Psyllid ID: psy14653

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MEEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTPVKQFVDAVDGSHHPLTQLLSLLQEDIGQLSLLGGQELELLSDMDPDNLLDIIPDKMFLNQVKEASCRFLSDKRNAQEALDLLKLYHKSYINNTNSNNDASQTKKTRLSP
Secondary Structure (PSIPRED)
ccccccccEEEEcccccEEEEEEEccHHHHHHHHHHHHcccccccEEEEcccccEEcccHHHcccccccEEEEEccccccccccccccccccccccHHHHHHHHHcccccEEEccccHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEcccccccEEEEcccHHHHHHHHHHHHccccccEEEEEEccccEEccHHHHHccccccEEEEEEcccEEccccccccccccccccHHHHHHHHHHHHHccHcccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
meeesqrpykiidykrerkvGVVASSLEEIKRKAQDKLSNTSDNIKILLesdgteideedyfctlennttlmvlfdnekwtpvkqfvdavdgshhPLTQLLSLLQEDIGQlsllggqelellsdmdpdnlldiipdkmflNQVKEASCRFLSDKRNAQEALDLLKLYHKSYInntnsnndasqtkktrlsp
Flexible Loop (DISEMBL)
meeesqrpykiidykrerkvgvVASSLEEIkrkaqdklsntsdniKILLesdgteidEEDYFCTLENNTTLMVLFDNEKWTPVKQFVDAVDGSHHPLTQLLSLLQEDIGQLSLLGGQELELLSDMDPDNLLDIIPDKMFLNQVKEASCRFLSDKRNAQEALDLLKLYHKSYinntnsnndasqtkktrlsp
Low Complexity Region (SEG)
MEEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTPVKQFVDAVDGSHHPLTQLLSLLQEDIGqlsllggqelellsDMDPDNLLDIIPDKMFLNQVKEASCRFLSDKRNAQEALDLLKLYHKSYINNTNSNNDASQTKKTRLSP
Disordered region (IsUnstruct)
**********IIDYK****VGV**********************IKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTPVKQFVDAVDGSHHPLTQLLSLLQEDIGQLSLLGGQELELLSDMDPDNLLDIIPDKMFLNQVKEASCRFLSDKRNAQEALDLLKLYHKSYI*******************
Disordered Region (DISOPRED)
*****QR**KIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTPV********************LQEDIGQLSLLGGQELELLSDMDPDNLLDIIPDKMFLNQVKEASC************LDLLK**************************
Disordered Region (DISEMBL)
MEEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTPVKQFVDAVDGSHHPLTQLLSLLQEDIGQLSLLGGQELELLSDMDPDNLLDIIPDKMFLNQVKEASCRFLSDKRNAQEALDLLKLYHKSYINNTNSN*************
Disordered Region (DISPRO)
*****QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTPVKQFVDAVDGSHHPLTQLLSLLQEDIGQLSLLGGQELELLSDMDPDNLLDIIPDKMFLNQVKEASCRFLSDKRNAQEALDLLKLYHKSYIN******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEESQRPYKIIDYKRERKVGVVxxxxxxxxxxxxxxxxxxxxxIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTPVKQFVDAVDGSHHPLTQLLSLLQEDIGQLSLLGGQELELLSDMDPDNLLDIIPDKMFLNQVKEASCRFLSDKRNAQEALDLLKLYHKSYINNTNSNNDASQTKKTRLSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
O70302	217	Cell death activator CIDE	yes	N/A	0.424	0.373	0.407	8e-13
O60543	219	Cell death activator CIDE	yes	N/A	0.424	0.369	0.395	9e-12
Q9UHD4	219	Cell death activator CIDE	no	N/A	0.424	0.369	0.378	1e-10
O70303	219	Cell death activator CIDE	no	N/A	0.397	0.347	0.402	2e-10
Q96AQ7	238	Cell death activator CIDE	no	N/A	0.455	0.365	0.336	4e-09
Q3T191	219	Cell death activator CIDE	no	N/A	0.424	0.369	0.365	4e-09
P56198	239	Cell death activator CIDE	no	N/A	0.424	0.338	0.358	1e-08
F1MN90	222	Cell death activator CIDE	no	N/A	0.424	0.364	0.333	2e-08
O00273	331	DNA fragmentation factor	no	N/A	0.612	0.353	0.323	1e-07
Q5XI33	238	Cell death activator CIDE	no	N/A	0.413	0.331	0.354	2e-07

>sp|O70302|CIDEA_MOUSE Cell death activator CIDE-A OS=Mus musculus GN=Cidea PE=1 SV=2

 Score = 73.6 bits (179), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 54/81 (66%)

Query: 7   RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
           RP+++ ++ R  + GV+ASSL+E+  K  D L  T+  + ++LE DGT +D E++F TL 
Sbjct: 35  RPFRVSNHDRSSRRGVMASSLQELISKTLDVLVITTGLVTLVLEEDGTVVDTEEFFQTLR 94

Query: 67  NNTTLMVLFDNEKWTPVKQFV 87
           +NT  M+L   +KWTP  ++V
Sbjct: 95  DNTHFMILEKGQKWTPGSKYV 115

Activates apoptosis.
Mus musculus (taxid: 10090)

>sp|O60543|CIDEA_HUMAN Cell death activator CIDE-A OS=Homo sapiens GN=CIDEA PE=1 SV=1

 Score = 70.1 bits (170), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 51/81 (62%)

Query: 7   RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
           RP+++ ++ R  + GV+ASSL+E+  K  D L   +  + ++LE DGT +D E++F TL 
Sbjct: 35  RPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLG 94

Query: 67  NNTTLMVLFDNEKWTPVKQFV 87
           +NT  M+L   +KW P  Q V
Sbjct: 95  DNTHFMILEKGQKWMPGSQHV 115

Activates apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q9UHD4|CIDEB_HUMAN Cell death activator CIDE-B OS=Homo sapiens GN=CIDEB PE=1 SV=2

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 6   QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL 65
           QRP+++ D+KR  + G+ A++ +E+  KA + L   +  + ++LE DGT +D ED+F  L
Sbjct: 35  QRPFRVCDHKRTIRKGLTAATRQELLAKALETLL-LNGVLTLVLEEDGTAVDSEDFFQLL 93

Query: 66  ENNTTLMVLFDNEKWTPVKQFV 87
           E++T LMVL   + W+P +  V
Sbjct: 94  EDDTCLMVLQSGQSWSPTRSGV 115

Activates apoptosis.

Homo sapiens (taxid: 9606)

>sp|O70303|CIDEB_MOUSE Cell death activator CIDE-B OS=Mus musculus GN=Cideb PE=1 SV=2

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 6   QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL 65
           QRP+++ D+KR  + G+ A+SL+E+  K  + L      + ++LE DGT +D ED+F  L
Sbjct: 35  QRPFRVCDHKRTVRKGLTAASLQELLDKVLETLL-LRGVLTLVLEEDGTAVDSEDFFQLL 93

Query: 66  ENNTTLMVLFDNEKWTP 82
           E++T LMVL   + W+P
Sbjct: 94  EDDTCLMVLEQGQSWSP 110

Activates apoptosis.

Mus musculus (taxid: 10090)

>sp|Q96AQ7|CIDEC_HUMAN Cell death activator CIDE-3 OS=Homo sapiens GN=CIDEC PE=1 SV=1

 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 7   RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
           RP ++    R  + G++A SLE++  K +D L        ++LE DGT ++ E+YF  L 
Sbjct: 43  RPCRVSTADRSVRKGIMAYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALA 102

Query: 67  NNTTLMVLFDNEKWTPVKQFVDAVDGSHHPLT 98
            +T  MVL   +KW P  +      G+ HPL+
Sbjct: 103 GDTVFMVLQKGQKWQPPSE-----QGTRHPLS 129

Induces apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q3T191|CIDEB_BOVIN Cell death activator CIDE-B OS=Bos taurus GN=CIDEB PE=2 SV=1

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 6   QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL 65
           QRP+++ D KR  + G+ A++ +E+  KA + L   S  + ++LE DGT ++ E++F  L
Sbjct: 35  QRPFRVCDNKRTTRKGLTAATRQELLDKALEALV-LSGALTLVLEEDGTTVESEEFFQLL 93

Query: 66  ENNTTLMVLFDNEKWTPVKQFV 87
           E++T LMVL   + W+P +  V
Sbjct: 94  EDDTCLMVLELGQSWSPRRSGV 115

Activates apoptosis.

Bos taurus (taxid: 9913)

>sp|P56198|CIDEC_MOUSE Cell death activator CIDE-3 OS=Mus musculus GN=Cidec PE=1 SV=2

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%)

Query: 2   EEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDY 61
           E    RP ++    R+ + G++A SLE++  K QD L        ++LE DGT ++ E+Y
Sbjct: 38  ETPRARPCRVSTADRKVRKGIMAHSLEDLLNKVQDILKLKDKPFSLVLEEDGTIVETEEY 97

Query: 62  FCTLENNTTLMVLFDNEKWTP 82
           F  L  +T  MVL   +KW P
Sbjct: 98  FQALAKDTMFMVLLKGQKWKP 118

Induces apoptosis.

Mus musculus (taxid: 10090)

>sp|F1MN90|CIDEC_BOVIN Cell death activator CIDE-3 OS=Bos taurus GN=CIDEC PE=2 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%)

Query: 2   EEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDY 61
           E    RP ++    R  + G++  SLE++  K +D L        ++LE DGT ++ E+Y
Sbjct: 23  EAPRARPCRVTTADRSVRKGIMVHSLEDLHVKVRDTLMLAYKPFFLVLEEDGTTVETEEY 82

Query: 62  FCTLENNTTLMVLFDNEKWTP 82
           F +L ++T  MVL   +KW P
Sbjct: 83  FQSLADDTVFMVLHKGQKWQP 103

Binds to lipid droplets and regulates their enlargement, thereby restricting lipolysis and favoring storage. At focal contact sites between lipid droplets, promotes directional net neutral lipid transfer from the smaller to larger lipid droplets. The transfer direction may be driven by the internal pressure difference between the contacting lipid droplet pair. May act as a CEBPB coactivator in the white adipose tissue to control the expression of a subset of CEBPB downstream target genes, including SOCS1, SOCS3, TGFB1, TGFBR1, ID2 and XDH. When overexpressed in preadipocytes, induces apoptosis or increases cell susceptibility to apoptosis induced by serum deprivation or TGFB treatment. The physiological significance of its role in apoptosis is unclear.

Bos taurus (taxid: 9913)

>sp|O00273|DFFA_HUMAN DNA fragmentation factor subunit alpha OS=Homo sapiens GN=DFFA PE=1 SV=1

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 16/133 (12%)

Query: 13  DYKRERKVGVVASSLEEIKRKAQDKLS--NTSDNIKILLESDGTEIDEEDYFCTLENNTT 70
           +Y RE+  GV AS LE+++ KA D L+   +   + ++L  DGT +D++DYF  L +NT 
Sbjct: 26  NYSREQH-GVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTK 84

Query: 71  LMVLFDNEKWT-----------PVKQF-VDAVD-GSHHPLTQLLSLLQEDIGQLSLLGGQ 117
            + L  NEKW              + F VD  D G+      +   L+ED+  + LL  +
Sbjct: 85  FVALASNEKWAYNNSDGGTAWISQESFDVDETDSGAGLKWKNVARQLKEDLSSIILLSEE 144

Query: 118 ELELLSDMDPDNL 130
           +L++L D    +L
Sbjct: 145 DLQMLVDAPCSDL 157

Inhibitor of the caspase-activated DNase (DFF40).

Homo sapiens (taxid: 9606)

>sp|Q5XI33|CIDEC_RAT Cell death activator CIDE-3 OS=Rattus norvegicus GN=Cidec PE=2 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%)

Query: 2   EEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDY 61
           E    RP ++    R+ + G++A SLE++  K QD L        ++LE DGT ++ E+Y
Sbjct: 38  ETPRARPCRVSTADRKVRKGIMAHSLEDLLGKVQDILKLKDKPFSLVLEEDGTIVETEEY 97

Query: 62  FCTLENNTTLMVLFDNEKW 80
           F  L  +T  MVL   +KW
Sbjct: 98  FQALPRDTVFMVLQKGQKW 116

Binds to lipid droplets and regulates their enlargement, thereby restricting lipolysis and favoring storage. At focal contact sites between lipid droplets, promotes directional net neutral lipid transfer from the smaller to larger lipid droplets. The transfer direction may be driven by the internal pressure difference between the contacting lipid droplet pair. May act as a CEBPB coactivator in the white adipose tissue to control the expression of a subset of CEBPB downstream target genes, including SOCS1, SOCS3, TGFB1, TGFBR1, ID2 and XDH. When overexpressed in preadipocytes, induces apoptosis or increases cell susceptibility to apoptosis induced by serum deprivation or TGFB treatment. The physiological significance of its role in apoptosis is unclear.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
193627422	188	PREDICTED: DNA fragmentation factor subu	0.916	0.930	0.552	2e-45
168823417	197	cell death activator CIDE-B [Bombyx mori	0.973	0.944	0.46	4e-40
357628606	197	cell death activator CIDE-B [Danaus plex	0.958	0.928	0.463	1e-39
383851939	202	PREDICTED: DNA fragmentation factor subu	0.853	0.806	0.475	1e-39
307187665	202	Cell death activator CIDE-B [Camponotus	0.837	0.792	0.494	2e-39
322780815	203	hypothetical protein SINV_05579 [Solenop	0.837	0.788	0.469	1e-38
332026219	203	Cell death activator CIDE-B [Acromyrmex	0.837	0.788	0.475	7e-38
284155212	192	apoptosis-related protein lCAD [Bombyx m	0.910	0.906	0.470	1e-37
307193754	200	Cell death activator CIDE-B [Harpegnatho	0.837	0.8	0.469	9e-36
332376947	189	unknown [Dendroctonus ponderosae]	0.921	0.931	0.502	6e-34

>gi|193627422|ref|XP_001947580.1| PREDICTED: DNA fragmentation factor subunit alpha-like [Acyrthosiphon pisum]

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/181 (55%), Positives = 132/181 (72%), Gaps = 6/181 (3%)

Query: 2   EEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLS-NTSDNIKILLESDGTEIDEED 60
           EE S +PYKIID KRE K+G+VA+SL +   KAQ KL  N ++ IK++LESDGTEIDEED
Sbjct: 4   EEYSGKPYKIIDSKREHKIGIVATSLSDFMTKAQQKLDINENEPIKVVLESDGTEIDEED 63

Query: 61  YFCTLENNTTLMVLFDNEKWTP----VKQFVDAVDGSHHPLTQLLSLLQEDIGQLSLLGG 116
           YF TLE NT +M+L  ++KW+P     K   D +DG+   L  L+  LQ DIGQ++ L G
Sbjct: 64  YFDTLETNTLIMILKSDQKWSPYDISFKFADDQIDGTQ-SLNSLIRRLQNDIGQIAFLSG 122

Query: 117 QELELLSDMDPDNLLDIIPDKMFLNQVKEASCRFLSDKRNAQEALDLLKLYHKSYINNTN 176
            +LELLSDMDP++L+D+  D+ FL+QVKEAS RFL +KR AQ+A++LLKLYH S I   +
Sbjct: 123 CDLELLSDMDPESLVDLAFDRSFLDQVKEASGRFLYEKREAQDAINLLKLYHASTIGQNS 182

Query: 177 S 177
           +
Sbjct: 183 T 183

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|168823417|ref|NP_001108342.1| cell death activator CIDE-B [Bombyx mori] gi|163962995|gb|ABY50540.1| cell death activator CIDE-B [Bombyx mori]

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 92/200 (46%), Positives = 131/200 (65%), Gaps = 14/200 (7%)

Query: 1   MEEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED 60
           ME +  +PYKI D  RE+K G+VA SLE++  K  +KL   S+N+ ++LESDGTE+D+E+
Sbjct: 1   MENDINKPYKICDVNREKKKGIVAMSLEDLLIKVPEKLGMPSENLTVVLESDGTEVDDEE 60

Query: 61  YFCTLENNTTLMVLFDNEKWTP--------VKQFVDAVDGSHHPLTQLLSLLQEDIGQLS 112
           YF TL+ +T+LM+L  NEKW P        + Q  D   G    +  L+  LQ ++  +S
Sbjct: 61  YFSTLDPDTSLMILHGNEKWVPNMPKCQVSLDQTDDIALGDKEQVASLVGRLQHNLCHIS 120

Query: 113 LLGGQELELLSDMDPDNLLDIIPD---KMFLNQVKEASCRFLSDKRNAQEALDLLKLYHK 169
           LLGGQ+LELLSDMDPD+L DI+ D   ++ L  +KEAS R L ++R AQ+A++LLKLYH+
Sbjct: 121 LLGGQDLELLSDMDPDSLADIVTDRDNRIILEHIKEASGRILLEERQAQDAMELLKLYHQ 180

Query: 170 SYINNTNSNNDASQTKKTRL 189
           S    +N   D S  K+ R+
Sbjct: 181 SV---SNGPEDVSSPKQERV 197

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628606|gb|EHJ77878.1| cell death activator CIDE-B [Danaus plexippus]

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/194 (46%), Positives = 127/194 (65%), Gaps = 11/194 (5%)

Query: 1   MEEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED 60
           ME+   +PYKI D  RE+K G+VASSLE++  K  +KL    +N+ ++LE DGTE+D+E+
Sbjct: 1   MEDNINKPYKICDMNREKKKGIVASSLEDLIGKVPEKLGLPPENLTVVLECDGTEVDDEE 60

Query: 61  YFCTLENNTTLMVLFDNEKWTP----VKQFVDAVD----GSHHPLTQLLSLLQEDIGQLS 112
           YF TL+ +T LM+L  NEKW+P     +  +D  D    G    +  L+  LQ ++  +S
Sbjct: 61  YFSTLDPDTALMILHGNEKWSPNMPKCQVSLDQTDEVSLGEKGQVASLVGRLQHNLCHIS 120

Query: 113 LLGGQELELLSDMDPDNLLDIIPD---KMFLNQVKEASCRFLSDKRNAQEALDLLKLYHK 169
           LLGGQ+LELLSDMDPD+L DI+ D   ++ L  +KEAS R L +KR AQ+A++LLKLYH+
Sbjct: 121 LLGGQDLELLSDMDPDSLADIVTDRDNRIILEHIKEASGRILLEKRQAQDAMELLKLYHQ 180

Query: 170 SYINNTNSNNDASQ 183
           S  N     +  SQ
Sbjct: 181 SVANGAEDVSPPSQ 194

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851939|ref|XP_003701488.1| PREDICTED: DNA fragmentation factor subunit alpha-like [Megachile rotundata]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 122/183 (66%), Gaps = 20/183 (10%)

Query: 8   PYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSD-NIKILLESDGTEIDEEDYFCTLE 66
           PYKI+D+ RE++ G+ ASSL+E+   A+++LS   D  + I+LE DGTE+D+E+YF TLE
Sbjct: 14  PYKIVDHAREKRKGITASSLKELTSIARNRLSLPLDAELTIVLEQDGTEVDDEEYFATLE 73

Query: 67  NNTTLMVLFDNEKWTPVKQF-----------VDAVDGSHH--------PLTQLLSLLQED 107
            NT+LMVL+ ++KW                 VD V+G           P+  L+S L  D
Sbjct: 74  RNTSLMVLYGDQKWVAAGSSKAASRYIVVDDVDNVEGGQRDEIRRRRPPIEPLVSSLHGD 133

Query: 108 IGQLSLLGGQELELLSDMDPDNLLDIIPDKMFLNQVKEASCRFLSDKRNAQEALDLLKLY 167
              +SLLGG +LELLSDMDPD+L DI+PD++FL Q+KEAS RFL++KR AQE++ LL++Y
Sbjct: 134 PSHISLLGGNDLELLSDMDPDSLADIVPDRIFLEQLKEASGRFLAEKRQAQESMALLQMY 193

Query: 168 HKS 170
             S
Sbjct: 194 ASS 196

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187665|gb|EFN72637.1| Cell death activator CIDE-B [Camponotus floridanus]

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 123/180 (68%), Gaps = 20/180 (11%)

Query: 8   PYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSD-NIKILLESDGTEIDEEDYFCTLE 66
           PYKI+D+ RER+ G+ ASSL+E+   A+++L+   D ++ I+LE DGTE+D+E+YF TLE
Sbjct: 14  PYKIVDHTRERRKGITASSLKELTNIARNRLALPVDADLTIVLEQDGTEVDDEEYFATLE 73

Query: 67  NNTTLMVLFDNEKWTPVKQ--------FVDAVD--GSHH---------PLTQLLSLLQED 107
            NT+LMVL  ++KW  V           VD VD  GS           P+  L+S L  D
Sbjct: 74  KNTSLMVLHGDQKWIAVGSSKTASRYIVVDDVDAEGSSRTDKIRRRRTPIEPLVSSLHGD 133

Query: 108 IGQLSLLGGQELELLSDMDPDNLLDIIPDKMFLNQVKEASCRFLSDKRNAQEALDLLKLY 167
              +SLLGG +LELLSDMDPD+L DI+PD++FL Q+KEAS RFL++KR AQE++ LL++Y
Sbjct: 134 PSHISLLGGNDLELLSDMDPDSLADIVPDRLFLEQLKEASGRFLAEKRQAQESMALLQMY 193

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322780815|gb|EFZ10044.1| hypothetical protein SINV_05579 [Solenopsis invicta]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 119/181 (65%), Gaps = 21/181 (11%)

Query: 8   PYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSD-NIKILLESDGTEIDEEDYFCTLE 66
           PYKI+D+ RER+ G+ ASSL+E+   A+++LS   D ++ I+LE DGTE+D+E+YF TLE
Sbjct: 14  PYKIVDHTRERRKGITASSLKELINIARNRLSLPVDADLTIVLEQDGTEVDDEEYFATLE 73

Query: 67  NNTTLMVLFDNEKWTPV--------------------KQFVDAVDGSHHPLTQLLSLLQE 106
            NT+LMVL  ++KW                          VD +     P+  L+S L  
Sbjct: 74  RNTSLMVLHGDQKWIAAGGSKTASRYIVVDDMDNVDDASRVDKIRRRRTPIEPLVSSLHG 133

Query: 107 DIGQLSLLGGQELELLSDMDPDNLLDIIPDKMFLNQVKEASCRFLSDKRNAQEALDLLKL 166
           D   +SLLGG +LELLSDMDPD+L DI+PD++FL Q+KEAS RFL++KR AQE++ LL++
Sbjct: 134 DPSHISLLGGNDLELLSDMDPDSLADIVPDRLFLEQLKEASGRFLAEKRQAQESMALLQM 193

Query: 167 Y 167
           Y
Sbjct: 194 Y 194

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026219|gb|EGI66361.1| Cell death activator CIDE-B [Acromyrmex echinatior]

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 86/181 (47%), Positives = 119/181 (65%), Gaps = 21/181 (11%)

Query: 8   PYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSD-NIKILLESDGTEIDEEDYFCTLE 66
           PYKI+D+ RER+ G+ ASSL+E+   A+++L+   D ++ I+LE DGTE+D+E+YF TLE
Sbjct: 14  PYKIVDHTRERRKGITASSLKELTNVARNRLAFPVDADLTIVLEQDGTEVDDEEYFATLE 73

Query: 67  NNTTLMVLFDNEKWTPVKQ--------FVDAVDGSHHP------------LTQLLSLLQE 106
            NT+LMVL  ++KW  V           VD VD +               +  L+S L  
Sbjct: 74  RNTSLMVLHGDQKWAAVGSSKTASRCIVVDNVDNAEGGSKVDKIRRRRTLIEPLVSSLHS 133

Query: 107 DIGQLSLLGGQELELLSDMDPDNLLDIIPDKMFLNQVKEASCRFLSDKRNAQEALDLLKL 166
           D   +SLLGG ELE LSDMDPD+L DI+PD++FL Q+KEAS RFL +KR AQE++ LL++
Sbjct: 134 DPSHISLLGGTELETLSDMDPDSLGDIVPDRLFLEQLKEASGRFLVEKRQAQESMALLQM 193

Query: 167 Y 167
           Y
Sbjct: 194 Y 194

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|284155212|gb|ADB78701.1| apoptosis-related protein lCAD [Bombyx mori]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/185 (47%), Positives = 120/185 (64%), Gaps = 11/185 (5%)

Query: 1   MEEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED 60
           ME +  +PYKI D  RE+K G+VA SLE++  K  +KL   S+N+ ++LESDGTE+D+E+
Sbjct: 1   MENDINKPYKICDVNREKKKGIVAMSLEDLLIKVPEKLGMPSENLTVVLESDGTEVDDEE 60

Query: 61  YFCTLENNTTLMVLFDNEKWTP--------VKQFVDAVDGSHHPLTQLLSLLQEDIGQLS 112
           YF TL+ +T+LM+L  NEKW P        + Q  D        +  L+  LQ ++  +S
Sbjct: 61  YFSTLDPDTSLMILHGNEKWVPNMPKCQVSLDQTDDIALADKEQVASLVGRLQHNLCHIS 120

Query: 113 LLGGQELELLSDMDPDNLLDIIPD---KMFLNQVKEASCRFLSDKRNAQEALDLLKLYHK 169
           LLGGQ+LELLSDMDPD+L DI+ D   ++ L  +KEAS R L +KR AQE  + LKLYH+
Sbjct: 121 LLGGQDLELLSDMDPDSLADIVTDRDNRIILEHIKEASGRILLEKRQAQELWNCLKLYHQ 180

Query: 170 SYINN 174
           S  N 
Sbjct: 181 SVSNG 185

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193754|gb|EFN76436.1| Cell death activator CIDE-B [Harpegnathos saltator]

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 84/179 (46%), Positives = 117/179 (65%), Gaps = 19/179 (10%)

Query: 8   PYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSD-NIKILLESDGTEIDEEDYFCTLE 66
           PYKI+D+ RER+ G+ ASSL+E+   A+ +L+   D ++ I+LE DGTE+D+E+YF TLE
Sbjct: 14  PYKIVDHTRERRKGITASSLKELTNVARSRLAFPVDADLTIVLEQDGTEVDDEEYFATLE 73

Query: 67  NNTTLMVLFDNEKWTPVKQF----------VDAVDGSHHP--------LTQLLSLLQEDI 108
            NT+LMVL  ++KW  V             VD V+GS           +  L+S L  D 
Sbjct: 74  RNTSLMVLHGDQKWVAVGSKRASRYIVVDDVDNVEGSSRTDKIRQRTLIEPLVSSLHGDP 133

Query: 109 GQLSLLGGQELELLSDMDPDNLLDIIPDKMFLNQVKEASCRFLSDKRNAQEALDLLKLY 167
             +SLLG  +LELLSDMDPD+L DI+ DK+FL Q+KEAS RFL D+R  QE++ LL+++
Sbjct: 134 SHISLLGPHDLELLSDMDPDSLADIVSDKLFLEQLKEASGRFLVDRRQVQESMILLQMF 192

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376947|gb|AEE63613.1| unknown [Dendroctonus ponderosae]

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 96/191 (50%), Positives = 130/191 (68%), Gaps = 15/191 (7%)

Query: 1   MEEES----QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDN-IKILLESDGTE 55
           ME ES    Q+P+K+ ++ RE + GVVASSLE++  K Q+KL    DN   ++LE+DGTE
Sbjct: 1   MEAESPPKVQKPFKLCNHNREIRKGVVASSLEDLTSKVQEKLDVAVDNSFTVVLEADGTE 60

Query: 56  IDEEDYFCTLENNTTLMVLFDNEKWTPV-------KQFVDAVDGSHHPLTQLLSLLQEDI 108
           ID+E+YF TL+ NT+LM+L  N+KW P        K  VDA  G    L  L+  L+ ++
Sbjct: 61  IDDEEYFATLDPNTSLMILNGNQKWLPAYPTCNLSKDQVDAAKGDE--LAGLVGRLKTNL 118

Query: 109 GQLSLLGGQELELLSDMDPDNLLDII-PDKMFLNQVKEASCRFLSDKRNAQEALDLLKLY 167
             LSLLGG ELELLSDMDPD+L D+  PDK+FL+Q+KEAS RFL +KR AQ+A+DLL+LY
Sbjct: 119 CHLSLLGGPELELLSDMDPDSLADLTYPDKIFLDQLKEASGRFLCEKRQAQDAMDLLRLY 178

Query: 168 HKSYINNTNSN 178
            +     + +N
Sbjct: 179 QEKEAAESEAN 189

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
FB|FBgn0024732	299	Drep-1 "DNA fragmentation fact	0.439	0.280	0.440	9e-23
UNIPROTKB|E2RQL5	219	CIDEA "Uncharacterized protein	0.455	0.397	0.390	1.3e-13
UNIPROTKB|G3N0M6	110	LOC100336584 "Uncharacterized	0.397	0.690	0.447	2.1e-13
MGI|MGI:1270845	217	Cidea "cell death-inducing DNA	0.424	0.373	0.407	2.1e-13
RGD|1305106	215	Cidea "cell death-inducing DFF	0.424	0.376	0.407	3.4e-13
UNIPROTKB|I3LED4	219	LOC100737011 "Uncharacterized	0.434	0.378	0.397	1.2e-12
FB|FBgn0028408	549	Drep-2 "DNA fragmentation fact	0.429	0.149	0.421	2.5e-12
UNIPROTKB|O60543	219	CIDEA "Cell death activator CI	0.424	0.369	0.395	3.9e-12
UNIPROTKB|Q9UHD4	219	CIDEB "Cell death activator CI	0.424	0.369	0.378	1e-11
MGI|MGI:1270844	219	Cideb "cell death-inducing DNA	0.397	0.347	0.402	1.3e-11

FB|FBgn0024732 Drep-1 "DNA fragmentation factor-related protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 9.0e-23, Sum P(2) = 9.0e-23
 Identities = 37/84 (44%), Positives = 51/84 (60%)

Query:     4 ESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFC 63
             +S++P+K+ D  R  K  V ASSLEEI+ K  +K         I L+SDGTEID+E+YF 
Sbjct:     9 DSKKPFKVKDVTRNIKKAVCASSLEEIRSKVAEKFEKCDHLPTIHLDSDGTEIDDEEYFR 68

Query:    64 TLENNTTLMVLFDNEKWTPVKQFV 87
             TL+ NT L+ +F  E W     +V
Sbjct:    69 TLDENTELVAVFPGEHWIDPTHYV 92

GO:0042981 "regulation of apoptotic process" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=IGI

GO:0006309 "apoptotic DNA fragmentation" evidence=NAS

GO:0005622 "intracellular" evidence=IEA

GO:0045476 "nurse cell apoptotic process" evidence=IMP

UNIPROTKB|E2RQL5 CIDEA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 34/87 (39%), Positives = 55/87 (63%)

Query:     3 EESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYF 62
             + S RP+++ ++ R  + GV+A SL+E+  K  + L  TS  + ++LE DGT +D ED+F
Sbjct:    31 KHSARPFRVSNHDRSSRRGVMADSLKELLSKTLEALVITSGLVTLVLEEDGTVVDTEDFF 90

Query:    63 CTLENNTTLMVLFDNEKWTPVKQFVDA 89
              TL +NT  M+L + +KWTP   +  A
Sbjct:    91 QTLGDNTHFMILEEGQKWTPGANYTPA 117

GO:0050995 "negative regulation of lipid catabolic process" evidence=IEA

GO:0050710 "negative regulation of cytokine secretion" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0035634 "response to stilbenoid" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0019915 "lipid storage" evidence=IEA

GO:0010890 "positive regulation of sequestering of triglyceride" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006309 "apoptotic DNA fragmentation" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001659 "temperature homeostasis" evidence=IEA

UNIPROTKB|G3N0M6 LOC100336584 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 34/76 (44%), Positives = 51/76 (67%)

Query:     7 RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
             RP+++ ++ R  + GV+ASSL+E+  K  D L   S  + ++LE DGT +D E++F TL 
Sbjct:    35 RPFRVSNHDRSSRRGVMASSLQELLSKTLDALVVASQLVTLVLEEDGTVVDTEEFFQTLG 94

Query:    67 NNTTLMVLFDNEKWTP 82
             +NT LMVL   +KWTP
Sbjct:    95 DNTHLMVLEQGQKWTP 110

GO:0050995 "negative regulation of lipid catabolic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0035634 "response to stilbenoid" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0019915 "lipid storage" evidence=IEA

GO:0010890 "positive regulation of sequestering of triglyceride" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006309 "apoptotic DNA fragmentation" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001659 "temperature homeostasis" evidence=IEA

MGI|MGI:1270845 Cidea "cell death-inducing DNA fragmentation factor, alpha subunit-like effector A" [Mus musculus (taxid:10090)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 33/81 (40%), Positives = 54/81 (66%)

Query:     7 RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
             RP+++ ++ R  + GV+ASSL+E+  K  D L  T+  + ++LE DGT +D E++F TL 
Sbjct:    35 RPFRVSNHDRSSRRGVMASSLQELISKTLDVLVITTGLVTLVLEEDGTVVDTEEFFQTLR 94

Query:    67 NNTTLMVLFDNEKWTPVKQFV 87
             +NT  M+L   +KWTP  ++V
Sbjct:    95 DNTHFMILEKGQKWTPGSKYV 115

GO:0001659 "temperature homeostasis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005740 "mitochondrial envelope" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0006309 "apoptotic DNA fragmentation" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0006915 "apoptotic process" evidence=IDA

GO:0008219 "cell death" evidence=IDA

GO:0010890 "positive regulation of sequestering of triglyceride" evidence=IDA

GO:0019915 "lipid storage" evidence=IMP

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IDA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0050710 "negative regulation of cytokine secretion" evidence=ISO

GO:0050995 "negative regulation of lipid catabolic process" evidence=ISO;IMP

RGD|1305106 Cidea "cell death-inducing DFFA-like effector a" [Rattus norvegicus (taxid:10116)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 33/81 (40%), Positives = 53/81 (65%)

Query:     7 RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
             RP+++ ++ R  + GV+ASSL E+  K  D L  T+  + ++LE DGT +D E++F TL 
Sbjct:    35 RPFRVSNHDRSSRRGVMASSLRELISKTLDVLVITTGLVTLVLEEDGTVVDTEEFFQTLR 94

Query:    67 NNTTLMVLFDNEKWTPVKQFV 87
             +NT  M+L   +KWTP  ++V
Sbjct:    95 DNTHFMILEKGQKWTPGNKYV 115

GO:0001659 "temperature homeostasis" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005740 "mitochondrial envelope" evidence=IEA;ISO

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0006309 "apoptotic DNA fragmentation" evidence=IEA;ISO

GO:0006629 "lipid metabolic process" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008219 "cell death" evidence=ISO

GO:0010890 "positive regulation of sequestering of triglyceride" evidence=IEA;ISO

GO:0019915 "lipid storage" evidence=IEA;ISO

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA;ISO

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA;ISO

GO:0035634 "response to stilbenoid" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043066 "negative regulation of apoptotic process" evidence=IEA;ISO

GO:0050710 "negative regulation of cytokine secretion" evidence=IEA;ISO

GO:0050995 "negative regulation of lipid catabolic process" evidence=IEA;ISO

UNIPROTKB|I3LED4 LOC100737011 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 33/83 (39%), Positives = 51/83 (61%)

Query:     7 RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
             RP+++ ++ R  + GV ASSL+E+  K  D L   S  + ++LE DGT +D E++F  L 
Sbjct:    35 RPFRVSNHNRSSRRGVTASSLQELLSKTLDALVIASRVVTLVLEEDGTVVDTEEFFQMLG 94

Query:    67 NNTTLMVLFDNEKWTPVKQFVDA 89
             +NT  MVL   +KWTP   ++ A
Sbjct:    95 DNTHFMVLEKGQKWTPAGTYIPA 117

GO:0006915 "apoptotic process" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

FB|FBgn0028408 Drep-2 "DNA fragmentation factor-related protein 2" [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 35/83 (42%), Positives = 53/83 (63%)

Query:     1 MEEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLS-NTSDNIKILLESDGTEIDEE 59
             ME   +RP KI D  R  + GVV  + EE+  + +DKL    S+ ++++LE DGT+I++ 
Sbjct:    71 MESRGKRPLKIWDSWRNVRKGVVVGTFEELLVRGKDKLGVPASEPVRVVLECDGTQIEDG 130

Query:    60 DYFCTLENNTTLMVLFDNEKWTP 82
             +YF TL NNT L++L   E+W P
Sbjct:   131 EYFRTLANNTVLLLLRQGERWYP 153

GO:0006915 "apoptotic process" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

GO:1901215 "negative regulation of neuron death" evidence=IGI

UNIPROTKB|O60543 CIDEA "Cell death activator CIDE-A" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 32/81 (39%), Positives = 51/81 (62%)

Query:     7 RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
             RP+++ ++ R  + GV+ASSL+E+  K  D L   +  + ++LE DGT +D E++F TL 
Sbjct:    35 RPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLG 94

Query:    67 NNTTLMVLFDNEKWTPVKQFV 87
             +NT  M+L   +KW P  Q V
Sbjct:    95 DNTHFMILEKGQKWMPGSQHV 115

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0035634 "response to stilbenoid" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=TAS

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IMP

GO:0050710 "negative regulation of cytokine secretion" evidence=IMP

GO:0050995 "negative regulation of lipid catabolic process" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0008219 "cell death" evidence=ISS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0006309 "apoptotic DNA fragmentation" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0001659 "temperature homeostasis" evidence=ISS

GO:0019915 "lipid storage" evidence=ISS

GO:0006629 "lipid metabolic process" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005740 "mitochondrial envelope" evidence=ISS

GO:0005811 "lipid particle" evidence=IDA

GO:0010890 "positive regulation of sequestering of triglyceride" evidence=ISS

UNIPROTKB|Q9UHD4 CIDEB "Cell death activator CIDE-B" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 31/82 (37%), Positives = 53/82 (64%)

Query:     6 QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL 65
             QRP+++ D+KR  + G+ A++ +E+  KA + L   +  + ++LE DGT +D ED+F  L
Sbjct:    35 QRPFRVCDHKRTIRKGLTAATRQELLAKALETLL-LNGVLTLVLEEDGTAVDSEDFFQLL 93

Query:    66 ENNTTLMVLFDNEKWTPVKQFV 87
             E++T LMVL   + W+P +  V
Sbjct:    94 EDDTCLMVLQSGQSWSPTRSGV 115

GO:0005829 "cytosol" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=TAS

MGI|MGI:1270844 Cideb "cell death-inducing DNA fragmentation factor, alpha subunit-like effector B" [Mus musculus (taxid:10090)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 31/77 (40%), Positives = 50/77 (64%)

Query:     6 QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL 65
             QRP+++ D+KR  + G+ A+SL+E+  K  + L      + ++LE DGT +D ED+F  L
Sbjct:    35 QRPFRVCDHKRTVRKGLTAASLQELLDKVLETLL-LRGVLTLVLEEDGTAVDSEDFFQLL 93

Query:    66 ENNTTLMVLFDNEKWTP 82
             E++T LMVL   + W+P
Sbjct:    94 EDDTCLMVLEQGQSWSP 110

GO:0005622 "intracellular" evidence=IEA

GO:0005829 "cytosol" evidence=ISA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	191
cd01615	78	cd01615, CIDE_N, CIDE_N domain, found at the N-ter	3e-33
smart00266	74	smart00266, CAD, Domains present in proteins impli	7e-23
pfam02017	78	pfam02017, CIDE-N, CIDE-N domain	9e-23
cd06539	78	cd06539, CIDE_N_A, CIDE_N domain of CIDE-A protein	3e-18
cd06536	80	cd06536, CIDE_N_ICAD, CIDE_N domain of ICAD	7e-16
cd06537	81	cd06537, CIDE_N_B, CIDE_N domain of CIDE-B protein	3e-15
cd06538	79	cd06538, CIDE_N_FSP27, CIDE_N domain of FSP27 prot	9e-15
cd06535	77	cd06535, CIDE_N_CAD, CIDE_N domain of CAD nuclease	1e-10

>gnl|CDD|119367 cd01615, CIDE_N, CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45)

 Score =  113 bits (285), Expect = 3e-33
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 6  QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL 65
           RP+K+ D  R RK GV ASSLEE+  KA +KL   S  + ++LE DGTE+D+E+YF TL
Sbjct: 2  LRPFKVCDSDRSRKKGVAASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTL 61

Query: 66 ENNTTLMVLFDNEKWTP 82
           +NT LM+L   +KWTP
Sbjct: 62 PDNTVLMLLEPGQKWTP 78

These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein. Length = 78

>gnl|CDD|128562 smart00266, CAD, Domains present in proteins implicated in post-mortem DNA fragmentation

 Score = 86.6 bits (215), Expect = 7e-23
 Identities = 36/74 (48%), Positives = 49/74 (66%)

Query: 7  RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
          RP+K+ D+ R  + GV ASSLEE+  K  DKL+     + ++LE DGT +D+E+YF TL 
Sbjct: 1  RPFKVRDHDRNVRKGVAASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTLP 60

Query: 67 NNTTLMVLFDNEKW 80
          +NT LM L   EKW
Sbjct: 61 DNTELMALEKGEKW 74

Length = 74

>gnl|CDD|202090 pfam02017, CIDE-N, CIDE-N domain

 Score = 86.6 bits (215), Expect = 9e-23
 Identities = 35/78 (44%), Positives = 48/78 (61%)

Query: 5  SQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCT 64
            +P+K+ D+ R  K GV ASSL+E+  K  D L      + ++LE DGTE+D EDYF T
Sbjct: 1  PPKPFKVRDHDRRIKKGVAASSLQELLSKVCDILQLPDGLVTLVLEEDGTEVDTEDYFQT 60

Query: 65 LENNTTLMVLFDNEKWTP 82
          L +NT L+ L   +KW P
Sbjct: 61 LPDNTELVALTSGQKWAP 78

This domain is found in CAD nuclease, and ICAD, the inhibitor of CAD nuclease. The two proteins interact through this domain. Length = 78

>gnl|CDD|119372 cd06539, CIDE_N_A, CIDE_N domain of CIDE-A proteins

 Score = 74.6 bits (183), Expect = 3e-18
 Identities = 34/77 (44%), Positives = 51/77 (66%)

Query: 6  QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL 65
           RP+++ ++ R  + GV+ASSL+E+  K  D L  TS  + ++LE DGT +D E++F TL
Sbjct: 2  ARPFRVSNHDRSSRRGVMASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTL 61

Query: 66 ENNTTLMVLFDNEKWTP 82
           +NT  MVL   +KWTP
Sbjct: 62 GDNTHFMVLEKGQKWTP 78

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance. Length = 78

>gnl|CDD|119369 cd06536, CIDE_N_ICAD, CIDE_N domain of ICAD

 Score = 68.7 bits (168), Expect = 7e-16
 Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)

Query: 6  QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLS--NTSDNIKILLESDGTEIDEEDYFC 63
           +P  + +  R+++ GV ASSLEE++ KA + L   ++S  I ++L  DGT +++EDYF 
Sbjct: 2  LKPCVVCNVSRQKQHGVAASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFL 61

Query: 64 TLENNTTLMVLFDNEKWTP 82
           L  NT  ++L +NEKW P
Sbjct: 62 CLPPNTKFVLLAENEKWAP 80

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease. Length = 80

>gnl|CDD|119370 cd06537, CIDE_N_B, CIDE_N domain of CIDE-B proteins

 Score = 67.2 bits (164), Expect = 3e-15
 Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 6  QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL 65
          QRP+++ D+KR  + G+ A+SL+E+  KA + L   S  + ++LE DGT +D ED+F  L
Sbjct: 2  QRPFRVCDHKRTVRKGLTAASLQELLAKALETLL-LSGVLTLVLEEDGTAVDSEDFFELL 60

Query: 66 ENNTTLMVLFDNEKWTPVK 84
          E++T LMVL   + W+P  
Sbjct: 61 EDDTCLMVLEQGQSWSPKS 79

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance. Length = 81

>gnl|CDD|119371 cd06538, CIDE_N_FSP27, CIDE_N domain of FSP27 proteins

 Score = 66.0 bits (161), Expect = 9e-15
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 7  RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
          RP+++ +  R  + G++A SLE++  K  D L        ++L+ DGT +D E++F  L 
Sbjct: 3  RPFRVSNADRSLRKGIMADSLEDLLNKVLDAL-LLDCISSLVLDEDGTGVDTEEFFQALA 61

Query: 67 NNTTLMVLFDNEKWTP 82
          +NT  MVL   +KW P
Sbjct: 62 DNTVFMVLGKGQKWKP 77

The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed. Length = 79

>gnl|CDD|119368 cd06535, CIDE_N_CAD, CIDE_N domain of CAD nuclease

 Score = 55.1 bits (133), Expect = 1e-10
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 7  RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
          +  KI      +K GV A +L+E+ RK    L       ++ L  DGTE+  E+YF TL 
Sbjct: 3  KCVKIRSLNSAQKYGVAAKNLKELLRKGCRLLQLPCAGSRLCLYEDGTEV-TEEYFPTLP 61

Query: 67 NNTTLMVLFDNEKW 80
          +NT L++L   + W
Sbjct: 62 DNTELVLLTPGQSW 75

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease. Length = 77

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	191
2eel_A	91	Solution Structure Of The Cide-N Domain Of Human Ce		1e-12
1d4b_A	122	Cide-N Domain Of Human Cide-B Length = 122		6e-12
1f2r_I	100	Nmr Structure Of The Heterodimeric Complex Between		1e-08
1ibx_B	145	Nmr Structure Of Dff40 And Dff45 N-Terminal Domain		7e-08
1ibx_A	86	Nmr Structure Of Dff40 And Dff45 N-Terminal Domain		2e-04

>pdb|2EEL|A Chain A, Solution Structure Of The Cide-N Domain Of Human Cell Death Activator Cide-A Length = 91

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 7  RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
          RP+++ ++ R  + GV+ASSL+E+  K  D L   +  + ++LE DGT +D E++F TL 
Sbjct: 10 RPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLG 69
Query: 67 NNTTLMVLFDNEKWTP 82
          +NT  M+L   +KW P
Sbjct: 70 DNTHFMILEKGQKWMP 85

>pdb|1D4B|A Chain A, Cide-N Domain Of Human Cide-B Length = 122

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 6   QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL 65
           QRP+++ D+KR  + G+ A++ +E+  KA + L   +  + ++LE DGT +D ED+F  L
Sbjct: 35  QRPFRVCDHKRTIRKGLTAATRQELLAKALETLL-LNGVLTLVLEEDGTAVDSEDFFQLL 93
Query: 66  ENNTTLMVLFDNEKWTPVKQFV 87
           E++T LMVL   + W+P +  V
Sbjct: 94  EDDTCLMVLQSGQSWSPTRSGV 115

>pdb|1F2R|I Chain I, Nmr Structure Of The Heterodimeric Complex Between Cad Domains Of Cad And Icad Length = 100

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 7  RPYKIIDYKRER---KVGVVASSLEEIKRKAQDKLS--NTSDNIKILLESDGTEIDEEDY 61
          RP K    +R     + GV ASSLEE++ KA + L+   +   I ++L  DGT +D++DY
Sbjct: 16 RPLKPCLLRRNHSRDQHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDY 75
Query: 62 FCTLENNTTLMVLFDNEKWT 81
          F  L +NT  + L  NEKWT
Sbjct: 76 FLCLPSNTKFVALACNEKWT 95

>pdb|1IBX|B Chain B, Nmr Structure Of Dff40 And Dff45 N-Terminal Domain Complex Length = 145

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 13  DYKRERKVGVVASSLEEIKRKAQDKLS--NTSDNIKILLESDGTEIDEEDYFCTLENNTT 70
           +Y RE+  GV AS LE+++ KA D L+   +   + ++L  DGT +D++DYF  L +NT 
Sbjct: 71  NYSREQH-GVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTK 129
Query: 71  LMVLFDNEKW 80
            + L  NEKW
Sbjct: 130 FVALASNEKW 139

>pdb|1IBX|A Chain A, Nmr Structure Of Dff40 And Dff45 N-Terminal Domain Complex Length = 86

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 10 KIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNT 69
          K+   +  RK GV   S +E+ RK   +        ++ L  DGTE+  EDYF ++ +N 
Sbjct: 9  KLRALRSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTELT-EDYFPSVPDNA 67
Query: 70 TLMVLFDNEKW 80
           L++L   + W
Sbjct: 68 ELVLLTLGQAW 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
2eel_A	91	Cell death activator CIDE-A; CIDE-N domain, cell d	9e-30
1d4b_A	122	CIDE B, human cell death-inducing effector B; alph	9e-29
1f2r_I	100	Inhibitor of caspase-activated DNAse; alpha-beta r	8e-27
1v0d_A	329	DNA fragmentation factor 40 kDa subunit; hydrolase	9e-25
1ibx_B	145	Chimera of IGG binding protein G and DNA fragmenta	2e-23

>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score =  104 bits (260), Expect = 9e-30
 Identities = 30/84 (35%), Positives = 49/84 (58%)

Query: 2  EEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDY 61
               RP+++ ++ R  + GV+ASSL+E+  K  D L   +  + ++LE DGT +D E++
Sbjct: 5  SSGPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEF 64

Query: 62 FCTLENNTTLMVLFDNEKWTPVKQ 85
          F TL +NT  M+L   +KW P   
Sbjct: 65 FQTLGDNTHFMILEKGQKWMPSGP 88

>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1 Length = 122

 Score =  102 bits (256), Expect = 9e-29
 Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 2   EEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDY 61
               QRP+++ D+KR  + G+ A++ +E+  KA + L   +  + ++LE DGT +D ED+
Sbjct: 31  APPPQRPFRVCDHKRTIRKGLTAATRQELLAKALETL-LLNGVLTLVLEEDGTAVDSEDF 89

Query: 62  FCTLENNTTLMVLFDNEKWTPVKQFVDAVDGSHH 95
           F  LE++T LMVL   + W+P +     +   HH
Sbjct: 90  FQLLEDDTCLMVLQSGQSWSPTR--SGVLHHHHH 121

>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1 Length = 100

 Score = 96.9 bits (241), Expect = 8e-27
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 7  RPYKIIDYKRERKVGVVASSLEEIKRKAQDKL--SNTSDNIKILLESDGTEIDEEDYFCT 64
          +P  +       + GV ASSLEE++ KA + L    +   I ++L  DGT +D++DYF  
Sbjct: 19 KPCLLRRNHSRDQHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLC 78

Query: 65 LENNTTLMVLFDNEKWTP 82
          L +NT  + L  NEKWT 
Sbjct: 79 LPSNTKFVALACNEKWTY 96

>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} SCOP: d.4.1.7 PDB: 1f2r_C 1c9f_A 1ibx_A* Length = 329

 Score = 97.4 bits (242), Expect = 9e-25
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 7  RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
          +  K+       K GV A S +E+ RK   +        ++ L  DGTE+  +D F  L 
Sbjct: 9  KCVKLRALHSACKFGVAARSCQELLRKGCVRFQLPMPGSRLCLYEDGTEVT-DDCFPGLP 67

Query: 67 NNTTLMVLFDNEKWTPVKQFVDAV 90
          N+  L++L   E W      +   
Sbjct: 68 NDAELLLLTAGETWHGYVSDITRF 91

>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1 Length = 145

 Score = 89.9 bits (222), Expect = 2e-23
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 2   EEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKL--SNTSDNIKILLESDGTEIDEE 59
           E  + +P  +       + GV AS LE+++ KA D L    +   + ++L  DGT +D++
Sbjct: 59  EIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDD 118

Query: 60  DYFCTLENNTTLMVLFDNEKWTP 82
           DYF  L +NT  + L  NEKW  
Sbjct: 119 DYFLCLPSNTKFVALASNEKWAY 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
2eel_A	91	Cell death activator CIDE-A; CIDE-N domain, cell d	100.0
1d4b_A	122	CIDE B, human cell death-inducing effector B; alph	100.0
1f2r_I	100	Inhibitor of caspase-activated DNAse; alpha-beta r	100.0
1ibx_B	145	Chimera of IGG binding protein G and DNA fragmenta	100.0
1v0d_A	329	DNA fragmentation factor 40 kDa subunit; hydrolase	99.95
1iyr_A	111	DFF45, DNA fragmentation factor alpha subunit; apo	91.78

>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=234.46  Aligned_cols=82  Identities=37%  Similarity=0.653  Sum_probs=79.1

Q ss_pred             CCCCCCeEEecCCCceEeeeecCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcccCCCCeeEeeecCCCcccc
Q psy14653          3 EESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTP   82 (191)
Q Consensus         3 ~~~~KPfKV~n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~gekW~p   82 (191)
                      ++++|||||||++|++||||+|+||+||+.|||++|+|+..+++||||||||+|||||||+|||+||+||+|.+||+|+|
T Consensus         6 ~~~~kpfkV~~~~Rs~k~GV~A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp~nT~lmvL~~ge~W~p   85 (91)
T 2eel_A            6 SGPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQKWMP   85 (91)
T ss_dssp             SSCCEEEEEECTTSCCCEEEEESSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSCSSEEEEEEETTCCCCC
T ss_pred             CCCCCCEEEecCCCCeEEeEEcCCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCCCCCEEEEEcCCCccCC
Confidence            57889999999999999999999999999999999999877999999999999999999999999999999999999999


Q ss_pred             cC
Q psy14653         83 VK   84 (191)
Q Consensus        83 ~~   84 (191)
                      ..
T Consensus        86 ~~   87 (91)
T 2eel_A           86 SG   87 (91)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1

Probab=100.00  E-value=5.8e-36  Score=235.86  Aligned_cols=83  Identities=36%  Similarity=0.637  Sum_probs=79.0

Q ss_pred             CCCCCCeEEecCCCceEeeeecCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcccCCCCeeEeeecCCCcccc
Q psy14653          3 EESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTP   82 (191)
Q Consensus         3 ~~~~KPfKV~n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~gekW~p   82 (191)
                      ++++|||||||++|++||||+|+||+||+.|||++|+++ .+++||||||||+|||||||+|||+||+||+|++||+|.|
T Consensus        32 ~~~~kPfKV~~~~Rs~k~GV~A~SL~EL~~K~~~~l~l~-~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~~gq~W~p  110 (122)
T 1d4b_A           32 PPPQRPFRVCDHKRTIRKGLTAATRQELLAKALETLLLN-GVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSP  110 (122)
T ss_dssp             SCCCEEEEEECSSSSCEEEEEECCSSTHHHHHHHHHSCC-SSCEEEETTTTEEECSTHHHHHSSSCCCCCEECSSCCCCC
T ss_pred             CCCCCCEEEecCCCCeEEeEEcCCHHHHHHHHHHHhccC-CCcEEEEEeCCcEEechhHhhcCCCCCEEEEecCCCcccC
Confidence            577899999999999999999999999999999999995 6999999999999999999999999999999999999999


Q ss_pred             cCCc
Q psy14653         83 VKQF   86 (191)
Q Consensus        83 ~~~~   86 (191)
                      +...
T Consensus       111 ~~~~  114 (122)
T 1d4b_A          111 TRSG  114 (122)
T ss_dssp             CCCS
T ss_pred             CCcc
Confidence            7643

>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1

Probab=100.00  E-value=1.5e-35  Score=226.78  Aligned_cols=82  Identities=38%  Similarity=0.586  Sum_probs=75.9

Q ss_pred             CCCCCCCeEEe-cCCCceEeeeecCcHHHHHHHHHhhhCCCC--CceeEEEccCCceeccchhcccCCCCeeEeeecCCC
Q psy14653          2 EEESQRPYKII-DYKRERKVGVVASSLEEIKRKAQDKLSNTS--DNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNE   78 (191)
Q Consensus         2 ~~~~~KPfKV~-n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~--~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge   78 (191)
                      +.+++|||||| |++|+ ||||+|+||+||+.|||++|+|+.  .+++|||++|||+|||||||+|||+||+||+|++||
T Consensus        14 ~~~~~kPfkV~~~~~r~-k~GV~A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~~ge   92 (100)
T 1f2r_I           14 DVRPLKPCLLRRNHSRD-QHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTKFVALACNE   92 (100)
T ss_dssp             TSCCCEEEEEEETTEEE-EEEEEESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSCSCCEEEEECSSS
T ss_pred             cCCCCCCEEEeeCCCcc-EEeEEcCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCCCCCEEEEEcCCC
Confidence            46788999999 66665 999999999999999999999975  369999999999999999999999999999999999


Q ss_pred             cccccC
Q psy14653         79 KWTPVK   84 (191)
Q Consensus        79 kW~p~~   84 (191)
                      +|.|..
T Consensus        93 ~W~p~~   98 (100)
T 1f2r_I           93 KWTYND   98 (100)
T ss_dssp             CCSCTT
T ss_pred             ccCCCC
Confidence            999975

>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1

Probab=100.00  E-value=6.3e-35  Score=235.42  Aligned_cols=83  Identities=34%  Similarity=0.544  Sum_probs=79.4

Q ss_pred             CCCCCCCeEEecCCCceEeeeecCcHHHHHHHHHhhhCCCCC--ceeEEEccCCceeccchhcccCCCCeeEeeecCCCc
Q psy14653          2 EEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSD--NIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEK   79 (191)
Q Consensus         2 ~~~~~KPfKV~n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~~--~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~gek   79 (191)
                      |.+++|||||||++|++||||+|+||+||+.|||++|+|+.+  +++|||++|||+|||||||+|||+||+||+|.+||+
T Consensus        59 E~~~~KPfKV~d~~Rs~KkGV~A~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp~nT~LmvL~~gek  138 (145)
T 1ibx_B           59 EIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVALASNEK  138 (145)
T ss_dssp             SCSSCCCCBCBCSSCCSBCCCCCSSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSCSSCBEEEECSSCC
T ss_pred             cccCCccEEEecCCCCeEEeEEcCCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCCCCCEEEEECCCCc
Confidence            467899999999999999999999999999999999999764  999999999999999999999999999999999999


Q ss_pred             ccccC
Q psy14653         80 WTPVK   84 (191)
Q Consensus        80 W~p~~   84 (191)
                      |.|+.
T Consensus       139 W~p~~  143 (145)
T 1ibx_B          139 WAYNN  143 (145)
T ss_dssp             CCCCC
T ss_pred             cCCCC
Confidence            99975

>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} SCOP: d.4.1.7 PDB: 1f2r_C 1c9f_A 1ibx_A*

Probab=99.95  E-value=1.3e-30  Score=232.46  Aligned_cols=82  Identities=27%  Similarity=0.364  Sum_probs=1.6

Q ss_pred             CCCCCeEEecCCCceEeeeecCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcccCCCCeeEeeecCCCccccc
Q psy14653          4 ESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTPV   83 (191)
Q Consensus         4 ~~~KPfKV~n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~gekW~p~   83 (191)
                      +++|||||||++|++||||||+||+||+.|||++|+++..+++|||++|||+| |||||+|||+||+||+|.+||+|.|.
T Consensus         6 ~~~rPfKV~d~~Rs~kkGV~A~SL~EL~~K~~~kl~l~~~~~~LvLeeDGTeV-dEeYF~tLp~nT~LmvL~~gq~W~~~   84 (329)
T 1v0d_A            6 RQPKCVKLRALHSACKFGVAARSCQELLRKGCVRFQLPMPGSRLCLYEDGTEV-TDDCFPGLPNDAELLLLTAGETWHGY   84 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCeEEecCCCCccccEEcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEe-eHHHHhcCCCCCEEEEecCCCccccC
Confidence            57899999999999999999999999999999999998789999999999999 99999999999999999999999997


Q ss_pred             CCc
Q psy14653         84 KQF   86 (191)
Q Consensus        84 ~~~   86 (191)
                      ..+
T Consensus        85 ~sD   87 (329)
T 1v0d_A           85 VSD   87 (329)
T ss_dssp             CTT
T ss_pred             cch
Confidence            644

>1iyr_A DFF45, DNA fragmentation factor alpha subunit; apoptosis, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; NMR {Homo sapiens} SCOP: a.164.1.1 PDB: 1koy_A*

Probab=91.78  E-value=0.12  Score=39.87  Aligned_cols=68  Identities=28%  Similarity=0.316  Sum_probs=58.2

Q ss_pred             hHHHHHHHhcccccccccCccchhhhcCCCcchHHhhcc-chHHHHHHHHHHhhHhhhHHHHHHHHHHH
Q psy14653         97 LTQLLSLLQEDIGQLSLLGGQELELLSDMDPDNLLDIIP-DKMFLNQVKEASCRFLSDKRNAQEALDLL  164 (191)
Q Consensus        97 ~~~l~~qL~~dl~~i~llse~dLq~L~d~~~~~La~~~~-~~~~~~~lqet~~r~L~~r~earqs~~LL  164 (191)
                      --.+..-||+-..--..||-+|||+...=+|.-||..|+ +..+.+.||.+|.+-|..|-|.=||..=|
T Consensus        18 sS~iL~~LKeK~aPElsLSsqdLElV~kedpkALa~aL~Wd~~kt~avqqAC~qELs~RlQQVQsL~SL   86 (111)
T 1iyr_A           18 ASHILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQTQSLHSL   86 (111)
T ss_dssp             CHHHHHHHHTTCCTTTTSCHHHHHHHHTSCHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHGGGCCCSCC
T ss_pred             HHHHHHHHccCCCccccccHHHHHHHHccCHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667789888888889999999999999999999996 57888999999999999998877765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	191
d1d4ba_	122	d.15.2.1 (A:) Cell death-inducing effector B (CIDE	6e-30
d1ibxa_	81	d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40	2e-27
d1c9fa_	87	d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40	2e-27
d1f2ri_	100	d.15.2.1 (I:) Inhibitor of caspase-activated DNase	9e-26

>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Cell death-inducing effector B (CIDE-B), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 6e-30
 Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 6   QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL 65
           QRP+++ D+KR  + G+ A++ +E+  KA + L   +  + ++LE DGT +D ED+F  L
Sbjct: 35  QRPFRVCDHKRTIRKGLTAATRQELLAKALETL-LLNGVLTLVLEEDGTAVDSEDFFQLL 93

Query: 66  ENNTTLMVLFDNEKWTPVK 84
           E++T LMVL   + W+P +
Sbjct: 94  EDDTCLMVLQSGQSWSPTR 112

>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Caspase-activated DNase (CAD), DFF40, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.1 bits (242), Expect = 2e-27
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 7  RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
          +  K+   +  RK GV   S +E+ RK   +        ++ L  DGTE+  EDYF ++ 
Sbjct: 6  KSVKLRALRSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTELT-EDYFPSVP 64

Query: 67 NNTTLMVLFDNEKWTP 82
          +N  L++L   + W  
Sbjct: 65 DNAELVLLTLGQAWQG 80

>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Caspase-activated DNase (CAD), DFF40, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.1 bits (242), Expect = 2e-27
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 6  QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL 65
           +  K+       K GV A S +E+ RK   +        ++ L  DGTE+  +D F  L
Sbjct: 8  PKCVKLRALHSACKFGVAARSCQELLRKGCVRFQLPMPGSRLCLYEDGTEVT-DDCFPGL 66

Query: 66 ENNTTLMVLFDNEKWTP 82
           N+  L++L   E W  
Sbjct: 67 PNDAELLLLTAGETWHG 83

>d1f2ri_ d.15.2.1 (I:) Inhibitor of caspase-activated DNase (ICAD), DFF45, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Inhibitor of caspase-activated DNase (ICAD), DFF45, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.4 bits (232), Expect = 9e-26
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 7  RPYKIIDYKRERKVGVVASSLEEIKRKAQDKL--SNTSDNIKILLESDGTEIDEEDYFCT 64
          +P  +       + GV ASSLEE++ KA + L    +   I ++L  DGT +D++DYF  
Sbjct: 19 KPCLLRRNHSRDQHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLC 78

Query: 65 LENNTTLMVLFDNEKWTP 82
          L +NT  + L  NEKWT 
Sbjct: 79 LPSNTKFVALACNEKWTY 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	191
d1c9fa_	87	Caspase-activated DNase (CAD), DFF40, N-terminal d	100.0
d1ibxa_	81	Caspase-activated DNase (CAD), DFF40, N-terminal d	100.0
d1d4ba_	122	Cell death-inducing effector B (CIDE-B), N-termina	100.0
d1f2ri_	100	Inhibitor of caspase-activated DNase (ICAD), DFF45	100.0
d1iyra_	83	C-terminal domain of DFF45/ICAD (DFF-C domain) {Hu	92.49

>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Caspase-activated DNase (CAD), DFF40, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-37  Score=231.73  Aligned_cols=82  Identities=27%  Similarity=0.371  Sum_probs=78.5

Q ss_pred             CCCCCCeEEecCCCceEeeeecCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcccCCCCeeEeeecCCCcccc
Q psy14653          3 EESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTP   82 (191)
Q Consensus         3 ~~~~KPfKV~n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~gekW~p   82 (191)
                      -+++|||||||++|++||||+|+||+||+.|||++|+|+..+++||||||||+| |||||+|||+||+||+|++||+|++
T Consensus         5 ~~~~kpfKV~~~~r~~k~Gv~A~sL~eL~~K~~~~l~i~~~~~~lvLeeDGT~V-dEeYF~tLp~nT~lm~L~~gq~W~g   83 (87)
T d1c9fa_           5 LRQPKCVKLRALHSACKFGVAARSCQELLRKGCVRFQLPMPGSRLCLYEDGTEV-TDDCFPGLPNDAELLLLTAGETWHG   83 (87)
T ss_dssp             CSSCEEEEEEETTSSCCCEEEESSHHHHHHHHHHHTTCCSTTCEEEETTTTCCB-CTTSCSSCCTTEEEEEECTTCCCCC
T ss_pred             CCCCCCeEEccCCCCceEeEEcCCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEe-cHHHHhcCCCCCEEEEECCCCccCC
Confidence            467899999999999999999999999999999999998778999999999999 7999999999999999999999999


Q ss_pred             cCC
Q psy14653         83 VKQ   85 (191)
Q Consensus        83 ~~~   85 (191)
                      +.+
T Consensus        84 ~~s   86 (87)
T d1c9fa_          84 YVS   86 (87)
T ss_dssp             SSC
T ss_pred             ccC
Confidence            875

>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Caspase-activated DNase (CAD), DFF40, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=227.85  Aligned_cols=79  Identities=28%  Similarity=0.462  Sum_probs=76.3

Q ss_pred             CCCCCeEEecCCCceEeeeecCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcccCCCCeeEeeecCCCccccc
Q psy14653          4 ESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTPV   83 (191)
Q Consensus         4 ~~~KPfKV~n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~gekW~p~   83 (191)
                      .++|||||||++|++||||+|+||+||+.|||++|+++..+++|||++|||+| |||||+|||+||+||+|.+||+|+|+
T Consensus         3 ~~~kpfKv~~~~r~~k~Gv~A~sL~eL~~K~~~~l~~~~~~~~lvLeeDGT~V-~EeYF~tLp~nT~lm~L~~ge~W~g~   81 (81)
T d1ibxa_           3 QKPKSVKLRALRSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTEL-TEDYFPSVPDNAELVLLTLGQAWQGH   81 (81)
T ss_dssp             SCCCCCBEECSSSSCCBBCCCSSHHHHHHHHHHHTTCCTTTSEEEESSSCSCC-CSSSCSSCCSCCCEEEECSSSCCCCC
T ss_pred             CCCCceEEccCCCCceEeEEcCCHHHHHHHHHHHhCCCCcCcEEEEecCCcEe-eHHHHhcCCCCcEEEEECCCCccCCC
Confidence            46899999999999999999999999999999999999888999999999999 89999999999999999999999985

>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Cell death-inducing effector B (CIDE-B), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-37  Score=243.13  Aligned_cols=83  Identities=36%  Similarity=0.638  Sum_probs=79.5

Q ss_pred             CCCCCCeEEecCCCceEeeeecCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcccCCCCeeEeeecCCCcccc
Q psy14653          3 EESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTP   82 (191)
Q Consensus         3 ~~~~KPfKV~n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~gekW~p   82 (191)
                      ++++|||||||++|++||||+|+||+||+.|||++|+|+. +++||||+|||+|||||||+|||+||+||+|++||+|+|
T Consensus        32 ~~~~RPfKV~~~~Rs~rkGV~A~SL~EL~~K~~~~L~i~~-~~~lvLeeDGT~Vd~EeYFqtL~~nT~lmvL~~gqkW~P  110 (122)
T d1d4ba_          32 PPPQRPFRVCDHKRTIRKGLTAATRQELLAKALETLLLNG-VLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSP  110 (122)
T ss_dssp             SCCCEEEEEECSSSSCEEEEEECCSSTHHHHHHHHHSCCS-SCEEEETTTTEEECSTHHHHHSSSCCCCCEECSSCCCCC
T ss_pred             CCCCCCeEEecCCCCeeeeEEcCCHHHHHHHHHHHhCCCC-CeEEEEeCCCCEECchhHhhccCCCCEEEEECCCCccCC
Confidence            6788999999999999999999999999999999999985 799999999999999999999999999999999999999


Q ss_pred             cCCc
Q psy14653         83 VKQF   86 (191)
Q Consensus        83 ~~~~   86 (191)
                      ..+.
T Consensus       111 ~~~~  114 (122)
T d1d4ba_         111 TRSG  114 (122)
T ss_dssp             CCCS
T ss_pred             CcCc
Confidence            8754

>d1f2ri_ d.15.2.1 (I:) Inhibitor of caspase-activated DNase (ICAD), DFF45, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Inhibitor of caspase-activated DNase (ICAD), DFF45, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.7e-36  Score=226.53  Aligned_cols=83  Identities=39%  Similarity=0.564  Sum_probs=75.0

Q ss_pred             CCCCCCeEEe---cCCCceEeeeecCcHHHHHHHHHhhhCCCC--CceeEEEccCCceeccchhcccCCCCeeEeeecCC
Q psy14653          3 EESQRPYKII---DYKRERKVGVVASSLEEIKRKAQDKLSNTS--DNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDN   77 (191)
Q Consensus         3 ~~~~KPfKV~---n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~--~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~g   77 (191)
                      ++.+||||+|   +++|+.||||+|+||+||+.|||++|+|+.  .+++||||+|||+|||||||+|||+||+||+|.+|
T Consensus        12 ~~~~rp~k~~~v~~~~~~~r~GV~A~SL~eL~~K~~~~l~i~~~~~~v~lvLeeDGTeVd~EeYF~tLp~nT~lm~L~~g   91 (100)
T d1f2ri_          12 PDDVRPLKPCLLRRNHSRDQHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTKFVALACN   91 (100)
T ss_dssp             CTTSCCCEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSCSCCEEEEECSS
T ss_pred             CCCCCCcceeeeccCCCcceeeEEcCCHHHHHHHHHHHhCCCCCccceEEEEeCCCcEEccHHHHhcCCCCCEEEEECCC
Confidence            4445776666   588889999999999999999999999975  37999999999999999999999999999999999


Q ss_pred             CcccccCC
Q psy14653         78 EKWTPVKQ   85 (191)
Q Consensus        78 ekW~p~~~   85 (191)
                      |+|+|...
T Consensus        92 qkW~p~~~   99 (100)
T d1f2ri_          92 EKWTYNDS   99 (100)
T ss_dssp             SCCSCTTC
T ss_pred             CccCCCCC
Confidence            99999754

>d1iyra_ a.164.1.1 (A:) C-terminal domain of DFF45/ICAD (DFF-C domain) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: C-terminal domain of DFF45/ICAD (DFF-C domain)
superfamily: C-terminal domain of DFF45/ICAD (DFF-C domain)
family: C-terminal domain of DFF45/ICAD (DFF-C domain)
domain: C-terminal domain of DFF45/ICAD (DFF-C domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.49  E-value=0.043  Score=38.76  Aligned_cols=63  Identities=27%  Similarity=0.314  Sum_probs=54.3

Q ss_pred             HHHHHHHhcccccccccCccchhhhcCCCcchHHhhcc-chHHHHHHHHHHhhHhhhHHHHHHH
Q psy14653         98 TQLLSLLQEDIGQLSLLGGQELELLSDMDPDNLLDIIP-DKMFLNQVKEASCRFLSDKRNAQEA  160 (191)
Q Consensus        98 ~~l~~qL~~dl~~i~llse~dLq~L~d~~~~~La~~~~-~~~~~~~lqet~~r~L~~r~earqs  160 (191)
                      -.+..-||+-..--..||.+|||+...=+|.-||..++ +..+.+.||.+|.+-|.+|-|.=||
T Consensus        15 s~iL~~LKeK~aPElsLSsQdLElV~ke~~~Ala~aL~Wd~~k~~avqqAC~qELs~RlqQVQs   78 (83)
T d1iyra_          15 SHILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQTQS   78 (83)
T ss_dssp             HHHHHHHHTTCCTTTTSCHHHHHHHHTSCHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHccCCCccccccHHHHHHHHccCHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666788888878889999999999999999999996 5888899999999999999765443