Psyllid ID: psy14662

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
MTRSTYRPLRLHRPHENLHRPQGGDIAQVGTTLALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCTSAHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQILGRRSLSF
cccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccEEEEcccccEEEEEEEEEccccccccccccccccEEccccccccccccccccEEccccccEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEEccccEEEcccccccEEEEEEEcccccccccEEEEEEEEEEccccccccccccEEEEEEEEccccEEEEEEEEEc
cccccccccccccccccccccccccccccccEEEEEEEccccccccccccccHHHHHHEEEEcccccEEEEEcccccccccHHHHHHHHccccHccccccccccccccccccccccEEEEEEEEccccHccHHHcccccccccccccccccccccccccEEEEEcccEEEEEccccccEEEEEEccccccccccEEEEEEEccccccccccccccEEEEEEEEcccccEEEEEEEcc
mtrstyrplrlhrphenlhrpqggdiaQVGTTLALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLykhdepappplflratpiysqddhrgrpvercplhvcrdppplflratpiysqddhrgrpvercplhvSDALCNEINKGFEAVVKHIVRCTsahcqypmdersgrhtcvtplsppqpgadtvTLMYSFVCKtsclggmdrrpVLLLLTLENqhgqilgrrslsf
mtrstyrplrlhrphenlhrpqgGDIAQVGTTLALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCTSAHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTlenqhgqilgrrslsf
MTRSTYRPLRLHRPHENLHRPQGGDIAQVGTTLALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCTSAHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQILGRRSLSF
************************DIAQVGTTLALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLYK***************************ERCPLHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCTSAHCQYPMD******TCV*********ADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI********
******R********************QVGTT********************YELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLH****************VKHIVRCTSAHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQILGRRSLSF
MTRSTYRPLRLHRPHENLHRPQGGDIAQVGTTLALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCTSAHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQILGRRSLSF
****TYRPLRLHRPHENLHRPQGGDIAQVGTTLALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCTSAHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQILGRRSLSF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
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MTRSTYRPLRLHRPHENLHRPQGGDIAQVGTTLALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCTSAHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQILGRRSLSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query237 2.2.26 [Sep-21-2011]
Q9H3D4 680 Tumor protein 63 OS=Homo yes N/A 0.607 0.211 0.353 6e-25
O88898 680 Tumor protein 63 OS=Mus m no N/A 0.607 0.211 0.353 6e-25
Q9JJP6 680 Tumor protein 63 OS=Rattu no N/A 0.607 0.211 0.353 7e-25
Q9XSK8 637 Tumor protein p73 OS=Chlo N/A N/A 0.616 0.229 0.349 4e-24
O15350 636 Tumor protein p73 OS=Homo no N/A 0.616 0.229 0.338 7e-24
Q9JJP2 631 Tumor protein p73 OS=Mus no N/A 0.616 0.231 0.344 1e-23
P41685 386 Cellular tumor antigen p5 N/A N/A 0.611 0.375 0.333 6e-21
P10360 367 Cellular tumor antigen p5 no N/A 0.599 0.386 0.356 8e-21
Q9WUR6 391 Cellular tumor antigen p5 no N/A 0.607 0.368 0.338 8e-21
P25035 396 Cellular tumor antigen p5 N/A N/A 0.611 0.366 0.327 9e-21
>sp|Q9H3D4|P63_HUMAN Tumor protein 63 OS=Homo sapiens GN=TP63 PE=1 SV=1 Back     alignment and function desciption
 Score =  114 bits (285), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 98/184 (53%), Gaps = 40/184 (21%)

Query: 51  YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
           YS EL K++  I K  PIQ+K++       PPP              +G           
Sbjct: 194 YSTELKKLYCQIAKTCPIQIKVM------TPPP--------------QG----------- 222

Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHCQ 169
                  +RA P+Y + +H    V+RCP H    L  E N+G  A   H++R   ++H Q
Sbjct: 223 -----AVIRAMPVYKKAEHVTEVVKRCPNH---ELSREFNEGQIAPPSHLIRVEGNSHAQ 274

Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
           Y  D  +GR + + P  PPQ G +  T++Y+F+C +SC+GGM+RRP+L+++TLE + GQ+
Sbjct: 275 YVEDPITGRQSVLVPYEPPQVGTEFTTVLYNFMCNSSCVGGMNRRPILIIVTLETRDGQV 334

Query: 230 LGRR 233
           LGRR
Sbjct: 335 LGRR 338
Acts as a sequence specific DNA binding transcriptional activator or repressor. The isoforms contain a varying set of transactivation and auto-regulating transactivation inhibiting domains thus showing an isoform specific activity. Isoform 2 activates RIPK4 transcription. May be required in conjunction with TP73/p73 for initiation of p53/TP53 dependent apoptosis in response to genotoxic insults and the presence of activated oncogenes. Involved in Notch signaling by probably inducing JAG1 and JAG2. Plays a role in the regulation of epithelial morphogenesis. The ratio of DeltaN-type and TA*-type isoforms may govern the maintenance of epithelial stem cell compartments and regulate the initiation of epithelial stratification from the undifferentiated embryonal ectoderm. Required for limb formation from the apical ectodermal ridge. Activates transcription of the p21 promoter.
Homo sapiens (taxid: 9606)
>sp|O88898|P63_MOUSE Tumor protein 63 OS=Mus musculus GN=Tp63 PE=1 SV=1 Back     alignment and function description
>sp|Q9JJP6|P63_RAT Tumor protein 63 OS=Rattus norvegicus GN=Tp63 PE=2 SV=1 Back     alignment and function description
>sp|Q9XSK8|P73_CHLAE Tumor protein p73 OS=Chlorocebus aethiops GN=TP73 PE=2 SV=1 Back     alignment and function description
>sp|O15350|P73_HUMAN Tumor protein p73 OS=Homo sapiens GN=TP73 PE=1 SV=1 Back     alignment and function description
>sp|Q9JJP2|P73_MOUSE Tumor protein p73 OS=Mus musculus GN=Tp73 PE=1 SV=1 Back     alignment and function description
>sp|P41685|P53_FELCA Cellular tumor antigen p53 OS=Felis catus GN=TP53 PE=2 SV=1 Back     alignment and function description
>sp|P10360|P53_CHICK Cellular tumor antigen p53 OS=Gallus gallus GN=TP53 PE=2 SV=1 Back     alignment and function description
>sp|Q9WUR6|P53_CAVPO Cellular tumor antigen p53 OS=Cavia porcellus GN=TP53 PE=2 SV=1 Back     alignment and function description
>sp|P25035|P53_ONCMY Cellular tumor antigen p53 OS=Oncorhynchus mykiss GN=tp53 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query237
242247357 377 tumor protein p63 isoform alpha 2-like [ 0.632 0.397 0.397 2e-25
344239965 642 Tumor protein 63 [Cricetulus griseus] 0.687 0.253 0.330 8e-24
348513470 576 PREDICTED: tumor protein 63-like isoform 0.607 0.25 0.353 2e-23
426343294 416 PREDICTED: tumor protein 63 isoform 4 [G 0.607 0.346 0.353 2e-23
338716161 510 PREDICTED: tumor protein 63 [Equus cabal 0.607 0.282 0.353 2e-23
332215143 510 PREDICTED: tumor protein 63 isoform 7 [N 0.607 0.282 0.353 3e-23
431838874 660 Tumor protein 63, partial [Pteropus alec 0.607 0.218 0.353 3e-23
350591821 470 PREDICTED: tumor protein 63 isoform 3 [S 0.607 0.306 0.353 3e-23
395734554 416 PREDICTED: tumor protein 63 [Pongo abeli 0.607 0.346 0.353 3e-23
7248448 471 p51 isoform TAp63delta [Homo sapiens] gi 0.607 0.305 0.353 3e-23
>gi|242247357|ref|NP_001156096.1| tumor protein p63 isoform alpha 2-like [Acyrthosiphon pisum] gi|239792946|dbj|BAH72750.1| ACYPI002015 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 99/186 (53%), Gaps = 36/186 (19%)

Query: 50  QYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHV 109
            YS  L K+FIDI KVL +  K  Y  D+ A   L                         
Sbjct: 103 NYSVTLQKLFIDINKVLLLNFKCDY--DKIANNML------------------------- 135

Query: 110 CRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCTSAHCQ 169
                 LF+RA P+YS  D    PVERC  H+S    ++ NKGF  + +H++RC +    
Sbjct: 136 ------LFVRAMPMYSAADWLKEPVERCLQHLSPI--DQFNKGFTHL-EHVIRCDNESTT 186

Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
           Y +DE S R + VT LS P+ G+D+  L Y FVCKTSC+ GM RRP++++ TLE+  GQ+
Sbjct: 187 YHIDEISRRKSVVTLLSRPEHGSDSTKLSYRFVCKTSCISGMQRRPIIVIFTLEDYTGQV 246

Query: 230 LGRRSL 235
           LGRR L
Sbjct: 247 LGRRVL 252

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|344239965|gb|EGV96068.1| Tumor protein 63 [Cricetulus griseus] Back     alignment and taxonomy information
>gi|348513470|ref|XP_003444265.1| PREDICTED: tumor protein 63-like isoform 1 [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|426343294|ref|XP_004038248.1| PREDICTED: tumor protein 63 isoform 4 [Gorilla gorilla gorilla] Back     alignment and taxonomy information
>gi|338716161|ref|XP_003363408.1| PREDICTED: tumor protein 63 [Equus caballus] Back     alignment and taxonomy information
>gi|332215143|ref|XP_003256699.1| PREDICTED: tumor protein 63 isoform 7 [Nomascus leucogenys] Back     alignment and taxonomy information
>gi|431838874|gb|ELK00803.1| Tumor protein 63, partial [Pteropus alecto] Back     alignment and taxonomy information
>gi|350591821|ref|XP_003483342.1| PREDICTED: tumor protein 63 isoform 3 [Sus scrofa] Back     alignment and taxonomy information
>gi|395734554|ref|XP_003776435.1| PREDICTED: tumor protein 63 [Pongo abelii] Back     alignment and taxonomy information
>gi|7248448|gb|AAF43489.1| p51 isoform TAp63delta [Homo sapiens] gi|7384976|gb|AAF61624.1| p51 delta [Homo sapiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query237
UNIPROTKB|F1NWD0 582 TP63 "Uncharacterized protein" 0.531 0.216 0.413 1e-24
UNIPROTKB|F1N8Z7 660 TP63 "Uncharacterized protein" 0.531 0.190 0.413 1.4e-24
UNIPROTKB|F1MKA9 680 TP63 "Uncharacterized protein" 0.531 0.185 0.413 1.5e-24
UNIPROTKB|F1PL57 680 TP63 "Uncharacterized protein" 0.531 0.185 0.413 1.5e-24
UNIPROTKB|Q9H3D4 680 TP63 "Tumor protein 63" [Homo 0.531 0.185 0.413 1.5e-24
UNIPROTKB|I3LPD4 680 TP63 "Uncharacterized protein" 0.531 0.185 0.413 1.5e-24
MGI|MGI:1330810 680 Trp63 "transformation related 0.531 0.185 0.413 1.5e-24
RGD|620863 680 Tp63 "tumor protein p63" [Ratt 0.531 0.185 0.413 1.5e-24
UNIPROTKB|Q9JJP6 680 Tp63 "Tumor protein 63" [Rattu 0.531 0.185 0.413 1.5e-24
ZFIN|ZDB-GENE-030819-1 632 tp63 "tumor protein p63" [Dani 0.531 0.199 0.413 4.4e-24
UNIPROTKB|F1NWD0 TP63 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 289 (106.8 bits), Expect = 1.0e-24, P = 1.0e-24
 Identities = 55/133 (41%), Positives = 84/133 (63%)

Query:   105 CPLHV-CRDPPP--LFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIV 161
             CP+ +    PPP    +RA P+Y + +H    V+RCP H    L  E N+G  A   H++
Sbjct:   115 CPIQIKVMTPPPQGAVIRAMPVYKKAEHVTEVVKRCPNH---ELSREFNEGQIAPPSHLI 171

Query:   162 RCT-SAHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLL 220
             R   ++H QY  D  +GR + + P  PPQ G +  T++Y+F+C +SC+GGM+RRP+L+++
Sbjct:   172 RVEGNSHAQYVEDPITGRQSVLVPYEPPQVGTEFTTVLYNFMCNSSCVGGMNRRPILIIV 231

Query:   221 TLENQHGQILGRR 233
             TLE + GQ+LGRR
Sbjct:   232 TLETRDGQVLGRR 244
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA
GO:0006915 "apoptotic process" evidence=IEA
GO:0044212 "transcription regulatory region DNA binding" evidence=IEA
GO:0051262 "protein tetramerization" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
UNIPROTKB|F1N8Z7 TP63 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MKA9 TP63 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PL57 TP63 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H3D4 TP63 "Tumor protein 63" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LPD4 TP63 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1330810 Trp63 "transformation related protein 63" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620863 Tp63 "tumor protein p63" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9JJP6 Tp63 "Tumor protein 63" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030819-1 tp63 "tumor protein p63" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
cd08367179 cd08367, P53, P53 DNA-binding domain 6e-43
pfam00870196 pfam00870, P53, P53 DNA-binding domain 4e-33
>gnl|CDD|176262 cd08367, P53, P53 DNA-binding domain Back     alignment and domain information 
 Score =  142 bits (361), Expect = 6e-43
 Identities = 62/186 (33%), Positives = 93/186 (50%), Gaps = 42/186 (22%)

Query: 50  QYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHV 109
            YS +LNK+F+ + K  PIQ K+    +   PP L++RA  +Y   +H   PVERCP H 
Sbjct: 17  TYSPKLNKLFVKMAKTCPIQFKV----NPSPPPGLYVRAMLVYKDPEHVKEPVERCPNHR 72

Query: 110 CRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCTSAHCQ 169
             D                                       G  A   H++RC +   +
Sbjct: 73  QGDD--------------------------------------GHTAPNSHVIRCENPQAE 94

Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
           Y  D  +GR + V PL PPQ G++ VT++  F+C+ SC GG++RRP+ L+ TLE+++G +
Sbjct: 95  YVGDAFTGRLSVVVPLEPPQVGSEYVTVLLQFMCQNSCPGGINRRPIQLVFTLEDENGNV 154

Query: 230 LGRRSL 235
           LGRR +
Sbjct: 155 LGRRVI 160

P53 is a tumor suppressor gene product; mutations in p53 or lack of expression are found associated with a large fraction of all human cancers. P53 is activated by DNA damage and acts as a regulator of gene expression that ultimatively blocks progression through the cell cycle. P53 binds to DNA as a tetrameric transcription factor. In its inactive form, p53 is bound to the ring finger protein Mdm2, which promotes its ubiquitinylation and subsequent proteosomal degradation. Phosphorylation of p53 disrupts the Mdm2-p53 complex, while the stable and active p53 binds to regulatory regions of its target genes, such as the cyclin-kinase inhibitor p21, which complexes and inactivates cdk2 and other cyclin complexes. Length = 179
>gnl|CDD|201481 pfam00870, P53, P53 DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 237
PF00870196 P53: P53 DNA-binding domain; InterPro: IPR011615 T 100.0
cd08367179 P53 P53 DNA-binding domain. P53 is a tumor suppres 100.0
PF00870196 P53: P53 DNA-binding domain; InterPro: IPR011615 T 98.88
cd08367179 P53 P53 DNA-binding domain. P53 is a tumor suppres 98.59
PF09287196 CEP1-DNA_bind: CEP-1, DNA binding; InterPro: IPR01 94.93
>PF00870 P53: P53 DNA-binding domain; InterPro: IPR011615 This domain is found in p53 transcription factors, where it is responsible for DNA-binding Back     alignment and domain information 
Probab=100.00  E-value=2.2e-64  Score=437.45  Aligned_cols=175  Identities=39%  Similarity=0.795  Sum_probs=146.1

Q ss_pred             CCCCcccccce-EEEEEcccCCcccccCCeehhhhceeeeeccccccceeEecccCCCCCCCCccceeeccccccccCCC
Q psy14662         22 QGGDIAQVGTT-LALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGR  100 (237)
Q Consensus        22 ~~~~~~~~~~~-l~~~~~~~~~~~~~s~wtYS~~LnKLf~~m~k~cPi~~~~~~~~~~~~~p~~~~ram~vyk~~~h~~~  100 (237)
                      +|+++.++|.+ |+|+|.+ ++.+++++||||++||||||+|+++|||+|+++.      +|                  
T Consensus         3 vPs~~~ypG~~~F~v~f~~-s~t~Ks~~wtYS~~LnKLf~~~~k~cpv~~~~~~------~P------------------   57 (196)
T PF00870_consen    3 VPSNTDYPGPYNFQVSFQQ-SGTAKSATWTYSPKLNKLFCKMNKTCPVQFKVSS------PP------------------   57 (196)
T ss_dssp             S---S-BETTTTEEEEESS-SSSSTTTSEEEETTTTEEEEETTSEEEEEEEESS-------S------------------
T ss_pred             CCCCCCcCCCcccEEEecc-CCCCccccEEeehhcCceEEeccCCceEEEEEec------CC------------------
Confidence            57788888877 9999988 5678899999999999999999999999999988      55                  


Q ss_pred             ceeecCCCCCCCCCCCeeeEEEeeecCCCCCCcccCCCCCccccccccccCCCccccCcEEEeCCC-ceeccCCCCCCce
Q psy14662        101 PVERCPLHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCTSA-HCQYPMDERSGRH  179 (237)
Q Consensus       101 ~v~rcP~h~~~~p~~~~iR~~~~y~~~eh~~e~V~RCp~H~~~~~~~~~n~g~~a~~~HvIRcen~-~A~Y~~d~~t~R~  179 (237)
                                  |++..||++++|.++||++++|+|||||+   ..+++|+| .++++|||||+++ .|+|++|+.++|+
T Consensus        58 ------------p~g~~iRam~Vy~~~e~~~e~V~RCp~H~---~~~~~~~~-~~~~~HliR~~~~~~a~Y~~d~~t~R~  121 (196)
T PF00870_consen   58 ------------PPGTYIRAMPVYKKPEHVQEPVKRCPNHE---SSDDFNNG-SAPPSHLIRCEGNQSAQYVEDPNTGRH  121 (196)
T ss_dssp             ------------STTEEEEEEEEESSTTTTTSB-B--HHHH---TSSTTTSS-SS-TTBSEEEES-TT-EEEEETTTTEE
T ss_pred             ------------CCCCEEEEEEEEcchHhccCchhhCcccc---ccccccCC-CccccceEEEcCCceeEEecCCCCceE
Confidence                        77888899999999999999999999994   45565656 4678999999976 9999999999999


Q ss_pred             EEeecCCCCCCCCCceeEEEeeEecCCCCCCCCCceeEEEEEEEcCCceEEeEEEeeC
Q psy14662        180 TCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQILGRRSLSF  237 (237)
Q Consensus       180 SV~VP~e~Pq~Gse~~Ti~~~FmC~sSC~GGmNRRpi~lIfTLE~~~G~VLGRr~~ev  237 (237)
                      ||+||||.||+|++++|++|+|||+|||+||||||||+|||||||++|+|||||+|+|
T Consensus       122 sV~VP~e~pq~g~~~~t~~~~FmC~sSC~gg~nRRpi~~ifTLE~~~g~vlGR~~~~v  179 (196)
T PF00870_consen  122 SVLVPYEPPQVGSEYTTILYNFMCNSSCMGGMNRRPILLIFTLEDSDGQVLGRRSFEV  179 (196)
T ss_dssp             EEEEE---SSTTSSSEEEEEEESS-TTGTTTTTTS-EEEEEEEEETTSCEEEEEEEEE
T ss_pred             EEEeeccCCccccceeeeeeeeeEcccccCCCCCceEEEEEEEECCCCCEeeeeccCc
Confidence            9999999999999999999999999999999999999999999999999999999986

These transcription factors play diverse roles in the regulation of cellular functions: the p53 tumour suppressor upregulates the expression of genes involved in cell cycle arrest and apoptosis []. The DNA-binding domain acts to clamp, or in the case of TonEBP, encircle the DNA target in order to stabilise the protein-DNA complex []. Protein interactions may also serve to stabilise the protein-DNA complex, for example in the STAT-1 dimer the SH2 (Src homology 2) domain in each monomer is coupled to the DNA-binding domain to increase stability []. The DNA-binding domain consists of a beta-sandwich formed of 9 strands in 2 sheets with a Greek-key topology. This structure is found in many transcription factors, often within the DNA-binding domain.; GO: 0044212 transcription regulatory region DNA binding; PDB: 3US2_A 3QYM_E 3QYN_A 3US0_C 3US1_D 2RMN_A 3Q06_B 2VUK_A 2H1L_M 1KZY_B ....
>cd08367 P53 P53 DNA-binding domain Back     alignment and domain information
>PF00870 P53: P53 DNA-binding domain; InterPro: IPR011615 This domain is found in p53 transcription factors, where it is responsible for DNA-binding Back     alignment and domain information
>cd08367 P53 P53 DNA-binding domain Back     alignment and domain information
>PF09287 CEP1-DNA_bind: CEP-1, DNA binding; InterPro: IPR015367 This DNA-binding domain is found in the Caenorhabditis transcription factor CEP-1, which is related to human p53 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
2rmn_A233 The Solution Structure Of The P63 Dna-Binding Domai 9e-26
3qym_A203 Structure Of P63 Dna Binding Domain In Complex With 1e-25
2xwc_A208 Crystal Structure Of The Dna Binding Domain Of Huma 2e-24
3vd0_A210 Structure Of P73 Dna Binding Domain Tetramer Modula 2e-24
3q05_A234 An Induced Fit Mechanism Regulates P53 Dna Binding 4e-21
3q06_A231 An Induced Fit Mechanism Regulates P53 Dna Binding 4e-21
3q01_A233 An Induced Fit Mechanism Regulates P53 Dna Binding 4e-21
2wgx_A219 Human P53 Core Domain Mutant M133l-V203a-Y236f-N239 5e-20
2fej_A204 Solution Structure Of Human P53 Dna Binding Domain 9e-20
1kzy_A195 Crystal Structure Of The 53bp1 Brct Region Complexe 9e-20
1tsr_A219 P53 Core Domain In Complex With Dna Length = 219 9e-20
2h1l_M203 The Structure Of The Oncoprotein Sv40 Large T Antig 1e-19
2xwr_A205 Crystal Structure Of The Dna-Binding Domain Of Huma 1e-19
2ac0_A200 Structural Basis Of Dna Recognition By P53 Tetramer 1e-19
1ycs_A199 P53-53bp2 Complex Length = 199 1e-19
2qxa_A195 Human P53 Core Domain Mutant V157f Length = 195 1e-19
2ybg_A200 Structure Of Lys120-Acetylated P53 Core Domain Leng 1e-19
1gzh_C198 Crystal Structure Of The Brct Domains Of Human 53bp 1e-19
2j1z_A219 Human P53 Core Domain Mutant M133l-V203a-N239y-N268 1e-19
2pcx_A220 Crystal Structure Of P53dbd(R282q) At 1.54-Angstrom 1e-19
3kmd_A200 Crystal Structure Of The P53 Core Domain Bound To A 1e-19
2qxb_A195 Human P53 Core Domain Mutant N235k Length = 195 1e-19
2qxc_A195 Human P53 Core Domain Mutant N239y Length = 195 2e-19
2j21_A219 Human P53 Core Domain Mutant M133l-V203a-N239y-N268 2e-19
2bim_A219 Human P53 Core Domain Mutant M133l-V203a-N239y-N268 2e-19
1uol_A219 Crystal Structure Of The Human P53 Core Domain Muta 2e-19
2j20_A219 Human P53 Core Domain Mutant M133l-V203a-N239y-N268 2e-19
2qvq_A196 Human P53 Core Domain Mutant V157fN235KN239Y Length 3e-19
2j1x_A219 Human P53 Core Domain Mutant M133l-V203a-Y220c-N239 3e-19
1gzh_A198 Crystal Structure Of The Brct Domains Of Human 53bp 3e-19
3d05_A200 Human P53 Core Domain With Hot Spot Mutation R249s 4e-19
2j1w_A219 Human P53 Core Domain Mutant M133l-v143a-v203a-n239 5e-19
2bio_A219 Human P53 Core Domain Mutant M133l-V203a-N239y-R249 1e-18
2j1y_A200 Human P53 Core Domain Mutant M133l-V203a-N239y-G245 1e-18
2bin_A219 Human P53 Core Domain Mutant M133l-H168r-V203a-N239 2e-18
3d09_A200 Human P53 Core Domain With Hot Spot Mutation R249s 3e-18
3d08_A200 Human P53 Core Domain With Hot Spot Mutation R249s 3e-18
3exj_A197 Crystal Structure Of A P53 Core Tetramer Bound To D 7e-18
2geq_A201 Crystal Structure Of A P53 Core Dimer Bound To Dna 7e-18
2p52_A196 Mouse P53 Dna-Binding Domain In Zinc-Free Oxidized 8e-18
2biq_A219 Human P53 Core Domain Mutant T123a-M133l-H168r-V203 8e-18
2bip_A219 Human P53 Core Domain Mutant M133l-H168r-V203a-N239 8e-18
1hu8_A186 Crystal Structure Of The Mouse P53 Core Dna-Binding 1e-17
>pdb|2RMN|A Chain A, The Solution Structure Of The P63 Dna-Binding Domain Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  113 bits (283), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 96/184 (52%), Gaps = 40/184 (21%)
Query: 51  YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
           YS EL K++  I K  PIQ+K++       PPP                           
Sbjct: 43  YSTELKKLYCQIAKTCPIQIKVM------TPPPQ-------------------------- 70
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHCQ 169
                  +RA P+Y + +H    V+RCP H    L  E N+G  A   H++R   ++H Q
Sbjct: 71  ----GAVIRAMPVYKKAEHVTEVVKRCPNH---ELSREFNEGQIAPPSHLIRVEGNSHAQ 123
Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
           Y  D  +GR + + P  PPQ G +  T++Y+F+C +SC+GGM+RRP+L+++TLE + GQ+
Sbjct: 124 YVEDPITGRQSVLVPYEPPQVGTEFTTVLYNFMCNSSCVGGMNRRPILIIVTLETRDGQV 183
Query: 230 LGRR 233
           LGRR
Sbjct: 184 LGRR 187
>pdb|3QYM|A Chain A, Structure Of P63 Dna Binding Domain In Complex With A 10 Base Pair AT Rich Response Element Half Site Length = 203 Back     alignment and structure
>pdb|2XWC|A Chain A, Crystal Structure Of The Dna Binding Domain Of Human Tp73 Refined At 1.8 A Resolution Length = 208 Back     alignment and structure
>pdb|3VD0|A Chain A, Structure Of P73 Dna Binding Domain Tetramer Modulates P73 Transactivation Length = 210 Back     alignment and structure
>pdb|3Q05|A Chain A, An Induced Fit Mechanism Regulates P53 Dna Binding Kinetics To Confer Sequence Specificity Length = 234 Back     alignment and structure
>pdb|3Q06|A Chain A, An Induced Fit Mechanism Regulates P53 Dna Binding Kinetics To Confer Sequence Specificity Length = 231 Back     alignment and structure
>pdb|3Q01|A Chain A, An Induced Fit Mechanism Regulates P53 Dna Binding Kinetics To Confer Sequence Specificity Length = 233 Back     alignment and structure
>pdb|2WGX|A Chain A, Human P53 Core Domain Mutant M133l-V203a-Y236f-N239y-T253i- N268d Length = 219 Back     alignment and structure
>pdb|2FEJ|A Chain A, Solution Structure Of Human P53 Dna Binding Domain Length = 204 Back     alignment and structure
>pdb|1KZY|A Chain A, Crystal Structure Of The 53bp1 Brct Region Complexed To Tumor Suppressor P53 Length = 195 Back     alignment and structure
>pdb|1TSR|A Chain A, P53 Core Domain In Complex With Dna Length = 219 Back     alignment and structure
>pdb|2H1L|M Chain M, The Structure Of The Oncoprotein Sv40 Large T Antigen And P53 Tumor Suppressor Complex Length = 203 Back     alignment and structure
>pdb|2XWR|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human P53 With Extended N Terminus Length = 205 Back     alignment and structure
>pdb|2AC0|A Chain A, Structural Basis Of Dna Recognition By P53 Tetramers (Complex I) Length = 200 Back     alignment and structure
>pdb|1YCS|A Chain A, P53-53bp2 Complex Length = 199 Back     alignment and structure
>pdb|2QXA|A Chain A, Human P53 Core Domain Mutant V157f Length = 195 Back     alignment and structure
>pdb|2YBG|A Chain A, Structure Of Lys120-Acetylated P53 Core Domain Length = 200 Back     alignment and structure
>pdb|1GZH|C Chain C, Crystal Structure Of The Brct Domains Of Human 53bp1 Bound To The P53 Tumor Supressor Length = 198 Back     alignment and structure
>pdb|2J1Z|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-F270l Length = 219 Back     alignment and structure
>pdb|2PCX|A Chain A, Crystal Structure Of P53dbd(R282q) At 1.54-Angstrom Resolution Length = 220 Back     alignment and structure
>pdb|3KMD|A Chain A, Crystal Structure Of The P53 Core Domain Bound To A Full Consensus Site As A Self-Assembled Tetramer Length = 200 Back     alignment and structure
>pdb|2QXB|A Chain A, Human P53 Core Domain Mutant N235k Length = 195 Back     alignment and structure
>pdb|2QXC|A Chain A, Human P53 Core Domain Mutant N239y Length = 195 Back     alignment and structure
>pdb|2J21|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R282w Length = 219 Back     alignment and structure
>pdb|2BIM|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R273h Length = 219 Back     alignment and structure
>pdb|1UOL|A Chain A, Crystal Structure Of The Human P53 Core Domain Mutant M133lV203AN239YN268D AT 1.9 A RESOLUTION. Length = 219 Back     alignment and structure
>pdb|2J20|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R273c Length = 219 Back     alignment and structure
>pdb|2QVQ|A Chain A, Human P53 Core Domain Mutant V157fN235KN239Y Length = 196 Back     alignment and structure
>pdb|2J1X|A Chain A, Human P53 Core Domain Mutant M133l-V203a-Y220c-N239y-N268d Length = 219 Back     alignment and structure
>pdb|1GZH|A Chain A, Crystal Structure Of The Brct Domains Of Human 53bp1 Bound To The P53 Tumor Supressor Length = 198 Back     alignment and structure
>pdb|3D05|A Chain A, Human P53 Core Domain With Hot Spot Mutation R249s (Ii) Length = 200 Back     alignment and structure
>pdb|2J1W|A Chain A, Human P53 Core Domain Mutant M133l-v143a-v203a-n239y-n268d Length = 219 Back     alignment and structure
>pdb|2BIO|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-R249s-N268d Length = 219 Back     alignment and structure
>pdb|2J1Y|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-G245s-N268d Length = 200 Back     alignment and structure
>pdb|2BIN|A Chain A, Human P53 Core Domain Mutant M133l-H168r-V203a-N239y-N268d Length = 219 Back     alignment and structure
>pdb|3D09|A Chain A, Human P53 Core Domain With Hot Spot Mutation R249s And Second-Site Suppressor Mutations H168r And T123a Length = 200 Back     alignment and structure
>pdb|3D08|A Chain A, Human P53 Core Domain With Hot Spot Mutation R249s And Second-Site Suppressor Mutation H168r Length = 200 Back     alignment and structure
>pdb|3EXJ|A Chain A, Crystal Structure Of A P53 Core Tetramer Bound To Dna Length = 197 Back     alignment and structure
>pdb|2GEQ|A Chain A, Crystal Structure Of A P53 Core Dimer Bound To Dna Length = 201 Back     alignment and structure
>pdb|2P52|A Chain A, Mouse P53 Dna-Binding Domain In Zinc-Free Oxidized State Length = 196 Back     alignment and structure
>pdb|2BIQ|A Chain A, Human P53 Core Domain Mutant T123a-M133l-H168r-V203a-N239y- R249s-N268d Length = 219 Back     alignment and structure
>pdb|2BIP|A Chain A, Human P53 Core Domain Mutant M133l-H168r-V203a-N239y-R249s- N268d Length = 219 Back     alignment and structure
>pdb|1HU8|A Chain A, Crystal Structure Of The Mouse P53 Core Dna-Binding Domain At 2.7a Resolution Length = 186 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
2xip_A208 Tumour protein P73; phosphoprotein, tumor suppress 8e-37
2rmn_A233 Tumor protein 63; beta sandwich, DNA binding, P53 1e-36
3q01_A233 Cellular tumor antigen P53; beta sandwich, multido 3e-36
3d06_A200 Cellular tumor antigen P53; mutant protein, loop-s 4e-35
>2rmn_A Tumor protein 63; beta sandwich, DNA binding, P53 family, activator, alternative promoter usage, alternative splicing; NMR {Homo sapiens} Length = 233 Back     alignment and structure
>3q01_A Cellular tumor antigen P53; beta sandwich, multidomain, oligomerization, TP53, TUMO suppressor, dimer, DNA binding, antitumor protein; 2.10A {Homo sapiens} PDB: 3q05_A* 3ts8_A 3q06_A* 1a1u_A Length = 233 Back     alignment and structure
>3d06_A Cellular tumor antigen P53; mutant protein, loop-sheet-helix motif, acetylation, activator, alternative splicing, anti-oncogene, apoptosis; 1.20A {Homo sapiens} PDB: 3d05_A 3d07_A 2ac0_A 2ady_A 2ahi_A 2ata_A 2ybg_A 3igl_A* 3kz8_A* 2ocj_A 1tup_A* 1tsr_A 3d08_A 3d0a_A* 3igk_A* 2xwr_A 2fej_A 2h1l_M 1ycs_A 3d09_A ... Length = 200 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query237
3q01_A233 Cellular tumor antigen P53; beta sandwich, multido 100.0
2xip_A208 Tumour protein P73; phosphoprotein, tumor suppress 100.0
3d06_A200 Cellular tumor antigen P53; mutant protein, loop-s 100.0
2rmn_A233 Tumor protein 63; beta sandwich, DNA binding, P53 100.0
3q01_A233 Cellular tumor antigen P53; beta sandwich, multido 98.9
2xip_A208 Tumour protein P73; phosphoprotein, tumor suppress 98.67
3d06_A200 Cellular tumor antigen P53; mutant protein, loop-s 98.67
2rmn_A233 Tumor protein 63; beta sandwich, DNA binding, P53 98.57
1t4w_A196 CEP-1, C.elegans P53 tumor suppressor-like transcr 96.56
>3q01_A Cellular tumor antigen P53; beta sandwich, multidomain, oligomerization, TP53, TUMO suppressor, dimer, DNA binding, antitumor protein; 2.10A {Homo sapiens} PDB: 3q05_A* 3ts8_A 3q06_A* 1a1u_A Back     alignment and structure
Probab=100.00  E-value=2.5e-63  Score=439.70  Aligned_cols=175  Identities=34%  Similarity=0.646  Sum_probs=159.6

Q ss_pred             CCCCCcccccce-EEEEEcccCCcccccCCeehhhhceeeeeccccccceeEecccCCCCCCCCccceeeccccccccCC
Q psy14662         21 PQGGDIAQVGTT-LALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRG   99 (237)
Q Consensus        21 ~~~~~~~~~~~~-l~~~~~~~~~~~~~s~wtYS~~LnKLf~~m~k~cPi~~~~~~~~~~~~~p~~~~ram~vyk~~~h~~   99 (237)
                      -+|+++.++|.. |+|.|.+ ++.+++++||||+.||||||+|+++|||+|+++.      +|                 
T Consensus         3 ~vPs~~~ypG~~~F~v~f~~-s~t~Ks~twtYS~~LnKLf~~~~k~cPv~~~~~~------~P-----------------   58 (233)
T 3q01_A            3 SVPSQKTYQGSYGFRLGFLH-SGTAKSVTCTYSPALNKMFVQLAKTVPVQLYVDS------TP-----------------   58 (233)
T ss_dssp             CCCCCCCBCTTTTCEEECCC-CCCCTTCSEEEETTTTEEEECTTCCEEEEEECSS------CC-----------------
T ss_pred             cCCCCCCcCCcceEEEEecc-CCCCCCCCeEEchhhCeeEecccCccceEEEecc------CC-----------------
Confidence            468888998877 8888887 4678889999999999999999999999999988      55                 


Q ss_pred             CceeecCCCCCCCCCCCeeeEEEeeecCCCCCCcccCCCCCccccccccccCCCccccCcEEEeC-CCceeccCCCCCCc
Q psy14662        100 RPVERCPLHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHCQYPMDERSGR  178 (237)
Q Consensus       100 ~~v~rcP~h~~~~p~~~~iR~~~~y~~~eh~~e~V~RCp~H~~~~~~~~~n~g~~a~~~HvIRce-n~~A~Y~~d~~t~R  178 (237)
                                   |++..||++++|++.||++++|+|||||   +.+++ |+| .++++|||||+ |+.|+|++|++++|
T Consensus        59 -------------p~g~~vRam~Vy~~~eh~~e~V~RCp~H---~~~~d-~d~-~~~~~HliR~egn~~a~Y~~d~~t~R  120 (233)
T 3q01_A           59 -------------PPGTRVRAMAIYKQSQHMTEVVRRCPHH---ERSSD-SDG-LAPPQHLIRVEGNLRAEYLDDPNTFR  120 (233)
T ss_dssp             -------------CTTCEEEEEEEESSGGGTTSCCCCCHHH---HSCSC-CCC-SSCTTCSEEEESCTTCEEEECTTTCC
T ss_pred             -------------CCCCEEEEEEEEcchHhcCCCcccCccc---ccccc-CCC-CCCcccEEEEcCCcceEEecCCCcce
Confidence                         7788888888888899999999999999   44444 556 46789999998 88999999999999


Q ss_pred             eEEeecCCCCCCCCCceeEEEeeEecCCCCCCCCCceeEEEEEEEcCCceEEeEEEeeC
Q psy14662        179 HTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQILGRRSLSF  237 (237)
Q Consensus       179 ~SV~VP~e~Pq~Gse~~Ti~~~FmC~sSC~GGmNRRpi~lIfTLE~~~G~VLGRr~~ev  237 (237)
                      +||+||||+||+|++++|++|+|||+|||+||||||||+|||||||++|+|||||+|+|
T Consensus       121 ~sV~VP~e~pq~G~~~~ti~~~FmC~sSC~GGmNRRpi~lIfTLE~~~G~vLGR~~~ev  179 (233)
T 3q01_A          121 HSVVVPYEPPEVGSDYTTIYFKFMCNSSCMGGMNRRPILVIITLEDSSGNLLGRDSFEV  179 (233)
T ss_dssp             EEEEEECCCCCTTCSCEEEEEEECSCTTCTTTTTTCCEEEEEEEECTTCCEEEEEEEEE
T ss_pred             EEEEEecCCCCCCcceEEEEEEeeecCccCCCcccceeEEEEEEECCCCCEeeeeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999986
>3d06_A Cellular tumor antigen P53; mutant protein, loop-sheet-helix motif, acetylation, activator, alternative splicing, anti-oncogene, apoptosis; 1.20A {Homo sapiens} PDB: 3d05_A 3d07_A 2ac0_A 2ady_A 2ahi_A 2ata_A 2ybg_A 3igl_A* 3kz8_A* 2ocj_A 1tup_A* 1tsr_A 3d08_A 3d0a_A* 3igk_A* 2xwr_A 2fej_A 2h1l_M 1ycs_A 3d09_A ... Back     alignment and structure
>2rmn_A Tumor protein 63; beta sandwich, DNA binding, P53 family, activator, alternative promoter usage, alternative splicing; NMR {Homo sapiens} Back     alignment and structure
>3q01_A Cellular tumor antigen P53; beta sandwich, multidomain, oligomerization, TP53, TUMO suppressor, dimer, DNA binding, antitumor protein; 2.10A {Homo sapiens} PDB: 3q05_A* 3ts8_A 3q06_A* 1a1u_A Back     alignment and structure
>3d06_A Cellular tumor antigen P53; mutant protein, loop-sheet-helix motif, acetylation, activator, alternative splicing, anti-oncogene, apoptosis; 1.20A {Homo sapiens} PDB: 3d05_A 3d07_A 2ac0_A 2ady_A 2ahi_A 2ata_A 2ybg_A 3igl_A* 3kz8_A* 2ocj_A 1tup_A* 1tsr_A 3d08_A 3d0a_A* 3igk_A* 2xwr_A 2fej_A 2h1l_M 1ycs_A 3d09_A ... Back     alignment and structure
>2rmn_A Tumor protein 63; beta sandwich, DNA binding, P53 family, activator, alternative promoter usage, alternative splicing; NMR {Homo sapiens} Back     alignment and structure
>1t4w_A CEP-1, C.elegans P53 tumor suppressor-like transcription factor; DNA-binding domain; 2.10A {Caenorhabditis elegans} SCOP: b.2.5.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 237
d2ac0a1194 b.2.5.2 (A:96-289) p53 tumor suppressor, DNA-bindi 6e-40
>d2ac0a1 b.2.5.2 (A:96-289) p53 tumor suppressor, DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 194 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: p53 DNA-binding domain-like
domain: p53 tumor suppressor, DNA-binding domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (338), Expect = 6e-40
 Identities = 57/186 (30%), Positives = 84/186 (45%), Gaps = 42/186 (22%)

Query: 51  YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
           YS  LNK+F  + K  P+Q+                               V+  P    
Sbjct: 31  YSPALNKMFCQLAKTCPVQLW------------------------------VDSTP---- 56

Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCTS-AHCQ 169
             PP   +RA  IY Q  H    V RCP H         +    A  +H++R       +
Sbjct: 57  --PPGTRVRAMAIYKQSQHMTEVVRRCPHHER-----CSDSDGLAPPQHLIRVEGNLRVE 109

Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
           Y  D  + RH+ V P  PP+ G+D  T+ Y+++C +SC+GGM+RRP+L ++TLE+  G +
Sbjct: 110 YLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNL 169

Query: 230 LGRRSL 235
           LGR S 
Sbjct: 170 LGRNSF 175

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query237
d2ac0a1194 p53 tumor suppressor, DNA-binding domain {Human (H 100.0
d2ac0a1194 p53 tumor suppressor, DNA-binding domain {Human (H 98.7
d1t4wa_196 Transcription factor CEP-1 {Caenorhabditis elegans 96.6
>d2ac0a1 b.2.5.2 (A:96-289) p53 tumor suppressor, DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: p53 DNA-binding domain-like
domain: p53 tumor suppressor, DNA-binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-60  Score=411.16  Aligned_cols=174  Identities=34%  Similarity=0.663  Sum_probs=157.0

Q ss_pred             CCCCcccccce-EEEEEcccCCcccccCCeehhhhceeeeeccccccceeEecccCCCCCCCCccceeeccccccccCCC
Q psy14662         22 QGGDIAQVGTT-LALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGR  100 (237)
Q Consensus        22 ~~~~~~~~~~~-l~~~~~~~~~~~~~s~wtYS~~LnKLf~~m~k~cPi~~~~~~~~~~~~~p~~~~ram~vyk~~~h~~~  100 (237)
                      +|+++.++|.+ |+|.+.+ ++.+++++||||+.|||||++|+++|||+|++..      +|                  
T Consensus         2 ~ps~~~ypG~y~F~v~~~~-~~~~ks~~wtyS~~LnKLfv~m~~~cp~~~~~~~------~p------------------   56 (194)
T d2ac0a1           2 VPSQKTYQGSYGFRLGFLH-SGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDS------TP------------------   56 (194)
T ss_dssp             CCCCCCBCTTTTCEEEECC-CCCCTTCSEEEETTTTEEEECTTSCEEEEEECSS------CC------------------
T ss_pred             CCccCCCCCccceEEEccC-CCCCCcCceEechhhCEeEEecCCcEEEEEEEec------CC------------------
Confidence            57788888877 8888866 5678899999999999999999999999999987      55                  


Q ss_pred             ceeecCCCCCCCCCCCeeeEEEeeecCCCCCCcccCCCCCccccccccccCCCccccCcEEEeC-CCceeccCCCCCCce
Q psy14662        101 PVERCPLHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHCQYPMDERSGRH  179 (237)
Q Consensus       101 ~v~rcP~h~~~~p~~~~iR~~~~y~~~eh~~e~V~RCp~H~~~~~~~~~n~g~~a~~~HvIRce-n~~A~Y~~d~~t~R~  179 (237)
                                  |.+..||++++|.++||++++|+||+||..   .++ +.+. ++++|||||+ |+.|+|++|+.++|+
T Consensus        57 ------------p~~~~vRa~~vy~~~e~~~~~V~RC~~H~~---~~~-~~~~-~~~~H~iR~egn~~a~Y~~d~~t~R~  119 (194)
T d2ac0a1          57 ------------PPGTRVRAMAIYKQSQHMTEVVRRCPHHER---CSD-SDGL-APPQHLIRVEGNLRVEYLDDRNTFRH  119 (194)
T ss_dssp             ------------CTTCEEEEEEEESSTTTTTSCCCCCHHHHT---SSC-CCSS-SCTTCSEEEESCTTCEEEECTTTCCE
T ss_pred             ------------CCCCEEEEEEEEcChhhcCcccccCcCccc---cCC-CCCC-CCcceEEEEcCCCceEEEecCCCCEE
Confidence                        778899999999999999999999999953   222 2233 5679999998 899999999999999


Q ss_pred             EEeecCCCCCCCCCceeEEEeeEecCCCCCCCCCceeEEEEEEEcCCceEEeEEEeeC
Q psy14662        180 TCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQILGRRSLSF  237 (237)
Q Consensus       180 SV~VP~e~Pq~Gse~~Ti~~~FmC~sSC~GGmNRRpi~lIfTLE~~~G~VLGRr~~ev  237 (237)
                      ||+|||+.||+|+++++++|+|||+|||+||||||||+|||||||++|+|||||+|+|
T Consensus       120 sv~vP~~~p~~g~~~~t~~~~FmC~nSC~gg~nRR~i~lVftLE~~~G~vLGR~~~~V  177 (194)
T d2ac0a1         120 SVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEV  177 (194)
T ss_dssp             EEEEECCCCCTTCSSEEEEEEECSCTTCTTTTTTCCEEEEEEEECTTCCEEEEEEEEE
T ss_pred             EEEEecCCCCCCceEEEEEEEEEccCcCCCccccceEEEEEEEECCCCcEeeeEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999986
>d2ac0a1 b.2.5.2 (A:96-289) p53 tumor suppressor, DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t4wa_ b.2.5.2 (A:) Transcription factor CEP-1 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure