Psyllid ID: psy14657
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | 2.2.26 [Sep-21-2011] | |||||||
| Q294B9 | 633 | Histone-lysine N-methyltr | yes | N/A | 0.603 | 0.576 | 0.348 | 1e-64 | |
| Q9EQQ0 | 477 | Histone-lysine N-methyltr | yes | N/A | 0.595 | 0.754 | 0.381 | 2e-63 | |
| Q5F3W5 | 407 | Histone-lysine N-methyltr | yes | N/A | 0.6 | 0.891 | 0.401 | 2e-63 | |
| Q9H5I1 | 410 | Histone-lysine N-methyltr | yes | N/A | 0.601 | 0.887 | 0.378 | 5e-63 | |
| Q4R3E0 | 410 | Histone-lysine N-methyltr | N/A | N/A | 0.601 | 0.887 | 0.378 | 5e-63 | |
| Q28CQ7 | 406 | Histone-lysine N-methyltr | yes | N/A | 0.596 | 0.889 | 0.376 | 5e-63 | |
| Q32PH7 | 410 | Histone-lysine N-methyltr | yes | N/A | 0.601 | 0.887 | 0.374 | 5e-62 | |
| Q6DGD3 | 411 | Histone-lysine N-methyltr | yes | N/A | 0.581 | 0.856 | 0.379 | 5e-61 | |
| Q5RB81 | 412 | Histone-lysine N-methyltr | no | N/A | 0.588 | 0.864 | 0.368 | 3e-60 | |
| O43463 | 412 | Histone-lysine N-methyltr | no | N/A | 0.588 | 0.864 | 0.368 | 3e-60 |
| >sp|Q294B9|SUV39_DROPS Histone-lysine N-methyltransferase Su(var)3-9 OS=Drosophila pseudoobscura pseudoobscura GN=Su(var)3-9 PE=3 SV=1 | Back alignment and function desciption |
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Score = 248 bits (633), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 149/428 (34%), Positives = 211/428 (49%), Gaps = 63/428 (14%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAK--------------- 267
EY VE + +S+E+ V+ VKW YD NTWE NL +CA+
Sbjct: 212 EYIVEKI-ESVEVVQFQPVFFVKWLGYDVSANTWESYVNLSDCAEMEKFVERHLQLHQHY 270
Query: 268 ------------------------KLAEFLKAGPDQERTDFEKMKSF--LSQHTEEEVES 301
+AE P + + DF + + + ++ E E
Sbjct: 271 IAQITGELDTQLSDIPQTEDLKTISIAEIDAYDPLELQIDFILLAQYRAAASRSQREPER 330
Query: 302 VLAKLRNKKDFAYAHMLLLTHFLHGKRKQQLANIREAEERYNAACETAARLTLENNFDLE 361
+ A+ ++ +H R++QL ++ E R N + + +ENN+DL+
Sbjct: 331 IGARALHRMQVRRSHF---------ARRKQLIDLLLFEHRMNRVELPSPPIRVENNWDLD 381
Query: 362 SPPMDFTYIPSSVPRDGVVVTDDPVIWCECR---GNCVSNRDACCSDLNDADFAYSRRTK 418
+ F YI ++ +GV ++ C CR G + CC + FAY R T
Sbjct: 382 TIDSGFKYIQKNIIGEGVPKPQAGLVGCMCRHQSGEQCTASSMCCGRMAGEIFAYDRTTG 441
Query: 419 RLKLEKGTPIYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTF 478
RL+L G+ IYECN +C+CDE+C NRVVQ G PL +FKT N GWGVRTP +K G F
Sbjct: 442 RLRLRPGSAIYECNSRCSCDESCTNRVVQNGRKHPLVLFKTSNGSGWGVRTPQPLKKGVF 501
Query: 479 VCEYVGEILTHENALQR------TNQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFINHS 532
VCEY+GEI+T E A +R +TY F+LD+N +S + +DAA +GN+SHFINHS
Sbjct: 502 VCEYIGEIITCEEANERGKAYDDNGRTYLFDLDYNTSRDS-EYTVDAANFGNISHFINHS 560
Query: 533 CDPNLEVSR--INNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRNE 590
CDPNL V I +LN L H+ F R I EELSF Y+ + R +
Sbjct: 561 CDPNLAVFPCWIEHLNTALPHLVFFTIRPIKAGEELSFDYIRADNEEVPYENLSTAARVQ 620
Query: 591 CRCGSSNC 598
CRCG++NC
Sbjct: 621 CRCGAANC 628
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Histone methyltransferase that specifically trimethylates 'Lys-9' of histone H3 using monomethylated H3 'Lys-9' as substrate. H3 'Lys-9' trimethylation represents a specific tag for epigenetic transcriptional repression by recruiting Su(var)205/HP1 to methylated histones. Mainly functions in heterochromatin regions, thereby playing a central role in the establishment of constitutive heterochromatin at pericentric regions. Involved in heterochromatic gene silencing including the modification of position-effect-variegation. Drosophila pseudoobscura pseudoobscura (taxid: 46245) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3 |
| >sp|Q9EQQ0|SUV92_MOUSE Histone-lysine N-methyltransferase SUV39H2 OS=Mus musculus GN=Suv39h2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5F3W5|SUV92_CHICK Histone-lysine N-methyltransferase SUV39H2 OS=Gallus gallus GN=SUV39H2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9H5I1|SUV92_HUMAN Histone-lysine N-methyltransferase SUV39H2 OS=Homo sapiens GN=SUV39H2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q4R3E0|SUV92_MACFA Histone-lysine N-methyltransferase SUV39H2 OS=Macaca fascicularis GN=SUV39H2 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q28CQ7|SUV92_XENTR Histone-lysine N-methyltransferase SUV39H2 OS=Xenopus tropicalis GN=suv39h2 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q32PH7|SUV92_BOVIN Histone-lysine N-methyltransferase SUV39H2 OS=Bos taurus GN=SUV39H2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6DGD3|SV91A_DANRE Histone-lysine N-methyltransferase SUV39H1-A OS=Danio rerio GN=suv39h1a PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5RB81|SUV91_PONAB Histone-lysine N-methyltransferase SUV39H1 OS=Pongo abelii GN=SUV39H1 PE=2 SV=1 | Back alignment and function description |
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| >sp|O43463|SUV91_HUMAN Histone-lysine N-methyltransferase SUV39H1 OS=Homo sapiens GN=SUV39H1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| 345483484 | 503 | PREDICTED: histone-lysine N-methyltransf | 0.618 | 0.743 | 0.362 | 2e-70 | |
| 390353263 | 399 | PREDICTED: histone-lysine N-methyltransf | 0.616 | 0.934 | 0.407 | 1e-69 | |
| 321464251 | 519 | hypothetical protein DAPPUDRAFT_306854 [ | 0.613 | 0.714 | 0.373 | 2e-69 | |
| 84310040 | 615 | putative H3K9 methyltransferase [Lepisma | 0.621 | 0.611 | 0.355 | 3e-69 | |
| 94420672 | 683 | suppressor of variegation 3-9 isoform 1 | 0.606 | 0.537 | 0.380 | 7e-69 | |
| 383859816 | 1055 | PREDICTED: uncharacterized protein LOC10 | 0.565 | 0.324 | 0.402 | 8e-69 | |
| 340727719 | 1082 | PREDICTED: hypothetical protein LOC10065 | 0.566 | 0.317 | 0.399 | 7e-68 | |
| 84310036 | 585 | putative H3K9 methyltransferase [Enallag | 0.614 | 0.635 | 0.375 | 4e-67 | |
| 350412050 | 588 | PREDICTED: histone-lysine N-methyltransf | 0.571 | 0.588 | 0.394 | 3e-66 | |
| 347970198 | 855 | AGAP003597-PA [Anopheles gambiae str. PE | 0.576 | 0.408 | 0.386 | 3e-66 |
| >gi|345483484|ref|XP_001601155.2| PREDICTED: histone-lysine N-methyltransferase SUV39H2 [Nasonia vitripennis] | Back alignment and taxonomy information |
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Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 238/428 (55%), Gaps = 54/428 (12%)
Query: 224 YEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKAGPDQERTD 283
YEVE ++ ++ + + YL+KWKN+ +YNTWEP++NL NCA+ L EF + G +
Sbjct: 82 YEVEEIVGK-KIENYIIYYLIKWKNWSADYNTWEPVKNLTNCAELLKEF-EDGRLKLLER 139
Query: 284 FEKMKSFL--------------------------SQHTEEEVESVLAKLRNKKDFAYAHM 317
F+K +F + H E+++ + + NKK A
Sbjct: 140 FQKYSNFYPDTSVIERHMLDLFRQGKKIDSSLINTDHLYEKIKMFFS-INNKKTKTLAEN 198
Query: 318 L---LLTHFLHGKRKQQLANIREAEERYNAACETAARLTLENNFDLESPPMDFTYIPSSV 374
+ +L ++ R +QLA++++ E N+ + + +EN DLE P +F YI +
Sbjct: 199 IKENILHMLVYNSRTEQLASLKDWENEMNSITKGNPSIKVENLVDLERAPQEFLYIDDYL 258
Query: 375 PRDGVVVTDDPVIWCECRGNCVSNRDACCSDLNDADFAYSRRTKRLKLEKGTPIYECNKK 434
P GV++ ++P I CEC + ++ CC + D Y+ +R+++ GTPIYECNK+
Sbjct: 259 PGSGVIIPEEPPIGCEC--SICDSKTKCCYAMCDGSLPYTS-ARRIRVPPGTPIYECNKR 315
Query: 435 CACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQ 494
C C + C NRVVQ+G + L +F+T N RGWGV+T IK GTFV +YVGE++T+E A +
Sbjct: 316 CICPDNCQNRVVQRGSQMKLCVFRTSNGRGWGVKTLRVIKKGTFVIQYVGEVITNEEAEK 375
Query: 495 R------TNQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEVSR--INNLN 546
R +TY F+LD+N+ + +DAA YGN+SHFINHSCDPNL V I+ L+
Sbjct: 376 RGKEYDAAGRTYLFDLDYNETEGQCPYTVDAAIYGNISHFINHSCDPNLAVYAVWIDCLD 435
Query: 547 PDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLV-----------RNECRCGS 595
P+L +ALFA +DI +NEE++F Y+ T +R +L R C+CG+
Sbjct: 436 PNLPKLALFATKDIKQNEEITFDYMRQTVKDDLLRQRLELPEEMCNNKSLEHRTRCKCGA 495
Query: 596 SNCLGYYY 603
S C Y +
Sbjct: 496 SICRQYLF 503
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Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|390353263|ref|XP_782949.3| PREDICTED: histone-lysine N-methyltransferase SUV39H2-like [Strongylocentrotus purpuratus] | Back alignment and taxonomy information |
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| >gi|321464251|gb|EFX75260.1| hypothetical protein DAPPUDRAFT_306854 [Daphnia pulex] | Back alignment and taxonomy information |
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| >gi|84310040|emb|CAJ18350.1| putative H3K9 methyltransferase [Lepisma saccharina] | Back alignment and taxonomy information |
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| >gi|94420672|ref|NP_001035367.1| suppressor of variegation 3-9 isoform 1 [Apis mellifera] gi|84310021|emb|CAJ18340.1| putative H3K9 methyltransferase [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|383859816|ref|XP_003705388.1| PREDICTED: uncharacterized protein LOC100876321 [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|340727719|ref|XP_003402185.1| PREDICTED: hypothetical protein LOC100651661 [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|84310036|emb|CAJ18348.1| putative H3K9 methyltransferase [Enallagma cyathigerum] | Back alignment and taxonomy information |
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| >gi|350412050|ref|XP_003489528.1| PREDICTED: histone-lysine N-methyltransferase SUV39H2-like [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|347970198|ref|XP_313355.4| AGAP003597-PA [Anopheles gambiae str. PEST] gi|333468820|gb|EAA44650.4| AGAP003597-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| UNIPROTKB|Q294B9 | 633 | Su(var)3-9 "Histone-lysine N-m | 0.451 | 0.431 | 0.424 | 3.7e-66 | |
| UNIPROTKB|Q5F3W5 | 407 | SUV39H2 "Histone-lysine N-meth | 0.495 | 0.737 | 0.420 | 6.1e-66 | |
| UNIPROTKB|Q9H5I1 | 410 | SUV39H2 "Histone-lysine N-meth | 0.451 | 0.665 | 0.416 | 1.6e-65 | |
| MGI|MGI:1890396 | 477 | Suv39h2 "suppressor of variega | 0.525 | 0.666 | 0.384 | 3.3e-65 | |
| UNIPROTKB|Q32PH7 | 410 | SUV39H2 "Histone-lysine N-meth | 0.527 | 0.778 | 0.378 | 2.9e-64 | |
| UNIPROTKB|E2RHJ2 | 407 | SUV39H2 "Uncharacterized prote | 0.525 | 0.781 | 0.379 | 3.7e-64 | |
| FB|FBgn0263755 | 635 | Su(var)3-9 "Suppressor of vari | 0.444 | 0.423 | 0.411 | 2e-63 | |
| UNIPROTKB|Q27I49 | 350 | LOC100738592 "Uncharacterized | 0.527 | 0.911 | 0.378 | 9.9e-62 | |
| RGD|1306969 | 377 | Suv39h2 "suppressor of variega | 0.451 | 0.724 | 0.406 | 2.6e-61 | |
| MGI|MGI:1099440 | 412 | Suv39h1 "suppressor of variega | 0.472 | 0.694 | 0.392 | 1.6e-59 |
| UNIPROTKB|Q294B9 Su(var)3-9 "Histone-lysine N-methyltransferase Su(var)3-9" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] | Back alignment and assigned GO terms |
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Score = 587 (211.7 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
Identities = 121/285 (42%), Positives = 163/285 (57%)
Query: 325 HGKRKQQLANIREAEERYNAACETAARLTLENNFDLESPPMDFTYIPSSVPRDGVVVTDD 384
H R++QL ++ E R N + + +ENN+DL++ F YI ++ +GV
Sbjct: 345 HFARRKQLIDLLLFEHRMNRVELPSPPIRVENNWDLDTIDSGFKYIQKNIIGEGVPKPQA 404
Query: 385 PVIWCECR---GNCVSNRDACCSDLNDADFAYSRRTKRLKLEKGTPIYECNKKCACDETC 441
++ C CR G + CC + FAY R T RL+L G+ IYECN +C+CDE+C
Sbjct: 405 GLVGCMCRHQSGEQCTASSMCCGRMAGEIFAYDRTTGRLRLRPGSAIYECNSRCSCDESC 464
Query: 442 LNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQR------ 495
NRVVQ G PL +FKT N GWGVRTP +K G FVCEY+GEI+T E A +R
Sbjct: 465 TNRVVQNGRKHPLVLFKTSNGSGWGVRTPQPLKKGVFVCEYIGEIITCEEANERGKAYDD 524
Query: 496 TNQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEVSR--INNLNPDLHHVA 553
+TY F+LD+N +S + +DAA +GN+SHFINHSCDPNL V I +LN L H+
Sbjct: 525 NGRTYLFDLDYNTSRDS-EYTVDAANFGNISHFINHSCDPNLAVFPCWIEHLNTALPHLV 583
Query: 554 LFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRNECRCGSSNC 598
F R I EELSF Y+ + R +CRCG++NC
Sbjct: 584 FFTIRPIKAGEELSFDYIRADNEEVPYENLSTAARVQCRCGAANC 628
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| UNIPROTKB|Q5F3W5 SUV39H2 "Histone-lysine N-methyltransferase SUV39H2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9H5I1 SUV39H2 "Histone-lysine N-methyltransferase SUV39H2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:1890396 Suv39h2 "suppressor of variegation 3-9 homolog 2 (Drosophila)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q32PH7 SUV39H2 "Histone-lysine N-methyltransferase SUV39H2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RHJ2 SUV39H2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| FB|FBgn0263755 Su(var)3-9 "Suppressor of variegation 3-9" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q27I49 LOC100738592 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| RGD|1306969 Suv39h2 "suppressor of variegation 3-9 homolog 2 (Drosophila)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1099440 Suv39h1 "suppressor of variegation 3-9 homolog 1 (Drosophila)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9H5I1 | SUV92_HUMAN | 2, ., 1, ., 1, ., 4, 3 | 0.3789 | 0.6016 | 0.8878 | yes | N/A |
| Q32PH7 | SUV92_BOVIN | 2, ., 1, ., 1, ., 4, 3 | 0.3740 | 0.6016 | 0.8878 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1.43 | 0.737 |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 605 | |||
| smart00317 | 124 | smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest | 6e-31 | |
| pfam00856 | 113 | pfam00856, SET, SET domain | 7e-28 | |
| pfam05033 | 103 | pfam05033, Pre-SET, Pre-SET motif | 5e-26 | |
| pfam05033 | 103 | pfam05033, Pre-SET, Pre-SET motif | 5e-26 | |
| COG2940 | 480 | COG2940, COG2940, Proteins containing SET domain [ | 2e-20 | |
| smart00468 | 98 | smart00468, PreSET, N-terminal to some SET domains | 5e-14 | |
| smart00468 | 98 | smart00468, PreSET, N-terminal to some SET domains | 5e-14 | |
| cd00024 | 55 | cd00024, CHROMO, Chromatin organization modifier ( | 3e-13 | |
| smart00298 | 55 | smart00298, CHROMO, Chromatin organization modifie | 5e-13 | |
| pfam00385 | 52 | pfam00385, Chromo, Chromo (CHRromatin Organisation | 2e-11 |
| >gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 6e-31
Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 453 PLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTNQTYCFNLDFNQDSNS 512
L +FK+ +GWGVR + I G F+ EYVGEI+T E A +R D +
Sbjct: 2 KLEVFKSPG-KGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKA-----YDTDGAKAF 55
Query: 513 VAF------VLDAARYGNVSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEEL 566
F +DA R GN++ FINHSC+PN E+ + + +FA RDI EEL
Sbjct: 56 YLFDIDSDLCIDARRKGNLARFINHSCEPNCELLFVEVNGD--DRIVIFALRDIKPGEEL 113
Query: 567 SFCY 570
+ Y
Sbjct: 114 TIDY 117
|
Putative methyl transferase, based on outlier plant homologues. Length = 124 |
| >gnl|CDD|216155 pfam00856, SET, SET domain | Back alignment and domain information |
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| >gnl|CDD|218393 pfam05033, Pre-SET, Pre-SET motif | Back alignment and domain information |
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| >gnl|CDD|218393 pfam05033, Pre-SET, Pre-SET motif | Back alignment and domain information |
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| >gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] | Back alignment and domain information |
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| >gnl|CDD|128744 smart00468, PreSET, N-terminal to some SET domains | Back alignment and domain information |
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| >gnl|CDD|128744 smart00468, PreSET, N-terminal to some SET domains | Back alignment and domain information |
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| >gnl|CDD|237991 cd00024, CHROMO, Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus | Back alignment and domain information |
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| >gnl|CDD|214605 smart00298, CHROMO, Chromatin organization modifier domain | Back alignment and domain information |
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| >gnl|CDD|215889 pfam00385, Chromo, Chromo (CHRromatin Organisation MOdifier) domain | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| KOG1141|consensus | 1262 | 100.0 | ||
| KOG1082|consensus | 364 | 100.0 | ||
| KOG4442|consensus | 729 | 100.0 | ||
| KOG1080|consensus | 1005 | 99.94 | ||
| KOG1079|consensus | 739 | 99.91 | ||
| smart00317 | 116 | SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) | 99.86 | |
| KOG1083|consensus | 1306 | 99.79 | ||
| PF05033 | 103 | Pre-SET: Pre-SET motif; InterPro: IPR007728 This r | 99.79 | |
| smart00468 | 98 | PreSET N-terminal to some SET domains. A Cys-rich | 99.78 | |
| KOG1082|consensus | 364 | 99.76 | ||
| PF05033 | 103 | Pre-SET: Pre-SET motif; InterPro: IPR007728 This r | 99.68 | |
| KOG1085|consensus | 392 | 99.67 | ||
| smart00468 | 98 | PreSET N-terminal to some SET domains. A Cys-rich | 99.59 | |
| COG2940 | 480 | Proteins containing SET domain [General function p | 99.56 | |
| KOG1141|consensus | 1262 | 99.51 | ||
| PF00856 | 162 | SET: SET domain; InterPro: IPR001214 The SET domai | 99.43 | |
| PF00385 | 55 | Chromo: Chromo (CHRromatin Organisation MOdifier) | 99.32 | |
| cd00024 | 55 | CHROMO Chromatin organization modifier (chromo) do | 99.15 | |
| KOG1911|consensus | 270 | 98.99 | ||
| KOG2748|consensus | 369 | 98.98 | ||
| smart00298 | 55 | CHROMO Chromatin organization modifier domain. | 98.84 | |
| KOG2589|consensus | 453 | 98.73 | ||
| KOG1081|consensus | 463 | 98.67 | ||
| KOG2461|consensus | 396 | 98.22 | ||
| KOG4442|consensus | 729 | 96.6 | ||
| smart00508 | 26 | PostSET Cysteine-rich motif following a subset of | 96.41 | |
| KOG0384|consensus | 1373 | 95.39 | ||
| cd00034 | 54 | ChSh Chromo Shadow Domain, found in association wi | 94.0 | |
| PF01393 | 58 | Chromo_shadow: Chromo shadow domain Web page maint | 93.49 | |
| KOG2084|consensus | 482 | 93.04 | ||
| smart00300 | 61 | ChSh Chromo Shadow Domain. | 93.03 | |
| smart00570 | 51 | AWS associated with SET domains. subdomain of PRES | 92.79 | |
| PF11717 | 55 | Tudor-knot: RNA binding activity-knot of a chromod | 91.92 | |
| PF14061 | 50 | Mtf2_C: Polycomb-like MTF2 factor 2 | 89.75 | |
| KOG0384|consensus | 1373 | 88.23 | ||
| smart00570 | 51 | AWS associated with SET domains. subdomain of PRES | 87.76 |
| >KOG1141|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=435.42 Aligned_cols=478 Identities=25% Similarity=0.426 Sum_probs=320.7
Q ss_pred hhHHHHHHhhhcccCCCcchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HhhcCCCCccEEEeCCCCCCCCCCcEEcc
Q psy14657 30 HRTVSRFLFNRKLLSSAKDFAYAHMLLLTHFLHGKRKQQLANIREAEERY-NAACETAARLTLENNFDLESPPMDFTYIP 108 (605)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-n~~~~~~~~I~~~N~vD~~~~p~~F~Yi~ 108 (605)
-.++++||++ ++|+|++..+|+++.|++..|..+..+--.-.-+| +. ....||+.+|++|+..|| .|.|..
T Consensus 634 ~~el~ryL~e-----t~c~flf~~~f~~~~yV~~~r~~~p~kp~~~~~Di~~g--~e~vpis~~neids~~lp-q~ay~K 705 (1262)
T KOG1141|consen 634 RIELYRYLVE-----TRCKFLFVIGFDRAFYVVRHRAPNPLKPGNRCTDIPCG--REHVPISEKNEIDSHRLP-QAAYKK 705 (1262)
T ss_pred HHHHHHHHHH-----hcCcEEEEeecccchheeecccCCCcCCcceeccccCC--ccccccceeecccCcCCc-cchhhe
Confidence 3688999999 99999999999999999887776544222222233 22 245599999999988877 899999
Q ss_pred CCCCCCCccccC--CCcccccCCCCCcCCCcccccccc--------CCCccc--cccccceeeccCcccccCCCCcCCC-
Q psy14657 109 SSVPRDGVVVTD--DPVIWCECRGNCVSNRDACCSDLN--------DADFAY--SRRTKRLKLEKGTPIYECNKKCACD- 175 (605)
Q Consensus 109 ~~~~~~~~~~~~--~~~~gC~C~~~C~~~~~~cC~~~~--------~~~~~Y--~~~~~~l~~~~~~~IyECn~~C~C~- 175 (605)
+.|++.+..+.. +++++|+|..+|.+..+|+|.++. ++..+- +++++||.....+++|||+.+|+|.
T Consensus 706 ~~ip~~~nl~n~~~~fl~scdc~~gcid~~kcachQltvk~~~t~p~~~v~~t~gykyKRl~e~~ptg~yEc~k~ckc~~ 785 (1262)
T KOG1141|consen 706 HMIPTNNNLSNRRKDFLQSCDCPTGCIDSMKCACHQLTVKKKTTGPNQNVASTNGYKYKRLIEIRPTGPYECLKACKCCG 785 (1262)
T ss_pred eeccCCCcccccChhhhhcCCCCcchhhhhhhhHHHHHHHhhccCCCcccccCcchhhHHHHHhcCCCHHHHHHhhccCc
Confidence 999999988643 678999999999998899997663 111111 2235788888889999999999998
Q ss_pred cCCccceeeeCceeeeeEEEeeccCCceeEEEeecccccccccCCCceeEEeeeccceeec-CCcEEEEEeccCCCCCCC
Q psy14657 176 ETCLNRVVQKGNLVQDCHTTITSRDGSVVLLRVADINLTKFSSDTMTEYEVESVLDSLELT-SDMTVYLVKWKNYDPEYN 254 (605)
Q Consensus 176 ~~C~NRVvQ~G~~~~L~vf~~~~~kG~~~~~~~~~I~i~~~~~~~~~~y~vE~Ild~~~~~-~~~~~YlVkW~gy~~~~~ 254 (605)
+.|.||+||||.+|+||+|+ +.-+||| ++-...+..+.|++=|--...... ..+ .||-.-.
T Consensus 786 ~~C~nrmvqhg~qvRlq~fk-t~~kGWg---------~rclddi~~g~fVciy~g~~l~~~~sdk-------s~~~~~~- 847 (1262)
T KOG1141|consen 786 PDCLNRMVQHGYQVRLQRFK-TIHKGWG---------RRCLDDITGGNFVCIYPGGALLHQISDK-------SEYIHVT- 847 (1262)
T ss_pred HHHHHHHhhcCceeEeeecc-ccccccc---------eEeeeecCCceEEEEecchhhhhhhchh-------hhhcccc-
Confidence 56999999999999999999 7778999 555556666666665543221000 000 0110000
Q ss_pred cccccccccchHHHHHHHHHhCCCCchhhHHHHhhccCCChhHHHHHHHHHHhcccchhhhhHHHHHHHHhhhhHHHHhh
Q psy14657 255 TWEPIENLGNCAKKLAEFLKAGPDQERTDFEKMKSFLSQHTEEEVESVLAKLRNKKDFAYAHMLLLTHFLHGKRKQQLAN 334 (605)
Q Consensus 255 TWEp~~nl~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~kR~~ql~~ 334 (605)
+...+| +| ..|.+. +....+.... .....
T Consensus 848 --~~~~~i-d~----~~f~~~------------------------------~dt~~~~tvD--------------~~g~d 876 (1262)
T KOG1141|consen 848 --RSLLTI-DC----FSFDAR------------------------------IDTATYITVD--------------DKGLD 876 (1262)
T ss_pred --hhhhcc-cc----cchhcc------------------------------ccccceeecc--------------ccccc
Confidence 000111 11 011111 1111110000 00001
Q ss_pred HHHHHHHHHhccCCCcceEEEcCCCCCCCCC------CcEEeeecccCCCccccCCCCcccccCCCCcCCCccc-ccccC
Q psy14657 335 IREAEERYNAACETAARLTLENNFDLESPPM------DFTYIPSSVPRDGVVVTDDPVIWCECRGNCVSNRDAC-CSDLN 407 (605)
Q Consensus 335 l~~we~~~n~~~~~~~pi~~~N~vd~~~~p~------~F~yi~~~~~~~~~~~~~~~~~gC~C~~~C~~~~~~C-c~~~~ 407 (605)
++.++ .+....|||.+|.+|.+.||. .|.|..+.-.. + .......||+|.+.|.+... | |....
T Consensus 877 ~~d~~-----~g~sg~~~p~~~~~d~~~~~~c~d~~~~~~~~~~~~~s-~--~~~~~~~~~s~d~hp~d~~~-~~~~~~~ 947 (1262)
T KOG1141|consen 877 VADFS-----LGTSGIPIPLVNSVDNDEPPSCEDSKRRFQYNDQVDIS-S--VSRDFCSGCSCDGHPSDASK-CECQQLS 947 (1262)
T ss_pred hhhhh-----ccccCCCCccccccccCCCccccccceeecccccchhh-h--hccccccccccCCCCcccCc-ccCCCCC
Confidence 11111 134568999999999888875 34443321111 1 23455679999988987766 5 43322
Q ss_pred C-------CCccee-------cccCcccccCCCceEecCCCCCCCCCCcCcccccCCCcCEE--------EEEeCCCCce
Q psy14657 408 D-------ADFAYS-------RRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKGITLPLT--------IFKTKNNRGW 465 (605)
Q Consensus 408 ~-------~~~~y~-------~~~~~l~~~~~~~i~EC~~~C~C~~~C~Nrv~q~g~~~~l~--------i~~t~~~kG~ 465 (605)
. ..+..+ ...... .......+||+..|.|...|.|+++|.+.+.+++ |+++ ...||
T Consensus 948 ~~~~~~cpp~~s~d~~~~~~eS~~~~n-s~~~~~f~e~~~hss~~~~e~~~~v~~~~~~~me~~s~~~l~i~~~-~~~~~ 1025 (1262)
T KOG1141|consen 948 IEAMKRCPPNLSFDGHDELYESSEKQN-SFLKLFFFECNDHSSCHRKEYNRVVQNNIKYPMEVSSFNDLQIFKT-AQSGW 1025 (1262)
T ss_pred hhhhcCCCCccccCchhhhhhhhhhcc-hhhhccceeccccchhcccccchhhhcCCccceeeeeccccccccc-ccccc
Confidence 1 011111 000000 0011246899999999999999999998877665 5555 56799
Q ss_pred eEEcCCccCCCcEEEEeeeeeecHHHHHhh---cCCceeeeccCCC----------------------------------
Q psy14657 466 GVRTPDKIKAGTFVCEYVGEILTHENALQR---TNQTYCFNLDFNQ---------------------------------- 508 (605)
Q Consensus 466 Gv~A~~~I~~G~~I~ey~Gevi~~~e~~~r---~~~~y~f~l~~~~---------------------------------- 508 (605)
|+++..||+.-+||++|+|...+..-+.+. ..+.|.-++|...
T Consensus 1026 ~~~edtD~~~~~~~~~~~~~ppt~~l~~~~r~aqad~~sn~~D~~~~~~l~es~~~~~T~~r~~t~~~~~~~~~d~dd~q 1105 (1262)
T KOG1141|consen 1026 GVREDTDIPQSTFICTYVGAPPTDDLADELRNAQADQYSNDLDLKDTVELEESREDHETDFRGDTSDYDDEEGSDGDDGQ 1105 (1262)
T ss_pred cccccccCCCCcccccccCCCCchhhHHHHhhhhhccccCccchhhhhhhhhcccccccccCCCCCCCcccccccCccHH
Confidence 999999999999999999988766544432 0111111111000
Q ss_pred ----------------C---------------------------------------------------CCCceEEEeeee
Q psy14657 509 ----------------D---------------------------------------------------SNSVAFVLDAAR 521 (605)
Q Consensus 509 ----------------~---------------------------------------------------~~~~~~~IDa~~ 521 (605)
+ ....-|+|||+.
T Consensus 1106 ~I~k~ve~qd~~~~~~~T~~~~RQ~~~~s~k~~~~~s~~~~~~ts~~~~~~dkges~~~~~~~~~~y~~~~~~yvIDAk~ 1185 (1262)
T KOG1141|consen 1106 DIMKMVERQDSSESGEETKRLTRQKRKQSKKSGKGGSVEKDDTTSRDSMEKDKGESKDEPVFNWDKYFEPFPLYVIDAKQ 1185 (1262)
T ss_pred HHHHHhhcccccccccccchhhhhhhhhhhhcccCccccccccCccchhhhccCccCcccccchhhccCCCceEEEeccc
Confidence 0 012578999999
Q ss_pred ccCcccccccCCCCCeeEE--EEecCCCCeeEEEEEEcCCCCCCCeEEEecCCCcccccchhhhcCCCCeeeecCCCCCc
Q psy14657 522 YGNVSHFINHSCDPNLEVS--RINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRNECRCGSSNCL 599 (605)
Q Consensus 522 ~GN~~RfiNHSC~PN~~~~--~~~~~d~~~~~i~~fA~rdI~~GEELT~dY~~~~~~~~~~~~~~~~~~~~C~Cgs~~Cr 599 (605)
.||++||+||||+||+.++ +++.+|..+|.++|||.+-|+||+||||||++..+.. ......|+||+.+||
T Consensus 1186 eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v-------~~keL~C~CGa~~Cr 1258 (1262)
T KOG1141|consen 1186 EGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQV-------ATKELTCHCGAENCR 1258 (1262)
T ss_pred ccchhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeecccccccc-------ccceEEEecChhhhh
Confidence 9999999999999999999 8999999999999999999999999999999976521 224578999999999
Q ss_pred ccc
Q psy14657 600 GYY 602 (605)
Q Consensus 600 g~l 602 (605)
|.|
T Consensus 1259 grL 1261 (1262)
T KOG1141|consen 1259 GRL 1261 (1262)
T ss_pred ccc
Confidence 987
|
|
| >KOG1082|consensus | Back alignment and domain information |
|---|
| >KOG4442|consensus | Back alignment and domain information |
|---|
| >KOG1080|consensus | Back alignment and domain information |
|---|
| >KOG1079|consensus | Back alignment and domain information |
|---|
| >smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
|---|
| >KOG1083|consensus | Back alignment and domain information |
|---|
| >PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain | Back alignment and domain information |
|---|
| >smart00468 PreSET N-terminal to some SET domains | Back alignment and domain information |
|---|
| >KOG1082|consensus | Back alignment and domain information |
|---|
| >PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain | Back alignment and domain information |
|---|
| >KOG1085|consensus | Back alignment and domain information |
|---|
| >smart00468 PreSET N-terminal to some SET domains | Back alignment and domain information |
|---|
| >COG2940 Proteins containing SET domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1141|consensus | Back alignment and domain information |
|---|
| >PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco | Back alignment and domain information |
|---|
| >PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation | Back alignment and domain information |
|---|
| >cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus | Back alignment and domain information |
|---|
| >KOG1911|consensus | Back alignment and domain information |
|---|
| >KOG2748|consensus | Back alignment and domain information |
|---|
| >smart00298 CHROMO Chromatin organization modifier domain | Back alignment and domain information |
|---|
| >KOG2589|consensus | Back alignment and domain information |
|---|
| >KOG1081|consensus | Back alignment and domain information |
|---|
| >KOG2461|consensus | Back alignment and domain information |
|---|
| >KOG4442|consensus | Back alignment and domain information |
|---|
| >smart00508 PostSET Cysteine-rich motif following a subset of SET domains | Back alignment and domain information |
|---|
| >KOG0384|consensus | Back alignment and domain information |
|---|
| >cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e | Back alignment and domain information |
|---|
| >PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain | Back alignment and domain information |
|---|
| >KOG2084|consensus | Back alignment and domain information |
|---|
| >smart00300 ChSh Chromo Shadow Domain | Back alignment and domain information |
|---|
| >smart00570 AWS associated with SET domains | Back alignment and domain information |
|---|
| >PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F | Back alignment and domain information |
|---|
| >PF14061 Mtf2_C: Polycomb-like MTF2 factor 2 | Back alignment and domain information |
|---|
| >KOG0384|consensus | Back alignment and domain information |
|---|
| >smart00570 AWS associated with SET domains | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 605 | ||||
| 2r3a_A | 300 | Methyltransferase Domain Of Human Suppressor Of Var | 5e-56 | ||
| 1mvh_A | 299 | Structure Of The Set Domain Histone Lysine Methyltr | 5e-39 | ||
| 1ml9_A | 302 | Structure Of The Neurospora Set Domain Protein Dim- | 1e-32 | ||
| 2o8j_A | 281 | Human Euchromatic Histone Methyltransferase 2 Lengt | 3e-32 | ||
| 3k5k_A | 283 | Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin | 3e-32 | ||
| 2igq_A | 285 | Human Euchromatic Histone Methyltransferase 1 Lengt | 1e-29 | ||
| 3hna_A | 287 | Crystal Structure Of Catalytic Domain Of Human Euch | 1e-29 | ||
| 3fpd_A | 261 | G9a-Like Protein Lysine Methyltransferase Inhibitio | 2e-29 | ||
| 4i51_A | 286 | Methyltransferase Domain Of Human Euchromatic Histo | 4e-29 | ||
| 3bo5_A | 290 | Crystal Structure Of Methyltransferase Domain Of Hu | 7e-27 | ||
| 3ope_A | 222 | Structural Basis Of Auto-Inhibitory Mechanism Of Hi | 4e-18 | ||
| 3ooi_A | 232 | Crystal Structure Of Human Histone-Lysine N-Methylt | 8e-16 | ||
| 4fmu_A | 278 | Crystal Structure Of Methyltransferase Domain Of Hu | 2e-15 | ||
| 2w5y_A | 192 | Binary Complex Of The Mixed Lineage Leukaemia (Mll1 | 1e-08 | ||
| 1g6z_A | 70 | Solution Structure Of The Clr4 Chromo Domain Length | 2e-06 | ||
| 2dnt_A | 78 | Solution Structure Of Rsgi Ruh-064, A Chromo Domain | 3e-06 | ||
| 4ft2_A | 784 | Crystal Structure Of Zea Mays Zmet2 In Complex H3(1 | 9e-06 | ||
| 4fsx_A | 784 | Crystal Structure Of Se-Substituted Zea Mays Zmet2 | 9e-06 | ||
| 3fdt_A | 59 | Crystal Structure Of The Complex Of Human Chromobox | 1e-05 | ||
| 3oxg_A | 464 | Human Lysine Methyltransferase Smyd3 In Complex Wit | 4e-05 | ||
| 3qwp_A | 429 | Crystal Structure Of Set And Mynd Domain Containing | 4e-05 | ||
| 3ru0_A | 438 | Cocrystal Structure Of Human Smyd3 With Inhibitor S | 4e-05 | ||
| 3oxf_A | 436 | Human Lysine Methyltransferase Smyd3 In Complex Wit | 4e-05 | ||
| 3pdn_A | 428 | Crystal Structure Of Smyd3 In Complex With Methyltr | 4e-05 | ||
| 3f2u_A | 55 | Crystal Structure Of Human Chromobox Homolog 1 (Cbx | 5e-05 | ||
| 4ij8_A | 165 | Crystal Structure Of The Complex Of Setd8 With Sam | 1e-04 | ||
| 3f9w_A | 166 | Structural Insights Into Lysine Multiple Methylatio | 1e-04 | ||
| 3mek_A | 429 | Crystal Structure Of Human Histone-Lysine N- Methyl | 2e-04 | ||
| 1zkk_A | 167 | Crystal Structure Of Hset8 In Ternary Complex With | 3e-04 | ||
| 2bqz_A | 161 | Crystal Structure Of A Ternary Complex Of The Human | 3e-04 | ||
| 1ap0_A | 73 | Structure Of The Chromatin Binding (Chromo) Domain | 5e-04 | ||
| 3f9z_A | 166 | Structural Insights Into Lysine Multiple Methylatio | 8e-04 |
| >pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 | Back alignment and structure |
|
| >pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 | Back alignment and structure |
| >pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 | Back alignment and structure |
| >pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 | Back alignment and structure |
| >pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 | Back alignment and structure |
| >pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 | Back alignment and structure |
| >pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 | Back alignment and structure |
| >pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 | Back alignment and structure |
| >pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 | Back alignment and structure |
| >pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 | Back alignment and structure |
| >pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 | Back alignment and structure |
| >pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 | Back alignment and structure |
| >pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 | Back alignment and structure |
| >pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 | Back alignment and structure |
| >pdb|1G6Z|A Chain A, Solution Structure Of The Clr4 Chromo Domain Length = 70 | Back alignment and structure |
| >pdb|2DNT|A Chain A, Solution Structure Of Rsgi Ruh-064, A Chromo Domain From Human Cdna Length = 78 | Back alignment and structure |
| >pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex H3(1-15)k9me2 Peptide And Sah Length = 784 | Back alignment and structure |
| >pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In Complex With Sah Length = 784 | Back alignment and structure |
| >pdb|3FDT|A Chain A, Crystal Structure Of The Complex Of Human Chromobox Homolog 5 (Cbx5) With H3k9(Me)3 Peptide Length = 59 | Back alignment and structure |
| >pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form Iii) Length = 464 | Back alignment and structure |
| >pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc Finger Mynd Domain-Containing Protein 1 Length = 429 | Back alignment and structure |
| >pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin Bound Length = 438 | Back alignment and structure |
| >pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form I) Length = 436 | Back alignment and structure |
| >pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase Inhibitor Sinefungin Length = 428 | Back alignment and structure |
| >pdb|3F2U|A Chain A, Crystal Structure Of Human Chromobox Homolog 1 (Cbx1) Length = 55 | Back alignment and structure |
| >pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam Length = 165 | Back alignment and structure |
| >pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY Length = 166 | Back alignment and structure |
| >pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N- Methyltransferase Smyd3 In Complex With S-Adenosyl-L- Methionine Length = 429 | Back alignment and structure |
| >pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 | Back alignment and structure |
| >pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 | Back alignment and structure |
| >pdb|1AP0|A Chain A, Structure Of The Chromatin Binding (Chromo) Domain From Mouse Modifier Protein 1, Nmr, 26 Structures Length = 73 | Back alignment and structure |
| >pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY Length = 166 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 277 bits (711), Expect = 2e-89
Identities = 119/288 (41%), Positives = 159/288 (55%), Gaps = 21/288 (7%)
Query: 327 KRKQQLANIREAEERYNAACETAARLTLENNFDLESPPMDFTYIPSSVPRDGVVVTDDPV 386
K+ +Q ++ ++ N + +EN DLE PP DF YI P G+ + ++
Sbjct: 19 KKAKQRIALQRWQDELNRRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPGISLVNEAT 78
Query: 387 IWCECRGNCVSNRDACCSDLNDADFAYSRRTKRLKLEKGTPIYECNKKCACDETCLNRVV 446
C C CC AY++ +++K+ GTPIYECN +C C C NR+V
Sbjct: 79 FGCSCTDCFFQK---CCPAEAGVLLAYNKN-QQIKIPPGTPIYECNSRCQCGPDCPNRIV 134
Query: 447 QKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTNQ------TY 500
QKG L IF+T N RGWGV+T KIK +FV EYVGE++T E A +R TY
Sbjct: 135 QKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITY 194
Query: 501 CFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEVS--RINNLNPDLHHVALFAKR 558
F+LD+ D F +DAARYGNVSHF+NHSCDPNL+V I+NL+ L +ALF+ R
Sbjct: 195 LFDLDYESD----EFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTR 250
Query: 559 DINKNEELSFCY-----LDLTKAKFTSSKRKKLVRNECRCGSSNCLGY 601
IN EEL+F Y D++ S KK VR C+CG+ C GY
Sbjct: 251 TINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGY 298
|
| >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
| >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 | Back alignment and structure |
|---|
| >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 | Back alignment and structure |
|---|
| >3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 | Back alignment and structure |
|---|
| >3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 | Back alignment and structure |
|---|
| >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 | Back alignment and structure |
|---|
| >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 | Back alignment and structure |
|---|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 | Back alignment and structure |
|---|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 | Back alignment and structure |
|---|
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 | Back alignment and structure |
|---|
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 | Back alignment and structure |
|---|
| >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 | Back alignment and structure |
|---|
| >2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 | Back alignment and structure |
|---|
| >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 | Back alignment and structure |
|---|
| >3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 | Back alignment and structure |
|---|
| >2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2 Length = 78 | Back alignment and structure |
|---|
| >1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2 Length = 70 | Back alignment and structure |
|---|
| >3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} PDB: 3r93_A* 3svm_A* 3qo2_A* Length = 62 | Back alignment and structure |
|---|
| >3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe} Length = 61 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 | Back alignment and structure |
|---|
| >3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 | Back alignment and structure |
|---|
| >2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 | Back alignment and structure |
|---|
| >3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens} Length = 59 | Back alignment and structure |
|---|
| >3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 | Back alignment and structure |
|---|
| >1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A* Length = 73 | Back alignment and structure |
|---|
| >3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
| >3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A* Length = 55 | Back alignment and structure |
|---|
| >1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A* Length = 69 | Back alignment and structure |
|---|
| >3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens} Length = 64 | Back alignment and structure |
|---|
| >2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2 Length = 64 | Back alignment and structure |
|---|
| >2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A* Length = 73 | Back alignment and structure |
|---|
| >2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
| >3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} PDB: 2k28_A 3i8z_A Length = 54 | Back alignment and structure |
|---|
| >2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus} Length = 74 | Back alignment and structure |
|---|
| >1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2 Length = 72 | Back alignment and structure |
|---|
| >3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} PDB: 3gv6_A* 3i90_A* Length = 54 | Back alignment and structure |
|---|
| >1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2 Length = 55 | Back alignment and structure |
|---|
| >3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 | Back alignment and structure |
|---|
| >3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 | Back alignment and structure |
|---|
| >2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C Length = 115 | Back alignment and structure |
|---|
| >1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2 Length = 54 | Back alignment and structure |
|---|
| >2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| 2r3a_A | 300 | Histone-lysine N-methyltransferase SUV39H2; histon | 100.0 | |
| 1mvh_A | 299 | Cryptic LOCI regulator 4; lysine methyltransferase | 100.0 | |
| 3hna_A | 287 | Histone-lysine N-methyltransferase, H3 lysine-9 sp | 100.0 | |
| 1ml9_A | 302 | Histone H3 methyltransferase DIM-5; adoMet-depende | 100.0 | |
| 3bo5_A | 290 | Histone-lysine N-methyltransferase setmar; SET dom | 100.0 | |
| 3h6l_A | 278 | Histone-lysine N-methyltransferase SETD2; SET doma | 100.0 | |
| 3ooi_A | 232 | Histone-lysine N-methyltransferase, H3 lysine-36 l | 100.0 | |
| 3ope_A | 222 | Probable histone-lysine N-methyltransferase ASH1L; | 100.0 | |
| 2w5y_A | 192 | Histone-lysine N-methyltransferase HRX; transcript | 100.0 | |
| 3f9x_A | 166 | Histone-lysine N-methyltransferase SETD8; methyltr | 99.96 | |
| 2r3a_A | 300 | Histone-lysine N-methyltransferase SUV39H2; histon | 99.96 | |
| 2f69_A | 261 | Histone-lysine N-methyltransferase, H3 lysine-4 sp | 99.94 | |
| 1n3j_A | 119 | A612L, histone H3 lysine methyltransferase; beta b | 99.93 | |
| 2qpw_A | 149 | PR domain zinc finger protein 2; methyltransferase | 99.92 | |
| 3s8p_A | 273 | Histone-lysine N-methyltransferase SUV420H1; SET d | 99.91 | |
| 1mvh_A | 299 | Cryptic LOCI regulator 4; lysine methyltransferase | 99.9 | |
| 1h3i_A | 293 | Histone H3 lysine 4 specific methyltransferase; 2. | 99.89 | |
| 3hna_A | 287 | Histone-lysine N-methyltransferase, H3 lysine-9 sp | 99.88 | |
| 1ml9_A | 302 | Histone H3 methyltransferase DIM-5; adoMet-depende | 99.87 | |
| 3rq4_A | 247 | Histone-lysine N-methyltransferase SUV420H2; suppr | 99.86 | |
| 3ep0_A | 170 | PR domain zinc finger protein 12; PR domain-contai | 99.81 | |
| 3db5_A | 151 | PR domain zinc finger protein 4; methyltransferase | 99.78 | |
| 3dal_A | 196 | PR domain zinc finger protein 1; methyltransferase | 99.77 | |
| 3bo5_A | 290 | Histone-lysine N-methyltransferase setmar; SET dom | 99.76 | |
| 2rsn_A | 75 | Chromo domain-containing protein 1; chromodomain, | 99.65 | |
| 3f2u_A | 55 | Chromobox protein homolog 1; human chromobox homol | 99.62 | |
| 3ray_A | 237 | PR domain-containing protein 11; structural genomi | 99.62 | |
| 3lwe_A | 62 | M-phase phosphoprotein 8; MPP8, structural genomic | 99.6 | |
| 3fdt_A | 59 | Chromobox protein homolog 5; chromobox homolog5, C | 99.6 | |
| 2rso_A | 92 | Chromatin-associated protein SWI6; chromodomain, s | 99.59 | |
| 1q3l_A | 69 | Heterochromatin protein 1; chromodomain, HP1, chro | 99.58 | |
| 1pdq_A | 72 | Polycomb protein; methyllysine, chromodomain, poly | 99.58 | |
| 3i91_A | 54 | Chromobox protein homolog 8; chromobox homolog 8, | 99.58 | |
| 4hae_A | 81 | CDY-like 2, chromodomain Y-like protein 2; protein | 99.58 | |
| 1pfb_A | 55 | Polycomb protein; chromatin, histone methylation, | 99.57 | |
| 3g7l_A | 61 | Chromo domain-containing protein 1; chromodomain, | 99.57 | |
| 3h91_A | 54 | Chromobox protein homolog 2; human chromobox homol | 99.57 | |
| 2dnt_A | 78 | Chromodomain protein, Y chromosome-like, isoform B | 99.57 | |
| 1g6z_A | 70 | CLR4 protein; transferase; NMR {Schizosaccharomyce | 99.57 | |
| 2k1b_A | 73 | Chromobox protein homolog 7; alpha/beta protein, c | 99.56 | |
| 1ap0_A | 73 | Modifier protein 1; chromatin-binding, protein int | 99.56 | |
| 2dnv_A | 64 | Chromobox protein homolog 8; chromo domain, histon | 99.56 | |
| 2d9u_A | 74 | Chromobox protein homolog 2 (isoform 2); chromobox | 99.51 | |
| 3ihx_A | 152 | PR domain zinc finger protein 10; PRDM10, methyltr | 99.49 | |
| 2kvm_A | 74 | Chromobox protein homolog 7; histone modification, | 99.49 | |
| 3mts_A | 64 | Histone-lysine N-methyltransferase SUV39H1; histon | 99.48 | |
| 1x3p_A | 54 | Cpsrp43; chromo-2 domain, chloroplasts, LHCP, prot | 99.27 | |
| 2epb_A | 68 | Chromodomain-helicase-DNA-binding protein 6; struc | 99.26 | |
| 2ee1_A | 64 | Chromodomain helicase-DNA-binding protein 4; EC 3. | 99.18 | |
| 2b2y_C | 115 | CHD-1, chromodomain-helicase-DNA-binding protein 1 | 98.98 | |
| 3ooi_A | 232 | Histone-lysine N-methyltransferase, H3 lysine-36 l | 98.97 | |
| 3h6l_A | 278 | Histone-lysine N-methyltransferase SETD2; SET doma | 98.97 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.83 | |
| 3ope_A | 222 | Probable histone-lysine N-methyltransferase ASH1L; | 98.8 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.8 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.77 | |
| 2b2y_A | 187 | CHD-1, chromodomain-helicase-DNA-binding protein 1 | 98.6 | |
| 2h1e_A | 177 | Chromo domain protein 1; CHD1, tandem chromodomain | 98.57 | |
| 2b2y_A | 187 | CHD-1, chromodomain-helicase-DNA-binding protein 1 | 98.18 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 98.05 | |
| 2h1e_A | 177 | Chromo domain protein 1; CHD1, tandem chromodomain | 97.97 | |
| 3kup_A | 65 | Chromobox protein homolog 3; chromo shadow domain, | 97.92 | |
| 2fmm_A | 74 | Chromobox protein homolog 1; ENT domain, chromo sh | 97.8 | |
| 3i3c_A | 75 | Chromobox protein homolog 5; CBX5, chromo shadow d | 97.7 | |
| 3q6s_A | 78 | Chromobox protein homolog 1; incenp, heterochromat | 97.57 | |
| 3p7j_A | 87 | Heterochromatin protein 1; chromo shadow domain, g | 97.56 | |
| 3qxy_A | 449 | N-lysine methyltransferase SETD6; epigenetics, pro | 96.83 | |
| 2h21_A | 440 | Ribulose-1,5 bisphosphate carboxylase/oxygenase; S | 95.36 | |
| 3smt_A | 497 | Histone-lysine N-methyltransferase SETD3; histone | 95.32 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 93.94 | |
| 2w5y_A | 192 | Histone-lysine N-methyltransferase HRX; transcript | 92.57 | |
| 2f69_A | 261 | Histone-lysine N-methyltransferase, H3 lysine-4 sp | 91.96 | |
| 3f9x_A | 166 | Histone-lysine N-methyltransferase SETD8; methyltr | 91.14 | |
| 1e0b_A | 68 | SWI6 protein; chromatin-binding, chromodomain, sha | 89.34 | |
| 2lcc_A | 76 | AT-rich interactive domain-containing protein 4A; | 85.61 | |
| 3ui2_A | 244 | Signal recognition particle 43 kDa protein, chlor; | 83.85 | |
| 2f5k_A | 102 | MORF-related gene 15 isoform 1; beta barrel, gene | 82.16 |
| >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-60 Score=488.52 Aligned_cols=281 Identities=42% Similarity=0.778 Sum_probs=233.2
Q ss_pred hhhhhHHHHHHHHhhhhHHHHhhHHHHHHHHHhccCCCcceEEEcCCCCCCCCCCcEEeeecccCCCccccCCCCccccc
Q psy14657 312 FAYAHMLLLTHFLHGKRKQQLANIREAEERYNAACETAARLTLENNFDLESPPMDFTYIPSSVPRDGVVVTDDPVIWCEC 391 (605)
Q Consensus 312 ~~~~~~~~~~~~l~~kR~~ql~~l~~we~~~n~~~~~~~pi~~~N~vd~~~~p~~F~yi~~~~~~~~~~~~~~~~~gC~C 391 (605)
.+.+++++..+++ +|.+|+.+|++||+.+|.....+.||+++|+||++.||.+|+||++++++.++.+......||+|
T Consensus 6 ~~~~~~~~~~~~~--~~~~q~~~~~~w~~~~~~~~~~~~~i~~~N~vd~~~~P~~f~yi~~~~~~~~~~~~~~~~~gC~C 83 (300)
T 2r3a_A 6 NKTLKPAIAEYIV--KKAKQRIALQRWQDELNRRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPGISLVNEATFGCSC 83 (300)
T ss_dssp --------CHHHH--HHHHHHHHHHHHHHHHHHHCCSSSCEEEECSSSCCCCCSSCEECSSCEECTTCCCC---CCCCCC
T ss_pred hhhcCHHHHHHHH--hhhhhHHHHHHHHHHhcccccCCCCeEEEeCcCCccCCCCEEECcccccCCCCccCCCCCCCcCC
Confidence 3456666666655 89999999999999999998888999999999999999999999999999998876667889999
Q ss_pred CCCCcCCCcccccccCCCCcceecccCcccccCCCceEecCCCCCCCCCCcCcccccCCCcCEEEEEeCCCCceeEEcCC
Q psy14657 392 RGNCVSNRDACCSDLNDADFAYSRRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTPD 471 (605)
Q Consensus 392 ~~~C~~~~~~Cc~~~~~~~~~y~~~~~~l~~~~~~~i~EC~~~C~C~~~C~Nrv~q~g~~~~l~i~~t~~~kG~Gv~A~~ 471 (605)
. +|.+.. ||....+..++|+.. |+|.++.+.+||||++.|.|+..|.||++|+|.+.+|+||++++++||||||++
T Consensus 84 ~-~C~~~~--cc~~~~~~~~~Y~~~-g~l~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~~l~vfrt~~~kG~Gl~A~~ 159 (300)
T 2r3a_A 84 T-DCFFQK--CCPAEAGVLLAYNKN-QQIKIPPGTPIYECNSRCQCGPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLV 159 (300)
T ss_dssp S-STTTSS--CHHHHTTSCCSBCTT-SCBCSCTTCCEECCCTTSSCCTTCTTCSGGGCCCSCEEEEECSSSCCEEEEESS
T ss_pred c-CCCCCC--cchhhccCccccccC-CcEeccCCCcEEeCCCCCCCCCcCCCccccccccccEEEEEeCCCceEEEEeCc
Confidence 9 598754 677777788999865 888888899999999999999999999999999999999999778999999999
Q ss_pred ccCCCcEEEEeeeeeecHHHHHhh------cCCceeeeccCCCCCCCceEEEeeeeccCcccccccCCCCCeeEE--EEe
Q psy14657 472 KIKAGTFVCEYVGEILTHENALQR------TNQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEVS--RIN 543 (605)
Q Consensus 472 ~I~~G~~I~ey~Gevi~~~e~~~r------~~~~y~f~l~~~~~~~~~~~~IDa~~~GN~~RfiNHSC~PN~~~~--~~~ 543 (605)
+|++|+||+||+||||+.++++.| .+.+|+|.+++.. ..++|||+.+||++|||||||+||+.+. +++
T Consensus 160 ~I~~G~~I~EY~Gevi~~~ea~~R~~~y~~~~~~Y~f~l~~~~----~~~~IDa~~~GN~aRfiNHSC~PN~~~~~v~~~ 235 (300)
T 2r3a_A 160 KIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITYLFDLDYES----DEFTVDAARYGNVSHFVNHSCDPNLQVFNVFID 235 (300)
T ss_dssp CBCTTCEEEEECCEEEEHHHHHHHHHTCCHHHHHTEEECCSSC----SSEEEECSSEECGGGGCEECSSCSEEEEEEESS
T ss_pred cccCCCEeEEEeeEEecHHHHHHHHHHhhhccccEEEEeecCC----ceEEEecccccChHHheecCCCCCEEEEEEEec
Confidence 999999999999999999999877 2468999987632 3689999999999999999999999987 345
Q ss_pred cCCCCeeEEEEEEcCCCCCCCeEEEecCCCcccccc---hh--hhcCCCCeeeecCCCCCcccc
Q psy14657 544 NLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFT---SS--KRKKLVRNECRCGSSNCLGYY 602 (605)
Q Consensus 544 ~~d~~~~~i~~fA~rdI~~GEELT~dY~~~~~~~~~---~~--~~~~~~~~~C~Cgs~~Crg~l 602 (605)
+.|.+.++|+|||+|||++||||||||+.....+.. .+ .......+.|+|||++|||+|
T Consensus 236 ~~d~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~d~~~~~~~~~~~C~CGs~~Crg~l 299 (300)
T 2r3a_A 236 NLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYL 299 (300)
T ss_dssp CCCTTSCEEEEEESSCBCTTCEEEECGGGSSCC--------------CCCCBCCCCCTTCCSBC
T ss_pred cCCCCceEEEEEEccCCCCCCEEEEECCCCccccccccccccccccccCCCEeeCCCccccccC
Confidence 556678999999999999999999999986421110 00 011224689999999999987
|
| >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A | Back alignment and structure |
|---|
| >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* | Back alignment and structure |
|---|
| >3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} | Back alignment and structure |
|---|
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* | Back alignment and structure |
|---|
| >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* | Back alignment and structure |
|---|
| >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* | Back alignment and structure |
|---|
| >2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* | Back alignment and structure |
|---|
| >3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A | Back alignment and structure |
|---|
| >1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A | Back alignment and structure |
|---|
| >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* | Back alignment and structure |
|---|
| >3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} | Back alignment and structure |
|---|
| >2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A* | Back alignment and structure |
|---|
| >3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
| >3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A* | Back alignment and structure |
|---|
| >3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A* | Back alignment and structure |
|---|
| >1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2 | Back alignment and structure |
|---|
| >3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A* | Back alignment and structure |
|---|
| >4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2 | Back alignment and structure |
|---|
| >3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A | Back alignment and structure |
|---|
| >2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2 | Back alignment and structure |
|---|
| >1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2 | Back alignment and structure |
|---|
| >2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A* | Back alignment and structure |
|---|
| >1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A* | Back alignment and structure |
|---|
| >2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2 | Back alignment and structure |
|---|
| >2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2 | Back alignment and structure |
|---|
| >2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C | Back alignment and structure |
|---|
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
| >2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A* | Back alignment and structure |
|---|
| >2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A | Back alignment and structure |
|---|
| >2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A* | Back alignment and structure |
|---|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A | Back alignment and structure |
|---|
| >3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A | Back alignment and structure |
|---|
| >2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A | Back alignment and structure |
|---|
| >3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2 | Back alignment and structure |
|---|
| >3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2 | Back alignment and structure |
|---|
| >3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* | Back alignment and structure |
|---|
| >2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* | Back alignment and structure |
|---|
| >3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* | Back alignment and structure |
|---|
| >2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* | Back alignment and structure |
|---|
| >1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2 | Back alignment and structure |
|---|
| >2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A | Back alignment and structure |
|---|
| >2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 605 | ||||
| d1ml9a_ | 284 | b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T | 4e-48 | |
| d1ml9a_ | 284 | b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T | 8e-17 | |
| d1mvha_ | 269 | b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S | 2e-47 | |
| d1mvha_ | 269 | b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S | 2e-16 | |
| d2f69a2 | 171 | b.85.7.1 (A:194-364) Histone H3 K4-specific methyl | 8e-24 | |
| d1g6za_ | 70 | b.34.13.2 (A:) Histone methyltransferase clr4, chr | 8e-17 | |
| d2dnta1 | 66 | b.34.13.2 (A:8-73) Chromodomain protein, Y-like is | 2e-16 | |
| d2g46a1 | 119 | b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth | 6e-16 | |
| d1q3la_ | 52 | b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fru | 5e-14 | |
| d1guwa_ | 73 | b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mou | 1e-13 | |
| d2dnva1 | 52 | b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mo | 4e-13 | |
| d1pfba_ | 55 | b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Dr | 6e-12 | |
| d2dy7a1 | 81 | b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 | 3e-11 | |
| d2dy8a1 | 69 | b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 | 4e-11 | |
| d2b2ya1 | 80 | b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 | 3e-10 | |
| d1x3pa1 | 54 | b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidops | 5e-07 | |
| d2b2ya2 | 95 | b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 ( | 5e-07 |
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-clip superfamily: SET domain family: Histone lysine methyltransferases domain: Dim-5 species: Fungus (Neurospora crassa) [TaxId: 5141]
Score = 167 bits (424), Expect = 4e-48
Identities = 84/279 (30%), Positives = 125/279 (44%), Gaps = 39/279 (13%)
Query: 353 TLENNFDLESPPMDFTYIPSSVPRDGVVVTDDPV-IWCECRGNCVSNRDAC-CSDLNDAD 410
++ N D +F +I S+ V V D + C C + C C D D
Sbjct: 5 SIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMAPD 64
Query: 411 FAYS-------------------RRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKGIT 451
+ L+ PIYEC++ CAC + C NRVV++G T
Sbjct: 65 SDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRT 124
Query: 452 LPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTNQ--------TYCFN 503
+PL IF+TK +RGWGV+ P IK G FV Y+GEI+T E A +R + Y F
Sbjct: 125 VPLQIFRTK-DRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFA 183
Query: 504 LDFNQDSNSVA-------FVLDAARYGNVSHFINHSCDPNLEV--SRINNLNPDLHHVAL 554
LD D +S+ +D + FINHSCDPN+ + ++ + +H +AL
Sbjct: 184 LDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLAL 243
Query: 555 FAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRNECRC 593
FA +DI K EL+F Y++ + + + +C
Sbjct: 244 FAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKC 282
|
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 | Back information, alignment and structure |
|---|
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 | Back information, alignment and structure |
|---|
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 | Back information, alignment and structure |
|---|
| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
| >d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 70 | Back information, alignment and structure |
|---|
| >d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]} Length = 66 | Back information, alignment and structure |
|---|
| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 | Back information, alignment and structure |
|---|
| >d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 52 | Back information, alignment and structure |
|---|
| >d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]} Length = 73 | Back information, alignment and structure |
|---|
| >d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 | Back information, alignment and structure |
|---|
| >d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 55 | Back information, alignment and structure |
|---|
| >d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81 | Back information, alignment and structure |
|---|
| >d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 69 | Back information, alignment and structure |
|---|
| >d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 80 | Back information, alignment and structure |
|---|
| >d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 54 | Back information, alignment and structure |
|---|
| >d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| d1mvha_ | 269 | SET domain of Clr4 {Fission yeast (Schizosaccharom | 100.0 | |
| d1ml9a_ | 284 | Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | 100.0 | |
| d1mvha_ | 269 | SET domain of Clr4 {Fission yeast (Schizosaccharom | 99.92 | |
| d2f69a2 | 171 | Histone H3 K4-specific methyltransferase SET7/9 ca | 99.91 | |
| d1ml9a_ | 284 | Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | 99.87 | |
| d2g46a1 | 119 | Viral histone H3 Lysine 27 Methyltransferase {Para | 99.87 | |
| d1q3la_ | 52 | Heterochromatin protein 1, HP1 {Fruit fly (Drosoph | 99.61 | |
| d1pfba_ | 55 | Polycomb protein, Pc {Fruit fly (Drosophila melano | 99.61 | |
| d2dnta1 | 66 | Chromodomain protein, Y-like isoform {Human (Homo | 99.6 | |
| d2dnva1 | 52 | Chromobox protein homolog 8 {Mouse (Mus musculus) | 99.58 | |
| d1guwa_ | 73 | Heterochromatin protein 1, HP1 {Mouse (Mus musculu | 99.57 | |
| d1g6za_ | 70 | Histone methyltransferase clr4, chromo domain {Fis | 99.51 | |
| d2dy8a1 | 69 | ATP-dependent helicase CHD1 (Chromo domain protein | 99.28 | |
| d1x3pa1 | 54 | CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId | 99.27 | |
| d2b2ya1 | 80 | ATP-dependent helicase CHD1 (Chromo domain protein | 99.12 | |
| d2dy7a1 | 81 | ATP-dependent helicase CHD1 (Chromo domain protein | 98.82 | |
| d2h2ja2 | 261 | RuBisCo LSMT catalytic domain {Garden pea (Pisum s | 98.62 | |
| d2b2ya2 | 95 | ATP-dependent helicase CHD1 (Chromo domain protein | 98.42 | |
| d2huga1 | 55 | CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId | 98.03 | |
| d3deoa1 | 44 | CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId | 97.93 | |
| d2fmma1 | 68 | Heterochromatin protein 1, HP1 {Mouse (Mus musculu | 95.35 | |
| d2f5ka1 | 83 | Mortality factor 4-like protein 1, MRG15 {Human (H | 95.27 |
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-clip superfamily: SET domain family: Histone lysine methyltransferases domain: SET domain of Clr4 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=100.00 E-value=4.6e-51 Score=413.96 Aligned_cols=233 Identities=38% Similarity=0.691 Sum_probs=193.7
Q ss_pred HHHHHHHHhccCCCcceEEEcCCCCCCC-CCCcEEeeecccCCCccccC-CCCcccccCCC--CcCC--Cccc-cccc--
Q psy14657 336 REAEERYNAACETAARLTLENNFDLESP-PMDFTYIPSSVPRDGVVVTD-DPVIWCECRGN--CVSN--RDAC-CSDL-- 406 (605)
Q Consensus 336 ~~we~~~n~~~~~~~pi~~~N~vd~~~~-p~~F~yi~~~~~~~~~~~~~-~~~~gC~C~~~--C~~~--~~~C-c~~~-- 406 (605)
+.|++.|+.+ +.+||+++|+||++.+ |.+|+||+++++..++..++ ....||+|... |... .. | |...
T Consensus 15 ~~~~~~~~~~--~~~pi~~~N~vD~~~~P~~~F~yi~~~~~~~~~~~~~~~~~~gC~C~~~~~C~~~~~~~-C~C~~~~~ 91 (269)
T d1mvha_ 15 ELFRKKLREI--EGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSR-CECLDDLD 91 (269)
T ss_dssp HHHHHHHHTS--SSSCEEEECSSCCCCCSCCCSEECSSCEECTTCCCCCGGGCCCCCCCCSSSSCTTCTTT-CSSSTTCC
T ss_pred HHHHHHHhhC--CCCCcEEEeCCCCCCCCCCCcEEeeccccCCCCCcCCccccCCCCCCCCCCcCCCCCcc-eecccccC
Confidence 3345555554 4689999999999874 45899999999999875443 23679999753 4332 22 3 3332
Q ss_pred CCCCcceecccCcccccCCCceEecCCCCCCCCCCcCcccccCCCcCEEEEEeCCCCceeEEcCCccCCCcEEEEeeeee
Q psy14657 407 NDADFAYSRRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEI 486 (605)
Q Consensus 407 ~~~~~~y~~~~~~l~~~~~~~i~EC~~~C~C~~~C~Nrv~q~g~~~~l~i~~t~~~kG~Gv~A~~~I~~G~~I~ey~Gev 486 (605)
....++|+.. +++....+.+||||++.|+|+.+|.||++|+|.+.+|+|++| +.+||||||+++|++|+||+||+|||
T Consensus 92 ~~~~~~~~~~-~rl~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~~leV~~t-~~~G~GvfA~~~I~kGt~I~eY~Gev 169 (269)
T d1mvha_ 92 EPTHFAYDAQ-GRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKT-KEKGWGVRSLRFAPAGTFITCYLGEV 169 (269)
T ss_dssp SSCCCSBCTT-SSBCTTCCSEEECCCTTSCSCTTCTTCTGGGCCCSCEEEEEC-SSSSEEEEESSCBCTTCEEEECCCEE
T ss_pred CCCccccccC-CccccCcCCeEEECCCCCCCCCCCCCeecCCCCccCEEEEEc-CCCCeEEEeCcccCCCceEEEecceE
Confidence 3456788754 888888999999999999999999999999999999999999 78999999999999999999999999
Q ss_pred ecHHHHHhh------cCCceeeeccCCCCCCCceEEEeeeeccCcccccccCCCCCeeEE--EEecCCCCeeEEEEEEcC
Q psy14657 487 LTHENALQR------TNQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEVS--RINNLNPDLHHVALFAKR 558 (605)
Q Consensus 487 i~~~e~~~r------~~~~y~f~l~~~~~~~~~~~~IDa~~~GN~~RfiNHSC~PN~~~~--~~~~~d~~~~~i~~fA~r 558 (605)
++.+++.+| .+.+|+|++.+.. ....++|||+.+||++|||||||+||+.++ ++++.+...++|+|||+|
T Consensus 170 i~~~e~~~R~~~y~~~~~~~~~~l~~~~--~~~~~~iDa~~~GN~aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~r 247 (269)
T d1mvha_ 170 ITSAEAAKRDKNYDDDGITYLFDLDMFD--DASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIK 247 (269)
T ss_dssp EEHHHHHHHHTTCCSCSCCCEEEECSSC--SSSCEEEECSSEECGGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESS
T ss_pred EcHHHHHHHHHhHhhcCCcchhheeccc--ccccceeeeeecCcceEEeecCCCCCcEEEEEEecCCcCccceEEEEECC
Confidence 999999887 4467889887654 345799999999999999999999999998 555667788999999999
Q ss_pred CCCCCCeEEEecCCCcc
Q psy14657 559 DINKNEELSFCYLDLTK 575 (605)
Q Consensus 559 dI~~GEELT~dY~~~~~ 575 (605)
||++||||||||++..+
T Consensus 248 dI~~GEELt~DYG~~~d 264 (269)
T d1mvha_ 248 DIQPLEELTFDYAGAKD 264 (269)
T ss_dssp CBCTTCBCEECCCTTSS
T ss_pred ccCCCCEEEEecCCCcC
Confidence 99999999999998653
|
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
| >d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
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| >d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
| >d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2huga1 b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d3deoa1 b.34.13.2 (A:85-128) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2fmma1 b.34.13.2 (A:108-175) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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