Psyllid ID: psy14661

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MLAGMFMKKGNEACRQAAEKCALLAKPNLKDALKKWEEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVLPE
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccEEEcccccHHHHHHcccccccccEEEcccccccEEEcccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccHHHHHHccccccccEEEEcccccccccccHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHcEEEEccccccEEccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHHHcccHHHHHHHHcccHHHcccHHHHHccEEEEEcccccccHHHHHHHHccccHHHEEEccccHHcccccHHHHHHHHHHcccccEcccccccc
Coil and Loop (DISEMBL)
MLAGMFMKKGNEACRQAAEKCALLAKPNLKDALKKWeeengipiseakeVGLQMQFIEKMDSSLAvltnceklslsTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFvklgecpslidlvfcgnplvegmddplyksevkkrlpnlkkldgevlpe
Flexible Loop (DISEMBL)
MLAGMFMKKGNEACRQAAEKCALLAKPNLKDALKKWEEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLyksevkkrlpnlkkldgevlpe
Low Complexity Region (SEG)
MLAGMFMKKGNEACRQAAEKCALLAKPNLKDALKKWEEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINglsglkklkvlslARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVLPE
Disordered region (IsUnstruct)
*******************KCALLAKPNLKDALKKWEEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD*L**********************
Disordered Region (DISOPRED)
**AG*****G*****************NLKDALKKWEEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVLP*
Disordered Region (DISEMBL)
MLAGMFMKKGNEACRQAAEKCALLAKPNLKDALKKWEEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVLPE
Disordered Region (DISPRO)
MLAGMFMKKGNEACRQAAEKCALLAKPNLKDALKKWEEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLAGMFMKKGNEACRQAAEKCALLAKPNLKDALKKWEEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVLPE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q4LDG9	190	Dynein light chain 1, axo	yes	N/A	0.836	0.889	0.633	3e-52
Q05A62	190	Dynein light chain 1, axo	yes	N/A	0.836	0.889	0.633	5e-52
Q2KID4	190	Dynein light chain 1, axo	yes	N/A	0.836	0.889	0.627	6e-52
Q641R9	192	Dynein light chain 1, axo	N/A	N/A	0.836	0.880	0.656	6e-52
Q28G94	192	Dynein light chain 1, axo	yes	N/A	0.836	0.880	0.656	8e-52
Q6DHB1	192	Dynein light chain 1, axo	yes	N/A	0.836	0.880	0.639	4e-51
Q8T888	190	Dynein light chain 1, axo	yes	N/A	0.841	0.894	0.601	4e-46
Q9XHH2	198	Dynein light chain 1, axo	N/A	N/A	0.836	0.853	0.485	2e-36
P22194	332	Protein phosphatase 1 reg	yes	N/A	0.722	0.439	0.304	3e-13
Q9D5E4	523	Leucine-rich repeat-conta	no	N/A	0.757	0.292	0.341	1e-12

>sp|Q4LDG9|DNAL1_HUMAN Dynein light chain 1, axonemal OS=Homo sapiens GN=DNAL1 PE=1 SV=1

 Score =  204 bits (519), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/172 (63%), Positives = 132/172 (76%), Gaps = 3/172 (1%)

Query: 29  LKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKINGL 86
           +K+AL +WEE+ G   SEAKE+ L  Q   IEKMD+SL++L NCEKLSLSTN IEKI  L
Sbjct: 7   IKEALARWEEKTGQRPSEAKEIKLYAQIPPIEKMDASLSMLANCEKLSLSTNCIEKIANL 66

Query: 87  SGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNL 146
           +GLK L++LSL RNNIK+  GLE + +TLEELW+SYN+IEK KGI +M+KLK+LYMSNNL
Sbjct: 67  NGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIEKLKGIHIMKKLKILYMSNNL 126

Query: 147 VKEWAEFVKLGECPSLIDLVFCGNPLVEGMD-DPLYKSEVKKRLPNLKKLDG 197
           VK+WAEFVKL E P L DLVF GNPL E    +  +  E  KR+P LKKLDG
Sbjct: 127 VKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEEATKRVPKLKKLDG 178

Homo sapiens (taxid: 9606)

>sp|Q05A62|DNAL1_MOUSE Dynein light chain 1, axonemal OS=Mus musculus GN=Dnal1 PE=2 SV=2

 Score =  203 bits (517), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 109/172 (63%), Positives = 131/172 (76%), Gaps = 3/172 (1%)

Query: 29  LKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKINGL 86
           +K+AL +WEE+ G   S+AKE+ L  Q   IEKMD+SL+ L NCEKLSLSTN IEKI  L
Sbjct: 7   IKEALSRWEEKTGQKPSDAKEIKLYAQIPPIEKMDASLSTLGNCEKLSLSTNCIEKIANL 66

Query: 87  SGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNL 146
           +GLK L++LSL RNNIK+  GLE + ETLEELW+SYN+IEK KGI VM+KLK+LYMSNNL
Sbjct: 67  NGLKNLRILSLGRNNIKNLNGLEAVGETLEELWISYNFIEKLKGIHVMKKLKILYMSNNL 126

Query: 147 VKEWAEFVKLGECPSLIDLVFCGNPLVEGMD-DPLYKSEVKKRLPNLKKLDG 197
           VK+WAEF+KL E P L DLVF GNPL E    +  +  E  KR+P LKKLDG
Sbjct: 127 VKDWAEFLKLAELPCLEDLVFVGNPLEEKHSAEGNWIDEATKRVPKLKKLDG 178

Mus musculus (taxid: 10090)

>sp|Q2KID4|DNAL1_BOVIN Dynein light chain 1, axonemal OS=Bos taurus GN=DNAL1 PE=2 SV=1

 Score =  203 bits (517), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 108/172 (62%), Positives = 131/172 (76%), Gaps = 3/172 (1%)

Query: 29  LKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKINGL 86
           +K+AL +WEE+     SEA+E+ L  Q   IEKMD+SL+ L+NCEKLSLSTN IEKI  L
Sbjct: 7   IKEALARWEEKTSQKPSEAREIKLYAQIPPIEKMDASLSTLSNCEKLSLSTNCIEKIANL 66

Query: 87  SGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNL 146
           +GLK L++LSL RNNIK+  GLE + +TLEELW+SYN+IEK KGI VM+KLK+LYMSNNL
Sbjct: 67  NGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIEKLKGIHVMKKLKILYMSNNL 126

Query: 147 VKEWAEFVKLGECPSLIDLVFCGNPLVEGMD-DPLYKSEVKKRLPNLKKLDG 197
           VK+WAEFVKL E P L DLVF GNPL E    +  +  E  KR+P LKKLDG
Sbjct: 127 VKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAEGNWVEEATKRVPKLKKLDG 178

Bos taurus (taxid: 9913)

>sp|Q641R9|DNAL1_XENLA Dynein light chain 1, axonemal OS=Xenopus laevis GN=dnal1 PE=2 SV=1

 Score =  203 bits (517), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 113/172 (65%), Positives = 128/172 (74%), Gaps = 3/172 (1%)

Query: 29  LKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKINGL 86
           +K+AL KWEE  G    EAKEV L  Q   +EKMD+SL+ L NCEKLSLSTN IEKI  L
Sbjct: 7   IKEALAKWEERTGQKAGEAKEVKLYAQIPPLEKMDASLSTLVNCEKLSLSTNCIEKIANL 66

Query: 87  SGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNL 146
           +GLK LK+LSL RNNIK+  GLE + ETLEELW+SYN IEK KGI VM+KLKVLYMSNNL
Sbjct: 67  NGLKYLKILSLGRNNIKNLNGLEAVGETLEELWISYNLIEKLKGIHVMKKLKVLYMSNNL 126

Query: 147 VKEWAEFVKLGECPSLIDLVFCGNPLVE-GMDDPLYKSEVKKRLPNLKKLDG 197
           VK+WAEF KLGE P L D+VF GNPL E    +  +  E  KRLP LKKLDG
Sbjct: 127 VKDWAEFSKLGELPLLGDIVFVGNPLEEKHTAEGNWMEEAVKRLPKLKKLDG 178

Xenopus laevis (taxid: 8355)

>sp|Q28G94|DNAL1_XENTR Dynein light chain 1, axonemal OS=Xenopus tropicalis GN=dnal1 PE=2 SV=1

 Score =  203 bits (516), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 113/172 (65%), Positives = 128/172 (74%), Gaps = 3/172 (1%)

Query: 29  LKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKINGL 86
           +K+AL KWEE  G    EAKEV L  Q   IEKMD+SL+ L NCEKLSLSTN IEKI  L
Sbjct: 7   IKEALAKWEERTGQKAGEAKEVKLYAQIPPIEKMDASLSTLVNCEKLSLSTNCIEKIANL 66

Query: 87  SGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNL 146
           +GLK L++LSL RNNIK+  GLE + ETLEELW+SYN IEK KGI VM+KLKVLYMSNNL
Sbjct: 67  NGLKFLRILSLGRNNIKNLNGLEAVGETLEELWISYNLIEKLKGIHVMKKLKVLYMSNNL 126

Query: 147 VKEWAEFVKLGECPSLIDLVFCGNPLVE-GMDDPLYKSEVKKRLPNLKKLDG 197
           VK+WAEF KLGE P L D+VF GNPL E    +  +  E  KRLP LKKLDG
Sbjct: 127 VKDWAEFSKLGELPLLEDMVFVGNPLEERHTAEGNWLEEAVKRLPKLKKLDG 178

Xenopus tropicalis (taxid: 8364)

>sp|Q6DHB1|DNAL1_DANRE Dynein light chain 1, axonemal OS=Danio rerio GN=dnal1 PE=2 SV=1

 Score =  200 bits (509), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 110/172 (63%), Positives = 129/172 (75%), Gaps = 3/172 (1%)

Query: 29  LKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKINGL 86
           +K+AL KWEE+ G   ++A  V L  Q   IEKMD+SL+ L NCE+LSLSTN IEKI  L
Sbjct: 7   IKEALVKWEEKTGEKANDATAVKLYGQIPPIEKMDASLSNLVNCERLSLSTNCIEKIANL 66

Query: 87  SGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNL 146
           +GLK LK+LSL RNNIK+  GLE + +TLEELW+SYN IEK KGI VM+KLKVLYMSNNL
Sbjct: 67  NGLKNLKILSLGRNNIKNLNGLEAVGDTLEELWISYNLIEKLKGIHVMKKLKVLYMSNNL 126

Query: 147 VKEWAEFVKLGECPSLIDLVFCGNPLVEGMD-DPLYKSEVKKRLPNLKKLDG 197
           VKEW EF+KL + PSL+DLVF GNPL E    D  +  E  KRLP LKKLDG
Sbjct: 127 VKEWGEFLKLADLPSLVDLVFVGNPLEEKYSADGNWIEEATKRLPKLKKLDG 178

Danio rerio (taxid: 7955)

>sp|Q8T888|DNAL1_CIOIN Dynein light chain 1, axonemal OS=Ciona intestinalis GN=DNAL1 PE=2 SV=1

 Score =  184 bits (467), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 104/173 (60%), Positives = 126/173 (72%), Gaps = 3/173 (1%)

Query: 28  NLKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKING 85
           ++K+AL KWEE+N    +EAKEV L      IEKMD+SL+ LT CEKLSLSTN IEKI  
Sbjct: 6   SIKEALSKWEEKNSEKAAEAKEVKLYQMLPPIEKMDASLSTLTVCEKLSLSTNCIEKIAN 65

Query: 86  LSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNN 145
           L+GLK LK+LSL RNNIK+  GLE + ++LEELW+SYN IEK KGI V++KLKVL MSNN
Sbjct: 66  LNGLKNLKILSLGRNNIKNLNGLEAVGDSLEELWISYNSIEKLKGIHVLKKLKVLLMSNN 125

Query: 146 LVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD-DPLYKSEVKKRLPNLKKLDG 197
            VK+W EF KL E P L++LVF GNPL E    +  ++  V K L  LKKLDG
Sbjct: 126 QVKDWGEFNKLQELPVLMELVFVGNPLEEKHSAEGDWQDRVTKSLKALKKLDG 178

Ciona intestinalis (taxid: 7719)

>sp|Q9XHH2|DNAL1_CHLRE Dynein light chain 1, axonemal OS=Chlamydomonas reinhardtii GN=LC1 PE=1 SV=1

 Score =  152 bits (383), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/175 (48%), Positives = 112/175 (64%), Gaps = 6/175 (3%)

Query: 29  LKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKINGL 86
           +KDA++ +EE   +  +EA++V L      IEKMD++L+ L  C+ L+LSTN IEKI+ L
Sbjct: 7   IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSL 66

Query: 87  SGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNL 146
           SG++ L++LSL RN IK    L+ +A+TLEELW+SYN I    GI  +  L+VLYMSNN 
Sbjct: 67  SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK 126

Query: 147 VKEWAEFVKLGECPSLIDLVFCGNPLV----EGMDDPLYKSEVKKRLPNLKKLDG 197
           +  W E  KL     L DL+  GNPL     E      Y+ EV KRLPNLKKLDG
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181

Associates with the gamma heavy chain in the outer arm dynein. May target p45 polypeptide (an 45 kDa axonemal component) to the motor domain of the gamma heavy chain dynein.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|P22194|SDS22_SCHPO Protein phosphatase 1 regulatory subunit SDS22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sds22 PE=1 SV=2

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 28/174 (16%)

Query: 51  GLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEP 110
           G +++ IE +D+    L N EKL +  N I K      L+KL +LS+  N I  F  L  
Sbjct: 157 GNKIRVIENLDT----LVNLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRITQFENLAC 212

Query: 111 LAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKE-------------WAEFVKLG 157
           L+  L EL+VS+N +    GI V+  L++L +SNN++K              WA   +L 
Sbjct: 213 LSHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLAGLKNLVELWASNNELS 272

Query: 158 ECPSLID----------LVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVLP 201
               + D          + F GNPL +  +  +Y+++V+  LP L+++D  ++P
Sbjct: 273 SFQEIEDELSGLKKLETVYFEGNPL-QKTNPAVYRNKVRLCLPQLRQIDATIIP 325

Essential for the mitotic metaphase/anaphase transition. Positively modulates protein phosphatase-1. Possibly by forming a repeating helical rod that is capable of enhancing a PP1-dependent dephosphorylation activity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9D5E4|LRC48_MOUSE Leucine-rich repeat-containing protein 48 OS=Mus musculus GN=Lrrc48 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 5/158 (3%)

Query: 39  ENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLA 98
           + GI   +   + L  Q I ++D+ L    N +KL L+ N+IE+I GL+ L  L  L L+
Sbjct: 37  QEGILFKDVLSLQLDFQNILRIDN-LWQFENLKKLQLNNNIIERIEGLTNLIHLVWLDLS 95

Query: 99  RNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGE 158
            NNI++  GL+ L   LE+L +S N I K   +  + KL+VL + NN +      + L  
Sbjct: 96  FNNIEAIEGLDTLV-NLEDLSLSNNRISKVDSLDALVKLQVLSLGNNQISNMMNIIYLRR 154

Query: 159 CPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
            P L  L   GNP+ E  +   YK  +   L +L  LD
Sbjct: 155 FPCLRTLSLAGNPVSEAEE---YKMFIYAYLSDLVYLD 189

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
91087289	187	PREDICTED: similar to dynein light chain	0.866	0.935	0.642	9e-57
332374904	186	unknown [Dendroctonus ponderosae]	0.866	0.940	0.631	2e-56
242025574	200	dynein light chain, putative [Pediculus	0.846	0.855	0.670	2e-55
156546228	208	PREDICTED: dynein light chain 1, axonema	0.836	0.812	0.627	2e-54
242023412	181	dynein light chain, putative [Pediculus	0.846	0.944	0.630	1e-53
195475426	182	GE21255 [Drosophila yakuba] gi|194176086	0.866	0.961	0.601	2e-53
383858315	205	PREDICTED: dynein light chain 1, axonema	0.861	0.848	0.627	2e-53
19921412	182	CG10839, isoform A [Drosophila melanogas	0.866	0.961	0.589	2e-53
156400122	193	predicted protein [Nematostella vectensi	0.836	0.875	0.662	3e-53
380018212	200	PREDICTED: dynein light chain 1, axonema	0.846	0.855	0.641	3e-53

>gi|91087289|ref|XP_975555.1| PREDICTED: similar to dynein light chain [Tribolium castaneum] gi|270010590|gb|EFA07038.1| hypothetical protein TcasGA2_TC010012 [Tribolium castaneum]

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 115/179 (64%), Positives = 149/179 (83%), Gaps = 4/179 (2%)

Query: 24  LAKPN-LKDALKKWEEEN-GIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNM 79
           ++KP  +K+A+KKWEE++ G  I++A++VG Q Q+  IEKMD+SL+ LT C KLSLSTNM
Sbjct: 1   MSKPTTIKEAIKKWEEKHPGKNIADAEDVGFQFQWPPIEKMDNSLSALTKCRKLSLSTNM 60

Query: 80  IEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKV 139
           IEKI G+S LK L++LSL RN IKSFAGLE + ++LEELW+SYN+IEK KG+ V++KLKV
Sbjct: 61  IEKIAGISSLKNLRILSLGRNYIKSFAGLEGVGDSLEELWISYNFIEKMKGVHVLKKLKV 120

Query: 140 LYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGE 198
           LYMSNN+VKEW+EF+KL E PSL DL+F GNPL E M++ ++K+E  KRLPNLKKLDGE
Sbjct: 121 LYMSNNMVKEWSEFMKLQELPSLEDLLFVGNPLYESMEESVWKNEAIKRLPNLKKLDGE 179

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374904|gb|AEE62593.1| unknown [Dendroctonus ponderosae]

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/179 (63%), Positives = 146/179 (81%), Gaps = 4/179 (2%)

Query: 24  LAKPN-LKDALKKWEEEN-GIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNM 79
           ++KP  +KDA+K+WEE++ G  I+EA EVG Q Q+  IEKMD+SL+ L  C+KLSLSTNM
Sbjct: 1   MSKPTTIKDAIKRWEEKHPGEQIAEASEVGFQFQWPPIEKMDNSLSALQKCKKLSLSTNM 60

Query: 80  IEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKV 139
           IEKI G+S LK LK+LSL RN IKSF+GLE +AETLEELW+SYN+IEK KG+ V++KLKV
Sbjct: 61  IEKIAGISALKNLKILSLGRNYIKSFSGLEGVAETLEELWISYNFIEKVKGVQVLKKLKV 120

Query: 140 LYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGE 198
           LY+ NN++K+W+E+VKL E P L DL+F GNPL + MD+ ++K E  KRLPNL+KLDGE
Sbjct: 121 LYIGNNMIKDWSEYVKLQELPCLEDLLFVGNPLYDSMDEAVWKVEATKRLPNLRKLDGE 179

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242025574|ref|XP_002433199.1| dynein light chain, putative [Pediculus humanus corporis] gi|212518740|gb|EEB20461.1| dynein light chain, putative [Pediculus humanus corporis]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 116/173 (67%), Positives = 138/173 (79%), Gaps = 2/173 (1%)

Query: 28  NLKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKING 85
           ++K+ALK+WEE+N    SEAKEV L  Q+  IEKMD+SLA LTNC +LSLSTNMIEKI+G
Sbjct: 6   SIKEALKRWEEKNNKSASEAKEVFLCFQWPPIEKMDNSLATLTNCTRLSLSTNMIEKISG 65

Query: 86  LSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNN 145
           +  LK LK+LSL RN IKSF GLE L +TLEELW+SYN IEK KGI V+R LKVLY+SNN
Sbjct: 66  VGTLKNLKILSLGRNYIKSFTGLEALGDTLEELWISYNLIEKLKGINVLRNLKVLYISNN 125

Query: 146 LVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGE 198
           L++EW EF KL E P L DL+F GNPL E M++ ++K EV KRLPNLKKLDGE
Sbjct: 126 LIREWPEFNKLQELPLLEDLLFVGNPLQESMEENIWKIEVPKRLPNLKKLDGE 178

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546228|ref|XP_001604894.1| PREDICTED: dynein light chain 1, axonemal-like [Nasonia vitripennis]

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/172 (62%), Positives = 134/172 (77%), Gaps = 3/172 (1%)

Query: 30  KDALKKWEEENG-IPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKINGL 86
           KDA+++WEEENG +  ++A EV L  Q+  IE+MD+SLA L  CEKLSLSTNMIEKI G+
Sbjct: 10  KDAIRRWEEENGGMEAAQATEVSLNFQWPPIERMDNSLAALVKCEKLSLSTNMIEKIAGV 69

Query: 87  SGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNL 146
             LKKLK+LS+ RN IK F GLE L +TLEELW+SYN IEK KG+  +R LKVLY+SNNL
Sbjct: 70  GSLKKLKILSVGRNQIKGFTGLETLGDTLEELWISYNAIEKLKGVNALRNLKVLYVSNNL 129

Query: 147 VKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGE 198
           VKEW EF +L E P+L DLVF GNP+ EG++   ++ EV +RLPNL+KLDGE
Sbjct: 130 VKEWNEFARLQEMPNLQDLVFAGNPITEGLETEQWRMEVARRLPNLEKLDGE 181

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023412|ref|XP_002432128.1| dynein light chain, putative [Pediculus humanus corporis] gi|212517502|gb|EEB19390.1| dynein light chain, putative [Pediculus humanus corporis]

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 109/173 (63%), Positives = 136/173 (78%), Gaps = 2/173 (1%)

Query: 28  NLKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKING 85
           +LKDA K WEE+    ISEAKEV L  Q   IEK+D+SL++L +CEKLSLS+N IEKI G
Sbjct: 4   SLKDAFKVWEEKTNANISEAKEVILSFQNPPIEKLDNSLSILVHCEKLSLSSNSIEKITG 63

Query: 86  LSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNN 145
            + LK LK+LSL+RN IKSF+GLEPL +TLE+LW+SYN I+K KG+ + + LKVLYMSNN
Sbjct: 64  FNNLKNLKILSLSRNVIKSFSGLEPLGDTLEQLWISYNLIDKIKGVSIFKALKVLYMSNN 123

Query: 146 LVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGE 198
           LVK+W+EF KL E P L DLVF GNPLVE +D+  ++ E  +RLP+LKKLDGE
Sbjct: 124 LVKDWSEFQKLQEIPLLEDLVFLGNPLVEQLDEEYWRKEAARRLPSLKKLDGE 176

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195475426|ref|XP_002089985.1| GE21255 [Drosophila yakuba] gi|194176086|gb|EDW89697.1| GE21255 [Drosophila yakuba]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/178 (60%), Positives = 137/178 (76%), Gaps = 3/178 (1%)

Query: 24  LAKP-NLKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMI 80
           ++KP NLKDAL KWE+ N  P   AKE+GLQ Q+  IEKMD  L  LT C+KLSLS+NMI
Sbjct: 1   MSKPTNLKDALAKWEDRNKQPAITAKEIGLQFQYPPIEKMDPILNTLTECQKLSLSSNMI 60

Query: 81  EKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVL 140
           EKI G+SG+K LKVLSLARNN+K+  G+EPLA+TLEELWVSYN IEK K +  M+ L+V 
Sbjct: 61  EKITGISGMKNLKVLSLARNNLKTLNGIEPLADTLEELWVSYNNIEKIKPLESMKALRVF 120

Query: 141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGE 198
           Y+S N++K+WAEF+++G  P+L ++ F GNPL E MD   + +E  +RLPN+KKLDGE
Sbjct: 121 YISFNMIKDWAEFMRMGVPPNLGEITFVGNPLNENMDPSAFTAEAVRRLPNMKKLDGE 178

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858315|ref|XP_003704647.1| PREDICTED: dynein light chain 1, axonemal-like [Megachile rotundata]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/177 (62%), Positives = 134/177 (75%), Gaps = 3/177 (1%)

Query: 25  AKPNL-KDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIE 81
           AKP   K+A+++WEEENG   S AKEV L  Q+  IEKMD++LA L NCEKLSLSTNMIE
Sbjct: 4   AKPTTCKEAIRRWEEENGQEASTAKEVILSFQWPPIEKMDNALATLVNCEKLSLSTNMIE 63

Query: 82  KINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLY 141
           KI G+  LK L +LSL RN IKSF+GLE L +TL ELW+SYN IEK KGI  MR L+VLY
Sbjct: 64  KIAGIGTLKNLTILSLGRNLIKSFSGLEALGDTLRELWISYNLIEKMKGINYMRNLRVLY 123

Query: 142 MSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGE 198
           MSNNLV+EW EF +L E  +L DL+F GNPL E M+   +++EV +RLP L+KLDGE
Sbjct: 124 MSNNLVREWHEFNRLQELANLQDLLFVGNPLYESMEVEQWRAEVARRLPTLEKLDGE 180

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19921412|ref|NP_609776.1| CG10839, isoform A [Drosophila melanogaster] gi|386769672|ref|NP_001246039.1| CG10839, isoform B [Drosophila melanogaster] gi|7298265|gb|AAF53496.1| CG10839, isoform A [Drosophila melanogaster] gi|68051497|gb|AAY85012.1| IP06404p [Drosophila melanogaster] gi|220951374|gb|ACL88230.1| CG10839-PA [synthetic construct] gi|383291510|gb|AFH03713.1| CG10839, isoform B [Drosophila melanogaster]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/178 (58%), Positives = 136/178 (76%), Gaps = 3/178 (1%)

Query: 24  LAKPN-LKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMI 80
           ++KP  LKDAL KWE+ N  P + A E+GLQ Q+  IEKMD  L  LT C+KLSLS+NMI
Sbjct: 1   MSKPTTLKDALAKWEDRNKQPAATATEIGLQFQYPPIEKMDPILNSLTECQKLSLSSNMI 60

Query: 81  EKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVL 140
           EKI G+SG+K LKVLSLARNN+K+  G+EPLA+TLEELWVSYN IEKTK +  M+ L+V 
Sbjct: 61  EKITGISGMKNLKVLSLARNNLKTLNGIEPLADTLEELWVSYNNIEKTKPLESMKALRVF 120

Query: 141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGE 198
           Y+S N++K+W EF+++G  P+L ++ F GNPL E MD   + +E  +RLPN+KKLDGE
Sbjct: 121 YISFNMIKDWTEFMRMGVPPNLSEITFVGNPLNENMDQSAFTAEAVRRLPNMKKLDGE 178

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156400122|ref|XP_001638849.1| predicted protein [Nematostella vectensis] gi|156225973|gb|EDO46786.1| predicted protein [Nematostella vectensis]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 114/172 (66%), Positives = 134/172 (77%), Gaps = 3/172 (1%)

Query: 29  LKDALKKWEEENGIPISEAKEVGL--QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGL 86
           +KDAL KWEE+NG   SE+KE+ L  QM  +EKMD+SL+ L+NCEKLSLSTN IEKI  L
Sbjct: 7   IKDALSKWEEKNGAKASESKEIKLIAQMPPVEKMDASLSTLSNCEKLSLSTNCIEKIANL 66

Query: 87  SGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNL 146
           +GLK LKVLSL RNNIK+  GLE +A+TLEELW+SYN IEK KG+GV++KLKVLYMSNN 
Sbjct: 67  NGLKNLKVLSLGRNNIKNLNGLEAVADTLEELWISYNNIEKLKGVGVLKKLKVLYMSNNS 126

Query: 147 VKEWAEFVKLGECPSLIDLVFCGNPLVE-GMDDPLYKSEVKKRLPNLKKLDG 197
           VK W EF KLGE P+L DL+F GNPL E    D  ++ E  KRLP LKKLDG
Sbjct: 127 VKAWEEFTKLGELPALEDLLFIGNPLEEKHSSDGDWRGEATKRLPKLKKLDG 178

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|380018212|ref|XP_003693028.1| PREDICTED: dynein light chain 1, axonemal-like [Apis florea]

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/173 (64%), Positives = 136/173 (78%), Gaps = 2/173 (1%)

Query: 30  KDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKINGLS 87
           K+A++ WEEEN    S AKE+ L  ++  IEKMD+SLAVL NCEKLSLSTNMIEKI G+ 
Sbjct: 10  KEAIRMWEEENKQDASTAKEMILSFRWPPIEKMDNSLAVLVNCEKLSLSTNMIEKIAGIG 69

Query: 88  GLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLV 147
            LK LK+L+L RN IKSFAGLEPL +TLEELW+SYN IEK KGI  M+ L+VLYMSNNLV
Sbjct: 70  TLKNLKILALGRNLIKSFAGLEPLGDTLEELWISYNLIEKMKGINAMKNLRVLYMSNNLV 129

Query: 148 KEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVL 200
           K+W EF +L E  +L DL+F GNPL E ++  ++KSEV KRLP L+KLDGE++
Sbjct: 130 KDWHEFNRLQELTNLRDLLFVGNPLYESLEVEIWKSEVAKRLPMLEKLDGELI 182

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
FB|FBgn0028858	182	CG10839 [Drosophila melanogast	0.866	0.961	0.533	1e-45
MGI|MGI:1921462	190	Dnalc1 "dynein, axonemal, ligh	0.861	0.915	0.578	1e-45
ZFIN|ZDB-GENE-040801-178	215	dnal1 "dynein, axonemal, light	0.965	0.906	0.530	5.6e-45
GENEDB_PFALCIPARUM|MAL8P1.46	199	MAL8P1.46 "outer arm dynein li	0.886	0.899	0.379	1.2e-28
UNIPROTKB|Q8IB59	199	MAL8P1.46 "Outer arm dynein li	0.886	0.899	0.379	1.2e-28
FB|FBgn0010747	569	Srp54k "Signal recognition par	0.341	0.121	0.478	3.9e-14
MGI|MGI:1921915	523	Lrrc48 "leucine rich repeat co	0.762	0.294	0.301	7.5e-11
RGD|1309150	523	Lrrc48 "leucine rich repeat co	0.762	0.294	0.301	7.5e-11
UNIPROTKB|E2RI69	522	LRRC48 "Uncharacterized protei	0.757	0.293	0.322	9.6e-11
UNIPROTKB|F1N0Q0	522	LRRC48 "Uncharacterized protei	0.762	0.295	0.301	4.3e-10

FB|FBgn0028858 CG10839 [Drosophila melanogaster (taxid:7227)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 95/178 (53%), Positives = 124/178 (69%)

Query:    24 LAKPN-LKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMI 80
             ++KP  LKDAL KWE+ N  P + A E+GLQ Q+  IEKMD  L  LT C+KLSLS+NMI
Sbjct:     1 MSKPTTLKDALAKWEDRNKQPAATATEIGLQFQYPPIEKMDPILNSLTECQKLSLSSNMI 60

Query:    81 EKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVL 140
             EKI              ARNN+K+  G+EPLA+TLEELWVSYN IEKTK +  M+ L+V 
Sbjct:    61 EKITGISGMKNLKVLSLARNNLKTLNGIEPLADTLEELWVSYNNIEKTKPLESMKALRVF 120

Query:   141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGE 198
             Y+S N++K+W EF+++G  P+L ++ F GNPL E MD   + +E  +RLPN+KKLDGE
Sbjct:   121 YISFNMIKDWTEFMRMGVPPNLSEITFVGNPLNENMDQSAFTAEAVRRLPNMKKLDGE 178

GO:0005875 "microtubule associated complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

MGI|MGI:1921462 Dnalc1 "dynein, axonemal, light chain 1" [Mus musculus (taxid:10090)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 103/178 (57%), Positives = 123/178 (69%)

Query:    24 LAKPN-LKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMI 80
             +AK   +K+AL +WEE+ G   S+AKE+ L  Q   IEKMD+SL+ L NCEKLSLSTN I
Sbjct:     1 MAKATTIKEALSRWEEKTGQKPSDAKEIKLYAQIPPIEKMDASLSTLGNCEKLSLSTNCI 60

Query:    81 EKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVL 140
             EKI               RNNIK+  GLE + ETLEELW+SYN+IEK KGI VM+KLK+L
Sbjct:    61 EKIANLNGLKNLRILSLGRNNIKNLNGLEAVGETLEELWISYNFIEKLKGIHVMKKLKIL 120

Query:   141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD-DPLYKSEVKKRLPNLKKLDG 197
             YMSNNLVK+WAEF+KL E P L DLVF GNPL E    +  +  E  KR+P LKKLDG
Sbjct:   121 YMSNNLVKDWAEFLKLAELPCLEDLVFVGNPLEEKHSAEGNWIDEATKRVPKLKKLDG 178

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040801-178 dnal1 "dynein, axonemal, light chain 1" [Danio rerio (taxid:7955)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 105/198 (53%), Positives = 125/198 (63%)

Query:     3 AGMFMKKGNEACRQAAEKCALLAKPNLKDALKKWEEENGIPISEAKEVGLQMQF--IEKM 60
             A +  +   E    A  K  +     +K+AL KWEE+ G   ++A  V L  Q   IEKM
Sbjct:     4 ASLCARAVREGSSIATAKNNMAKATTIKEALVKWEEKTGEKANDATAVKLYGQIPPIEKM 63

Query:    61 DSSLAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWV 120
             D+SL+ L NCE+LSLSTN IEKI               RNNIK+  GLE + +TLEELW+
Sbjct:    64 DASLSNLVNCERLSLSTNCIEKIANLNGLKNLKILSLGRNNIKNLNGLEAVGDTLEELWI 123

Query:   121 SYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD-DP 179
             SYN IEK KGI VM+KLKVLYMSNNLVKEW EF+KL + PSL+DLVF GNPL E    D 
Sbjct:   124 SYNLIEKLKGIHVMKKLKVLYMSNNLVKEWGEFLKLADLPSLVDLVFVGNPLEEKYSADG 183

Query:   180 LYKSEVKKRLPNLKKLDG 197
              +  E  KRLP LKKLDG
Sbjct:   184 NWIEEATKRLPKLKKLDG 201

GO:0008150 "biological_process" evidence=ND

GENEDB_PFALCIPARUM|MAL8P1.46 MAL8P1.46 "outer arm dynein light chain 2" [Plasmodium falciparum (taxid:5833)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 69/182 (37%), Positives = 104/182 (57%)

Query:    24 LAKP-NLKDALKKWEEENGIPISEAKEVGL--QMQFIEKMDSSLAVLTNCEKLSLSTNMI 80
             +AK     + +K WE++NG  I + +EV     +  IEK+D+S+  L  C++LSLSTN I
Sbjct:     5 MAKEATFSNCIKNWEQKNGKKICDEEEVSFICNIPLIEKLDNSINTLEKCKRLSLSTNRI 64

Query:    81 EKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVL 140
             EK+               RN IK    LE ++ TL++LW+SYNYI+K   +  ++KL+VL
Sbjct:    65 EKLIPMSGLKNIEILSLGRNCIKKIQYLEDISGTLKQLWLSYNYIDKLDNLQSLKKLQVL 124

Query:   141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVL 200
             Y+ +N +K   E  KL   P L++L   GNP+ EG  +   K  + K+LP LK +D E +
Sbjct:   125 YIFHNKIKSIEEIDKLNTLPELVELGLKGNPIYEGKTNEYMKLLILKKLPQLKIVDNETI 184

Query:   201 PE 202
              E
Sbjct:   185 TE 186

GO:0003774 "motor activity" evidence=ISS

UNIPROTKB|Q8IB59 MAL8P1.46 "Outer arm dynein light chain 2, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 69/182 (37%), Positives = 104/182 (57%)

Query:    24 LAKP-NLKDALKKWEEENGIPISEAKEVGL--QMQFIEKMDSSLAVLTNCEKLSLSTNMI 80
             +AK     + +K WE++NG  I + +EV     +  IEK+D+S+  L  C++LSLSTN I
Sbjct:     5 MAKEATFSNCIKNWEQKNGKKICDEEEVSFICNIPLIEKLDNSINTLEKCKRLSLSTNRI 64

Query:    81 EKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVL 140
             EK+               RN IK    LE ++ TL++LW+SYNYI+K   +  ++KL+VL
Sbjct:    65 EKLIPMSGLKNIEILSLGRNCIKKIQYLEDISGTLKQLWLSYNYIDKLDNLQSLKKLQVL 124

Query:   141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVL 200
             Y+ +N +K   E  KL   P L++L   GNP+ EG  +   K  + K+LP LK +D E +
Sbjct:   125 YIFHNKIKSIEEIDKLNTLPELVELGLKGNPIYEGKTNEYMKLLILKKLPQLKIVDNETI 184

Query:   201 PE 202
              E
Sbjct:   185 TE 186

GO:0003774 "motor activity" evidence=ISS

FB|FBgn0010747 Srp54k "Signal recognition particle protein 54k" [Drosophila melanogaster (taxid:7227)]

 Score = 191 (72.3 bits), Expect = 3.9e-14, P = 3.9e-14
 Identities = 33/69 (47%), Positives = 50/69 (72%)

Query:   130 GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRL 189
             G+  M+ L+V Y+S N++K+W EF+++G  P+L ++ F GNPL E MD   + +E  +RL
Sbjct:   497 GLESMKALRVFYISFNMIKDWTEFMRMGVPPNLSEITFVGNPLNENMDQSAFTAEAVRRL 556

Query:   190 PNLKKLDGE 198
             PN+KKLDGE
Sbjct:   557 PNMKKLDGE 565

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=ISS

GO:0008312 "7S RNA binding" evidence=ISS

GO:0006617 "SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition" evidence=ISS

GO:0005048 "signal sequence binding" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

MGI|MGI:1921915 Lrrc48 "leucine rich repeat containing 48" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 7.5e-11, P = 7.5e-11
 Identities = 48/159 (30%), Positives = 75/159 (47%)

Query:    38 EENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXX 97
             ++ GI   +   + L  Q I ++D+ L    N +KL L+ N+IE+I              
Sbjct:    36 KQEGILFKDVLSLQLDFQNILRIDN-LWQFENLKKLQLNNNIIERIEGLTNLIHLVWLDL 94

Query:    98 ARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLG 157
             + NNI++  GL+ L   LE+L +S N I K   +  + KL+VL + NN +      + L 
Sbjct:    95 SFNNIEAIEGLDTLVN-LEDLSLSNNRISKVDSLDALVKLQVLSLGNNQISNMMNIIYLR 153

Query:   158 ECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
               P L  L   GNP+ E  +   YK  +   L +L  LD
Sbjct:   154 RFPCLRTLSLAGNPVSEAEE---YKMFIYAYLSDLVYLD 189

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1309150 Lrrc48 "leucine rich repeat containing 48" [Rattus norvegicus (taxid:10116)]

 Score = 160 (61.4 bits), Expect = 7.5e-11, P = 7.5e-11
 Identities = 48/159 (30%), Positives = 75/159 (47%)

Query:    38 EENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXX 97
             ++ GI   +   + L  Q I ++D+ L    N  KL L+ N+IE+I              
Sbjct:    36 KQEGILFKDVLALQLDFQNILRIDN-LWQFENLRKLQLNNNIIERIEGLENLTHLVWLDL 94

Query:    98 ARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLG 157
             + NNI++  GL+ L   LE+L +S+N I K   +  +  L+VL + NN +      + L 
Sbjct:    95 SFNNIEAIEGLDTLVN-LEDLSLSHNRISKIDSLDPLVNLQVLSLGNNQINNMMNIIYLR 153

Query:   158 ECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
               P L  L   GNP+ E  +   YK  +   LP+L  LD
Sbjct:   154 RFPCLRTLSLSGNPVSEAEE---YKVFIYAYLPDLVYLD 189

GO:0005737 "cytoplasm" evidence=IEA;ISO

UNIPROTKB|E2RI69 LRRC48 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 159 (61.0 bits), Expect = 9.6e-11, P = 9.6e-11
 Identities = 51/158 (32%), Positives = 71/158 (44%)

Query:    39 ENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXXA 98
             + GI   +   + L  Q I ++DS L    N  KL L  N+IEKI              +
Sbjct:    37 QEGILFKDVLSLRLDFQNILRIDS-LWEFENLTKLQLDNNIIEKIEGLEQLVHLVWLDLS 95

Query:    99 RNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGE 158
              NNI++  GL+ L   LE+L +  N I K   +  + KL+VL + NN +      + L  
Sbjct:    96 FNNIEAIEGLDTLVN-LEDLSLFNNRISKIDSLDALVKLQVLSLGNNQIGNMMNIIYLRR 154

Query:   159 CPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
                L  L   GNP+ E  D   YK  V   LP+L  LD
Sbjct:   155 FKDLRTLSLSGNPIAESED---YKMFVCAYLPDLVYLD 189

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1N0Q0 LRRC48 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 153 (58.9 bits), Expect = 4.3e-10, P = 4.3e-10
 Identities = 48/159 (30%), Positives = 74/159 (46%)

Query:    38 EENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXX 97
             ++ GI   +   + L  Q I ++D+ L    + +KL L  N+IEKI              
Sbjct:    35 KQEGILFKDVVSLQLDFQNILRIDN-LWQFESLQKLQLDNNIIEKIEGLENLTRLVWLDL 93

Query:    98 ARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLG 157
             + NNI++  GL+ L   LE+L +  N I K   +  + KL+VL + NN +      + L 
Sbjct:    94 SFNNIEAIEGLDTLVN-LEDLSLFNNRISKIDSLDALVKLQVLSLGNNHIGNMMNIIYLR 152

Query:   158 ECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
                +L  L   GNP+ E  D   YK  +   LP+L  LD
Sbjct:   153 RFKALRTLSLSGNPVAEDED---YKMFICAYLPDLVYLD 188

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4LDG9	DNAL1_HUMAN	No assigned EC number	0.6337	0.8366	0.8894	yes	N/A
Q2KID4	DNAL1_BOVIN	No assigned EC number	0.6279	0.8366	0.8894	yes	N/A
Q8T888	DNAL1_CIOIN	No assigned EC number	0.6011	0.8415	0.8947	yes	N/A
Q6DHB1	DNAL1_DANRE	No assigned EC number	0.6395	0.8366	0.8802	yes	N/A
Q641R9	DNAL1_XENLA	No assigned EC number	0.6569	0.8366	0.8802	N/A	N/A
Q05A62	DNAL1_MOUSE	No assigned EC number	0.6337	0.8366	0.8894	yes	N/A
Q28G94	DNAL1_XENTR	No assigned EC number	0.6569	0.8366	0.8802	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	202
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	3e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 48  KEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFA 106
           KE+ L    IE + S L  L N + L LS N +  +   LS L  L  L L+ N I    
Sbjct: 143 KELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP 202

Query: 107 GLEPLAETLEELWVSYNYIEKTK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDL 165
               L   LEEL +S N I +    +  ++ L  L +SNN +++  E +        +DL
Sbjct: 203 PEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL 262

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 68  TNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLE 109
           TN E L LS N I  +  LS L  L+ L L+ N I   + L 
Sbjct: 1   TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLS 42

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 57  IEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGL--KKLKVLSLARNNIKSFAGLEPLAET 114
           +    S L  LTN   L L  N I  I  L GL    LK L L+ N I+S          
Sbjct: 105 LRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPN 164

Query: 115 LEELWVSYNYI-EKTKGIGVMRKLKVLYMSNNLVKE 149
           L+ L +S+N + +  K +  +  L  L +S N + +
Sbjct: 165 LKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD 200

Length = 394

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
1m9l_A	199	Relaxation-Based Refined Structure Of Chlamydomonas		1e-31
1ds9_A	198	Solution Structure Of Chlamydomonas Outer Arm Dynei		1e-31

>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 199

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/175 (44%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 29  LKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKINXX 86
           +KDA++ +EE   +  +EA++V L      IEKMD++L+ L  C+ L+LSTN IEKI+  
Sbjct: 8   IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSL 67
Query: 87  XXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNL 146
                       RN IK    L+ +A+TLEELW+SYN I    GI  +  L+VLYMSNN 
Sbjct: 68  SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK 127
Query: 147 VKEWAEFVKLGECPSLIDLVFCGNPLV----EGMDDPLYKSEVKKRLPNLKKLDG 197
           +  W E  KL     L DL+  GNPL     E      Y+ EV KRLPNLKKLDG
Sbjct: 128 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 182

>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 198

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/175 (44%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 29  LKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKINXX 86
           +KDA++ +EE   +  +EA++V L      IEKMD++L+ L  C+ L+LSTN IEKI+  
Sbjct: 7   IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSL 66
Query: 87  XXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNL 146
                       RN IK    L+ +A+TLEELW+SYN I    GI  +  L+VLYMSNN 
Sbjct: 67  SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK 126
Query: 147 VKEWAEFVKLGECPSLIDLVFCGNPLV----EGMDDPLYKSEVKKRLPNLKKLDG 197
           +  W E  KL     L DL+  GNPL     E      Y+ EV KRLPNLKKLDG
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-26
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-25
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-24
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-22
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-04

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score =  176 bits (447), Expect = 2e-56
 Identities = 86/182 (47%), Positives = 113/182 (62%), Gaps = 7/182 (3%)

Query: 24  LAKPNL-KDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMI 80
           +AK    KDA++ +EE   +  +EA++V L      IEKMD++L+ L  C+ L+LSTN I
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 81  EKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVL 140
           EKI+ LSG++ L++LSL RN IK    L+ +A+TLEELW+SYN I    GI  +  L+VL
Sbjct: 61  EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL 120

Query: 141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE----GMDDPLYKSEVKKRLPNLKKLD 196
           YMSNN +  W E  KL     L DL+  GNPL            Y+ EV KRLPNLKKLD
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

Query: 197 GE 198
           G 
Sbjct: 181 GM 182

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 97.0 bits (242), Expect = 8e-26
 Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 8/150 (5%)

Query: 52  LQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGL-SGLKKLKVLSLARNNIKSFAGLEP 110
           L  + IE+  +         +L L    I  I  L + L +   +  + N I+   G   
Sbjct: 4   LTAELIEQA-AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL 62

Query: 111 LAETLEELWVSYNYIEKTKGI--GVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFC 168
           L   L+ L V+ N I +        +  L  L ++NN + E  +   L    SL  L   
Sbjct: 63  LRR-LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 169 GNPLVEGMDDPLYKSEVKKRLPNLKKLDGE 198
            NP+        Y+  V  ++P ++ LD +
Sbjct: 122 RNPVTN---KKHYRLYVIYKVPQVRVLDFQ 148

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score =  101 bits (253), Expect = 2e-25
 Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 5/159 (3%)

Query: 39  ENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLA 98
           +   P+  A    L+ +F+ +         +   L L+   +  +  L  L  +  L L+
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLS 471

Query: 99  RNNIKSF-AGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLG 157
            N +++    L  L   LE L  S N +E   G+  + +L+ L + NN +++ A    L 
Sbjct: 472 HNRLRALPPALAAL-RCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLV 530

Query: 158 ECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
            CP L+ L   GN L +   +   +  + + LP++  + 
Sbjct: 531 SCPRLVLLNLQGNSLCQ---EEGIQERLAEMLPSVSSIL 566

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 95.8 bits (238), Expect = 2e-24
 Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 6/193 (3%)

Query: 14  CRQAAEKCALLAKPNLKDALKKWEEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKL 73
              A+   A+  K   ++  +     N           L+ + +E++   ++   +  + 
Sbjct: 71  ASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQ 130

Query: 74  SLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGV 133
           +L    +     L       VL+       +   +E     L  L +S N + +   +  
Sbjct: 131 ALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS 190

Query: 134 ----MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM-DDPLYKSEVKKR 188
                  LK+L +S N +K   E  K+     L +L   GN L +   D   Y S +++R
Sbjct: 191 IVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDGNSLCDTFRDQSTYISAIRER 249

Query: 189 LPNLKKLDGEVLP 201
            P L +LDG  LP
Sbjct: 250 FPKLLRLDGHELP 262

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 86.3 bits (214), Expect = 7e-22
 Identities = 36/141 (25%), Positives = 50/141 (35%), Gaps = 24/141 (17%)

Query: 57  IEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLE 116
             K++         E LS     +  I  L  L KLK L L+ N +    GLE LAE   
Sbjct: 31  EGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSG--GLEVLAEKCP 88

Query: 117 ELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176
                               L  L +S N +K+ +    L +  +L  L      +    
Sbjct: 89  -------------------NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT--- 126

Query: 177 DDPLYKSEVKKRLPNLKKLDG 197
           +   Y+  V K LP L  LDG
Sbjct: 127 NLNDYRENVFKLLPQLTYLDG 147

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 85.6 bits (212), Expect = 2e-21
 Identities = 39/141 (27%), Positives = 54/141 (38%), Gaps = 24/141 (17%)

Query: 57  IEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLE 116
             K++   A   N E LSL    +  ++ L  L KLK L L+ N I    GL+ LAE L 
Sbjct: 38  DGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG--GLDMLAEKLP 95

Query: 117 ELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176
                               L  L +S N +K+ +    L +   L  L      +    
Sbjct: 96  -------------------NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT--- 133

Query: 177 DDPLYKSEVKKRLPNLKKLDG 197
           +   Y+  V K LP L  LDG
Sbjct: 134 NLNDYRESVFKLLPQLTYLDG 154

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 88.2 bits (219), Expect = 2e-21
 Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 7/140 (5%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           SSL  L   + LSL  N I  INGL  L +L+ L L  N I     L  L + L+ L + 
Sbjct: 106 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLE 164

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            N I     +  + KL+ LY+S N + +      L    +L  L       +   + P+ 
Sbjct: 165 DNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL---KNLDVLELFSQECL---NKPIN 218

Query: 182 KSEVKKRLPNLKKLDGEVLP 201
                     +K  DG ++ 
Sbjct: 219 HQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 16/137 (11%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
            S        K +L    +      + L  +  +    ++IKS  G++ L   + +L+++
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VTKLFLN 76

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL--VEGMDDP 179
            N +   K +  ++ L  L++  N VK   +   L +   L  L    N +  + G+   
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGISDINGLVH- 132

Query: 180 LYKSEVKKRLPNLKKLD 196
                    LP L+ L 
Sbjct: 133 ---------LPQLESLY 140

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 18/127 (14%), Positives = 46/127 (36%), Gaps = 16/127 (12%)

Query: 72  KLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGI 131
           +       I++I       +    +L + ++        L  +++++  + + I+  +GI
Sbjct: 6   ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQGI 64

Query: 132 GVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL--VEGMDDPLYKSEVKKRL 189
             +  +  L+++ N + +      L    +L  L    N +  +  + D          L
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPLANL---KNLGWLFLDENKVKDLSSLKD----------L 111

Query: 190 PNLKKLD 196
             LK L 
Sbjct: 112 KKLKSLS 118

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWV 120
             LA LT  + L LS N I  +  L+GLK L VL L      +     +        +  
Sbjct: 172 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

Query: 121 SYNYIEKTKGI---GVMRKLKVLYMSNNLVKE 149
           +   +   + I   G   K  V +       E
Sbjct: 232 TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNE 263

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.2 bits (223), Expect = 2e-21
 Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 7/136 (5%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           SSL  L   + LSL  N I  INGL  L +L+ L L  N I     L  L   L+ L + 
Sbjct: 103 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRL-TKLDTLSLE 161

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            N I     +  + KL+ LY+S N + +      L    +L  L       +   + P+ 
Sbjct: 162 DNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL---KNLDVLELFSQECL---NKPIN 215

Query: 182 KSEVKKRLPNLKKLDG 197
                     +K  DG
Sbjct: 216 HQSNLVVPNTVKNTDG 231

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.0 bits (194), Expect = 2e-17
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
            +   L + +++  + + I+ + G+  L  +  L L  N +     L  L   L  L++ 
Sbjct: 37  VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKN-LGWLFLD 95

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            N I+    +  ++KLK L + +N +    +   L   P L  L    N + +     L 
Sbjct: 96  ENKIKDLSSLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITD--ITVL- 149

Query: 182 KSEVKKRLPNLKKLD 196
                 RL  L  L 
Sbjct: 150 -----SRLTKLDTLS 159

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.2 bits (192), Expect = 3e-17
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 16/137 (11%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
                     K +L    +      + L  +  +    ++IKS  G++ L   + +L+++
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VTKLFLN 73

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL--VEGMDDP 179
            N +   K +  ++ L  L++  N +K   +   L +   L  L    N +  + G+   
Sbjct: 74  GNKLTDIKPLTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHNGISDINGLVH- 129

Query: 180 LYKSEVKKRLPNLKKLD 196
                    LP L+ L 
Sbjct: 130 ---------LPQLESLY 137

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.1 bits (189), Expect = 6e-17
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 12/135 (8%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
             +  L N  KL L+ N +  I  L+ LK L  L L  N IK  + L+ L + L+ L + 
Sbjct: 59  QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDL-KKLKSLSLE 117

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
           +N I    G+  + +L+ LY+ NN + +     +L     L  L    N + +    PL 
Sbjct: 118 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRL---TKLDTLSLEDNQISD--IVPL- 171

Query: 182 KSEVKKRLPNLKKLD 196
                  L  L+ L 
Sbjct: 172 -----AGLTKLQNLY 181

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.8 bits (170), Expect = 3e-14
 Identities = 18/128 (14%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 71  EKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKG 130
            +    +  I++I       +    +L + ++        L  +++++  + + I+  +G
Sbjct: 2   GETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQG 60

Query: 131 IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL--VEGMDDPLYKSEVKKR 188
           I  +  +  L+++ N + +      L    +L  L    N +  +  + D          
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIKPLTNL---KNLGWLFLDENKIKDLSSLKD---------- 107

Query: 189 LPNLKKLD 196
           L  LK L 
Sbjct: 108 LKKLKSLS 115

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNI--KSFAGLEPLAETLEELW 119
             LA LT  + L LS N I  +  L+GLK L VL L       K       L      + 
Sbjct: 169 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVV-PNTVK 227

Query: 120 VSYNYIEKTKGIGVMRKLKVLYMSNNLVKEW 150
            +   +   + I      +   +  +L +  
Sbjct: 228 NTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 258

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 87.4 bits (217), Expect = 3e-21
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 24/159 (15%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           + +   TN ++L LS N I  ++ L  L KL+ LS+ RN +K+  G+      L  L++ 
Sbjct: 57  AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA--CLSRLFLD 114

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKL-------------------GECPSL 162
            N +  T  +  ++ L++L + NN +K       L                        +
Sbjct: 115 NNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKV 174

Query: 163 IDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVLP 201
             +   G   V   ++P+           +K  DG  + 
Sbjct: 175 NWIDLTGQKCV---NEPVKYQPELYITNTVKDPDGRWIS 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.4 bits (186), Expect = 7e-17
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 13/135 (9%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
                L N  K +L    +  +     L  ++  +   +NI+S AG++     L+EL +S
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFF-TNLKELHLS 71

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
           +N I     +  + KL+ L ++ N +K     +       L  L    N L +   D L 
Sbjct: 72  HNQISDLSPLKDLTKLEELSVNRNRLKN----LNGIPSACLSRLFLDNNELRDT--DSLI 125

Query: 182 KSEVKKRLPNLKKLD 196
                  L NL+ L 
Sbjct: 126 H------LKNLEILS 134

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 10/84 (11%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
             L  L+  E L L  N I    GL+ LKK+  + L      +    EP+ +   EL+++
Sbjct: 144 VMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVN----EPV-KYQPELYIT 198

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNN 145
            N ++   G    R +   Y+SN 
Sbjct: 199 -NTVKDPDG----RWISPYYISNG 217

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 80.3 bits (199), Expect = 2e-18
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           S LA LT+    +   N I  I  ++ + +L  L +  N I   + L  L++ L  L + 
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQ-LTWLEIG 251

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            N I     +  + KLK+L + +N + + +    L     L  L    N L     + + 
Sbjct: 252 TNQISDINAVKDLTKLKMLNVGSNQISDISVLNNL---SQLNSLFLNNNQLGNEDMEVI- 307

Query: 182 KSEVKKRLPNLKKLD 196
                  L NL  L 
Sbjct: 308 -----GGLTNLTTLF 317

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.0 bits (188), Expect = 8e-17
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           S LA L+    L + TN I  IN +  L KLK+L++  N I   + L  L   L  L+++
Sbjct: 237 SPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNL-SQLNSLFLN 295

Query: 122 YNYIEKT--KGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
            N +     + IG +  L  L++S N + +      L     +    F    +
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL---SKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.5 bits (184), Expect = 3e-16
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           S L+ +T    L+++ + ++ +  ++ L  L  LSL  N I+  + L  L   L      
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS-LHYFTAY 207

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            N I     +  M +L  L + NN + + +    L     L  L    N +         
Sbjct: 208 VNQITDITPVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQIS-------- 256

Query: 182 KSEVKKRLPNLKKLD 196
                K L  LK L+
Sbjct: 257 DINAVKDLTKLKMLN 271

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.1 bits (183), Expect = 4e-16
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
              A L    +  L    +  +     L+ +  L +A   + S  G+E L   LE L ++
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTN-LEYLNLN 74

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            N I     +  + KL  LY+  N + + +    L    +L +L    + + +    PL 
Sbjct: 75  GNQITDISPLSNLVKLTNLYIGTNKITDISALQNL---TNLRELYLNEDNISDI--SPL- 128

Query: 182 KSEVKKRLPNLKKLD 196
                  L  +  L+
Sbjct: 129 -----ANLTKMYSLN 138

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 13/136 (9%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
             +  LTN E L+L+ N I  I+ LS L KL  L +  N I   + L+ L   L EL+++
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNL-TNLRELYLN 118

Query: 122 YNYIEKTKGIGVMRKLKVLYMS-NNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPL 180
            + I     +  + K+  L +  N+ + + +    +     L  L    + +        
Sbjct: 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNM---TGLNYLTVTESKVK------- 168

Query: 181 YKSEVKKRLPNLKKLD 196
                   L +L  L 
Sbjct: 169 -DVTPIANLTDLYSLS 183

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.4 bits (163), Expect = 3e-13
 Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLA--ETLEELW 119
           +++  LT  + L++ +N I  I+ L+ L +L  L L  N + +   +E +     L  L+
Sbjct: 259 NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNE-DMEVIGGLTNLTTLF 317

Query: 120 VSYNYIEKTKGIGVMRKLKVLYMSNNLVKE 149
           +S N+I   + +  + K+     +N ++K+
Sbjct: 318 LSQNHITDIRPLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 12/125 (9%)

Query: 72  KLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGI 131
            L+     I +I   + L +     L + ++      E L E++ +L V+   +   +GI
Sbjct: 4   TLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEEL-ESITKLVVAGEKVASIQGI 62

Query: 132 GVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPN 191
             +  L+ L ++ N + + +    L     L +L    N +              + L N
Sbjct: 63  EYLTNLEYLNLNGNQITDISPLSNL---VKLTNLYIGTNKIT--------DISALQNLTN 111

Query: 192 LKKLD 196
           L++L 
Sbjct: 112 LRELY 116

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 16/105 (15%), Positives = 27/105 (25%), Gaps = 12/105 (11%)

Query: 92  LKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWA 151
              L+     I        LAE      +    +        +  +  L ++   V    
Sbjct: 2   AATLATLPAPINQIFPDADLAE-GIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ 60

Query: 152 EFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
               +    +L  L   GN + +    PL        L  L  L 
Sbjct: 61  G---IEYLTNLEYLNLNGNQITD--ISPL------SNLVKLTNLY 94

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.8 bits (200), Expect = 3e-18
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 12/135 (8%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           + L +LTN ++LSL+ N ++ I  L+ L  L  L LA N I + A L  L + L EL + 
Sbjct: 215 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKLG 273

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            N I     +  +  L  L ++ N +++ +    +    +L  L    N + +    P+ 
Sbjct: 274 ANQISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISD--ISPV- 327

Query: 182 KSEVKKRLPNLKKLD 196
                  L  L++L 
Sbjct: 328 -----SSLTKLQRLF 337

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.0 bits (198), Expect = 6e-18
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 7/140 (5%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           S LA LT    L L+ N +E I+ +S LK L  L+L  NNI   + +  L   L+ L+  
Sbjct: 281 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL-TKLQRLFFY 339

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            N +     +  +  +  L   +N + +      L     +  L           + P+ 
Sbjct: 340 NNKVSDVSSLANLTNINWLSAGHNQISDLTPLANL---TRITQLGLNDQAWT---NAPVN 393

Query: 182 KSEVKKRLPNLKKLDGEVLP 201
                     +K + G ++ 
Sbjct: 394 YKANVSIPNTVKNVTGALIA 413

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 79.6 bits (197), Expect = 9e-18
 Identities = 38/135 (28%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           S LA LTN E L  + N I  I  L  L  L  LSL  N +K    L  L   L +L ++
Sbjct: 193 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLA 251

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            N I     +  + KL  L +  N +        L    +L +L    N L +       
Sbjct: 252 NNQISNLAPLSGLTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLED------- 301

Query: 182 KSEVKKRLPNLKKLD 196
                  L NL  L 
Sbjct: 302 -ISPISNLKNLTYLT 315

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.0 bits (185), Expect = 3e-16
 Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 12/135 (8%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
             LA LT  E+L +S+N +  I+ L+ L  L+ L    N I     L  L   L+EL ++
Sbjct: 171 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN-LDELSLN 229

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            N ++    +  +  L  L ++NN +   A    L     L +L    N +      PL 
Sbjct: 230 GNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN--ISPL- 283

Query: 182 KSEVKKRLPNLKKLD 196
                  L  L  L+
Sbjct: 284 -----AGLTALTNLE 293

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 13/135 (9%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
             +  L N  +++ S N +  I  L  L KL  + +  N I     L  L   L  L + 
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLF 120

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            N I     +  +  L  L +S+N +    +   L    SL  L   GN + +    PL 
Sbjct: 121 NNQITDIDPLKNLTNLNRLELSSNTIS---DISALSGLTSLQQL-SFGNQVTD--LKPL- 173

Query: 182 KSEVKKRLPNLKKLD 196
                  L  L++LD
Sbjct: 174 -----ANLTTLERLD 183

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.3 bits (178), Expect = 3e-15
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
            +   L    K  L    +      + L ++  L   R  IKS  G+E L   L ++  S
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYL-NNLTQINFS 76

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            N +     +  + KL  + M+NN + +      L    +L  L    N + +       
Sbjct: 77  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANL---TNLTGLTLFNNQITD------- 126

Query: 182 KSEVKKRLPNLKKLD 196
             +  K L NL +L+
Sbjct: 127 -IDPLKNLTNLNRLE 140

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.8 bits (169), Expect = 4e-14
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           S+L+ LT+ ++LS   N +  +  L+ L  L+ L ++ N +   + L  L   LE L  +
Sbjct: 150 SALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKL-TNLESLIAT 207

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            N I     +G++  L  L ++ N +K   +   L    +L DL    N +         
Sbjct: 208 NNQISDITPLGILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQIS-------- 256

Query: 182 KSEVKKRLPNLKKLD 196
                  L  L +L 
Sbjct: 257 NLAPLSGLTKLTELK 271

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 12/122 (9%)

Query: 75  LSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVM 134
                I +I   + L +     L + N+        L + +  L      I+   G+  +
Sbjct: 9   TQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDGVEYL 67

Query: 135 RKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKK 194
             L  +  SNN + +      L     L+D++   N + +    PL        L NL  
Sbjct: 68  NNLTQINFSNNQLTDITPLKNL---TKLVDILMNNNQIAD--ITPL------ANLTNLTG 116

Query: 195 LD 196
           L 
Sbjct: 117 LT 118

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 1/86 (1%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           SSLA LTN   LS   N I  +  L+ L ++  L L      +         ++     +
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406

Query: 122 YNY-IEKTKGIGVMRKLKVLYMSNNL 146
               +     I          ++ NL
Sbjct: 407 VTGALIAPATISDGGSYTEPDITWNL 432

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 78.2 bits (193), Expect = 1e-17
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 12/135 (8%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           S++A L + + L L++  I  +  L+GL  L+VL L  N I + + L  L   L+ L + 
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGL-TNLQYLSIG 159

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
              +     +  + KL  L   +N +    +   L   P+LI++    N + +    PL 
Sbjct: 160 NAQVSDLTPLANLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQISD--VSPL- 213

Query: 182 KSEVKKRLPNLKKLD 196
                    NL  + 
Sbjct: 214 -----ANTSNLFIVT 223

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.3 bits (188), Expect = 6e-17
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
             +  L N   L L  N I  +  L  L K+  L L+ N +K+ + +  L   ++ L ++
Sbjct: 57  EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQS-IKTLDLT 115

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
              I     +  +  L+VLY+  N +   +    L    +L  L      + +    PL 
Sbjct: 116 STQITDVTPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSD--LTPL- 169

Query: 182 KSEVKKRLPNLKKLD 196
                  L  L  L 
Sbjct: 170 -----ANLSKLTTLK 179

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.9 bits (187), Expect = 9e-17
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 12/135 (8%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           + L  LT   +L LS N ++ ++ ++GL+ +K L L    I     L  L+  L+ L++ 
Sbjct: 79  APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN-LQVLYLD 137

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            N I     +  +  L+ L + N  V +      L     L  L    N +         
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL---SKLTTLKADDNKIS-------- 186

Query: 182 KSEVKKRLPNLKKLD 196
                  LPNL ++ 
Sbjct: 187 DISPLASLPNLIEVH 201

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.0 bits (182), Expect = 4e-16
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           S LA LTN + LS+    +  +  L+ L KL  L    N I   + L  L   L E+ + 
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASL-PNLIEVHLK 203

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVK 155
            N I     +     L ++ ++N  +     F  
Sbjct: 204 NNQISDVSPLANTSNLFIVTLTNQTITNQPVFYN 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.6 bits (181), Expect = 6e-16
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 12/135 (8%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
                L N  K++   + +      + L  +  LS     + +  G++ L   L  L + 
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYL-NNLIGLELK 71

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            N I     +  + K+  L +S N +K       +    S+  L      + +    PL 
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITD--VTPL- 125

Query: 182 KSEVKKRLPNLKKLD 196
                  L NL+ L 
Sbjct: 126 -----AGLSNLQVLY 135

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 13/124 (10%)

Query: 74  SLSTNM-IEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIG 132
           S++    I  I     L     ++  ++N+        L + +  L      +   +G+ 
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADL-DGITTLSAFGTGVTTIEGVQ 60

Query: 133 VMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNL 192
            +  L  L + +N + + A    L     + +L   GNPL       +        L ++
Sbjct: 61  YLNNLIGLELKDNQITDLAPLKNL---TKITELELSGNPLKN--VSAIAG------LQSI 109

Query: 193 KKLD 196
           K LD
Sbjct: 110 KTLD 113

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 12/129 (9%)

Query: 27  PNLKDALKKWEEENGI-PISEA-----KEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMI 80
              K  L     ++    I+EA       + L    +  + + +    N + L+++    
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHA 78

Query: 81  EKINGLSGLKKLKVLSLARNNIKSFAGLEPLAE--TLEELWVSYNYIEKT--KGIGVMRK 136
              N +SGL  L+ L +   ++ S   +  L+   +L  L +S++  + +    I  + K
Sbjct: 79  TNYNPISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 137 LKVLYMSNN 145
           +  + +S N
Sbjct: 138 VNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.1 bits (154), Expect = 9e-13
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 62  SSLAVLTNCEKLSLSTNMIE--KINGLSGLKKLKVLSLARNN-IKSFAGLEPLAETLEEL 118
            +L+ LT+   L +S +  +   +  ++ L K+  + L+ N  I     L+ L E L+ L
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE-LKSL 164

Query: 119 WVSYNYIEKTKGIGVMRKLKVLYMSNNLV 147
            + ++ +   +GI    KL  LY  +  +
Sbjct: 165 NIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 8/43 (18%), Positives = 14/43 (32%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS 104
             L  L   + L++  + +    G+    KL  L      I  
Sbjct: 153 MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.8 bits (163), Expect = 2e-13
 Identities = 18/143 (12%), Positives = 42/143 (29%), Gaps = 14/143 (9%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEELWV 120
           +SL  +     L    N +  +       KL  L L  N I+          + +E L  
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 121 SYNYIE---KTKGIGVMRKLKVLYMSNN----LVKEWAEFVKLGECPSLIDLVFCGNPLV 173
           S+N ++          +  +  +  S N      +  +  +   +  +   +    N + 
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI- 685

Query: 174 EGMDDPLYKSEVKKRLPNLKKLD 196
           +     L+          +  + 
Sbjct: 686 QKFPTELF-----ATGSPISTII 703

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 24/160 (15%)

Query: 52  LQMQFIEKMDSSLAVLTNCEKLSLS-TNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLE 109
              +  E  + S + L +   + L     + ++ + L  L +L+ L++A N   S A L+
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534

Query: 110 PLAET----------LEELWVSYNYIE---KTKGIGVMRKLKVLYMSNNLVKEWAEFVKL 156
                          ++  ++ YN +E    +  +  M KL +L   +N V+    F   
Sbjct: 535 ADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAF--- 591

Query: 157 GECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
           G    L DL    N + E         +       ++ L 
Sbjct: 592 GTNVKLTDLKLDYNQIEEI------PEDFCAFTDQVEGLG 625

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 21/158 (13%)

Query: 53  QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-----------NGLSGLKKLKVLSLARNN 101
               + ++   L  L   + L+++ N                +      K+++  +  NN
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 102 IKSF---AGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGE 158
           ++ F   A L+ +   L  L   +N +   +  G   KL  L +  N ++E  E      
Sbjct: 560 LEEFPASASLQKM-VKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDF-CAF 617

Query: 159 CPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
              +  L F  N L       +      K +  +  +D
Sbjct: 618 TDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVD 650

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 31/158 (19%), Positives = 47/158 (29%), Gaps = 36/158 (22%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI---------NGLSGLKKLKVLSLARNNIKS------F 105
               A  +    + LS N++  I                 L  + L  N + S       
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749

Query: 106 AGLEPLAETLEELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVK-----LGEC 159
             L      L  + VSYN             +LK   + +    E    ++     +  C
Sbjct: 750 TTL----PYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805

Query: 160 PSLIDLVFCGNPLVEGMDDPLYKSEV-KKRLPNLKKLD 196
           PSLI L    N +           +V +K  P L  LD
Sbjct: 806 PSLIQLQIGSNDI----------RKVDEKLTPQLYILD 833

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 15/143 (10%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSF--AGLEPLAET------LE 116
             N   ++LS N I+K      +    +  + L+ N + S     L+P          L 
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 117 ELWVSYNYIEK---TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLV 173
            + + +N +           +  L  + +S N    +    +      L           
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT--QPLNSSQLKAFGIRHQRDA 789

Query: 174 EGMDDPLYKSEVKKRLPNLKKLD 196
           EG              P+L +L 
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQ 812

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 22/155 (14%), Positives = 41/155 (26%), Gaps = 41/155 (26%)

Query: 57  IEKMDSSLAVLTNCEKLSLSTNMIEKIN---------------------GLSGLKKLKVL 95
           I  +  ++  LT  + +  + +     N                       S LK L  +
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 96  SLARNNI-----KSFAGLEPLAETLEELWVSYNYIEK-----------TKGIGVMRKLKV 139
            L               L      L+ L ++ N                       K+++
Sbjct: 497 ELYNCPNMTQLPDFLYDL----PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 140 LYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
            YM  N ++E+     L +   L  L    N +  
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 17/131 (12%)

Query: 57  IEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKSF-AGLEPLA 112
           ++  D +         + L  N +  +      + L  L  + ++ N   SF        
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS- 775

Query: 113 ETLEELWVSYNYIEKT--------KGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLID 164
             L+   + +    +          GI     L  L + +N +++    V     P L  
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK----VDEKLTPQLYI 831

Query: 165 LVFCGNPLVEG 175
           L    NP +  
Sbjct: 832 LDIADNPNISI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 17/166 (10%), Positives = 40/166 (24%), Gaps = 39/166 (23%)

Query: 63  SLAVLTNCEKLSLSTNMIEKINGLSGL------------------------------KKL 92
            L          L  + I +   +  +                               KL
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKL 450

Query: 93  KVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKT--KGIGVMRKLKVLYMS-NNLVKE 149
           +++  A +          +A   E+    Y    +        ++ L  + +     + +
Sbjct: 451 QIIYFANSPFTYD----NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

Query: 150 WAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKL 195
             +F  L + P L  L    N  +         + +        K+
Sbjct: 507 LPDF--LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 15/138 (10%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWV 120
            + LA  T  E L+LS+N++ +   L  L  L+ L L  N ++          ++E L  
Sbjct: 51  AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLHA 106

Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNNLVKE--WAEFVKLGECPSLIDLVFCGNPLVEGMDD 178
           + N I +       +  K +Y++NN +      +         +  L    N +      
Sbjct: 107 ANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCR---SRVQYLDLKLNEIDT---- 158

Query: 179 PLYKSEVKKRLPNLKKLD 196
            +  +E+      L+ L+
Sbjct: 159 -VNFAELAASSDTLEHLN 175

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 7/116 (6%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKING---LSGLKKLKVLSLARNNIKSFAGLEPLAETLEE 117
           D      +  + L L  N I+ +N     +    L+ L+L  N I    G       L+ 
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF-AKLKT 195

Query: 118 LWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
           L +S N +            +  + + NN +    +   L    +L      GN  
Sbjct: 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 16/138 (11%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEEL 118
            S      N ++L LS N + +I    L+   KL++L+L+ N +     LE L+  L  L
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLST-LRTL 85

Query: 119 WVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD 178
            ++ NY+++   + V   ++ L+ +NN +      V         ++    N +    D 
Sbjct: 86  DLNNNYVQE---LLVGPSIETLHAANNNISR----VSCSRGQGKKNIYLANNKITMLRDL 138

Query: 179 PLYKSEVKKRLPNLKKLD 196
                        ++ LD
Sbjct: 139 DEGC------RSRVQYLD 150

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 28/138 (20%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
               +   ++ + +++   +       +K L L+ N +        A        LE L 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF----TKLELLN 64

Query: 120 VSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDP 179
           +S N + +T  +  +  L+ L ++NN V+E      L   PS+  L    N +       
Sbjct: 65  LSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNI------- 111

Query: 180 LYKSEVKKR-LPNLKKLD 196
              S V        K + 
Sbjct: 112 ---SRVSCSRGQGKKNIY 126

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 2/93 (2%)

Query: 57  IEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETL 115
           +  M            +SL  N +  I   L   + L+   L  N        +  ++  
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 116 EELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLV 147
               V+   ++K T        +  L       
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 12/137 (8%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
                L N   +SL+   I+ +  +    K + LS+ R  +K F  L+     L+ L ++
Sbjct: 279 VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDL--PFLKSLTLT 336

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKE--WAEFVKLGECPSLIDLVFCGNPLVEGMDDP 179
            N    +     +  L  L +S N +       +  LG   SL  L    N  +      
Sbjct: 337 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAII----- 390

Query: 180 LYKSEVKKRLPNLKKLD 196
              S     L  L+ LD
Sbjct: 391 --MSANFMGLEELQHLD 405

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 13/120 (10%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAET 114
            S +  +  + L LS   IE I      GL  L  L L  N I+S     F+GL     +
Sbjct: 50  YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL----TS 105

Query: 115 LEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
           LE L      +    +  IG +  LK L +++N +             +L+ +    N +
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 13/94 (13%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
            +  A  TN   L LS   +E+I+      L +L++L+++ NN+       +  L     
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL----Y 521

Query: 114 TLEELWVSYNYIEKTKG--IGVMRKLKVLYMSNN 145
           +L  L  S+N IE +KG      + L    ++NN
Sbjct: 522 SLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 31/153 (20%), Positives = 53/153 (34%), Gaps = 26/153 (16%)

Query: 57  IEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKS-----FAGL 108
              M ++   L   + L    + ++++   +    L+KL  L ++  N K      F GL
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

Query: 109 EPLAETLEELWVSYNYIEKT---KGIGVMRKLKVLYMSNNLVKE--WAEFVKLGECPSLI 163
                +L  L ++ N  +             L  L +S   +++  W  F  L     L 
Sbjct: 448 ----TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL---HRLQ 500

Query: 164 DLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
            L    N L   +D   Y       L +L  LD
Sbjct: 501 LLNMSHNNL-LFLDSSHYNQ-----LYSLSTLD 527

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 13/139 (9%)

Query: 62  SSLAVLTNC--EKLSLSTNMIEKIN--GLSGLKKLKVLSLARNNIKSFAGLEPLAETLEE 117
           S +  L +   ++  L+       +      L  +  +SLA  +IK    +       + 
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH-FKWQS 311

Query: 118 LWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177
           L +    +++   +  +  LK L ++ N      + V L   PSL  L    N L     
Sbjct: 312 LSIIRCQLKQFPTLD-LPFLKSLTLTMNKGSISFKKVAL---PSLSYLDLSRNALSFSGC 367

Query: 178 DPLYKSEVKKRLPNLKKLD 196
                        +L+ LD
Sbjct: 368 CSYSDL----GTNSLRHLD 382

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 13/141 (9%)

Query: 63  SLAVLTNCEKLSLSTNMIEKINGLS----GLKKLKVLSLARNNIKSFAGLEPLAETLEEL 118
               L +   L LS N +      S    G   L+ L L+ N     +      E L+ L
Sbjct: 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL 404

Query: 119 WVSYNYIEKTKGIGV---MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEG 175
              ++ +++         + KL  L +S    K   + +      SL  L   GN   + 
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI-FLGLTSLNTLKMAGNSFKDN 463

Query: 176 MDDPLYKSEVKKRLPNLKKLD 196
               ++ +       NL  LD
Sbjct: 464 TLSNVFAN-----TTNLTFLD 479

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 25/150 (16%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS------FAGLEPLA 112
             S + LT+ E L      +  +    +  L  LK L++A N I S      F+ L    
Sbjct: 97  PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL---- 152

Query: 113 ETLEELWVSYNYIE--KTKGIGVMRKLK----VLYMSNNLVKEWAEFVKLGECPSLIDLV 166
             L  + +SYNYI+      +  +R+       L MS N +    +  +  +   L +L 
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD--QAFQGIKLHELT 210

Query: 167 FCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
             GN     +     ++     L  L    
Sbjct: 211 LRGNFNSSNIMKTCLQN-----LAGLHVHR 235

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 26/116 (22%)

Query: 92  LKVLSLARNNIK-----SFAGLEPLAETLEELWVSYNYIEK--TKGIGVMRKLKVLYMSN 144
            K + L+ N +K     SF+        L+ L +S   IE    K    +  L  L ++ 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNF----SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 145 N----LVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
           N                   SL +LV     L      P+       +L  LKKL+
Sbjct: 90  NPIQSFSPGS-----FSGLTSLENLVAVETKLASLESFPI------GQLITLKKLN 134

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.3 bits (154), Expect = 3e-12
 Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 11/136 (8%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWV 120
            + LA  T  E L+LS+N++ +   L  L  L+ L L  N ++          ++E L  
Sbjct: 51  AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLHA 106

Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPL 180
           + N I +       +  K +Y++NN +    +    G    +  L    N +       +
Sbjct: 107 ANNNISRVS-CSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDT-----V 159

Query: 181 YKSEVKKRLPNLKKLD 196
             +E+      L+ L+
Sbjct: 160 NFAELAASSDTLEHLN 175

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.5 bits (144), Expect = 8e-11
 Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 16/138 (11%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEEL 118
            S      N ++L LS N + +I    L+   KL++L+L+ N +     LE L+  L  L
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLST-LRTL 85

Query: 119 WVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD 178
            ++ NY+++   + V   ++ L+ +NN +      V         ++    N +    D 
Sbjct: 86  DLNNNYVQE---LLVGPSIETLHAANNNISR----VSCSRGQGKKNIYLANNKITMLRDL 138

Query: 179 PLYKSEVKKRLPNLKKLD 196
                        ++ LD
Sbjct: 139 DE------GCRSRVQYLD 150

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.4 bits (136), Expect = 8e-10
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 22/135 (16%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG--LEPLAETLEELWVSY 122
               +   ++ + +++   +       +K L L+ N +   +   L P  + LE L +S 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSS 67

Query: 123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYK 182
           N + +T  +  +  L+ L ++NN V+E      L   PS+  L    N +          
Sbjct: 68  NVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNI---------- 111

Query: 183 SEVKKR-LPNLKKLD 196
           S V        K + 
Sbjct: 112 SRVSCSRGQGKKNIY 126

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.1 bits (130), Expect = 6e-09
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 9/90 (10%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNI----KSFAGLEPLAETLE 116
               A     E L+L  N I  + G     KLK L L+ N +      F         + 
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSA----AGVT 217

Query: 117 ELWVSYNYIEK-TKGIGVMRKLKVLYMSNN 145
            + +  N +    K +   + L+   +  N
Sbjct: 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGN 247

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 19/144 (13%), Positives = 43/144 (29%), Gaps = 8/144 (5%)

Query: 57  IEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETL 115
           +  M            +SL  N +  I   L   + L+   L  N        +  ++  
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 116 EELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLV 173
               V+   ++K  G          + +      ++    +       LI L    + L+
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED----LPAPFADRLIALKRKEHALL 318

Query: 174 EGMDDPLYKSEVKK-RLPNLKKLD 196
            G      + E ++      +++D
Sbjct: 319 SGQGSETERLECERENQARQREID 342

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.1 bits (154), Expect = 5e-12
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 18/140 (12%)

Query: 67  LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
             + E ++   N +E++  L  L  L  +    N++K    L  L  +LE +    N +E
Sbjct: 172 PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK---LPDLPLSLESIVAGNNILE 228

Query: 127 KTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDP------- 179
           +   +  +  L  +Y  NNL+K   +       PSL  L    N L +  + P       
Sbjct: 229 ELPELQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLPELPQSLTFLD 283

Query: 180 ---LYKSEVKKRLPNLKKLD 196
                 S + +  PNL  L+
Sbjct: 284 VSENIFSGLSELPPNLYYLN 303

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 71  EKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKG 130
           E L +S N +EK+  L     LK++ +  N++K    L  L  +LE +    N +E+   
Sbjct: 134 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK---LPDLPPSLEFIAAGNNQLEELPE 190

Query: 131 IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
           +  +  L  +Y  NN +K+  +        SL  +V   N L E
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPD-----LPLSLESIVAGNNILEE 229

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 28/148 (18%), Positives = 48/148 (32%), Gaps = 34/148 (22%)

Query: 67  LTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYI 125
             + E L  S N + ++      LK L V +     +        L   LE L VS N +
Sbjct: 90  PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD------LPPLLEYLGVSNNQL 143

Query: 126 EKTKGIGVMRKLKVLYMSNNLVKEWAEFVK-----------------LGECPSLIDLVFC 168
           EK   +     LK++ + NN +K+  +                    L   P L  +   
Sbjct: 144 EKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYAD 203

Query: 169 GNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
            N L           ++     +L+ + 
Sbjct: 204 NNSL----------KKLPDLPLSLESIV 221

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 20/130 (15%)

Query: 67  LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
             + E +    N++E++  L  L  L  +    N +K+   L  L  +LE L V  NY+ 
Sbjct: 214 PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT---LPDLPPSLEALNVRDNYL- 269

Query: 127 KTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVK 186
            T    + + L  L +S N+    +E       P+L  L    N +            + 
Sbjct: 270 -TDLPELPQSLTFLDVSENIFSGLSELP-----PNLYYLNASSNEI----------RSLC 313

Query: 187 KRLPNLKKLD 196
              P+L++L+
Sbjct: 314 DLPPSLEELN 323

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 25/131 (19%)

Query: 67  LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
             N   L+ S+N I  +  L     L+ L+++ N +     L  L   LE L  S+N++ 
Sbjct: 296 PPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIE---LPALPPRLERLIASFNHLA 350

Query: 127 K-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEV 185
           +  +       LK L++  N         +  + P  ++ +   + L          +EV
Sbjct: 351 EVPELPQ---NLKQLHVEYN------PLREFPDIPESVEDLRMNSHL----------AEV 391

Query: 186 KKRLPNLKKLD 196
            +   NLK+L 
Sbjct: 392 PELPQNLKQLH 402

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 24/135 (17%)

Query: 63  SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122
            L  L     +    N+++ +  L     L+ L++  N +     L  L ++L  L VS 
Sbjct: 232 ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTD---LPELPQSLTFLDVSE 286

Query: 123 NYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
           N     ++       L  L  S+N ++           PSL +L    N L         
Sbjct: 287 NIFSGLSELPP---NLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKL--------- 329

Query: 182 KSEVKKRLPNLKKLD 196
             E+    P L++L 
Sbjct: 330 -IELPALPPRLERLI 343

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 23/123 (18%)

Query: 67  LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSF----------------AGLEP 110
               E+L  S N + ++      + LK L +  N ++ F                A +  
Sbjct: 336 PPRLERLIASFNHLAEVP--ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393

Query: 111 LAETLEELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169
           L + L++L V  N + +          ++ L M++  V +  EF        L D VF  
Sbjct: 394 LPQNLKQLHVETNPLREFPDIPE---SVEDLRMNSERVVDPYEFA-HETTDKLEDDVFEH 449

Query: 170 NPL 172
           +  
Sbjct: 450 HHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 19/151 (12%), Positives = 41/151 (27%), Gaps = 29/151 (19%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWV 120
            S                 + ++      ++   L L    + S   L  L   LE L  
Sbjct: 43  WSEWERNAPPGNGEQREMAVSRLRDCL-DRQAHELELNNLGLSS---LPELPPHLESLVA 98

Query: 121 SYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVK--------------LGECPSLIDL 165
           S N + +  +    ++ L V   +   + +    ++              L     L  +
Sbjct: 99  SCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKII 158

Query: 166 VFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
               N L           ++    P+L+ + 
Sbjct: 159 DVDNNSL----------KKLPDLPPSLEFIA 179

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.5 bits (152), Expect = 6e-12
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 16/122 (13%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETL 115
           + +   L+N   L+L+   + +I  L+ L KL  L L+ N++ +     F GL      L
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL----MHL 233

Query: 116 EELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAE--FVKLGECPSLIDLVFCGNP 171
           ++LW+  + I+         ++ L  + +++N +       F  L     L  +    NP
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL---HHLERIHLHHNP 290

Query: 172 LV 173
             
Sbjct: 291 WN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 4e-10
 Identities = 32/140 (22%), Positives = 50/140 (35%), Gaps = 23/140 (16%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
           L N   L L  N +  I       L KLK L L  N I+S     F  +     +L  L 
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI----PSLRRLD 166

Query: 120 VS-YNYIEK-TKGI-GVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176
           +     +   ++G    +  L+ L ++   ++E      L     L +L   GN L    
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL---IKLDELDLSGNHLSAIR 223

Query: 177 DDPLYKSEVKKRLPNLKKLD 196
                     + L +L+KL 
Sbjct: 224 PGSF------QGLMHLQKLW 237

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 68  TNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWV 120
           TN   L+L  N I+ I  N    L+ L++L L+RN+I++     F GL      L  L +
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL----ANLNTLEL 119

Query: 121 SYNYIEK--TKGIGVMRKLKVLYMSNN 145
             N +          + KLK L++ NN
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNN 146

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 20/140 (14%)

Query: 53  QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKS-----FA 106
            ++ ++K    L  L N   L +S N    + +     +K++ L+L+   I+        
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ 431

Query: 107 GLEPL-------------AETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEF 153
            LE L                L+EL++S N ++      +   L V+ +S N +K   + 
Sbjct: 432 TLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDG 491

Query: 154 VKLGECPSLIDLVFCGNPLV 173
           +      SL  +    NP  
Sbjct: 492 I-FDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 20/146 (13%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
              L    N + L L ++ I  I G     L  L+ L L+ N++ S     F  L     
Sbjct: 43  HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL----S 98

Query: 114 TLEELWVSYNYI---EKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGN 170
           +L+ L +  N       T     +  L+ L + N         +      SL +L     
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 171 PLVEGMDDPLYKSEVKKRLPNLKKLD 196
            L        Y+S+  K + ++  L 
Sbjct: 159 SLRN------YQSQSLKSIRDIHHLT 178

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 18/140 (12%)

Query: 66  VLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEEL 118
           +    + L LS N I  I    L     L+VL L  + I +     F  L     +LE L
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL----GSLEHL 79

Query: 119 WVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176
            +S N++    +   G +  LK L +  N  +            +L  L          +
Sbjct: 80  DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 177 DDPLYKSEVKKRLPNLKKLD 196
               +       L +L +L+
Sbjct: 140 RRIDFAG-----LTSLNELE 154

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 53  QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEP 110
           Q      + +  ++L   +++++  + +  +  +    LK L+ L L+ N +        
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 111 LAE----TLEELWVSYNYIEK-TKGIGV---MRKLKVLYMSNN-LVKEWAEFVKLGECPS 161
             +    +L+ L +S N++    K   +   ++ L  L +S N                 
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP---EK 411

Query: 162 LIDLVFCGNPLVEGMDDPLYK-----------SEVKKRLPNLKKLD 196
           +  L      +                           LP L++L 
Sbjct: 412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELY 457

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 9e-08
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 30/146 (20%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
                +L +    +        S L+K+K +++  + +          L    ++LE L 
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL----KSLEFLD 340

Query: 120 VSYN-----YIEKTKGIGVMRKLKVLYMSNN----LVKEWAEFVKLGECPSLIDLVFCGN 170
           +S N     Y++ +   G    L+ L +S N    + K     + L    +L  L    N
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL---KNLTSLDISRN 397

Query: 171 PLVEGMDDPLYKSEVKKRLPNLKKLD 196
                M D             ++ L+
Sbjct: 398 TFHP-MPDSCQW------PEKMRFLN 416

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 59  KMDSSLAVLTNCEKLSLSTNMIEKINGLSG----LKKLKVLSLARNNIKS----FAGLEP 110
           K  +      + + L LS N +  +         LK L  L ++RN              
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP-- 409

Query: 111 LAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGN 170
             E +  L +S   I   K   + + L+VL +SNN +  ++ F+     P L +L    N
Sbjct: 410 --EKMRFLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFSLFL-----PRLQELYISRN 461

Query: 171 PL 172
            L
Sbjct: 462 KL 463

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 28/157 (17%)

Query: 53  QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS------ 104
           ++  IE    +   L + E L LS N +  ++      L  LK L+L  N  ++      
Sbjct: 61  RINTIE--GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 105 FAGLEPLAETLEELWVSYNYIEKTKGIGV---MRKLKVLYMSNNLVK--EWAEFVKLGEC 159
           F  L      L+ L +                +  L  L +    ++  +      +   
Sbjct: 119 FPNL----TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI--- 171

Query: 160 PSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
             +  L    +                  L +++ L+
Sbjct: 172 RDIHHLTLHLSES------AFLLEIFADILSSVRYLE 202

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 18/142 (12%)

Query: 67  LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAET------LEELWV 120
             +C    L      + + +S L K++ +++ R +I  F     L+        ++ + V
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 121 SYNYIEK-TKGIGV-MRKLKVLYMSNNLVKEW--AEFVKLGECPSLIDLVFCGNPL--VE 174
             + +          ++ L+ L +S NL+ E         G  PSL  LV   N L  ++
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 175 GMDDPLYKSEVKKRLPNLKKLD 196
              + L        L NL  LD
Sbjct: 378 KTGEIL------LTLKNLTSLD 393

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 13/150 (8%)

Query: 53  QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPL 111
            + F      S    T+ + L LS N +  + +   GL++L+ L    +N+K  +     
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 112 AE--TLEELWVSYNYIEKT--KGIGVMRKLKVLYMS-NNLVKEWAEFVKLGECPSLIDLV 166
                L  L +S+ +           +  L+VL M+ N+  + +   +   E  +L  L 
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLD 476

Query: 167 FCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
                L +              L +L+ L+
Sbjct: 477 LSQCQLEQLSPTAF------NSLSSLQVLN 500

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 13/120 (10%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAET 114
            S       + L LS   I+ I       L  L  L L  N I+S     F+GL     +
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL----SS 101

Query: 115 LEELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
           L++L      +   +   IG ++ LK L +++NL++ +          +L  L    N +
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 34/165 (20%), Positives = 52/165 (31%), Gaps = 31/165 (18%)

Query: 56  FIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLA--- 112
           +++ +      LTN    SL +  IE++   S     + L L       F  L+  +   
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 113 -----------------ETLEELWVSYNYIEKT----KGIGVMRKLKVLYMSNNLVKEWA 151
                             +LE L +S N +       +       LK L +S N V    
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-- 387

Query: 152 EFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
                     L  L F  + L + M +      V   L NL  LD
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNL-KQMSEF----SVFLSLRNLIYLD 427

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 9e-09
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 12/94 (12%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLA----ET 114
           D +   L++   L L+ N I+ +     SGL  L+ L     N+     LE       +T
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA---SLENFPIGHLKT 125

Query: 115 LEELWVSYNYIEKTK---GIGVMRKLKVLYMSNN 145
           L+EL V++N I+  K       +  L+ L +S+N
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 17/134 (12%)

Query: 71  EKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLA----ETLEELWVSYNY 124
           + L LS N +  +         +L+VL L+R  I+    +E  A      L  L ++ N 
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNP 87

Query: 125 IEKT--KGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYK 182
           I+         +  L+ L      +    E   +G   +L +L    N +        + 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 183 SEVKKRLPNLKKLD 196
           +     L NL+ LD
Sbjct: 147 N-----LTNLEHLD 155

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 14/94 (14%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIK------SFAGLEPLAE 113
           S    L N   L +S            +GL  L+VL +A N+ +       F  L     
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL----R 470

Query: 114 TLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNN 145
            L  L +S   +E+        +  L+VL MS+N
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 14/90 (15%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS------FAGLEPLAETLEEL 118
           L++ +KL      +  +    +  LK LK L++A N I+S      F+ L      LE L
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL----TNLEHL 154

Query: 119 WVSYNYIEKTKG--IGVMRKLKVLYMSNNL 146
            +S N I+      + V+ ++ +L +S +L
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 20/97 (20%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIK-----SFAGLEPLAET 114
                L N   L LS   +E++     + L  L+VL+++ NN        +  L     +
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN----S 519

Query: 115 LEELWVSYNYIEKTKGI------GVMRKLKVLYMSNN 145
           L+ L  S N+I                 L  L ++ N
Sbjct: 520 LQVLDYSLNHI---MTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 17/144 (11%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKING--------LSGLKKLKVLSLARNNIKSFAGLEPLA 112
               + L     L++    +  ++          + L  +   SL    I+         
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 113 ETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
              + L +      +   +  ++ LK L  ++N        V L   PSL  L    N L
Sbjct: 305 -GWQHLELVNCKFGQFPTL-KLKSLKRLTFTSNKGGNAFSEVDL---PSLEFLDLSRNGL 359

Query: 173 VEGMDDPLYKSEVKKRLPNLKKLD 196
                      +      +LK LD
Sbjct: 360 SFKGCCS----QSDFGTTSLKYLD 379

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 26/116 (22%)

Query: 92  LKVLSLARNNIK-----SFAGLEPLAETLEELWVSYNYIEKT--KGIGVMRKLKVLYMSN 144
            K L L+ N ++     SF         L+ L +S   I+         +  L  L ++ 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSF----PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 145 N----LVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
           N    L              SL  LV     L    + P+        L  LK+L+
Sbjct: 86  NPIQSLALGA-----FSGLSSLQKLVAVETNLASLENFPI------GHLKTLKELN 130

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 19/147 (12%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
           D + A  TN  +L L +N I+KI  N     K L  L L+ N + S        L    E
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL----E 145

Query: 114 TLEELWVSYNYIEKTK----GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169
            L+EL +S N I+  K     I     LK L +S+N +KE++          L  L    
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNN 204

Query: 170 NPLVEGMDDPLYKSEVKKRLPNLKKLD 196
             L   + + L          +++ L 
Sbjct: 205 VQLGPSLTEKLCLEL---ANTSIRNLS 228

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 18/144 (12%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIK-----SFAGLEPLAET 114
           ++    +    L +  N I K+       L  LKVL+L  N +      +FA        
Sbjct: 43  ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC----TN 98

Query: 115 LEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
           L EL +  N I+K         + L  L +S+N +    +     +  +L +L+   N +
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKI 157

Query: 173 VEGMDDPLYKSEVKKRLPNLKKLD 196
                + L          +LKKL+
Sbjct: 158 QALKSEELDIFA----NSSLKKLE 177

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIK-------SFAGLEPL 111
           D S   L   E L++  N I  I     +GL  LK LSL+ +          +F  L   
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 112 AETLEELWVSYNYIEKT--KGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169
              L  L ++ N I K        +  L+VL +  N + +     +     ++ ++    
Sbjct: 382 P--LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 170 NPLVEGMDDPLYKSEVKKRLPNLKKLD 196
           N  ++   +          +P+L++L 
Sbjct: 440 NKYLQLTRNSF------ALVPSLQRLM 460

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 19/157 (12%)

Query: 53  QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----F 105
            ++ ++   S    L N   L LS N I  I  + L GL+KL++L L  NN+        
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524

Query: 106 AGLEPLA----ETLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGEC 159
            G           L  L +  N  ++   +    + +LK++ +  N +      V     
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV-FNNQ 583

Query: 160 PSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
            SL  L    N +       + K        NL +LD
Sbjct: 584 VSLKSLNLQKNLITS-----VEKKVFGPAFRNLTELD 615

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 19/150 (12%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIK-----SFAGLEPLA 112
             + + L + E L L  N I +        GL+ +  + L+ N        SFA +    
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV---- 453

Query: 113 ETLEELWVSYNYIEK----TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFC 168
            +L+ L +    ++           +R L +L +SNN +    + + L     L  L   
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLEILDLQ 512

Query: 169 GNPL--VEGMDDPLYKSEVKKRLPNLKKLD 196
            N L  +    +P       K L +L  L+
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILN 542

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 18/151 (11%)

Query: 61  DSSLAVLTNCEKLSLSTNMI-----EKINGLSGLKKLKVLSLARNNIKS-----FAGLEP 110
                 +     L L+   +     EK+        ++ LSL+ + + +     F GL+ 
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247

Query: 111 LAETLEELWVSYNYIEKT--KGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFC 168
               L  L +SYN +          + +L+  ++  N ++       L    ++  L   
Sbjct: 248 T--NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLK 304

Query: 169 GNPLVEGMDD---PLYKSEVKKRLPNLKKLD 196
            +   + +     P       + L  L+ L+
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 26/151 (17%)

Query: 62  SSLAVLT---NCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIK-----SFAGLEPL 111
            ++  L    +  K S+S   + KI+      LK L+ L++  N+I       F GL   
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL--- 352

Query: 112 AETLEELWVSYNYIEKTKGIG------VMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDL 165
              L+ L +S ++                  L +L ++ N + +            L  L
Sbjct: 353 -INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-FSWLGHLEVL 410

Query: 166 VFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
               N + + +       +  + L N+ ++ 
Sbjct: 411 DLGLNEIGQELT-----GQEWRGLENIFEIY 436

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 21/129 (16%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI----------NGLSGLKKLKVLSLARNNIK-----SF 105
           D  L  L   E L L  N + ++            L GL  L +L+L  N         F
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556

Query: 106 AGLEPLAETLEELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLI 163
             L      L+ + +  N +             LK L +  NL+    + V      +L 
Sbjct: 557 KDL----FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612

Query: 164 DLVFCGNPL 172
           +L    NP 
Sbjct: 613 ELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 21/134 (15%)

Query: 71  EKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIK-----SFAGLEPLAETLEELWVSYNY 124
           E    S   + ++ + L     + VL+L  N ++     +F         L  L V +N 
Sbjct: 7   EVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRY----SQLTSLDVGFNT 60

Query: 125 IEKT--KGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYK 182
           I K   +    +  LKVL + +N + + ++      C +L +L    N + +  ++P   
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKT-FAFCTNLTELHLMSNSIQKIKNNPF-- 117

Query: 183 SEVKKRLPNLKKLD 196
                +  NL  LD
Sbjct: 118 ----VKQKNLITLD 127

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 24/153 (15%)

Query: 57  IEKMDSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIK------SFAGL 108
           + ++ S L  L+  +KL LS N  E +     S    L  LS+  N  +          L
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349

Query: 109 EPLAETLEELWVSYNYIEK----TKGIGVMRKLKVLYMSNN-LVKEWAEFVKLGECPSLI 163
               E L EL +S++ IE        +  +  L+ L +S N  +    E     ECP L 
Sbjct: 350 ----ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA--FKECPQLE 403

Query: 164 DLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
            L      L +  D         + L  LK L+
Sbjct: 404 LLDLAFTRL-KVKDAQ----SPFQNLHLLKVLN 431

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 20/146 (13%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIK-----SFAGLEPLAET 114
            ++    +  ++L L+   + ++ +GL GL  LK L L+ N  +     S +       +
Sbjct: 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF----PS 326

Query: 115 LEELWVSYNYIE---KTKGIGVMRKLKVLYMSNN-LVKEWAEFVKLGECPSLIDLVFCGN 170
           L  L +  N       T  +  +  L+ L +S++ +       ++L     L  L    N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 171 PLVEGMDDPLYKSEVKKRLPNLKKLD 196
             +        K+E  K  P L+ LD
Sbjct: 387 EPLS------LKTEAFKECPQLELLD 406

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 14/122 (11%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAET 114
           ++ + L N   L L+   I  I  +      +L  L L  N +        +G     + 
Sbjct: 51  TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP----KA 106

Query: 115 LEELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
           L+ L+     I       +   + L+ LY+ +N +    +  K      L  L F  N +
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAI 165

Query: 173 VE 174
             
Sbjct: 166 HY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 15/102 (14%)

Query: 53  QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----F 105
           Q+ +I   + +       + L L+ N +  +    LSG K LK L   +  I S      
Sbjct: 68  QIYWIH--EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPL 125

Query: 106 AGLEPLAETLEELWVSYNYIEKTKG--IGVMRKLKVLYMSNN 145
                  +TLE L++  N+I   K        KLKVL   NN
Sbjct: 126 HNQ----KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 14/152 (9%)

Query: 53  QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEP 110
            ++  +  +  L  L++ + L+LS N    +         +L++L LA   +K      P
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 111 LA--ETLEELWVSYNYIE--KTKGIGVMRKLKVLYMSNNLVKEWAEFVK--LGECPSLID 164
                 L+ L +S++ ++    +    +  L+ L +  N   +        L     L  
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 165 LVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
           LV     L                L  +  +D
Sbjct: 481 LVLSFCDLSSIDQHAF------TSLKMMNHVD 506

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 27/135 (20%), Positives = 41/135 (30%), Gaps = 20/135 (14%)

Query: 71  EKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIK-----SFAGLEPLAETLEELWVSYN 123
           E L  S N++  I     S L  L  L L R  I      +F         L+ L ++ N
Sbjct: 36  ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ----HRLDTLVLTAN 91

Query: 124 YIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            +       +   + LK L+     +        L    +L  L    N +        +
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 182 KSEVKKRLPNLKKLD 196
                     LK LD
Sbjct: 151 P------TEKLKVLD 159

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 38/173 (21%)

Query: 56  FIEKMDSSLAVLTNCEKLSLSTN--MIEKINGLSG--LKKLKVLSLARNNIKS-----FA 106
            I  ++         + L+      ++    GL    ++ L + +    + +      F 
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 107 GLEPLA----------------------ETLEELWVSYNYIEK-TKGIGVMRKLKVLYMS 143
           GL  ++                        L+EL ++  ++ +   G+  +  LK L +S
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS 309

Query: 144 NNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
            N  +   +       PSL  L   GN     +      +   + L NL++LD
Sbjct: 310 ANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELG-----TGCLENLENLRELD 356

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 16/123 (13%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI-----NGLSGLKKLKVLSLARNNIKS-----FAGLEP 110
           +     L   + L+L  N   K      N L  L +L++L L+  ++ S     F  L  
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL-- 499

Query: 111 LAETLEELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169
             + +  + +S+N +   +       K   L +++N +      + L        +    
Sbjct: 500 --KMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSL-LPILSQQRTINLRQ 556

Query: 170 NPL 172
           NPL
Sbjct: 557 NPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 18/112 (16%)

Query: 92  LKVLSLARNNIK-----SFAGLEPLAETLEELWVSYNYIEK--TKGIGVMRKLKVLYMSN 144
            + L  + N +      +F+ L      L  L ++   I            +L  L ++ 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRL----INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 145 NLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
           N +   AE   L    +L  L F    +      PL           L+ L 
Sbjct: 91  NPLIFMAETA-LSGPKALKHLFFIQTGISSIDFIPL------HNQKTLESLY 135

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.7 bits (147), Expect = 3e-11
 Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 15/118 (12%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS----FAGLEPLAETL 115
           + L       ++ LS N +EKI  +    +++L+ L ++ N + +       +     TL
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI----PTL 303

Query: 116 EELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
           + L +S+N++    +      +L+ LY+ +N +      +KL    +L +L    N  
Sbjct: 304 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT----LKLSTHHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.9 bits (137), Expect = 6e-10
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 12/115 (10%)

Query: 66  VLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWV 120
           V      L L  N +     L     L  + L+ N ++      F  +    + LE L++
Sbjct: 230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM----QRLERLYI 285

Query: 121 SYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
           S N +         +  LKVL +S+N +          +   L +L    N +V 
Sbjct: 286 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN--QPQFDRLENLYLDHNSIVT 338

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 15/136 (11%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWV 120
           D +    T+ + L LS+N +  ++ LS +  L   +++ N + + A        +EEL  
Sbjct: 164 DDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPI----AVEELDA 218

Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPL 180
           S+N I   +G  V  +L +L + +N + + A  +     P L+++    N L + M  P 
Sbjct: 219 SHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNY---PGLVEVDLSYNELEKIMYHPF 274

Query: 181 YKSEVKKRLPNLKKLD 196
                  ++  L++L 
Sbjct: 275 ------VKMQRLERLY 284

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 18/119 (15%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
                 +     L L  N +  +         KL  LS++ NN++      F        
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT----T 171

Query: 114 TLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
           +L+ L +S N +     + ++  L    +S NL+        L    ++ +L    N +
Sbjct: 172 SLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSI 223

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 25/139 (17%), Positives = 56/139 (40%), Gaps = 20/139 (14%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
           L N + ++   + + K+    L   +++++L+L    I+      FA       T+++L+
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA----HTIQKLY 105

Query: 120 VSYNYIEK-TKGIGV-MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177
           + +N I      +   +  L VL +  N +      +     P L  L    N L   ++
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI-FHNTPKLTTLSMSNNNLER-IE 163

Query: 178 DPLYKSEVKKRLPNLKKLD 196
           D  +++       +L+ L 
Sbjct: 164 DDTFQA-----TTSLQNLQ 177

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 5e-08
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 13/94 (13%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
            + L      E L+L+   IE+I     +    ++ L +  N I+      F  +     
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV----P 123

Query: 114 TLEELWVSYNYIEK-TKGI-GVMRKLKVLYMSNN 145
            L  L +  N +    +GI     KL  L MSNN
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 57  IEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETL 115
           +  ++     +   + L LS N +  +        +L+ L L  N+I +         TL
Sbjct: 290 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTL 347

Query: 116 EELWVSYNYIEKTKGIGVMRKLKVLYMSNN 145
           + L +S+N  +      + R +    + + 
Sbjct: 348 KNLTLSHNDWDCNSLRALFRNVARPAVDDA 377

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.8 bits (145), Expect = 6e-11
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 16/122 (13%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETL 115
           + +   L N + L+L    I+ +  L+ L  L+ L ++ N+        F GL     +L
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL----SSL 244

Query: 116 EELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAE--FVKLGECPSLIDLVFCGNP 171
           ++LWV  + +          +  L  L +++N +       F  L     L++L    NP
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL---RYLVELHLHHNP 301

Query: 172 LV 173
             
Sbjct: 302 WN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 44/191 (23%), Positives = 62/191 (32%), Gaps = 49/191 (25%)

Query: 41  GIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSL 97
           GIP S  + + L    I+ + + +   L + E L L  N I +I     +GL  L  L L
Sbjct: 72  GIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130

Query: 98  ARNNIKS-----FAGLEPLAETLEELWVSYNYIEK-------------------TKGIGV 133
             N +       F  L      L ELW+  N IE                     K +  
Sbjct: 131 FDNWLTVIPSGAFEYL----SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186

Query: 134 --------MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEV 185
                   +  LK L +    +K+      L     L +L   GN   E           
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKDMPNLTPL---VGLEELEMSGNHFPEIRPGSF----- 238

Query: 186 KKRLPNLKKLD 196
              L +LKKL 
Sbjct: 239 -HGLSSLKKLW 248

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 6e-11
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 13/121 (10%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
             S       + L LS   I+ I       L  L  L L  N I+S     F+GL     
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL----S 100

Query: 114 TLEELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP 171
           +L++L      +   +   IG ++ LK L +++NL++ +          +L  L    N 
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 172 L 172
           +
Sbjct: 161 I 161

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 6e-10
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 17/152 (11%)

Query: 53  QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPL 111
            + F      S    T+ + L LS N +  + +   GL++L+ L    +N+K  +     
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 112 AE--TLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKE---WAEFVKLGECPSLID 164
                L  L +S+ +           +  L+VL M+ N  +E      F +L    +L  
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL---RNLTF 474

Query: 165 LVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
           L      L +              L +L+ L+
Sbjct: 475 LDLSQCQLEQLSPTAF------NSLSSLQVLN 500

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 8e-10
 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 12/149 (8%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKIN---GLSGLKKLKVLSLARNNIKS-----FAGLEPLA 112
           +  +  L   ++L+++ N+I+        S L  L+ L L+ N I+S        L  + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 113 ETLEELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP 171
                L +S N +     G     +L  L + NN     +  V       L  L      
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF---DSLNVMKTCIQGLAGLEVHRLV 233

Query: 172 LVEGMDDPLYKSEVKKRLPNLKKLDGEVL 200
           L E  ++   +   K  L  L  L  E  
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 18/138 (13%)

Query: 67  LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIK-------SFAGLEPLAETLEELW 119
           L + ++L+ ++N          L  L+ L L+RN +        S  G      +L+ L 
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT----TSLKYLD 379

Query: 120 VSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD 178
           +S+N +   +     + +L+ L   ++ +K+ +EF       +LI L           + 
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 179 PLYKSEVKKRLPNLKKLD 196
                     L +L+ L 
Sbjct: 440 IFNG------LSSLEVLK 451

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 15/116 (12%)

Query: 67  LTNCEKLSLSTNMIEKIN--GLSGLKKLKVLSLARNNIKS------FAGLEPLAETLEEL 118
           L N   L +S            +GL  L+VL +A N+ +       F  L      L  L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL----RNLTFL 475

Query: 119 WVSYNYIEK-TKGI-GVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
            +S   +E+ +      +  L+VL M++N +K   + +      SL  +    NP 
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI-FDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 19/138 (13%)

Query: 68  TNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWV 120
            + + L LS N +  +         +L+VL L+R  I++     +  L      L  L +
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL----SHLSTLIL 83

Query: 121 SYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD 178
           + N I+         +  L+ L      +     F  +G   +L +L    N +      
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQS---- 138

Query: 179 PLYKSEVKKRLPNLKKLD 196
                E    L NL+ LD
Sbjct: 139 -FKLPEYFSNLTNLEHLD 155

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 53  QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG--L 108
           ++Q IE  D +   L++   L L+ N I+ +     SGL  L+ L     N+ S     +
Sbjct: 63  EIQTIE--DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 109 EPLAETLEELWVSYNYIEKTK---GIGVMRKLKVLYMSNN 145
             L   L+EL V++N I+  K       +  L+ L +S+N
Sbjct: 121 GHLKT-LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 26/153 (16%)

Query: 57  IEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKS-----FAGL 108
           +  M S+   L   E L    + ++++   +    L+ L  L ++  + +      F GL
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 109 EPLAETLEELWVSYNYIEKTKGIGV---MRKLKVLYMSNNLVKEWAE--FVKLGECPSLI 163
                +LE L ++ N  ++     +   +R L  L +S   +++ +   F  L    SL 
Sbjct: 445 ----SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL---SSLQ 497

Query: 164 DLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
            L    N L + + D ++      RL +L+K+ 
Sbjct: 498 VLNMASNQL-KSVPDGIF-----DRLTSLQKIW 524

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 17/120 (14%)

Query: 66  VLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEEL 118
           +     +L L  N I+ I    L    KL  L L  N I+       + L     TL EL
Sbjct: 191 LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL----PTLREL 246

Query: 119 WVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKE-----WAEFVKLGECPSLIDLVFCGNPL 172
            +  N + +   G+  ++ L+V+Y+  N + +     +       +      +    NP+
Sbjct: 247 HLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEEL 118
                 L +   L L  N I KI     S L+KL+ L +++N++        L  +L EL
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP--PNLPSSLVEL 128

Query: 119 WVSYNYIEK-TKGI-GVMRKLKVLYMSNNLVKE 149
            +  N I K  KG+   +R +  + M  N ++ 
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 12/101 (11%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEE 117
              L   +   +L L  N I  I    LS L  L+ L L  N +    AGL  L + L+ 
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL-KLLQV 268

Query: 118 LWVSYNYIEK--------TKGIGVMRKLKVLYMSNNLVKEW 150
           +++  N I K                    + + NN V  W
Sbjct: 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 14/98 (14%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAET 114
           + SL+ L    +L L  N + ++  GL  LK L+V+ L  NNI       F  +    + 
Sbjct: 234 NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR 293

Query: 115 --LEELWVSYNYIEKTKGIGV-----MRKLKVLYMSNN 145
                + +  N +     +       +     +   N 
Sbjct: 294 AYYNGISLFNNPV-PYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 38/157 (24%)

Query: 66  VLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-------FAGL-------- 108
           + ++  +L +  N I K+     SGL+ +  + +  N +++       F GL        
Sbjct: 121 LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180

Query: 109 --------EPLAETLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGE 158
                   + L ETL EL + +N I+    + +    KL  L + +N ++       L  
Sbjct: 181 EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS-LSF 239

Query: 159 CPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKL 195
            P+L +L    N L          S V   LP+LK L
Sbjct: 240 LPTLRELHLDNNKL----------SRVPAGLPDLKLL 266

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 34/160 (21%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIK-----SFAGLEPLAE 113
                 L + + L+L+ N I KI      GL  L+VL+L+ N +      +F GL     
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL----P 338

Query: 114 TLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP 171
            +  + +  N+I     +    + KL+ L + +N          +   PS+ D+   GN 
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN------ALTTIHFIPSIPDIFLSGNK 392

Query: 172 LVEGMDDPLYKSEVK---------------KRLPNLKKLD 196
           LV      L  + +                 R+P+L+ L 
Sbjct: 393 LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 22/157 (14%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAE----- 113
            S+   L     + L  N I  I       L+KL+ L L  N + +   +  + +     
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390

Query: 114 -----------TLEELWVSYNYIEKTKGIGV---MRKLKVLYMSNNLVKEWAEFVKLGEC 159
                      T   + +S N +E    +     +  L++L ++ N     +      E 
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 160 PSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
           PSL  L    N L +   +     +V + L +L+ L 
Sbjct: 451 PSLEQLFLGENML-QLAWETELCWDVFEGLSHLQVLY 486

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 20/141 (14%)

Query: 67  LTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIK------SFAGLEPLAETLEEL 118
           L   E+L LS N I  +       L++L++L L            +F  L      L  L
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL----PNLRIL 78

Query: 119 WVSYNYIEK--TKGIGVMRKLKVLYMS-NNLVKEWAEFVKLGECPSLIDLVFCGNPLVEG 175
            +  + I          +  L  L +    L     +        +L  L    N +   
Sbjct: 79  DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS- 137

Query: 176 MDDPLYKSEVKKRLPNLKKLD 196
               LY      +L +LK +D
Sbjct: 138 ----LYLHPSFGKLNSLKSID 154

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 16/124 (12%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKS-----FAGLEPLA 112
            SS   L   + L L +              L  L++L L  + I       F GL    
Sbjct: 41  ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL---- 96

Query: 113 ETLEELWVSYNYIEK----TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFC 168
             L EL + +  +            ++ L  L +S N ++        G+  SL  + F 
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 169 GNPL 172
            N +
Sbjct: 157 SNQI 160

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 14/117 (11%)

Query: 67  LTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
            ++   L LS   +  +N      LK LKVL+LA N I       F GL    + L+ L 
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL----DNLQVLN 320

Query: 120 VSYNYIEKTKGI--GVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
           +SYN + +        + K+  + +  N +    +         L  L    N L  
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT-FKFLEKLQTLDLRDNALTT 376

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 9e-07
 Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 29/144 (20%)

Query: 69  NCEKLSLSTNMIEKINGLS---GLKKLKVLSLARNNIKS------FAGLEPLAETLEELW 119
               + LS N +E ++ L     +  L++L L +N   S       +       +LE+L+
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP----SLEQLF 457

Query: 120 VSYNYIEKTKGIGV-------MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
           +  N ++      +       +  L+VLY+++N +      V      +L  L    N L
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV-FSHLTALRGLSLNSNRL 516

Query: 173 VEGMDDPLYKSEVKKRLPNLKKLD 196
                + L          NL+ LD
Sbjct: 517 TVLSHNDL--------PANLEILD 532

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKSFAGLEPLAETLEELW 119
                L++ + L L+ N +  +     S L  L+ LSL  N +   +    L   LE L 
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH-NDLPANLEILD 532

Query: 120 VSYNYIEKTKGIGVMRKLKVLYMSNN 145
           +S N +       V   L VL +++N
Sbjct: 533 ISRNQLLAPNP-DVFVSLSVLDITHN 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 22/133 (16%), Positives = 34/133 (25%), Gaps = 18/133 (13%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKIN---GLSGLKKLKVLSLARNNIK-----SFAGLEPLA 112
           D     L    +L LS N I  +        L  LK +  + N I          L+   
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK- 174

Query: 113 ETLEELWVSYNYI--------EKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLID 164
            TL    ++ N +         K         L++L +S N                   
Sbjct: 175 -TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233

Query: 165 LVFCGNPLVEGMD 177
                   + G  
Sbjct: 234 FSLILAHHIMGAG 246

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 21/127 (16%)

Query: 82  KINGLS----GLKKLKVLSLARNNIK-----SFAGLEPLAETLEELWVSYNYIEKTKGIG 132
           +   L+     L   + L L+ N I+     SF  L    E L+ L +   Y   T    
Sbjct: 12  RFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFL----EQLQLLELGSQYTPLTIDKE 67

Query: 133 V---MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRL 189
               +  L++L + ++ +              L +L      L + +          + L
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDA-FQGLFHLFELRLYFCGLSDAVLKD----GYFRNL 122

Query: 190 PNLKKLD 196
             L +LD
Sbjct: 123 KALTRLD 129

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 29/132 (21%)

Query: 66  VLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS-----FAGLEPLAE------- 113
           V      L L  N +     L     L  + L+ N ++      F  ++ L         
Sbjct: 224 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 114 ------------TLEELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECP 160
                       TL+ L +S+N++    +      +L+ LY+ +N +      +KL    
Sbjct: 284 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT----LKLSTHH 339

Query: 161 SLIDLVFCGNPL 172
           +L +L    N  
Sbjct: 340 TLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 16/136 (11%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           S+LA+    E+L  S N I  + G     +L +L L  NN+   A L      L E+ +S
Sbjct: 199 STLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTAWLLNYPG-LVEVDLS 256

Query: 122 YNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDP 179
           YN +EK        M++L+ LY+SNN +     +      P+L  L    N L       
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLY--GQPIPTLKVLDLSHNHL------- 307

Query: 180 LYKSEVKKRLPNLKKL 195
                V++  P   +L
Sbjct: 308 ---LHVERNQPQFDRL 320

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 25/139 (17%), Positives = 56/139 (40%), Gaps = 20/139 (14%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
           L N + ++   + + K+    L   +++++L+L    I+      FA       T+++L+
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA----HTIQKLY 99

Query: 120 VSYNYIEK-TKGIGV-MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177
           + +N I      +   +  L VL +  N +      +     P L  L    N L   ++
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI-FHNTPKLTTLSMSNNNLER-IE 157

Query: 178 DPLYKSEVKKRLPNLKKLD 196
           D  +++       +L+ L 
Sbjct: 158 DDTFQA-----TTSLQNLQ 171

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 17/121 (14%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
             + A     +KL +  N I  +       +  L VL L RN++ S     F        
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT----P 141

Query: 114 TLEELWVSYNYIEK-TKGIGV-MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP 171
            L  L +S N +E+           L+ L +S+N +      V L   PSL       N 
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----VDLSLIPSLFHANVSYNL 197

Query: 172 L 172
           L
Sbjct: 198 L 198

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKING-LSGLKKLKVLSLARNNIKSF-AGLEPLAETLEEL 118
                 +   E+L +S N +  +N     +  LKVL L+ N++           + LE L
Sbjct: 265 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF-DRLENL 323

Query: 119 WVSYNYIEKTKGIGVMRKLKVLYMSNN 145
           ++ +N I  T  +     LK L +S+N
Sbjct: 324 YLDHNSI-VTLKLSTHHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 13/134 (9%)

Query: 63  SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122
            L+++ +    ++S N++     L+    ++ L  + N+I       P+   L  L + +
Sbjct: 181 DLSLIPSLFHANVSYNLLST---LAIPIAVEELDASHNSINVVR--GPVNVELTILKLQH 235

Query: 123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYK 182
           N +  T  +     L  + +S N +++        +   L  L    N LV  ++     
Sbjct: 236 NNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVA-LNLYG-- 291

Query: 183 SEVKKRLPNLKKLD 196
               + +P LK LD
Sbjct: 292 ----QPIPTLKVLD 301

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 25/145 (17%), Positives = 43/145 (29%), Gaps = 20/145 (13%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKINGLS--GLKKLKVLSLARNNIKS-----FAGLEPLAE 113
           DS+L        + +     +   G     L   K+++   + ++               
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF----R 69

Query: 114 TLEELWVSYNYIE--KTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP 171
            +E L ++   IE   T        ++ LYM  N ++     V     P L  LV   N 
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPLLTVLVLERND 128

Query: 172 LVEGMDDPLYKSEVKKRLPNLKKLD 196
           L            +    P L  L 
Sbjct: 129 LSS------LPRGIFHNTPKLTTLS 147

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 57  IEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETL 115
           +  ++     +   + L LS N +  +        +L+ L L  N+I +   L     TL
Sbjct: 284 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-LSTH-HTL 341

Query: 116 EELWVSYNYIEKTKGIGVMRKLKVLYMSNN 145
           + L +S+N  +      + R +    + + 
Sbjct: 342 KNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 16/135 (11%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           + +  LT   KL  ++N I  ++ LS    L  L+   N + +   + PL + L  L   
Sbjct: 58  TGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTK-LTYLNCD 114

Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
            N +     +     L  L  + N + E    + +     L +L    N  +  +D    
Sbjct: 115 TNKL-TKLDVSQNPLLTYLNCARNTLTE----IDVSHNTQLTELDCHLNKKITKLDV--- 166

Query: 182 KSEVKKRLPNLKKLD 196
                     L  LD
Sbjct: 167 -----TPQTQLTTLD 176

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 11/114 (9%)

Query: 63  SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS--FAGLEPLAETLEELWV 120
           S   L     L    + I  + G+  L  L  L    NNI +   +        L  L  
Sbjct: 37  SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQN----TNLTYLAC 92

Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
             N +     +  + KL  L    N + +    + + + P L  L    N L E
Sbjct: 93  DSNKLTNLD-VTPLTKLTYLNCDTNKLTK----LDVSQNPLLTYLNCARNTLTE 141

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 7/110 (6%)

Query: 63  SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122
            ++  T   +L    N       ++   +L  L  + N I     +      L  L    
Sbjct: 143 DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKL-LNRLNCDT 200

Query: 123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
           N I     +    +L  L  S+N + E    + +     L       NPL
Sbjct: 201 NNIT-KLDLNQNIQLTFLDCSSNKLTE----IDVTPLTQLTYFDCSVNPL 245

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 7/108 (6%)

Query: 67  LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
           LT       S N + +++ +S L KL  L   + ++            L           
Sbjct: 232 LTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQ--LIYFQAEGCRKI 288

Query: 127 KTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
           K   +    +L +L      + E    + L + P L+ L      L E
Sbjct: 289 KELDVTHNTQLYLLDCQAAGITE----LDLSQNPKLVYLYLNNTELTE 332

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 10/114 (8%)

Query: 63  SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS--FAGLEPLAETLEELWV 120
            L   T             K   ++   +L +L      I     +        L  L++
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN----PKLVYLYL 325

Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
           +   + +   +    KLK L   N  ++   +F  +G+ P+L +        + 
Sbjct: 326 NNTELTELD-VSHNTKLKSLSCVNAHIQ---DFSSVGKIPALNNNFEAEGQTIT 375

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 21/147 (14%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI----NGLSGLKKLKVLSLARNNIKS----FAGLEPLA 112
                 LT   KLSLS+N +           G   LK L L+ N + +    F GL    
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL---- 100

Query: 113 ETLEELWVSYNYIEKTKGIGV---MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169
           E LE L   ++ +++     V   +R L  L +S+   +     +      SL  L   G
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAG 159

Query: 170 NPLVEGMDDPLYKSEVKKRLPNLKKLD 196
           N   E         ++   L NL  LD
Sbjct: 160 NSFQENFLP-----DIFTELRNLTFLD 181

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 21/154 (13%)

Query: 53  QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKS------F 105
            + F      S    T+ + L LS N +  + +   GL++L+ L    +N+K       F
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 106 AGLEPLAETLEELWVSYNYIEKTKGIGV---MRKLKVLYMSNNLVKEWAEFVKLGECPSL 162
             L      L  L +S+ +  +    G+   +  L+VL M+ N  +E        E  +L
Sbjct: 123 LSL----RNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 163 IDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
             L      L +              L +L+ L+
Sbjct: 178 TFLDLSQCQLEQLSPTAF------NSLSSLQVLN 205

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 14/138 (10%)

Query: 66  VLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAET----LEELW 119
           + ++  +L L +N ++ +       L +L  LSL+ N + SF G    ++     L+ L 
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLD 84

Query: 120 VSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD 178
           +S+N +   +     + +L+ L   ++ +K+ +EF       +LI L           + 
Sbjct: 85  LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144

Query: 179 PLYKSEVKKRLPNLKKLD 196
                     L +L+ L 
Sbjct: 145 IF------NGLSSLEVLK 156

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 14/116 (12%)

Query: 67  LTNCEKLSLSTN-MIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEEL 118
           L++ E L ++ N   E    +  + L+ L  L L++  ++      F  L     +L+ L
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL----SSLQVL 204

Query: 119 WVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
            +S+N      T     +  L+VL  S N +    +        SL  L    N  
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 20/148 (13%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIK----SFAGLEPLAET 114
           +   V    + + +  N ++       L  +KKL +L    N ++    +F     L   
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL--- 355

Query: 115 LEELWVSYNYIEKTKGI-----GVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169
              L ++YN I     I     G   +++ L  ++N +K             +  + F  
Sbjct: 356 -ASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411

Query: 170 NPLVEGMDDPLYK-SEVKKRLPNLKKLD 196
           N +                +  N+  ++
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSIN 439

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 25/171 (14%)

Query: 42  IPISEAKEVGLQM-QFIEKMDSSLAVLTNCEKLSLS-TNMIEKI-NGLSGLKKLKVLSLA 98
                 +    +  Q  +  D     L +   + +     + K+   L  L +++++++A
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281

Query: 99  RNNIKSFAGLE---------PLAETLEELWVSYNYIE---KTKGIGVMRKLKVLYMSNN- 145
            N   S   L+         P+ E ++ +++ YN ++       +  M+KL +L    N 
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341

Query: 146 LVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
           L  +   F   G    L  L    N + E        +        ++ L 
Sbjct: 342 LEGKLPAF---GSEIKLASLNLAYNQITEI------PANFCGFTEQVENLS 383

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 13/108 (12%)

Query: 51  GLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSF--- 105
            +  +  + +D +     N   ++LS N I K      S    L  ++L  N +      
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 106 -AGLEPLA----ETLEELWVSYNYIEK---TKGIGVMRKLKVLYMSNN 145
               E         L  + + +N + K         +  L  + +S N
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 13/107 (12%)

Query: 51  GLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKSF-- 105
            +    ++  + +         + L  N + K+      + L  L  + L+ N+   F  
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT 530

Query: 106 -----AGLEPLAETLEELWVSYNYIEKT--KGIGVMRKLKVLYMSNN 145
                + L+       +     N   +   +GI +   L  L + +N
Sbjct: 531 QPLNSSTLKGF-GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 16/125 (12%), Positives = 39/125 (31%), Gaps = 19/125 (15%)

Query: 67  LTNCEKLSLSTNMIEKING---------LSGLKKLKVLSLARNNIKSF-AGLEPLAETLE 116
           ++    +  S N I  ++G               +  ++L+ N I  F   L      L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 117 ELWVSYNYIE---------KTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVF 167
            + +  N +          + +       L  + +  N + + ++  +    P L+ +  
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 168 CGNPL 172
             N  
Sbjct: 521 SYNSF 525

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEEL 118
           D     L N   L L  N I KI     + L KL+ L L++N +K     E + +TL+EL
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP--EKMPKTLQEL 126

Query: 119 WVSYNYIEK-TKGI-GVMRKLKVLYMSNNLVKE 149
            V  N I K  K +   + ++ V+ +  N +K 
Sbjct: 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 21/142 (14%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI----NGLSGLKKLKVLSLARNNIKSFAGLEPLA-ETL 115
            S    L     + L TN ++          G+KKL  + +A  NI +   +      +L
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGLPPSL 194

Query: 116 EELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLV 173
            EL +  N I K     +  +  L  L +S N +        L   P L +L    N L 
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKL- 252

Query: 174 EGMDDPLYKSEVKKRLPNLKKL 195
                     +V   L + K +
Sbjct: 253 ---------VKVPGGLADHKYI 265

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 14/98 (14%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAE- 113
           + SLA   +  +L L+ N + K+  GL+  K ++V+ L  NNI +     F       + 
Sbjct: 233 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292

Query: 114 -TLEELWVSYNYIEKTKGI-----GVMRKLKVLYMSNN 145
            +   + +  N + +   I       +     + + N 
Sbjct: 293 ASYSGVSLFSNPV-QYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 19/82 (23%)

Query: 57  IEKMDSSLAVLTNCEKLSLSTNMIEKING--------LSGLKKLKVLSLARNNIK----- 103
           + K+   LA     + + L  N I  I           +       +SL  N ++     
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 104 --SFAGLEPLAETLEELWVSYN 123
             +F  +         + +   
Sbjct: 312 PSTFRCV----YVRAAVQLGNY 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 18/132 (13%)

Query: 53  QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----F 105
              +++ M  +     N   LS++   +  +    +  L  L+ L+L+ N I +      
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 106 AGLEPLAETLEELWVSYNYIEK-TKGIGV-MRKLKVLYMSNNLVKEWAE--FVKLGECPS 161
             L      L+E+ +    +          +  L+VL +S N +    E  F  +    +
Sbjct: 269 HEL----LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV---GN 321

Query: 162 LIDLVFCGNPLV 173
           L  L+   NPL 
Sbjct: 322 LETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 26/148 (17%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS------FAGLEPLA 112
             +L+ L     L L    I  I       L +LKVL ++              GL    
Sbjct: 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL---- 224

Query: 113 ETLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAE--FVKLGECPSLIDLVFC 168
             L  L +++  +       +  +  L+ L +S N +         +L     L ++   
Sbjct: 225 -NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL---LRLQEIQLV 280

Query: 169 GNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
           G  L              + L  L+ L+
Sbjct: 281 GGQLAVVEPYAF------RGLNYLRVLN 302

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 32/165 (19%), Positives = 51/165 (30%), Gaps = 36/165 (21%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
               A   + E+L L+ N++  +     + L  L+ L L  N +K      F GL  L +
Sbjct: 49  QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108

Query: 114 --------------------TLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWA 151
                                L+ L V  N +     +    +  L+ L +    +    
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168

Query: 152 EFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
               L     LI L      +    D         KRL  LK L+
Sbjct: 169 TEA-LSHLHGLIVLRLRHLNINAIRDYSF------KRLYRLKVLE 206

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 20/139 (14%)

Query: 67  LTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
           L N + L +  N +  I+    SGL  L+ L+L + N+ S      + L      L  L 
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL----HGLIVLR 182

Query: 120 VSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177
           + +  I          + +LKVL +S+    +      L    +L  L      L     
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPY 241

Query: 178 DPLYKSEVKKRLPNLKKLD 196
             +      + L  L+ L+
Sbjct: 242 LAV------RHLVYLRFLN 254

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 27/169 (15%)

Query: 41  GIPISEAKEVGLQMQFIEK-MDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSL 97
           GIP + ++ + L    I     +S     N   L L +N++ +I     +GL  L+ L L
Sbjct: 29  GIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 98  ARNN-IKS-----FAGLEPLAETLEELWVSYNYIEK-TKGI-GVMRKLKVLYMSNNLVKE 149
           + N  ++S     F GL      L  L +    +++   G+   +  L+ LY+ +N ++ 
Sbjct: 88  SDNAQLRSVDPATFHGL----GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 150 WAE--FVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
             +  F  L    +L  L   GN +    +         + L +L +L 
Sbjct: 144 LPDDTFRDL---GNLTHLFLHGNRISSVPERAF------RGLHSLDRLL 183

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
           D +   L N   L L  N I  +      GL  L  L L +N +       F  L     
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL----G 201

Query: 114 TLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNN 145
            L  L++  N +    T+ +  +R L+ L +++N
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
           + +   LTN   L LS N +  I+      +  L+ L L+ N++ +     F+ L    +
Sbjct: 57  EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL----Q 112

Query: 114 TLEELWVSYNYIEKTKGIGV---MRKLKVLYMSNNLVK--EWAEFVKLGECPSLIDLVFC 168
            LE L +  N+I           M +L+ LY+S N +            + P L+ L   
Sbjct: 113 ALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171

Query: 169 GNPL 172
            N L
Sbjct: 172 SNKL 175

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 14/116 (12%)

Query: 67  LTNCEKLSLSTNMIEKING---LSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEEL 118
           L   ++L+++ N+I+        S L  L+ L L+ N I+S        L  +      L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 119 WVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAE--FVKLGECPSLIDLVFCGNP 171
            +S N +     G     +LK L +  N +K   +  F +L    SL  +    NP
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRL---TSLQKIWLHTNP 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 21/145 (14%)

Query: 41  GIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSL 97
            +P S  K + L    +  + S S       + L LS   I+ I       L  L  L L
Sbjct: 25  NLPFS-TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 98  ARNNIKS-----FAGLEPLAETLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNL---V 147
             N I+S     F+GL     +L++L      +       IG ++ LK L +++NL    
Sbjct: 84  TGNPIQSLALGAFSGL----SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 148 KEWAEFVKLGECPSLIDLVFCGNPL 172
           K    F  L    +L  L    N +
Sbjct: 140 KLPEYFSNL---TNLEHLDLSSNKI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 20/94 (21%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS------FAGLEPLAETLEEL 118
           L++ +KL      +  +    +  LK LK L++A N I+S      F+ L      LE L
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL----TNLEHL 154

Query: 119 WVSYNYIEKTKGIGVMRKLK-------VLYMSNN 145
            +S N I ++     +R L         L +S N
Sbjct: 155 DLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLN 187

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 5e-08
 Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 67  LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
               E ++   N +  +  L     L+VLS+  N +     L  L E+LE L VS N +E
Sbjct: 139 PALLEYINADNNQLTMLPEL--PTSLEVLSVRNNQLTF---LPELPESLEALDVSTNLLE 193

Query: 127 K-TKGIGVMRKLK----VLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
                       +          N +    E   +        ++   NPL  
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITHIPE--NILSLDPTCTIILEDNPLSS 244

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 60  MDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLE 116
             +  A     + L LS N +             +L  L+L+   +K     + L   L 
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV--PKGLPAKLS 277

Query: 117 ELWVSYNYIEKTKGIGVMRKLKVLYMSNN 145
            L +SYN +++      + ++  L +  N
Sbjct: 278 VLDLSYNRLDRNPSPDELPQVGNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 13/116 (11%)

Query: 67  LTNCEKLSLSTNMIEKING-----LSGLKKLKVLSLARNNIKSFAGLEPLA--ETLEELW 119
               + L+L    +E  +G      +   +L+ L L+ N+++  AG         L  L 
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 120 VSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
           +S+  +++  KG+    KL VL +S N +          E P + +L   GNP ++
Sbjct: 260 LSFTGLKQVPKGLP--AKLSVLDLSYNRLD---RNPSPDELPQVGNLSLKGNPFLD 310

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 20/118 (16%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
            T+ E+L+L+ N I KI  N   GL  L  L+L++N + S     F  L    + LE L 
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL----DKLEVLD 353

Query: 120 VSYNYIEKTKGIGV---MRKLKVLYMSNNLVKEWAE--FVKLGECPSLIDLVFCGNPL 172
           +SYN+I +  G      +  LK L +  N +K   +  F +L    SL  +    NP 
Sbjct: 354 LSYNHI-RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL---TSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 22/127 (17%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKS-----FAGLEPLA 112
           ++S + L + + L +       +   N   GL  L +L L  N         F GL    
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL---- 102

Query: 113 ETLEELWVSYNYIEKTK-GIGV---MRKLKVLYMSNN---LVKEWAEFVKLGECPSLIDL 165
             LE L ++   ++           +  L++L + +N    ++  + F+ +        L
Sbjct: 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM---RRFHVL 159

Query: 166 VFCGNPL 172
               N +
Sbjct: 160 DLTFNKV 166

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 15/88 (17%)

Query: 68  TNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWV 120
           +  +   LS + I  +  +  S    L+ L+LA+N I       F GL      L +L +
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL----THLLKLNL 330

Query: 121 SYNYIEKTKGIGV---MRKLKVLYMSNN 145
           S N++  +    +   + KL+VL +S N
Sbjct: 331 SQNFL-GSIDSRMFENLDKLEVLDLSYN 357

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 38.6 bits (90), Expect = 9e-04
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 25/147 (17%)

Query: 67  LTNCEKLSLSTNMIEKI----NGLSGLKKLKVLSLARNNIKS------FAGLEPLAETLE 116
           L N E L+L+   ++      N    L  L++L L  NNIK       F  +        
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM----RRFH 157

Query: 117 ELWVSYNYI----EKTKGIGVMRKLKVLYMSNN-------LVKEWAEFVKLGECPSLIDL 165
            L +++N +    E+       +   +L +S+            W +     +  S+  L
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217

Query: 166 VFCGNPLVEGMDDPLYKSEVKKRLPNL 192
              GN   E M    + +    ++ +L
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSL 244

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 53  QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKSFAGLE 109
           Q++ + K+      + + ++L +S N +         S  K L  L+++ N +       
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-FR 417

Query: 110 PLAETLEELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFC 168
            L   ++ L +  N I+   K +  +  L+ L +++N +K   + +      SL  +   
Sbjct: 418 CLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI-FDRLTSLQKIWLH 476

Query: 169 GNPL 172
            NP 
Sbjct: 477 TNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 67  LTNCEKLSLSTNMIEKINGLSG----LKKLKVLSLARNNIKSFAGLEPLA--ETLEELWV 120
           LT  E L L  N +++++ ++     +K L+ L +++N++         +  ++L  L +
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNN 145
           S N +  T    +  ++KVL + +N
Sbjct: 407 SSNILTDTIFRCLPPRIKVLDLHSN 431

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 14/90 (15%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAE------TLEEL 118
           ++    L  S N++          L +L+ L L  N +K    L  +AE      +L++L
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE---LSKIAEMTTQMKSLQQL 379

Query: 119 WVSYNYIEKTKGIGV---MRKLKVLYMSNN 145
            +S N +   +  G     + L  L MS+N
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 18/135 (13%)

Query: 68  TNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWV 120
                L++S N I ++    +  L KL++L ++ N I+      F       + LE L +
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN----QELEYLDL 76

Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNNL---VKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177
           S+N +           LK L +S N    +    EF  +     L  L      L +   
Sbjct: 77  SHNKL-VKISCHPTVNLKHLDLSFNAFDALPICKEFGNM---SQLKFLGLSTTHLEKSSV 132

Query: 178 DPLYKSEVKKRLPNL 192
            P+    + K L  L
Sbjct: 133 LPIAHLNISKVLLVL 147

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS--FAGLEPLAETLEELWVSY 122
           L+    L +S N I+ +  +     ++L+ L L+ N +              L+ L +S+
Sbjct: 44  LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPT----VNLKHLDLSF 99

Query: 123 NYIEKTKGIGV---MRKLKVLYMSNN 145
           N  +          M +LK L +S  
Sbjct: 100 NAFDALPICKEFGNMSQLKFLGLSTT 125

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 23/141 (16%)

Query: 67  LTNCEKLSLSTNMIEKINGL--SGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
            +N    + + +    ++ L  S +     L  + N +          L      LE L 
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL----TELETLI 354

Query: 120 VSYNYIEK-TKGIGV---MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEG 175
           +  N +++ +K   +   M+ L+ L +S N V    +        SL+ L    N L + 
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 176 MDDPLYKSEVKKRLPNLKKLD 196
           +   L         P +K LD
Sbjct: 415 IFRCL--------PPRIKVLD 427

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 14/121 (11%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNI-----KSFAGLEPLAET- 114
            ++      E L+L+ N +  +   ++ L +L+ LS+          +  A  +   E  
Sbjct: 121 DTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 115 ----LEELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169
               L+ L + +  I      I  ++ LK L + N+ +        +   P L +L   G
Sbjct: 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDLRG 238

Query: 170 N 170
            
Sbjct: 239 C 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEELW 119
                L N + L L    I  +   ++ L+ LK L +  + + +    +  L   LEEL 
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL-PKLEELD 235

Query: 120 VSY-NYIEK-TKGIGVMRKLKVLYMSNN 145
           +     +       G    LK L + + 
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 18/121 (14%), Positives = 46/121 (38%), Gaps = 16/121 (13%)

Query: 67  LTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEELWVSYN- 123
           L++ + +++    + ++ + +     L+ L+LARN +++  A +  L   L EL +    
Sbjct: 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASL-NRLRELSIRACP 161

Query: 124 ----------YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLV 173
                       + +     +  L+ L +    ++       +    +L  L    +PL 
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA--SIANLQNLKSLKIRNSPLS 219

Query: 174 E 174
            
Sbjct: 220 A 220

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 12/119 (10%)

Query: 67  LTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEELWVSYNY 124
                 L L +  + +  +    L  L+ +++    +      ++  A  LE L ++ N 
Sbjct: 80  QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAG-LETLTLARNP 138

Query: 125 IEK-TKGIGVMRKLKVLYMS--NNLVK------EWAEFVKLGECPSLIDLVFCGNPLVE 174
           +      I  + +L+ L +     L +            +     +L  L      +  
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS 197

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 34/169 (20%), Positives = 57/169 (33%), Gaps = 26/169 (15%)

Query: 41  GIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSL 97
           G+     K + L    I  + +S L    N + L L++N I  I     S L  L+ L L
Sbjct: 49  GLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107

Query: 98  ARNNIKS-----FAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAE 152
           + N + +     F  L     +L  L +  N  +      +   L  L +          
Sbjct: 108 SYNYLSNLSSSWFKPL----SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG--NMDT 161

Query: 153 FVKLGE-----CPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
           F K+          L +L    + L        Y+ +  K + N+  L 
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQS------YEPKSLKSIQNVSHLI 204

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 20/147 (13%), Positives = 51/147 (34%), Gaps = 29/147 (19%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
           LT  E+L +  + ++      L  ++ +  L L                      +E L 
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS----VECLE 228

Query: 120 VSYNYIEK----------TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169
           +    ++           T  +      + + +++  + +  +   L +   L++L F  
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL--LNQISGLLELEFSR 286

Query: 170 NPLVEGMDDPLYKSEVKKRLPNLKKLD 196
           N L + + D ++       L +L+K+ 
Sbjct: 287 NQL-KSVPDGIFDR-----LTSLQKIW 307

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 26/126 (20%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKING---LSGLKKLKVLSLARNNI-----KSFAGLEPLAE 113
            +++  T  + L++S+N   +  G      LK L+ LSLA N          +G      
Sbjct: 241 RAISTCTELKLLNISSN---QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACD--- 294

Query: 114 TLEELWVSYNYIEKT--KGIGVMRKLKVLYMSNN-----LVKEWAEFVKLGECPSLIDLV 166
           TL  L +S N+         G    L+ L +S+N     L  +      L +   L  L 
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT-----LLKMRGLKVLD 349

Query: 167 FCGNPL 172
              N  
Sbjct: 350 LSFNEF 355

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 15/123 (12%)

Query: 62  SSLAVLTNCEKLSLSTNMIE-KINGLSGLKKLKVLSLARNNIKSFAGLEPLAET------ 114
           SSL  LT  E L LS + I   ++G      L  L L+RN+    +G      +      
Sbjct: 71  SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS---LSGPVTTLTSLGSCSG 127

Query: 115 LEELWVSYNYIEKT---KGIGVMRKLKVLYMS-NNLVKE-WAEFVKLGECPSLIDLVFCG 169
           L+ L VS N ++      G   +  L+VL +S N++       +V    C  L  L   G
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 170 NPL 172
           N +
Sbjct: 188 NKI 190

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 19/123 (15%)

Query: 62  SSLAVLTNCEKLSLSTNMIE---KINGLSGLKKLKVLSLARNNI-----KSFAGLEPLAE 113
           +SL   +  + L++S+N ++   K++G   L  L+VL L+ N+I       +   +   E
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179

Query: 114 TLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFV----KLGECPSLIDLVFCG 169
            L+ L +S N I     +     L+ L +S+N       F      LG+C +L  L   G
Sbjct: 180 -LKHLAISGNKISGDVDVSRCVNLEFLDVSSN------NFSTGIPFLGDCSALQHLDISG 232

Query: 170 NPL 172
           N L
Sbjct: 233 NKL 235

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 24/123 (19%)

Query: 62  SSLAVLTNCEKLSLSTNMIE-KI-NGLSGLKKLKVLSLARNNI-----KSFAGLEPLAET 114
           SSL  L+    L L  NM+E +I   L  +K L+ L L  N++        +        
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT----N 491

Query: 115 LEELWVSYNYIEKT--KGIGVMRKLKVLYMSNNLVKEWAEF-----VKLGECPSLIDLVF 167
           L  + +S N +     K IG +  L +L +SNN       F      +LG+C SLI L  
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNN------SFSGNIPAELGDCRSLIWLDL 545

Query: 168 CGN 170
             N
Sbjct: 546 NTN 548

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 28/126 (22%), Positives = 42/126 (33%), Gaps = 22/126 (17%)

Query: 62  SSLAVLTNCEKLSLSTNM----IEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAE---T 114
           S      +   L LS N     +  +  L     LK L+++ N +  F G         +
Sbjct: 94  SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNS 152

Query: 115 LEELWVSYNYIEKT-----KGIGVMRKLKVLYMSNNLVKEWAEF---VKLGECPSLIDLV 166
           LE L +S N I               +LK L +S N      +    V +  C +L  L 
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN------KISGDVDVSRCVNLEFLD 206

Query: 167 FCGNPL 172
              N  
Sbjct: 207 VSSNNF 212

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 18/115 (15%)

Query: 41  GIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLAR 99
            +P      + L    +     + L   T   +L+L    + K+     L  L  L L+ 
Sbjct: 28  DLPKD-TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH 86

Query: 100 NNIKS----FAGLEPLAETLEELWVSYNYIEKTKGI--GV---MRKLKVLYMSNN 145
           N ++S       L      L  L VS+N +     +  G    + +L+ LY+  N
Sbjct: 87  NQLQSLPLLGQTL----PALTVLDVSFNRLTS---LPLGALRGLGELQELYLKGN 134

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 15/89 (16%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
           L     L +S N +  +    L GL +L+ L L  N +K+               LE+L 
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT----PKLEKLS 154

Query: 120 VSYNYIEKTKGIGV---MRKLKVLYMSNN 145
           ++ N + +    G+   +  L  L +  N
Sbjct: 155 LANNNLTELPA-GLLNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 12/87 (13%)

Query: 67  LTNCEKLSLSTNMIEKI-NGL-SGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
           L   ++L L  N ++ +  GL +   KL+ LSLA NN+         GL    E L+ L 
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL----ENLDTLL 178

Query: 120 VSYNYIEKT-KGIGVMRKLKVLYMSNN 145
           +  N +    KG      L   ++  N
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGN 205

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 15/118 (12%)

Query: 66  VLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNN-IKS-----FAGLEPLAETLEE 117
           +  + + L L    +  I  +  S L  +  + ++ +  ++      F  L      +  
Sbjct: 29  LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS----KVTH 84

Query: 118 LWVSYNYIEKTKGIGV---MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
           + +                +  LK L + N  +K + +  K+        L    NP 
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 13/83 (15%)

Query: 71  EKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNI------KSFAGLEPLAETLEELWVSY 122
             L L  N    +     +G K L  + L +N         +F G+         L VS 
Sbjct: 159 LTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVY---SGPSLLDVSQ 214

Query: 123 NYIEKTKGIGVMRKLKVLYMSNN 145
             +        +  LK L   N 
Sbjct: 215 TSVTALPS-KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 67  LTNCEKLSLS-TNMIEKING--LSGLKKLKVLSLARNNIKSFAGLE--PLAETLEELWVS 121
           L+    + +  T  +  I+   L  L  LK L +    +K F  L      +    L ++
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT 138

Query: 122 YN----YIEKTKGIGVMRKLKVLYMSNN 145
            N     I      G+  +   L + NN
Sbjct: 139 DNPYMTSIPVNAFQGLCNETLTLKLYNN 166

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.6 bits (113), Expect = 8e-07
 Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 68  TNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWV 120
              + LSLS N I ++    +S L +L+VL L+ N I+S     F       + LE L V
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN----QDLEYLDV 107

Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNNL---VKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177
           S+N + +      M  L+ L +S N    +    EF  L     L  L        +   
Sbjct: 108 SHNRL-QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNL---TKLTFLGLSAAKFRQLDL 163

Query: 178 DPLYKSEVKKRLPNLKKLDGEVLPE 202
            P+    +   L +L     +    
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGET 188

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 30/109 (27%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-------------------- 104
            ++   L+ + N+       G S LK+L+ L L RN +K+                    
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411

Query: 105 --------FAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNN 145
                   +      AE++  L +S N +  +    +  K+KVL + NN
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN 460

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 67  LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
            +  ++L +S N +  +  L    +LK L ++ N + S   L  L   L  L V  N + 
Sbjct: 220 PSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTS---LPMLPSGLLSLSVYRNQLT 274

Query: 127 K-TKGIGVMRKLKVLYMSNN 145
           +  + +  +     + +  N
Sbjct: 275 RLPESLIHLSSETTVNLEGN 294

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 28/109 (25%), Positives = 39/109 (35%), Gaps = 11/109 (10%)

Query: 67  LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
            +   KL    N +  +  L     LK L ++ N + S   L  L   L+EL VS N + 
Sbjct: 200 PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTS---LPVLPSELKELMVSGNRLT 254

Query: 127 KT-KGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
                      L  L +  N +    E   L    S   +   GNPL E
Sbjct: 255 SLPMLPS---GLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEGNPLSE 298

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 24/131 (18%)

Query: 67  LTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYI 125
                 L +S N +  +     GL +L + S    +      L  L   L +LW+  N +
Sbjct: 80  PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH------LPALPSGLCKLWIFGNQL 133

Query: 126 EKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEV 185
             T    +   L+ L +S+N +              L  L    N L          + +
Sbjct: 134 --TSLPVLPPGLQELSVSDNQLASLPA-----LPSELCKLWAYNNQL----------TSL 176

Query: 186 KKRLPNLKKLD 196
                 L++L 
Sbjct: 177 PMLPSGLQELS 187

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 16/108 (14%)

Query: 67  LTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYI 125
            +  ++LS+S N +  +    S L KL   +   N + S   L  L   L+EL VS N +
Sbjct: 180 PSGLQELSVSDNQLASLPTLPSELYKLWAYN---NRLTS---LPALPSGLKELIVSGNRL 233

Query: 126 EK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
                      +LK L +S N +              L+ L    N L
Sbjct: 234 TSLPVLPS---ELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQL 273

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 24/132 (18%)

Query: 66  VLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEELWVSYNY 124
           +  +   L +  N +  +   +   +L+ L ++ N + S       L E L        +
Sbjct: 59  LPAHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSLPVLPPGLLE-LSIFSNPLTH 115

Query: 125 IEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSE 184
           +       +   L  L++  N +            P L +L    N L          + 
Sbjct: 116 LPA-----LPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQL----------AS 155

Query: 185 VKKRLPNLKKLD 196
           +      L KL 
Sbjct: 156 LPALPSELCKLW 167

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 68  TNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWV 120
               ++ L  N I+ I     S  KKL+ + L+ N I       F GL     +L  L +
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL----RSLNSLVL 87

Query: 121 SYNYIEKTKGIGV---MRKLKVLYMSNN 145
             N I       +   +  L++L ++ N
Sbjct: 88  YGNKI-TELPKSLFEGLFSLQLLLLNAN 114

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 20/118 (16%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
                ++ LS N I ++  +   GL+ L  L L  N I       F GL     +L+ L 
Sbjct: 55  YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL----FSLQLLL 110

Query: 120 VSYNYIEKTKGIGV---MRKLKVLYMSNNLVKEWAE--FVKLGECPSLIDLVFCGNPL 172
           ++ N I   + +     +  L +L + +N ++  A+  F  L    ++  +    NP 
Sbjct: 111 LNANKINCLR-VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL---RAIQTMHLAQNPF 164

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 23/181 (12%), Positives = 54/181 (29%), Gaps = 27/181 (14%)

Query: 40  NGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLK 93
           NG+      ++  +      ++           +    N +E              + L 
Sbjct: 132 NGLGPQAGAKIA-RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190

Query: 94  VLSLARNNIKSFAGLEPLAE------TLEELWVSYNYIEKT------KGIGVMRKLKVLY 141
            + + +N I+       L E       L+ L +  N             +     L+ L 
Sbjct: 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250

Query: 142 MSNNL-----VKEWAEFVKLGECPSLIDLVFCGNPL-VEGMDDPLYKSEVKKRLPNLKKL 195
           +++ L          +     E   L  L    N + ++ +   L    + +++P+L  L
Sbjct: 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT-LKTV-IDEKMPDLLFL 308

Query: 196 D 196
           +
Sbjct: 309 E 309

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 32/174 (18%), Positives = 51/174 (29%), Gaps = 44/174 (25%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKIN------------GLSGLKKLKVLSLARNNIKSFAGLE 109
            ++A   + E    S     ++              L    KL  + L+ N        E
Sbjct: 54  ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP-TAQE 112

Query: 110 PLAE------TLEELWVSYNYI---------------EKTKGIGVMRKLKVLYMSNNL-- 146
           PL +       LE L++  N +                  K       L+ +    N   
Sbjct: 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172

Query: 147 ---VKEWAEFVKLGECPSLIDLVFCGNPL-VEGMDDPLYKSEVKKRLPNLKKLD 196
              +KEWA+         L  +    N +  EG++  L   E       LK LD
Sbjct: 173 NGSMKEWAKT--FQSHRLLHTVKMVQNGIRPEGIEHLL--LEGLAYCQELKVLD 222

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 39/171 (22%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNI-----KSFAGLEP 110
           + L    + +++ LS N I           ++  K L++   +         +    L  
Sbjct: 26  AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85

Query: 111 LAE------TLEELWVSYNYIEKT------KGIGVMRKLKVLYMSNN------------L 146
           L +       L  + +S N    T        +     L+ LY+ NN             
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 147 VKEWAEFVKLGECPSLIDLVFCGNPL-VEGMDDPLYKSEVKKRLPNLKKLD 196
           ++E A   K    P L  ++   N L    M      ++  +    L  + 
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSM---KEWAKTFQSHRLLHTVK 193

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 16/118 (13%)

Query: 65  AVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS------FAGLEPLAETLE 116
            +  N  +L      +  I     SG   L+ + +++N++        F+ L      L 
Sbjct: 27  DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL----PKLH 82

Query: 117 ELWVS-YNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP 171
           E+ +   N +     +    +  L+ L +SN  +K   +  K+      + L    N 
Sbjct: 83  EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH-SLQKVLLDIQDNI 139

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 67  LTNCEKLSLS-TNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAET-LEELWVSY 122
           L    ++ +   N +  I       L  L+ L ++   IK    +  +       L +  
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

Query: 123 N----YIEKTKGIGVMRKLKVLYMSNN 145
           N     IE+   +G+  +  +L+++ N
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKN 164

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 17/94 (18%)

Query: 62  SSLAVLTNCEKLSLSTNMIE-KINGLSGLKKLKVLSLARNNI-----KSFAGLEPLAETL 115
                  N +K+ L+ N +   +  +   K L  L L  N I     +    L    + L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL----KFL 270

Query: 116 EELWVSYNYIEKTKG----IGVMRKLKVLYMSNN 145
             L VS+N +    G     G +++  V   +NN
Sbjct: 271 HSLNVSFNNLC---GEIPQGGNLQRFDVSAYANN 301

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 15/89 (16%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
           LT    L L+ N ++ +       LK L+ L +  N +++     F  L      L EL 
Sbjct: 60  LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQL----VNLAELR 115

Query: 120 VSYNYIEKTKGIGV---MRKLKVLYMSNN 145
           +  N ++      V   + KL  L +  N
Sbjct: 116 LDRNQLKSLPP-RVFDSLTKLTYLSLGYN 143

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 15/88 (17%)

Query: 68  TNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWV 120
            + +KL L +N +  +       L KL++L L  N +++     F  L    + LE LWV
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL----KNLETLWV 92

Query: 121 SYNYIEKTKGIGV---MRKLKVLYMSNN 145
           + N + +   IGV   +  L  L +  N
Sbjct: 93  TDNKL-QALPIGVFDQLVNLAELRLDRN 119

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 67  LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
           L N E L ++ N ++ +       L  L  L L RN +KS     F  L      L  L 
Sbjct: 84  LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL----TKLTYLS 139

Query: 120 VSYNYIEKTKGIGVMRK---LKVLYMSNN 145
           + YN + ++   GV  K   LK L + NN
Sbjct: 140 LGYNEL-QSLPKGVFDKLTSLKELRLYNN 167

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 16/89 (17%)

Query: 68  TNCEKLSLSTNMIEKIN---GLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
               +L L+ N    +        L +L+ ++ + N I       F G       + E+ 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA----SGVNEIL 87

Query: 120 VSYNYIEKTKGIGV---MRKLKVLYMSNN 145
           ++ N +E  +   +   +  LK L + +N
Sbjct: 88  LTSNRLENVQH-KMFKGLESLKTLMLRSN 115

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 18/117 (15%)

Query: 41  GIPISEAKEVGLQMQFIEKMDSS--LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLS 96
            IP     E+ L       ++++     L    K++ S N I  I      G   +  + 
Sbjct: 29  HIP-QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87

Query: 97  LARNNIKS-----FAGLEPLAETLEELWVSYNYIEKTKGIGV---MRKLKVLYMSNN 145
           L  N +++     F GL    E+L+ L +  N I           +  +++L + +N
Sbjct: 88  LTSNRLENVQHKMFKGL----ESLKTLMLRSNRITCVG-NDSFIGLSSVRLLSLYDN 139

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 17/103 (16%)

Query: 53  QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----F 105
           ++  IE  + +    +   ++ L++N +E +      GL+ LK L L  N I       F
Sbjct: 68  KITDIE--EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125

Query: 106 AGLEPLAETLEELWVSYNYIEKTKGIGV---MRKLKVLYMSNN 145
            GL     ++  L +  N I  T   G    +  L  L +  N
Sbjct: 126 IGL----SSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLAN 163

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 33/158 (20%), Positives = 47/158 (29%), Gaps = 30/158 (18%)

Query: 64  LAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFAGLEPLAE---- 113
           L   +    L +    I           L   + LK LSLA N +    G   L E    
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD-EGARLLCETLLE 310

Query: 114 ---TLEELWVSYNYIEKT------KGIGVMRKLKVLYMSNNL-----VKEWAEFVKLGEC 159
               LE LWV                +   R L  L +SNN      V+E  + +     
Sbjct: 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370

Query: 160 PSLIDLVFCGNPL-VEGMDDPLYKSEVKKRLPNLKKLD 196
             L  L      +        L  +       +L++LD
Sbjct: 371 -VLRVLWLADCDVSDSSCSS-L--AATLLANHSLRELD 404

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 28/157 (17%)

Query: 64  LAVLTNCEKLSLSTNMI-----EKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAE---- 113
           L +L  C+ + L    +     + I + L     L  L+L  N +    G+  + +    
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD-VGVHCVLQGLQT 82

Query: 114 ---TLEELWVSYNYIEKT------KGIGVMRKLKVLYMSNNL-----VKEWAEFVKLGEC 159
               +++L +    +           +  +  L+ L++S+NL     ++   E +   +C
Sbjct: 83  PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142

Query: 160 PSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
             L  L      L     +PL  + V +  P+ K+L 
Sbjct: 143 -RLEKLQLEYCSLSAASCEPL--ASVLRAKPDFKELT 176

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 28/149 (18%)

Query: 71  EKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFAGLEPLAE-------TLEE 117
           E L + +            + L+  + L  L ++ N ++  AG+  L +        L  
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQPGSVLRV 374

Query: 118 LWVSYNYIEKT------KGIGVMRKLKVLYMSNNL-----VKEWAEFVKLGECPSLIDLV 166
           LW++   +  +        +     L+ L +SNN      + +  E V+   C  L  LV
Sbjct: 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC-LLEQLV 433

Query: 167 FCGNPLVEGMDDPLYKSEVKKRLPNLKKL 195
                  E M+D L    ++K  P+L+ +
Sbjct: 434 LYDIYWSEEMEDRL--QALEKDKPSLRVI 460

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 61  DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEEL 118
              L  L     L++  + +  +  +      +L  L+L+ N ++S +       +L+EL
Sbjct: 49  LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL 108

Query: 119 WVSYN 123
            +S N
Sbjct: 109 VLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 20/110 (18%)

Query: 75  LSTNMIEKINGLSGLKKLKVLSLARNNI------KSFAGLEPLAETLEELWVSYN---YI 125
                ++ ++ L G + L  L +           +   GL      L  L +  +   ++
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGL----GELRNLTIVKSGLRFV 71

Query: 126 EKTKGIGVMRKLKVLYMSNNLVK--EWAEFVKLGECPSLIDLVFCGNPLV 173
                     +L  L +S N ++   W     L    SL +LV  GNPL 
Sbjct: 72  APDAFHF-TPRLSRLNLSFNALESLSWKTVQGL----SLQELVLSGNPLH 116

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 38.2 bits (89), Expect = 9e-04
 Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 27/152 (17%)

Query: 71  EKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFAGLEPLAE------TLEEL 118
             L LS N +          GL+G   +  LSL    +    GLE LA        L+EL
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD-EGLELLAAQLDRNRQLQEL 216

Query: 119 WVSYNYIEKT------KGIGVMRKLKVLYMSNNL-----VKEWAEFVKLGECPSLID-LV 166
            V+YN    T      +       L++L++  N       +   +     E  + +   +
Sbjct: 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSL 276

Query: 167 FCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGE 198
             G  + E     L  SEV++ L +  +   +
Sbjct: 277 TEGTAVSEYWSVIL--SEVQRNLNSWDRARVQ 306

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.78
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.75
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.74
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.74
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.72
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.72
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.7
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.7
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.69
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.68
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.68
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.68
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.65
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.65
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.64
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.64
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.64
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.63
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.63
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.63
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.63
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.62
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.62
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.62
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.6
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.6
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.6
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.6
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.59
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.59
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.59
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.59
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.59
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.59
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.59
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.57
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.57
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.57
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.57
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.56
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.56
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.56
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.53
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.52
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.51
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.5
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.49
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.47
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.47
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.46
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.46
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.43
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.43
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.42
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.39
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.39
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.39
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.38
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.38
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.34
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.31
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.24
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.22
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.15
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	99.1
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.75
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.75
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.54
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.44
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.21
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.9
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.49
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.48
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.46
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.39
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.35
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.31
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.29
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.28
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.14
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.96

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.84  E-value=8.7e-23  Score=150.05  Aligned_cols=178  Identities=48%  Similarity=0.754  Sum_probs=153.3

Q ss_pred             cCc-cHHHHHhhhhhhcCCCCCCceEEEccCc--cccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCcc
Q psy14661         25 AKP-NLKDALKKWEEENGIPISEAKEVGLQMQ--FIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNN  101 (202)
Q Consensus        25 ~~~-~~~~~~~~~~~~~~~~~~~l~~L~l~~~--~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~  101 (202)
                      ++. ++.+.++.|........-.+....+.+.  .+..+|..+..+++|+.|++++|.++.++.+..+++|++|++++|.
T Consensus         2 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~   81 (198)
T 1ds9_A            2 AKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNL   81 (198)
T ss_dssp             CCCSCHHHHHHHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEE
T ss_pred             cchhHHHHHHHHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCC
Confidence            445 7788899998887666666788888766  3777888899999999999999999998888889999999999999


Q ss_pred             ccccCCcccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCc---
Q psy14661        102 IKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD---  178 (202)
Q Consensus       102 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~---  178 (202)
                      ++.++.....+++|+.|++++|.++++|.+..+++|+.|++++|.+++++.+..+..+++|+++++.+|++.+.++.   
T Consensus        82 l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~  161 (198)
T 1ds9_A           82 IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA  161 (198)
T ss_dssp             ECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTT
T ss_pred             cccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccc
Confidence            99888766666899999999999999887788899999999999999876656788999999999999999776543   


Q ss_pred             -hhhHHHHHHhCCCcccccCccCCC
Q psy14661        179 -PLYKSEVKKRLPNLKKLDGEVLPE  202 (202)
Q Consensus       179 -~~~~~~~~~~l~~L~~L~~~~~~~  202 (202)
                       ..++...+..+++|+.||+.+|++
T Consensus       162 ~~~~~~~~~~~l~~L~~Ld~~~i~~  186 (198)
T 1ds9_A          162 TSEYRIEVVKRLPNLKKLDGMPVDV  186 (198)
T ss_dssp             HHHHHHHHHHHCSSCSEECCGGGTT
T ss_pred             hHHHHHHHHHhCCCcEEECCcccCH
Confidence             456777889999999999999875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=2.7e-19  Score=134.33  Aligned_cols=161  Identities=21%  Similarity=0.256  Sum_probs=132.5

Q ss_pred             hcCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCC
Q psy14661         39 ENGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAET  114 (202)
Q Consensus        39 ~~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~  114 (202)
                      .+...+.+++.|++++|.+..+++ .+..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++. .+..+++
T Consensus        34 ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  113 (229)
T 3e6j_A           34 VPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH  113 (229)
T ss_dssp             CCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence            334556789999999999888754 589999999999999999988  457899999999999999998874 4455689


Q ss_pred             CcEEEcccccCCCCC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCc-hhhHHHHHHhCCCc
Q psy14661        115 LEELWVSYNYIEKTK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD-PLYKSEVKKRLPNL  192 (202)
Q Consensus       115 L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~~~~l~~L  192 (202)
                      |+.|++++|.++.+| .+..+++|+.|++++|.++.++. ..+..+++|+.+++.+|++.+.++. ..++.++....+.+
T Consensus       114 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~  192 (229)
T 3e6j_A          114 LKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIA  192 (229)
T ss_dssp             CCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred             hCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCcccc
Confidence            999999999999998 68889999999999999998764 5688899999999999999988742 23445555555566


Q ss_pred             ccccCccC
Q psy14661        193 KKLDGEVL  200 (202)
Q Consensus       193 ~~L~~~~~  200 (202)
                      ..+++.++
T Consensus       193 ~~~~g~~v  200 (229)
T 3e6j_A          193 MRWDGKAV  200 (229)
T ss_dssp             EEESSSEE
T ss_pred             ccccCccc
Confidence            66666544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=1.2e-18  Score=132.45  Aligned_cols=147  Identities=20%  Similarity=0.274  Sum_probs=85.1

Q ss_pred             CCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEE
Q psy14661         43 PISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEEL  118 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L  118 (202)
                      .+..++.|++++|.+..+++. +..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++ ..+..+++|+.|
T Consensus        33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  112 (251)
T 3m19_A           33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL  112 (251)
T ss_dssp             CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence            344566666666666555543 66666666666666666665  33566666666666666666554 233334566666


Q ss_pred             EcccccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        119 WVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       119 ~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      ++++|.++.++.  +..+++|+.|++++|.++.++. ..+..+++|++|++++|.++..++.      .+..+++|+.|+
T Consensus       113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~  185 (251)
T 3m19_A          113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHG------AFDRLGKLQTIT  185 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCEEE
T ss_pred             EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHH------HHhCCCCCCEEE
Confidence            666666665542  4556666666666666665432 3455566666666666666655432      344455555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.78  E-value=5.1e-18  Score=130.22  Aligned_cols=133  Identities=22%  Similarity=0.240  Sum_probs=64.7

Q ss_pred             CCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEE
Q psy14661         43 PISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEEL  118 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L  118 (202)
                      .+++|+.|++++|.+..++.. +..+++|+.|++++|.++.+  ..+..+++|++|++++|.++.++ ..+..+++|+.|
T Consensus        59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  138 (270)
T 2o6q_A           59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL  138 (270)
T ss_dssp             SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence            344455555555555444443 34455555555555555544  23444555555555555554443 122233455555


Q ss_pred             EcccccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661        119 WVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       119 ~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      ++++|.++.++.  +..+++|+.|++++|.++.++. ..+..+++|++|++++|.++..+
T Consensus       139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCC
Confidence            555555554441  4445555555555555554332 23444555555555555555444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.78  E-value=4.5e-18  Score=131.96  Aligned_cols=147  Identities=23%  Similarity=0.243  Sum_probs=93.1

Q ss_pred             CCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcc
Q psy14661         43 PISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS  121 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  121 (202)
                      .+.+++.|++++|.+..+++ .+..+++|+.|++++|.++.++....+++|++|++++|.++.++.....+++|+.|+++
T Consensus        29 ~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~  108 (290)
T 1p9a_G           29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (290)
T ss_dssp             CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC
Confidence            44567777777777666653 37777777777777777776644456666777777777766666544444666777777


Q ss_pred             cccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        122 YNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       122 ~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      +|.++.++  .|..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++..++.      .+..+++|++|+
T Consensus       109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~------~~~~l~~L~~L~  178 (290)
T 1p9a_G          109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTELPAG------LLNGLENLDTLL  178 (290)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCCCTT------TTTTCTTCCEEE
T ss_pred             CCcCcccCHHHHcCCCCCCEEECCCCCCCccCh-hhcccccCCCEEECCCCcCCccCHH------HhcCcCCCCEEE
Confidence            77666654  35666666667776666665432 3455566666666666666655532      344555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.77  E-value=8.4e-18  Score=128.99  Aligned_cols=150  Identities=21%  Similarity=0.252  Sum_probs=127.9

Q ss_pred             CCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCc
Q psy14661         41 GIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLE  116 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~  116 (202)
                      ...+.+++.|++++|.+..++. .+..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++ ..+..+++|+
T Consensus        33 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  112 (270)
T 2o6q_A           33 SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA  112 (270)
T ss_dssp             SCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred             CCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence            3456679999999999998886 499999999999999999988  45688999999999999999877 3445568999


Q ss_pred             EEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccc
Q psy14661        117 ELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKK  194 (202)
Q Consensus       117 ~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~  194 (202)
                      .|++++|.++.++  .+..+++|+.|++++|.+..++. ..+..+++|++|++++|.++..++.      .+..+++|++
T Consensus       113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~  185 (270)
T 2o6q_A          113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPEG------AFDKLTELKT  185 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCE
T ss_pred             EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEeChh------HhccCCCcCE
Confidence            9999999999887  37899999999999999998654 4578899999999999999988753      4567788887


Q ss_pred             ccC
Q psy14661        195 LDG  197 (202)
Q Consensus       195 L~~  197 (202)
                      |+-
T Consensus       186 L~L  188 (270)
T 2o6q_A          186 LKL  188 (270)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            763

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=9.9e-18  Score=125.01  Aligned_cols=136  Identities=18%  Similarity=0.258  Sum_probs=119.9

Q ss_pred             CCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCc
Q psy14661         41 GIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLE  116 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~  116 (202)
                      ...+.+++.|++++|.+..+++ .+..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++. .+..+++|+
T Consensus        28 ~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~  107 (220)
T 2v9t_B           28 TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQ  107 (220)
T ss_dssp             SSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCC
Confidence            3445689999999999999887 489999999999999999988  679999999999999999998884 445568999


Q ss_pred             EEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661        117 ELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD  177 (202)
Q Consensus       117 ~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  177 (202)
                      .|++++|.++.++  .+..+++|+.|++++|.++.++. ..+..+++|+++++.+|++.+.+.
T Consensus       108 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEECSGG
T ss_pred             EEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcCCCCc
Confidence            9999999999875  58899999999999999998754 568889999999999999988764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.77  E-value=1.8e-17  Score=125.85  Aligned_cols=143  Identities=17%  Similarity=0.235  Sum_probs=123.2

Q ss_pred             HhhhhhhcCCCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-c
Q psy14661         33 LKKWEEENGIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-L  108 (202)
Q Consensus        33 ~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~  108 (202)
                      +..+.+.....+++|+.|++++|.+..+++. +..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++. .
T Consensus        47 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  126 (251)
T 3m19_A           47 LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV  126 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhH
Confidence            4444444456778999999999998887765 89999999999999999988  567899999999999999998774 3


Q ss_pred             ccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661        109 EPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       109 ~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      +..+++|+.|++++|.++.++  .+..+++|+.|++++|.++.++. ..+..+++|+++++.+|++.+.+
T Consensus       127 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCTTS
T ss_pred             hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCceeCCc
Confidence            455689999999999999987  38899999999999999998654 56788999999999999998874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.76  E-value=1.1e-17  Score=128.42  Aligned_cols=146  Identities=23%  Similarity=0.240  Sum_probs=109.8

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCcEEE
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELW  119 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~  119 (202)
                      .+++++.|++++|.+..++ .+..+++|++|++++|.++.+  ..+..+++|++|++++|.++.++. .+..+++|+.|+
T Consensus        61 ~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  139 (272)
T 3rfs_A           61 YLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN  139 (272)
T ss_dssp             GCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence            4667888888888877765 477888888888888888877  346778888888888888877663 344457888888


Q ss_pred             cccccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        120 VSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       120 l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      +++|.++.++.  +..+++|+.|++++|.+++++. ..+..+++|++|++++|.++..++.      .+..+++|+.|+
T Consensus       140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~  211 (272)
T 3rfs_A          140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPDG------VFDRLTSLQYIW  211 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCEEE
T ss_pred             CCCCccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccCHH------HHhCCcCCCEEE
Confidence            88888887763  6778888888888888877543 4567788888888888888877643      456677777765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.75  E-value=3.3e-18  Score=144.74  Aligned_cols=143  Identities=20%  Similarity=0.217  Sum_probs=124.6

Q ss_pred             hhhhhcCCCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-Cccc
Q psy14661         35 KWEEENGIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEP  110 (202)
Q Consensus        35 ~~~~~~~~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~  110 (202)
                      +..+++...|.+++.|+|++|.+..+++. |..+++|++|++++|.|+.+  ..|..+++|++|++++|+++.++ ..+.
T Consensus        42 ~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~  121 (635)
T 4g8a_A           42 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS  121 (635)
T ss_dssp             CCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred             CcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence            34444455667899999999999999864 99999999999999999998  56999999999999999999887 4455


Q ss_pred             ccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661        111 LAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD  177 (202)
Q Consensus       111 ~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  177 (202)
                      .+++|++|++++|.++.++  .++.+++|+.|++++|.+..++.+..+..+++|++|++++|.++...+
T Consensus       122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence            5689999999999999987  489999999999999999876655678889999999999999988764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=6.9e-18  Score=129.17  Aligned_cols=140  Identities=26%  Similarity=0.373  Sum_probs=101.3

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY  122 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  122 (202)
                      .+.+++.|++++|.+..++ .+..+++|+.|++++|.+++++.+..+++|++|++++|.++.++....  ++|+.|++++
T Consensus        39 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~  115 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDN  115 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCS
T ss_pred             hcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc--CcccEEEccC
Confidence            3556788888888877777 477788888888888888877447777888888888888777665444  5777777877


Q ss_pred             ccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       123 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      |.+++++.+..+++|+.|++++|.+++++   .+..+++|+.|++++|.+++..        .+..+++|+.|+
T Consensus       116 N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~~--------~l~~l~~L~~L~  178 (263)
T 1xeu_A          116 NELRDTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTG--------GLTRLKKVNWID  178 (263)
T ss_dssp             SCCSBSGGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBCT--------TSTTCCCCCEEE
T ss_pred             CccCCChhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcchH--------HhccCCCCCEEe
Confidence            77777766777777777777777777653   4566777777777777776662        345566666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=1.2e-17  Score=129.58  Aligned_cols=141  Identities=27%  Similarity=0.340  Sum_probs=105.9

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY  122 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  122 (202)
                      .+++++.|++++|.+..+++ +..+++|+.|++++|.++.++.+..+++|++|++++|.++.++.+.. +++|+.|++++
T Consensus        66 ~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~-l~~L~~L~l~~  143 (291)
T 1h6t_A           66 YLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH-LPQLESLYLGN  143 (291)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGG-CTTCCEEECCS
T ss_pred             cCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcC-CCCCCEEEccC
Confidence            35678888888888777776 77788888888888888777667777888888888888777654333 47788888888


Q ss_pred             ccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       123 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      |.++.++.+..+++|+.|++++|.+++++.   +..+++|++|++++|.+++.+        .+..+++|+.|+
T Consensus       144 n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~--------~l~~l~~L~~L~  206 (291)
T 1h6t_A          144 NKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR--------ALAGLKNLDVLE  206 (291)
T ss_dssp             SCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG--------GGTTCTTCSEEE
T ss_pred             CcCCcchhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCCh--------hhccCCCCCEEE
Confidence            888777667777888888888888777543   677788888888888887764        346677777665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.75  E-value=2.2e-17  Score=127.50  Aligned_cols=148  Identities=18%  Similarity=0.191  Sum_probs=89.3

Q ss_pred             CCCCCceEEEccCcc-ccccc-hhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCc
Q psy14661         42 IPISEAKEVGLQMQF-IEKMD-SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLE  116 (202)
Q Consensus        42 ~~~~~l~~L~l~~~~-i~~l~-~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~  116 (202)
                      ..+++|+.|++++|. ++.++ ..+..+++|+.|++++|.++.+  ..+..+++|++|++++|.++.++. .+..+++|+
T Consensus        77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  156 (285)
T 1ozn_A           77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT  156 (285)
T ss_dssp             TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence            344555666666654 55553 3355566666666666666555  345556666666666666665542 233346666


Q ss_pred             EEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccc
Q psy14661        117 ELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKK  194 (202)
Q Consensus       117 ~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~  194 (202)
                      .|++++|.++.++  .+..+++|+.|++++|.++++. +..+..+++|+.|++++|.++..++.      .+..+++|+.
T Consensus       157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~  229 (285)
T 1ozn_A          157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSALPTE------ALAPLRALQY  229 (285)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCCHH------HHTTCTTCCE
T ss_pred             EEECCCCcccccCHHHhcCccccCEEECCCCcccccC-HhHccCcccccEeeCCCCcCCcCCHH------HcccCcccCE
Confidence            6666666666655  2566667777777777666542 24566677777777777777766522      4566777776


Q ss_pred             cc
Q psy14661        195 LD  196 (202)
Q Consensus       195 L~  196 (202)
                      |+
T Consensus       230 L~  231 (285)
T 1ozn_A          230 LR  231 (285)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.74  E-value=3.2e-17  Score=125.92  Aligned_cols=147  Identities=20%  Similarity=0.253  Sum_probs=127.9

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCC-cccccCCCcEEEcc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELWVS  121 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~  121 (202)
                      ++.+++.|++.+|.+..++. +..+++|+.|++++|.++.++.+..+++|++|++++|.++.++. .+..+++|+.|+++
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            45679999999999888776 88999999999999999998888899999999999999998774 34556899999999


Q ss_pred             cccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661        122 YNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG  197 (202)
Q Consensus       122 ~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~  197 (202)
                      +|.++.++.  +..+++|+.|++++|.+++++. ..+..+++|+.|++++|.++..++.      .+..+++|++|+-
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L  188 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEG------VFDKLTQLKDLRL  188 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEEC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCccCHH------HhcCCccCCEEEC
Confidence            999998873  7899999999999999998654 4578899999999999999988753      5678899998774

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.74  E-value=2.8e-17  Score=126.87  Aligned_cols=148  Identities=20%  Similarity=0.246  Sum_probs=88.6

Q ss_pred             CCCCCceEEEccCcccccc-chhhccCCCCCEEECCCCC-CcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCc
Q psy14661         42 IPISEAKEVGLQMQFIEKM-DSSLAVLTNCEKLSLSTNM-IEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLE  116 (202)
Q Consensus        42 ~~~~~l~~L~l~~~~i~~l-~~~l~~l~~L~~L~l~~n~-i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~  116 (202)
                      ..+++++.|++++|.+..+ +..+..+++|+.|++++|. ++.+  ..+..+++|++|++++|.++.++ .....+++|+
T Consensus        53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  132 (285)
T 1ozn_A           53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ  132 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence            3445566666666665555 2335566666666666664 5554  44556666666666666665543 3333346666


Q ss_pred             EEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccc
Q psy14661        117 ELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKK  194 (202)
Q Consensus       117 ~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~  194 (202)
                      .|++++|.++.++  .+..+++|+.|++++|.+++++. ..+..+++|++|++++|.++...+.      .+..+++|+.
T Consensus       133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~  205 (285)
T 1ozn_A          133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPH------AFRDLGRLMT  205 (285)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTT------TTTTCTTCCE
T ss_pred             EEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCcccccCHh------HccCcccccE
Confidence            6666666666655  25666677777777776665432 3456667777777777776665433      4556677766


Q ss_pred             cc
Q psy14661        195 LD  196 (202)
Q Consensus       195 L~  196 (202)
                      |+
T Consensus       206 L~  207 (285)
T 1ozn_A          206 LY  207 (285)
T ss_dssp             EE
T ss_pred             ee
Confidence            65

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=1.8e-16  Score=116.93  Aligned_cols=136  Identities=18%  Similarity=0.205  Sum_probs=118.0

Q ss_pred             CCCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCc
Q psy14661         41 GIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLE  116 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~  116 (202)
                      ...+.+++.|++++|.+..++.. +..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++. .+..+++|+
T Consensus        24 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  103 (208)
T 2o6s_A           24 TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK  103 (208)
T ss_dssp             SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence            34566899999999999888876 78999999999999999988  457889999999999999998774 345568999


Q ss_pred             EEEcccccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661        117 ELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD  177 (202)
Q Consensus       117 ~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  177 (202)
                      .|++++|.++.++.  +..+++|+.|++++|.+++++. ..+..+++|+++++.+|++.+..+
T Consensus       104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCCeecCCC
Confidence            99999999998873  7889999999999999998654 457889999999999999988764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.73  E-value=3.4e-17  Score=128.00  Aligned_cols=141  Identities=23%  Similarity=0.314  Sum_probs=87.3

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY  122 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  122 (202)
                      .+++++.|++++|.+..+++ +..+++|+.|++++|.++.++.+..+++|++|++++|.++.++.+ ..+++|+.|++++
T Consensus        61 ~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l-~~l~~L~~L~l~~  138 (308)
T 1h6u_A           61 YLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL-AGLSNLQVLYLDL  138 (308)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGG-TTCTTCCEEECCS
T ss_pred             ccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhh-cCCCCCCEEECCC
Confidence            35567777777777666666 666777777777777766665566666677777766666665542 2335666666666


Q ss_pred             ccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       123 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      |.++.++.+..+++|+.|++++|.+++++.   +..+++|+.|++++|.++...        .+..+++|++|+
T Consensus       139 n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~  201 (308)
T 1h6u_A          139 NQITNISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDIS--------PLASLPNLIEVH  201 (308)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG--------GGGGCTTCCEEE
T ss_pred             CccCcCccccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccCcCh--------hhcCCCCCCEEE
Confidence            666665555566666666666666665432   555666666666666665543        134455555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=6.5e-17  Score=120.55  Aligned_cols=136  Identities=18%  Similarity=0.171  Sum_probs=118.1

Q ss_pred             CCCCCCceEEEccCccccccch--hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCC
Q psy14661         41 GIPISEAKEVGLQMQFIEKMDS--SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETL  115 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~l~~--~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L  115 (202)
                      ...+..++.|++++|.+..+++  .+..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++ ..+..+++|
T Consensus        28 ~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  107 (220)
T 2v70_A           28 EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL  107 (220)
T ss_dssp             SCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred             cCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence            3345678999999999988854  388999999999999999998  47999999999999999999877 345556899


Q ss_pred             cEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661        116 EELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD  177 (202)
Q Consensus       116 ~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  177 (202)
                      +.|++++|.++.++  .+..+++|+.|++++|.++++. +..+..+++|+.+++++|++.+.++
T Consensus       108 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCcCCCc
Confidence            99999999999874  5889999999999999999863 3578899999999999999998864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=2.7e-17  Score=123.36  Aligned_cols=144  Identities=22%  Similarity=0.209  Sum_probs=124.5

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEE
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELW  119 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~  119 (202)
                      ..++.+.++.+++.++.+|..+.  ++|+.|++++|.++.+  ..|..+++|++|++++|.++.++ ..+..+++|+.|+
T Consensus        17 ~~Cs~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           17 CSCSGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             CEEETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CEEeCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence            45567889999999999998554  8999999999999998  66889999999999999999887 3445568999999


Q ss_pred             cccccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        120 VSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       120 l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      +++|.++.++.  +..+++|+.|++++|.++.++.  .+..+++|++|++++|.+...++.      .+..+++|+.|+
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~  165 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR--GIERLTHLTHLALDQNQLKSIPHG------AFDRLSSLTHAY  165 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT--TGGGCTTCSEEECCSSCCCCCCTT------TTTTCTTCCEEE
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCcccccCc--ccccCCCCCEEECCCCcCCccCHH------HHhCCCCCCEEE
Confidence            99999999873  7899999999999999998764  678899999999999999988753      567788898765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=5e-17  Score=121.20  Aligned_cols=141  Identities=18%  Similarity=0.183  Sum_probs=121.8

Q ss_pred             ceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEcccc
Q psy14661         47 AKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYN  123 (202)
Q Consensus        47 l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n  123 (202)
                      -+.++++++++..+|..+.  ++++.|++++|.++.+  ..|..+++|++|++++|.++.+. ..+..+++|+.|++++|
T Consensus        13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            3578999999999998654  7999999999999998  47899999999999999999764 55555689999999999


Q ss_pred             cCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        124 YIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       124 ~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      .++.+|.  |..+++|+.|++++|.++.++. ..+..+++|++|++++|.++...+.      .+..+++|+.|+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~  158 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKG------TFSPLRAIQTMH  158 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCEEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHH------HHhCCCCCCEEE
Confidence            9999883  7899999999999999998643 5788999999999999999998754      567788888765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.3e-17  Score=122.16  Aligned_cols=142  Identities=17%  Similarity=0.160  Sum_probs=122.2

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccc-cCCcccccCCCcEEEcc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS-FAGLEPLAETLEELWVS  121 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~L~~L~l~  121 (202)
                      .+++++.|++++|.+..+| .+..+++|+.|++++|.++.++.+..+++|++|++++|.++. .+.....+++|+.|+++
T Consensus        42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            3557999999999999988 599999999999999988888888899999999999999986 34445556899999999


Q ss_pred             cccCCC-CC-CCCCCCCccEEEccCCc-ccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        122 YNYIEK-TK-GIGVMRKLKVLYMSNNL-VKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       122 ~n~l~~-~~-~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      +|.+++ .+ .+..+++|+.|++++|. +.+++   .+..+++|++|++++|.+++..        .+..+++|++|+
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~--------~l~~l~~L~~L~  187 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR--------GIEDFPKLNQLY  187 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT--------TGGGCSSCCEEE
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH--------HhccCCCCCEEE
Confidence            999987 33 57889999999999998 87764   5788999999999999998875        457889999876

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.72  E-value=2e-17  Score=130.44  Aligned_cols=127  Identities=17%  Similarity=0.244  Sum_probs=69.5

Q ss_pred             CCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCcccc-ccCCccc---------cc
Q psy14661         44 ISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIK-SFAGLEP---------LA  112 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~---------~~  112 (202)
                      +++|+.|++++|.+..+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|++. .+|....         .+
T Consensus       103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            5567777777777777777777777777777777777755 45566666666666664332 3332211         13


Q ss_pred             CCCcEEEcccccCCCCC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcC
Q psy14661        113 ETLEELWVSYNYIEKTK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL  172 (202)
Q Consensus       113 ~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~  172 (202)
                      ++|+.|++++|.++.+| .++.+++|+.|++++|.+++++.  .+..+++|++|++++|.+
T Consensus       183 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~--~l~~l~~L~~L~Ls~n~~  241 (328)
T 4fcg_A          183 VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDLRGCTA  241 (328)
T ss_dssp             TTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG--GGGGCTTCCEEECTTCTT
T ss_pred             CCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch--hhccCCCCCEEECcCCcc
Confidence            45555555555555444 24444444444444444444322  233344444444444333

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=2.1e-16  Score=122.60  Aligned_cols=132  Identities=20%  Similarity=0.243  Sum_probs=97.9

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEE
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELW  119 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~  119 (202)
                      .+++++.|++++|.+..+|..+..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++ ..+..+++|+.|+
T Consensus        75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (290)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence            45667777777777777777677777888888888888776  45777788888888888877766 3344457788888


Q ss_pred             cccccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661        120 VSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       120 l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      +++|.++.+|.  +..+++|+.|++++|.++.++.  .+....+|+.+++.+|++.+.+
T Consensus       155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~--~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--GFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCCCSEEECCSCCBCCSG
T ss_pred             CCCCcCCccCHHHhcCcCCCCEEECCCCcCCccCh--hhcccccCCeEEeCCCCccCcC
Confidence            88888887762  5677888888888888877654  5666677888888888887765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.72  E-value=6.3e-17  Score=126.50  Aligned_cols=143  Identities=21%  Similarity=0.282  Sum_probs=119.0

Q ss_pred             CCCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEc
Q psy14661         41 GIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWV  120 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l  120 (202)
                      ...+++|+.|++++|.+..++. +..+++|+.|++++|.++.++.+..+++|++|++++|.++.++.+. .+++|+.|++
T Consensus        81 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~-~l~~L~~L~l  158 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLA-GLTNLQYLSI  158 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSCCGG-GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGG-GCTTCCEEEC
T ss_pred             HccCCCCCEEEccCCcCCCchh-hcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcccc-CCCCccEEEc
Confidence            3467789999999999888764 8889999999999999998866888999999999999998876633 4478999999


Q ss_pred             ccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        121 SYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       121 ~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      ++|.+++++.+..+++|+.|++++|.+++++.   +..+++|++|++++|.+++..        .+..+++|+.|+
T Consensus       159 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~--------~l~~l~~L~~L~  223 (308)
T 1h6u_A          159 GNAQVSDLTPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS--------PLANTSNLFIVT  223 (308)
T ss_dssp             CSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCG--------GGTTCTTCCEEE
T ss_pred             cCCcCCCChhhcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCccc--------cccCCCCCCEEE
Confidence            99999888778888899999999998887653   677888999999999888775        246678887765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.72  E-value=3.8e-17  Score=125.55  Aligned_cols=137  Identities=22%  Similarity=0.238  Sum_probs=117.6

Q ss_pred             CCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCc
Q psy14661         41 GIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLE  116 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~  116 (202)
                      ...+.+++.|++++|.+..++. .+..+++|+.|++++|.++.+  ..+..+++|++|++++|.++.++ ..+..+++|+
T Consensus        24 ~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (276)
T 2z62_A           24 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  103 (276)
T ss_dssp             SSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence            3345679999999999988887 589999999999999999987  46889999999999999998766 4455568999


Q ss_pred             EEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661        117 ELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD  177 (202)
Q Consensus       117 ~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  177 (202)
                      .|++++|.++.++  .+..+++|+.|++++|.+.+++.+..+..+++|++|++++|.++...+
T Consensus       104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A          104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            9999999999876  478899999999999999875444578889999999999999988763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.72  E-value=1.7e-17  Score=130.77  Aligned_cols=146  Identities=15%  Similarity=0.188  Sum_probs=114.9

Q ss_pred             CCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661         44 ISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY  122 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  122 (202)
                      ..+++.|++++|.+..+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++.+|.....+++|+.|++++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence            4678889999988888888888888999999999988876 668888889999999998888776566668899999988


Q ss_pred             ccCC-CCC-CCC---------CCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCC
Q psy14661        123 NYIE-KTK-GIG---------VMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPN  191 (202)
Q Consensus       123 n~l~-~~~-~~~---------~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~  191 (202)
                      |.+. .+| .+.         .+++|+.|++++|.++.++.  .++.+++|++|++++|.++..++       .+..+++
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~N~l~~l~~-------~l~~l~~  230 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA--SIANLQNLKSLKIRNSPLSALGP-------AIHHLPK  230 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG--GGGGCTTCCEEEEESSCCCCCCG-------GGGGCTT
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH--hhcCCCCCCEEEccCCCCCcCch-------hhccCCC
Confidence            6654 455 233         38889999999988886654  67888889999999998887652       3567788


Q ss_pred             cccccCc
Q psy14661        192 LKKLDGE  198 (202)
Q Consensus       192 L~~L~~~  198 (202)
                      |++|+-+
T Consensus       231 L~~L~Ls  237 (328)
T 4fcg_A          231 LEELDLR  237 (328)
T ss_dssp             CCEEECT
T ss_pred             CCEEECc
Confidence            8777643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.72  E-value=5.5e-17  Score=132.60  Aligned_cols=110  Identities=22%  Similarity=0.197  Sum_probs=61.4

Q ss_pred             cCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC---------
Q psy14661         40 NGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG---------  107 (202)
Q Consensus        40 ~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~---------  107 (202)
                      ....+++|+.|++++|.+..++. .+..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++.         
T Consensus        83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  162 (440)
T 3zyj_A           83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL  162 (440)
T ss_dssp             TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence            34456667777777776666553 366666666777666666665  345566666666666665554331         


Q ss_pred             -----------------cccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccC
Q psy14661        108 -----------------LEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKE  149 (202)
Q Consensus       108 -----------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~  149 (202)
                                       .+..+++|+.|++++|.++.+|.+..+++|+.|++++|.+++
T Consensus       163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE
T ss_pred             CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc
Confidence                             112234455555555555555444445555555555555444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.72  E-value=2.7e-17  Score=117.40  Aligned_cols=136  Identities=24%  Similarity=0.140  Sum_probs=109.4

Q ss_pred             CCCCCCceEEEccCcccc--ccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccc-cCCcccccCCCcE
Q psy14661         41 GIPISEAKEVGLQMQFIE--KMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS-FAGLEPLAETLEE  117 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~--~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~L~~  117 (202)
                      ...+++++.|++++|.+.  .+|..+..+++|+.|++++|.++.+..+..+++|++|++++|.++. ++.....+++|+.
T Consensus        20 ~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            445678999999999987  8888788899999999999998888778888899999999998887 5555554578889


Q ss_pred             EEcccccCCCCC---CCCCCCCccEEEccCCcccCccc--cccCCCCCcceEEEecCCcCCCCC
Q psy14661        118 LWVSYNYIEKTK---GIGVMRKLKVLYMSNNLVKEWAE--FVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       118 L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      |++++|.++.++   .+..+++|+.|++++|.+++++.  ...+..+++|+++++.+|.+...+
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            999988888864   46778888888888888887543  135677888888888888877665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=2.6e-17  Score=125.99  Aligned_cols=151  Identities=23%  Similarity=0.255  Sum_probs=125.0

Q ss_pred             CCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcc
Q psy14661         42 IPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS  121 (202)
Q Consensus        42 ~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  121 (202)
                      ..+++|+.|++++|.+..+++ +..+++|+.|++++|.++.++.+.. ++|++|++++|.++.++.+. .+++|+.|+++
T Consensus        60 ~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~-~l~~L~~L~Ls  136 (263)
T 1xeu_A           60 QFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDSLI-HLKNLEILSIR  136 (263)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGGGT-TCTTCCEEECT
T ss_pred             hhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChhhc-CcccccEEECC
Confidence            357789999999999999988 9999999999999999999855555 89999999999999877544 44899999999


Q ss_pred             cccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccCccCC
Q psy14661        122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVLP  201 (202)
Q Consensus       122 ~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~  201 (202)
                      +|.+++++.+..+++|+.|++++|.++++   ..+..+++|+.+++++|+++..+.  .+.. .+...+.++.+|+..++
T Consensus       137 ~N~i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~~~~--~~~~-~l~~~~~l~~l~~~~i~  210 (263)
T 1xeu_A          137 NNKLKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNEPV--KYQP-ELYITNTVKDPDGRWIS  210 (263)
T ss_dssp             TSCCCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEECCCE--ECCS-EEEEECCCBCTTSCBCC
T ss_pred             CCcCCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccCCcc--cccc-ceEECCeeecCCCCCcC
Confidence            99999998888999999999999999986   468899999999999999987752  1111 11224566777766553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.71  E-value=8.3e-17  Score=131.95  Aligned_cols=137  Identities=20%  Similarity=0.127  Sum_probs=78.2

Q ss_pred             hhcCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-c-----
Q psy14661         38 EENGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-L-----  108 (202)
Q Consensus        38 ~~~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~-----  108 (202)
                      +.....+++|+.|++++|.+..+++ .+..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++. .     
T Consensus        92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  171 (452)
T 3zyi_A           92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP  171 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred             HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC
Confidence            3344556677777777777666653 366777777777777777766  346666677777777666654431 1     


Q ss_pred             --------------------ccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEec
Q psy14661        109 --------------------EPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFC  168 (202)
Q Consensus       109 --------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~  168 (202)
                                          +..+++|+.|++++|.++.+|.+..+++|+.|++++|.++++.. ..+..+++|+.|++.
T Consensus       172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~  250 (452)
T 3zyi_A          172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVM  250 (452)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECG-GGGTTCTTCCEEECT
T ss_pred             cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCc-ccccCccCCCEEEeC
Confidence                                22234555566666665555555555556666666655554321 234444444444444


Q ss_pred             CCcCCCC
Q psy14661        169 GNPLVEG  175 (202)
Q Consensus       169 ~n~~~~~  175 (202)
                      +|.+...
T Consensus       251 ~n~l~~~  257 (452)
T 3zyi_A          251 NSQVSLI  257 (452)
T ss_dssp             TSCCCEE
T ss_pred             CCcCceE
Confidence            4444433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=1.1e-16  Score=135.56  Aligned_cols=142  Identities=27%  Similarity=0.325  Sum_probs=118.8

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY  122 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  122 (202)
                      .+++|+.|+|++|.+..+++ +..+++|+.|++++|.++.++.+..+++|++|++++|.++.++.+.. +++|+.|++++
T Consensus        63 ~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~-l~~L~~L~Ls~  140 (605)
T 1m9s_A           63 YLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVH-LPQLESLYLGN  140 (605)
T ss_dssp             GCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGGGG-CTTCSEEECCS
T ss_pred             cCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCccccC-CCccCEEECCC
Confidence            46779999999999888887 88899999999999999888888889999999999999888765444 48899999999


Q ss_pred             ccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661        123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG  197 (202)
Q Consensus       123 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~  197 (202)
                      |.++.++.+..+++|+.|++++|.+.++..   +..+++|+.|++++|.+++.+        .+..+++|+.|+-
T Consensus       141 N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~--------~l~~l~~L~~L~L  204 (605)
T 1m9s_A          141 NKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR--------ALAGLKNLDVLEL  204 (605)
T ss_dssp             SCCCCCGGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG--------GGTTCTTCSEEEC
T ss_pred             CccCCchhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCCh--------HHccCCCCCEEEc
Confidence            999888778888999999999998887543   778889999999999888764        4577888887663

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=1.3e-16  Score=127.35  Aligned_cols=145  Identities=23%  Similarity=0.251  Sum_probs=118.8

Q ss_pred             cCCCCCCceEEEccCccccccchh-hc-cCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCC
Q psy14661         40 NGIPISEAKEVGLQMQFIEKMDSS-LA-VLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAET  114 (202)
Q Consensus        40 ~~~~~~~l~~L~l~~~~i~~l~~~-l~-~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~  114 (202)
                      +...+..++.|+|++|.+..++.. +. .+++|+.|++++|.|+.+  ..|..+++|++|++++|.++.++. .+..+++
T Consensus        34 P~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  113 (361)
T 2xot_A           34 PQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA  113 (361)
T ss_dssp             CSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC
Confidence            334556789999999999988876 65 899999999999999988  568999999999999999988763 4555689


Q ss_pred             CcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccC---CCCCcceEEEecCCcCCCCCCchhhHHHHHHhC
Q psy14661        115 LEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKL---GECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRL  189 (202)
Q Consensus       115 L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l  189 (202)
                      |+.|++++|.++.++  .|..+++|+.|++++|.++.++. ..+   ..+++|+.|++++|.++..++.      .+..+
T Consensus       114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~------~~~~l  186 (361)
T 2xot_A          114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLPLT------DLQKL  186 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCCHH------HHHHS
T ss_pred             CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccCHH------Hhhhc
Confidence            999999999999874  58899999999999999998764 333   5689999999999999987632      45556


Q ss_pred             CC
Q psy14661        190 PN  191 (202)
Q Consensus       190 ~~  191 (202)
                      +.
T Consensus       187 ~~  188 (361)
T 2xot_A          187 PA  188 (361)
T ss_dssp             CH
T ss_pred             cH
Confidence            65

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.70  E-value=1.7e-16  Score=130.80  Aligned_cols=151  Identities=20%  Similarity=0.153  Sum_probs=120.1

Q ss_pred             hcCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCC
Q psy14661         39 ENGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAET  114 (202)
Q Consensus        39 ~~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~  114 (202)
                      .+...+..++.|++++|.+..+++ .+..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++. .+..+++
T Consensus        26 ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  105 (477)
T 2id5_A           26 VPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN  105 (477)
T ss_dssp             CCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred             CCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence            334456778999999999888764 488899999999999999887  678889999999999999888773 4455688


Q ss_pred             CcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCc
Q psy14661        115 LEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNL  192 (202)
Q Consensus       115 L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L  192 (202)
                      |+.|++++|.++.++  .+..+++|+.|++++|.+..+.. ..+..+++|+.|++.+|.++..++.      .+..+++|
T Consensus       106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~------~l~~l~~L  178 (477)
T 2id5_A          106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTE------ALSHLHGL  178 (477)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHH------HHTTCTTC
T ss_pred             CCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccChh------HhcccCCC
Confidence            999999999988764  47888899999999998877543 5678888899999998888877632      56667777


Q ss_pred             cccc
Q psy14661        193 KKLD  196 (202)
Q Consensus       193 ~~L~  196 (202)
                      +.|+
T Consensus       179 ~~L~  182 (477)
T 2id5_A          179 IVLR  182 (477)
T ss_dssp             CEEE
T ss_pred             cEEe
Confidence            7665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.70  E-value=1.4e-16  Score=130.16  Aligned_cols=149  Identities=22%  Similarity=0.299  Sum_probs=97.5

Q ss_pred             cCCCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc---------------------------cCCCCCCC
Q psy14661         40 NGIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI---------------------------NGLSGLKK   91 (202)
Q Consensus        40 ~~~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~---------------------------~~~~~l~~   91 (202)
                      ....+++|+.|++++|.+..++.. +..+++|+.|++++|.++.+                           ..|..+++
T Consensus       107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~  186 (440)
T 3zyj_A          107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN  186 (440)
T ss_dssp             GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred             hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence            334455556666665555555543 55555555555555544332                           23566777


Q ss_pred             CcEEEccCccccccCCcccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecC
Q psy14661         92 LKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG  169 (202)
Q Consensus        92 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~  169 (202)
                      |++|++++|.++.++.+... ++|+.|++++|.++.++  .+..+++|+.|++++|.++.++. ..+..+++|+.|++++
T Consensus       187 L~~L~L~~n~l~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~  264 (440)
T 3zyj_A          187 LRYLNLAMCNLREIPNLTPL-IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAH  264 (440)
T ss_dssp             CCEEECTTSCCSSCCCCTTC-SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTT
T ss_pred             cCeecCCCCcCccccccCCC-cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCC
Confidence            88888888888777754443 78888888888887763  47777888888888887777543 5667777788888888


Q ss_pred             CcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        170 NPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       170 n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      |.++..++.      .+..+++|+.|+
T Consensus       265 N~l~~~~~~------~~~~l~~L~~L~  285 (440)
T 3zyj_A          265 NNLTLLPHD------LFTPLHHLERIH  285 (440)
T ss_dssp             SCCCCCCTT------TTSSCTTCCEEE
T ss_pred             CCCCccChh------HhccccCCCEEE
Confidence            877776643      455666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.70  E-value=6.3e-17  Score=128.57  Aligned_cols=135  Identities=19%  Similarity=0.138  Sum_probs=101.3

Q ss_pred             CCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCc
Q psy14661         41 GIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLE  116 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~  116 (202)
                      ...+.+++.|++++|.+..++. .+..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++. .+..+++|+
T Consensus        48 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  127 (353)
T 2z80_A           48 SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT  127 (353)
T ss_dssp             TTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred             ccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence            3345578899999998888877 488888999999998888887  458888888888888888887763 244457888


Q ss_pred             EEEcccccCCCCCC---CCCCCCccEEEccCCc-ccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661        117 ELWVSYNYIEKTKG---IGVMRKLKVLYMSNNL-VKEWAEFVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       117 ~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      .|++++|.++.++.   +..+++|+.|++++|. +..++ ...+..+++|+++++++|.+....
T Consensus       128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~  190 (353)
T 2z80_A          128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYE  190 (353)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEEC
T ss_pred             EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCccC
Confidence            88888888887764   6778888888888873 55542 245666777777777777666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=1.3e-16  Score=123.73  Aligned_cols=141  Identities=24%  Similarity=0.308  Sum_probs=124.7

Q ss_pred             CCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccc
Q psy14661         44 ISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYN  123 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  123 (202)
                      +.+++.|++++|.+..++. +..+++|+.|++++|.++.+..+..+++|++|++++|.++.++.+.. +++|+.|++++|
T Consensus        45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~-l~~L~~L~L~~n  122 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKD-LKKLKSLSLEHN  122 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTT-CTTCCEEECTTS
T ss_pred             cCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhcc-CCCCCEEECCCC
Confidence            5569999999999998876 88999999999999999999559999999999999999998776444 489999999999


Q ss_pred             cCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661        124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG  197 (202)
Q Consensus       124 ~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~  197 (202)
                      .++.++.+..+++|+.|++++|.+++++   .+..+++|++|++++|.++...        .+..+++|++|+-
T Consensus       123 ~i~~~~~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~--------~l~~l~~L~~L~L  185 (291)
T 1h6t_A          123 GISDINGLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIV--------PLAGLTKLQNLYL  185 (291)
T ss_dssp             CCCCCGGGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCG--------GGTTCTTCCEEEC
T ss_pred             cCCCChhhcCCCCCCEEEccCCcCCcch---hhccCCCCCEEEccCCccccch--------hhcCCCccCEEEC
Confidence            9999888889999999999999999863   5788999999999999998875        2577899988763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=1.7e-16  Score=118.23  Aligned_cols=141  Identities=17%  Similarity=0.182  Sum_probs=120.6

Q ss_pred             ceEEEccCccccccchhhccCCCCCEEECCCCCCcCc---cCCCCCCCCcEEEccCccccccCC-cccccCCCcEEEccc
Q psy14661         47 AKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELWVSY  122 (202)
Q Consensus        47 l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~---~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~  122 (202)
                      -+.+++++|.++.+|..+  ...++.|++++|.++.+   ..|..+++|++|++++|.++.++. .+..+++|+.|++++
T Consensus        13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            458999999999998855  34678999999999987   337899999999999999998773 555568999999999


Q ss_pred             ccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        123 NYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       123 n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      |.++.++  .+..+++|+.|++++|.++.+.. ..+..+++|++|++++|.++...+.      .+..+++|+.|+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~  159 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPG------AFDTLHSLSTLN  159 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTT------TTTTCTTCCEEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHH------HhcCCCCCCEEE
Confidence            9999987  38899999999999999998643 5788999999999999999998754      567788888776

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.69  E-value=1.7e-16  Score=123.57  Aligned_cols=130  Identities=18%  Similarity=0.180  Sum_probs=56.9

Q ss_pred             CCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc---cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEc
Q psy14661         45 SEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWV  120 (202)
Q Consensus        45 ~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~---~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l  120 (202)
                      ++++.|++++|.+..+|..+..+++|+.|++++|.++.+   ..+..+++|++|++++|.++... .....+++|+.|++
T Consensus        78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  157 (306)
T 2z66_A           78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  157 (306)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred             cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence            344444444444444444444455555555555544443   13444444555555444443222 22222244444444


Q ss_pred             ccccCCC--CC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCC
Q psy14661        121 SYNYIEK--TK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEG  175 (202)
Q Consensus       121 ~~n~l~~--~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~  175 (202)
                      ++|.+++  +| .+..+++|+.|++++|.+++++ +..+..+++|+.|++++|.++..
T Consensus       158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~  214 (306)
T 2z66_A          158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSL  214 (306)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBC
T ss_pred             CCCccccccchhHHhhCcCCCEEECCCCCcCCcC-HHHhcCCCCCCEEECCCCccCcc
Confidence            4444433  22 2344444444444444444331 12334444444444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.69  E-value=1e-16  Score=115.34  Aligned_cols=131  Identities=22%  Similarity=0.285  Sum_probs=73.7

Q ss_pred             CCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCC-cccccCCCcEEEc
Q psy14661         42 IPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELWV  120 (202)
Q Consensus        42 ~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l  120 (202)
                      .++.+++.|++++|.+..++......++|+.|++++|.++.+..+..+++|++|++++|.++.++. .+..+++|+.|++
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            346667777777777666654233333777777777776666666666666666666666665552 2233455666666


Q ss_pred             ccccCCCCCC---CCCCCCccEEEccCCcccCcccc--ccCCCCCcceEEEecCCcC
Q psy14661        121 SYNYIEKTKG---IGVMRKLKVLYMSNNLVKEWAEF--VKLGECPSLIDLVFCGNPL  172 (202)
Q Consensus       121 ~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~l~l~~n~~  172 (202)
                      ++|.++.+|.   +..+++|+.|++++|.+..++..  ..+..+++|+.++++.|..
T Consensus        96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            6666555442   44455555555555555443320  0234455555555555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.68  E-value=7.3e-16  Score=113.63  Aligned_cols=142  Identities=21%  Similarity=0.204  Sum_probs=119.4

Q ss_pred             ceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCcEEEcccc
Q psy14661         47 AKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELWVSYN  123 (202)
Q Consensus        47 l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n  123 (202)
                      -+.++.+++++..+|..+  .++++.|++++|.++.+  ..+..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            356788888888888654  46999999999999988  457899999999999999998774 4455689999999999


Q ss_pred             cCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661        124 YIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG  197 (202)
Q Consensus       124 ~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~  197 (202)
                      .++.++.  +..+++|+.|++++|.++.++. ..+..+++|++|++++|.++..++.      .+..+++|++|+-
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~------~~~~l~~L~~L~l  155 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPDG------VFDRLTSLQYIWL  155 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCEEEC
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCccceeCHH------HhccCCCccEEEe
Confidence            9998873  7899999999999999998654 4578899999999999999987743      5677888887763

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.68  E-value=2.9e-16  Score=122.24  Aligned_cols=133  Identities=20%  Similarity=0.204  Sum_probs=70.8

Q ss_pred             CCCCceEEEccCccccccch--hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccc--cCCcccccCCCc
Q psy14661         43 PISEAKEVGLQMQFIEKMDS--SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS--FAGLEPLAETLE  116 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~--~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~L~  116 (202)
                      .+++|+.|++++|.+..++.  .+..+++|+.|++++|.++..  ..+..+++|++|++++|.++.  .+.....+++|+
T Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  178 (306)
T 2z66_A           99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  178 (306)
T ss_dssp             TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence            35556666666666555553  355566666666666665544  345555556666666555543  333333345555


Q ss_pred             EEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661        117 ELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       117 ~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      .|++++|.++.++  .+..+++|+.|++++|.+++++. ..+..+++|++|++++|.+....
T Consensus       179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~  239 (306)
T 2z66_A          179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSK  239 (306)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCBCS
T ss_pred             EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcccC
Confidence            5555555555442  34455555555555555554332 23444555555555555554443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.68  E-value=3e-16  Score=124.14  Aligned_cols=123  Identities=21%  Similarity=0.298  Sum_probs=66.2

Q ss_pred             hccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccCCCCCCCCCCCCccEEEcc
Q psy14661         64 LAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMS  143 (202)
Q Consensus        64 l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~  143 (202)
                      +..+++|+.|++++|.++....+..+++|++|++++|.++.++.+. .+++|+.|++++|.+++++.+..+++|+.|+++
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVK-DLTKLKMLNVGSNQISDISVLNNLSQLNSLFLN  295 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHh-cCCCcCEEEccCCccCCChhhcCCCCCCEEECc
Confidence            4444555555555555555433555555555555555555443222 225566666666655555555555566666666


Q ss_pred             CCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        144 NNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       144 ~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      +|.+.+.. +..+..+++|+++++++|++++..        .+..+++|+.|+
T Consensus       296 ~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~--------~~~~l~~L~~L~  339 (347)
T 4fmz_A          296 NNQLGNED-MEVIGGLTNLTTLFLSQNHITDIR--------PLASLSKMDSAD  339 (347)
T ss_dssp             SSCCCGGG-HHHHHTCTTCSEEECCSSSCCCCG--------GGGGCTTCSEES
T ss_pred             CCcCCCcC-hhHhhccccCCEEEccCCcccccc--------Chhhhhccceee
Confidence            66555432 234555666666666666665554        134566666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.68  E-value=4.3e-16  Score=127.69  Aligned_cols=148  Identities=26%  Similarity=0.282  Sum_probs=107.2

Q ss_pred             cCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCC
Q psy14661         40 NGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETL  115 (202)
Q Consensus        40 ~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L  115 (202)
                      +...+++++.|++++|.+..+++ .+..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++ ..+..+++|
T Consensus        70 P~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  149 (452)
T 3zyi_A           70 PQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL  149 (452)
T ss_dssp             CSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred             CCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence            34456789999999999888865 499999999999999999988  67899999999999999999877 345556899


Q ss_pred             cEEEcccccCCCCC--CCCCCCCccEEEccC-------------------------CcccCccccccCCCCCcceEEEec
Q psy14661        116 EELWVSYNYIEKTK--GIGVMRKLKVLYMSN-------------------------NLVKEWAEFVKLGECPSLIDLVFC  168 (202)
Q Consensus       116 ~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~-------------------------n~l~~~~~~~~~~~l~~L~~l~l~  168 (202)
                      +.|++++|.++.++  .+..+++|+.|++++                         |.+++++   .+..+++|+.|+++
T Consensus       150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~Ls  226 (452)
T 3zyi_A          150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP---NLTPLVGLEELEMS  226 (452)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC---CCTTCTTCCEEECT
T ss_pred             CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc---cccccccccEEECc
Confidence            99999999988765  255555555555554                         4444332   24445555555555


Q ss_pred             CCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        169 GNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       169 ~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      +|.+....+.      .+..+++|+.|+
T Consensus       227 ~N~l~~~~~~------~~~~l~~L~~L~  248 (452)
T 3zyi_A          227 GNHFPEIRPG------SFHGLSSLKKLW  248 (452)
T ss_dssp             TSCCSEECGG------GGTTCTTCCEEE
T ss_pred             CCcCcccCcc------cccCccCCCEEE
Confidence            5555555432      345566666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.68  E-value=1.1e-16  Score=120.63  Aligned_cols=144  Identities=16%  Similarity=0.189  Sum_probs=66.9

Q ss_pred             CCCceEEEccCcc-ccccch-hhccCCCCCEEECCC-CCCcCc--cCCCCCCCCcEEEccCccccccCCcccccCCCc--
Q psy14661         44 ISEAKEVGLQMQF-IEKMDS-SLAVLTNCEKLSLST-NMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLE--  116 (202)
Q Consensus        44 ~~~l~~L~l~~~~-i~~l~~-~l~~l~~L~~L~l~~-n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~--  116 (202)
                      +++++.|++++|. ++.+++ .+..+++|+.|++++ |.++.+  ..|..+++|++|++++|.++.++. ...+++|+  
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L  132 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIF  132 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSE
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccc
Confidence            4444444444443 444443 244444444444444 444444  233444444444444444444443 12223343  


Q ss_pred             -EEEcccc-cCCCCC--CCCCCCCcc-EEEccCCcccCccccccCCCCCcceEEEecCCc-CCCCCCchhhHHHHHHhC-
Q psy14661        117 -ELWVSYN-YIEKTK--GIGVMRKLK-VLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP-LVEGMDDPLYKSEVKKRL-  189 (202)
Q Consensus       117 -~L~l~~n-~l~~~~--~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~l-  189 (202)
                       .|++++| .++.++  .+..+++|+ .+++++|.++.++. ..+.. ++|+.+++++|+ ++..++.      .+..+ 
T Consensus       133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L~~L~L~~n~~l~~i~~~------~~~~l~  204 (239)
T 2xwt_C          133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKLDAVYLNKNKYLTVIDKD------AFGGVY  204 (239)
T ss_dssp             EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEEEEEECTTCTTCCEECTT------TTTTCS
T ss_pred             cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH-hhcCC-CCCCEEEcCCCCCcccCCHH------Hhhccc
Confidence             5555555 444443  245555555 55555555554432 12222 556666666663 5544422      34445 


Q ss_pred             CCccccc
Q psy14661        190 PNLKKLD  196 (202)
Q Consensus       190 ~~L~~L~  196 (202)
                      ++|+.|+
T Consensus       205 ~~L~~L~  211 (239)
T 2xwt_C          205 SGPSLLD  211 (239)
T ss_dssp             BCCSEEE
T ss_pred             cCCcEEE
Confidence            5565554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=9.6e-16  Score=112.00  Aligned_cols=128  Identities=20%  Similarity=0.240  Sum_probs=108.4

Q ss_pred             eEEEccCccccccchhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEcccccC
Q psy14661         48 KEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYNYI  125 (202)
Q Consensus        48 ~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l  125 (202)
                      +.++++++.+..+|..+  .++++.|++++|.++.+ ..|..+++|++|++++|.++.++ ..+..+++|+.|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            56889999998888754  36899999999999988 78888999999999999998877 3455568999999999999


Q ss_pred             CCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCc
Q psy14661        126 EKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD  178 (202)
Q Consensus       126 ~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  178 (202)
                      +.++  .|..+++|+.|++++|.++.++. ..+..+++|+.+++.+|++.+.+..
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecCCcC
Confidence            9876  48889999999999999988654 4678899999999999999887643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.67  E-value=1e-16  Score=120.71  Aligned_cols=133  Identities=11%  Similarity=0.122  Sum_probs=91.2

Q ss_pred             CCCCceEEEccCccccccch-hhccCCCCCEEECCCCC-CcCc--cCCCCCCCCcEEEccC-ccccccC-CcccccCCCc
Q psy14661         43 PISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNM-IEKI--NGLSGLKKLKVLSLAR-NNIKSFA-GLEPLAETLE  116 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~-i~~~--~~~~~l~~L~~L~l~~-n~l~~~~-~~~~~~~~L~  116 (202)
                      .+.+++.|++++|.+..+++ .+..+++|+.|++++|. ++.+  ..|..+++|++|++++ |.++.++ ..+..+++|+
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            34467777777777777766 36777777777777775 7666  3566777777777776 7777665 3344456777


Q ss_pred             EEEcccccCCCCCCCCCCCCcc---EEEccCC-cccCccccccCCCCCcce-EEEecCCcCCCCC
Q psy14661        117 ELWVSYNYIEKTKGIGVMRKLK---VLYMSNN-LVKEWAEFVKLGECPSLI-DLVFCGNPLVEGM  176 (202)
Q Consensus       117 ~L~l~~n~l~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~~l~~L~-~l~l~~n~~~~~~  176 (202)
                      .|++++|.++.+|.+..+++|+   .|++++| .++.++. ..+..+++|+ ++++++|.++..+
T Consensus       109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i~  172 (239)
T 2xwt_C          109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSVQ  172 (239)
T ss_dssp             EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEEC
T ss_pred             EEeCCCCCCccccccccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcccC
Confidence            7777777777777666666666   7777777 6766543 3466677777 7777777776554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=9.3e-16  Score=111.92  Aligned_cols=129  Identities=19%  Similarity=0.184  Sum_probs=110.4

Q ss_pred             ceEEEccCccccccchhhccCCCCCEEECCCCCCcCc-c--CCCCCCCCcEEEccCccccccC-CcccccCCCcEEEccc
Q psy14661         47 AKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-N--GLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSY  122 (202)
Q Consensus        47 l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~-~--~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~  122 (202)
                      .+.+++++++++.+|..+.  .+++.|++++|.++.+ .  .+..+++|++|++++|.++.+. ..+..+++|+.|++++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            4679999999999998654  3999999999999988 3  3889999999999999999874 5555568999999999


Q ss_pred             ccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCc
Q psy14661        123 NYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD  178 (202)
Q Consensus       123 n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  178 (202)
                      |.++.++  .+..+++|+.|++++|.++++. +..+..+++|+++++++|++.+.++.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            9999876  3888999999999999998853 35788899999999999999988643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.67  E-value=3.1e-16  Score=132.65  Aligned_cols=139  Identities=23%  Similarity=0.228  Sum_probs=120.7

Q ss_pred             hcCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCcccccc-CCcccccCC
Q psy14661         39 ENGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSF-AGLEPLAET  114 (202)
Q Consensus        39 ~~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~  114 (202)
                      .+...+.+++.|++++|.+..+++ .+..+++|++|++++|.++.+  ..|..+++|++|++++|.++.+ +..+..+++
T Consensus        26 ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  105 (606)
T 3vq2_A           26 VPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS  105 (606)
T ss_dssp             CCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred             CCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence            334456789999999999988887 599999999999999999988  5689999999999999999887 456666789


Q ss_pred             CcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661        115 LEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD  177 (202)
Q Consensus       115 L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  177 (202)
                      |++|++++|.++.++  .++.+++|++|++++|.+.+...+..++.+++|++|++++|.++...+
T Consensus       106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~  170 (606)
T 3vq2_A          106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV  170 (606)
T ss_dssp             CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred             CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence            999999999999876  588999999999999999875445678999999999999999988764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.67  E-value=3e-16  Score=109.79  Aligned_cols=127  Identities=23%  Similarity=0.243  Sum_probs=78.1

Q ss_pred             CCCCEEECCCCCCc--Cc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccCCC-CCC-CCCCCCccEEEc
Q psy14661         68 TNCEKLSLSTNMIE--KI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEK-TKG-IGVMRKLKVLYM  142 (202)
Q Consensus        68 ~~L~~L~l~~n~i~--~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l  142 (202)
                      ++++.|++++|.++  .+ ..+..+++|++|++++|.++.+ .....+++|+.|++++|.+++ +|. +..+++|+.|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            34444444444444  22 3334445555555555555444 222223556666666666655 442 445677888888


Q ss_pred             cCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccCc
Q psy14661        143 SNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGE  198 (202)
Q Consensus       143 ~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~~  198 (202)
                      ++|.+++++.+..+..+++|+++++++|+++..+   .++...+..+++|+.||..
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN---DYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST---THHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH---HHHHHHHHHCCCcccccCC
Confidence            8888877654457788888999999999888775   3344467888999888864

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.67  E-value=3e-16  Score=120.54  Aligned_cols=108  Identities=24%  Similarity=0.305  Sum_probs=56.6

Q ss_pred             CCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCcE
Q psy14661         42 IPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEE  117 (202)
Q Consensus        42 ~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~  117 (202)
                      ..+++++.|++++|.+..++. .+..+++|+.|++++|.++.+  ..+..+++|++|++++|.++.++. ....+++|+.
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  128 (276)
T 2z62_A           49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE  128 (276)
T ss_dssp             TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred             ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence            345556666666666555554 255566666666666665554  345555555555555555554432 2233345555


Q ss_pred             EEcccccCCC--CC-CCCCCCCccEEEccCCcccC
Q psy14661        118 LWVSYNYIEK--TK-GIGVMRKLKVLYMSNNLVKE  149 (202)
Q Consensus       118 L~l~~n~l~~--~~-~~~~~~~L~~L~l~~n~l~~  149 (202)
                      |++++|.++.  +| .+..+++|+.|++++|.+++
T Consensus       129 L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             EECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence            5555555544  23 24445555555555554443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=3.1e-16  Score=114.81  Aligned_cols=129  Identities=17%  Similarity=0.221  Sum_probs=109.3

Q ss_pred             CCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccc-cCCcccccCCCcEE
Q psy14661         42 IPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-FAGLEPLAETLEEL  118 (202)
Q Consensus        42 ~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~L~~L  118 (202)
                      ..+++++.|++++|.+..++ .+..+++|+.|++++|.++..  ..+..+++|++|++++|.++. .+.....+++|+.|
T Consensus        63 ~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  141 (197)
T 4ezg_A           63 EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI  141 (197)
T ss_dssp             GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred             hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence            35678999999999887776 488999999999999999974  889999999999999999986 33334455899999


Q ss_pred             Eccccc-CCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCC
Q psy14661        119 WVSYNY-IEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE  174 (202)
Q Consensus       119 ~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~  174 (202)
                      ++++|. ++.++.+..+++|+.|++++|.+++++   .+..+++|++|++.+|++.+
T Consensus       142 ~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          142 DLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC----
T ss_pred             EccCCCCccccHhhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcccCC
Confidence            999998 888888889999999999999999865   56788999999999999865

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=5e-16  Score=110.78  Aligned_cols=132  Identities=24%  Similarity=0.187  Sum_probs=111.5

Q ss_pred             ccCCCCCEEECCCCCCc--Cc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccCCC-CCC-CCCCCCccE
Q psy14661         65 AVLTNCEKLSLSTNMIE--KI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEK-TKG-IGVMRKLKV  139 (202)
Q Consensus        65 ~~l~~L~~L~l~~n~i~--~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~-~~~-~~~~~~L~~  139 (202)
                      ...++|+.|++++|.++  .+ ..+..+++|++|++++|.++.+ .....+++|+.|++++|.++. +|. +..+++|+.
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            34589999999999998  55 5568899999999999999887 444555899999999999998 664 556899999


Q ss_pred             EEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccCccC
Q psy14661        140 LYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVL  200 (202)
Q Consensus       140 L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~~~~  200 (202)
                      |++++|.+++++.+..+..+++|++|++++|+++..+   .++...+..+++|++|+...+
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~---~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN---DYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST---THHHHHHTTCSSCCEETTEET
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH---HHHHHHHHhCccCcEecCCCC
Confidence            9999999999776568899999999999999999875   344457889999999986554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.66  E-value=4.6e-16  Score=130.48  Aligned_cols=139  Identities=22%  Similarity=0.226  Sum_probs=119.8

Q ss_pred             hcCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCC
Q psy14661         39 ENGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAET  114 (202)
Q Consensus        39 ~~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~  114 (202)
                      .+...+.+++.|++++|.+..+++ .+..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++ ..+..+++
T Consensus        22 ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (570)
T 2z63_A           22 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  101 (570)
T ss_dssp             CCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             cCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence            334456789999999999988876 499999999999999999988  56889999999999999998776 45556689


Q ss_pred             CcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661        115 LEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD  177 (202)
Q Consensus       115 L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  177 (202)
                      |++|++++|.++.++  .++.+++|++|++++|.+.+++.+..++.+++|++|++++|.++...+
T Consensus       102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~  166 (570)
T 2z63_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (570)
T ss_dssp             CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred             cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence            999999999999887  388999999999999999875545678899999999999999988763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=1.3e-16  Score=111.68  Aligned_cols=128  Identities=24%  Similarity=0.200  Sum_probs=110.7

Q ss_pred             CCCCCCceEEEccCcccc--ccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccc-cCCcccccCCCcE
Q psy14661         41 GIPISEAKEVGLQMQFIE--KMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS-FAGLEPLAETLEE  117 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~--~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~L~~  117 (202)
                      ...+++++.|++++|.+.  .+|..+..+++|+.|++++|.++.+..+..+++|++|++++|.++. ++.....+++|+.
T Consensus        13 ~~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           13 NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             TCCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             cCCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            345678999999999987  8888889999999999999999988888899999999999999987 6665555689999


Q ss_pred             EEcccccCCCCC---CCCCCCCccEEEccCCcccCcccc--ccCCCCCcceEEEec
Q psy14661        118 LWVSYNYIEKTK---GIGVMRKLKVLYMSNNLVKEWAEF--VKLGECPSLIDLVFC  168 (202)
Q Consensus       118 L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~l~l~  168 (202)
                      |++++|.+++++   .+..+++|+.|++++|.+++++..  ..+..+++|++++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            999999999864   578899999999999999886541  357788999998875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.65  E-value=1.1e-15  Score=120.94  Aligned_cols=143  Identities=23%  Similarity=0.273  Sum_probs=96.3

Q ss_pred             CCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccc
Q psy14661         44 ISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYN  123 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  123 (202)
                      +++++.|++++|.+..++. +..+++|+.+++++|.++....+..+++|++|++++|.++.++. ...+++|+.|++++|
T Consensus       176 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n  253 (347)
T 4fmz_A          176 LTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN  253 (347)
T ss_dssp             CTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             CCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC
Confidence            3445555555555554444 55555555555555555555336666777777777777776655 333467888888888


Q ss_pred             cCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661        124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG  197 (202)
Q Consensus       124 ~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~  197 (202)
                      .++.++.+..+++|+.|++++|.+++++   .+..+++|+.|++++|.+....+.      .+..+++|++|+-
T Consensus       254 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L  318 (347)
T 4fmz_A          254 QISDINAVKDLTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNEDME------VIGGLTNLTTLFL  318 (347)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCGGGHH------HHHTCTTCSEEEC
T ss_pred             ccCCChhHhcCCCcCEEEccCCccCCCh---hhcCCCCCCEEECcCCcCCCcChh------HhhccccCCEEEc
Confidence            8777766777788888888888877753   466778888888888888765532      5677888887763

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.65  E-value=4.8e-16  Score=131.67  Aligned_cols=143  Identities=24%  Similarity=0.304  Sum_probs=126.2

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY  122 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  122 (202)
                      .+.+|+.|++++|.+..++. +..+++|+.|++++|.++.+..+..+++|++|++++|.++.++.+.. +++|+.|++++
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~-l~~L~~L~Ls~  118 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKD-LKKLKSLSLEH  118 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTT-CTTCCEEECTT
T ss_pred             cCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhcc-CCCCCEEEecC
Confidence            45679999999999998875 89999999999999999999669999999999999999998775444 48999999999


Q ss_pred             ccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccCc
Q psy14661        123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGE  198 (202)
Q Consensus       123 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~~  198 (202)
                      |.++.++.+..+++|+.|++++|.++++   ..+..+++|+.|++++|.+....        .+..+++|+.|+.+
T Consensus       119 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~--------~l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          119 NGISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIV--------PLAGLTKLQNLYLS  183 (605)
T ss_dssp             SCCCCCGGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCG--------GGTTCTTCCEEECC
T ss_pred             CCCCCCccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCch--------hhccCCCCCEEECc
Confidence            9999998889999999999999999986   36788999999999999998875        25778999987743

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.65  E-value=1.2e-15  Score=128.99  Aligned_cols=149  Identities=17%  Similarity=0.145  Sum_probs=124.1

Q ss_pred             hhcCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccC
Q psy14661         38 EENGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAE  113 (202)
Q Consensus        38 ~~~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~  113 (202)
                      ..+...+..++.|++++|.+..+++ .+..+++|++|++++|.++.+  ..|..+++|++|++++|.++.++ ..+..++
T Consensus        26 ~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  105 (606)
T 3t6q_A           26 EIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK  105 (606)
T ss_dssp             SCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred             cCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence            3344456789999999999988854 599999999999999999987  67899999999999999998764 4555668


Q ss_pred             CCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCC
Q psy14661        114 TLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPN  191 (202)
Q Consensus       114 ~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~  191 (202)
                      +|+.|++++|.++.++  .++.+++|++|++++|.+.+++.. .+..+++|++|++++|.++...+.      .++.+++
T Consensus       106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~  178 (606)
T 3t6q_A          106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLSKE------DMSSLQQ  178 (606)
T ss_dssp             TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEECHH------HHHTTTT
T ss_pred             cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc-cccCCcccCEEEcccCcccccChh------hhhhhcc
Confidence            9999999999999873  588999999999999999886432 444589999999999999877632      5777888


Q ss_pred             cc
Q psy14661        192 LK  193 (202)
Q Consensus       192 L~  193 (202)
                      |+
T Consensus       179 L~  180 (606)
T 3t6q_A          179 AT  180 (606)
T ss_dssp             CC
T ss_pred             cc
Confidence            87

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.65  E-value=1.7e-15  Score=121.70  Aligned_cols=144  Identities=21%  Similarity=0.215  Sum_probs=120.3

Q ss_pred             CCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEE
Q psy14661         43 PISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEEL  118 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L  118 (202)
                      .+.+++.++++++.++.+|.. +..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++ ..+..+++|+.|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            356789999999999999987 78899999999999999987  57889999999999999998776 445556899999


Q ss_pred             EcccccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        119 WVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       119 ~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      ++++|.++.+|.  +..+++|++|++++|.+..++. ..+..+++|++|++++|.++...         +..+++|+.|+
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---------~~~l~~L~~L~  192 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD---------LSLIPSLFHAN  192 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCC---------GGGCTTCSEEE
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCccc---------cccccccceee
Confidence            999999998873  6889999999999999987643 56788999999999999988764         24456665544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.65  E-value=5.6e-16  Score=127.63  Aligned_cols=157  Identities=20%  Similarity=0.189  Sum_probs=122.1

Q ss_pred             HhhhhhhcCCCCCCceEEEccCcccccc-chhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-Cc
Q psy14661         33 LKKWEEENGIPISEAKEVGLQMQFIEKM-DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GL  108 (202)
Q Consensus        33 ~~~~~~~~~~~~~~l~~L~l~~~~i~~l-~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~  108 (202)
                      +....+.....+++|+.|++++|.+..+ |..+..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.+. ..
T Consensus        44 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~  123 (477)
T 2id5_A           44 IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM  123 (477)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT
T ss_pred             cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhH
Confidence            3334344456778899999999998887 45589999999999999999988  45788999999999999988654 44


Q ss_pred             ccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHH
Q psy14661        109 EPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVK  186 (202)
Q Consensus       109 ~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~  186 (202)
                      +..+++|+.|++++|.++.++  .+..+++|+.|++++|.+++++. ..+..+++|+.|++.+|.+....+.      .+
T Consensus       124 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~------~~  196 (477)
T 2id5_A          124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRDY------SF  196 (477)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECTT------CS
T ss_pred             ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeChh------hc
Confidence            555689999999999988764  57888899999999998887653 4577888888888888888776532      34


Q ss_pred             HhCCCccccc
Q psy14661        187 KRLPNLKKLD  196 (202)
Q Consensus       187 ~~l~~L~~L~  196 (202)
                      ..+++|+.|+
T Consensus       197 ~~l~~L~~L~  206 (477)
T 2id5_A          197 KRLYRLKVLE  206 (477)
T ss_dssp             CSCTTCCEEE
T ss_pred             ccCcccceee
Confidence            5566666655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.64  E-value=1e-15  Score=119.90  Aligned_cols=144  Identities=15%  Similarity=0.174  Sum_probs=76.7

Q ss_pred             CCCceEEEccCcccc-ccchhhccCCCCCEEECCCCCCcCc--cCCCCCC-CCcEEEccCcccc-ccCCcccccCCCcEE
Q psy14661         44 ISEAKEVGLQMQFIE-KMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLK-KLKVLSLARNNIK-SFAGLEPLAETLEEL  118 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~-~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~-~L~~L~l~~n~l~-~~~~~~~~~~~L~~L  118 (202)
                      +++|+.|++++|.+. .+|..+..+++|++|++++|.+++.  ..+..++ .|++|++++|.++ ..+.....+ +|+.|
T Consensus       124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~L~~L  202 (313)
T 1ogq_A          124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFV  202 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEE
T ss_pred             CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-cccEE
Confidence            334444444444433 3344444444444444444444422  3344443 4455555555444 222222222 25555


Q ss_pred             EcccccCCCC-C-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        119 WVSYNYIEKT-K-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       119 ~l~~n~l~~~-~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      ++++|.++.. + .+..+++|+.|++++|.++....  .+..+++|++|++++|.++...|.      .+..+++|++|+
T Consensus       203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~  274 (313)
T 1ogq_A          203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQ------GLTQLKFLHSLN  274 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECCCG------GGGGCTTCCEEE
T ss_pred             ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC--cccccCCCCEEECcCCcccCcCCh------HHhcCcCCCEEE
Confidence            5555555532 2 35667777777777777765322  366677788888888877755543      456677777665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.64  E-value=4e-16  Score=123.92  Aligned_cols=150  Identities=17%  Similarity=0.154  Sum_probs=124.6

Q ss_pred             cCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC--cccccCC
Q psy14661         40 NGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG--LEPLAET  114 (202)
Q Consensus        40 ~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~  114 (202)
                      ....+++|+.|++++|.+..+++ .+..+++|++|++++|.++.+  ..+..+++|++|++++|.++.++.  ....+++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~  150 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK  150 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence            34567889999999999888865 499999999999999999988  348889999999999999998775  5556689


Q ss_pred             CcEEEcccc-cCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCC
Q psy14661        115 LEELWVSYN-YIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPN  191 (202)
Q Consensus       115 L~~L~l~~n-~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~  191 (202)
                      |+.|++++| .++.++  .+..+++|+.|++++|.+.+.. +..+..+++|+++++++|.+...+      ...+..+++
T Consensus       151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~------~~~~~~~~~  223 (353)
T 2z80_A          151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHILLL------EIFVDVTSS  223 (353)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-TTTTTTCSEEEEEEEECSCSTTHH------HHHHHHTTT
T ss_pred             CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC-HHHHhccccCCeecCCCCccccch------hhhhhhccc
Confidence            999999999 466664  5888999999999999998753 357888999999999999986553      124566888


Q ss_pred             ccccc
Q psy14661        192 LKKLD  196 (202)
Q Consensus       192 L~~L~  196 (202)
                      |+.|+
T Consensus       224 L~~L~  228 (353)
T 2z80_A          224 VECLE  228 (353)
T ss_dssp             EEEEE
T ss_pred             ccEEE
Confidence            88776

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=5e-15  Score=106.45  Aligned_cols=128  Identities=19%  Similarity=0.258  Sum_probs=110.0

Q ss_pred             ceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCcEEEcccc
Q psy14661         47 AKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELWVSYN  123 (202)
Q Consensus        47 l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n  123 (202)
                      .+.++++++++..+|..+  .++++.|++++|.++.+  ..+..+++|++|++++|.++.++. .+..+++|+.|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            567899999999888654  37999999999999988  457889999999999999998774 3455689999999999


Q ss_pred             cCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661        124 YIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD  177 (202)
Q Consensus       124 ~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  177 (202)
                      .++.++.  +..+++|+.|++++|.++.++. ..+..+++|+++++++|++.+.++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeeccCc
Confidence            9998873  7889999999999999998754 456889999999999999998763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.64  E-value=4.5e-16  Score=111.97  Aligned_cols=134  Identities=24%  Similarity=0.334  Sum_probs=114.4

Q ss_pred             hccCCCCCEEECCCCCCcCccCCCCCC-CCcEEEccCccccccCCcccccCCCcEEEcccccCCCCC-C-CCCCCCccEE
Q psy14661         64 LAVLTNCEKLSLSTNMIEKINGLSGLK-KLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTK-G-IGVMRKLKVL  140 (202)
Q Consensus        64 l~~l~~L~~L~l~~n~i~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~-~-~~~~~~L~~L  140 (202)
                      +..+++|+.|++++|.++.++.+..+. +|++|++++|.++.++.+ ..+++|+.|++++|.++.+| . +..+++|+.|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCC-CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccccc-ccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            667889999999999999886666665 999999999999987544 44589999999999999887 4 4889999999


Q ss_pred             EccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccCccCC
Q psy14661        141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVLP  201 (202)
Q Consensus       141 ~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~  201 (202)
                      ++++|.+++++.+..+..+++|+++++++|+++..+   .++...+..+++|+.||...++
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~---~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK---HYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST---THHHHHHHHCTTCSEETTEECC
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH---hHHHHHHHHCCccceeCCCcCC
Confidence            999999998876567889999999999999998774   5555678999999999977653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.64  E-value=1.6e-16  Score=124.64  Aligned_cols=145  Identities=17%  Similarity=0.126  Sum_probs=96.2

Q ss_pred             CCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCC-CCCCCCcEEEccCccccccCCcccccCCCcEEE
Q psy14661         44 ISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGL-SGLKKLKVLSLARNNIKSFAGLEPLAETLEELW  119 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~  119 (202)
                      +++++.|++++|.+..+++ .+..+++|+.|++++|.++..  ..+ ..+++|++|++++|.++.++.... +++|+.|+
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-l~~L~~L~  197 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLD  197 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC-CTTCCEEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc-cccCCEEE
Confidence            4556666666666666554 366677777777777777765  333 356777777777777776654443 36778888


Q ss_pred             cccccCCCCC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        120 VSYNYIEKTK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       120 l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      +++|.++.++ .+..+++|+.|++++|.+++++.  .+..+++|+.+++++|++.+..     ....+..+++|+.++
T Consensus       198 Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~l~~L~~L~l~~N~~~~~~-----~~~~~~~~~~L~~l~  268 (317)
T 3o53_A          198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFHCGT-----LRDFFSKNQRVQTVA  268 (317)
T ss_dssp             CCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT--TCCCCTTCCEEECTTCCCBHHH-----HHHHHHTCHHHHHHH
T ss_pred             CCCCcCCcchhhhcccCcccEEECcCCcccchhh--HhhcCCCCCEEEccCCCccCcC-----HHHHHhccccceEEE
Confidence            8888777765 46677788888888887776543  5677778888888888876321     112445555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.63  E-value=5.8e-15  Score=120.68  Aligned_cols=137  Identities=28%  Similarity=0.260  Sum_probs=117.4

Q ss_pred             CCceEEEccCccccccc-hhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEc
Q psy14661         45 SEAKEVGLQMQFIEKMD-SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWV  120 (202)
Q Consensus        45 ~~l~~L~l~~~~i~~l~-~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l  120 (202)
                      ++++.|++++|.+..++ ..+..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++ ..+..+++|+.|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            57999999999977764 4589999999999999999987  57889999999999999998764 45555689999999


Q ss_pred             ccccCCCC-C-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhH
Q psy14661        121 SYNYIEKT-K-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYK  182 (202)
Q Consensus       121 ~~n~l~~~-~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  182 (202)
                      ++|.++.+ | .+..+++|+.|++++|.+++++. ..+..+++|+++++++|++++.++.-.+.
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCH-hHhccCCcccEEEccCCCcccCCCcchHH
Confidence            99999886 4 58899999999999999998654 46788999999999999999988633333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.63  E-value=1.1e-15  Score=119.52  Aligned_cols=147  Identities=20%  Similarity=0.180  Sum_probs=78.0

Q ss_pred             CCCCceEEEccCccccccchhhccC-----CCCCEEECCCCCCcCc--cCCCCCC-------------------------
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVL-----TNCEKLSLSTNMIEKI--NGLSGLK-------------------------   90 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l-----~~L~~L~l~~n~i~~~--~~~~~l~-------------------------   90 (202)
                      .+++++.|++++|.+..+|..+..+     ++|++|++++|.++.+  ..+..++                         
T Consensus       119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            4455666666666555444333333     4555555555555444  3344444                         


Q ss_pred             ---CCcEEEccCccccccCC----cccccCCCcEEEcccccCCCCC---CCCCCCCccEEEccCCcccCccccccCCCCC
Q psy14661         91 ---KLKVLSLARNNIKSFAG----LEPLAETLEELWVSYNYIEKTK---GIGVMRKLKVLYMSNNLVKEWAEFVKLGECP  160 (202)
Q Consensus        91 ---~L~~L~l~~n~l~~~~~----~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~  160 (202)
                         +|++|++++|.++.++.    ....+++|+.|++++|.+++.+   .+..+++|+.|++++|.++.++.  .+.  +
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~--~  274 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK--GLP--A  274 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS--SCC--S
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh--hcc--C
Confidence               44555555554442221    1112346666666666665532   24445667777777776665443  233  6


Q ss_pred             cceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc--CccCC
Q psy14661        161 SLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD--GEVLP  201 (202)
Q Consensus       161 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~--~~~~~  201 (202)
                      +|++|++++|.++..+        .+..+++|++|+  +++++
T Consensus       275 ~L~~L~Ls~N~l~~~p--------~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRNP--------SPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             EEEEEECCSSCCCSCC--------CTTTSCEEEEEECTTCTTT
T ss_pred             CceEEECCCCCCCCCh--------hHhhCCCCCEEeccCCCCC
Confidence            6777777777776663        235567776654  44443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.63  E-value=3e-15  Score=120.30  Aligned_cols=105  Identities=24%  Similarity=0.304  Sum_probs=52.1

Q ss_pred             CCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCcEEE
Q psy14661         44 ISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELW  119 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~  119 (202)
                      +++++.|++++|.+..+++ .+..+++|++|++++|.++.+  ..+..+++|++|++++|.++.++. .+..+++|+.|+
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence            3445555555555555443 355555555555555555554  234455555555555555554442 223334555555


Q ss_pred             cccccCCCCC--CCCCCCCccEEEccCCccc
Q psy14661        120 VSYNYIEKTK--GIGVMRKLKVLYMSNNLVK  148 (202)
Q Consensus       120 l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~  148 (202)
                      +++|.++.++  .+..+++|+.|++++|.++
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            5555554443  2444455555555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.63  E-value=6.5e-16  Score=120.70  Aligned_cols=146  Identities=17%  Similarity=0.142  Sum_probs=98.9

Q ss_pred             CCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcC---c---cCCCCCCCCcEEEccCccccccCC----ccccc
Q psy14661         44 ISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEK---I---NGLSGLKKLKVLSLARNNIKSFAG----LEPLA  112 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~---~---~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~  112 (202)
                      +++++.|++++|.+..+++ .+..+++|+.|++++|.+..   +   ..+..+++|++|++++|.++.++.    ....+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            5567777777777666554 36677777777777777553   2   223566777777777777765543    23344


Q ss_pred             CCCcEEEcccccCCCC-C-CCCCC---CCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHH
Q psy14661        113 ETLEELWVSYNYIEKT-K-GIGVM---RKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKK  187 (202)
Q Consensus       113 ~~L~~L~l~~n~l~~~-~-~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~  187 (202)
                      ++|+.|++++|.+++. | .+..+   ++|++|++++|.++.++.  .+  .++|+.|++++|.++..+        ...
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~~--~~~L~~L~Ls~N~l~~~~--------~~~  291 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK--GL--PAKLRVLDLSSNRLNRAP--------QPD  291 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS--CC--CSCCSCEECCSCCCCSCC--------CTT
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh--hh--cCCCCEEECCCCcCCCCc--------hhh
Confidence            7888888888888875 4 34444   688889998888887654  33  278889999999888764        235


Q ss_pred             hCCCccccc--CccCC
Q psy14661        188 RLPNLKKLD--GEVLP  201 (202)
Q Consensus       188 ~l~~L~~L~--~~~~~  201 (202)
                      .+++|+.|+  +++++
T Consensus       292 ~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          292 ELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             SCCCCSCEECSSTTTS
T ss_pred             hCCCccEEECcCCCCC
Confidence            678887655  55554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.62  E-value=3.4e-15  Score=126.42  Aligned_cols=104  Identities=24%  Similarity=0.303  Sum_probs=49.0

Q ss_pred             CCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCcEEEc
Q psy14661         45 SEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELWV  120 (202)
Q Consensus        45 ~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l  120 (202)
                      ++|+.|++++|.+..+++ .+..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++. .+..+++|+.|++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            345555555555444443 244555555555555555544  234445555555555555544442 2233345555555


Q ss_pred             ccccCCCCC--CCCCCCCccEEEccCCccc
Q psy14661        121 SYNYIEKTK--GIGVMRKLKVLYMSNNLVK  148 (202)
Q Consensus       121 ~~n~l~~~~--~~~~~~~L~~L~l~~n~l~  148 (202)
                      ++|.++.++  .+..+++|+.|++++|.++
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            555554433  2444444555555444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.62  E-value=1.6e-15  Score=126.81  Aligned_cols=135  Identities=19%  Similarity=0.154  Sum_probs=100.8

Q ss_pred             CCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCc
Q psy14661         41 GIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLE  116 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~  116 (202)
                      ...+.+++.|++++|.+..+++ .+..+++|++|++++|.++.+  ..|..+++|++|++++|.++.++. .+..+++|+
T Consensus        22 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  101 (549)
T 2z81_A           22 SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK  101 (549)
T ss_dssp             SCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred             ccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence            3345678888888888777653 488888888888888888877  568888888888888888887663 244557888


Q ss_pred             EEEcccccCCCC--C-CCCCCCCccEEEccCCc-ccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661        117 ELWVSYNYIEKT--K-GIGVMRKLKVLYMSNNL-VKEWAEFVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       117 ~L~l~~n~l~~~--~-~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      +|++++|.++.+  + .++.+++|+.|++++|. +..++ ...+..+++|++|++++|.+....
T Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~  164 (549)
T 2z81_A          102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKALSLRNYQ  164 (549)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEEC
T ss_pred             EEECCCCcccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeeeccCCcccccC
Confidence            888888888754  3 47778888888888887 44433 245677788888888888776644

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.62  E-value=5.5e-15  Score=125.14  Aligned_cols=143  Identities=21%  Similarity=0.216  Sum_probs=123.4

Q ss_pred             CCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEE
Q psy14661         44 ISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELW  119 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~  119 (202)
                      +.+++.+++++|.++.+|+. +..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++ ..+..+++|+.|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            46689999999999999987 78899999999999999988  58999999999999999999877 3456668999999


Q ss_pred             cccccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        120 VSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       120 l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      +++|.++.+|.  |+.+++|+.|++++|.+..++. ..+..+++|++|++++|.++..+         ++.+++|+.|+
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---------~~~l~~L~~L~  198 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD---------LSLIPSLFHAN  198 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC---------GGGCTTCSEEE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC---------hhhhhhhhhhh
Confidence            99999999883  6899999999999999988643 57889999999999999998874         24466666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.61  E-value=4.1e-15  Score=125.79  Aligned_cols=141  Identities=20%  Similarity=0.194  Sum_probs=118.2

Q ss_pred             EEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEcccccC
Q psy14661         49 EVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYNYI  125 (202)
Q Consensus        49 ~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l  125 (202)
                      +.+-++.++..+|..+.  +++++|++++|.|+.+  ..|..+++|++|++++|.++.++ +.+..+++|++|++++|.+
T Consensus        35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence            44555556888887553  5899999999999998  57999999999999999999887 4556668999999999999


Q ss_pred             CCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661        126 EKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG  197 (202)
Q Consensus       126 ~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~  197 (202)
                      +.+|  .|..+++|++|++++|.++.++. ..++.+++|++|++++|.+.....+.     .++.+++|++|+-
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~-----~~~~l~~L~~L~L  180 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE-----YFSNLTNLEHLDL  180 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG-----GGGGCTTCCEEEC
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCCch-----hhccchhhhhhcc
Confidence            9987  48999999999999999998754 46899999999999999998764322     5677888988763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.61  E-value=3.3e-15  Score=128.01  Aligned_cols=150  Identities=20%  Similarity=0.204  Sum_probs=110.2

Q ss_pred             cCCCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCC
Q psy14661         40 NGIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETL  115 (202)
Q Consensus        40 ~~~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L  115 (202)
                      +...+.+++.|++++|.+..+++. +..+++|+.|++++|.++.+  ..+..+++|++|++++|.++.++. .+..+++|
T Consensus        20 p~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L   99 (680)
T 1ziw_A           20 PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL   99 (680)
T ss_dssp             CSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence            333456788888888888777764 88888888888888888876  456778888888888888887774 35555788


Q ss_pred             cEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHH--HhCCC
Q psy14661        116 EELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVK--KRLPN  191 (202)
Q Consensus       116 ~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~--~~l~~  191 (202)
                      ++|++++|.++.++  .++.+++|++|++++|.+.+.. +..+..+++|++|++.+|.++...+.      .+  ..+++
T Consensus       100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~~~~~~  172 (680)
T 1ziw_A          100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQALKSE------ELDIFANSS  172 (680)
T ss_dssp             SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCCCCBCHH------HHGGGTTCE
T ss_pred             CEEECCCCccCccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccCCcccccCHH------Hhhcccccc
Confidence            88888888887765  4778888888888888877643 34567788888888888887766521      22  23466


Q ss_pred             ccccc
Q psy14661        192 LKKLD  196 (202)
Q Consensus       192 L~~L~  196 (202)
                      |++|+
T Consensus       173 L~~L~  177 (680)
T 1ziw_A          173 LKKLE  177 (680)
T ss_dssp             ESEEE
T ss_pred             ccEEE
Confidence            66665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=4e-16  Score=131.30  Aligned_cols=125  Identities=23%  Similarity=0.332  Sum_probs=109.7

Q ss_pred             CCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCccc
Q psy14661         69 NCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVK  148 (202)
Q Consensus        69 ~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~  148 (202)
                      .|+.|++++|.++.++.+..+++|++|++++|.++.+|..++.+++|+.|++++|.++++|.++.+++|+.|++++|.++
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~  521 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ  521 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCC
Confidence            68999999999999966999999999999999999998767777999999999999999998899999999999999999


Q ss_pred             CccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        149 EWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       149 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      ++..+..++.+++|+.|++++|+++..++.   .......+|+|+.||
T Consensus       522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~---~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGI---QERLAEMLPSVSSIL  566 (567)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSSSC---TTHHHHHCTTCSEEE
T ss_pred             CCCCcHHHhcCCCCCEEEecCCcCCCCccH---HHHHHHHCcccCccC
Confidence            874245788999999999999999988632   223567799999885

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.61  E-value=6.7e-15  Score=115.75  Aligned_cols=126  Identities=27%  Similarity=0.327  Sum_probs=62.2

Q ss_pred             ceEEEccCccccccchh-hccCCCCCEEECCCCCCcC--c--cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcc
Q psy14661         47 AKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEK--I--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS  121 (202)
Q Consensus        47 l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~--~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  121 (202)
                      ++.|++++|.+..++.. +..+++|+.|++++|.++.  .  ..+..+++|++|++++|.++.++....  ++|+.|+++
T Consensus       123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~  200 (330)
T 1xku_A          123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLD  200 (330)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECT
T ss_pred             ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECC
Confidence            44444444444433332 4555666666666665543  1  334455556666665555554442221  345555555


Q ss_pred             cccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCC
Q psy14661        122 YNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEG  175 (202)
Q Consensus       122 ~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~  175 (202)
                      +|.++.++  .+..+++|+.|++++|.+++++. ..+..+++|++|++++|.++..
T Consensus       201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l  255 (330)
T 1xku_A          201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKV  255 (330)
T ss_dssp             TSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCSSC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCccC
Confidence            55554432  24455555555555555554321 2344455555555555555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.60  E-value=5.4e-16  Score=121.41  Aligned_cols=129  Identities=19%  Similarity=0.178  Sum_probs=86.9

Q ss_pred             CCceEEEccCcccc---ccchhhccCCCCCEEECCC-CCCcCc--cCCCCCCCCcEEEccCcccc-ccCCcccccCCCcE
Q psy14661         45 SEAKEVGLQMQFIE---KMDSSLAVLTNCEKLSLST-NMIEKI--NGLSGLKKLKVLSLARNNIK-SFAGLEPLAETLEE  117 (202)
Q Consensus        45 ~~l~~L~l~~~~i~---~l~~~l~~l~~L~~L~l~~-n~i~~~--~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~L~~  117 (202)
                      .+++.|++++|.+.   .+|..+..+++|+.|++++ |.+.+.  ..+..+++|++|++++|.++ .++..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            56888888888865   5777788888888888884 777654  56777777788888777776 45544445567777


Q ss_pred             EEcccccCCC-CC-CCCCCCCccEEEccCCcccCccccccCCCCC-cceEEEecCCcCCC
Q psy14661        118 LWVSYNYIEK-TK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECP-SLIDLVFCGNPLVE  174 (202)
Q Consensus       118 L~l~~n~l~~-~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~l~l~~n~~~~  174 (202)
                      |++++|.++. +| .+..+++|++|++++|.+++. .+..+..++ +|+++++++|.++.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~~L~~L~L~~N~l~~  188 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSEEEE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc-CCHHHhhhhhcCcEEECcCCeeec
Confidence            7777777763 44 466677777777777776531 123445554 56666666666553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.60  E-value=4.2e-15  Score=130.46  Aligned_cols=143  Identities=17%  Similarity=0.218  Sum_probs=119.2

Q ss_pred             hhhhhhcCCCCCCceEEEccCccccccc-hhhccCCCCCEEECCCCCCc-Cc--cCCCCCCCCcEEEccCcccccc-CCc
Q psy14661         34 KKWEEENGIPISEAKEVGLQMQFIEKMD-SSLAVLTNCEKLSLSTNMIE-KI--NGLSGLKKLKVLSLARNNIKSF-AGL  108 (202)
Q Consensus        34 ~~~~~~~~~~~~~l~~L~l~~~~i~~l~-~~l~~l~~L~~L~l~~n~i~-~~--~~~~~l~~L~~L~l~~n~l~~~-~~~  108 (202)
                      .+|...+. .+++++.|++++|.+..++ ..+..+++|+.|++++|... .+  ..|..+++|++|++++|.++.+ +..
T Consensus        14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA   92 (844)
T ss_dssp             CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred             CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence            34555555 7789999999999988875 45999999999999999544 44  6789999999999999999876 456


Q ss_pred             ccccCCCcEEEcccccCCC-CC-C--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661        109 EPLAETLEELWVSYNYIEK-TK-G--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD  177 (202)
Q Consensus       109 ~~~~~~L~~L~l~~n~l~~-~~-~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  177 (202)
                      +..+++|+.|++++|.+++ ++ .  ++.+++|++|++++|.+.+......++.+++|++|++++|.+....+
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred             ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence            6667899999999999986 34 3  88999999999999999886543578899999999999999988764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=6.8e-15  Score=117.34  Aligned_cols=145  Identities=20%  Similarity=0.172  Sum_probs=118.1

Q ss_pred             ceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCC-CCCCCcEEEccCccccccC-CcccccCCCcEEEccc
Q psy14661         47 AKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLS-GLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSY  122 (202)
Q Consensus        47 l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~-~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~  122 (202)
                      -+.++++++.+..+|..+.  +.++.|++++|.++.+  ..+. .+++|++|++++|.++.++ ..+..+++|+.|++++
T Consensus        20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            4678999999999998543  5689999999999998  4566 8999999999999999877 4455568999999999


Q ss_pred             ccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661        123 NYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG  197 (202)
Q Consensus       123 n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~  197 (202)
                      |.++.++  .|..+++|+.|++++|.+..++ ...+..+++|++|++++|.++..++.  ... .+..+++|+.|+-
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~--~~~-~~~~l~~L~~L~L  170 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISRFPVE--LIK-DGNKLPKLMLLDL  170 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCGG--GTC-----CTTCCEEEC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCeeCHH--Hhc-CcccCCcCCEEEC
Confidence            9999876  3889999999999999999864 35788999999999999999998632  100 1156888888763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.60  E-value=7.5e-15  Score=115.63  Aligned_cols=104  Identities=25%  Similarity=0.317  Sum_probs=80.6

Q ss_pred             CCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCCcccccCCCcEEE
Q psy14661         43 PISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELW  119 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~  119 (202)
                      .+++++.|++++|.+..+++ .+..+++|+.|++++|.++.+  ..+..+++|++|++++|.++.++....  ++|++|+
T Consensus        52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~  129 (332)
T 2ft3_A           52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELR  129 (332)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEE
T ss_pred             CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEE
Confidence            45578889999998888765 588889999999999988887  568888889999998888887764333  5778888


Q ss_pred             cccccCCCCCC--CCCCCCccEEEccCCccc
Q psy14661        120 VSYNYIEKTKG--IGVMRKLKVLYMSNNLVK  148 (202)
Q Consensus       120 l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~  148 (202)
                      +++|.++.++.  +..+++|+.|++++|.++
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            88887777652  666777777777777664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.60  E-value=1.2e-14  Score=121.45  Aligned_cols=127  Identities=24%  Similarity=0.298  Sum_probs=68.7

Q ss_pred             CCCCceEEEccCccccccch---hhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEE
Q psy14661         43 PISEAKEVGLQMQFIEKMDS---SLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEEL  118 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~---~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L  118 (202)
                      .+++++.|++++|.+..++.   .+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++....  ++|+.|
T Consensus       359 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L  436 (549)
T 2z81_A          359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVL  436 (549)
T ss_dssp             SSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEE
T ss_pred             ccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc--CCceEE
Confidence            45667777777777666553   366777777777777777766 556666677777777776665443221  233444


Q ss_pred             EcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661        119 WVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       119 ~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      ++++|.+++++  ..+++|+.|++++|.++.++.   ...+++|++|++++|.++..+
T Consensus       437 ~Ls~N~l~~~~--~~l~~L~~L~Ls~N~l~~ip~---~~~l~~L~~L~Ls~N~l~~~~  489 (549)
T 2z81_A          437 DVSNNNLDSFS--LFLPRLQELYISRNKLKTLPD---ASLFPVLLVMKISRNQLKSVP  489 (549)
T ss_dssp             ECCSSCCSCCC--CCCTTCCEEECCSSCCSSCCC---GGGCTTCCEEECCSSCCCCCC
T ss_pred             ECCCCChhhhc--ccCChhcEEECCCCccCcCCC---cccCccCCEEecCCCccCCcC
Confidence            44444333321  234444445555554444332   123444444444444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.60  E-value=3.6e-15  Score=126.14  Aligned_cols=132  Identities=19%  Similarity=0.169  Sum_probs=71.1

Q ss_pred             CCCceEEEccCccccccch--hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccc--cCCcccccCCCcE
Q psy14661         44 ISEAKEVGLQMQFIEKMDS--SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS--FAGLEPLAETLEE  117 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~--~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~L~~  117 (202)
                      +++++.|++++|.+...++  .+..+++|+.|++++|.++..  ..+..+++|++|++++|.++.  .+.....+++|+.
T Consensus       398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  477 (606)
T 3vq2_A          398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF  477 (606)
T ss_dssp             CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCE
Confidence            3444555555554443332  244555555555555555543  345555555666665555553  3333444456666


Q ss_pred             EEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661        118 LWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       118 L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      |++++|.+++++  .+..+++|+.|++++|.+++.. +..+..+++|+.|++++|.++..+
T Consensus       478 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~p  537 (606)
T 3vq2_A          478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIETSK  537 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE-GGGTTTCTTCCEEECTTSCCCCEE
T ss_pred             EECCCCcCCccChhhhcccccCCEEECCCCcCCCcC-HHHccCCCcCCEEECCCCcCcccC
Confidence            666666665543  3556666666666666666542 245566666666666666666543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.59  E-value=7.5e-15  Score=120.03  Aligned_cols=135  Identities=19%  Similarity=0.184  Sum_probs=110.8

Q ss_pred             CCCCceEEEccCccccccc-hhhccCCCCCEEECCCCCCcC-c--cCCCCCCCCcEEEccCcccccc-CCcccccCCCcE
Q psy14661         43 PISEAKEVGLQMQFIEKMD-SSLAVLTNCEKLSLSTNMIEK-I--NGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEE  117 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~-~~l~~l~~L~~L~l~~n~i~~-~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~L~~  117 (202)
                      .+.+++.|++++|.+..++ ..+..+++|++|++++|.+.. +  ..|..+++|++|++++|.++.+ +..+..+++|++
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  107 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV  107 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred             CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence            4577999999999988874 459999999999999998874 3  5688899999999999998876 455555689999


Q ss_pred             EEcccccCCC-CC-C--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661        118 LWVSYNYIEK-TK-G--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD  177 (202)
Q Consensus       118 L~l~~n~l~~-~~-~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  177 (202)
                      |++++|.+++ ++ .  +..+++|+.|++++|.+.+......+..+++|++|++++|.+....+
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence            9999999986 22 3  78889999999999999876432337788999999999999887764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.59  E-value=1.1e-14  Score=119.80  Aligned_cols=102  Identities=29%  Similarity=0.377  Sum_probs=41.3

Q ss_pred             CCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccccc
Q psy14661         45 SEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNY  124 (202)
Q Consensus        45 ~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~  124 (202)
                      ++++.|++++|.+..++. +..+++|+.|++++|.++....+..+++|++|++++|.++.++.+ ..+++|+.|++++|.
T Consensus       221 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~l~~L~~L~L~~n~  298 (466)
T 1o6v_A          221 TNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL-AGLTALTNLELNENQ  298 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGG-TTCTTCSEEECCSSC
T ss_pred             CCCCEEECCCCCcccchh-hhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccc-cCCCccCeEEcCCCc
Confidence            334444444444333322 344444444444444444442244444444444444444433321 112344444444444


Q ss_pred             CCCCCCCCCCCCccEEEccCCccc
Q psy14661        125 IEKTKGIGVMRKLKVLYMSNNLVK  148 (202)
Q Consensus       125 l~~~~~~~~~~~L~~L~l~~n~l~  148 (202)
                      +++++.+..+++|+.|++++|.++
T Consensus       299 l~~~~~~~~l~~L~~L~L~~n~l~  322 (466)
T 1o6v_A          299 LEDISPISNLKNLTYLTLYFNNIS  322 (466)
T ss_dssp             CSCCGGGGGCTTCSEEECCSSCCS
T ss_pred             ccCchhhcCCCCCCEEECcCCcCC
Confidence            443333333334444444444333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.59  E-value=1e-14  Score=119.89  Aligned_cols=141  Identities=23%  Similarity=0.319  Sum_probs=108.0

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY  122 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  122 (202)
                      .+++++.|++++|.+..+++ +..+++|+.|++++|.++.+..+..+++|++|++++|.++.++.+ ..+++|+.|++++
T Consensus       241 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L~~  318 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYF  318 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGG-GGCTTCSEEECCS
T ss_pred             cCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhh-cCCCCCCEEECcC
Confidence            46778888888888777776 778888888888888888875577788888888888888776653 3447888888888


Q ss_pred             ccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       123 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      |.+++++.+..+++|+.|++++|.+++++   .+..+++|+.+++++|.+++..|        +..+++|+.|+
T Consensus       319 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L~  381 (466)
T 1o6v_A          319 NNISDISPVSSLTKLQRLFFYNNKVSDVS---SLANLTNINWLSAGHNQISDLTP--------LANLTRITQLG  381 (466)
T ss_dssp             SCCSCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCBCGG--------GTTCTTCCEEE
T ss_pred             CcCCCchhhccCccCCEeECCCCccCCch---hhccCCCCCEEeCCCCccCccch--------hhcCCCCCEEe
Confidence            88877666677788888888888877753   56777888888888888877652        45677776655

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.59  E-value=7.7e-16  Score=127.45  Aligned_cols=127  Identities=19%  Similarity=0.130  Sum_probs=75.9

Q ss_pred             CCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCC-CCCCCcEEEccCccccccCCcccccCCCcEEE
Q psy14661         44 ISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLS-GLKKLKVLSLARNNIKSFAGLEPLAETLEELW  119 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~  119 (202)
                      +++|+.|++++|.+..+++ .+..+++|+.|++++|.+++.  ..+. .+++|++|++++|.++.++.... +++|+.|+
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~-l~~L~~L~  197 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLD  197 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC-CTTCCEEE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc-CCCCCEEE
Confidence            3445556666655555433 355566666666666666654  3333 45666666666666665544333 35666666


Q ss_pred             cccccCCCCC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCC
Q psy14661        120 VSYNYIEKTK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLV  173 (202)
Q Consensus       120 l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~  173 (202)
                      +++|.++++| .+..+++|+.|++++|.+++++.  .+..+++|+.+++.+|++.
T Consensus       198 Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT--TCCCCTTCCEEECTTCCBC
T ss_pred             CCCCCCCCCCHhHcCCCCccEEEecCCcCcccch--hhccCCCCCEEEcCCCCCc
Confidence            6666666654 45566666666666666665443  4556666677777766665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.59  E-value=9.6e-15  Score=114.86  Aligned_cols=156  Identities=19%  Similarity=0.211  Sum_probs=100.6

Q ss_pred             HhhhhhhcCCCCCCceEEEccCcccccc-chhhccCCCCCEEECCCCCCcCc-cC----------------------CCC
Q psy14661         33 LKKWEEENGIPISEAKEVGLQMQFIEKM-DSSLAVLTNCEKLSLSTNMIEKI-NG----------------------LSG   88 (202)
Q Consensus        33 ~~~~~~~~~~~~~~l~~L~l~~~~i~~l-~~~l~~l~~L~~L~l~~n~i~~~-~~----------------------~~~   88 (202)
                      +....+.....+++|+.|++++|.+..+ |..+..+++|++|++++|.++.+ ..                      +..
T Consensus        64 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~  143 (330)
T 1xku_A           64 ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG  143 (330)
T ss_dssp             CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTT
T ss_pred             CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcC
Confidence            3333333345677788888888887776 45588888888888888877755 22                      334


Q ss_pred             CCCCcEEEccCccccc---cCCcccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEE
Q psy14661         89 LKKLKVLSLARNNIKS---FAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDL  165 (202)
Q Consensus        89 l~~L~~L~l~~n~l~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l  165 (202)
                      +++|++|++++|.++.   .+.....+++|+.|++++|.++.+|.. ..++|+.|++++|.++++. +..+..+++|+.|
T Consensus       144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L  221 (330)
T 1xku_A          144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPPSLTELHLDGNKITKVD-AASLKGLNNLAKL  221 (330)
T ss_dssp             CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-CCTTCSEEECTTSCCCEEC-TGGGTTCTTCCEE
T ss_pred             CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-ccccCCEEECCCCcCCccC-HHHhcCCCCCCEE
Confidence            4455555555555432   112233345666666666666666531 1267777888888777653 3567888889999


Q ss_pred             EecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        166 VFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       166 ~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      ++++|.++...+.      .+..+++|++|+
T Consensus       222 ~Ls~n~l~~~~~~------~~~~l~~L~~L~  246 (330)
T 1xku_A          222 GLSFNSISAVDNG------SLANTPHLRELH  246 (330)
T ss_dssp             ECCSSCCCEECTT------TGGGSTTCCEEE
T ss_pred             ECCCCcCceeChh------hccCCCCCCEEE
Confidence            9999988877643      456677777766

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.59  E-value=1.4e-14  Score=124.08  Aligned_cols=145  Identities=23%  Similarity=0.229  Sum_probs=98.1

Q ss_pred             CCceEEEccCccc---cccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC---------ccc
Q psy14661         45 SEAKEVGLQMQFI---EKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG---------LEP  110 (202)
Q Consensus        45 ~~l~~L~l~~~~i---~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~---------~~~  110 (202)
                      ++++.|++++|.+   +.+|..+..+++|+.|++++|.++.+  ..+..+++|++|++++|.++.++.         ...
T Consensus       454 ~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~  533 (680)
T 1ziw_A          454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK  533 (680)
T ss_dssp             TTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTT
T ss_pred             cccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhc
Confidence            3444444444442   23445566777777888877777776  447777788888888887765421         133


Q ss_pred             ccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHH-
Q psy14661        111 LAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKK-  187 (202)
Q Consensus       111 ~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~-  187 (202)
                      .+++|+.|++++|.++.+|  .|..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++...+.      .+. 
T Consensus       534 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~  606 (680)
T 1ziw_A          534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVEKK------VFGP  606 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCCCBCCHH------HHHH
T ss_pred             CCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCH-hHhCCCCCCCEEECCCCcCCccChh------Hhcc
Confidence            4467888888888888776  37788888888888888887654 4567778888888888888877632      333 


Q ss_pred             hCCCccccc
Q psy14661        188 RLPNLKKLD  196 (202)
Q Consensus       188 ~l~~L~~L~  196 (202)
                      .+++|+.++
T Consensus       607 ~~~~L~~l~  615 (680)
T 1ziw_A          607 AFRNLTELD  615 (680)
T ss_dssp             HHTTCSEEE
T ss_pred             cccccCEEE
Confidence            566666655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.59  E-value=7.4e-15  Score=123.16  Aligned_cols=130  Identities=18%  Similarity=0.175  Sum_probs=51.8

Q ss_pred             CceEEEccCccccccchhhccCCCCCEEECCCCCCcCc---cCCCCCCCCcEEEccCcccccc-CCcccccCCCcEEEcc
Q psy14661         46 EAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEELWVS  121 (202)
Q Consensus        46 ~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~---~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~l~  121 (202)
                      +++.|++++|.+..++..+..+++|+.|++++|.+...   ..+..+++|++|++++|.+... +.....+++|+.|+++
T Consensus       374 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  453 (570)
T 2z63_A          374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA  453 (570)
T ss_dssp             CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred             ccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECc
Confidence            34444444444333333333444444444444443332   1233444444444444443321 1222222444444444


Q ss_pred             cccCC--CCC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661        122 YNYIE--KTK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       122 ~n~l~--~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      +|.++  .+| .+..+++|+.|++++|.++++. +..+..+++|++|++++|.++..+
T Consensus       454 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~  510 (570)
T 2z63_A          454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMASNQLKSVP  510 (570)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCccccchhhhhcccCCCEEECCCCccccCC-hhhhhcccCCCEEeCCCCcCCCCC
Confidence            44443  122 2344444444444444444321 123444444444444444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.59  E-value=2.6e-15  Score=117.69  Aligned_cols=146  Identities=22%  Similarity=0.261  Sum_probs=104.0

Q ss_pred             CCCCCceEEEccCccccccchh-----------------hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccc
Q psy14661         42 IPISEAKEVGLQMQFIEKMDSS-----------------LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNI  102 (202)
Q Consensus        42 ~~~~~l~~L~l~~~~i~~l~~~-----------------l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l  102 (202)
                      ..+++|+.|++++|.+..++..                 ...+++|+.|++++|.++.+  ..+..+++|++|++++|.+
T Consensus        77 ~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (317)
T 3o53_A           77 ESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (317)
T ss_dssp             TTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred             hhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence            4566788888888876655421                 12345677777777777766  4666778888888888888


Q ss_pred             cccC--CcccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchh
Q psy14661        103 KSFA--GLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPL  180 (202)
Q Consensus       103 ~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~  180 (202)
                      +..+  .+...+++|+.|++++|.++.++....+++|+.|++++|.+++++.  .+..+++|+.|++++|.++..+.   
T Consensus       157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~L~L~~N~l~~l~~---  231 (317)
T 3o53_A          157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEK---  231 (317)
T ss_dssp             CEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEECT---
T ss_pred             CcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchh--hhcccCcccEEECcCCcccchhh---
Confidence            7644  2333457888888888888877765567888888888888887654  47778888888888888887642   


Q ss_pred             hHHHHHHhCCCccccc
Q psy14661        181 YKSEVKKRLPNLKKLD  196 (202)
Q Consensus       181 ~~~~~~~~l~~L~~L~  196 (202)
                          .+..+++|+.|+
T Consensus       232 ----~~~~l~~L~~L~  243 (317)
T 3o53_A          232 ----ALRFSQNLEHFD  243 (317)
T ss_dssp             ----TCCCCTTCCEEE
T ss_pred             ----HhhcCCCCCEEE
Confidence                346677787765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.57  E-value=2.5e-14  Score=117.53  Aligned_cols=119  Identities=20%  Similarity=0.192  Sum_probs=88.4

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY  122 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  122 (202)
                      .+++++.|++++|.+..+| .+..+++|+.|++++|.+++++ +..+++|++|++++|.++.++  ...+++|+.|++++
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT  115 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred             HcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence            3567888888888888776 4888888888888888888874 777888888888888887764  33447888888888


Q ss_pred             ccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCC
Q psy14661        123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGN  170 (202)
Q Consensus       123 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n  170 (202)
                      |.++.++ ++.+++|+.|++++|.+++++    ++.+++|+++++++|
T Consensus       116 N~l~~l~-~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          116 NKLTKLD-VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLN  158 (457)
T ss_dssp             SCCSCCC-CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTC
T ss_pred             CcCCeec-CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCC
Confidence            8887765 677778888888888777642    344555555555555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.57  E-value=9.8e-15  Score=124.50  Aligned_cols=146  Identities=14%  Similarity=0.092  Sum_probs=86.2

Q ss_pred             CCceEEEccCccccccch--hhccCCCCCEEECCCCCCc-CccCCCCCCCCcEEEccCccccccCCcccccCC-CcEEEc
Q psy14661         45 SEAKEVGLQMQFIEKMDS--SLAVLTNCEKLSLSTNMIE-KINGLSGLKKLKVLSLARNNIKSFAGLEPLAET-LEELWV  120 (202)
Q Consensus        45 ~~l~~L~l~~~~i~~l~~--~l~~l~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l  120 (202)
                      ++|+.|++++|.+..+|.  .+..+++|+.|++++|.++ .++.+..+++|++|++++|.++.+|.....+++ |+.|++
T Consensus       305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~L  384 (636)
T 4eco_A          305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF  384 (636)
T ss_dssp             GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEEC
T ss_pred             CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEc
Confidence            445555555555555555  4555555666666655555 234555555566666666655555543444455 777777


Q ss_pred             ccccCCCCCC-CCCC--CCccEEEccCCcccCccccccCC-------CCCcceEEEecCCcCCCCCCchhhHHHHHHhCC
Q psy14661        121 SYNYIEKTKG-IGVM--RKLKVLYMSNNLVKEWAEFVKLG-------ECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLP  190 (202)
Q Consensus       121 ~~n~l~~~~~-~~~~--~~L~~L~l~~n~l~~~~~~~~~~-------~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~  190 (202)
                      ++|.++.+|. +...  ++|+.|++++|.+.+. .+..+.       .+++|++|++++|.++..++.      .+..++
T Consensus       385 s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~------~~~~l~  457 (636)
T 4eco_A          385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV-DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE------LFSTGS  457 (636)
T ss_dssp             CSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTT-TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH------HHHTTC
T ss_pred             cCCcCcccchhhhhcccCccCEEECcCCcCCCc-chhhhcccccccccCCCCCEEECcCCccCcCCHH------HHccCC
Confidence            7777766663 3332  3677777777776652 223344       566788888888888766532      455677


Q ss_pred             CcccccC
Q psy14661        191 NLKKLDG  197 (202)
Q Consensus       191 ~L~~L~~  197 (202)
                      +|++|+-
T Consensus       458 ~L~~L~L  464 (636)
T 4eco_A          458 PLSSINL  464 (636)
T ss_dssp             CCSEEEC
T ss_pred             CCCEEEC
Confidence            7777653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.57  E-value=4.8e-15  Score=123.22  Aligned_cols=128  Identities=16%  Similarity=0.183  Sum_probs=105.4

Q ss_pred             CCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCCcccccCCCcEEE
Q psy14661         43 PISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELW  119 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~  119 (202)
                      .+++++.|++++|.+..+++ .+..+++|++|++++|.++.+  ..|..+++|++|++++|.++.+|..  .+++|++|+
T Consensus        19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD   96 (520)
T ss_dssp             CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred             ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence            34789999999999888774 588999999999999999987  5788999999999999999888755  458999999


Q ss_pred             cccccCCCC--C-CCCCCCCccEEEccCCcccCccccccCCCCCcc--eEEEecCCcC--CCCC
Q psy14661        120 VSYNYIEKT--K-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSL--IDLVFCGNPL--VEGM  176 (202)
Q Consensus       120 l~~n~l~~~--~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~l~l~~n~~--~~~~  176 (202)
                      +++|.++.+  | .++.+++|++|++++|.+.+.    .+..+++|  +.+++.+|.+  ....
T Consensus        97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l~~~~~~  156 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETYGEKED  156 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred             ccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEeecccccccccc
Confidence            999999874  4 588899999999999988762    24455566  9999999988  4443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.57  E-value=3.1e-15  Score=116.94  Aligned_cols=149  Identities=21%  Similarity=0.127  Sum_probs=112.2

Q ss_pred             CCCCceEEEccCcccc-ccchhh--ccCCCCCEEECCCCCCcCc-cCCCCC-----CCCcEEEccCccccccC-Cccccc
Q psy14661         43 PISEAKEVGLQMQFIE-KMDSSL--AVLTNCEKLSLSTNMIEKI-NGLSGL-----KKLKVLSLARNNIKSFA-GLEPLA  112 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~-~l~~~l--~~l~~L~~L~l~~n~i~~~-~~~~~l-----~~L~~L~l~~n~l~~~~-~~~~~~  112 (202)
                      .+++++.|++++|.+. .+|..+  ..+++|+.|++++|.+++. ..+..+     ++|++|++++|.++.++ ..+..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            4788999999999976 577765  8899999999999999987 334444     89999999999999877 555566


Q ss_pred             CCCcEEEcccccCCCC---C-C--CCCCCCccEEEccCCcccCcccc--ccCCCCCcceEEEecCCcCCCCCCchhhHHH
Q psy14661        113 ETLEELWVSYNYIEKT---K-G--IGVMRKLKVLYMSNNLVKEWAEF--VKLGECPSLIDLVFCGNPLVEGMDDPLYKSE  184 (202)
Q Consensus       113 ~~L~~L~l~~n~l~~~---~-~--~~~~~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~  184 (202)
                      ++|+.|++++|.+.+.   + .  +..+++|+.|++++|.+++++..  ..+..+++|++|++++|.++...+.+     
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----  247 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP-----  247 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS-----
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh-----
Confidence            8999999999987642   2 2  37788899999999988854432  23346678888888888887754211     


Q ss_pred             HHHhCCCccccc
Q psy14661        185 VKKRLPNLKKLD  196 (202)
Q Consensus       185 ~~~~l~~L~~L~  196 (202)
                      .+..+++|++|+
T Consensus       248 ~~~~l~~L~~L~  259 (312)
T 1wwl_A          248 SCDWPSQLNSLN  259 (312)
T ss_dssp             CCCCCTTCCEEE
T ss_pred             hhhhcCCCCEEE
Confidence            233456676665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.57  E-value=1.4e-14  Score=120.48  Aligned_cols=133  Identities=17%  Similarity=0.174  Sum_probs=69.8

Q ss_pred             CCCCceEEEccCccccc-cchhhccCCCCCEEECCCCCCcCc----cCCCCCCCCcEEEccCccccc-cCC-ccccc---
Q psy14661         43 PISEAKEVGLQMQFIEK-MDSSLAVLTNCEKLSLSTNMIEKI----NGLSGLKKLKVLSLARNNIKS-FAG-LEPLA---  112 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~-l~~~l~~l~~L~~L~l~~n~i~~~----~~~~~l~~L~~L~l~~n~l~~-~~~-~~~~~---  112 (202)
                      .+++++.|++++|.+.. +|..+..+++|+.|++++|.++.+    ..+..+++|++|++++|.++. ++. ....+   
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            34445555555555433 333344555555555555555432    224444445555555544443 331 11112   


Q ss_pred             -------------------CCCcEEEcccccCCCCC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcC
Q psy14661        113 -------------------ETLEELWVSYNYIEKTK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL  172 (202)
Q Consensus       113 -------------------~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~  172 (202)
                                         ++|+.|++++|.++.+| .+..+++|+.|++++|.+++++. ..+..+++|+++++++|++
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD-GIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred             CEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCH-HHhccCCcccEEECcCCCC
Confidence                               35666666666666655 24466666666666666665543 2355666666777777766


Q ss_pred             CCCC
Q psy14661        173 VEGM  176 (202)
Q Consensus       173 ~~~~  176 (202)
                      .+.+
T Consensus       481 ~c~c  484 (520)
T 2z7x_B          481 DCSC  484 (520)
T ss_dssp             CCCH
T ss_pred             cccC
Confidence            6654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.57  E-value=1.2e-14  Score=126.39  Aligned_cols=77  Identities=23%  Similarity=0.227  Sum_probs=45.7

Q ss_pred             CCCcEEEcccccCCC-CC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCC
Q psy14661        113 ETLEELWVSYNYIEK-TK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLP  190 (202)
Q Consensus       113 ~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~  190 (202)
                      ++|+.|++++|.+++ +| .++.++.|+.|++++|.+++. .+..++.+++|+.|++++|.++...|.      .+..++
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~l~~L~~L~~LdLs~N~l~g~ip~------~l~~l~  704 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS-IPDEVGDLRGLNILDLSSNKLDGRIPQ------AMSALT  704 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEECCCG------GGGGCC
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC-CChHHhCCCCCCEEECCCCcccCcCCh------HHhCCC
Confidence            345566666666653 44 356666666666666666541 234566666666666666666655543      456666


Q ss_pred             Cccccc
Q psy14661        191 NLKKLD  196 (202)
Q Consensus       191 ~L~~L~  196 (202)
                      +|++||
T Consensus       705 ~L~~L~  710 (768)
T 3rgz_A          705 MLTEID  710 (768)
T ss_dssp             CCSEEE
T ss_pred             CCCEEE
Confidence            666655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=3.3e-14  Score=103.76  Aligned_cols=109  Identities=17%  Similarity=0.124  Sum_probs=97.4

Q ss_pred             CCCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcE
Q psy14661         41 GIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEE  117 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~  117 (202)
                      ...+.+++.|++++|.+..+|..+..+++|+.|++++|.|+.+  ..|..+++|++|++++|.++.++ ..+..+++|+.
T Consensus        27 ~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~  106 (193)
T 2wfh_A           27 KGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL  106 (193)
T ss_dssp             SCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             CCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence            3456789999999999999998899999999999999999998  56999999999999999999877 34555689999


Q ss_pred             EEcccccCCCCC--CCCCCCCccEEEccCCcccC
Q psy14661        118 LWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKE  149 (202)
Q Consensus       118 L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~  149 (202)
                      |++++|.++.++  .+..+++|+.|++++|.+..
T Consensus       107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          107 LSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            999999999987  38889999999999998865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.56  E-value=1.6e-14  Score=121.30  Aligned_cols=125  Identities=18%  Similarity=0.233  Sum_probs=68.3

Q ss_pred             CCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEc
Q psy14661         44 ISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWV  120 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l  120 (202)
                      +++++.|++++|.+..+++ .+..+++|++|++++|.++.+  ..|..+++|++|++++|.++.+|..  .+++|+.|++
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL  128 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence            3456666666666555553 355666666666666666555  3455566666666666666555533  2356666666


Q ss_pred             ccccCCCCC---CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcC
Q psy14661        121 SYNYIEKTK---GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL  172 (202)
Q Consensus       121 ~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~  172 (202)
                      ++|.++.++   .++.+++|++|++++|.+... .+..+..+ +|+.+++++|.+
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L-~L~~L~L~~n~l  181 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-DLLPVAHL-HLSCILLDLVSY  181 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-TTGGGTTS-CEEEEEEEESSC
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccC-chhhhhhc-eeeEEEeecccc
Confidence            666665543   355556666666666655542 21222222 336666666655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.56  E-value=3.7e-14  Score=119.15  Aligned_cols=133  Identities=16%  Similarity=0.126  Sum_probs=77.1

Q ss_pred             CCCCceEEEccCccccc-cchhhccCCCCCEEECCCCCCcCc----cCCCCCCCCcEEEccCccccc-cCC-ccccc---
Q psy14661         43 PISEAKEVGLQMQFIEK-MDSSLAVLTNCEKLSLSTNMIEKI----NGLSGLKKLKVLSLARNNIKS-FAG-LEPLA---  112 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~-l~~~l~~l~~L~~L~l~~n~i~~~----~~~~~l~~L~~L~l~~n~l~~-~~~-~~~~~---  112 (202)
                      .+++++.|++++|.+.. +|..+..+++|+.|++++|.++.+    ..+..+++|++|++++|.++. ++. ....+   
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            45566666776666554 444466666666666666666654    235566666666666666654 331 12222   


Q ss_pred             -------------------CCCcEEEcccccCCCCC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcC
Q psy14661        113 -------------------ETLEELWVSYNYIEKTK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL  172 (202)
Q Consensus       113 -------------------~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~  172 (202)
                                         ++|+.|++++|.++.+| .+..+++|+.|++++|.+++++. ..+..+++|+.+++++|++
T Consensus       431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD-GVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCT-TSTTTCTTCCCEECCSCCB
T ss_pred             CEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCH-HHHhcCCCCCEEEecCCCc
Confidence                               35566666666666555 34456666666666666665543 1355666666666666666


Q ss_pred             CCCC
Q psy14661        173 VEGM  176 (202)
Q Consensus       173 ~~~~  176 (202)
                      .+.+
T Consensus       510 ~c~c  513 (562)
T 3a79_B          510 DCTC  513 (562)
T ss_dssp             CCCH
T ss_pred             CCCc
Confidence            6554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.56  E-value=4e-14  Score=119.72  Aligned_cols=136  Identities=22%  Similarity=0.141  Sum_probs=70.4

Q ss_pred             CCCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCc------------------
Q psy14661         41 GIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARN------------------  100 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n------------------  100 (202)
                      ...+++++.|++++|.+..+|..+..+++|+.|++++|.++.+  ..+..+++|++|++++|                  
T Consensus       274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  353 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR  353 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred             hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence            3455667777777777666666666666777777776666654  33444444444444444                  


Q ss_pred             -------ccccc---CCcccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEec
Q psy14661        101 -------NIKSF---AGLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFC  168 (202)
Q Consensus       101 -------~l~~~---~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~  168 (202)
                             .++..   +.....+++|+.|++++|.++.++  .+..+++|+.|++++|.+........+..+++|+.|+++
T Consensus       354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  433 (606)
T 3t6q_A          354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS  433 (606)
T ss_dssp             EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred             EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence                   44332   112222344555555555444332  244455555555555554443222234455555555555


Q ss_pred             CCcCCCCC
Q psy14661        169 GNPLVEGM  176 (202)
Q Consensus       169 ~n~~~~~~  176 (202)
                      +|.+....
T Consensus       434 ~n~l~~~~  441 (606)
T 3t6q_A          434 HSLLDISS  441 (606)
T ss_dssp             TCCCBTTC
T ss_pred             CCccCCcC
Confidence            55554443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.56  E-value=1.5e-14  Score=125.76  Aligned_cols=147  Identities=22%  Similarity=0.188  Sum_probs=111.0

Q ss_pred             CCCceEEEccCcccc-ccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCcccc-ccCCcccccCCCcEEE
Q psy14661         44 ISEAKEVGLQMQFIE-KMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIK-SFAGLEPLAETLEELW  119 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~-~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~L~~L~  119 (202)
                      +++++.|++++|.+. .+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.++ .++.....+++|+.|+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            556888888888855 5677788888888888888888865  66778888888888888887 4555555557888888


Q ss_pred             cccccCCC-CC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661        120 VSYNYIEK-TK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG  197 (202)
Q Consensus       120 l~~n~l~~-~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~  197 (202)
                      +++|.+++ +| .+..+++|+.|++++|.+++. .+.+++.+++|++|++++|.++...|.      .++.+++|+.|+-
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~------~l~~l~~L~~L~L  545 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPA------ELGDCRSLIWLDL  545 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEEECCG------GGGGCTTCCEEEC
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCc-CChHHhcCCCCCEEECCCCcccCcCCH------HHcCCCCCCEEEC
Confidence            88888874 45 477788888888888888752 334677788888888888888765543      5677888877764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.56  E-value=1.7e-14  Score=113.56  Aligned_cols=148  Identities=23%  Similarity=0.239  Sum_probs=78.0

Q ss_pred             CCCCCCceEEEccCcccccc-chhhccCCCCCEEECCCCCCcCc-cC----------------------CCCCCCCcEEE
Q psy14661         41 GIPISEAKEVGLQMQFIEKM-DSSLAVLTNCEKLSLSTNMIEKI-NG----------------------LSGLKKLKVLS   96 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~l-~~~l~~l~~L~~L~l~~n~i~~~-~~----------------------~~~l~~L~~L~   96 (202)
                      ...+++|+.|++++|.+..+ |..+..+++|++|++++|.++.+ ..                      +..+++|++|+
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  153 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE  153 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence            34556667777776666655 33466666666666666665544 21                      33344444444


Q ss_pred             ccCccccc--c-CCccccc--------------------CCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCcc
Q psy14661         97 LARNNIKS--F-AGLEPLA--------------------ETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWA  151 (202)
Q Consensus        97 l~~n~l~~--~-~~~~~~~--------------------~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~  151 (202)
                      +++|.++.  . +.....+                    ++|+.|++++|.++.++  .+..+++|+.|++++|.+.+++
T Consensus       154 l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~  233 (332)
T 2ft3_A          154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE  233 (332)
T ss_dssp             CCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred             CCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence            44444421  0 0111000                    23444444444444433  2455566666666666666543


Q ss_pred             ccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        152 EFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       152 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      . ..+..+++|+.|++++|.++..+.       .+..+++|++|+
T Consensus       234 ~-~~~~~l~~L~~L~L~~N~l~~lp~-------~l~~l~~L~~L~  270 (332)
T 2ft3_A          234 N-GSLSFLPTLRELHLDNNKLSRVPA-------GLPDLKLLQVVY  270 (332)
T ss_dssp             T-TGGGGCTTCCEEECCSSCCCBCCT-------TGGGCTTCCEEE
T ss_pred             h-hHhhCCCCCCEEECCCCcCeecCh-------hhhcCccCCEEE
Confidence            2 345566677777777777765542       245566666655

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.55  E-value=7.3e-15  Score=121.63  Aligned_cols=147  Identities=22%  Similarity=0.252  Sum_probs=99.6

Q ss_pred             CCCCCCceEEEccCccccccchh-----------------hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCcc
Q psy14661         41 GIPISEAKEVGLQMQFIEKMDSS-----------------LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNN  101 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~l~~~-----------------l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~  101 (202)
                      ...+++|+.|++++|.+..++..                 ...+++|+.|++++|.++.+  ..+..+++|++|++++|.
T Consensus        76 l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  155 (487)
T 3oja_A           76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE  155 (487)
T ss_dssp             CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred             cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC
Confidence            34567788888888876665531                 12245667777777777765  456667778888888887


Q ss_pred             ccccC-C-cccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCch
Q psy14661        102 IKSFA-G-LEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDP  179 (202)
Q Consensus       102 l~~~~-~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~  179 (202)
                      ++..+ . +...+++|+.|++++|.+++++....+++|+.|++++|.+++++.  .+..+++|+.|++++|.++..++  
T Consensus       156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~lp~--  231 (487)
T 3oja_A          156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEK--  231 (487)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEECT--
T ss_pred             CCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCCcCcccch--
Confidence            77533 2 332457788888888887777665567788888888888877543  46677888888888888876542  


Q ss_pred             hhHHHHHHhCCCccccc
Q psy14661        180 LYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       180 ~~~~~~~~~l~~L~~L~  196 (202)
                           .+..+++|+.|+
T Consensus       232 -----~l~~l~~L~~L~  243 (487)
T 3oja_A          232 -----ALRFSQNLEHFD  243 (487)
T ss_dssp             -----TCCCCTTCCEEE
T ss_pred             -----hhccCCCCCEEE
Confidence                 245566666654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=7.2e-14  Score=122.57  Aligned_cols=149  Identities=12%  Similarity=0.040  Sum_probs=100.6

Q ss_pred             CCCCceEEEccCccccccch--hhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCC-CcEEE
Q psy14661         43 PISEAKEVGLQMQFIEKMDS--SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAET-LEELW  119 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~--~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~  119 (202)
                      .+++|+.|++++|.+..+|.  .+..+++|+.|++++|.++.++.+..+++|++|++++|.++.+|.....+++ |+.|+
T Consensus       546 ~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~  625 (876)
T 4ecn_A          546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG  625 (876)
T ss_dssp             TTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEE
T ss_pred             ccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEE
Confidence            45567788888887777777  6777888888888888877657777777888888888887776654444466 88888


Q ss_pred             cccccCCCCCC-CCCCC--CccEEEccCCcccCccc-c-ccCC--CCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCc
Q psy14661        120 VSYNYIEKTKG-IGVMR--KLKVLYMSNNLVKEWAE-F-VKLG--ECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNL  192 (202)
Q Consensus       120 l~~n~l~~~~~-~~~~~--~L~~L~l~~n~l~~~~~-~-~~~~--~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L  192 (202)
                      +++|.++.+|. +....  +|+.|++++|.+.+... + ..+.  .+++|+.|++++|.+...+..      .+..+++|
T Consensus       626 Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~------~~~~l~~L  699 (876)
T 4ecn_A          626 FSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE------LFATGSPI  699 (876)
T ss_dssp             CCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHH------HHHTTCCC
T ss_pred             CcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHH------HHccCCCC
Confidence            88888777763 44333  47777777777755211 0 0111  334778888888877765421      44567777


Q ss_pred             ccccC
Q psy14661        193 KKLDG  197 (202)
Q Consensus       193 ~~L~~  197 (202)
                      +.|+-
T Consensus       700 ~~L~L  704 (876)
T 4ecn_A          700 STIIL  704 (876)
T ss_dssp             SEEEC
T ss_pred             CEEEC
Confidence            76653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=9.1e-15  Score=128.22  Aligned_cols=128  Identities=19%  Similarity=0.194  Sum_probs=66.6

Q ss_pred             CCCCceEEEccCccccc------------------cchhhc--cCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCc
Q psy14661         43 PISEAKEVGLQMQFIEK------------------MDSSLA--VLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARN  100 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~------------------l~~~l~--~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n  100 (202)
                      .+++|+.|++++|.+..                  +|..+.  .+++|+.|++++|.+.+.  ..+..+++|++|++++|
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            45556666666666554                  555544  666666666666654443  44555555666666555


Q ss_pred             c-ccc--cCCcccc-------cCCCcEEEcccccCCCCCC---CCCCCCccEEEccCCcccCccccccCCCCCcceEEEe
Q psy14661        101 N-IKS--FAGLEPL-------AETLEELWVSYNYIEKTKG---IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVF  167 (202)
Q Consensus       101 ~-l~~--~~~~~~~-------~~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l  167 (202)
                      + ++.  +|.....       +++|+.|++++|.++.+|.   ++.+++|+.|++++|.++.++   .++.+++|+.|++
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~L  602 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKL  602 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEEC
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEEC
Confidence            4 442  3321111       1255555555555555543   445555555555555555332   3445555555555


Q ss_pred             cCCcCC
Q psy14661        168 CGNPLV  173 (202)
Q Consensus       168 ~~n~~~  173 (202)
                      ++|.+.
T Consensus       603 s~N~l~  608 (876)
T 4ecn_A          603 DYNQIE  608 (876)
T ss_dssp             CSSCCS
T ss_pred             cCCccc
Confidence            555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.52  E-value=1.2e-13  Score=116.09  Aligned_cols=134  Identities=17%  Similarity=0.145  Sum_probs=73.5

Q ss_pred             CCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCc---------------
Q psy14661         44 ISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGL---------------  108 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------  108 (202)
                      +++++.|++++|.+..+|   ..+++|+.|++++|.++.++.+..  +|++|++++|.++.+|..               
T Consensus        79 ~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A           79 PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPELPALLEYINADNNQLT  153 (571)
T ss_dssp             CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCCcCccccEEeCCCCccC
Confidence            456888888888877777   345677777777777766533332  555555555555544430               


Q ss_pred             --ccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcc-------eEEEecCCcCCCCCCch
Q psy14661        109 --EPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSL-------IDLVFCGNPLVEGMDDP  179 (202)
Q Consensus       109 --~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L-------~~l~l~~n~~~~~~~~~  179 (202)
                        ...+++|+.|++++|.++.+|.+.  ++|+.|++++|.++.++.   +..  +|       +.|++++|.++..+.  
T Consensus       154 ~lp~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~--  224 (571)
T 3cvr_A          154 MLPELPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPA---VPV--RNHHSEETEIFFRCRENRITHIPE--  224 (571)
T ss_dssp             CCCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCC---CC----------CCEEEECCSSCCCCCCG--
T ss_pred             cCCCcCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhh---HHH--hhhcccccceEEecCCCcceecCH--
Confidence              001234444445544444444422  455566666665555433   222  44       677777777766542  


Q ss_pred             hhHHHHHHhCCCccccc
Q psy14661        180 LYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       180 ~~~~~~~~~l~~L~~L~  196 (202)
                           .+..+++|+.|+
T Consensus       225 -----~l~~l~~L~~L~  236 (571)
T 3cvr_A          225 -----NILSLDPTCTII  236 (571)
T ss_dssp             -----GGGGSCTTEEEE
T ss_pred             -----HHhcCCCCCEEE
Confidence                 234477777655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=3.1e-14  Score=123.07  Aligned_cols=114  Identities=24%  Similarity=0.182  Sum_probs=87.6

Q ss_pred             chhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccCCCCC-CCCCCCCcc
Q psy14661         61 DSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTK-GIGVMRKLK  138 (202)
Q Consensus        61 ~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~L~  138 (202)
                      +..+..++.|+.|++++|.+..+ ..+..+++|++|++++|.++.+|..+..+++|+.|+|++|.++.+| .++.+++|+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK  296 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence            44477788888888888888877 5666788888888888888877765566678888888888888887 577888888


Q ss_pred             EEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661        139 VLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       139 ~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      .|++++|.++.++.  .++.+++|+.|++++|.++...
T Consensus       297 ~L~L~~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~  332 (727)
T 4b8c_D          297 YFYFFDNMVTTLPW--EFGNLCNLQFLGVEGNPLEKQF  332 (727)
T ss_dssp             EEECCSSCCCCCCS--STTSCTTCCCEECTTSCCCSHH
T ss_pred             EEECCCCCCCccCh--hhhcCCCccEEeCCCCccCCCC
Confidence            88888888887654  5788888888888888887654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.51  E-value=8.3e-14  Score=118.77  Aligned_cols=133  Identities=19%  Similarity=0.120  Sum_probs=92.6

Q ss_pred             CCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc-cC-CCC-------CCCCcEEEccCccccccCCccc--
Q psy14661         43 PISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI-NG-LSG-------LKKLKVLSLARNNIKSFAGLEP--  110 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~-~~-~~~-------l~~L~~L~l~~n~l~~~~~~~~--  110 (202)
                      ...+++.|++++|.+..+|.. +..+++|+.|++++|.++.+ .. +..       +++|++|++++|.++.++....  
T Consensus       431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~  510 (636)
T 4eco_A          431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT  510 (636)
T ss_dssp             CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTT
T ss_pred             cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhc
Confidence            344688888888887777766 55578888888888888765 22 222       2278888888888887775443  


Q ss_pred             ccCCCcEEEcccccCCCCC-CCCCCCCccEEEcc------CCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661        111 LAETLEELWVSYNYIEKTK-GIGVMRKLKVLYMS------NNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       111 ~~~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~------~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      .+++|+.|++++|.++.+| .+..+++|+.|+++      +|.+... .+..+..+++|+.|++++|.+...+
T Consensus       511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~ip  582 (636)
T 4eco_A          511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE-WPEGITLCPSLTQLQIGSNDIRKVN  582 (636)
T ss_dssp             TCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCCCBCC
T ss_pred             cCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCccccc-ChHHHhcCCCCCEEECCCCcCCccC
Confidence            5578888888888888776 46677888888884      3444431 2246667788888888888886654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.50  E-value=2.5e-13  Score=111.51  Aligned_cols=104  Identities=20%  Similarity=0.239  Sum_probs=64.8

Q ss_pred             CCCceEEEccCccccccchhhc----------------c-CCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccC
Q psy14661         44 ISEAKEVGLQMQFIEKMDSSLA----------------V-LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFA  106 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~~l~----------------~-l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~  106 (202)
                      +++++.|++++|.+..+|..+.                . .++|++|++++|.++.++.+..+++|++|++++|.++.++
T Consensus        90 ~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp  169 (454)
T 1jl5_A           90 PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP  169 (454)
T ss_dssp             CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCC
T ss_pred             cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccC
Confidence            4456666666666555543210                1 1466666666666666655666777777777777776655


Q ss_pred             CcccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCc
Q psy14661        107 GLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEW  150 (202)
Q Consensus       107 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~  150 (202)
                      ...   ++|++|++++|.++.+|.++.+++|+.|++++|.++++
T Consensus       170 ~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l  210 (454)
T 1jl5_A          170 DLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL  210 (454)
T ss_dssp             CCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             CCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcC
Confidence            322   46777777777777666666666677666666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=3.2e-13  Score=96.96  Aligned_cols=109  Identities=23%  Similarity=0.278  Sum_probs=95.2

Q ss_pred             CCCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCc
Q psy14661         41 GIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLE  116 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~  116 (202)
                      ...+++++.|++++|.+..++.. +..+++|+.|++++|.++.+  ..+..+++|++|++++|.++.++. ....+++|+
T Consensus        24 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  103 (177)
T 2o6r_A           24 TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK  103 (177)
T ss_dssp             TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccC
Confidence            34567899999999999888875 78999999999999999988  447899999999999999998774 345568999


Q ss_pred             EEEcccccCCCCCC--CCCCCCccEEEccCCcccC
Q psy14661        117 ELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKE  149 (202)
Q Consensus       117 ~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~  149 (202)
                      .|++++|.++.++.  +..+++|+.|++++|.+..
T Consensus       104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            99999999999873  6789999999999999875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.50  E-value=1.8e-13  Score=99.69  Aligned_cols=109  Identities=21%  Similarity=0.202  Sum_probs=95.5

Q ss_pred             CCCCCceEEEccCccccccchh--hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCc
Q psy14661         42 IPISEAKEVGLQMQFIEKMDSS--LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLE  116 (202)
Q Consensus        42 ~~~~~l~~L~l~~~~i~~l~~~--l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~  116 (202)
                      ..+.+++.|++++|.+..+++.  +..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++. .+..+++|+
T Consensus        26 ~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  105 (192)
T 1w8a_A           26 DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred             CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence            3455899999999999998874  89999999999999999998  678999999999999999998763 344558999


Q ss_pred             EEEcccccCCCC-C-CCCCCCCccEEEccCCcccCc
Q psy14661        117 ELWVSYNYIEKT-K-GIGVMRKLKVLYMSNNLVKEW  150 (202)
Q Consensus       117 ~L~l~~n~l~~~-~-~~~~~~~L~~L~l~~n~l~~~  150 (202)
                      .|++++|.++.+ | .+..+++|+.|++++|.+...
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            999999999986 4 588999999999999998763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.49  E-value=4.8e-13  Score=109.90  Aligned_cols=81  Identities=19%  Similarity=0.213  Sum_probs=50.6

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY  122 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  122 (202)
                      .+++++.|++++|.+..+|  +..+++|++|++++|.+++++ +..+++|++|++++|.++.++  ...+++|+.|++++
T Consensus        62 ~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~  136 (457)
T 3bz5_A           62 KLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCAR  136 (457)
T ss_dssp             GCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTT
T ss_pred             ccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCC
Confidence            4566777777777766664  666677777777777766653 556666666666666666543  22335566666666


Q ss_pred             ccCCCC
Q psy14661        123 NYIEKT  128 (202)
Q Consensus       123 n~l~~~  128 (202)
                      |.++.+
T Consensus       137 N~l~~l  142 (457)
T 3bz5_A          137 NTLTEI  142 (457)
T ss_dssp             SCCSCC
T ss_pred             Ccccee
Confidence            555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.49  E-value=6.7e-14  Score=109.25  Aligned_cols=133  Identities=19%  Similarity=0.198  Sum_probs=107.1

Q ss_pred             hhcCCCCCCceEEEccCccccc---cchh--hccCCCCCEEECCCCCCcCcc-----CCCCCCCCcEEEccCcccccc-C
Q psy14661         38 EENGIPISEAKEVGLQMQFIEK---MDSS--LAVLTNCEKLSLSTNMIEKIN-----GLSGLKKLKVLSLARNNIKSF-A  106 (202)
Q Consensus        38 ~~~~~~~~~l~~L~l~~~~i~~---l~~~--l~~l~~L~~L~l~~n~i~~~~-----~~~~l~~L~~L~l~~n~l~~~-~  106 (202)
                      +.....+++|+.|++++|.+..   ++..  +..+++|++|++++|.++.++     -+..+++|++|++++|.++.. |
T Consensus       162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p  241 (310)
T 4glp_A          162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN  241 (310)
T ss_dssp             TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred             HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence            3344568889999999998543   4333  468999999999999998762     246789999999999999876 4


Q ss_pred             Cccccc---CCCcEEEcccccCCCCCC-CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCC
Q psy14661        107 GLEPLA---ETLEELWVSYNYIEKTKG-IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEG  175 (202)
Q Consensus       107 ~~~~~~---~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~  175 (202)
                      .....+   ++|+.|++++|.++.+|. +  .++|+.|++++|.+++++.   +..+++|+.|++++|++++.
T Consensus       242 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          242 PSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRLNRAPQ---PDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             SCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCCCSCCC---TTSCCCCSCEECSSTTTSCC
T ss_pred             hhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcCCCCch---hhhCCCccEEECcCCCCCCC
Confidence            333333   699999999999999884 4  3799999999999998754   57789999999999999764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=9.8e-13  Score=93.99  Aligned_cols=105  Identities=19%  Similarity=0.219  Sum_probs=51.9

Q ss_pred             eEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccC
Q psy14661         48 KEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYI  125 (202)
Q Consensus        48 ~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l  125 (202)
                      +.+++++|.+..+|..+  .++++.|++++|.++.+  ..|..+++|++|++++|.++.++..                 
T Consensus        12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-----------------   72 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG-----------------   72 (170)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-----------------
T ss_pred             CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChh-----------------
Confidence            44555555555555433  24455555555555544  2344444444444444444443321                 


Q ss_pred             CCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661        126 EKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       126 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                          .|..+++|+.|++++|.++.++. ..+..+++|++|++.+|++.+.+
T Consensus        73 ----~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           73 ----VFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             ----TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCTTB
T ss_pred             ----hccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCCCCCc
Confidence                13455555555555555554432 23455555555555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.47  E-value=6.3e-13  Score=95.39  Aligned_cols=99  Identities=20%  Similarity=0.260  Sum_probs=52.2

Q ss_pred             eEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCcEEEccccc
Q psy14661         48 KEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELWVSYNY  124 (202)
Q Consensus        48 ~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~  124 (202)
                      +.++++++.++.+|..+.  ++|+.|++++|.++.+  ..|..+++|++|++++|.++.++. .+..+++|+.|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            456666666666665432  5566666666666655  345555555555555555555442 22233455555555555


Q ss_pred             CCCCC-C-CCCCCCccEEEccCCccc
Q psy14661        125 IEKTK-G-IGVMRKLKVLYMSNNLVK  148 (202)
Q Consensus       125 l~~~~-~-~~~~~~L~~L~l~~n~l~  148 (202)
                      ++.++ . +..+++|+.|++++|.+.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcc
Confidence            55444 1 444455555555555444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.47  E-value=1.1e-13  Score=116.51  Aligned_cols=120  Identities=18%  Similarity=0.205  Sum_probs=103.7

Q ss_pred             CceEEEccCccccccchhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccccc
Q psy14661         46 EAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNY  124 (202)
Q Consensus        46 ~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~  124 (202)
                      .++.|++++|.+..+|. +..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.+| ....+++|+.|++++|.
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence            58999999999999998 99999999999999999988 78999999999999999999988 44555899999999999


Q ss_pred             CCCC--C-CCCCCCCccEEEccCCcccCcccc--ccCCCCCcceEEEe
Q psy14661        125 IEKT--K-GIGVMRKLKVLYMSNNLVKEWAEF--VKLGECPSLIDLVF  167 (202)
Q Consensus       125 l~~~--~-~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~l~l  167 (202)
                      ++++  | .++.+++|+.|++++|.+++.+..  .....+++|+.|++
T Consensus       520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9987  6 588999999999999999876531  12234778888764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.46  E-value=1.1e-12  Score=107.69  Aligned_cols=121  Identities=18%  Similarity=0.259  Sum_probs=66.7

Q ss_pred             CCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccccc
Q psy14661         45 SEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNY  124 (202)
Q Consensus        45 ~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~  124 (202)
                      ++++.|++++|.+..+|. +..+++|+.|++++|.++.++..  ..+|++|++++|.++.++.+ ..+++|+.|++++|.
T Consensus       131 ~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~-~~l~~L~~L~l~~N~  206 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPEL-QNLPFLTAIYADNNS  206 (454)
T ss_dssp             TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC-TTCTTCCEEECCSSC
T ss_pred             CCCCEEECcCCCCCCCcc-cCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccc-cCCCCCCEEECCCCc
Confidence            578888888888777774 77888888888888877765221  13566666666665555432 222455555555555


Q ss_pred             CCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCC
Q psy14661        125 IEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE  174 (202)
Q Consensus       125 l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~  174 (202)
                      ++++|..  .++|+.|++++|.+..++   .++.+++|+++++++|.++.
T Consensus       207 l~~l~~~--~~~L~~L~l~~n~l~~lp---~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          207 LKKLPDL--PLSLESIVAGNNILEELP---ELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CSSCCCC--CTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSS
T ss_pred             CCcCCCC--cCcccEEECcCCcCCccc---ccCCCCCCCEEECCCCcCCc
Confidence            5444321  124444444444444332   13344444444444444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.46  E-value=1.4e-13  Score=115.79  Aligned_cols=123  Identities=19%  Similarity=0.206  Sum_probs=89.0

Q ss_pred             CCCceEEEccCccccccchhhc------------------cCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCcccccc
Q psy14661         44 ISEAKEVGLQMQFIEKMDSSLA------------------VLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSF  105 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~~l~------------------~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~  105 (202)
                      +++|+.|++++|.+..+|. +.                  .+++|+.|++++|.++.++.  .+++|++|++++|.++.+
T Consensus        99 l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~l  175 (571)
T 3cvr_A           99 PASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFL  175 (571)
T ss_dssp             CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCC
T ss_pred             cCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCc
Confidence            4556666666665554444 22                  34556666666666665533  456788888888888887


Q ss_pred             CCcccccCCCcEEEcccccCCCCCCCCCCCCc-------cEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661        106 AGLEPLAETLEELWVSYNYIEKTKGIGVMRKL-------KVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       106 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      |. +.  ++|+.|++++|.++.+|.+..  +|       +.|++++|.++.++.  .+..+++|+.|++++|++++..
T Consensus       176 p~-l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~lp~--~l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          176 PE-LP--ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRITHIPE--NILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             CC-CC--TTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCCCCCG--GGGGSCTTEEEECCSSSCCHHH
T ss_pred             ch-hh--CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcceecCH--HHhcCCCCCEEEeeCCcCCCcC
Confidence            76 33  799999999999999887433  67       999999999998765  5667999999999999998765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.45  E-value=1.3e-14  Score=114.21  Aligned_cols=102  Identities=19%  Similarity=0.209  Sum_probs=56.6

Q ss_pred             CCCceEEEccCccccc--cchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCc-cccc--cCCcccccCCCc
Q psy14661         44 ISEAKEVGLQMQFIEK--MDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARN-NIKS--FAGLEPLAETLE  116 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~--l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n-~l~~--~~~~~~~~~~L~  116 (202)
                      +++++.|++++|.+..  ++..+..+++|++|++++|.+++.  ..+..+++|++|++++| .++.  ++.....+++|+
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            4557777777776543  555566677777777777766643  44555666666666666 4542  233233345566


Q ss_pred             EEEcccc-cCCC--CC-CCCCCC-CccEEEccCC
Q psy14661        117 ELWVSYN-YIEK--TK-GIGVMR-KLKVLYMSNN  145 (202)
Q Consensus       117 ~L~l~~n-~l~~--~~-~~~~~~-~L~~L~l~~n  145 (202)
                      .|++++| .+++  ++ .+..++ +|+.|++++|
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            6666665 5443  22 133344 4555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=1e-12  Score=93.89  Aligned_cols=87  Identities=22%  Similarity=0.241  Sum_probs=72.3

Q ss_pred             CCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCc
Q psy14661         41 GIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLE  116 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~  116 (202)
                      ...+.+++.|++++|.+..+++ .+..+++|+.|++++|.++.+  ..|..+++|++|++++|.++.++. .+..+++|+
T Consensus        26 ~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  105 (170)
T 3g39_A           26 TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT  105 (170)
T ss_dssp             SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence            3446789999999999999855 499999999999999999998  457889999999999999988773 355557888


Q ss_pred             EEEcccccCCC
Q psy14661        117 ELWVSYNYIEK  127 (202)
Q Consensus       117 ~L~l~~n~l~~  127 (202)
                      .|++++|.++-
T Consensus       106 ~L~L~~N~~~c  116 (170)
T 3g39_A          106 HIWLLNNPWDC  116 (170)
T ss_dssp             EEECCSSCBCT
T ss_pred             EEEeCCCCCCC
Confidence            88888887654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=1.4e-12  Score=93.62  Aligned_cols=106  Identities=16%  Similarity=0.217  Sum_probs=91.1

Q ss_pred             CCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEcccccCCCCCC--CCCCCCccEEEccC
Q psy14661         69 NCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYNYIEKTKG--IGVMRKLKVLYMSN  144 (202)
Q Consensus        69 ~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~  144 (202)
                      .-+.+++++|.++.+ ..+.  ++|++|++++|.++.++ ..+..+++|+.|++++|.++.+|.  |..+++|+.|++++
T Consensus        13 ~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            347899999999988 4443  78999999999999875 455566899999999999999883  68999999999999


Q ss_pred             CcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661        145 NLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD  177 (202)
Q Consensus       145 n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  177 (202)
                      |.++.++. ..+..+++|++|++.+|++.+.+.
T Consensus        91 N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence            99998754 458889999999999999998874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.43  E-value=7.9e-13  Score=116.08  Aligned_cols=141  Identities=18%  Similarity=0.099  Sum_probs=116.9

Q ss_pred             eEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccc-ccc-CCcccccCCCcEEEcccc
Q psy14661         48 KEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNI-KSF-AGLEPLAETLEELWVSYN  123 (202)
Q Consensus        48 ~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l-~~~-~~~~~~~~~L~~L~l~~n  123 (202)
                      ..++.+++++..+|.   ..++++.|++++|.++.+  ..|..+++|++|++++|.. ..+ +..+..+++|+.|++++|
T Consensus         7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            457788888999998   458999999999999987  7899999999999999944 445 355566689999999999


Q ss_pred             cCCCC-C-CCCCCCCccEEEccCCcccCc-cccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        124 YIEKT-K-GIGVMRKLKVLYMSNNLVKEW-AEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       124 ~l~~~-~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      .++.+ | .+..+++|++|++++|.+.+. +....++.+++|++|++++|.+....+..     .++.+++|++|+
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-----~~~~L~~L~~L~  154 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP-----SFGKLNSLKSID  154 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG-----GGGTCSSCCEEE
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch-----hHhhCCCCCEEE
Confidence            99986 4 589999999999999999862 22234889999999999999998876432     467899999877

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.43  E-value=1.5e-12  Score=110.67  Aligned_cols=70  Identities=23%  Similarity=0.174  Sum_probs=41.2

Q ss_pred             CCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCc
Q psy14661        113 ETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNL  192 (202)
Q Consensus       113 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L  192 (202)
                      ++|+.|++++|.++.+|  ..+++|+.|++++|.++.++.     .+++|+.|++++|.++..+ .      .+..+++|
T Consensus       221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp-~------~l~~l~~L  286 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLP-E------SLIHLSSE  286 (622)
T ss_dssp             TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSCC-G------GGGGSCTT
T ss_pred             CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcCC-H------HHhhcccc
Confidence            34555555555555544  234556666666666665432     4566777777777777554 1      35667777


Q ss_pred             cccc
Q psy14661        193 KKLD  196 (202)
Q Consensus       193 ~~L~  196 (202)
                      +.|+
T Consensus       287 ~~L~  290 (622)
T 3g06_A          287 TTVN  290 (622)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            7655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.42  E-value=6.3e-13  Score=114.92  Aligned_cols=110  Identities=16%  Similarity=0.185  Sum_probs=99.3

Q ss_pred             cCCCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEE
Q psy14661         40 NGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEEL  118 (202)
Q Consensus        40 ~~~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L  118 (202)
                      ....+..|+.|+|++|.+..+|..+..+++|+.|+|++|.++.+ ..|..+++|++|++++|.++.+|..+..+++|+.|
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            34567889999999999999998888999999999999999988 77899999999999999999998766777999999


Q ss_pred             EcccccCCCCC-CCCCCCCccEEEccCCcccC
Q psy14661        119 WVSYNYIEKTK-GIGVMRKLKVLYMSNNLVKE  149 (202)
Q Consensus       119 ~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~  149 (202)
                      ++++|.++.+| .++.+++|+.|++++|.++.
T Consensus       299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             ECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            99999999998 58999999999999999986

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.39  E-value=1.1e-13  Score=111.14  Aligned_cols=39  Identities=21%  Similarity=0.105  Sum_probs=22.6

Q ss_pred             CCCCceEEEccCccccc-----cchhhccCCCCCEEECCCCCCc
Q psy14661         43 PISEAKEVGLQMQFIEK-----MDSSLAVLTNCEKLSLSTNMIE   81 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~-----l~~~l~~l~~L~~L~l~~n~i~   81 (202)
                      ..++|+.|++++|.++.     ++..+..+++|+.|++++|.++
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            34556666666666444     4445555666666666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.39  E-value=9.5e-13  Score=111.81  Aligned_cols=80  Identities=29%  Similarity=0.266  Sum_probs=69.1

Q ss_pred             CCCcEEEccCccccccCCcccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecC
Q psy14661         90 KKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG  169 (202)
Q Consensus        90 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~  169 (202)
                      ++|++|++++|.++.++   ..+++|+.|++++|.++.+|.  .+++|+.|++++|.++.++.  .+..+++|+.|++++
T Consensus       221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~--~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEG  293 (622)
T ss_dssp             TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCG--GGGGSCTTCEEECCS
T ss_pred             CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCH--HHhhccccCEEEecC
Confidence            67888899988888776   334789999999999999887  67899999999999998754  688999999999999


Q ss_pred             CcCCCCC
Q psy14661        170 NPLVEGM  176 (202)
Q Consensus       170 n~~~~~~  176 (202)
                      |+++...
T Consensus       294 N~l~~~~  300 (622)
T 3g06_A          294 NPLSERT  300 (622)
T ss_dssp             CCCCHHH
T ss_pred             CCCCCcC
Confidence            9998654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.39  E-value=1e-12  Score=104.31  Aligned_cols=149  Identities=15%  Similarity=0.092  Sum_probs=81.6

Q ss_pred             CCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc---cCCCCCCCCcE-EEccCccccccC-CcccccCCCc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKV-LSLARNNIKSFA-GLEPLAETLE  116 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~---~~~~~l~~L~~-L~l~~n~l~~~~-~~~~~~~~L~  116 (202)
                      .+.+++.|+|++|.++.+|+. |..+++|+.|++++|.+.+.   ..|..+++++. +.+..|+++.++ ..+..+++|+
T Consensus        28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence            456788888888888888864 78888888888888876442   23444444432 233344444433 2223334444


Q ss_pred             EEEcccccCCCCC---------------------------CCCCC-CCccEEEccCCcccCccc----------------
Q psy14661        117 ELWVSYNYIEKTK---------------------------GIGVM-RKLKVLYMSNNLVKEWAE----------------  152 (202)
Q Consensus       117 ~L~l~~n~l~~~~---------------------------~~~~~-~~L~~L~l~~n~l~~~~~----------------  152 (202)
                      .|++++|.++.++                           .+..+ ..++.|++++|.++.++.                
T Consensus       108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN  187 (350)
T ss_dssp             EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC
T ss_pred             cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC
Confidence            4444444433221                           01111 234455555555544321                


Q ss_pred             -------cccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661        153 -------FVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG  197 (202)
Q Consensus       153 -------~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~  197 (202)
                             ...+..+++|+.|++++|.++..++.      .+..+++|+.++.
T Consensus       188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~------~~~~L~~L~~l~~  233 (350)
T 4ay9_X          188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSY------GLENLKKLRARST  233 (350)
T ss_dssp             TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS------SCTTCCEEECTTC
T ss_pred             CcccCCCHHHhccCcccchhhcCCCCcCccChh------hhccchHhhhccC
Confidence                   13456667777888888877777643      3445555554443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.38  E-value=1.9e-12  Score=102.63  Aligned_cols=127  Identities=17%  Similarity=0.144  Sum_probs=95.9

Q ss_pred             eEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccc-cC-CcccccCCCcE-EEccc
Q psy14661         48 KEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-FA-GLEPLAETLEE-LWVSY  122 (202)
Q Consensus        48 ~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~~~~~~~~L~~-L~l~~  122 (202)
                      ++++.++++++.+|..+  .+++++|++++|.|+.+  ..|..+++|++|++++|.+.. ++ ..+..++++.+ +.+..
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            56788888899999865  46899999999999998  468999999999999999754 55 34444466654 66677


Q ss_pred             ccCCCCC--CCCCCCCccEEEccCCcccCcccc------------------------ccCCCC-CcceEEEecCCcCCCC
Q psy14661        123 NYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEF------------------------VKLGEC-PSLIDLVFCGNPLVEG  175 (202)
Q Consensus       123 n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~------------------------~~~~~l-~~L~~l~l~~n~~~~~  175 (202)
                      |.++.++  .|..+++|+.|++++|.+..++..                        ..+..+ ..++.+++++|.++..
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            8898875  488999999999999987654321                        011222 2477888888888766


Q ss_pred             C
Q psy14661        176 M  176 (202)
Q Consensus       176 ~  176 (202)
                      +
T Consensus       170 ~  170 (350)
T 4ay9_X          170 H  170 (350)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.38  E-value=7.2e-13  Score=105.55  Aligned_cols=149  Identities=16%  Similarity=0.120  Sum_probs=83.2

Q ss_pred             CceEEEccCccccccch-hhccC-----CCCCEEECCCCCCcCc--c----CCCCC-CCCcEEEccCccccccCC--c--
Q psy14661         46 EAKEVGLQMQFIEKMDS-SLAVL-----TNCEKLSLSTNMIEKI--N----GLSGL-KKLKVLSLARNNIKSFAG--L--  108 (202)
Q Consensus        46 ~l~~L~l~~~~i~~l~~-~l~~l-----~~L~~L~l~~n~i~~~--~----~~~~l-~~L~~L~l~~n~l~~~~~--~--  108 (202)
                      +++.|++++|.++.... .+..+     ++|+.|++++|.++..  .    .+..+ ++|++|++++|.++..+.  +  
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            57777777776655432 23332     6777777777776654  1    23344 567777777777665431  1  


Q ss_pred             -ccc-cCCCcEEEcccccCCCCC------CCCCCC-CccEEEccCCcccCcccc---ccCCCC-CcceEEEecCCcCCCC
Q psy14661        109 -EPL-AETLEELWVSYNYIEKTK------GIGVMR-KLKVLYMSNNLVKEWAEF---VKLGEC-PSLIDLVFCGNPLVEG  175 (202)
Q Consensus       109 -~~~-~~~L~~L~l~~n~l~~~~------~~~~~~-~L~~L~l~~n~l~~~~~~---~~~~~l-~~L~~l~l~~n~~~~~  175 (202)
                       ... ..+|+.|++++|.+++..      .+...+ +|+.|++++|.+++....   ..+..+ ++|++|++++|.+++.
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~  211 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK  211 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence             111 246777777777766422      123333 777777777777653321   123344 4777777777777665


Q ss_pred             CCchhhHHHHHHh-CCCccccc
Q psy14661        176 MDDPLYKSEVKKR-LPNLKKLD  196 (202)
Q Consensus       176 ~~~~~~~~~~~~~-l~~L~~L~  196 (202)
                      .  .......+.. .++|++||
T Consensus       212 ~--~~~l~~~l~~~~~~L~~L~  231 (362)
T 3goz_A          212 S--YAELAYIFSSIPNHVVSLN  231 (362)
T ss_dssp             C--HHHHHHHHHHSCTTCCEEE
T ss_pred             H--HHHHHHHHhcCCCCceEEE
Confidence            4  2323333444 34677665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.34  E-value=1.2e-12  Score=102.84  Aligned_cols=149  Identities=20%  Similarity=0.156  Sum_probs=84.6

Q ss_pred             CCceEEEccCccccccchhhccCCCCCEEECCCCCCcC--c-cCCCCCCCCcEEEccCccccc-cCCcccccCCCcEEEc
Q psy14661         45 SEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEK--I-NGLSGLKKLKVLSLARNNIKS-FAGLEPLAETLEELWV  120 (202)
Q Consensus        45 ~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~--~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~L~~L~l  120 (202)
                      ..++.+++++|.+...++.+..+++|+.|++++|.++.  + ..+..+++|++|++++|.++. .+.....+++|+.|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            34555555555555444445556677777777766654  2 345566677777777766652 2222223466777777


Q ss_pred             ccc-cCCC--CCC-CCCCCCccEEEccCC-cccCccccccCCCCC-cceEEEecCCc--CCCCCCchhhHHHHHHhCCCc
Q psy14661        121 SYN-YIEK--TKG-IGVMRKLKVLYMSNN-LVKEWAEFVKLGECP-SLIDLVFCGNP--LVEGMDDPLYKSEVKKRLPNL  192 (202)
Q Consensus       121 ~~n-~l~~--~~~-~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~-~L~~l~l~~n~--~~~~~~~~~~~~~~~~~l~~L  192 (202)
                      ++| .++.  ++. +..+++|+.|++++| .+++......+..++ +|++|++++|.  +++     ......+..+++|
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~-----~~l~~~~~~~~~L  224 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK-----SDLSTLVRRCPNL  224 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH-----HHHHHHHHHCTTC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH-----HHHHHHHhhCCCC
Confidence            776 4553  332 455667777777777 666532223455666 77777777773  321     1112255667777


Q ss_pred             ccccCc
Q psy14661        193 KKLDGE  198 (202)
Q Consensus       193 ~~L~~~  198 (202)
                      ++|+-.
T Consensus       225 ~~L~l~  230 (336)
T 2ast_B          225 VHLDLS  230 (336)
T ss_dssp             SEEECT
T ss_pred             CEEeCC
Confidence            776643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.32  E-value=8e-13  Score=105.28  Aligned_cols=150  Identities=17%  Similarity=0.145  Sum_probs=81.6

Q ss_pred             CCceEEEccCccccccchh-----hccC-CCCCEEECCCCCCcCc--c----CCCC-CCCCcEEEccCccccccC-----
Q psy14661         45 SEAKEVGLQMQFIEKMDSS-----LAVL-TNCEKLSLSTNMIEKI--N----GLSG-LKKLKVLSLARNNIKSFA-----  106 (202)
Q Consensus        45 ~~l~~L~l~~~~i~~l~~~-----l~~l-~~L~~L~l~~n~i~~~--~----~~~~-l~~L~~L~l~~n~l~~~~-----  106 (202)
                      ++++.|++++|.+...+..     +..+ ++|+.|++++|.++..  .    .+.. .++|++|++++|.++...     
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            6677788877776654432     4444 6777777777777655  1    2333 246777777777776321     


Q ss_pred             CcccccC-CCcEEEcccccCCCCC------CCCCC-CCccEEEccCCcccCccc---cccCCC-CCcceEEEecCCcCCC
Q psy14661        107 GLEPLAE-TLEELWVSYNYIEKTK------GIGVM-RKLKVLYMSNNLVKEWAE---FVKLGE-CPSLIDLVFCGNPLVE  174 (202)
Q Consensus       107 ~~~~~~~-~L~~L~l~~n~l~~~~------~~~~~-~~L~~L~l~~n~l~~~~~---~~~~~~-l~~L~~l~l~~n~~~~  174 (202)
                      ......+ +|+.|++++|.++..+      .+... ++|+.|++++|.+++...   ...+.. .++|++|++++|.+++
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            1111122 6777777777766543      12233 467777777776665211   012222 3466677777666666


Q ss_pred             CCCchhhHHHHHHhCCCccccc
Q psy14661        175 GMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       175 ~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      ..  .......+..+++|++|+
T Consensus       240 ~~--~~~l~~~~~~l~~L~~L~  259 (362)
T 3goz_A          240 PS--LENLKLLKDSLKHLQTVY  259 (362)
T ss_dssp             CC--HHHHHHTTTTTTTCSEEE
T ss_pred             HH--HHHHHHHHhcCCCccEEE
Confidence            54  222222334444554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.31  E-value=1.6e-14  Score=105.77  Aligned_cols=130  Identities=28%  Similarity=0.316  Sum_probs=107.0

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS  121 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  121 (202)
                      .+++++.|++++|.+..+| .+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++.+ ..+++|+.|+++
T Consensus        46 ~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~-~~l~~L~~L~l~  123 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGI-EKLVNLRVLYMS  123 (198)
T ss_dssp             HTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHH-HHHHHSSEEEES
T ss_pred             cCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCcc-ccCCCCCEEECC
Confidence            4678999999999999998 799999999999999999987 4455568999999999999987743 344899999999


Q ss_pred             cccCCCCC---CCCCCCCccEEEccCCcccCccc---------cccCCCCCcceEEEecCCcCCCCC
Q psy14661        122 YNYIEKTK---GIGVMRKLKVLYMSNNLVKEWAE---------FVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       122 ~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~---------~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      +|.++.++   .+..+++|+.|++++|.+.+...         ...+..+++|+.++  +++++...
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~e  188 (198)
T 1ds9_A          124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVDE  188 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTTT
T ss_pred             CCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHHH
Confidence            99999865   37889999999999999876421         12367788999887  77776653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.28  E-value=1.1e-12  Score=105.17  Aligned_cols=130  Identities=19%  Similarity=0.163  Sum_probs=65.0

Q ss_pred             CCceEEEccCcccc--ccc---hhhccCCCCCEEECCCCCCcC-----c-c-CCCCCCCCcEEEccCcccc-----ccCC
Q psy14661         45 SEAKEVGLQMQFIE--KMD---SSLAVLTNCEKLSLSTNMIEK-----I-N-GLSGLKKLKVLSLARNNIK-----SFAG  107 (202)
Q Consensus        45 ~~l~~L~l~~~~i~--~l~---~~l~~l~~L~~L~l~~n~i~~-----~-~-~~~~l~~L~~L~l~~n~l~-----~~~~  107 (202)
                      ++|+.|++++|.+.  .++   ..+..+++|+.|++++|.++.     + + .+..+++|++|++++|.++     .++.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            44555555555543  223   234455556666666655551     1 2 4555555666666666552     2222


Q ss_pred             cccccCCCcEEEcccccCCCC-----C-CC--CCCCCccEEEccCCcccC-----ccccccC-CCCCcceEEEecCCcCC
Q psy14661        108 LEPLAETLEELWVSYNYIEKT-----K-GI--GVMRKLKVLYMSNNLVKE-----WAEFVKL-GECPSLIDLVFCGNPLV  173 (202)
Q Consensus       108 ~~~~~~~L~~L~l~~n~l~~~-----~-~~--~~~~~L~~L~l~~n~l~~-----~~~~~~~-~~l~~L~~l~l~~n~~~  173 (202)
                      ....+++|+.|++++|.++..     + .+  +.+++|+.|++++|.+++     ++  ..+ ..+++|++|++++|+++
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~--~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK--TVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH--HHHHHHCTTCCEEECTTSBSC
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH--HHHHhcCCCceEEEccCCcCC
Confidence            233335566666666655542     1 12  235556666666665554     21  122 33555666666666665


Q ss_pred             CCC
Q psy14661        174 EGM  176 (202)
Q Consensus       174 ~~~  176 (202)
                      ...
T Consensus       317 ~~~  319 (386)
T 2ca6_A          317 EED  319 (386)
T ss_dssp             TTS
T ss_pred             cch
Confidence            543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=4.8e-12  Score=100.05  Aligned_cols=102  Identities=18%  Similarity=0.277  Sum_probs=79.8

Q ss_pred             eEEEccCc-cccccchhhccCCCCCEEECCC-CCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEccc
Q psy14661         48 KEVGLQMQ-FIEKMDSSLAVLTNCEKLSLST-NMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSY  122 (202)
Q Consensus        48 ~~L~l~~~-~i~~l~~~l~~l~~L~~L~l~~-n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~  122 (202)
                      ..++.+++ .+..+|. +..+++|+.|+|++ |.++.+  ..|..+++|++|++++|.++.++ ..+..+++|+.|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            45688887 7888888 88888899999986 888887  56888889999999999888766 3455568888888888


Q ss_pred             ccCCCCC-C-CCCCCCccEEEccCCcccCcc
Q psy14661        123 NYIEKTK-G-IGVMRKLKVLYMSNNLVKEWA  151 (202)
Q Consensus       123 n~l~~~~-~-~~~~~~L~~L~l~~n~l~~~~  151 (202)
                      |.++.+| . +..+. |+.|++.+|.+....
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCSC  119 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence            8888876 2 44444 888888888876533

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.24  E-value=3.1e-11  Score=94.83  Aligned_cols=143  Identities=15%  Similarity=0.129  Sum_probs=96.1

Q ss_pred             CCCceEEEccCcccc--------------------ccchh-hcc--------CCCCCEEECCCCCCcCc--cCCCCCCCC
Q psy14661         44 ISEAKEVGLQMQFIE--------------------KMDSS-LAV--------LTNCEKLSLSTNMIEKI--NGLSGLKKL   92 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~--------------------~l~~~-l~~--------l~~L~~L~l~~n~i~~~--~~~~~l~~L   92 (202)
                      +++|+.|+|++|.+.                    .+|.. |..        +++|+.+++.. .++.+  ..|..+++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            677888888888876                    34433 667        88888888888 77777  668888888


Q ss_pred             cEEEccCccccccCC---------------c--------------c----------------------------------
Q psy14661         93 KVLSLARNNIKSFAG---------------L--------------E----------------------------------  109 (202)
Q Consensus        93 ~~L~l~~n~l~~~~~---------------~--------------~----------------------------------  109 (202)
                      +.++++.|.+..++.               .              +                                  
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            888887776422110               0              0                                  


Q ss_pred             ----------------cccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcce-EEEecCC
Q psy14661        110 ----------------PLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLI-DLVFCGN  170 (202)
Q Consensus       110 ----------------~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~l~l~~n  170 (202)
                                      ..+++|+.+++++|.++.++  .|..+.+|+.+++.+| +..++. ..+.+|.+|+ .+.+.. 
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~-  283 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA-  283 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT-
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc-
Confidence                            01467888888888888776  4777888888888776 555543 5666777777 777765 


Q ss_pred             cCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        171 PLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      .++...+.      .+..+++|+.++
T Consensus       284 ~l~~I~~~------aF~~c~~L~~l~  303 (329)
T 3sb4_A          284 SVTAIEFG------AFMGCDNLRYVL  303 (329)
T ss_dssp             TCCEECTT------TTTTCTTEEEEE
T ss_pred             cceEEchh------hhhCCccCCEEE
Confidence            55554432      456666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.22  E-value=3.1e-12  Score=104.62  Aligned_cols=154  Identities=21%  Similarity=0.216  Sum_probs=97.8

Q ss_pred             CCCceEEEccCcccc-----ccchhhccCCCCCEEECCCCCCcCc------cCCCCCC-CCcEEEccCccccc-----cC
Q psy14661         44 ISEAKEVGLQMQFIE-----KMDSSLAVLTNCEKLSLSTNMIEKI------NGLSGLK-KLKVLSLARNNIKS-----FA  106 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~-----~l~~~l~~l~~L~~L~l~~n~i~~~------~~~~~l~-~L~~L~l~~n~l~~-----~~  106 (202)
                      +++++.|++++|.+.     .++..+..+++|++|++++|.+++.      ..+.... +|++|++++|.++.     ++
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  106 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  106 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence            456888888888865     4556677788888888888887753      2232222 68888888888773     23


Q ss_pred             CcccccCCCcEEEcccccCCCCC------C-CCCCCCccEEEccCCcccCccc---cccCCCCCcceEEEecCCcCCCCC
Q psy14661        107 GLEPLAETLEELWVSYNYIEKTK------G-IGVMRKLKVLYMSNNLVKEWAE---FVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       107 ~~~~~~~~L~~L~l~~n~l~~~~------~-~~~~~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      .....+++|+.|++++|.++...      . ....++|+.|++++|.+++...   ...+..+++|++|++++|.+.+..
T Consensus       107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  186 (461)
T 1z7x_W          107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG  186 (461)
T ss_dssp             HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence            33444578888888888876421      1 2335578888888888776321   234556778888888888876543


Q ss_pred             CchhhHHHHHHhCCCcccccCc
Q psy14661        177 DDPLYKSEVKKRLPNLKKLDGE  198 (202)
Q Consensus       177 ~~~~~~~~~~~~l~~L~~L~~~  198 (202)
                      . ..+........++|++|+-.
T Consensus       187 ~-~~l~~~l~~~~~~L~~L~L~  207 (461)
T 1z7x_W          187 V-RVLCQGLKDSPCQLEALKLE  207 (461)
T ss_dssp             H-HHHHHHHHHSCCCCCEEECT
T ss_pred             H-HHHHHHHhcCCCCceEEEcc
Confidence            1 11111122235577776643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.22  E-value=4.4e-11  Score=94.00  Aligned_cols=99  Identities=13%  Similarity=0.078  Sum_probs=83.8

Q ss_pred             CCCCcEEEccCccccccC-CcccccCCCcEEEcccccCCCCC--CCCCCCCcc-EEEccCCcccCccccccCCCCCcceE
Q psy14661         89 LKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYNYIEKTK--GIGVMRKLK-VLYMSNNLVKEWAEFVKLGECPSLID  164 (202)
Q Consensus        89 l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~  164 (202)
                      +++|+.+++++|+++.++ ..+..+.+|+.+++.+| ++.++  .|..+.+|+ .+.+.+ .++.++. ..+.+|++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~-~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF-GAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT-TTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch-hhhhCCccCCE
Confidence            678999999999999888 45556689999999998 77776  589999999 999988 6777654 68999999999


Q ss_pred             EEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        165 LVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       165 l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      +++.+|.+....+.      .+..+++|+.+.
T Consensus       302 l~l~~n~i~~I~~~------aF~~~~~L~~ly  327 (329)
T 3sb4_A          302 VLATGDKITTLGDE------LFGNGVPSKLIY  327 (329)
T ss_dssp             EEECSSCCCEECTT------TTCTTCCCCEEE
T ss_pred             EEeCCCccCccchh------hhcCCcchhhhc
Confidence            99999999888754      678899998875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.18  E-value=3.5e-12  Score=104.29  Aligned_cols=13  Identities=31%  Similarity=0.429  Sum_probs=5.5

Q ss_pred             CcceEEEecCCcC
Q psy14661        160 PSLIDLVFCGNPL  172 (202)
Q Consensus       160 ~~L~~l~l~~n~~  172 (202)
                      ++|++|++++|.+
T Consensus       341 ~~L~~L~Ls~n~i  353 (461)
T 1z7x_W          341 RFLLELQISNNRL  353 (461)
T ss_dssp             SSCCEEECCSSBC
T ss_pred             CCccEEEccCCcc
Confidence            3444444444433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=2.9e-10  Score=89.75  Aligned_cols=105  Identities=17%  Similarity=0.206  Sum_probs=88.3

Q ss_pred             CEEECCCC-CCcCccCCCCCCCCcEEEccC-ccccccC-CcccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCC
Q psy14661         71 EKLSLSTN-MIEKINGLSGLKKLKVLSLAR-NNIKSFA-GLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNN  145 (202)
Q Consensus        71 ~~L~l~~n-~i~~~~~~~~l~~L~~L~l~~-n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n  145 (202)
                      ..++.+++ .++.++.+..+.+|++|++++ |.++.++ ..+..+++|+.|+|++|.++.++  .|..+++|+.|+|++|
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            45688888 899984499999999999996 9999887 45556689999999999999876  4789999999999999


Q ss_pred             cccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661        146 LVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD  177 (202)
Q Consensus       146 ~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  177 (202)
                      .++.++. ..+..++ |+.|++.+|++.+.+.
T Consensus        91 ~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           91 ALESLSW-KTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             CCSCCCS-TTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             ccceeCH-HHcccCC-ceEEEeeCCCccCCCc
Confidence            9998764 3444444 9999999999998864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.15  E-value=2.5e-12  Score=102.92  Aligned_cols=151  Identities=15%  Similarity=0.142  Sum_probs=83.8

Q ss_pred             CCCceEEEccCccccccch-----hhc-cCCCCCEEECCCCCCcCc--cCC-CCCCCCcEEEccCccccccC--Ccc---
Q psy14661         44 ISEAKEVGLQMQFIEKMDS-----SLA-VLTNCEKLSLSTNMIEKI--NGL-SGLKKLKVLSLARNNIKSFA--GLE---  109 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~-----~l~-~l~~L~~L~l~~n~i~~~--~~~-~~l~~L~~L~l~~n~l~~~~--~~~---  109 (202)
                      ...++.|++++|.+.....     .+. ..++|+.|++++|.++..  ..+ ..+++|++|++++|.++...  .+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3457777777777554322     122 225777777777777643  222 23446677777777665422  110   


Q ss_pred             -cccCCCcEEEcccccCCCCC------CCCCCCCccEEEccCCcccCccc---cccCCCCCcceEEEecCCcCCCCCCch
Q psy14661        110 -PLAETLEELWVSYNYIEKTK------GIGVMRKLKVLYMSNNLVKEWAE---FVKLGECPSLIDLVFCGNPLVEGMDDP  179 (202)
Q Consensus       110 -~~~~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~l~l~~n~~~~~~~~~  179 (202)
                       ...++|+.|++++|.++...      .+...++|++|++++|.+++.+.   ...+...++|+.|++++|.+++..  .
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g--~  228 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA--A  228 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH--H
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH--H
Confidence             11246777777777665421      23455667777777777665321   123445566777777777765543  2


Q ss_pred             hhHHHHHHhCCCccccc
Q psy14661        180 LYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       180 ~~~~~~~~~l~~L~~L~  196 (202)
                      ......+..+++|++||
T Consensus       229 ~~l~~~L~~~~~L~~L~  245 (372)
T 3un9_A          229 LALARAAREHPSLELLH  245 (372)
T ss_dssp             HHHHHHHHHCSSCCEEE
T ss_pred             HHHHHHHHhCCCCCEEe
Confidence            33333455666666655

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=99.10  E-value=2.6e-10  Score=86.95  Aligned_cols=116  Identities=28%  Similarity=0.367  Sum_probs=88.0

Q ss_pred             CCCCCCCcE--EEccCccccccCC----cccccCCCcEEEcccccCCCCCCC----CCCCCccEEEccCCcccCcccccc
Q psy14661         86 LSGLKKLKV--LSLARNNIKSFAG----LEPLAETLEELWVSYNYIEKTKGI----GVMRKLKVLYMSNNLVKEWAEFVK  155 (202)
Q Consensus        86 ~~~l~~L~~--L~l~~n~l~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~  155 (202)
                      +...+.|..  ++++.|....++.    ....+++|+.|+|++|.+++++.+    ..+++|+.|+|++|.++++..+..
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~  216 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK  216 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence            333444444  5566665444332    122357999999999999987643    478999999999999999866666


Q ss_pred             CCCCCcceEEEecCCcCCCCCC-chhhHHHHHHhCCCcccccCccCCC
Q psy14661        156 LGECPSLIDLVFCGNPLVEGMD-DPLYKSEVKKRLPNLKKLDGEVLPE  202 (202)
Q Consensus       156 ~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~~~~~l~~L~~L~~~~~~~  202 (202)
                      +..+ +|+.|++.+|+++...+ .+.|+..++..+|+|+.||+.+|+.
T Consensus       217 l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~p  263 (267)
T 3rw6_A          217 IKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPP  263 (267)
T ss_dssp             GTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCCC
T ss_pred             cccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCCC
Confidence            6666 89999999999986443 2578888999999999999998863

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.00  E-value=5.2e-11  Score=95.28  Aligned_cols=134  Identities=19%  Similarity=0.115  Sum_probs=100.4

Q ss_pred             CCCCceEEEccCccccccc--hhhccCCCCCEEECCCCCCcCc--cC----C-CCCCCCcEEEccCccccccC-----Cc
Q psy14661         43 PISEAKEVGLQMQFIEKMD--SSLAVLTNCEKLSLSTNMIEKI--NG----L-SGLKKLKVLSLARNNIKSFA-----GL  108 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~--~~l~~l~~L~~L~l~~n~i~~~--~~----~-~~l~~L~~L~l~~n~l~~~~-----~~  108 (202)
                      ..++++.|+|++|.++...  .....+++|+.|++++|.++..  ..    + ...++|++|++++|.++...     ..
T Consensus        99 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  178 (372)
T 3un9_A           99 GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG  178 (372)
T ss_dssp             CSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence            4568999999999976522  2244567899999999999864  22    2 35678999999999987522     22


Q ss_pred             ccccCCCcEEEcccccCCCCC------CCCCCCCccEEEccCCcccCccc---cccCCCCCcceEEEecCCcCCCCC
Q psy14661        109 EPLAETLEELWVSYNYIEKTK------GIGVMRKLKVLYMSNNLVKEWAE---FVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       109 ~~~~~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      ...+++|+.|++++|.+++..      .+...++|+.|++++|.+++.+.   ...+..+++|++|++++|++++..
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence            233578999999999987532      35667899999999999987432   134456789999999999987653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.83  E-value=3.7e-09  Score=88.89  Aligned_cols=79  Identities=16%  Similarity=0.125  Sum_probs=50.1

Q ss_pred             CCCCceEEEccCccccc-----cchhhccCCCCCEEECCCCCCcCc------cCCCCCCCCcEEEccCccccccCCcccc
Q psy14661         43 PISEAKEVGLQMQFIEK-----MDSSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFAGLEPL  111 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~-----l~~~l~~l~~L~~L~l~~n~i~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~  111 (202)
                      .+++|+.|++++|.+..     ++..+..+++|+.|++++|.++.+      ..+..+++|++|++++|.+..++.....
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~  241 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA  241 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence            35678888888887433     333456678888888888877632      2344567788888877776554433333


Q ss_pred             cCCCcEEEcc
Q psy14661        112 AETLEELWVS  121 (202)
Q Consensus       112 ~~~L~~L~l~  121 (202)
                      +++|+.|+++
T Consensus       242 ~~~L~~L~l~  251 (592)
T 3ogk_B          242 AANLEEFCGG  251 (592)
T ss_dssp             CTTCCEEEEC
T ss_pred             hhHHHhhccc
Confidence            3555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.75  E-value=1.6e-08  Score=84.97  Aligned_cols=56  Identities=5%  Similarity=0.003  Sum_probs=34.5

Q ss_pred             CCCCceEEEccCcccc-----ccchhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEcc
Q psy14661         43 PISEAKEVGLQMQFIE-----KMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLA   98 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~-----~l~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~   98 (202)
                      ..++|+.|++++|.+.     .++..+..+++|+.|++++|.+..+ ..+..+++|++|+++
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence            3567888888887764     3444466778888888887776554 333334444444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.75  E-value=4.1e-08  Score=79.22  Aligned_cols=65  Identities=18%  Similarity=0.224  Sum_probs=33.8

Q ss_pred             hhhhhhcCCCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccC
Q psy14661         34 KKWEEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLAR   99 (202)
Q Consensus        34 ~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~   99 (202)
                      .......+..+.+|+.+++.+|.+..++...-.+.+|+.+.+..+ ++.+  ..|..+++|+.+.+..
T Consensus       169 ~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          169 EQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             cEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            333334444555566666666555555544222455555555422 4444  4555666666666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.65  E-value=2.2e-08  Score=84.18  Aligned_cols=80  Identities=14%  Similarity=0.107  Sum_probs=45.4

Q ss_pred             CCCceEEEccCcc-ccc--cchhhccCCCCCEEECCCCCCcCc------cCCCCCCCCcEEEccCcc--ccc--cCCccc
Q psy14661         44 ISEAKEVGLQMQF-IEK--MDSSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNN--IKS--FAGLEP  110 (202)
Q Consensus        44 ~~~l~~L~l~~~~-i~~--l~~~l~~l~~L~~L~l~~n~i~~~------~~~~~l~~L~~L~l~~n~--l~~--~~~~~~  110 (202)
                      +++|+.|++++|. ++.  ++..+..+++|++|++++|.+++.      .-...+++|++|++++|.  ++.  +.....
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~  208 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT  208 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence            4567777777773 443  444455677788888877776543      112255677777777665  211  111222


Q ss_pred             ccCCCcEEEcccc
Q psy14661        111 LAETLEELWVSYN  123 (202)
Q Consensus       111 ~~~~L~~L~l~~n  123 (202)
                      .+++|+.|++++|
T Consensus       209 ~~~~L~~L~L~~~  221 (594)
T 2p1m_B          209 RCPNLKSLKLNRA  221 (594)
T ss_dssp             HCTTCCEEECCTT
T ss_pred             hCCCCcEEecCCC
Confidence            2356666666655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.60  E-value=2.4e-07  Score=74.73  Aligned_cols=120  Identities=16%  Similarity=0.218  Sum_probs=55.6

Q ss_pred             CceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEcc
Q psy14661         46 EAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVS  121 (202)
Q Consensus        46 ~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~  121 (202)
                      +|+.+.+.. .+..++.. |..|++|+.+++..|.++.+  ..|. +.+|+.+.+..+ ++.++ ..+..+++|+.+.+.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            355555543 34444433 55666666666666666655  3333 455666666533 44433 223333455555554


Q ss_pred             cccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcC
Q psy14661        122 YNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL  172 (202)
Q Consensus       122 ~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~  172 (202)
                      .+ ++.++  .|.. .+|+.+.+. +.++.++. ..+.+|++|+.+.+.+|.+
T Consensus       235 ~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~-~aF~~c~~L~~l~l~~~~~  283 (401)
T 4fdw_A          235 EN-VSTIGQEAFRE-SGITTVKLP-NGVTNIAS-RAFYYCPELAEVTTYGSTF  283 (401)
T ss_dssp             TT-CCEECTTTTTT-CCCSEEEEE-TTCCEECT-TTTTTCTTCCEEEEESSCC
T ss_pred             CC-ccCcccccccc-CCccEEEeC-CCccEECh-hHhhCCCCCCEEEeCCccc
Confidence            42 22222  1222 334444432 22222222 3455555555555555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.57  E-value=9e-09  Score=86.53  Aligned_cols=147  Identities=18%  Similarity=0.209  Sum_probs=94.4

Q ss_pred             CCCceEEEccCcc-cccc---------------chhhccCCCCCEEECCCCCCcCc--cCCC-CCCCCcEEEccCc-ccc
Q psy14661         44 ISEAKEVGLQMQF-IEKM---------------DSSLAVLTNCEKLSLSTNMIEKI--NGLS-GLKKLKVLSLARN-NIK  103 (202)
Q Consensus        44 ~~~l~~L~l~~~~-i~~l---------------~~~l~~l~~L~~L~l~~n~i~~~--~~~~-~l~~L~~L~l~~n-~l~  103 (202)
                      +++++.|+++++. +.++               +.....+++|++|++++|.+++.  ..+. .+++|++|++.+| .++
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence            4568888888876 3222               11245678999999999888764  3443 5778999999888 554


Q ss_pred             c--cCCcccccCCCcEEEcccccCCCCC-----C-CCCCCCccEEEccCCc--ccCccccccCCCCCcceEEEecCCcCC
Q psy14661        104 S--FAGLEPLAETLEELWVSYNYIEKTK-----G-IGVMRKLKVLYMSNNL--VKEWAEFVKLGECPSLIDLVFCGNPLV  173 (202)
Q Consensus       104 ~--~~~~~~~~~~L~~L~l~~n~l~~~~-----~-~~~~~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~l~l~~n~~~  173 (202)
                      .  ++.....+++|+.|++++|.+++..     . ...+++|+.|++++|.  +..-........+++|++|++.+|...
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~  224 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL  224 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence            3  3344445688999999998876532     2 2366789999998886  322111112245788999998877211


Q ss_pred             CCCCchhhHHHHHHhCCCccccc
Q psy14661        174 EGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                           .. ....+..+++|++|+
T Consensus       225 -----~~-l~~~~~~~~~L~~L~  241 (594)
T 2p1m_B          225 -----EK-LATLLQRAPQLEELG  241 (594)
T ss_dssp             -----HH-HHHHHHHCTTCSEEE
T ss_pred             -----HH-HHHHHhcCCcceEcc
Confidence                 11 222556667776665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.54  E-value=1.4e-08  Score=73.27  Aligned_cols=111  Identities=16%  Similarity=0.101  Sum_probs=67.3

Q ss_pred             hccCCCCCEEECCCC-CCcCc------cCCCCCCCCcEEEccCcccccc-----CCcccccCCCcEEEcccccCCCC---
Q psy14661         64 LAVLTNCEKLSLSTN-MIEKI------NGLSGLKKLKVLSLARNNIKSF-----AGLEPLAETLEELWVSYNYIEKT---  128 (202)
Q Consensus        64 l~~l~~L~~L~l~~n-~i~~~------~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~~~---  128 (202)
                      +...+.|++|++++| .+...      ..+...++|++|++++|.+..-     .......+.|++|++++|.+++-   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            555666666666666 65532      3344455666666666666531     11112225677777777776642   


Q ss_pred             --C-CCCCCCCccEEEc--cCCcccCccc---cccCCCCCcceEEEecCCcCCC
Q psy14661        129 --K-GIGVMRKLKVLYM--SNNLVKEWAE---FVKLGECPSLIDLVFCGNPLVE  174 (202)
Q Consensus       129 --~-~~~~~~~L~~L~l--~~n~l~~~~~---~~~~~~l~~L~~l~l~~n~~~~  174 (202)
                        . .+...++|+.|++  ++|.+.+...   ...+...+.|++|++++|.+..
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence              1 3556677888888  7788776321   1344556788899998888754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.46  E-value=1.2e-07  Score=75.49  Aligned_cols=150  Identities=12%  Similarity=0.068  Sum_probs=80.9

Q ss_pred             CCCceEEEccCccc----------cccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccC--Ccc-c
Q psy14661         44 ISEAKEVGLQMQFI----------EKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFA--GLE-P  110 (202)
Q Consensus        44 ~~~l~~L~l~~~~i----------~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~-~  110 (202)
                      +++|+.|.+.....          ..+...+..+|+|+.|.+++|.--.+..+. +++|++|.+..+.++.-.  .+. .
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~  216 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGS  216 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHc
Confidence            34677776654321          124444667778888888766311223332 677888887777664311  111 1


Q ss_pred             ccCCCcEEEccc--cc------CCCCC-CC--CCCCCccEEEccCCcccCcc--ccccCCCCCcceEEEecCCcCCCCCC
Q psy14661        111 LAETLEELWVSY--NY------IEKTK-GI--GVMRKLKVLYMSNNLVKEWA--EFVKLGECPSLIDLVFCGNPLVEGMD  177 (202)
Q Consensus       111 ~~~~L~~L~l~~--n~------l~~~~-~~--~~~~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~l~l~~n~~~~~~~  177 (202)
                      .+|+|+.|+|+.  +.      +..+. .+  ..+++|++|++.+|.+.+..  .+.....+++|++|+++.|.+.+.. 
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G-  295 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG-  295 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH-
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH-
Confidence            347788877753  21      11111 11  34678888888877766421  1122245677888888777766532 


Q ss_pred             chhhHHHHHHhCCCccccc
Q psy14661        178 DPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       178 ~~~~~~~~~~~l~~L~~L~  196 (202)
                       .......+..+++|+.|+
T Consensus       296 -~~~L~~~L~~l~~L~~L~  313 (362)
T 2ra8_A          296 -ARLLLDHVDKIKHLKFIN  313 (362)
T ss_dssp             -HHHHHTTHHHHTTCSEEE
T ss_pred             -HHHHHhhcccCCcceEEE
Confidence             111111234567777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.44  E-value=4.5e-08  Score=70.60  Aligned_cols=107  Identities=17%  Similarity=0.049  Sum_probs=82.9

Q ss_pred             CCCCceEEEccCc-cccc-----cchhhccCCCCCEEECCCCCCcCc------cCCCCCCCCcEEEccCccccc-----c
Q psy14661         43 PISEAKEVGLQMQ-FIEK-----MDSSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKS-----F  105 (202)
Q Consensus        43 ~~~~l~~L~l~~~-~i~~-----l~~~l~~l~~L~~L~l~~n~i~~~------~~~~~l~~L~~L~l~~n~l~~-----~  105 (202)
                      ..+++++|++++| .++.     +...+...++|++|++++|.|...      ..+...++|++|++++|.++.     +
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            4677999999999 7544     555577889999999999999863      445566789999999999985     2


Q ss_pred             CCcccccCCCcEEEc--ccccCCCCC------CCCCCCCccEEEccCCcccC
Q psy14661        106 AGLEPLAETLEELWV--SYNYIEKTK------GIGVMRKLKVLYMSNNLVKE  149 (202)
Q Consensus       106 ~~~~~~~~~L~~L~l--~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~  149 (202)
                      .......+.|+.|++  +.|.++.-.      .+...++|+.|++++|.+.+
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            223333468999999  889987521      24566899999999998865

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.21  E-value=5.3e-07  Score=71.75  Aligned_cols=131  Identities=12%  Similarity=0.088  Sum_probs=89.6

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCC--CCCCCCcEEEccC--cc------ccccCCcc-
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGL--SGLKKLKVLSLAR--NN------IKSFAGLE-  109 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~--~~l~~L~~L~l~~--n~------l~~~~~~~-  109 (202)
                      .+++|+.|.++++.--.++. +. +++|+.|++..+.++.-  ..+  ..+++|++|.+..  +.      +..+.... 
T Consensus       170 ~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             TCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred             cCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence            35689999999885223444 43 88999999998888753  333  3678899998753  22      11111111 


Q ss_pred             -cccCCCcEEEcccccCCCC-C----CCCCCCCccEEEccCCcccCccc---cccCCCCCcceEEEecCCcCCCC
Q psy14661        110 -PLAETLEELWVSYNYIEKT-K----GIGVMRKLKVLYMSNNLVKEWAE---FVKLGECPSLIDLVFCGNPLVEG  175 (202)
Q Consensus       110 -~~~~~L~~L~l~~n~l~~~-~----~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~l~l~~n~~~~~  175 (202)
                       ..+++|+.|++.+|.++.. +    ....+++|++|+++.|.+.+...   ...+..+++|+.|+++.|.+++.
T Consensus       248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence             2358999999999987641 1    22467899999999999887421   12234578999999999987653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.10  E-value=1.2e-06  Score=66.68  Aligned_cols=79  Identities=20%  Similarity=0.310  Sum_probs=56.1

Q ss_pred             CCCCCcEEEccCccccccCC---cccccCCCcEEEcccccCCCCCCCCCCC--CccEEEccCCcccC-ccc-----cccC
Q psy14661         88 GLKKLKVLSLARNNIKSFAG---LEPLAETLEELWVSYNYIEKTKGIGVMR--KLKVLYMSNNLVKE-WAE-----FVKL  156 (202)
Q Consensus        88 ~l~~L~~L~l~~n~l~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~L~~L~l~~n~l~~-~~~-----~~~~  156 (202)
                      .+++|++|++++|.++.++.   ....+++|+.|+|++|.++++..+..+.  +|+.|++.+|.++. ++.     ...+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence            56788899999998887653   3345688999999999988775444444  89999999998874 110     1234


Q ss_pred             CCCCcceEEE
Q psy14661        157 GECPSLIDLV  166 (202)
Q Consensus       157 ~~l~~L~~l~  166 (202)
                      ..+++|+.|+
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            5677777776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.06  E-value=1.6e-06  Score=61.78  Aligned_cols=57  Identities=18%  Similarity=0.177  Sum_probs=36.2

Q ss_pred             CCccEEEccCCc-ccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccc
Q psy14661        135 RKLKVLYMSNNL-VKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKK  194 (202)
Q Consensus       135 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~  194 (202)
                      ++|++|++++|. +++ .++..+..+++|++|++++++-.+..  .......-..+|+++.
T Consensus       114 ~~L~~L~Ls~C~~ITD-~Gl~~L~~~~~L~~L~L~~c~~Itd~--gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          114 KSMLEMEIISCGNVTD-KGIIALHHFRNLKYLFLSDLPGVKEK--EKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             HHCCEEEEESCTTCCH-HHHHHGGGCTTCCEEEEESCTTCCCH--HHHHHHHHHHCTTCEE
T ss_pred             CCCCEEEcCCCCcCCH-HHHHHHhcCCCCCEEECCCCCCCCch--HHHHHHHHHHCCCcEE
Confidence            467888888874 666 34556677888888888888643331  1222334466777653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.90  E-value=1.9e-06  Score=61.32  Aligned_cols=84  Identities=20%  Similarity=0.275  Sum_probs=61.5

Q ss_pred             CCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCcc-ccccC--Cccc---ccCCCcEEEccccc-CCC--CCCCCCCC
Q psy14661         67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNN-IKSFA--GLEP---LAETLEELWVSYNY-IEK--TKGIGVMR  135 (202)
Q Consensus        67 l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~-l~~~~--~~~~---~~~~L~~L~l~~n~-l~~--~~~~~~~~  135 (202)
                      -..|+.|+++++.|+..  ..+..+++|++|++++|. +++..  .+..   .+++|+.|++++|. +++  +..+..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            34788999999888865  777888999999999984 66421  2222   12479999999985 765  23466789


Q ss_pred             CccEEEccCCc-ccCc
Q psy14661        136 KLKVLYMSNNL-VKEW  150 (202)
Q Consensus       136 ~L~~L~l~~n~-l~~~  150 (202)
                      +|+.|++++|. +++.
T Consensus       140 ~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             TCCEEEEESCTTCCCH
T ss_pred             CCCEEECCCCCCCCch
Confidence            99999999985 6653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.49  E-value=0.001  Score=53.18  Aligned_cols=104  Identities=10%  Similarity=0.205  Sum_probs=70.8

Q ss_pred             hccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEcccccCCCCC--CCCCCCCccE
Q psy14661         64 LAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKV  139 (202)
Q Consensus        64 l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~  139 (202)
                      |..+..|+.+.+..+..+-- ..|..+..|+.+.+. +.++.++ ..+..+.+|+.+.+..+ ++.++  .|..+.+|+.
T Consensus       261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             eeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence            66777888887765443322 667778888888885 3455555 34444578888888654 55554  4788888888


Q ss_pred             EEccCCcccCccccccCCCCCcceEEEecCCc
Q psy14661        140 LYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP  171 (202)
Q Consensus       140 L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~  171 (202)
                      +.+..+ ++.++. ..+.+|.+|+.+.+.++.
T Consensus       339 i~ip~s-v~~I~~-~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          339 IAIPSS-VTKIPE-SAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             EEECTT-CCBCCG-GGGTTCTTCCEEEESSCH
T ss_pred             EEECcc-cCEEhH-hHhhCCCCCCEEEECCce
Confidence            888654 555543 578888888888887764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.48  E-value=0.00085  Score=53.16  Aligned_cols=121  Identities=14%  Similarity=0.197  Sum_probs=70.9

Q ss_pred             CCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEc
Q psy14661         45 SEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWV  120 (202)
Q Consensus        45 ~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l  120 (202)
                      ..++.+.+..+ +..++.. +..+..|+.+.+..+ ++.+  ..|..+..|+.+.+..+ ++.++ ..+..+.+|+.+.+
T Consensus       217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l  293 (379)
T 4h09_A          217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM  293 (379)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred             cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence            33445444332 3333332 556667777766554 4444  55666667777776543 44333 23344467777777


Q ss_pred             ccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCC
Q psy14661        121 SYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGN  170 (202)
Q Consensus       121 ~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n  170 (202)
                      .++.++.++  .|..+.+|+.+.+..+ ++.++. ..+.+|.+|+.+.+..+
T Consensus       294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV-YAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCCCCCCTT
T ss_pred             cccccceehhhhhcCCCCCCEEEcCcc-ccEEHH-HHhhCCCCCCEEEECCc
Confidence            777776665  4777777777777654 444443 46677777777776443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.46  E-value=0.0017  Score=51.37  Aligned_cols=122  Identities=15%  Similarity=0.188  Sum_probs=83.8

Q ss_pred             hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEcccccCCCCC--CCCCCCCcc
Q psy14661         64 LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYNYIEKTK--GIGVMRKLK  138 (202)
Q Consensus        64 l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~  138 (202)
                      +..+.+++.+.+..+ ++.+  ..+..+..|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ ++.++  .|..+.+|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            445566666666443 3333  56777888888888765 44444 33444568888887543 55555  488899999


Q ss_pred             EEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        139 VLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       139 ~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      .+.+.++.+..++. ..+.+|.+|+.+.+..+ +......      .+..+++|+.+.
T Consensus       290 ~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~------aF~~C~~L~~i~  339 (379)
T 4h09_A          290 KVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKTIQVY------AFKNCKALSTIS  339 (379)
T ss_dssp             EEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCEECTT------TTTTCTTCCCCC
T ss_pred             cccccccccceehh-hhhcCCCCCCEEEcCcc-ccEEHHH------HhhCCCCCCEEE
Confidence            99999888887754 68889999999999644 5555422      566778887665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.39  E-value=0.0008  Score=53.73  Aligned_cols=132  Identities=12%  Similarity=0.121  Sum_probs=87.8

Q ss_pred             HhhhhhhcCCCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-Cc
Q psy14661         33 LKKWEEENGIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GL  108 (202)
Q Consensus        33 ~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~  108 (202)
                      +.......+.....++.+.+..+. ..++.. +..+++|+.+.+. +.++.+  ..|..+.+|+.+.+..+ ++.+. ..
T Consensus       253 v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a  329 (394)
T 4gt6_A          253 VARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDA  329 (394)
T ss_dssp             EEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred             ceEcccceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence            333444445666778888886543 344443 8889999999996 556666  77889999999999865 55555 34


Q ss_pred             ccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcC
Q psy14661        109 EPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL  172 (202)
Q Consensus       109 ~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~  172 (202)
                      +..|.+|+.+.+..+ ++.++  .|.++.+|+.+.+.++....    ..+..+.+|+.+.+..+.+
T Consensus       330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~----~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW----NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH----HTCBCCCCC----------
T ss_pred             hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh----hhhhccCCCCEEEeCCCCE
Confidence            445689999999654 77776  58999999999999875432    2456778888888765543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.35  E-value=0.00098  Score=53.22  Aligned_cols=80  Identities=13%  Similarity=0.150  Sum_probs=41.7

Q ss_pred             CCCCCCCcEEEccCccccccC-CcccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcc
Q psy14661         86 LSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSL  162 (202)
Q Consensus        86 ~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L  162 (202)
                      |..+.+|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ ++.++  .|.++.+|+.+.+..+ +..++. ..+.+|.+|
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~L  368 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA-NAFQGCINL  368 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT-TTBTTCTTC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH-HHhhCCCCC
Confidence            444555555555433 33333 22333456666666432 44443  3566666666666554 444432 456666666


Q ss_pred             eEEEecC
Q psy14661        163 IDLVFCG  169 (202)
Q Consensus       163 ~~l~l~~  169 (202)
                      +.+.+..
T Consensus       369 ~~i~lp~  375 (394)
T 4fs7_A          369 KKVELPK  375 (394)
T ss_dssp             CEEEEEG
T ss_pred             CEEEECC
Confidence            6666643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.31  E-value=0.00063  Score=45.82  Aligned_cols=52  Identities=15%  Similarity=0.171  Sum_probs=23.7

Q ss_pred             EEEccCcccc--ccCCcccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcc
Q psy14661         94 VLSLARNNIK--SFAGLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLV  147 (202)
Q Consensus        94 ~L~l~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l  147 (202)
                      .++-+++.++  .+|....  ++++.|+|++|.++.++  .|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4444445444  4442211  24555555555555544  244444555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.29  E-value=0.0014  Score=52.34  Aligned_cols=121  Identities=17%  Similarity=0.091  Sum_probs=74.5

Q ss_pred             hccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccCCCCC--CCCCCCCccEE
Q psy14661         64 LAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKVL  140 (202)
Q Consensus        64 l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L  140 (202)
                      +..+..++.+.+..+...-- ..|..+..++.+......+..  ..+..+.+|+.+.+..+ ++.++  .|..+.+|+.+
T Consensus       249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i  325 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI  325 (394)
T ss_dssp             TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccccceeEEcCCCcceeeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence            44445555555544322211 445555555555554443321  22334468888887654 55555  48888999999


Q ss_pred             EccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       141 ~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      .+..+ ++.++. ..+.+|.+|+.+.+..+ +......      .+..+++|+.++
T Consensus       326 ~lp~~-v~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~------aF~~C~~L~~i~  372 (394)
T 4fs7_A          326 DLPYL-VEEIGK-RSFRGCTSLSNINFPLS-LRKIGAN------AFQGCINLKKVE  372 (394)
T ss_dssp             CCCTT-CCEECT-TTTTTCTTCCEECCCTT-CCEECTT------TBTTCTTCCEEE
T ss_pred             EeCCc-ccEEhH-HhccCCCCCCEEEECcc-ccEehHH------HhhCCCCCCEEE
Confidence            99754 666544 57889999999999766 5555432      567788887765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.28  E-value=9.7e-05  Score=53.49  Aligned_cols=111  Identities=15%  Similarity=0.143  Sum_probs=73.1

Q ss_pred             hhhccCCCCCEEECCCC-CCcCc------cCCCCCCCCcEEEccCccccccC-----CcccccCCCcEEEcccccCCCCC
Q psy14661         62 SSLAVLTNCEKLSLSTN-MIEKI------NGLSGLKKLKVLSLARNNIKSFA-----GLEPLAETLEELWVSYNYIEKTK  129 (202)
Q Consensus        62 ~~l~~l~~L~~L~l~~n-~i~~~------~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~L~~L~l~~n~l~~~~  129 (202)
                      ..+..-+.|+.|++++| .|...      ..+..-..|+.|++++|.+....     ........|+.|+|+.|.|+.-.
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            33566789999999985 77642      45566678999999999887521     12223367888999988887532


Q ss_pred             ------CCCCCCCccEEEccCC---cccCcc---ccccCCCCCcceEEEecCCcC
Q psy14661        130 ------GIGVMRKLKVLYMSNN---LVKEWA---EFVKLGECPSLIDLVFCGNPL  172 (202)
Q Consensus       130 ------~~~~~~~L~~L~l~~n---~l~~~~---~~~~~~~l~~L~~l~l~~n~~  172 (202)
                            .+..-+.|+.|++++|   .+.+-.   ....+..-+.|..++++.|..
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                  3556667888888765   334311   113445566788888875543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.14  E-value=0.00013  Score=52.76  Aligned_cols=105  Identities=16%  Similarity=0.114  Sum_probs=64.9

Q ss_pred             CCCCceEEEccCc-cccc-----cchhhccCCCCCEEECCCCCCcCc------cCCCCCCCCcEEEccCccccccC----
Q psy14661         43 PISEAKEVGLQMQ-FIEK-----MDSSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFA----  106 (202)
Q Consensus        43 ~~~~l~~L~l~~~-~i~~-----l~~~l~~l~~L~~L~l~~n~i~~~------~~~~~l~~L~~L~l~~n~l~~~~----  106 (202)
                      .-++|++|+|+++ .|+.     +...+...+.|+.|+|++|.|.+.      ..+..-+.|++|++++|.|+.-.    
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3456888888875 5543     445577778888888888888754      23334567888888888886411    


Q ss_pred             -CcccccCCCcEEEcccccC---CCC-----C-CCCCCCCccEEEccCCcc
Q psy14661        107 -GLEPLAETLEELWVSYNYI---EKT-----K-GIGVMRKLKVLYMSNNLV  147 (202)
Q Consensus       107 -~~~~~~~~L~~L~l~~n~l---~~~-----~-~~~~~~~L~~L~l~~n~l  147 (202)
                       ........|+.|++++|..   ..-     . .+..-++|+.|+++.|.+
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence             1122224688888876532   211     1 134456777888776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.96  E-value=0.0018  Score=43.57  Aligned_cols=58  Identities=12%  Similarity=0.009  Sum_probs=38.0

Q ss_pred             EEEcccccCC--CCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661        117 ELWVSYNYIE--KTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       117 ~L~l~~n~l~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      .++.+++.++  .+|. .-.++|+.|+|++|.|+.++. ..+..+++|+.|+|.+|++.+.+
T Consensus        12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~CdC   71 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCDC   71 (130)
T ss_dssp             EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCSG
T ss_pred             EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeeccC
Confidence            5666666666  6663 123467777777777777653 45566777777777777777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	2e-24
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-17
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-10
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	5e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 92.8 bits (229), Expect = 2e-24
 Identities = 87/182 (47%), Positives = 115/182 (63%), Gaps = 7/182 (3%)

Query: 24  LAKP-NLKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMI 80
           +AK   +KDA++ +EE   +  +EA++V L      IEKMD++L+ L  C+ L+LSTN I
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 81  EKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVL 140
           EKI+ LSG++ L++LSL RN IK    L+ +A+TLEELW+SYN I    GI  +  L+VL
Sbjct: 61  EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL 120

Query: 141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLV----EGMDDPLYKSEVKKRLPNLKKLD 196
           YMSNN +  W E  KL     L DL+  GNPL     E      Y+ EV KRLPNLKKLD
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

Query: 197 GE 198
           G 
Sbjct: 181 GM 182

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (178), Expect = 3e-17
 Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 6/155 (3%)

Query: 52  LQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPL 111
           L+ + +E++   ++   +  + +L    +     L       VL+   +   +   +E  
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEEN 63

Query: 112 AETLEELWVSYNYIEKTKGI----GVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVF 167
              L  L +S N + +   +         LK+L +S N +K   E  K  +   L +L  
Sbjct: 64  IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGLKLEELWL 122

Query: 168 CGNPLVEGM-DDPLYKSEVKKRLPNLKKLDGEVLP 201
            GN L +   D   Y S +++R P L +LDG  LP
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELP 157

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.5 bits (159), Expect = 1e-14
 Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 3/123 (2%)

Query: 73  LSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIG 132
           L L+   +  +  L  L  +  L L+ N +++          LE L  S N +E   G+ 
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 133 VMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNL 192
            + +L+ L + NN +++ A    L  CP L+ L   GN L +   +   +  + + LP++
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ---EEGIQERLAEMLPSV 119

Query: 193 KKL 195
             +
Sbjct: 120 SSI 122

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.8 bits (146), Expect = 9e-12
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 67  LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
           L N   L+L  N I  I+ +S L KL+ L  A N +   + L  L   +  L   +N I 
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANL-TNINWLSAGHNQIS 364

Query: 127 KTKGIGVMRKLKVLYMSNN 145
               +  + ++  L +++ 
Sbjct: 365 DLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.2 bits (129), Expect = 2e-09
 Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 32/156 (20%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLA--------- 112
            +LA LTN   L L+ N I  +  LSGL KL  L L  N I + + L  L          
Sbjct: 235 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 294

Query: 113 ------------ETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECP 160
                       + L  L + +N I     +  + KL+ L+ +NN V + +    L    
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS---LANLT 351

Query: 161 SLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
           ++  L    N + +    PL        L  + +L 
Sbjct: 352 NINWLSAGHNQISD--LTPL------ANLTRITQLG 379

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 9e-09
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 65  AVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNY 124
             L    K  L    +      + L ++  L   R  IKS  G+E L   L ++  S N 
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYL-NNLTQINFSNNQ 77

Query: 125 IEKTKGIGVMRKLKVLYMSNNLVKEW 150
           +     +  + KL  + M+NN + + 
Sbjct: 78  LTDITPLKNLTKLVDILMNNNQIADI 103

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 8e-08
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           S ++ LT  ++L  + N +  ++ L+ L  +  LS   N I     L  L   + +L ++
Sbjct: 323 SPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANL-TRITQLGLN 381

Query: 122 YN 123
             
Sbjct: 382 DQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 63  SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122
           S   L     L      I+ I+G+  L  L  ++ + N +     L+ L   L ++ ++ 
Sbjct: 39  SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNL-TKLVDILMNN 97

Query: 123 NY 124
           N 
Sbjct: 98  NQ 99

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 36/153 (23%), Positives = 55/153 (35%), Gaps = 38/153 (24%)

Query: 68  TNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS------ 121
           TN ++LSL+ N ++ I  L+ L  L  L LA N I + A L  L + L EL +       
Sbjct: 219 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKLGANQISN 277

Query: 122 ----------------YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDL 165
                            N +E    I  ++ L  L +  N + + +          L  L
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV---SSLTKLQRL 334

Query: 166 VFCGNPLVEGMDDPLYKSEVK--KRLPNLKKLD 196
            F  N +          S+V     L N+  L 
Sbjct: 335 FFANNKV----------SDVSSLANLTNINWLS 357

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 80  IEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKV 139
           I +I   + L +     L + N+        L + +  L      I+   G+  +  L  
Sbjct: 12  INQIFTDTALAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDGVEYLNNLTQ 70

Query: 140 LYMSNNLVKEWAEFVKLGECPSLIDLVFC 168
           +  SNN +    +   L     L+D++  
Sbjct: 71  INFSNNQLT---DITPLKNLTKLVDILMN 96

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 5e-05
 Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 1/93 (1%)

Query: 67  LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
           LTN E L  + N I  I  L  L  L  LSL  N +K    L  L   L +L ++ N I 
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQIS 254

Query: 127 KTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGEC 159
               +  + KL  L +  N +   +    L   
Sbjct: 255 NLAPLSGLTKLTELKLGANQISNISPLAGLTAL 287

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 5e-10
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 21/145 (14%)

Query: 75  LSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVM 134
           L+  +IE+    +   + + L L    I     L    +  + +  S N I K  G  ++
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62

Query: 135 RKLKVLYMSNNLVKE------------------WAEFVKLGECPSLIDLVFCGNPLVEGM 176
           R+LK L ++NN +                        V+LG+   L  L       +   
Sbjct: 63  RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 122

Query: 177 DD---PLYKSEVKKRLPNLKKLDGE 198
                  Y+  V  ++P ++ LD +
Sbjct: 123 PVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 67  LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
           L N  K++   + +      + L  +  LS     + +  G++ L   L  L +  N I 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNN-LIGLELKDNQIT 76

Query: 127 KTKGIGVMRKLKVLYMSNNLVKEW 150
               +  + K+  L +S N +K  
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNV 100

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 80  IEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKV 139
           I  I     L     ++  ++N+        L + +  L      +   +G+  +  L  
Sbjct: 9   INVIFPDPALANAIKIAAGKSNVTDTVTQADL-DGITTLSAFGTGVTTIEGVQYLNNLIG 67

Query: 140 LYMSNNLVKEWAEFVKLGEC 159
           L + +N + + A    L + 
Sbjct: 68  LELKDNQITDLAPLKNLTKI 87

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 86  LSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSN 144
           L+ L KL  L    N I   + L  L   L E+ +  N I     +     L ++ ++N
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASL-PNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 53  QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLA 112
                    + LA L+    L    N I  I+ L+ L  L  + L  N I   + L    
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANT- 216

Query: 113 ETLEELWVS 121
             L  + ++
Sbjct: 217 SNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 12/41 (29%), Positives = 15/41 (36%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNI 102
            + A L     LS     +  I G+  L  L  L L  N I
Sbjct: 35  VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 2e-06
 Identities = 16/78 (20%), Positives = 39/78 (50%), Gaps = 7/78 (8%)

Query: 67  LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
             + E+L++S N + ++   +   +L+ L  + N++     +  L + L++L V YN + 
Sbjct: 283 PPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAE---VPELPQNLKQLHVEYNPLR 337

Query: 127 KTKGIGVMRKLKVLYMSN 144
           +   I     ++ L M++
Sbjct: 338 EFPDI--PESVEDLRMNS 353

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 5e-06
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 67  LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
           L    K  L    +      + L ++  L   R  IKS  G+E L   L ++  S N + 
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN-LTQINFSNNQLT 75

Query: 127 KTKGIGVMR 135
               +  + 
Sbjct: 76  DITPLKNLT 84

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 78  NMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKL 137
             I +I   + L +     L + N+        L + +  L      I+   G+  +  L
Sbjct: 6   TPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDGVEYLNNL 64

Query: 138 KVLYMSNNLVKEWAEF 153
             +  SNN + +    
Sbjct: 65  TQINFSNNQLTDITPL 80

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 7e-06
 Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 63  SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122
           S        K +L    +      + L  +  +    ++IKS  G++ L   + +L+++ 
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL-PNVTKLFLNG 77

Query: 123 NYIEKTKGIGVMRKLKVLYMSNNLVKEW 150
           N +   K +  ++ L  L++  N VK+ 
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDL 105

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 12/91 (13%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 69  NCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKT 128
             E +++ T  I++I       +    +L + ++        L  +++++  + + I+  
Sbjct: 4   GSETITVPTP-IKQIFSDDAFAETIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSV 61

Query: 129 KGIGVMRKLKVLYMSNNLVKEWAEFVKLGEC 159
           +GI  +  +  L+++ N + +      L   
Sbjct: 62  QGIQYLPNVTKLFLNGNKLTDIKPLANLKNL 92

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 3e-04
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 62  SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSL 97
             LA LT  + L LS N I  +  L+GLK L VL L
Sbjct: 172 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 67  LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
           LT  + LSL  N I  I  L+GL KL+ L L++N+I     L  L + L+ L + 
Sbjct: 155 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL-KNLDVLELF 208

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 63  SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLE 109
                +    L +S   I  +   GL  LKKL+  S    N+K    LE
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLE 242

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 6e-04
 Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 69  NCEKLSLSTNMIEKING---LSGLKKLKVLSLARNNIKSFAGLEPLAE------TLEELW 119
           + + L +    +        L  L++ +V+ L    + + A  + ++        L EL 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELN 61

Query: 120 VSYNYI 125
           +  N +
Sbjct: 62  LRSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 0.002
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 64  LAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLE 116
           L +L  C+ + L    + +       + L     L  L+L  N +    G+  + + L+
Sbjct: 23  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD-VGVHCVLQGLQ 80

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 11/122 (9%)

Query: 68  TNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNI-----KSFAGLEPLAETLEELWV 120
            +   L L  N I +I       LK L  L L  N I      +FA L      LE L++
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV----KLERLYL 86

Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPL 180
           S N +++          ++    N + K             +++L           +   
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 181 YK 182
             
Sbjct: 147 QG 148

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 17/145 (11%), Positives = 39/145 (26%), Gaps = 2/145 (1%)

Query: 53  QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSF-AGLEPL 111
            ++     + +   +     + ++   I  I        L  L L  N I    A     
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKG 193

Query: 112 AETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP 171
              L +L +S+N I       +     +  +  N  K       L +   +  +    N 
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

Query: 172 LVEGMDDPLYKSEVKKRLPNLKKLD 196
           +     +         +  +   + 
Sbjct: 254 ISAIGSNDFCPPGYNTKKASYSGVS 278

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.89
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.83
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.78
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.63
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.62
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.59
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.58
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.57
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.55
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.53
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.42
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.4
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.38
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.35
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	99.2
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.18
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.99
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.96
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.9
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.79
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.64
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.51
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.45
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.42
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.09
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.79
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.75
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.04
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.93

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.89  E-value=1.4e-25  Score=163.28  Aligned_cols=179  Identities=48%  Similarity=0.763  Sum_probs=157.3

Q ss_pred             hcCc-cHHHHHhhhhhhcCCCCCCceEEEccCcc--ccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCc
Q psy14661         24 LAKP-NLKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARN  100 (202)
Q Consensus        24 ~~~~-~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n  100 (202)
                      |+++ ++.++++.|++..+.....++.+++++..  +..++..+..+++|+.|++++|.|+.++.+..+++|++|++++|
T Consensus         1 ~~~~tti~~~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N   80 (198)
T d1m9la_           1 MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRN   80 (198)
T ss_dssp             CCCCSCHHHHHHHHHHTTCCCCTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEE
T ss_pred             CCCcccHHHHHHHHHHHcCCcccccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccc
Confidence            4666 88999999999998888889999998764  78888889999999999999999999877889999999999999


Q ss_pred             cccccCCcccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCc--
Q psy14661        101 NIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD--  178 (202)
Q Consensus       101 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~--  178 (202)
                      .++.++.....+++|+.|++++|.++.++.+..+++|+.|++++|.+++++.+..+..+++|+.|++++|++....+.  
T Consensus        81 ~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~  160 (198)
T d1m9la_          81 LIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN  160 (198)
T ss_dssp             EECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhccccccccccCCCccceeecCCCccccCccccc
Confidence            999988766666789999999999998877788899999999999999987667789999999999999998654322  


Q ss_pred             --hhhHHHHHHhCCCcccccCccCCC
Q psy14661        179 --PLYKSEVKKRLPNLKKLDGEVLPE  202 (202)
Q Consensus       179 --~~~~~~~~~~l~~L~~L~~~~~~~  202 (202)
                        ..|+..++..+|+|+.||+.+|++
T Consensus       161 ~~~~~r~~vi~~lp~L~~LD~~~I~~  186 (198)
T d1m9la_         161 ATSEYRIEVVKRLPNLKKLDGMPVDV  186 (198)
T ss_dssp             THHHHHHHHHHHCSSCCEESSGGGTT
T ss_pred             chhhHHHHHHHHCCCcCEeCCccCCH
Confidence              456777899999999999999874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.1e-21  Score=134.62  Aligned_cols=135  Identities=22%  Similarity=0.263  Sum_probs=99.7

Q ss_pred             hccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccCCCCCC--CCCCCCccEE
Q psy14661         64 LAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKG--IGVMRKLKVL  140 (202)
Q Consensus        64 l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L  140 (202)
                      +..+..+++|++++|.|+.+ ..+..+++|++|++++|.++.++++.. +++|+.|++++|.++.++.  +..+++|++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~-l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL-LRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCC-CSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCccc-CcchhhhhcccccccCCCccccccccccccc
Confidence            44455666666666666666 223455666677777776666654333 3677777777777776652  4567888999


Q ss_pred             EccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccCccCCC
Q psy14661        141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVLPE  202 (202)
Q Consensus       141 ~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~  202 (202)
                      ++++|.+.+++.+..+..+++|+++++.+|+++..+   .|+..++..+|+|++||+.+|++
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~---~~r~~~i~~lp~L~~LD~~~i~~  151 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK---HYRLYVIYKVPQVRVLDFQKVKL  151 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST---THHHHHHHHCTTCSEETTEECCH
T ss_pred             eeccccccccccccccccccccchhhcCCCcccccc---chHHHHHHHCCCcCeeCCCCCCH
Confidence            999999888877677889999999999999998874   67777899999999999998863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=5.1e-19  Score=118.82  Aligned_cols=122  Identities=24%  Similarity=0.342  Sum_probs=101.9

Q ss_pred             CEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCc
Q psy14661         71 EKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEW  150 (202)
Q Consensus        71 ~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~  150 (202)
                      +.|++++|.++.++.+..+++|++|++++|.++.+|.....+++|+.|++++|.+++++++..+++|+++++++|.++++
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~   80 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS   80 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCC
Confidence            46888888888877788888899999999999888754555688999999999999888888999999999999999988


Q ss_pred             cccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccc
Q psy14661        151 AEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKL  195 (202)
Q Consensus       151 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L  195 (202)
                      +.+..+..+++|+.+++++|+++...   .++..+...+|+++.|
T Consensus        81 ~~~~~l~~~~~L~~L~l~~N~i~~~~---~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          81 AAIQPLVSCPRLVLLNLQGNSLCQEE---GIQERLAEMLPSVSSI  122 (124)
T ss_dssp             STTGGGGGCTTCCEEECTTSGGGGSS---SCTTHHHHHCTTCSEE
T ss_pred             CCchhhcCCCCCCEEECCCCcCCcCc---cHHHHHHHHCcCcceE
Confidence            77677888999999999999998764   3444477778888765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1e-17  Score=126.50  Aligned_cols=147  Identities=20%  Similarity=0.114  Sum_probs=97.9

Q ss_pred             CCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEc
Q psy14661         42 IPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWV  120 (202)
Q Consensus        42 ~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l  120 (202)
                      ..+++++.|+|++|.+..++.. |..+++|+.|++++|.++.++.+..+++|++|++++|+++..+.....+++|+.|++
T Consensus        28 ~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEEC
T ss_pred             CcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3456788888888888887754 788888888888888888776667778888888888887765544444466666666


Q ss_pred             ccccCCCC------------------------C--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCC
Q psy14661        121 SYNYIEKT------------------------K--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE  174 (202)
Q Consensus       121 ~~n~l~~~------------------------~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~  174 (202)
                      ++|.+..+                        +  .+..++.++.+++++|+++.++. ..+..+++|++|++++|.++.
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~L~~  186 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYT  186 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCC
T ss_pred             cccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCc-cccccccccceeecccCCCcc
Confidence            66655443                        3  13345566666666666665432 455666777777777777776


Q ss_pred             CCCchhhHHHHHHhCCCccccc
Q psy14661        175 GMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       175 ~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      .+..       +..+++|+.|+
T Consensus       187 lp~~-------~~~~~~L~~L~  201 (266)
T d1p9ag_         187 IPKG-------FFGSHLLPFAF  201 (266)
T ss_dssp             CCTT-------TTTTCCCSEEE
T ss_pred             cChh-------HCCCCCCCEEE
Confidence            5421       23456666544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.4e-17  Score=120.57  Aligned_cols=139  Identities=24%  Similarity=0.311  Sum_probs=75.8

Q ss_pred             CCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccc
Q psy14661         44 ISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYN  123 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  123 (202)
                      +++|+.|++++|.+..+++ +..+++|+.|++++|.+..++.+..++.|+.++++++.+...+.+.. +++|+.|++++|
T Consensus        61 l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~n  138 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN-LTNLNRLELSSN  138 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTT-CTTCSEEECCSS
T ss_pred             CCCcCcCccccccccCccc-ccCCcccccccccccccccccccccccccccccccccccccccccch-hhhhHHhhhhhh
Confidence            3445555555555444443 44555555555555555444444455555555555555444333222 255666666666


Q ss_pred             cCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccc
Q psy14661        124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKL  195 (202)
Q Consensus       124 ~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L  195 (202)
                      .+..++.+..+++++.+++.+|.+++++   .++++++|++|++++|++++..        .++.+++|+.|
T Consensus       139 ~l~~~~~l~~~~~L~~L~l~~n~l~~l~---~l~~l~~L~~L~ls~N~i~~i~--------~l~~L~~L~~L  199 (199)
T d2omxa2         139 TISDISALSGLTSLQQLNFSSNQVTDLK---PLANLTTLERLDISSNKVSDIS--------VLAKLTNLESL  199 (199)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG--------GGGGCTTCSEE
T ss_pred             hhcccccccccccccccccccccccCCc---cccCCCCCCEEECCCCCCCCCc--------cccCCCCCCcC
Confidence            6655555555666666666666665543   2556666777777777666543        34556666543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.4e-17  Score=121.63  Aligned_cols=141  Identities=28%  Similarity=0.349  Sum_probs=96.1

Q ss_pred             CCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccc
Q psy14661         44 ISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYN  123 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  123 (202)
                      +++|++|++++|.+..+++ +..+++|+.|++++|.++.++.+..+++|+.|++.+|.+..++.+... +.++.++++.|
T Consensus        67 l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~~l~~l-~~l~~l~~~~n  144 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL-PQLESLYLGNN  144 (210)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGC-TTCCEEECCSS
T ss_pred             CCCCCEEeCCCccccCccc-cccCcccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            5556666666666666554 556666666666666666665566666666666666666554443333 56666777666


Q ss_pred             cCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661        124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG  197 (202)
Q Consensus       124 ~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~  197 (202)
                      .+++.+.+..+++|+.+++.+|.+++++   .+..+++|+.|++++|.+++.+        .+..+++|++|+-
T Consensus       145 ~l~~~~~~~~l~~L~~l~l~~n~l~~i~---~l~~l~~L~~L~Ls~N~i~~l~--------~l~~l~~L~~L~L  207 (210)
T d1h6ta2         145 KITDITVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLR--------ALAGLKNLDVLEL  207 (210)
T ss_dssp             CCCCCGGGGGCTTCSEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCBCG--------GGTTCTTCSEEEE
T ss_pred             cccccccccccccccccccccccccccc---cccCCCCCCEEECCCCCCCCCh--------hhcCCCCCCEEEc
Confidence            6666555666788888888888887754   3677888999999999887764        3577888888763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=2.7e-17  Score=119.07  Aligned_cols=142  Identities=23%  Similarity=0.281  Sum_probs=124.2

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY  122 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  122 (202)
                      ++.+++.|+++++++..++. +..+++|++|++++|.++.+..+..+++|++|++++|.+..++.+.. ++.|+.|++++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~-l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~-l~~L~~L~l~~  115 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLAN-LTNLTGLTLFN  115 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTT-CTTCSEEECCS
T ss_pred             HhcCCCEEECCCCCCCCccc-cccCCCcCcCccccccccCcccccCCccccccccccccccccccccc-ccccccccccc
Confidence            35679999999999998865 88999999999999999999779999999999999999988776544 48999999999


Q ss_pred             ccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661        123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG  197 (202)
Q Consensus       123 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~  197 (202)
                      |....++.+..+++|+.+++++|.+..++   .+..+++++.+++.+|.+++..        .++.+++|++|+-
T Consensus       116 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~l~~~~~L~~L~l~~n~l~~l~--------~l~~l~~L~~L~l  179 (199)
T d2omxa2         116 NQITDIDPLKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLNFSSNQVTDLK--------PLANLTTLERLDI  179 (199)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCCG--------GGTTCTTCCEEEC
T ss_pred             cccccccccchhhhhHHhhhhhhhhcccc---cccccccccccccccccccCCc--------cccCCCCCCEEEC
Confidence            99988877888999999999999988764   4788999999999999998875        3577899998773

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.7e-16  Score=118.60  Aligned_cols=142  Identities=20%  Similarity=0.219  Sum_probs=100.7

Q ss_pred             HhhhhhhcCCCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc-cCCCCC----------------------
Q psy14661         33 LKKWEEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGL----------------------   89 (202)
Q Consensus        33 ~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l----------------------   89 (202)
                      +....+.....+++|+.|++++|.+..++. +..+++|+.|++++|.++.. ..+..+                      
T Consensus        43 i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  121 (266)
T d1p9ag_          43 LYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR  121 (266)
T ss_dssp             CSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTT
T ss_pred             CCCcCHHHhhcccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccceeeccccc
Confidence            344444444556667777777777666654 45666667777766666554 334444                      


Q ss_pred             --CCCcEEEccCccccccC-CcccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceE
Q psy14661         90 --KKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLID  164 (202)
Q Consensus        90 --~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  164 (202)
                        .++++|++.+|.++.++ .....++.++.+++++|.++.++  .+..+++|++|++++|.++.++.  .+..+++|+.
T Consensus       122 ~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~--~~~~~~~L~~  199 (266)
T d1p9ag_         122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--GFFGSHLLPF  199 (266)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCCCSE
T ss_pred             cccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccCh--hHCCCCCCCE
Confidence              44555555555555444 23334578999999999999887  38889999999999999998765  6778899999


Q ss_pred             EEecCCcCCCCCC
Q psy14661        165 LVFCGNPLVEGMD  177 (202)
Q Consensus       165 l~l~~n~~~~~~~  177 (202)
                      +++.+|++.+.+.
T Consensus       200 L~L~~Np~~CdC~  212 (266)
T d1p9ag_         200 AFLHGNPWLCNCE  212 (266)
T ss_dssp             EECCSCCBCCSGG
T ss_pred             EEecCCCCCCCcc
Confidence            9999999998764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=2.1e-16  Score=113.61  Aligned_cols=128  Identities=20%  Similarity=0.203  Sum_probs=107.5

Q ss_pred             ceEEEccCccccccchhhccCCCCCEEECCCCCCcCc---cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEccc
Q psy14661         47 AKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSY  122 (202)
Q Consensus        47 l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~---~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~  122 (202)
                      .++++.+++++..+|..+.  +++++|++++|.|+..   ..|..+++|++|++++|.+..++ ..+..+++|+.|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4578888899989988653  6899999999999763   66788999999999999998766 4455558999999999


Q ss_pred             ccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661        123 NYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD  177 (202)
Q Consensus       123 n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  177 (202)
                      |.++.++  .|.++++|+.|++++|.++.++. ..+..+++|+++++.+|++.+.+.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~-~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCH-HHhcCCcccccccccccccccccc
Confidence            9999886  48899999999999999998754 678889999999999999987753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.7e-17  Score=114.04  Aligned_cols=125  Identities=22%  Similarity=0.273  Sum_probs=108.0

Q ss_pred             CCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCC-cccccCCCcEEEc
Q psy14661         42 IPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELWV  120 (202)
Q Consensus        42 ~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l  120 (202)
                      .++.++++|++++|.|..++..+..+++|+.|++++|.|+.++.+..+++|++|++++|.++.++. ....+++|+.|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            467789999999999999987778899999999999999999889999999999999999998874 4455689999999


Q ss_pred             ccccCCCCC---CCCCCCCccEEEccCCcccCccc--cccCCCCCcceEEE
Q psy14661        121 SYNYIEKTK---GIGVMRKLKVLYMSNNLVKEWAE--FVKLGECPSLIDLV  166 (202)
Q Consensus       121 ~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~l~  166 (202)
                      ++|.+++++   .+..+++|+++++.+|.++..+.  ...+..+++|++|+
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            999998876   36788999999999999987653  23456788999887

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=4e-16  Score=113.74  Aligned_cols=141  Identities=24%  Similarity=0.308  Sum_probs=122.9

Q ss_pred             CCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccc
Q psy14661         44 ISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYN  123 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  123 (202)
                      +.+++.|++++|.+..++. +..+++|++|++++|.++++..+..+++|++|++++|+++.++.+.. +++|+.|++++|
T Consensus        45 L~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~-l~~L~~L~l~~~  122 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKD-LKKLKSLSLEHN  122 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTT-CTTCCEEECTTS
T ss_pred             hcCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCccccccCccccccccccccccccccccc-cccccccccccc
Confidence            4578999999999988876 88999999999999999999778889999999999999998876544 489999999999


Q ss_pred             cCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661        124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG  197 (202)
Q Consensus       124 ~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~  197 (202)
                      .+..++.+..++.++.+++.+|.+++..   ....+++|+.+++.+|.+++..        .+..+++|+.|+-
T Consensus       123 ~~~~~~~l~~l~~l~~l~~~~n~l~~~~---~~~~l~~L~~l~l~~n~l~~i~--------~l~~l~~L~~L~L  185 (210)
T d1h6ta2         123 GISDINGLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIV--------PLAGLTKLQNLYL  185 (210)
T ss_dssp             CCCCCGGGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCG--------GGTTCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccc---cccccccccccccccccccccc--------cccCCCCCCEEEC
Confidence            9988888888999999999999988754   4567899999999999998764        3567899998774

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=5.2e-16  Score=103.88  Aligned_cols=116  Identities=20%  Similarity=0.264  Sum_probs=96.4

Q ss_pred             eEEEccCccccccchhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccCC
Q psy14661         48 KEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE  126 (202)
Q Consensus        48 ~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~  126 (202)
                      +.|++++|.+..++. +..+++|++|++++|.++.+ +.+..+++|++|++++|.++.++.+.. +++|+.+++++|.++
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~-l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN-LPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTT-CSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCcccc-ccccCeEECCCCccC
Confidence            468999999998876 89999999999999999998 678999999999999999999876544 489999999999999


Q ss_pred             CCCC---CCCCCCccEEEccCCcccCcccc--ccCCCCCcceEE
Q psy14661        127 KTKG---IGVMRKLKVLYMSNNLVKEWAEF--VKLGECPSLIDL  165 (202)
Q Consensus       127 ~~~~---~~~~~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~l  165 (202)
                      +++.   +..+++|+.+++++|.++..+..  .....+++|+.+
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8763   67789999999999999865432  122335555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.2e-15  Score=112.87  Aligned_cols=147  Identities=20%  Similarity=0.229  Sum_probs=76.7

Q ss_pred             CCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc---------------------------cCCCCCCCCcE
Q psy14661         43 PISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI---------------------------NGLSGLKKLKV   94 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~---------------------------~~~~~l~~L~~   94 (202)
                      .++.++.|+|++|.+..+|+. |..+++|++|++++|.+..+                           ..|..+++|++
T Consensus        30 ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCE
Confidence            445566777777776666653 66666777777766654321                           12334555666


Q ss_pred             EEccCccccccC-CcccccCCCcEEEcccccCCCCC--------------------------CCCCCCCccEEEccCCcc
Q psy14661         95 LSLARNNIKSFA-GLEPLAETLEELWVSYNYIEKTK--------------------------GIGVMRKLKVLYMSNNLV  147 (202)
Q Consensus        95 L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~--------------------------~~~~~~~L~~L~l~~n~l  147 (202)
                      |++++|.+..++ .......+|+.+++++|.++.++                          .|..+++|+.+++.+|.+
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l  189 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccc
Confidence            666666554433 12222234455555555444443                          234444455555555544


Q ss_pred             cCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661        148 KEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD  196 (202)
Q Consensus       148 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~  196 (202)
                      +++. +..+..+++|+++++++|.+....+.      .++.+++|++|+
T Consensus       190 ~~i~-~~~f~~l~~L~~L~l~~N~i~~~~~~------~~~~~~~L~~L~  231 (284)
T d1ozna_         190 AHVH-PHAFRDLGRLMTLYLFANNLSALPTE------ALAPLRALQYLR  231 (284)
T ss_dssp             CEEC-TTTTTTCTTCCEEECCSSCCSCCCHH------HHTTCTTCCEEE
T ss_pred             cccC-hhHhhhhhhccccccccccccccccc------ccccccccCEEE
Confidence            4432 23455555556666666665555422      455566666554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=6.1e-15  Score=115.77  Aligned_cols=142  Identities=25%  Similarity=0.318  Sum_probs=103.2

Q ss_pred             CCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCC----------------
Q psy14661         44 ISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAG----------------  107 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------  107 (202)
                      ..+++.|++++|.+..++. +..+++|+.+++.+|.++++..+..+++|++++++++.++.++.                
T Consensus       218 ~~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~  296 (384)
T d2omza2         218 LTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ  296 (384)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred             cCCCCEEECCCCCCCCcch-hhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccccc
Confidence            4567777777777776654 66777777777777777776556666677777776666554321                


Q ss_pred             -----cccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhH
Q psy14661        108 -----LEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYK  182 (202)
Q Consensus       108 -----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  182 (202)
                           ....+++++.|++++|.+++++.+..+++|+.|++++|.+++++   .+..+++|++|++++|.+++..      
T Consensus       297 l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~---~l~~l~~L~~L~l~~N~l~~l~------  367 (384)
T d2omza2         297 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS---SLANLTNINWLSAGHNQISDLT------  367 (384)
T ss_dssp             CSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCBCG------
T ss_pred             cccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCCh---hHcCCCCCCEEECCCCcCCCCh------
Confidence                 12233678888888888888777778889999999999888754   4677889999999999888775      


Q ss_pred             HHHHHhCCCcccccC
Q psy14661        183 SEVKKRLPNLKKLDG  197 (202)
Q Consensus       183 ~~~~~~l~~L~~L~~  197 (202)
                        .+..+++|+.|+-
T Consensus       368 --~l~~l~~L~~L~L  380 (384)
T d2omza2         368 --PLANLTRITQLGL  380 (384)
T ss_dssp             --GGTTCTTCSEEEC
T ss_pred             --hhccCCCCCEeeC
Confidence              2567888887764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=1.4e-15  Score=109.26  Aligned_cols=137  Identities=19%  Similarity=0.144  Sum_probs=107.0

Q ss_pred             hhcCCCCCCceEEEccCccccc-cch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-Cccccc
Q psy14661         38 EENGIPISEAKEVGLQMQFIEK-MDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLA  112 (202)
Q Consensus        38 ~~~~~~~~~l~~L~l~~~~i~~-l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~  112 (202)
                      ..+...+.+++.|+|++|.+.. ++. .|..+++|+.|++++|.+..+  ..+..+++|++|++++|+++.++ ..+..+
T Consensus        22 ~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l  101 (192)
T d1w8aa_          22 EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL  101 (192)
T ss_dssp             SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTC
T ss_pred             ccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCC
Confidence            3344456789999999999865 443 388999999999999999987  78888999999999999999887 445556


Q ss_pred             CCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661        113 ETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       113 ~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      ++|+.|++++|.++.++  .|..+++|+++++++|.+.....+.++.  ..++...+..+.+.+..
T Consensus       102 ~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_         102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCS
T ss_pred             CcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCC
Confidence            89999999999999987  4889999999999999887544332322  12444445555555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.3e-14  Score=106.69  Aligned_cols=144  Identities=19%  Similarity=0.245  Sum_probs=114.0

Q ss_pred             CCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCC--------------
Q psy14661         42 IPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAG--------------  107 (202)
Q Consensus        42 ~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------  107 (202)
                      ..+++|+.|++++|.+..+++ +..+++++.+++++|.++.++.+..+++|+++.++++.......              
T Consensus        60 ~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~  138 (227)
T d1h6ua2          60 QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL  138 (227)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred             hcCCCCcEeecCCceeecccc-ccccccccccccccccccccccccccccccccccccccccccchhccccchhhhhchh
Confidence            358889999999999888776 88899999999999999888778888888888888776543221              


Q ss_pred             -------cccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchh
Q psy14661        108 -------LEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPL  180 (202)
Q Consensus       108 -------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~  180 (202)
                             ....+++|+.|++++|.++..+.+..+++|+.|++++|.+++++.   +.++++|++|++++|++++..    
T Consensus       139 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~---l~~l~~L~~L~Ls~N~lt~i~----  211 (227)
T d1h6ua2         139 NQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS----  211 (227)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCG----
T ss_pred             hhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCChh---hcCCCCCCEEECcCCcCCCCc----
Confidence                   112235788888888888777777888899999999998887643   677888999999999988775    


Q ss_pred             hHHHHHHhCCCcccccC
Q psy14661        181 YKSEVKKRLPNLKKLDG  197 (202)
Q Consensus       181 ~~~~~~~~l~~L~~L~~  197 (202)
                          .+..+++|+.|+-
T Consensus       212 ----~l~~l~~L~~L~l  224 (227)
T d1h6ua2         212 ----PLANTSNLFIVTL  224 (227)
T ss_dssp             ----GGTTCTTCCEEEE
T ss_pred             ----ccccCCCCCEEEe
Confidence                3567888888763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.1e-14  Score=108.96  Aligned_cols=139  Identities=18%  Similarity=0.183  Sum_probs=116.6

Q ss_pred             hhcCCCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccC
Q psy14661         38 EENGIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAE  113 (202)
Q Consensus        38 ~~~~~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~  113 (202)
                      +.....+++++.|++++|.+..++.. +...++|+.+++++|.++.+  ..|..+++|++|++++|.++.++ ..+..++
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~  177 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH  177 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccc
Confidence            34455677899999999987776654 77788899999999999887  56788899999999999998876 4445558


Q ss_pred             CCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661        114 TLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD  177 (202)
Q Consensus       114 ~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  177 (202)
                      +|+.+++++|.++.++  .|..+++|++|++++|.+.+++. ..+..+++|+++++++|++.+.++
T Consensus       178 ~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~-~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEECSGG
T ss_pred             ccchhhhhhccccccChhHhhhhhhcccccccccccccccc-cccccccccCEEEecCCCCCCCcc
Confidence            9999999999998864  58899999999999999998654 678899999999999999998764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=4.7e-14  Score=103.60  Aligned_cols=143  Identities=20%  Similarity=0.248  Sum_probs=117.5

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY  122 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  122 (202)
                      ++.+++.|++.+|++.+++. +..+++|+.|++++|.++.+..+..+++++++++.+|.++.++.+... +.|+.+.+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l-~~L~~l~l~~  116 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGL-QSIKTLDLTS  116 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTC-TTCCEEECTT
T ss_pred             HcCCcCEEECCCCCCCcchh-HhcCCCCcEeecCCceeecccccccccccccccccccccccccccccc-cccccccccc
Confidence            35679999999999999964 899999999999999999987789999999999999999887765544 7899999988


Q ss_pred             ccCCCCC----------------------CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchh
Q psy14661        123 NYIEKTK----------------------GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPL  180 (202)
Q Consensus       123 n~l~~~~----------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~  180 (202)
                      +....++                      .+...++|+.+++.+|.+.++.   .+.++++|+.+++++|.+++..    
T Consensus       117 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~Ls~n~l~~l~----  189 (227)
T d1h6ua2         117 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT---PLANLSKLTTLKADDNKISDIS----  189 (227)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG----
T ss_pred             ccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch---hhcccccceecccCCCccCCCh----
Confidence            7755421                      1345667899999999887654   3678999999999999998764    


Q ss_pred             hHHHHHHhCCCcccccCc
Q psy14661        181 YKSEVKKRLPNLKKLDGE  198 (202)
Q Consensus       181 ~~~~~~~~l~~L~~L~~~  198 (202)
                          .++.+++|++|+-+
T Consensus       190 ----~l~~l~~L~~L~Ls  203 (227)
T d1h6ua2         190 ----PLASLPNLIEVHLK  203 (227)
T ss_dssp             ----GGGGCTTCCEEECT
T ss_pred             ----hhcCCCCCCEEECc
Confidence                35788999988743

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=4.7e-14  Score=110.61  Aligned_cols=142  Identities=26%  Similarity=0.338  Sum_probs=115.2

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY  122 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  122 (202)
                      .++++..+++++|.+..+++ +..+++|+.+++++|.++.++.+..+++++++++.+|.++.++.+... ++|+.|+++.
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~l~~  272 (384)
T d2omza2         195 KLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL-TKLTELKLGA  272 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTC-TTCSEEECCS
T ss_pred             cccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCccccc-ccCCEeeccC
Confidence            46679999999999888776 677899999999999999988888899999999999999887765444 7899999988


Q ss_pred             ccCCCCCC----------------------CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchh
Q psy14661        123 NYIEKTKG----------------------IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPL  180 (202)
Q Consensus       123 n~l~~~~~----------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~  180 (202)
                      +.++.++.                      +..+++++.+++++|.+++++   .+..+++|+.|++++|.++..+    
T Consensus       273 ~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~---~l~~l~~L~~L~L~~n~l~~l~----  345 (384)
T d2omza2         273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSDVS----  345 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSSCCCCCG----
T ss_pred             cccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCc---ccccCCCCCEEECCCCCCCCCh----
Confidence            87765432                      334567778888888777654   3677889999999999998764    


Q ss_pred             hHHHHHHhCCCcccccC
Q psy14661        181 YKSEVKKRLPNLKKLDG  197 (202)
Q Consensus       181 ~~~~~~~~l~~L~~L~~  197 (202)
                          .++.+++|++|+-
T Consensus       346 ----~l~~l~~L~~L~l  358 (384)
T d2omza2         346 ----SLANLTNINWLSA  358 (384)
T ss_dssp             ----GGGGCTTCCEEEC
T ss_pred             ----hHcCCCCCCEEEC
Confidence                4577999998774

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.42  E-value=1.8e-12  Score=98.91  Aligned_cols=62  Identities=29%  Similarity=0.351  Sum_probs=49.6

Q ss_pred             CCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS  104 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~  104 (202)
                      -+.+++.|++++|.++.+|+. |..+++|++|++++|.+..+  ..|..++.|++|++++|+++.
T Consensus        29 l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~   93 (305)
T d1xkua_          29 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE   93 (305)
T ss_dssp             CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB
T ss_pred             CCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc
Confidence            456788888888888888864 88888888888888888877  457788888888888776654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.40  E-value=1.8e-12  Score=98.83  Aligned_cols=131  Identities=21%  Similarity=0.257  Sum_probs=105.2

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEE
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELW  119 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~  119 (202)
                      .+++++.+++.+|.+..+|..  .+++++.|++++|.+...  ..+..++.+++|++++|.++.++ .....+++|+.|+
T Consensus       148 ~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         148 GMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             GCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             cccccCccccccCCccccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeee
Confidence            456788899999888777764  367899999999988876  66788889999999999988765 4555568999999


Q ss_pred             cccccCCCCC-CCCCCCCccEEEccCCcccCccc-----cccCCCCCcceEEEecCCcCCCC
Q psy14661        120 VSYNYIEKTK-GIGVMRKLKVLYMSNNLVKEWAE-----FVKLGECPSLIDLVFCGNPLVEG  175 (202)
Q Consensus       120 l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~l~l~~n~~~~~  175 (202)
                      +++|.++.+| ++..+++|+.|++++|+++.++.     ........+|+.+++.+|++...
T Consensus       226 L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         226 LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             CCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             cccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccC
Confidence            9999999987 58889999999999999887653     12334567899999999998643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.38  E-value=5e-13  Score=102.46  Aligned_cols=59  Identities=22%  Similarity=0.262  Sum_probs=45.9

Q ss_pred             CceEEEccCcccc---ccchhhccCCCCCEEECCC-CCCcC-c-cCCCCCCCCcEEEccCccccc
Q psy14661         46 EAKEVGLQMQFIE---KMDSSLAVLTNCEKLSLST-NMIEK-I-NGLSGLKKLKVLSLARNNIKS  104 (202)
Q Consensus        46 ~l~~L~l~~~~i~---~l~~~l~~l~~L~~L~l~~-n~i~~-~-~~~~~l~~L~~L~l~~n~l~~  104 (202)
                      +++.|+|+++.+.   .+|+.+..+++|++|++++ |.+.+ + ..+..+++|++|++++|.+..
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~  115 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG  115 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccc
Confidence            5888899888754   5777888888898888875 67774 4 667888888888888877664

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.35  E-value=4.8e-13  Score=102.54  Aligned_cols=107  Identities=20%  Similarity=0.244  Sum_probs=68.1

Q ss_pred             CCCEEECCCCCCcCc----cCCCCCCCCcEEEccC-cccc-ccCCcccccCCCcEEEcccccCCCCC--CCCCCCCccEE
Q psy14661         69 NCEKLSLSTNMIEKI----NGLSGLKKLKVLSLAR-NNIK-SFAGLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKVL  140 (202)
Q Consensus        69 ~L~~L~l~~n~i~~~----~~~~~l~~L~~L~l~~-n~l~-~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L  140 (202)
                      .++.|+++++.+++.    ..+..+++|++|++++ |+++ .+|..+..+++|++|++++|.+..++  .+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            566777777766642    4566777777777765 5555 46655555567777777777766543  25566677777


Q ss_pred             EccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661        141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM  176 (202)
Q Consensus       141 ~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  176 (202)
                      ++..|.+... .+..+..++.++++++.+|.+....
T Consensus       131 ~l~~N~~~~~-~p~~l~~l~~L~~l~l~~n~l~~~i  165 (313)
T d1ogqa_         131 DFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAI  165 (313)
T ss_dssp             ECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred             cccccccccc-CchhhccCcccceeecccccccccc
Confidence            7777765542 2245666677777777777665444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.6e-13  Score=91.94  Aligned_cols=101  Identities=18%  Similarity=0.192  Sum_probs=56.9

Q ss_pred             ceEEEccCccccccchhhccCCCCCEEECCCC-CCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEccc
Q psy14661         47 AKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTN-MIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSY  122 (202)
Q Consensus        47 l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n-~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~  122 (202)
                      .+.++..++++.++|..+..++++++|++.+| .++.+  ..|..+++|+.|++++|+++.++ ..+..+++|+.|++++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34466666666666666666666666666544 36655  45666666666666666666554 2233335566666666


Q ss_pred             ccCCCCC-CCCCCCCccEEEccCCcc
Q psy14661        123 NYIEKTK-GIGVMRKLKVLYMSNNLV  147 (202)
Q Consensus       123 n~l~~~~-~~~~~~~L~~L~l~~n~l  147 (202)
                      |.++.+| +.-....|+.|++++|.+
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCcccChhhhccccccccccCCCcc
Confidence            6665554 211222455555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.2e-12  Score=93.58  Aligned_cols=151  Identities=15%  Similarity=0.121  Sum_probs=86.4

Q ss_pred             CCCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc---cCCCCCCCCcEEEccC-ccccccC-CcccccCC
Q psy14661         41 GIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLAR-NNIKSFA-GLEPLAET  114 (202)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~---~~~~~l~~L~~L~l~~-n~l~~~~-~~~~~~~~  114 (202)
                      ..-++++++|++++|.+..+|.. |..+++|++|++++|.+...   ..|..++.++++.+.. |.+...+ ..+..+++
T Consensus        25 ~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~  104 (242)
T d1xwdc1          25 SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN  104 (242)
T ss_dssp             SCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTT
T ss_pred             CCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccc
Confidence            33456788899999888888875 78889999999988876543   3344455555555432 3333322 22233345


Q ss_pred             CcEEEcccccCCCCC---------------------------CCCCC-CCccEEEccCCc--------------------
Q psy14661        115 LEELWVSYNYIEKTK---------------------------GIGVM-RKLKVLYMSNNL--------------------  146 (202)
Q Consensus       115 L~~L~l~~n~l~~~~---------------------------~~~~~-~~L~~L~l~~n~--------------------  146 (202)
                      |+.+++++|.+...+                           .+..+ ..++.+++.+|.                    
T Consensus       105 L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l  184 (242)
T d1xwdc1         105 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS  184 (242)
T ss_dssp             CCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECT
T ss_pred             ccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccc
Confidence            555555554443221                           01111 133334444444                    


Q ss_pred             ----ccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccCc
Q psy14661        147 ----VKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGE  198 (202)
Q Consensus       147 ----l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~~  198 (202)
                          ++.++. ..+.++++|++|++++|+++..++.      .+..+++|+.++-.
T Consensus       185 ~~n~l~~l~~-~~f~~l~~L~~L~Ls~N~l~~l~~~------~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         185 DNNNLEELPN-DVFHGASGPVILDISRTRIHSLPSY------GLENLKKLRARSTY  233 (242)
T ss_dssp             TCTTCCCCCT-TTTTTSCCCSEEECTTSCCCCCCSS------SCTTCCEEESSSEE
T ss_pred             cccccccccH-HHhcCCCCCCEEECCCCcCCccCHH------HHcCCcccccCcCC
Confidence                333322 3356677888888888888776543      45667777666543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=9.4e-15  Score=105.39  Aligned_cols=129  Identities=29%  Similarity=0.351  Sum_probs=103.0

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCC-CCCCCCcEEEccCccccccCCcccccCCCcEEEcc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGL-SGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS  121 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  121 (202)
                      .+++++.|++++|.|..++. +..+++|+.|++++|.|+.++.+ ..+++|++|++++|.++.++.+.. +++|+.|+++
T Consensus        46 ~L~~L~~L~Ls~n~I~~i~~-l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~-l~~L~~L~L~  123 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEK-LVNLRVLYMS  123 (198)
T ss_dssp             HTTTCCEEECSEEEESCCCC-HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHH-HHHSSEEEES
T ss_pred             cccccceeECcccCCCCccc-ccCCccccChhhcccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            46789999999999999975 89999999999999999988443 345679999999999998765444 4799999999


Q ss_pred             cccCCCCC---CCCCCCCccEEEccCCcccCcccc---------ccCCCCCcceEEEecCCcCCCC
Q psy14661        122 YNYIEKTK---GIGVMRKLKVLYMSNNLVKEWAEF---------VKLGECPSLIDLVFCGNPLVEG  175 (202)
Q Consensus       122 ~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~~---------~~~~~l~~L~~l~l~~n~~~~~  175 (202)
                      +|.++.++   .+..+++|+.|++++|++......         ..+..+++|+.||  +.+++..
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~~~  187 (198)
T d1m9la_         124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD  187 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGTTT
T ss_pred             cchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCCHH
Confidence            99999875   478899999999999988653321         1145688899887  4555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.9e-11  Score=83.48  Aligned_cols=110  Identities=17%  Similarity=0.141  Sum_probs=89.3

Q ss_pred             cCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCc-cccccC-CcccccCCCcEEEcccccCCCCC--CCCCCCCccEE
Q psy14661         66 VLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARN-NIKSFA-GLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKVL  140 (202)
Q Consensus        66 ~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L  140 (202)
                      .+.....++..++.+... ..+..+++++.|++.+| .++.++ ..+..+++|+.|++++|.++.++  .|..+++|+.|
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            344566788888888877 77888999999999876 488777 34455689999999999999986  48899999999


Q ss_pred             EccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661        141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD  177 (202)
Q Consensus       141 ~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  177 (202)
                      ++++|.++.++. ..+. ..+|++|++.+|++.+.+.
T Consensus        86 ~Ls~N~l~~l~~-~~~~-~~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          86 NLSFNALESLSW-KTVQ-GLSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             ECCSSCCSCCCS-TTTC-SCCCCEEECCSSCCCCCGG
T ss_pred             eccCCCCcccCh-hhhc-cccccccccCCCcccCCch
Confidence            999999998765 3343 4479999999999987763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.9e-13  Score=93.73  Aligned_cols=91  Identities=31%  Similarity=0.412  Sum_probs=74.9

Q ss_pred             cccCCCcEEEcccccCCCCCC----CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCc-hhhHHH
Q psy14661        110 PLAETLEELWVSYNYIEKTKG----IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD-PLYKSE  184 (202)
Q Consensus       110 ~~~~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~  184 (202)
                      ..++.|+.|++++|.++.++.    +..+++|+.|++++|.+++++.+..++. ..|+.+++.+|+++..... ..|+..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~-~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG-LKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTT-CCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhc-cccceeecCCCCcCcCcccchhHHHH
Confidence            345789999999999988753    4568999999999999999877655554 4699999999999876532 578888


Q ss_pred             HHHhCCCcccccCccCC
Q psy14661        185 VKKRLPNLKKLDGEVLP  201 (202)
Q Consensus       185 ~~~~l~~L~~L~~~~~~  201 (202)
                      ++..+|+|+.|||.+++
T Consensus       141 i~~~~P~L~~LDg~~v~  157 (162)
T d1koha1         141 IRERFPKLLRLDGHELP  157 (162)
T ss_dssp             HHTTSTTCCEETTEECC
T ss_pred             HHHHCCCCCEECcCCCc
Confidence            99999999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.18  E-value=3e-10  Score=87.25  Aligned_cols=97  Identities=29%  Similarity=0.311  Sum_probs=81.1

Q ss_pred             CceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccC
Q psy14661         46 EAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYI  125 (202)
Q Consensus        46 ~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l  125 (202)
                      +++.|++++++++.+|+.   .++|++|++++|.|+.++..  +.+|+.|++.+|.++.++..   .+.|++|++++|.+
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l  110 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQL  110 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCC
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhh---cccccccccccccc
Confidence            478999999999999863   57899999999999988432  45899999999998877643   24699999999999


Q ss_pred             CCCCCCCCCCCccEEEccCCcccCc
Q psy14661        126 EKTKGIGVMRKLKVLYMSNNLVKEW  150 (202)
Q Consensus       126 ~~~~~~~~~~~L~~L~l~~n~l~~~  150 (202)
                      +.+|.++.+++|+++++.+|.+...
T Consensus       111 ~~lp~~~~l~~L~~L~l~~~~~~~~  135 (353)
T d1jl5a_         111 EKLPELQNSSFLKIIDVDNNSLKKL  135 (353)
T ss_dssp             SSCCCCTTCTTCCEEECCSSCCSCC
T ss_pred             ccccchhhhccceeecccccccccc
Confidence            9999888899999999998877653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.5e-11  Score=89.44  Aligned_cols=150  Identities=19%  Similarity=0.176  Sum_probs=89.6

Q ss_pred             CCCCceEEEccCccccc--cchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCc-cccc--cCCcccccCCC
Q psy14661         43 PISEAKEVGLQMQFIEK--MDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARN-NIKS--FAGLEPLAETL  115 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~--l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n-~l~~--~~~~~~~~~~L  115 (202)
                      .+.+++.|+++++.+..  ++..+..+++|++|+++++.+++.  ..+..+++|++|+++++ .++.  +......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            34467888888776432  444467778888888888777653  55666677777777774 4442  11222334566


Q ss_pred             cEEEccccc-CCC------------------------------CCC-CCCCCCccEEEccCCc-ccCccccccCCCCCcc
Q psy14661        116 EELWVSYNY-IEK------------------------------TKG-IGVMRKLKVLYMSNNL-VKEWAEFVKLGECPSL  162 (202)
Q Consensus       116 ~~L~l~~n~-l~~------------------------------~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L  162 (202)
                      +.|++++|. +++                              +.. ...+++|++|++++|. +++ ..+..+..+++|
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd-~~~~~l~~~~~L  202 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYL  202 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-GGGGGGGGCTTC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCc-hhhhhhcccCcC
Confidence            666666542 211                              000 1235678888887764 554 344566777888


Q ss_pred             eEEEecCC-cCCCCCCchhhHHHHHHhCCCcccccCcc
Q psy14661        163 IDLVFCGN-PLVEGMDDPLYKSEVKKRLPNLKKLDGEV  199 (202)
Q Consensus       163 ~~l~l~~n-~~~~~~~~~~~~~~~~~~l~~L~~L~~~~  199 (202)
                      ++|+++++ .+++....      .++.+++|+.|+-..
T Consensus       203 ~~L~L~~C~~i~~~~l~------~L~~~~~L~~L~l~~  234 (284)
T d2astb2         203 QHLSLSRCYDIIPETLL------ELGEIPTLKTLQVFG  234 (284)
T ss_dssp             CEEECTTCTTCCGGGGG------GGGGCTTCCEEECTT
T ss_pred             CEEECCCCCCCChHHHH------HHhcCCCCCEEeeeC
Confidence            88888775 44433211      346678888776443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=9.8e-10  Score=80.55  Aligned_cols=125  Identities=15%  Similarity=0.188  Sum_probs=91.1

Q ss_pred             eEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccc-cC-CcccccCCCcEEEccc-
Q psy14661         48 KEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-FA-GLEPLAETLEELWVSY-  122 (202)
Q Consensus        48 ~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~~~~~~~~L~~L~l~~-  122 (202)
                      +.++.++.++..+|+.+.  +++++|++++|.|+.+  ..|..+++|++|++++|.+.. ++ ..+..++.++++.+.. 
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            567778778888887653  5899999999999988  568999999999999998865 33 3344457888888765 


Q ss_pred             ccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCC
Q psy14661        123 NYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE  174 (202)
Q Consensus       123 n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~  174 (202)
                      |.+...+  .+..+++|+++++.+|.+...+.......++.+..+...++.+..
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~  142 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT  142 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCE
T ss_pred             ccccccccccccccccccccccchhhhccccccccccccccccccccccccccc
Confidence            5666554  478899999999999988765543334444445444444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.8e-10  Score=85.88  Aligned_cols=149  Identities=19%  Similarity=0.211  Sum_probs=94.7

Q ss_pred             CCCceEEEccCcc-ccc--cchhhccCCCCCEEECCCC-CCcCc---cCCC-CCCCCcEEEccCc--cccc--cCCcccc
Q psy14661         44 ISEAKEVGLQMQF-IEK--MDSSLAVLTNCEKLSLSTN-MIEKI---NGLS-GLKKLKVLSLARN--NIKS--FAGLEPL  111 (202)
Q Consensus        44 ~~~l~~L~l~~~~-i~~--l~~~l~~l~~L~~L~l~~n-~i~~~---~~~~-~l~~L~~L~l~~n--~l~~--~~~~~~~  111 (202)
                      .++|+.|+++++. +++  +......+++|++|+++++ .+++.   ..+. ..+.|+.|+++++  .++.  +..+...
T Consensus        94 ~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~  173 (284)
T d2astb2          94 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  173 (284)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccc
Confidence            4567777777654 432  2233455677777777764 34332   1122 2356778887764  2332  2233445


Q ss_pred             cCCCcEEEccccc-CCC--CCCCCCCCCccEEEccCC-cccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHH
Q psy14661        112 AETLEELWVSYNY-IEK--TKGIGVMRKLKVLYMSNN-LVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKK  187 (202)
Q Consensus       112 ~~~L~~L~l~~n~-l~~--~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~  187 (202)
                      +++|++|++++|. +++  +..+..+++|++|++++| .+++ ..+..++++++|+.+++.++ +++..     ......
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~-~~l~~L~~~~~L~~L~l~~~-~~d~~-----l~~l~~  246 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-ETLLELGEIPTLKTLQVFGI-VPDGT-----LQLLKE  246 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTS-SCTTC-----HHHHHH
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCCh-HHHHHHhcCCCCCEEeeeCC-CCHHH-----HHHHHH
Confidence            6899999999865 553  335778899999999996 5665 44567788999999999887 43332     223557


Q ss_pred             hCCCcccccCccC
Q psy14661        188 RLPNLKKLDGEVL  200 (202)
Q Consensus       188 ~l~~L~~L~~~~~  200 (202)
                      .+|+|+. +...+
T Consensus       247 ~lp~L~i-~~~~l  258 (284)
T d2astb2         247 ALPHLQI-NCSHF  258 (284)
T ss_dssp             HSTTSEE-SCCCS
T ss_pred             hCccccc-cCccC
Confidence            7898863 44444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.79  E-value=7.2e-08  Score=73.53  Aligned_cols=120  Identities=17%  Similarity=0.205  Sum_probs=83.1

Q ss_pred             CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661         43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY  122 (202)
Q Consensus        43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  122 (202)
                      .+++++.|++++|.++++|..   ..+|+.|++.+|.++.++.+.  +.|++|++++|.+..++... .+++|+.|++++
T Consensus        56 ~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n~l~~lp~~~-~l~~L~~L~l~~  129 (353)
T d1jl5a_          56 LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPELQ-NSSFLKIIDVDN  129 (353)
T ss_dssp             CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCCCT-TCTTCCEEECCS
T ss_pred             CCCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhhc--cccccccccccccccccchh-hhccceeecccc
Confidence            456899999999999999874   468999999999998875432  46999999999999888654 458999999999


Q ss_pred             ccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCC
Q psy14661        123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLV  173 (202)
Q Consensus       123 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~  173 (202)
                      +.+...+.  ....+..+.+..+......   .+..++.++.+.+.+|...
T Consensus       130 ~~~~~~~~--~~~~l~~l~~~~~~~~~~~---~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         130 NSLKKLPD--LPPSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             SCCSCCCC--CCTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCS
T ss_pred             cccccccc--ccccccchhhccccccccc---cccccccceeccccccccc
Confidence            88776542  1233444554444433321   2344455555555544433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.64  E-value=8.5e-09  Score=79.41  Aligned_cols=107  Identities=16%  Similarity=0.143  Sum_probs=57.0

Q ss_pred             CCCCCcEEEccCccccc------cCCcccccCCCcEEEcccccCCCC-----C-CCCCCCCccEEEccCCcccCcccc--
Q psy14661         88 GLKKLKVLSLARNNIKS------FAGLEPLAETLEELWVSYNYIEKT-----K-GIGVMRKLKVLYMSNNLVKEWAEF--  153 (202)
Q Consensus        88 ~l~~L~~L~l~~n~l~~------~~~~~~~~~~L~~L~l~~n~l~~~-----~-~~~~~~~L~~L~l~~n~l~~~~~~--  153 (202)
                      ..+.++.|++++|.++.      +......+++|+.|++++|.++..     . .+...++|+.|++++|.+++.+..  
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            34556667776666653      112223345677777777766431     1 245566777777777776653211  


Q ss_pred             -ccCC--CCCcceEEEecCCcCCCCCCchhhHHHHH-HhCCCccccc
Q psy14661        154 -VKLG--ECPSLIDLVFCGNPLVEGMDDPLYKSEVK-KRLPNLKKLD  196 (202)
Q Consensus       154 -~~~~--~l~~L~~l~l~~n~~~~~~~~~~~~~~~~-~~l~~L~~L~  196 (202)
                       ..+.  ..+.|++|++++|.++...  .......+ ..+++|++|+
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~--~~~l~~~l~~~~~~L~~L~  308 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDA--VRTLKTVIDEKMPDLLFLE  308 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHH--HHHHHHHHHHHCTTCCEEE
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHH--HHHHHHHHHccCCCCCEEE
Confidence             1111  2356777777777765432  11122222 3566676654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.51  E-value=6e-08  Score=74.50  Aligned_cols=133  Identities=19%  Similarity=0.134  Sum_probs=98.0

Q ss_pred             CCCceEEEccCcccc-----ccchhhccCCCCCEEECCCCCCcCc-------cCCCCCCCCcEEEccCccccc-----cC
Q psy14661         44 ISEAKEVGLQMQFIE-----KMDSSLAVLTNCEKLSLSTNMIEKI-------NGLSGLKKLKVLSLARNNIKS-----FA  106 (202)
Q Consensus        44 ~~~l~~L~l~~~~i~-----~l~~~l~~l~~L~~L~l~~n~i~~~-------~~~~~l~~L~~L~l~~n~l~~-----~~  106 (202)
                      ...++.+.+++|.++     .+...+..++.++.++++.|.++..       ..+..+++|++|++++|.++.     +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            456888888888754     3444477889999999999998742       457788999999999999864     22


Q ss_pred             CcccccCCCcEEEcccccCCCCC------CCC--CCCCccEEEccCCcccCccc---cccC-CCCCcceEEEecCCcCCC
Q psy14661        107 GLEPLAETLEELWVSYNYIEKTK------GIG--VMRKLKVLYMSNNLVKEWAE---FVKL-GECPSLIDLVFCGNPLVE  174 (202)
Q Consensus       107 ~~~~~~~~L~~L~l~~n~l~~~~------~~~--~~~~L~~L~l~~n~l~~~~~---~~~~-~~l~~L~~l~l~~n~~~~  174 (202)
                      .....+++|+.|++++|.+++..      .+.  ....|+.|++++|.+.....   ...+ ..++.|+.+++++|.+..
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            23344579999999999987531      122  34689999999999876221   1222 246789999999999977


Q ss_pred             CC
Q psy14661        175 GM  176 (202)
Q Consensus       175 ~~  176 (202)
                      ..
T Consensus       317 ~~  318 (344)
T d2ca6a1         317 ED  318 (344)
T ss_dssp             TS
T ss_pred             cc
Confidence            54

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.7e-08  Score=78.43  Aligned_cols=133  Identities=21%  Similarity=0.145  Sum_probs=77.8

Q ss_pred             CCCCCceEEEccCccccc-----cchhhccCCCCCEEECCCCCCcCc------cC-CCCCCCCcEEEccCccccccC---
Q psy14661         42 IPISEAKEVGLQMQFIEK-----MDSSLAVLTNCEKLSLSTNMIEKI------NG-LSGLKKLKVLSLARNNIKSFA---  106 (202)
Q Consensus        42 ~~~~~l~~L~l~~~~i~~-----l~~~l~~l~~L~~L~l~~n~i~~~------~~-~~~l~~L~~L~l~~n~l~~~~---  106 (202)
                      .....++.+++++|.+..     +...+...+.++.+++++|.++..      .. ......|+.++++++.++...   
T Consensus       252 ~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~  331 (460)
T d1z7xw1         252 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH  331 (460)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhh
Confidence            345668888888887543     222355677788888888877642      11 122345777777777665321   


Q ss_pred             --CcccccCCCcEEEcccccCCCC-----C-CC-CCCCCccEEEccCCcccCccc---cccCCCCCcceEEEecCCcCCC
Q psy14661        107 --GLEPLAETLEELWVSYNYIEKT-----K-GI-GVMRKLKVLYMSNNLVKEWAE---FVKLGECPSLIDLVFCGNPLVE  174 (202)
Q Consensus       107 --~~~~~~~~L~~L~l~~n~l~~~-----~-~~-~~~~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~l~l~~n~~~~  174 (202)
                        ......++|++|++++|.+++.     . .+ ...+.|+.|++++|.+++.+.   ...+..+++|++|++++|++++
T Consensus       332 l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         332 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             cccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence              1222234677777777776531     1 12 234567777777777765221   1234456677777777777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.4e-07  Score=74.20  Aligned_cols=104  Identities=17%  Similarity=0.292  Sum_probs=74.3

Q ss_pred             CceEEEccCcccccc--chhhccCCCCCEEECCCCCCcCc------cCCCCCCCCcEEEccCccccccC------Ccccc
Q psy14661         46 EAKEVGLQMQFIEKM--DSSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFA------GLEPL  111 (202)
Q Consensus        46 ~l~~L~l~~~~i~~l--~~~l~~l~~L~~L~l~~n~i~~~------~~~~~l~~L~~L~l~~n~l~~~~------~~~~~  111 (202)
                      +|+.|+++++.+...  ...+..+++++.|+|++|.++..      ..+..+++|++|++++|.++...      .+...
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            478889988887653  33367788888999999988743      34567788899999888876311      11112


Q ss_pred             cCCCcEEEcccccCCCCC------CCCCCCCccEEEccCCcccC
Q psy14661        112 AETLEELWVSYNYIEKTK------GIGVMRKLKVLYMSNNLVKE  149 (202)
Q Consensus       112 ~~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~  149 (202)
                      ..+|+.|++++|.+++..      .+..+++|+.|++++|.+++
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            246888899888887532      36677888889988888765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=6.7e-08  Score=66.50  Aligned_cols=79  Identities=20%  Similarity=0.190  Sum_probs=43.0

Q ss_pred             CCCCCcEEEccCccccccCCc---ccccCCCcEEEcccccCCCCCC--CCCCCCccEEEccCCcccCccc------cccC
Q psy14661         88 GLKKLKVLSLARNNIKSFAGL---EPLAETLEELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAE------FVKL  156 (202)
Q Consensus        88 ~l~~L~~L~l~~n~l~~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~------~~~~  156 (202)
                      .+++|++|++++|.++.++.+   ...+++|+.|++++|.+++++.  +.....|+.+++.+|.+.....      ...+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            455666666666666654422   2234666666677666666553  1123356667777776654211      0224


Q ss_pred             CCCCcceEEE
Q psy14661        157 GECPSLIDLV  166 (202)
Q Consensus       157 ~~l~~L~~l~  166 (202)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            4566666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.79  E-value=4.5e-06  Score=57.33  Aligned_cols=40  Identities=13%  Similarity=0.036  Sum_probs=21.3

Q ss_pred             CCCCCCccEEEccCCcccCcc------ccccCCCCCcceEEEecCC
Q psy14661        131 IGVMRKLKVLYMSNNLVKEWA------EFVKLGECPSLIDLVFCGN  170 (202)
Q Consensus       131 ~~~~~~L~~L~l~~n~l~~~~------~~~~~~~l~~L~~l~l~~n  170 (202)
                      +...++|+.|++.+|.+..++      ....+...+.|+.++++.+
T Consensus        96 L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            344556666666666544322      1133444566777776544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.75  E-value=8.9e-06  Score=55.76  Aligned_cols=104  Identities=16%  Similarity=0.102  Sum_probs=75.5

Q ss_pred             CCCCceEEEccCcc-ccc-----cchhhccCCCCCEEECCCCCCcCc------cCCCCCCCCcEEEccCccccccC----
Q psy14661         43 PISEAKEVGLQMQF-IEK-----MDSSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFA----  106 (202)
Q Consensus        43 ~~~~l~~L~l~~~~-i~~-----l~~~l~~l~~L~~L~l~~n~i~~~------~~~~~l~~L~~L~l~~n~l~~~~----  106 (202)
                      +.+++++|+|+++. ++.     +-..+...+.|+.|++++|.+...      ..+...+.|++|++++|.++.-.    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            45779999999754 432     444577889999999999999853      34556778999999999987511    


Q ss_pred             -CcccccCCCcEEEcccccCCCCC---------CCCCCCCccEEEccCCc
Q psy14661        107 -GLEPLAETLEELWVSYNYIEKTK---------GIGVMRKLKVLYMSNNL  146 (202)
Q Consensus       107 -~~~~~~~~L~~L~l~~n~l~~~~---------~~~~~~~L~~L~l~~n~  146 (202)
                       ......+.|++|++++|.+..+.         .+...++|+.++++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence             12233368999999998766542         13456788999887664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.04  E-value=8.8e-05  Score=50.39  Aligned_cols=109  Identities=16%  Similarity=0.119  Sum_probs=67.5

Q ss_pred             hccCCCCCEEECCC-CCCcCc------cCCCCCCCCcEEEccCccccccC-----CcccccCCCcEEEcccccCCCC---
Q psy14661         64 LAVLTNCEKLSLST-NMIEKI------NGLSGLKKLKVLSLARNNIKSFA-----GLEPLAETLEELWVSYNYIEKT---  128 (202)
Q Consensus        64 l~~l~~L~~L~l~~-n~i~~~------~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~L~~L~l~~n~l~~~---  128 (202)
                      ....+.|++|++++ +.++..      ..+...++|++|++++|.++.-.     ......+.++.+++..|.++.-   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            44668999999987 456532      45667788899999988876411     2222336788888888776542   


Q ss_pred             ---CCCCCCCCccEEEcc--CCcccCccc---cccCCCCCcceEEEecCCcC
Q psy14661        129 ---KGIGVMRKLKVLYMS--NNLVKEWAE---FVKLGECPSLIDLVFCGNPL  172 (202)
Q Consensus       129 ---~~~~~~~~L~~L~l~--~n~l~~~~~---~~~~~~l~~L~~l~l~~n~~  172 (202)
                         ..+...++|+.++++  .|.+.+...   ...+...+.|+.|++..+..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence               134556677765554  455554221   13344567778887765543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.93  E-value=0.00012  Score=49.68  Aligned_cols=104  Identities=17%  Similarity=0.067  Sum_probs=64.3

Q ss_pred             CCCceEEEccCcc-cc-----ccchhhccCCCCCEEECCCCCCcCc------cCCCCCCCCcEEEccCcccccc-----C
Q psy14661         44 ISEAKEVGLQMQF-IE-----KMDSSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSF-----A  106 (202)
Q Consensus        44 ~~~l~~L~l~~~~-i~-----~l~~~l~~l~~L~~L~l~~n~i~~~------~~~~~l~~L~~L~l~~n~l~~~-----~  106 (202)
                      .++++.|+++++. ++     .+-..+..++.|++|++++|.++..      ..+...+.++.+++++|.++.-     .
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            4578888888643 32     2444466778888888888887643      3455567788888888877531     1


Q ss_pred             CcccccCCCcEEEcc--cccCCCC-----C-CCCCCCCccEEEccCCcc
Q psy14661        107 GLEPLAETLEELWVS--YNYIEKT-----K-GIGVMRKLKVLYMSNNLV  147 (202)
Q Consensus       107 ~~~~~~~~L~~L~l~--~n~l~~~-----~-~~~~~~~L~~L~l~~n~l  147 (202)
                      ......+.++.+++.  .|.+..-     . .+...++|+.|++..+..
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            122223567765554  4555431     1 244667888888876643