--cEEE
Confidence            5999999999999999999999999999763                    37799999999999999999999  9999


Q ss_pred             EEEeccc
Q psy14539        205 LTLRLTR  211 (218)
Q Consensus       205 VTLpv~r  211 (218)
                      |+||+..
T Consensus       128 I~lpk~~  134 (146)
T COG0071         128 VTLPKAE  134 (146)
T ss_pred             EEEeccc
Confidence            9999864

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.10  E-value=2.9e-10  Score=84.17  Aligned_cols=66  Identities=17%  Similarity=0.270  Sum_probs=60.8

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEec
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRL  209 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv  209 (218)
                      .++.++|.++|||+++++|+|.|.++.|.|++.             .|++.+.||..|+.++.+|+|.+ .|+|+|++|+
T Consensus         5 ~~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~-~GvL~I~~Pk   83 (83)
T cd06526           5 DDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSS-DGVLTIEAPK   83 (83)
T ss_pred             cCeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCC-CcEEEEEecC
Confidence            447999999999999999999999999999763             58899999999999999999987 5999999995

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=99.10  E-value=2.2e-10  Score=86.22  Aligned_cols=65  Identities=14%  Similarity=0.173  Sum_probs=60.2

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEE-CCCCEEEEEEe
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWD-SDKSELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkfd-~~~g~L~VTLp  208 (218)
                      ..+.+.|+++|||+++++|+|+|.++.|.|++.             .|++.+.||..|+.++.+|+|. +  |+|+|+||
T Consensus         8 ~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~d--GvL~I~lP   85 (86)
T cd06475           8 TADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPD--GILTVEAP   85 (86)
T ss_pred             cCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCC--CeEEEEec
Confidence            457899999999999999999999999999863             2889999999999999999997 8  99999999


Q ss_pred             c
Q psy14539        209 L  209 (218)
Q Consensus       209 v  209 (218)
                      +
T Consensus        86 ~   86 (86)
T cd06475          86 I   86 (86)
T ss_pred             C
Confidence            6

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=99.09  E-value=2.6e-10  Score=85.17  Aligned_cols=65  Identities=14%  Similarity=0.189  Sum_probs=59.4

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEE-ECCCCEEEEEEe
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATW-DSDKSELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkf-d~~~g~L~VTLp  208 (218)
                      ..+.++|+++|||++.++|+|.|.++.|.|++.             .|.+.+.||..||.++.+|+| .+  |+|+|++|
T Consensus         5 ~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~d--GvL~I~~P   82 (83)
T cd06478           5 DKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSAD--GVLTISGP   82 (83)
T ss_pred             cCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCC--CEEEEEec
Confidence            347899999999999999999999999999763             288999999999999999999 58  99999999


Q ss_pred             c
Q psy14539        209 L  209 (218)
Q Consensus       209 v  209 (218)
                      +
T Consensus        83 K   83 (83)
T cd06478          83 R   83 (83)
T ss_pred             C
Confidence            5

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=99.09  E-value=3.7e-10  Score=92.82  Aligned_cols=62  Identities=19%  Similarity=0.337  Sum_probs=57.2

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEec------------------ceEEEcCCCCCccCCCeeeEEECCCCEEEEE
Q psy14539        145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------------------KYRLALPLPHPVLPHLCQATWDSDKSELKLT  206 (218)
Q Consensus       145 e~LvV~I~LPg~~~~didLdV~e~~L~L~s~------------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VT  206 (218)
                      +.++|+++|||++.++|+|+|.++.|+|++.                  .|.+.+.||..|+.+  +|+|++  |+|+||
T Consensus        43 ~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~n--GVL~I~  118 (142)
T PRK11597         43 NHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVN--GLLHID  118 (142)
T ss_pred             CEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcC--CEEEEE
Confidence            5799999999999999999999999999863                  378999999999998  699999  999999


Q ss_pred             Eecc
Q psy14539        207 LRLT  210 (218)
Q Consensus       207 Lpv~  210 (218)
                      ||+.
T Consensus       119 lPK~  122 (142)
T PRK11597        119 LIRN  122 (142)
T ss_pred             Eecc
Confidence            9975

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.09  E-value=8.1e-10  Score=79.71  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=63.7

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEecceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE  212 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re  212 (218)
                      ..+.+.|+|.+||++.+++++.++...|.++..+|.+.+.||++|++++++|++.+  |.|+|+|++..+
T Consensus         4 t~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~~~~~~~~~l~~~I~~e~~~~~~~~--~~l~i~L~K~~~   71 (78)
T cd06469           4 TDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFPPYLFELDLAAPIDDEKSSAKIGN--GVLVFTLVKKEP   71 (78)
T ss_pred             cCCEEEEEEEeCCCccccceEEEecCEEEEcCCCEEEEEeCcccccccccEEEEeC--CEEEEEEEeCCC
Confidence            45789999999999999999999999999999999999999999999999999988  999999998754

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=99.06  E-value=5.9e-10  Score=83.61  Aligned_cols=65  Identities=12%  Similarity=0.153  Sum_probs=59.5

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEE-CCCCEEEEEEe
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWD-SDKSELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkfd-~~~g~L~VTLp  208 (218)
                      ..+.+.|.++|||++.++|++.|.++.|.|++.             .|++.+.||..|+.++.+|+|. +  |+|+|++|
T Consensus         5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~d--GvL~I~~P   82 (83)
T cd06476           5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHD--GILCIQAP   82 (83)
T ss_pred             cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCC--CEEEEEec
Confidence            347899999999999999999999999999763             2789999999999999999996 8  99999999


Q ss_pred             c
Q psy14539        209 L  209 (218)
Q Consensus       209 v  209 (218)
                      +
T Consensus        83 r   83 (83)
T cd06476          83 R   83 (83)
T ss_pred             C
Confidence            5

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.06  E-value=5.6e-10  Score=80.82  Aligned_cols=65  Identities=22%  Similarity=0.382  Sum_probs=60.1

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-------------------cceEEEcCCCCCccCCCeeeEEECCCCEE
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-------------------IKYRLALPLPHPVLPHLCQATWDSDKSEL  203 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s-------------------~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L  203 (218)
                      ..+.++|.|+|||+..++|++.+.++.|.|++                   ..|++.+.||..|+.+.++|.|.+  |+|
T Consensus         5 ~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~--G~L   82 (88)
T cd06464           5 TDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN--GVL   82 (88)
T ss_pred             cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC--CEE
Confidence            34799999999999999999999999999983                   358999999999999999999999  999


Q ss_pred             EEEEec
Q psy14539        204 KLTLRL  209 (218)
Q Consensus       204 ~VTLpv  209 (218)
                      +|++|+
T Consensus        83 ~I~~pk   88 (88)
T cd06464          83 TITLPK   88 (88)
T ss_pred             EEEEcC
Confidence            999984

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=99.05  E-value=5.3e-10  Score=83.92  Aligned_cols=64  Identities=23%  Similarity=0.391  Sum_probs=57.0

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec----------------------ceEEEcCCCCCccCCCeeeEEECCC
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI----------------------KYRLALPLPHPVLPHLCQATWDSDK  200 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~----------------------~Y~L~L~LP~pVd~~~~kAkfd~~~  200 (218)
                      ..+.++|.++|||++.++|+|.+.++.|.|++.                      .|.+.+.|| .|+.+.++|+|++  
T Consensus         8 ~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~~~d--   84 (93)
T cd06471           8 TDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAKYEN--   84 (93)
T ss_pred             cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEEEEC--
Confidence            347999999999999999999999999999541                      367789999 7999999999988  


Q ss_pred             CEEEEEEec
Q psy14539        201 SELKLTLRL  209 (218)
Q Consensus       201 g~L~VTLpv  209 (218)
                      |+|+|+||+
T Consensus        85 GvL~I~lPK   93 (93)
T cd06471          85 GVLKITLPK   93 (93)
T ss_pred             CEEEEEEcC
Confidence            999999995

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=99.03  E-value=8.5e-10  Score=82.61  Aligned_cols=64  Identities=11%  Similarity=0.251  Sum_probs=59.7

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec----------ceEEEcCCCCCccCCCeeeEE-ECCCCEEEEEEe
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI----------KYRLALPLPHPVLPHLCQATW-DSDKSELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~----------~Y~L~L~LP~pVd~~~~kAkf-d~~~g~L~VTLp  208 (218)
                      ..+.++|.++|||+++++|++.|.++.|.|++.          .|.+.+.||..||+++++|+| .+  |+|+|+++
T Consensus         6 ~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~--GvL~I~~~   80 (81)
T cd06479           6 LGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGED--GTLTIKAR   80 (81)
T ss_pred             cCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCC--CEEEEEec
Confidence            558999999999999999999999999999874          588999999999999999997 88  99999997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=99.01  E-value=9.9e-10  Score=82.84  Aligned_cols=65  Identities=14%  Similarity=0.229  Sum_probs=59.2

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----------------ceEEEcCCCCCccCCCeeeEE-ECCCCEEE
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----------------KYRLALPLPHPVLPHLCQATW-DSDKSELK  204 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-----------------~Y~L~L~LP~pVd~~~~kAkf-d~~~g~L~  204 (218)
                      ..+.++|+++|||+++++|+|.|.++.|.|++.                 .|++.+.||..|+.+.++|.| .+  |+|+
T Consensus         5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~d--GvL~   82 (87)
T cd06481           5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPS--GHLH   82 (87)
T ss_pred             ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCC--ceEE
Confidence            447899999999999999999999999999763                 277899999999999999999 78  9999


Q ss_pred             EEEec
Q psy14539        205 LTLRL  209 (218)
Q Consensus       205 VTLpv  209 (218)
                      |++|.
T Consensus        83 I~~P~   87 (87)
T cd06481          83 IRAPR   87 (87)
T ss_pred             EEcCC
Confidence            99983

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=99.00  E-value=1.3e-09  Score=82.09  Aligned_cols=60  Identities=12%  Similarity=0.302  Sum_probs=55.6

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEe-------------------cceEEEcCCCCCccCCCeeeEEECCCCEEEE
Q psy14539        145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRS-------------------IKYRLALPLPHPVLPHLCQATWDSDKSELKL  205 (218)
Q Consensus       145 e~LvV~I~LPg~~~~didLdV~e~~L~L~s-------------------~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~V  205 (218)
                      +.++|+++|||++.++|+|.+.++.|.|++                   ..|.+.+.||..|+..  +|+|.+  |+|+|
T Consensus        11 ~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~~--GvL~I   86 (90)
T cd06470          11 NNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELEN--GLLTI   86 (90)
T ss_pred             CeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEeC--CEEEE
Confidence            689999999999999999999999999984                   3588999999999975  899999  99999


Q ss_pred             EEe
Q psy14539        206 TLR  208 (218)
Q Consensus       206 TLp  208 (218)
                      +|+
T Consensus        87 ~l~   89 (90)
T cd06470          87 DLE   89 (90)
T ss_pred             EEE
Confidence            997

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>PRK10743 heat shock protein IbpA; Provisional

Probab=99.00  E-value=1.2e-09  Score=89.19  Aligned_cols=63  Identities=10%  Similarity=0.149  Sum_probs=57.6

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec------------------ceEEEcCCCCCccCCCeeeEEECCCCEEEE
Q psy14539        144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------------------KYRLALPLPHPVLPHLCQATWDSDKSELKL  205 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~------------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~V  205 (218)
                      .+.++|+++|||+++++|+|.|.++.|+|++.                  .|.+.+.||..|+.+  +|+|.+  |+|+|
T Consensus        44 ~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A~~~d--GVL~I  119 (137)
T PRK10743         44 ENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR--GANLVN--GLLYI  119 (137)
T ss_pred             CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC--cCEEeC--CEEEE
Confidence            47899999999999999999999999999863                  377899999999998  499999  99999


Q ss_pred             EEecc
Q psy14539        206 TLRLT  210 (218)
Q Consensus       206 TLpv~  210 (218)
                      +||+.
T Consensus       120 ~lPK~  124 (137)
T PRK10743        120 DLERV  124 (137)
T ss_pred             EEeCC
Confidence            99985

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=98.92  E-value=3.6e-09  Score=80.29  Aligned_cols=63  Identities=14%  Similarity=0.210  Sum_probs=57.3

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEec----------------ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEe
Q psy14539        145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI----------------KYRLALPLPHPVLPHLCQATWDSDKSELKLTLR  208 (218)
Q Consensus       145 e~LvV~I~LPg~~~~didLdV~e~~L~L~s~----------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLp  208 (218)
                      +.++|+++|||+++++|+|.|.++.|.|++.                .|++.+.||..|+.+.++|+|.+ .|+|+|.-|
T Consensus         8 ~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~-~~~l~i~~~   86 (87)
T cd06482           8 SNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGL-GSVVKIETP   86 (87)
T ss_pred             CEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcC-CCEEEEeeC
Confidence            7999999999999999999999999999873                25689999999999999999999 349999766

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=98.91  E-value=5.6e-09  Score=78.89  Aligned_cols=69  Identities=19%  Similarity=0.419  Sum_probs=57.1

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec------------------ceEEEcCCCCCccCCCeeeEEECCCCEEE
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------------------KYRLALPLPHPVLPHLCQATWDSDKSELK  204 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~------------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~  204 (218)
                      ..+.+.|.++|||+..++|.|.+.++.|.|++.                  .|...+.||..|+.++++|+|.+  |+|+
T Consensus         5 ~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~--GvL~   82 (102)
T PF00011_consen    5 DEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYEN--GVLT   82 (102)
T ss_dssp             SSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETT--SEEE
T ss_pred             CCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecC--CEEE
Confidence            347899999999999999999999999999763                  37789999999999999999966  9999


Q ss_pred             EEEeccccc
Q psy14539        205 LTLRLTREF  213 (218)
Q Consensus       205 VTLpv~re~  213 (218)
                      |++|+.+..
T Consensus        83 I~~pk~~~~   91 (102)
T PF00011_consen   83 ITIPKKEEE   91 (102)
T ss_dssp             EEEEBSSSC
T ss_pred             EEEEccccc
Confidence            999998653

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=98.90  E-value=5.5e-09  Score=78.61  Aligned_cols=64  Identities=11%  Similarity=0.073  Sum_probs=58.1

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEE-ECCCCEEEEEEe
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATW-DSDKSELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkf-d~~~g~L~VTLp  208 (218)
                      ..+.++|+++|||+++++|+|.|.++.|.|++.             .|.+.+.||..|+.+.++|+| ++  |+|+|+-+
T Consensus         5 ~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~d--GvL~I~~~   82 (83)
T cd06477           5 GKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHD--GILVVETK   82 (83)
T ss_pred             CCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCC--CEEEEEec
Confidence            347899999999999999999999999999873             377999999999999999998 67  99999865

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=98.89  E-value=6.7e-09  Score=71.92  Aligned_cols=64  Identities=23%  Similarity=0.481  Sum_probs=59.6

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe------------cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEec
Q psy14539        144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS------------IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRL  209 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s------------~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv  209 (218)
                      .+.+.|+|.||+...+++.+.+.++.|.|+.            ..|++.+.||++|+++.++|+|..  |.|+|+||+
T Consensus         5 ~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~--~~l~i~l~K   80 (80)
T cd00298           5 DDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLEN--GVLEITLPK   80 (80)
T ss_pred             CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEEC--CEEEEEEcC
Confidence            4789999999999999999999999999983            479999999999999999999999  999999984

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=98.70  E-value=1.3e-07  Score=67.32  Aligned_cols=68  Identities=19%  Similarity=0.342  Sum_probs=62.1

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE  212 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s-----~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re  212 (218)
                      ..+.+.|.|.+|+...++++++++++.|.|+.     ..|.+.+.|+++|+++.+++++..  +.|+|+|+++.+
T Consensus         4 ~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~--~~l~i~L~K~~~   76 (84)
T cd06463           4 TLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVED--RKIEITLKKKEP   76 (84)
T ss_pred             cccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeC--CEEEEEEEECCC
Confidence            34789999999999999999999999999985     579999999999999999999987  999999998765

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=98.36  E-value=2.3e-06  Score=65.65  Aligned_cols=71  Identities=17%  Similarity=0.237  Sum_probs=63.7

Q ss_pred             CCCCCCCCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEECCCCEE
Q psy14539        137 KTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWDSDKSEL  203 (218)
Q Consensus       137 k~Pss~~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L  203 (218)
                      +.|.+..-+.+.|.+++-|.+.+||++.|.++.|.|++.             .|.+.+.||..||.+.++|.+.. .|+|
T Consensus         7 ~~~~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~-dGvL   85 (91)
T cd06480           7 RNPPPNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSP-EGLL   85 (91)
T ss_pred             cCCCCCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCC-CCeE
Confidence            456667889999999999999999999999999999763             37899999999999999999993 3999


Q ss_pred             EEEEe
Q psy14539        204 KLTLR  208 (218)
Q Consensus       204 ~VTLp  208 (218)
                      +|++|
T Consensus        86 ~IeaP   90 (91)
T cd06480          86 IIEAP   90 (91)
T ss_pred             EEEcC
Confidence            99988

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=98.33  E-value=4e-06  Score=60.86  Aligned_cols=68  Identities=21%  Similarity=0.341  Sum_probs=60.0

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE  212 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s-----~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re  212 (218)
                      ..+.+.|.|.+|++..+++.+.++++.|.|+.     ..|.+.+.|.++|+++.+++++..  +.|+|+|.+...
T Consensus         5 t~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~--~~vei~L~K~~~   77 (84)
T cd06466           5 TDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLP--TKVEITLKKAEP   77 (84)
T ss_pred             cCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeC--eEEEEEEEcCCC
Confidence            44789999999999999999999999999964     269999999999999988877777  889999998753

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=97.96  E-value=8.6e-05  Score=52.39  Aligned_cols=65  Identities=20%  Similarity=0.281  Sum_probs=54.9

Q ss_pred             CCCcEEEEEEcCCCC--CCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEec
Q psy14539        143 SCEDMLVTIQLPGEQ--RENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRL  209 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~--~~didLdV~e~~L~L~s~-----~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv  209 (218)
                      ..+.+.|.|.+++..  .+++.++++++.|.++..     .|.+.+.|.++|+++.++.+...  +.|.|+|.+
T Consensus         8 t~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~--~~i~i~L~K   79 (79)
T PF04969_consen    8 TDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKD--NKIEITLKK   79 (79)
T ss_dssp             ESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEET--TEEEEEEEB
T ss_pred             CCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEEC--CEEEEEEEC
Confidence            347899999996654  999999999999999853     79999999999999999888888  799999864

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []

Probab=97.93  E-value=5.3e-05  Score=64.71  Aligned_cols=64  Identities=31%  Similarity=0.577  Sum_probs=52.8

Q ss_pred             cEEEEEEcCCCCCCc-ceEEEe--CCEEEEEe-cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539        146 DMLVTIQLPGEQREN-VDCDLT--TQHVDIRS-IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE  212 (218)
Q Consensus       146 ~LvV~I~LPg~~~~d-idLdV~--e~~L~L~s-~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re  212 (218)
                      +++|.++|||+...+ |++.|.  ...|.++. .+|.-++.||.+ ..+..+|.|+|  |+|+|.|....+
T Consensus       103 e~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~~~~krv~L~~~-~~e~~~~t~nN--gILEIri~~~~~  170 (177)
T PF05455_consen  103 ELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGEKYLKRVALPWP-DPEITSATFNN--GILEIRIRRTEE  170 (177)
T ss_pred             cEEEEEeCCCCCcccceeeEeecCCceEEEecCCceEeeEecCCC-ccceeeEEEeC--ceEEEEEeecCC
Confidence            799999999998666 777776  66666664 478899999999 57888999999  999999986644

>KOG4356|consensus

Probab=97.73  E-value=6e-06  Score=75.84  Aligned_cols=70  Identities=20%  Similarity=0.333  Sum_probs=65.9

Q ss_pred             CCCCcEEEEEEcCCCC-CCcceEEEeCCEEEEEec-c-eEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539        142 VSCEDMLVTIQLPGEQ-RENVDCDLTTQHVDIRSI-K-YRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR  211 (218)
Q Consensus       142 ~~~e~LvV~I~LPg~~-~~didLdV~e~~L~L~s~-~-Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r  211 (218)
                      ..+..+.++|+||+.+ +..+.|.|+++++.+.+. + |+|.+++|+-++.+++.|.|+..+..|.||||+.|
T Consensus       237 e~p~~i~~e~~lp~~n~~~~~sl~v~e~ri~i~~~~~~y~l~~~~~~~~~~~~~~a~Fd~~~~al~i~~P~~~  309 (310)
T KOG4356|consen  237 EAPDEIEAEIDLPNYNSMQEFSLLVGEDRIVIETRKQGYRLNLNIPYIIDQDRAPALFDKTTKALHITIPVVR  309 (310)
T ss_pred             cCcchhhhhhhcccchhhhccccccCCcceEeccCccceeeccccccccCcccchhhHHHHHHhhheeccccC
Confidence            4678999999999999 999999999999999875 4 99999999999999999999999999999999986

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=97.58  E-value=0.00046  Score=53.17  Aligned_cols=65  Identities=17%  Similarity=0.335  Sum_probs=57.3

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec------ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR  211 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r  211 (218)
                      ..+.+.|+|.+|++  +++.++++++.|.|...      .|++.+.|.++|+++.++.++..  +.++|+|.+..
T Consensus         8 t~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~--~kveI~L~K~~   78 (108)
T cd06465           8 RSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTG--RQIEFVLRKKE   78 (108)
T ss_pred             CCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecC--CeEEEEEEECC
Confidence            44789999999998  88999999999999752      39999999999999988888776  88999999875

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>KOG0710|consensus

Probab=97.56  E-value=0.00012  Score=62.96  Aligned_cols=69  Identities=17%  Similarity=0.288  Sum_probs=61.7

Q ss_pred             CCCCcEEEEEEcCCCCCCcceEEEeCC-EEEEEec----------------------ceEEEcCCCCCccCCCeeeEEEC
Q psy14539        142 VSCEDMLVTIQLPGEQRENVDCDLTTQ-HVDIRSI----------------------KYRLALPLPHPVLPHLCQATWDS  198 (218)
Q Consensus       142 ~~~e~LvV~I~LPg~~~~didLdV~e~-~L~L~s~----------------------~Y~L~L~LP~pVd~~~~kAkfd~  198 (218)
                      ..++.+++.++|||+...++.+++.+. .|.+++.                      .|...+.||..|+.+..+|.|.+
T Consensus        91 e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~~~n  170 (196)
T KOG0710|consen   91 ESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEIKAEMEN  170 (196)
T ss_pred             cCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHHHHHhhC
Confidence            366899999999999999999999999 5888652                      26789999999999999999999


Q ss_pred             CCCEEEEEEecccc
Q psy14539        199 DKSELKLTLRLTRE  212 (218)
Q Consensus       199 ~~g~L~VTLpv~re  212 (218)
                        |+|+|++|....
T Consensus       171 --GVL~VvvpK~~~  182 (196)
T KOG0710|consen  171 --GVLTVVVPKLEP  182 (196)
T ss_pred             --CeEEEEEecccc
Confidence              999999998765

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=97.54  E-value=0.00081  Score=48.97  Aligned_cols=67  Identities=24%  Similarity=0.353  Sum_probs=56.7

Q ss_pred             CCcEEEEEEcCC-CCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCC-CEEEEEEecccc
Q psy14539        144 CEDMLVTIQLPG-EQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDK-SELKLTLRLTRE  212 (218)
Q Consensus       144 ~e~LvV~I~LPg-~~~~didLdV~e~~L~L~s~--~Y~L~L~LP~pVd~~~~kAkfd~~~-g~L~VTLpv~re  212 (218)
                      .+.+.|.|.+|. ++.+++.++++++.|.|+..  .|.+...|.++|+++.++  |.... ..++|+|+++.+
T Consensus         7 ~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~l~~~L~~~I~~~~s~--w~~~~~~~v~i~L~K~~~   77 (85)
T cd06467           7 LDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDEST--WTLEDGKLLEITLEKRNE   77 (85)
T ss_pred             CCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCCCceEcCcccCceeEcCCE--EEEeCCCEEEEEEEECCC
Confidence            468999999985 66999999999999999864  688999999999999765  55555 789999998764

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=97.34  E-value=0.0016  Score=47.80  Aligned_cols=65  Identities=22%  Similarity=0.397  Sum_probs=56.5

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecc
Q psy14539        144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLT  210 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s-----~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~  210 (218)
                      .+.+.|.|.++++..+++.+++.++.|.++.     ..|.+.+.|-++|++++++.+--.  +.++|+|.+.
T Consensus         6 ~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~--~kiei~L~K~   75 (84)
T cd06489           6 ESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILS--TKIEIKLKKT   75 (84)
T ss_pred             CCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeC--cEEEEEEEcC
Confidence            4679999999999999999999999999975     369999999999999977766655  7799999875

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=97.24  E-value=0.0031  Score=46.77  Aligned_cols=68  Identities=21%  Similarity=0.360  Sum_probs=58.3

Q ss_pred             CCCcEEEEEEcCCCCC---CcceEEEeCCEEEEEe-----cceEEEcC-CCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539        143 SCEDMLVTIQLPGEQR---ENVDCDLTTQHVDIRS-----IKYRLALP-LPHPVLPHLCQATWDSDKSELKLTLRLTRE  212 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~---~didLdV~e~~L~L~s-----~~Y~L~L~-LP~pVd~~~~kAkfd~~~g~L~VTLpv~re  212 (218)
                      +.+.+.|.|.+|+...   +++.++++++.|.+..     ..|.+.+. |-++|++++++.+...  +.++|+|.+..+
T Consensus         9 t~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~--~ki~i~L~K~~~   85 (92)
T cd06468           9 SDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKT--DRIVITLAKKKE   85 (92)
T ss_pred             CCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeC--CEEEEEEEeCCC
Confidence            4579999999999875   9999999999999975     25888886 9999999988777666  889999998765

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=96.97  E-value=0.01  Score=43.97  Aligned_cols=69  Identities=20%  Similarity=0.238  Sum_probs=55.3

Q ss_pred             CCCcEEEEEEcC-CCCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539        143 SCEDMLVTIQLP-GEQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE  212 (218)
Q Consensus       143 ~~e~LvV~I~LP-g~~~~didLdV~e~~L~L~s~--~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re  212 (218)
                      ..+++.|.|.+| ++..++|.+.++.+.|.+...  ...+...|.++|+++.+.=+... .+.|+|+|.++.+
T Consensus         6 t~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~~~~~g~L~~~I~~d~Stw~i~~-~~~l~i~L~K~~~   77 (85)
T cd06493           6 TEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTWIIKE-NKSLEVSLIKKDE   77 (85)
T ss_pred             eCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCCeEEeCcccCcccccCcEEEEeC-CCEEEEEEEECCC
Confidence            457999999996 788999999999999999753  45688899999999876533322 3479999998764

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=96.46  E-value=0.021  Score=44.72  Aligned_cols=65  Identities=12%  Similarity=0.193  Sum_probs=53.4

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR  211 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s-----~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r  211 (218)
                      +.+.+.|+|.+|+  +.++.++++++.|.+++     ..|.+.|.|=.+|+++.++-+  .....++|.|..+.
T Consensus         9 r~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~--v~~r~ve~~L~K~~   78 (106)
T cd00237           9 RRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHK--RTDRSILCCLRKGK   78 (106)
T ss_pred             CCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEE--eCCceEEEEEEeCC
Confidence            3468999999998  68999999999999986     259999999999999866555  44477888888764

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=96.40  E-value=0.022  Score=42.44  Aligned_cols=66  Identities=11%  Similarity=0.124  Sum_probs=55.2

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539        144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR  211 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s-----~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r  211 (218)
                      .+.+.|.|.+.++..+++.+.++++.|.++.     ..|.+.+.|-++|+++..  +|......++|+|..+.
T Consensus         9 ~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s--~~~v~~~kvei~L~K~~   79 (87)
T cd06488           9 GSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKS--SVNMLPTKVEIKLRKAE   79 (87)
T ss_pred             CCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHc--EEEecCcEEEEEEEeCC
Confidence            3679999999999999999999999987642     269999999999999874  45566699999998764

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>KOG3591|consensus

Probab=95.94  E-value=0.038  Score=46.97  Aligned_cols=68  Identities=13%  Similarity=0.183  Sum_probs=60.8

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEec
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRL  209 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv  209 (218)
                      .-+.+-|.++.-..+.++|.+.+.++.|.|.+.             .|..+..||.-||++.+++...+ .|+|+|+.|.
T Consensus        70 ~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~-dGvLtI~ap~  148 (173)
T KOG3591|consen   70 DKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSS-DGVLTIEAPK  148 (173)
T ss_pred             CCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCC-CceEEEEccC
Confidence            457899999999999999999999999999774             38899999999999999999877 7999999887


Q ss_pred             cc
Q psy14539        210 TR  211 (218)
Q Consensus       210 ~r  211 (218)
                      ..
T Consensus       149 ~~  150 (173)
T KOG3591|consen  149 PP  150 (173)
T ss_pred             CC
Confidence            64

>KOG3247|consensus

Probab=95.66  E-value=0.0052  Score=58.74  Aligned_cols=66  Identities=18%  Similarity=0.145  Sum_probs=61.5

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEecceEEEcCCCCCccC-CCeeeEEECCCCEEEEEEecc
Q psy14539        145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLP-HLCQATWDSDKSELKLTLRLT  210 (218)
Q Consensus       145 e~LvV~I~LPg~~~~didLdV~e~~L~L~s~~Y~L~L~LP~pVd~-~~~kAkfd~~~g~L~VTLpv~  210 (218)
                      +.+.++|..|..+++.+++++.+..+.+.+++|+|++.+|+.|.. ..+.|+|+.+.|...|.+|..
T Consensus        13 e~~~L~I~~p~~~a~~le~~a~~nm~~f~~~pyflrl~~p~~~~~d~~~n~s~d~kd~~~~vK~~K~   79 (466)
T KOG3247|consen   13 EFCTLIIPRPLNQASKLEIDAAANMASFSAGPYFLRLAGPGMVEDDARPNASYDAKDGYAHVKVPKF   79 (466)
T ss_pred             ceEEEEeeccccchhccchhhHhhhhhhccchhHHhhcCcchhhhhccccCccccccceeEEeecCC
Confidence            688999999988899999999999999999999999999999875 888999999999999999874

>KOG1309|consensus

Probab=95.62  E-value=0.037  Score=47.87  Aligned_cols=68  Identities=21%  Similarity=0.326  Sum_probs=58.2

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE  212 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-----~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re  212 (218)
                      ....++|.|..+++...++.|+++++.|.+...     -|.|.+.|=|+|.++..+-+--+  ..++|||+..+.
T Consensus        11 t~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~s--tKVEI~L~K~~~   83 (196)
T KOG1309|consen   11 TETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFS--TKVEITLAKAEI   83 (196)
T ss_pred             CCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeee--eeEEEEeccccc
Confidence            446899999999999999999999999988543     59999999999999987766555  789999998654

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=95.53  E-value=0.16  Score=38.17  Aligned_cols=68  Identities=10%  Similarity=0.144  Sum_probs=55.6

Q ss_pred             CCcEEEEEEcCC---CCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCC-CEEEEEEeccccc
Q psy14539        144 CEDMLVTIQLPG---EQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDK-SELKLTLRLTREF  213 (218)
Q Consensus       144 ~e~LvV~I~LPg---~~~~didLdV~e~~L~L~s~--~Y~L~L~LP~pVd~~~~kAkfd~~~-g~L~VTLpv~re~  213 (218)
                      .+++.|+|.+|.   ++.+++.++++.+.|.+...  .+.+.-.|.++|+.+.+.  |.-+. +.|.|+|-+.++.
T Consensus         7 ~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~i~G~L~~~V~~des~--Wtled~~~l~i~L~K~~~~   80 (87)
T cd06492           7 LSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEESS--WLIEDGKVVTVNLEKINKM   80 (87)
T ss_pred             cCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceEEeCcccCcccccccE--EEEeCCCEEEEEEEECCCC
Confidence            467899999975   67999999999999999864  588999999999998654  55444 5899999988543

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=94.38  E-value=0.18  Score=46.48  Aligned_cols=66  Identities=24%  Similarity=0.347  Sum_probs=57.3

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539        144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR  211 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s-----~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r  211 (218)
                      ...++|.|.+.|+..+++.+++.++.|.|+.     ..|.+.+.|-++|+++.++-+--.  ..++|+|....
T Consensus       165 ~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~--~Kiei~l~K~~  235 (356)
T PLN03088        165 PEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLS--TKIEIRLAKAE  235 (356)
T ss_pred             CCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEec--ceEEEEEecCC
Confidence            3579999999999999999999999998874     269999999999999988877766  68999997664

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=94.38  E-value=0.4  Score=35.81  Aligned_cols=66  Identities=14%  Similarity=0.203  Sum_probs=52.2

Q ss_pred             CcEEEEEEcCCCC--CCcceEEEeCCEEEEEe----cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539        145 EDMLVTIQLPGEQ--RENVDCDLTTQHVDIRS----IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR  211 (218)
Q Consensus       145 e~LvV~I~LPg~~--~~didLdV~e~~L~L~s----~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r  211 (218)
                      ..++|.|...+..  ...+.++..++.|.++-    .-|.+.++|=++|+++. +.++....+.++|+|++..
T Consensus         8 ~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~e   79 (87)
T cd06490           8 SEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILGDKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKKE   79 (87)
T ss_pred             CEEEEEEEEcccCCCCccEEEECCCCEEEEEEECCCceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcCC
Confidence            5789999988654  55556766887888874    35899999999998776 7788876789999999764

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=93.80  E-value=0.65  Score=35.50  Aligned_cols=67  Identities=15%  Similarity=0.379  Sum_probs=52.4

Q ss_pred             CCcEEEEEEcCC-CCCCcceEEEeCCEEEEEec-ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539        144 CEDMLVTIQLPG-EQRENVDCDLTTQHVDIRSI-KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR  211 (218)
Q Consensus       144 ~e~LvV~I~LPg-~~~~didLdV~e~~L~L~s~-~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r  211 (218)
                      .+++.|+|.||. +++++|.++++.+.|.+... .=.|.=.|..+|+++.+.=.... .++|.|+|.+..
T Consensus        14 ~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~~~l~G~L~~~I~~destWtled-~k~l~I~L~K~~   82 (93)
T cd06494          14 MDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQEVLKGKLFDSVVADECTWTLED-RKLIRIVLTKSN   82 (93)
T ss_pred             cCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCEEEEcCcccCccCcccCEEEEEC-CcEEEEEEEeCC
Confidence            478999999985 66999999999999999853 22566689999999876544333 345899999874

Little is known about the function of the proteins in this subgroup.

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=93.58  E-value=0.77  Score=35.80  Aligned_cols=67  Identities=18%  Similarity=0.282  Sum_probs=53.0

Q ss_pred             CCcEEEEEEcCC-C-CCCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCC-CEEEEEEecccc
Q psy14539        144 CEDMLVTIQLPG-E-QRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDK-SELKLTLRLTRE  212 (218)
Q Consensus       144 ~e~LvV~I~LPg-~-~~~didLdV~e~~L~L~s~-----~Y~L~L~LP~pVd~~~~kAkfd~~~-g~L~VTLpv~re  212 (218)
                      -+++.|+|.||. + +++++.++++.+.|.+...     .=.|.=.|.++|+.+.+.  |.-+. ..|.|+|-+.++
T Consensus        13 l~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~--Wtled~~~l~I~L~K~~~   87 (102)
T cd06495          13 YTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSL--WSLEPGKCVLLSLSKCSE   87 (102)
T ss_pred             CCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccce--EEEeCCCEEEEEEEECCC
Confidence            478999999996 3 5899999999999999752     235888999999998654  55433 568999988754

Little is known about the function of the proteins in this subgroup.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	99.59
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	99.43
4fei_A	102	Heat shock protein-related protein; stress respons	99.29
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	99.27
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	99.27
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	99.22
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	99.19
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	99.19
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	99.17
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	99.09
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	99.04
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	98.95
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	98.76
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	98.76
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	98.55
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	98.52
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	97.57
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	97.44
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	97.3
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	97.28
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	97.14
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	96.9
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	96.83
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	96.77
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	96.73
3igf_A	374	ALL4481 protein; two-domained protein consisting o	96.55
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	96.21

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=99.59  E-value=3.4e-15  Score=120.55  Aligned_cols=67  Identities=15%  Similarity=0.202  Sum_probs=64.5

Q ss_pred             CCcEEEEEEcCCCC--CCcceEEEeCCEEEEEecceEEEcCCCCCc-cCCCeeeEEECCCCEEEEEEecc
Q psy14539        144 CEDMLVTIQLPGEQ--RENVDCDLTTQHVDIRSIKYRLALPLPHPV-LPHLCQATWDSDKSELKLTLRLT  210 (218)
Q Consensus       144 ~e~LvV~I~LPg~~--~~didLdV~e~~L~L~s~~Y~L~L~LP~pV-d~~~~kAkfd~~~g~L~VTLpv~  210 (218)
                      .+.|+|+|++|.++  +++++++|+++.|.+++++|+|+|+|||+| +.++++|+|+.++|.|+||||+.
T Consensus        12 ~e~viV~Ik~P~~~~~~sdiei~v~~~~F~F~~~PYyLRL~LP~~V~e~~~~kA~YD~d~~~~~VtLpK~   81 (134)
T 2k8q_A           12 EEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLSPYYLRLRFPHELIDDERSTAQYDSKDECINVKVAKL   81 (134)
T ss_dssp             SSEEEEEEECCSSCCCSSSCCCEECSSSEEECSSSSCEEECCSSCEECCSSCEEEEETTTTEEEEEEEES
T ss_pred             CCEEEEEEEcCccccCccccEEEEeCCEEEEecCCeEEEecCCCeeecCCCcceeEeccCCEEEEEEeCC
Confidence            37999999999999  899999999999999999999999999999 78999999999999999999985

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=99.43  E-value=9.7e-13  Score=103.58  Aligned_cols=80  Identities=20%  Similarity=0.290  Sum_probs=71.4

Q ss_pred             CCCCCCeEEEEEeeeccchhhhhhcCCCCCCCCCCCcEEEEEEcCCCC--CCcceEEEeCCEEEEEecceEEEcCCCCCc
Q psy14539        110 DPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQ--RENVDCDLTTQHVDIRSIKYRLALPLPHPV  187 (218)
Q Consensus       110 d~r~~PeY~i~ykq~V~~eD~~lg~~~k~Pss~~~e~LvV~I~LPg~~--~~didLdV~e~~L~L~s~~Y~L~L~LP~pV  187 (218)
                      |.-.+|.|+|.  |                   ..+.++|+|.+|.++  ++++++.|.++.+.+.+++|+|+|.||++|
T Consensus        13 ~~~iTP~F~it--Q-------------------Ddefv~I~I~~p~ir~~a~~~ei~vd~~~F~F~~~PYyLRL~lP~~v   71 (115)
T 3eud_A           13 DKMITPRFSIT--Q-------------------DEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLSPYYLRLRFPHEL   71 (115)
T ss_dssp             -CCBCCCEEEE--E-------------------CSSEEEEEEECCSCCCCSSSCEEEEETTEEEEEETTEEEEEECSSCE
T ss_pred             CCEeCCcEEEE--E-------------------CCCEEEEEEEcCceecccCccEEEEeCCEEEEecCCeEEEEecCcce
Confidence            55678999983  2                   236999999999998  889999999999999999999999999999


Q ss_pred             -cCCCeeeEEECCCCEEEEEEecc
Q psy14539        188 -LPHLCQATWDSDKSELKLTLRLT  210 (218)
Q Consensus       188 -d~~~~kAkfd~~~g~L~VTLpv~  210 (218)
                       +.++++|+|+.++|.++|+||+.
T Consensus        72 ved~~~~A~YD~d~g~~~v~lpK~   95 (115)
T 3eud_A           72 IDDERSTAQYDSKDECINVKVAKL   95 (115)
T ss_dssp             ECSTTCEEEEETTTTEEEEEEEES
T ss_pred             ecCCCcceEEeCCCcEEEEEEcCC
Confidence             55889999999999999999987

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=99.29  E-value=1.3e-11  Score=93.53  Aligned_cols=66  Identities=15%  Similarity=0.276  Sum_probs=61.2

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEec---------------ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEec
Q psy14539        145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI---------------KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRL  209 (218)
Q Consensus       145 e~LvV~I~LPg~~~~didLdV~e~~L~L~s~---------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv  209 (218)
                      +.++|+++|||++.++|+|.+.++.|.|++.               .|++.+.||..|+.+.++|+|.+  |+|+|+||+
T Consensus        16 ~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~--GvL~I~lpK   93 (102)
T 4fei_A           16 THLDLLLDVPGVDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAG--GVLTVRFEK   93 (102)
T ss_dssp             TEEEEEEECTTCCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEET--TEEEEEEEB
T ss_pred             CEEEEEEECCCCchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEEC--CEEEEEEEc
Confidence            6899999999999999999999999999753               48999999999999999999998  999999998


Q ss_pred             ccc
Q psy14539        210 TRE  212 (218)
Q Consensus       210 ~re  212 (218)
                      +..
T Consensus        94 ~~~   96 (102)
T 4fei_A           94 LRP   96 (102)
T ss_dssp             SSC
T ss_pred             cCc
Confidence            753

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=99.27  E-value=2.2e-11  Score=91.29  Aligned_cols=66  Identities=14%  Similarity=0.253  Sum_probs=60.4

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec--------------------ceEEEcCCCCCccCCCeeeEEECCCCEE
Q psy14539        144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI--------------------KYRLALPLPHPVLPHLCQATWDSDKSEL  203 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~--------------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L  203 (218)
                      .+.++|+++|||++.++|+|.+.++.|.|++.                    .|.+.+.||..|+.+.++|+|.+  |+|
T Consensus        13 ~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~--GvL   90 (100)
T 3gla_A           13 VNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAGRN--GVL   90 (100)
T ss_dssp             SSEEEEEEECTTSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCEEEEET--TEE
T ss_pred             CCEEEEEEECCCCCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeEEEEeC--CEE
Confidence            46899999999999999999999999999852                    37889999999999999999998  999


Q ss_pred             EEEEeccc
Q psy14539        204 KLTLRLTR  211 (218)
Q Consensus       204 ~VTLpv~r  211 (218)
                      +|+||+..
T Consensus        91 ~I~~pK~~   98 (100)
T 3gla_A           91 EIRIPKRP   98 (100)
T ss_dssp             EEEEEBC-
T ss_pred             EEEEecCC
Confidence            99999864

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=99.27  E-value=1.8e-11  Score=90.28  Aligned_cols=67  Identities=12%  Similarity=0.179  Sum_probs=61.6

Q ss_pred             CCCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEE-CCCCEEEEEE
Q psy14539        142 VSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWD-SDKSELKLTL  207 (218)
Q Consensus       142 ~~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkfd-~~~g~L~VTL  207 (218)
                      ...+.++|.++|||++.++|+|.|.++.|.|++.             .|.+.+.||..||.++++|+|. +  |+|+|+|
T Consensus         4 E~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~--GvL~I~l   81 (85)
T 3q9p_A            4 HTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPE--GTLTVEA   81 (85)
T ss_dssp             CCCCEEEEEEECTTTCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTT--SEEEEEE
T ss_pred             CcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCC--CEEEEEE
Confidence            3557999999999999999999999999999863             3889999999999999999998 7  9999999


Q ss_pred             ecc
Q psy14539        208 RLT  210 (218)
Q Consensus       208 pv~  210 (218)
                      |+.
T Consensus        82 PK~   84 (85)
T 3q9p_A           82 PMP   84 (85)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            985

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=99.22  E-value=2.9e-11  Score=89.85  Aligned_cols=66  Identities=9%  Similarity=0.163  Sum_probs=59.9

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEE-ECCCCEEEEEEec
Q psy14539        144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATW-DSDKSELKLTLRL  209 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkf-d~~~g~L~VTLpv  209 (218)
                      .+.++|.++|||++.++|+|.|.++.|.|++.             .|.+.+.||..|+.+.++|+| .+  |+|+|+||+
T Consensus         5 ~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~--GvL~I~~pK   82 (90)
T 2y1y_A            5 KDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSD--GVLTVNGPR   82 (90)
T ss_dssp             -CCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTT--SEEEEEECB
T ss_pred             CCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCC--CEEEEEEEc
Confidence            47899999999999999999999999999874             288999999999999999999 78  999999998


Q ss_pred             cc
Q psy14539        210 TR  211 (218)
Q Consensus       210 ~r  211 (218)
                      ..
T Consensus        83 ~~   84 (90)
T 2y1y_A           83 KQ   84 (90)
T ss_dssp             C-
T ss_pred             CC
Confidence            64

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=99.19  E-value=6.8e-11  Score=92.23  Aligned_cols=67  Identities=15%  Similarity=0.254  Sum_probs=62.3

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeC-CEEEEEec----------------ceEEEcCCCCCccCCCe-eeEEECCCCEEEE
Q psy14539        144 CEDMLVTIQLPGEQRENVDCDLTT-QHVDIRSI----------------KYRLALPLPHPVLPHLC-QATWDSDKSELKL  205 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~didLdV~e-~~L~L~s~----------------~Y~L~L~LP~pVd~~~~-kAkfd~~~g~L~V  205 (218)
                      .+.++|+++|||++.++|+|.+.+ +.|.|++.                .|++.+.||..|+.+++ +|+|.+  |+|+|
T Consensus        33 ~~~~~v~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~~~~--GvL~I  110 (123)
T 3aab_A           33 GGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYEN--GVLTI  110 (123)
T ss_dssp             TTEEEEEEECCSCCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEEEET--TEEEE
T ss_pred             CCEEEEEEECCCCCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeEEcC--CEEEE
Confidence            368999999999999999999999 99999876                58999999999999999 999998  99999


Q ss_pred             EEecccc
Q psy14539        206 TLRLTRE  212 (218)
Q Consensus       206 TLpv~re  212 (218)
                      +||+..+
T Consensus       111 ~lPK~~~  117 (123)
T 3aab_A          111 RIPIAGT  117 (123)
T ss_dssp             EEEGGGE
T ss_pred             EEEcCCC
Confidence            9998754

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=99.19  E-value=8.5e-11  Score=89.23  Aligned_cols=68  Identities=13%  Similarity=0.189  Sum_probs=61.8

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEecc-------------eEEEcCCCCCccCCCeeeEE-ECCCCEEEEEEe
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIK-------------YRLALPLPHPVLPHLCQATW-DSDKSELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~~-------------Y~L~L~LP~pVd~~~~kAkf-d~~~g~L~VTLp  208 (218)
                      ..+.++|.++|||++.++|+|.|.++.|.|++.+             |.+.+.||..|+.+.++|+| .+  |+|+|+||
T Consensus         9 ~~~~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~n--GvL~I~lP   86 (101)
T 2wj5_A            9 DPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPE--GVLSIQAT   86 (101)
T ss_dssp             CSSCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTT--SEEEEEEC
T ss_pred             eCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCC--CEEEEEEE
Confidence            4578999999999999999999999999998642             88999999999999999999 68  99999999


Q ss_pred             cccc
Q psy14539        209 LTRE  212 (218)
Q Consensus       209 v~re  212 (218)
                      +..+
T Consensus        87 K~~~   90 (101)
T 2wj5_A           87 PASA   90 (101)
T ss_dssp             BCCC
T ss_pred             CCCc
Confidence            8643

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=99.17  E-value=1.1e-10  Score=89.48  Aligned_cols=68  Identities=10%  Similarity=0.165  Sum_probs=61.9

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEE-ECCCCEEEEEEe
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATW-DSDKSELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkf-d~~~g~L~VTLp  208 (218)
                      ..+.++|.++|||++.++|+|.|.++.|.|++.             .|.+.+.||..|+.++++|+| .+  |+|+|+||
T Consensus        10 ~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~--GvL~I~~P   87 (106)
T 3l1e_A           10 DRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSAD--GMLTFSGP   87 (106)
T ss_dssp             CSSEEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTT--SEEEEEEE
T ss_pred             cCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCC--CEEEEEEE
Confidence            457999999999999999999999999999873             288999999999999999999 67  99999999


Q ss_pred             cccc
Q psy14539        209 LTRE  212 (218)
Q Consensus       209 v~re  212 (218)
                      +...
T Consensus        88 K~~~   91 (106)
T 3l1e_A           88 KIPS   91 (106)
T ss_dssp             BCCC
T ss_pred             ccCc
Confidence            8743

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=99.09  E-value=2.9e-10  Score=92.52  Aligned_cols=66  Identities=20%  Similarity=0.318  Sum_probs=60.4

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEec---------------------ceEEEcCCCCCccCCCeeeEEECCCCEE
Q psy14539        145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI---------------------KYRLALPLPHPVLPHLCQATWDSDKSEL  203 (218)
Q Consensus       145 e~LvV~I~LPg~~~~didLdV~e~~L~L~s~---------------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L  203 (218)
                      +.++|+++|||++.++|+|.|.++.|.|++.                     .|.+.+.||..|+.+.++|+|.+  |+|
T Consensus        66 ~~~~v~~dlPG~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~~~n--GvL  143 (161)
T 4eld_A           66 QHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFEN--GVL  143 (161)
T ss_dssp             SEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEEET--TEE
T ss_pred             CEEEEEEECCCCChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEEEEC--CEE
Confidence            6999999999999999999999999999652                     47799999999999999999988  999


Q ss_pred             EEEEecccc
Q psy14539        204 KLTLRLTRE  212 (218)
Q Consensus       204 ~VTLpv~re  212 (218)
                      +|+||++.+
T Consensus       144 ~I~lpK~~~  152 (161)
T 4eld_A          144 SVILPKAES  152 (161)
T ss_dssp             EEEEEBCGG
T ss_pred             EEEEEcCCC
Confidence            999998643

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=99.04  E-value=6.8e-10  Score=89.91  Aligned_cols=68  Identities=16%  Similarity=0.214  Sum_probs=60.7

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEe-CCEEEEEec--------------------ceEEEcCCCCCccCCCeeeEEECCCC
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLT-TQHVDIRSI--------------------KYRLALPLPHPVLPHLCQATWDSDKS  201 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~-e~~L~L~s~--------------------~Y~L~L~LP~pVd~~~~kAkfd~~~g  201 (218)
                      ..+.++|+++|||++.++|+|.|. ++.|.|++.                    .|++.+.||..|+.+.++|+|.+  |
T Consensus        51 ~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~n--G  128 (151)
T 1gme_A           51 TPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLEN--G  128 (151)
T ss_dssp             CSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEEET--T
T ss_pred             cCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceEEEEEC--C
Confidence            347899999999999999999995 689999852                    38899999999999999999988  9


Q ss_pred             EEEEEEecccc
Q psy14539        202 ELKLTLRLTRE  212 (218)
Q Consensus       202 ~L~VTLpv~re  212 (218)
                      +|+|+||+..+
T Consensus       129 vL~I~lPK~~~  139 (151)
T 1gme_A          129 VLTVTVPKAEV  139 (151)
T ss_dssp             EEEEEEECCCC
T ss_pred             EEEEEEEccCc
Confidence            99999998753

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=98.95  E-value=1.4e-09  Score=90.54  Aligned_cols=67  Identities=9%  Similarity=0.163  Sum_probs=60.9

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEE-ECCCCEEEEEEe
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATW-DSDKSELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkf-d~~~g~L~VTLp  208 (218)
                      ..+.++|+++|||++.++|+|.|.++.|.|++.             .|.+.+.||..|+.++++|+| .+  |+|+|++|
T Consensus        71 ~~d~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~d--GvL~I~lP  148 (175)
T 2klr_A           71 EKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSD--GVLTVNGP  148 (175)
T ss_dssp             CCSEEEEEECCSSCCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTT--SCEEEEEE
T ss_pred             cCCeEEEEEECCCCChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCC--CEEEEEEE
Confidence            458999999999999999999999999999874             278999999999999999999 68  99999999


Q ss_pred             ccc
Q psy14539        209 LTR  211 (218)
Q Consensus       209 v~r  211 (218)
                      ++.
T Consensus       149 K~~  151 (175)
T 2klr_A          149 RKQ  151 (175)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            864

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=98.76  E-value=1.2e-08  Score=92.15  Aligned_cols=67  Identities=13%  Similarity=0.157  Sum_probs=61.0

Q ss_pred             CCCcEEEEEEc-CCCCCCcceEEEeCCEEEEEec----------------ceEEEcCCCCCccCCCeeeEEECCCCEEEE
Q psy14539        143 SCEDMLVTIQL-PGEQRENVDCDLTTQHVDIRSI----------------KYRLALPLPHPVLPHLCQATWDSDKSELKL  205 (218)
Q Consensus       143 ~~e~LvV~I~L-Pg~~~~didLdV~e~~L~L~s~----------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~V  205 (218)
                      ..+.++|+++| ||+++++|+|+|.++.|+|++.                .|.+.+.||..||.++++|+|.+  |+|+|
T Consensus       231 ~~~~~~v~~~ldPG~~~edi~V~v~~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~d--GvL~i  308 (314)
T 2bol_A          231 GSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVD--GLMVV  308 (314)
T ss_dssp             SCEEEEEEEECCTTCCGGGEEEEESSSEEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEEET--TEEEE
T ss_pred             CCcEEEEEEEcCCCCChHHeEEEEECCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEEeC--CEEEE
Confidence            34689999999 9999999999999999999864                27799999999999999999997  99999


Q ss_pred             EEeccc
Q psy14539        206 TLRLTR  211 (218)
Q Consensus       206 TLpv~r  211 (218)
                      ++|+.+
T Consensus       309 ~~Pk~~  314 (314)
T 2bol_A          309 EAPLFK  314 (314)
T ss_dssp             EEEEEC
T ss_pred             EEecCC
Confidence            999863

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=98.76  E-value=2.2e-08  Score=90.40  Aligned_cols=64  Identities=17%  Similarity=0.211  Sum_probs=60.5

Q ss_pred             cEEEEEEcCCCCCCcceEEEeCCEEEEEec------------ceEEEcCCCCCccCCCeeeEEE-CCCCEEEEEEeccc
Q psy14539        146 DMLVTIQLPGEQRENVDCDLTTQHVDIRSI------------KYRLALPLPHPVLPHLCQATWD-SDKSELKLTLRLTR  211 (218)
Q Consensus       146 ~LvV~I~LPg~~~~didLdV~e~~L~L~s~------------~Y~L~L~LP~pVd~~~~kAkfd-~~~g~L~VTLpv~r  211 (218)
                      .++|+++|||+++++|+|.|.++.|.|++.            .|.+.+.||..|+.++++|+|. +  |+|+|+||+..
T Consensus       113 ~~~v~~dlPG~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~n--GVL~I~lPK~~  189 (314)
T 2bol_A          113 HFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTD--DVLVIEAPVNE  189 (314)
T ss_dssp             EEEEEEECTTCCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSS--SEEEEEEEBSS
T ss_pred             EEEEEEECCCCchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCC--CEEEEEEeccC
Confidence            799999999999999999999999999874            4899999999999999999999 8  99999999864

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=98.55  E-value=2.2e-07  Score=67.89  Aligned_cols=66  Identities=23%  Similarity=0.335  Sum_probs=60.1

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539        145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE  212 (218)
Q Consensus       145 e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-----~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re  212 (218)
                      +.+.|+|.+|++..+++.++++++.|.|+..     .|.+.+.|+++|+++++++++..  +.|+|+|+++.+
T Consensus        12 ~~V~v~i~~~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~~~s~~~~~~--~~l~i~L~K~~~   82 (92)
T 2xcm_C           12 EEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVLS--TKIEICLAKADI   82 (92)
T ss_dssp             TEEEEEEECCSCCGGGEEEEECSSBEEEEECCTTSCCEEECCBBSSCBCGGGCEEEECS--SCEEEEEEBSSS
T ss_pred             CEEEEEEEECCCChHHeEEEEECCEEEEEEEcCCCcEEEEeeEcCCccCchhEEEEEEC--CEEEEEEEcCCC
Confidence            5899999999999999999999999999863     69999999999999999999987  789999998754

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=98.52  E-value=1.8e-07  Score=71.38  Aligned_cols=67  Identities=18%  Similarity=0.396  Sum_probs=60.7

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539        144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE  212 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-----~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re  212 (218)
                      .+.+.|+|.||++..+++.++++++.|.|+..     .|.+.+.|+++|+++.+++++..  +.|+|+|+++..
T Consensus        18 ~~~V~v~i~l~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~e~s~~~~~~--~~l~i~L~K~~~   89 (114)
T 1rl1_A           18 ESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLS--TKIEIKLKKPEA   89 (114)
T ss_dssp             SSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECS--SSEEEEEECSSC
T ss_pred             CCEEEEEEEeCCCCHHHCEEEEEcCEEEEEEEeCCCcEEEEEeeCCCcCCccccEEEEEC--CEEEEEEEcCCC
Confidence            36899999999999999999999999999863     69999999999999999999987  889999998754

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=97.57  E-value=0.00062  Score=52.79  Aligned_cols=82  Identities=12%  Similarity=0.186  Sum_probs=65.1

Q ss_pred             CCCCCCCCeEEEEEeeeccchhhhhhcCCCCCCCCCCCcEEEEEEcC-CC-CCCcceEEEeCCEEEEEe-----cceEEE
Q psy14539        108 NLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLP-GE-QRENVDCDLTTQHVDIRS-----IKYRLA  180 (218)
Q Consensus       108 ~~d~r~~PeY~i~ykq~V~~eD~~lg~~~k~Pss~~~e~LvV~I~LP-g~-~~~didLdV~e~~L~L~s-----~~Y~L~  180 (218)
                      .+.+...|.|.-.  |                   ..+++.|+|.|| ++ +.+++.++++++.|.+..     ..|.+.
T Consensus        13 ~~nG~~~~~y~W~--Q-------------------t~~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~   71 (124)
T 1wgv_A           13 SYNGAVRENYTWS--Q-------------------DYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLME   71 (124)
T ss_dssp             SSSSBCCSSCEEE--E-------------------ETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEE
T ss_pred             ccCCCcCCcEEEE--E-------------------cccEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEccCCCceEEc
Confidence            5667778888863  2                   225789999999 67 799999999999999976     248899


Q ss_pred             cCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539        181 LPLPHPVLPHLCQATWDSDKSELKLTLRLTR  211 (218)
Q Consensus       181 L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r  211 (218)
                      ..|.++|+++.++-+... ...|.|+|.++.
T Consensus        72 ~~L~~~I~~e~S~w~i~~-~k~v~i~L~K~~  101 (124)
T 1wgv_A           72 GKLTHKINTESSLWSLEP-GKCVLVNLSKVG  101 (124)
T ss_dssp             EEBSSCBCTTTCEEEECT-TSEEEEEECBSS
T ss_pred             ccccCcCCCcCCEEEEeC-CCEEEEEEEECC
Confidence            999999999987655543 235999998874

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.44  E-value=0.00091  Score=52.05  Aligned_cols=66  Identities=20%  Similarity=0.251  Sum_probs=58.0

Q ss_pred             CcEEEEEEcCCC---CCCcceEEEeCCEEEEEec-----ceEEEcC-CCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539        145 EDMLVTIQLPGE---QRENVDCDLTTQHVDIRSI-----KYRLALP-LPHPVLPHLCQATWDSDKSELKLTLRLTRE  212 (218)
Q Consensus       145 e~LvV~I~LPg~---~~~didLdV~e~~L~L~s~-----~Y~L~L~-LP~pVd~~~~kAkfd~~~g~L~VTLpv~re  212 (218)
                      +.+.|.|.||++   ..+++.++++++.|.|+..     .|.+.+. |-++|++++++.+...  +.++|+|.++.+
T Consensus        30 ~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v~~--~kVei~L~K~~~  104 (127)
T 1x5m_A           30 KFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKT--DTVLILCRKKVE  104 (127)
T ss_dssp             TEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEEET--TEEEEEEECSSS
T ss_pred             CEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEEeC--CEEEEEEEECCC
Confidence            689999999998   7899999999999999853     6999995 9999999988777766  889999988753

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=97.30  E-value=0.00068  Score=53.94  Aligned_cols=66  Identities=15%  Similarity=0.279  Sum_probs=57.4

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----------------ceEEEcCCCCCccCCCeeeEEECCCCEEEEE
Q psy14539        144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----------------KYRLALPLPHPVLPHLCQATWDSDKSELKLT  206 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-----------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VT  206 (218)
                      .+.++|.|.++++..+++.++++++.|.|+..                 .|.+.+.|-++|+++.++.+...  ..++|+
T Consensus        29 ~~~V~vtI~~k~v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I~pe~S~~~v~~--~kIeI~  106 (134)
T 1wh0_A           29 PDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTA--SRIDIC  106 (134)
T ss_dssp             TTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEEECS--SEEEEE
T ss_pred             CCEEEEEEEeCCCCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEeccccccCCchhCEEEEeC--CEEEEE
Confidence            35899999999999999999999999999752                 79999999999999887766665  889999


Q ss_pred             Eeccc
Q psy14539        207 LRLTR  211 (218)
Q Consensus       207 Lpv~r  211 (218)
                      |.++.
T Consensus       107 L~K~e  111 (134)
T 1wh0_A          107 LRKRQ  111 (134)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            98763

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=97.28  E-value=0.001  Score=51.63  Aligned_cols=67  Identities=7%  Similarity=0.033  Sum_probs=56.6

Q ss_pred             CcEEEEEEcCC---CCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539        145 EDMLVTIQLPG---EQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE  212 (218)
Q Consensus       145 e~LvV~I~LPg---~~~~didLdV~e~~L~L~s~--~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re  212 (218)
                      +++.|+|.||.   ++++++.++++.+.|.+...  .|.+...|.++|+++.+.-+... .+.|.|+|.+..+
T Consensus        26 ~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~~~g~L~~~I~~deS~w~i~~-~~~i~i~L~K~~~   97 (121)
T 3qor_A           26 SELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIAD-GAVVTVHLEKINK   97 (121)
T ss_dssp             SEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETTSCCSEEEEBSSCBCGGGCEEEEET-TTEEEEEEEBSSS
T ss_pred             ceEEEEEECCCCCcccccceEEEEEcCEEEEEEcCcceEEeccccccccccccEEEEcC-CCEEEEEEEECCC
Confidence            68999999996   67999999999999999865  68999999999999987666554 1389999987754

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=97.14  E-value=0.002  Score=50.24  Aligned_cols=68  Identities=9%  Similarity=0.046  Sum_probs=56.8

Q ss_pred             CCcEEEEEEcCC---CCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539        144 CEDMLVTIQLPG---EQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE  212 (218)
Q Consensus       144 ~e~LvV~I~LPg---~~~~didLdV~e~~L~L~s~--~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re  212 (218)
                      .+++.|+|.||.   ++.+++.++++.+.|.+...  .|.+...|.++|+++.++-+... .+.|.|+|.++.+
T Consensus        16 ~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~~~~~L~~~I~~e~s~w~i~~-~k~v~i~L~K~~~   88 (131)
T 1wfi_A           16 LAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIED-GKVVTVHLEKINK   88 (131)
T ss_dssp             SSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCSBCSCBSSCBCSTTCEEEEET-TTEEEEEEEBSSS
T ss_pred             CCEEEEEEECCCCCcccccceEEEEeCCEEEEEECCceEEEecccccccccccCEEEEcC-CCEEEEEEEECCC
Confidence            368899999994   78999999999999999863  47899999999999987666655 1389999988754

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.00062  Score=53.85  Aligned_cols=63  Identities=13%  Similarity=0.279  Sum_probs=53.1

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----------cceEEEcCCCCCccCCCeeeEEECCCCE-EEEEEeccc
Q psy14539        145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----------IKYRLALPLPHPVLPHLCQATWDSDKSE-LKLTLRLTR  211 (218)
Q Consensus       145 e~LvV~I~LPg~~~~didLdV~e~~L~L~s-----------~~Y~L~L~LP~pVd~~~~kAkfd~~~g~-L~VTLpv~r  211 (218)
                      +.+.|+|.+|++  .++.++++++.|.|++           ..|.+.|.|.++|++++++.+...  +. ++|+|.++.
T Consensus        23 ~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~S~~~v~~--~~~vei~L~K~~   97 (134)
T 2cg9_X           23 NYVLITVSIADC--DAPELTIKPSYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMHKVAN--GQHYFLKLYKKD   97 (134)
T ss_dssp             SEEEEECCCSSE--ESCCCCBCSSEEEECCEEC-------CEEBCEEEECSSCCCSSSEEEEECC--C--CEEEEEECS
T ss_pred             CEEEEEEEecCC--CceEEEEECCEEEEEEecccccCCccCceEEEEEEChhhccccccEEEECC--CEEEEEEEEECC
Confidence            568999999996  4889999999999963           359999999999999999888865  55 999998764

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=96.83  E-value=0.0018  Score=50.25  Aligned_cols=64  Identities=11%  Similarity=0.166  Sum_probs=54.4

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe------cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539        144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS------IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR  211 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s------~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r  211 (218)
                      .+.+.|+|.+|+.  +++.++++++.|.+++      ..|.+.+.|-++|++++++.+...  +.++|+|.++.
T Consensus        12 ~~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~~e~S~~~v~~--~kiei~L~K~~   81 (125)
T 1ejf_A           12 RDYVFIEFCVEDS--KDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTD--RSILCCLRKGE   81 (125)
T ss_dssp             SSEEEEEECCTTE--EEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECS--SCEEEEEEESS
T ss_pred             CCEEEEEEEecCC--CceEEEEECCEEEEEEEeCCCCceEEEEEEccceeccccCEEEECC--CEEEEEEEECC
Confidence            4679999999995  7999999999999984      259999999999999987777654  67999998864

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=96.77  E-value=0.0043  Score=48.49  Aligned_cols=64  Identities=5%  Similarity=0.058  Sum_probs=53.0

Q ss_pred             CCcEEEEEEcC-CCCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecc
Q psy14539        144 CEDMLVTIQLP-GEQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLT  210 (218)
Q Consensus       144 ~e~LvV~I~LP-g~~~~didLdV~e~~L~L~s~--~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~  210 (218)
                      .+.+.|.|.|| +++.+++.++++.+.|.|...  . .+...|.++|+++.++-+...  +.|.|+|.++
T Consensus        13 ~~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~~g~~-~~~~~L~~~I~~e~S~w~i~~--~kv~i~L~K~   79 (131)
T 2o30_A           13 LNEINIQFPVTGDADSSAIKIRMVGKKICVKNQGEI-VIDGELLHEVDVSSLWWVING--DVVDVNVTKK   79 (131)
T ss_dssp             TTEEEEEEECC---CCSCEEEEEETTEEEEEETTEE-EEEEEBSSCEEEEEEEEEEET--TEEEEEEEES
T ss_pred             CCEEEEEEECCCCCCccceEEEEECCEEEEEECCEe-eEccccccccccccCEEEEeC--CEEEEEEEEC
Confidence            36889999996 778999999999999999753  4 789999999999887766665  6699999876

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=96.73  E-value=0.0056  Score=49.60  Aligned_cols=68  Identities=19%  Similarity=0.389  Sum_probs=55.6

Q ss_pred             CCcEEEEEEcC-CCCCCcceEEEeCCEEEEEec-ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539        144 CEDMLVTIQLP-GEQRENVDCDLTTQHVDIRSI-KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE  212 (218)
Q Consensus       144 ~e~LvV~I~LP-g~~~~didLdV~e~~L~L~s~-~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re  212 (218)
                      .+++.|+|.|| +++.++|.++++.+.|.|... ...+...|.++|+++.++-+... .+.|.|+|.++..
T Consensus        22 ~~eV~v~I~lp~~~~~kdv~V~i~~~~L~v~~kg~~~l~g~L~~~I~~eeS~w~i~~-~k~v~I~L~K~~~   91 (157)
T 2rh0_A           22 LEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGREILKGKLFDSTIADEGTWTLED-RKMVRIVLTKTKR   91 (157)
T ss_dssp             SSEEEEEEECCTTCCGGGEEEEECSSEEEEEETTEEEEEEEBSSCBCGGGCEEEEEC-CCEEEEEEEBSSC
T ss_pred             CCEEEEEEECCCCCcccceEEEEecCEEEEEECCEEEEeeccccccCccccEEEEcC-CcEEEEEEEEcCC
Confidence            36899999998 677999999999999999753 23589999999999987766665 2358999988753

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=96.55  E-value=0.008  Score=54.86  Aligned_cols=61  Identities=18%  Similarity=0.247  Sum_probs=56.5

Q ss_pred             cEEEEEEcCCCCCCcceEEEeCCEEEEEecceEEEcCCCCCccC-CCeeeEEECCCCEEEEEEe
Q psy14539        146 DMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLP-HLCQATWDSDKSELKLTLR  208 (218)
Q Consensus       146 ~LvV~I~LPg~~~~didLdV~e~~L~L~s~~Y~L~L~LP~pVd~-~~~kAkfd~~~g~L~VTLp  208 (218)
                      ...+++.||+++.++|+|.-.++.|.|+.-.|++.+.||....- .-+.|+|..  +.|+|++-
T Consensus       306 ~~~~~l~lP~~~~~~~~l~~~gdeL~v~~g~~rR~i~LP~~L~~~~v~~A~~~~--~~L~i~~~  367 (374)
T 3igf_A          306 NRQVRLFLPGFDKKQVKLTQYGPEVTVEAGDQRRNIFLPPALSGRPITGAKFQN--NYLIISFL  367 (374)
T ss_dssp             TTEEEEECTTCCGGGCEEEEETTEEEEEETTEEEEEECCTTTTTCCEEEEEEET--TEEEEEEC
T ss_pred             cEEEEEECCCCCHHHeEEEEECCeEEEEECCEeecccCCHHHcCCCccccEEEC--CEEEEEEe
Confidence            57899999999999999999999999999999999999999875 567999999  99999874

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=96.21  E-value=0.0047  Score=49.80  Aligned_cols=63  Identities=8%  Similarity=0.298  Sum_probs=52.7

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEe-CCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539        144 CEDMLVTIQLPGEQRENVDCDLT-TQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR  211 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~didLdV~-e~~L~L~s~-----~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r  211 (218)
                      .+.++|+|.||++  .++.++++ ++.|.|++.     .|.+.|.|=++|+++ ++.+...  ..++|+|.++.
T Consensus        13 ~~~V~ltI~l~~~--~~v~V~~~~~~~l~~~~~~~~~~~y~~~l~L~~~Idpe-S~~~v~~--~kIei~L~K~e   81 (150)
T 2kmw_A           13 SDKVYLTVALPDA--KDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTE-YRKNVGL--RNIIFSIQKEE   81 (150)
T ss_dssp             SSEEEEEECCSSE--EEEEECCCTTEEEEEEEETTTTEEEEEEEEBSSCEEEE-EEEEEES--SSEEEEEEECC
T ss_pred             CCEEEEEEEeCCC--CceEEEEecCCEEEEEEEcCCCceEEEEeEhhhccccc-ceEEecC--CEEEEEEEECC
Confidence            3579999999996  58899999 789999863     699999999999999 7666655  67999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d1rl1a_	92	b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo	1e-04

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIR-----SIKYRLALPLPHPVLPHLCQATWDSD 199
             +++T+ +   Q+ +V+ + + + +           Y L L L HP++P        S 
Sbjct: 12  SQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLST 71

Query: 200 KSELKL 205
           K E+KL
Sbjct: 72  KIEIKL 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	99.13
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	98.96
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	97.86
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	96.9
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	96.85
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	96.58
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	95.34

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.13  E-value=9.7e-11  Score=88.13  Aligned_cols=67  Identities=19%  Similarity=0.298  Sum_probs=60.7

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec---------------------ceEEEcCCCCCccCCCeeeEEECCCC
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI---------------------KYRLALPLPHPVLPHLCQATWDSDKS  201 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~---------------------~Y~L~L~LP~pVd~~~~kAkfd~~~g  201 (218)
                      ..+.++|.++|||++.++|+|.|.++.|.|++.                     .|++.+.||..|+.++++|+|++  |
T Consensus        18 ~~~~~~i~~~lPG~~~edi~v~v~~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~A~~~n--G   95 (115)
T d1shsa_          18 GDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFEN--G   95 (115)
T ss_dssp             CSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEEET--T
T ss_pred             cCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEeccccccccccEEEEeeecccceEEEEecCCceeecceEEEEEC--C
Confidence            347899999999999999999999999999762                     26688999999999999999999  9


Q ss_pred             EEEEEEeccc
Q psy14539        202 ELKLTLRLTR  211 (218)
Q Consensus       202 ~L~VTLpv~r  211 (218)
                      +|+|+||...
T Consensus        96 vL~I~lpK~~  105 (115)
T d1shsa_          96 VLSVILPKAE  105 (115)
T ss_dssp             EEEEEEEBCG
T ss_pred             EEEEEEEeCC
Confidence            9999999764

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=98.96  E-value=1.1e-09  Score=86.20  Aligned_cols=67  Identities=16%  Similarity=0.223  Sum_probs=58.4

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCC-EEEEEec--------------------ceEEEcCCCCCccCCCeeeEEECCCC
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQ-HVDIRSI--------------------KYRLALPLPHPVLPHLCQATWDSDKS  201 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~-~L~L~s~--------------------~Y~L~L~LP~pVd~~~~kAkfd~~~g  201 (218)
                      ..+.++|+++|||+..++|+|+|+++ .|.+++.                    .|...+.||..||.++++|+|.+  |
T Consensus        50 ~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n--G  127 (150)
T d1gmea_          50 TPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLEN--G  127 (150)
T ss_dssp             CSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEEET--T
T ss_pred             CCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeeceeEEEEEC--C
Confidence            34789999999999999999999875 5676542                    37789999999999999999998  9


Q ss_pred             EEEEEEeccc
Q psy14539        202 ELKLTLRLTR  211 (218)
Q Consensus       202 ~L~VTLpv~r  211 (218)
                      +|+||||+..
T Consensus       128 vL~I~lpK~~  137 (150)
T d1gmea_         128 VLTVTVPKAE  137 (150)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEEcCC
Confidence            9999999864

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.6e-05  Score=56.43  Aligned_cols=66  Identities=18%  Similarity=0.402  Sum_probs=58.5

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539        144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR  211 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-----~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r  211 (218)
                      .+.+.|.|.+|++..+++.+++.++.|.+...     .|.+.+.|-++|+++.++.++..  +.++|+|.++.
T Consensus        11 ~~~V~i~i~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~~~~--~kiei~L~K~~   81 (92)
T d1rl1a_          11 ESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLS--TKIEIKLKKPE   81 (92)
T ss_dssp             SSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECS--SSEEEEEECSS
T ss_pred             CCEEEEEEEeCCCChHheEEEEecCEEEEEEEcCCCcEEEEEEEcCcccCchhcEEEEeC--CEEEEEEEECC
Confidence            46899999999999999999999999998753     69999999999999988888776  78999998753

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.0015  Score=50.14  Aligned_cols=66  Identities=15%  Similarity=0.295  Sum_probs=58.9

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----------------ceEEEcCCCCCccCCCeeeEEECCCCEEEEEE
Q psy14539        145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----------------KYRLALPLPHPVLPHLCQATWDSDKSELKLTL  207 (218)
Q Consensus       145 e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-----------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTL  207 (218)
                      +.++|.|.+.++..+++.++++++.|.|.-+                 .|.+.++|-++|+++.++.+...  ..++|+|
T Consensus        30 ~~V~VtI~~K~v~ke~~~V~f~~~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~pe~S~~~v~~--~kiei~L  107 (134)
T d1wh0a_          30 DSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTA--SRIDICL  107 (134)
T ss_dssp             TEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEEECS--SEEEEEE
T ss_pred             CEEEEEEEeCCCchhheEEEEeCCEEEEEEECCCCcceeeccccCcCeeEEEeeecccccChhHcEEEeCC--CEEEEEE
Confidence            5899999999999999999999999999752                 59999999999999998888877  8899999


Q ss_pred             ecccc
Q psy14539        208 RLTRE  212 (218)
Q Consensus       208 pv~re  212 (218)
                      .++..
T Consensus       108 ~K~~~  112 (134)
T d1wh0a_         108 RKRQS  112 (134)
T ss_dssp             EESSS
T ss_pred             EeCCC
Confidence            87643

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00089  Score=48.72  Aligned_cols=65  Identities=11%  Similarity=0.170  Sum_probs=53.6

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec------ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539        143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR  211 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r  211 (218)
                      ..+.+.|+|.+|+  ..++.++++.+.|.|+..      .|.+.+.|-++|+++.++.+...  +.++|+|..+.
T Consensus        11 t~~~V~i~I~v~~--~~~~~v~i~~~~l~~~~~~~~~~~~y~l~~~L~~~I~~~~s~~~v~~--~kiei~L~K~~   81 (110)
T d1ejfa_          11 RRDYVFIEFCVED--SKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTD--RSILCCLRKGE   81 (110)
T ss_dssp             CSSEEEEEECCTT--EEEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECS--SCEEEEEEESS
T ss_pred             CCCEEEEEEEeCC--CCCceEEEEeceEEEEEEecCCCceEEEEEEcccCcccCccEEEEeC--CEEEEEEEEcC
Confidence            4579999999997  467888888888888632      69999999999999888777776  77999998764

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0039  Score=46.13  Aligned_cols=66  Identities=12%  Similarity=0.174  Sum_probs=51.4

Q ss_pred             CcEEEEEEcCC--CCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539        145 EDMLVTIQLPG--EQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR  211 (218)
Q Consensus       145 e~LvV~I~LPg--~~~~didLdV~e~~L~L~s-----~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r  211 (218)
                      +.+.|+|.||.  ++.++|.++++.+.|.+..     ..|.+...|.++|+++.+.-++.. .+.+.++|....
T Consensus        29 ~~V~i~i~lp~~~~k~kdv~v~~~~~~l~v~v~~~~~~~~~l~g~L~~~I~~deS~w~i~~-~~~~i~~lkK~~  101 (124)
T d1wgva_          29 TDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEP-GKCVLVNLSKVG  101 (124)
T ss_dssp             TEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEECT-TSEEEEEECBSS
T ss_pred             CEEEEEEEeCCCCcchhhEEEEEEeCEEEEEEeccCCcceEEeCcccCcccccccEEEEeC-CCEEEEEEEecC
Confidence            68999999996  4478999999999999874     268899999999999988766655 234555555443

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.34  E-value=0.039  Score=41.23  Aligned_cols=67  Identities=9%  Similarity=0.066  Sum_probs=52.8

Q ss_pred             CcEEEEEEcC---CCCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539        145 EDMLVTIQLP---GEQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE  212 (218)
Q Consensus       145 e~LvV~I~LP---g~~~~didLdV~e~~L~L~s~--~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re  212 (218)
                      +++.|.|.+|   ++++++|.++++.+.|.|...  ...+.-.|.++|+++.+.=.+.. .+.|.|+|.++.+
T Consensus        17 ~eV~I~V~~~~~~~~~~~di~v~i~~~~l~v~v~~~~~ll~g~L~~~I~~des~W~ied-~~~l~i~L~K~~~   88 (131)
T d1wfia_          17 AELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIED-GKVVTVHLEKINK   88 (131)
T ss_dssp             SEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCSBCSCBSSCBCSTTCEEEEET-TTEEEEEEEBSSS
T ss_pred             CEEEEEEEcCCCCCcchhhEEEEeeCCEEEEEEcCCceeecccccCcccccccEEEEeC-CCEEEEEEEECCC
Confidence            5677777665   567999999999999999853  35677799999999888766653 4689999998654