Psyllid ID: psy14674

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
Protein Sequence
MSSRIISRSGYDAKSSNSKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQVDDRLAALGLRDRDCMYTKLYTIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHccccccEEEEEcEEEEEEccccccccEEEEEccccccccccHHHHHHHHHHHHccccccEEcccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccEEEEcccccEEccccEEEEEEccccccccccEEEcEEEEEEEccEEEEEEEEEEEEEccccccEEEEccccccccccEEEEEEcccEEEEccccEEEEEEEEEEcccccEEEEEEEEEEEcccEEccccccccccccHHHHcccccccccEEEEEEEEEccEEEEEEEccEEEEEEEEEEEEEcccccEEEEEccccccccccEEEEEEcccEEEEccccEEEEEEEEEEcccccccEEEEEEEEEcccEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccHHHcccccHccccHHccHHHHHHHHcHHHHHHHHHHHHccHHHHcccEEEEEcccccHHHHHHHHccccEEEEEEcccHHHHHHHHHHHccccccEEEEEccccccccccccccEEEEEEcccEEcEcEcccHHHHHHHHHHHEEEEEEEEccEEEEEEEEEccHHcccccEccEEEEEEEccEEEEEEEEEccHHHHHHHcHHHHcEccEcccHHHHHHHcccEEEcccHHHEEEEEEEEEEEEcccccHHHHcEEEEEEEEEcccEEEEEEEEEEEEEccccccccEEEcccccccccccEEEEEEEEEEEEccccEEEEEEEEEEcccccccEEEEEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEEEEEcHHHHccEEEEEEEcccEEEEEEEEEEEEEccccccccEEEcccccccccccEEEEEEEEEEEEccccEEEEEEEEEEcccccccEEEEEEEEEEccccEEEEEEEEEEc
Coil and Loop (DISEMBL)
mssriisrsgydakssnskpsqqngdskdenvqcedmtsrdyyfdsyahfgiheeMLKDEVRTMTyrnsmyhnkhlfkGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKveevelpfgiqkVDIIISEWMGYCLFYESMLDTVLYARDKWlatngllfpdkaslFICGiedlqggqdhvvgqcvrvlfpdkaslficgiedrqykedkitwwdnvygfdmSCIKKiaikeplvdvvdpkqvvtsscllkeidlytitkadlsftspftlqvRRNDYVQALVTFFSVEFSkchkrigfstapeahythWKQTVFYLNEhltvkkgeevvgsfgmqpnprnnrdldftvEVNFKgelcemsesndyqVDDRLAAlglrdrdcmytklytivhapftlqvrRNDYVQALVTFFSVEFSkchkrigfstapeahythWKQTVFYLNEhltvkkgeevvgsfgmqpnprnnrdldftvEVNFKgelcemsesndyrmr
Flexible Loop (DISEMBL)
mssriisrsgydakssnskpsqqngdskdenvQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKeivdknnlSDVVTILKgkveevelpfgiQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGiedrqykedkitWWDNVYGFDMSCIKKIAIkeplvdvvdpKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGsfgmqpnprnnrdldFTVEVNFKGELcemsesndyqVDDRLAALGLRDRDCMYTKLYTIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGsfgmqpnprnnrdldFTVEVNfkgelcemsesndyrmr
Low Complexity Region (SEG)
MSSRIISRSGYDAKSSNSKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQVDDRLAALGLRDRDCMYTKLYTIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR
Disordered region (IsUnstruct)
**************************************SRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFG*********DLDFTVEVNFKGELCEMSESNDYQVDDRLAALGLRDRDCMYTKLYTIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSF***********LDFTVEVNFKG**************
Disordered Region (DISOPRED)
*****************************************YYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQVDDRLAALGLRDRDCMYTKLYTIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR
Disordered Region (DISEMBL)
*******************************VQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQVDDRLAALGLRDRDCMYTKLYTIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMS********
Disordered Region (DISPRO)
**************************************SRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQVDDRLAALGLRDRDCMYTKLYTIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSRIISRSGYDAKSSNSKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQVDDRLAALGLRDRDCMYTKLYTIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	519	2.2.26 [Sep-21-2011]
Q99873	361	Protein arginine N-methyl	yes	N/A	0.637	0.916	0.661	1e-145
Q9JIF0	371	Protein arginine N-methyl	yes	N/A	0.637	0.892	0.658	1e-145
Q63009	353	Protein arginine N-methyl	yes	N/A	0.637	0.937	0.658	1e-145
Q8AV13	369	Protein arginine N-methyl	N/A	N/A	0.653	0.918	0.643	1e-144
Q28F07	351	Protein arginine N-methyl	yes	N/A	0.628	0.928	0.659	1e-144
Q6VRB0	351	Protein arginine N-methyl	N/A	N/A	0.628	0.928	0.653	1e-143
Q6PAK3	394	Protein arginine N-methyl	no	N/A	0.662	0.873	0.619	1e-142
Q9NR22	394	Protein arginine N-methyl	no	N/A	0.662	0.873	0.617	1e-142
Q5RGQ2	419	Protein arginine N-methyl	no	N/A	0.628	0.778	0.639	1e-139
Q9SU94	390	Protein arginine N-methyl	yes	N/A	0.647	0.861	0.532	1e-112

>sp|Q99873|ANM1_HUMAN Protein arginine N-methyltransferase 1 OS=Homo sapiens GN=PRMT1 PE=1 SV=2

 Score =  516 bits (1328), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 240/363 (66%), Positives = 295/363 (81%), Gaps = 32/363 (8%)

Query: 30  ENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGT 89
           E    EDMTS+DYYFDSYAHFGIHEEMLKDEVRT+TYRNSM+HN+HLFK K+VLD+G GT
Sbjct: 30  EKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGT 89

Query: 90  GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149
           GIL MFAAK+GA +VIGIECS+I +YA +IV  N L  VVTI+KGKVEEVELP  ++KVD
Sbjct: 90  GILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELP--VEKVD 147

Query: 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQC 209
           IIISEWMGYCLFYESML+TVLYARDKWLA +GL+FPD                       
Sbjct: 148 IIISEWMGYCLFYESMLNTVLYARDKWLAPDGLIFPD----------------------- 184

Query: 210 VRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVT 269
                  +A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT
Sbjct: 185 -------RATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVT 237

Query: 270 SSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA 329
           ++CL+KE+D+YT+   DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+
Sbjct: 238 NACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPES 297

Query: 330 HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESND 389
            YTHWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S D
Sbjct: 298 PYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTD 357

Query: 390 YQV 392
           Y++
Sbjct: 358 YRM 360

Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in proteins such as ESR1, histone H2, H3 and H4, PIAS1, HNRNPA1, HNRNPD, NFATC2IP, SUPT5H, TAF15 and EWS. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Together with dimethylated PIAS1, represses STAT1 transcriptional activity, in the late phase of interferon gamma (IFN-gamma) signaling. May be involved in the regulation of TAF15 transcriptional activity, act as an activator of estrogen receptor (ER)-mediated transactivation, play a key role in neurite outgrowth and act as a negative regulator of megakaryocytic differentiation, by modulating p38 MAPK pathway.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 5

>sp|Q9JIF0|ANM1_MOUSE Protein arginine N-methyltransferase 1 OS=Mus musculus GN=Prmt1 PE=1 SV=1

 Score =  514 bits (1325), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 239/363 (65%), Positives = 295/363 (81%), Gaps = 32/363 (8%)

Query: 30  ENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGT 89
           E    EDMTS+DYYFDSYAHFGIHEEMLKDEVRT+TYRNSM+HN+HLFK K+VLD+G GT
Sbjct: 40  EKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGT 99

Query: 90  GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149
           GIL MFAAK+GA +VIGIECS+I +YA +IV  N L  VVTI+KGKVEEVELP  ++KVD
Sbjct: 100 GILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELP--VEKVD 157

Query: 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQC 209
           IIISEWMGYCLFYESML+TVL+ARDKWLA +GL+FPD                       
Sbjct: 158 IIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD----------------------- 194

Query: 210 VRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVT 269
                  +A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT
Sbjct: 195 -------RATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVT 247

Query: 270 SSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA 329
           ++CL+KE+D+YT+   DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+
Sbjct: 248 NACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPES 307

Query: 330 HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESND 389
            YTHWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S D
Sbjct: 308 PYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTD 367

Query: 390 YQV 392
           Y++
Sbjct: 368 YRM 370

Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in proteins such as ESR1, histone H2, H3 and H4, PIAS1, HNRNPA1, HNRNPD, NFATC2IP, SUPT5H, TAF15 and EWS. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Together with dimethylated PIAS1, represses STAT1 transcriptional activity, in the late phase of interferon gamma (IFN-gamma) signaling. May be involved in the regulation of TAF15 transcriptional activity, act as an activator of estrogen receptor (ER)-mediated transactivation, play a key role in neurite outgrowth and act as a negative regulator of megakaryocytic differentiation, by modulating p38 MAPK pathway.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 5

>sp|Q63009|ANM1_RAT Protein arginine N-methyltransferase 1 OS=Rattus norvegicus GN=Prmt1 PE=1 SV=1

 Score =  514 bits (1324), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 239/363 (65%), Positives = 295/363 (81%), Gaps = 32/363 (8%)

Query: 30  ENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGT 89
           E    EDMTS+DYYFDSYAHFGIHEEMLKDEVRT+TYRNSM+HN+HLFK K+VLD+G GT
Sbjct: 22  EKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGT 81

Query: 90  GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149
           GIL MFAAK+GA +VIGIECS+I +YA +IV  N L  VVTI+KGKVEEVELP  ++KVD
Sbjct: 82  GILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELP--VEKVD 139

Query: 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQC 209
           IIISEWMGYCLFYESML+TVL+ARDKWLA +GL+FPD                       
Sbjct: 140 IIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD----------------------- 176

Query: 210 VRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVT 269
                  +A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT
Sbjct: 177 -------RATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVT 229

Query: 270 SSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA 329
           ++CL+KE+D+YT+   DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+
Sbjct: 230 NACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPES 289

Query: 330 HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESND 389
            YTHWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S D
Sbjct: 290 PYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTD 349

Query: 390 YQV 392
           Y++
Sbjct: 350 YRM 352

Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in proteins such as ESR1, histone H2, H3 and H4, PIAS1, HNRNPA1, HNRNPD, NFATC2IP, SUPT5H, TAF15 and EWS. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Together with dimethylated PIAS1, represses STAT1 transcriptional activity, in the late phase of interferon gamma (IFN-gamma) signaling. May be involved in the regulation of TAF15 transcriptional activity, act as an activator of estrogen receptor (ER)-mediated transactivation, play a key role in neurite outgrowth and act as a negative regulator of megakaryocytic differentiation, by modulating p38 MAPK pathway.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 5

>sp|Q8AV13|ANM1A_XENLA Protein arginine N-methyltransferase 1-A OS=Xenopus laevis GN=prmt1-a PE=1 SV=1

 Score =  511 bits (1315), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/376 (64%), Positives = 298/376 (79%), Gaps = 37/376 (9%)

Query: 17  NSKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHL 76
           NS P +  G  K      EDMTS+DYYFDSYAHFGIHEEMLKDEVRT+TYRNSM+HN+HL
Sbjct: 30  NSAPPE--GGVK---TNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHL 84

Query: 77  FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKV 136
           FK K+VLD+G GTGIL MFAAK+GA +VIGIECS+I +YA +IV  N L  VVTI+KGKV
Sbjct: 85  FKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIVKANKLDHVVTIIKGKV 144

Query: 137 EEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIE 196
           EEVELP  ++KVDIIISEWMGYCLFYESML+TV+YARDKWL  +GL+FPD          
Sbjct: 145 EEVELP--VEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGLIFPD---------- 192

Query: 197 DLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKE 256
                               +A+L+I  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKE
Sbjct: 193 --------------------RATLYITAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKE 232

Query: 257 PLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSK 316
           PLVDVVDPKQ+V+++CL+KE+D+YT+   DLSFTSPF LQV+RNDY+ ALV +F++EF++
Sbjct: 233 PLVDVVDPKQLVSNACLIKEVDIYTVKVDDLSFTSPFCLQVKRNDYIHALVAYFNIEFTR 292

Query: 317 CHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVN 376
           CHKR GFST+PE+ YTHWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT +++
Sbjct: 293 CHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMKPNAKNNRDLDFTFDID 352

Query: 377 FKGELCEMSESNDYQV 392
           FKG+LCE+S S DY++
Sbjct: 353 FKGQLCELSCSTDYRM 368

Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates ilf3 to regulate its DNA-binding activity. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice. Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 5

>sp|Q28F07|ANM1_XENTR Protein arginine N-methyltransferase 1 OS=Xenopus tropicalis GN=prmt1 PE=2 SV=1

 Score =  511 bits (1315), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 236/358 (65%), Positives = 292/358 (81%), Gaps = 32/358 (8%)

Query: 35  EDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSM 94
           EDMTS+DYYFDSYAHFGIHEEMLKDEVRT+TYRNSM+HN+HLFK K+VLD+G GTGIL M
Sbjct: 25  EDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCM 84

Query: 95  FAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154
           FAAK+GA +VIGIECS+I +YA +IV  N L  VVTI+KGKVEEVELP  ++KVDIIISE
Sbjct: 85  FAAKAGAKKVIGIECSSISDYAIKIVKANKLDHVVTIIKGKVEEVELP--VEKVDIIISE 142

Query: 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLF 214
           WMGYCLFYESML+TV+YARDKWL  +GL+FPD                            
Sbjct: 143 WMGYCLFYESMLNTVIYARDKWLTPDGLIFPD---------------------------- 174

Query: 215 PDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLL 274
             +A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT++CL+
Sbjct: 175 --RATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLI 232

Query: 275 KEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHW 334
           KE+D+YT+   DL+FTSPF LQV+RNDY+ ALV +F++EF++CHKR GFST+PE+ YTHW
Sbjct: 233 KEVDIYTVKVDDLTFTSPFCLQVKRNDYIHALVAYFNIEFTRCHKRTGFSTSPESPYTHW 292

Query: 335 KQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQV 392
           KQTVFY+ ++LTVK GEE+ G+  M+PN +NNRDLDFTV+++FKG+LCE+S S DY++
Sbjct: 293 KQTVFYMEDYLTVKTGEEIFGTISMKPNAKNNRDLDFTVDIDFKGQLCELSCSTDYRM 350

Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates ilf3 to regulate its DNA-binding activity. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice (By similarity). Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 5

>sp|Q6VRB0|ANM1B_XENLA Protein arginine N-methyltransferase 1-B OS=Xenopus laevis GN=prmt1-b PE=2 SV=1

 Score =  507 bits (1306), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 234/358 (65%), Positives = 292/358 (81%), Gaps = 32/358 (8%)

Query: 35  EDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSM 94
           EDMTS+DYYFDSYAHFGIHEEMLKDEVRT+TYRNSM+HN+HLFK K+VLD+G GTGIL M
Sbjct: 25  EDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCM 84

Query: 95  FAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154
           FAAK+GA +VIGIECS+I +YA +IV  N L  VVTI+KGKVEEVELP  ++KVDIIISE
Sbjct: 85  FAAKAGAKKVIGIECSSISDYAIKIVKANKLDHVVTIIKGKVEEVELP--VEKVDIIISE 142

Query: 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLF 214
           WMGYCLFYESML+TV+YARDKWL  +GL+FPD                            
Sbjct: 143 WMGYCLFYESMLNTVIYARDKWLNPDGLIFPD---------------------------- 174

Query: 215 PDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLL 274
             +A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+V+++CL+
Sbjct: 175 --RATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVSNACLI 232

Query: 275 KEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHW 334
           KE+D+YT+   DL+FTSPF LQV+RNDY+ A+V +F++EF++CHKR GFST+PE+ YTHW
Sbjct: 233 KEVDIYTVKVDDLTFTSPFCLQVKRNDYIHAMVAYFNIEFTRCHKRTGFSTSPESPYTHW 292

Query: 335 KQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQV 392
           KQTVFY+ ++LTVK GEE+ G+  M+PN +NNRDLDFTV+++FKG+LCE+S S DY++
Sbjct: 293 KQTVFYMEDYLTVKTGEEIFGTISMKPNAKNNRDLDFTVDIDFKGQLCELSCSTDYRM 350

Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators (By similarity). Methylates ilf3 to regulate its DNA-binding activity. Methylates histone H4. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 5

>sp|Q6PAK3|ANM8_MOUSE Protein arginine N-methyltransferase 8 OS=Mus musculus GN=Prmt8 PE=2 SV=2

 Score =  506 bits (1304), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 233/376 (61%), Positives = 301/376 (80%), Gaps = 32/376 (8%)

Query: 17  NSKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHL 76
           +++PS        + +  E+MTSRDYYFDSYAHFGIHEEMLKDEVRT+TYRNSMYHNKH+
Sbjct: 50  STQPSCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHV 109

Query: 77  FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKV 136
           FK K+VLD+G GTGILSMFAAK+GA +V GIECS+I +Y+++I+  N+L +V+TI KGKV
Sbjct: 110 FKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNVITIFKGKV 169

Query: 137 EEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIE 196
           EEVELP  ++KVDIIISEWMGYCLFYESML+TV++ARDKWL   GL+FPD          
Sbjct: 170 EEVELP--VEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPD---------- 217

Query: 197 DLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKE 256
                               +A+L++  IEDRQYK+ KI WW+NVYGFDM+CI+ +A+KE
Sbjct: 218 --------------------RAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKE 257

Query: 257 PLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSK 316
           PLVD+VDPKQVVT++CL+KE+D+YT+   +LSFTS F LQ++RNDYV ALVT+F++EF+K
Sbjct: 258 PLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTK 317

Query: 317 CHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVN 376
           CHK++GFSTAP+A YTHWKQTVFYL ++LTV++GEE+ G+  M+PN +N RDLDFTV+++
Sbjct: 318 CHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLD 377

Query: 377 FKGELCEMSESNDYQV 392
           FKG+LCE S SNDY++
Sbjct: 378 FKGQLCETSVSNDYKM 393

Membrane-associated arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Able to mono- and dimethylate EWS protein; however its precise role toward EWS remains unclear as it still interacts with fully methylated EWS.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9NR22|ANM8_HUMAN Protein arginine N-methyltransferase 8 OS=Homo sapiens GN=PRMT8 PE=1 SV=2

 Score =  506 bits (1303), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 232/376 (61%), Positives = 301/376 (80%), Gaps = 32/376 (8%)

Query: 17  NSKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHL 76
           +++PS        + +  E+MTSRDYYFDSYAHFGIHEEMLKDEVRT+TYRNSMYHNKH+
Sbjct: 50  STQPSCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHV 109

Query: 77  FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKV 136
           FK K+VLD+G GTGILSMFAAK+GA +V GIECS+I +Y+++I+  N+L +++TI KGKV
Sbjct: 110 FKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNIITIFKGKV 169

Query: 137 EEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIE 196
           EEVELP  ++KVDIIISEWMGYCLFYESML+TV++ARDKWL   GL+FPD          
Sbjct: 170 EEVELP--VEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPD---------- 217

Query: 197 DLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKE 256
                               +A+L++  IEDRQYK+ KI WW+NVYGFDM+CI+ +A+KE
Sbjct: 218 --------------------RAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKE 257

Query: 257 PLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSK 316
           PLVD+VDPKQVVT++CL+KE+D+YT+   +LSFTS F LQ++RNDYV ALVT+F++EF+K
Sbjct: 258 PLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTK 317

Query: 317 CHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVN 376
           CHK++GFSTAP+A YTHWKQTVFYL ++LTV++GEE+ G+  M+PN +N RDLDFTV+++
Sbjct: 318 CHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLD 377

Query: 377 FKGELCEMSESNDYQV 392
           FKG+LCE S SNDY++
Sbjct: 378 FKGQLCETSVSNDYKM 393

Membrane-associated arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Able to mono- and dimethylate EWS protein; however its precise role toward EWS remains unclear as it still interacts with fully methylated EWS.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5RGQ2|ANM8B_DANRE Protein arginine N-methyltransferase 8-B OS=Danio rerio GN=prmt8b PE=2 SV=2

 Score =  494 bits (1272), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 229/358 (63%), Positives = 286/358 (79%), Gaps = 32/358 (8%)

Query: 35  EDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSM 94
           E+MTSRDYYFDSYAHFGIHEEMLKDEVRT+TYRNSMYHNKH+FK KIVLD+G GTGILSM
Sbjct: 93  EEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHIFKDKIVLDVGSGTGILSM 152

Query: 95  FAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154
           FAAK+GA  V GIECS+I EY+++I+  N+L  V+TILKGKVEE ELP  + +VDIIISE
Sbjct: 153 FAAKAGAKHVYGIECSSISEYSEKIIKSNHLDSVITILKGKVEETELP--VDQVDIIISE 210

Query: 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLF 214
           WMGYCLFYESML+TV+YARDKWL   G +FPD                            
Sbjct: 211 WMGYCLFYESMLNTVIYARDKWLKPGGFMFPD---------------------------- 242

Query: 215 PDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLL 274
             +A+L++  IEDRQYK+ KI WW+NVYGFDM+CI+ +A+ EPLVD+VDPKQVVT+SCL+
Sbjct: 243 --RATLYVVAIEDRQYKDFKIHWWENVYGFDMTCIRNVAMMEPLVDIVDPKQVVTNSCLV 300

Query: 275 KEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHW 334
           KE+D+YT+   DLSFTS F LQ++RNDYV ALVT+F++EF+KCHK+ GFSTAP+A  THW
Sbjct: 301 KEVDIYTVKTEDLSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKTGFSTAPDAPSTHW 360

Query: 335 KQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQV 392
           KQTVFYL ++LTV++GEE++GS  ++PN  N RDLDFT E++FKG+LC+ + S+DY++
Sbjct: 361 KQTVFYLEDYLTVRRGEEILGSITVRPNENNERDLDFTFELDFKGQLCDAAISHDYKM 418

Membrane-associated arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Able to mono- and dimethylate ews protein; however its precise role toward ews remains unclear as it still interacts with fully methylated ews.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SU94|ANM11_ARATH Protein arginine N-methyltransferase 1.1 OS=Arabidopsis thaliana GN=PRMT11 PE=1 SV=1

 Score =  404 bits (1039), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/368 (53%), Positives = 253/368 (68%), Gaps = 32/368 (8%)

Query: 25  GDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLD 84
           G+S D     +D TS DYYFDSY+HFGIHEEMLKD VRT TY+N +Y NK L K KIVLD
Sbjct: 54  GESADTAEVTDDTTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKFLIKDKIVLD 113

Query: 85  IGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFG 144
           +G GTGILS+F AK+GAA V  +ECS + + AKEIV  N  SDV+T+LKGK+EE+ELP  
Sbjct: 114 VGAGTGILSLFCAKAGAAHVYAVECSQMADMAKEIVKANGFSDVITVLKGKIEEIELP-- 171

Query: 145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDH 204
             KVD+IISEWMGY L +E+MLD+VLYARDKWL                    ++GG   
Sbjct: 172 TPKVDVIISEWMGYFLLFENMLDSVLYARDKWL--------------------VEGG--- 208

Query: 205 VVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDP 264
                  V+ PDKASL +  IED +YKEDKI +W++VYGFDMSCIKK A+ EPLVD VD 
Sbjct: 209 -------VVLPDKASLHLTAIEDSEYKEDKIEFWNSVYGFDMSCIKKKAMMEPLVDTVDQ 261

Query: 265 KQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFS 324
            Q+VT S LLK +D+  ++  D SFT+PF L  +RNDY+ ALV +F V F+ CHK +GFS
Sbjct: 262 NQIVTDSRLLKTMDISKMSSGDASFTAPFKLVAQRNDYIHALVAYFDVSFTMCHKLLGFS 321

Query: 325 TAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEM 384
           T P++  THWKQTV YL + LT+ +GE + G+  + PN +N RD+D  +  +  G+ C++
Sbjct: 322 TGPKSRATHWKQTVLYLEDVLTICEGETITGTMSVSPNKKNPRDIDIKLSYSLNGQHCKI 381

Query: 385 SESNDYQV 392
           S +  Y++
Sbjct: 382 SRTQHYKM 389

Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain. Type I arginine methyltransferase active on both histones and non-histone proteins. Required for leaves and flowers development. Mediates the methylation of MBD7.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	519
332027973	382	Protein arginine N-methyltransferase 8 [	0.653	0.887	0.728	1e-161
307198020	382	Protein arginine N-methyltransferase 8 [	0.664	0.903	0.715	1e-161
383859435	382	PREDICTED: protein arginine N-methyltran	0.641	0.871	0.735	1e-161
322786722	383	hypothetical protein SINV_07585 [Solenop	0.685	0.929	0.693	1e-161
340713974	382	PREDICTED: protein arginine N-methyltran	0.670	0.910	0.710	1e-161
350418859	382	PREDICTED: protein arginine N-methyltran	0.670	0.910	0.710	1e-161
350418862	364	PREDICTED: protein arginine N-methyltran	0.689	0.983	0.697	1e-161
307187153	357	Protein arginine N-methyltransferase 8 [	0.641	0.932	0.735	1e-160
328784318	379	PREDICTED: protein arginine N-methyltran	0.637	0.873	0.721	1e-156
321473398	355	hypothetical protein DAPPUDRAFT_127740 [	0.674	0.985	0.678	1e-155

>gi|332027973|gb|EGI68024.1| Protein arginine N-methyltransferase 8 [Acromyrmex echinatior]

 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 269/369 (72%), Positives = 314/369 (85%), Gaps = 30/369 (8%)

Query: 24  NGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVL 83
           N  S  E+V  +DMTSRDYYFDSYAH+GIHEEMLKDEVRT+TYRNSMYHNKHLFKGK VL
Sbjct: 43  NAQSCRESVSVDDMTSRDYYFDSYAHYGIHEEMLKDEVRTVTYRNSMYHNKHLFKGKTVL 102

Query: 84  DIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF 143
           DIGCGTGILSMFAAK+GAA+VIGIECSNIVEYA++IV+ NNLS+V+TILKGKVEEV LP 
Sbjct: 103 DIGCGTGILSMFAAKAGAAKVIGIECSNIVEYAEKIVEANNLSNVITILKGKVEEVSLPD 162

Query: 144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQD 203
           GI+KVDIIISEWMGYCLFYESMLDTVL+ARDKWL  +G+LFP                  
Sbjct: 163 GIEKVDIIISEWMGYCLFYESMLDTVLFARDKWLREDGMLFP------------------ 204

Query: 204 HVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVD 263
                       DKA+LFICGIEDRQYK++KI WWD+VYGFDMS I+K+AI EPLVDVVD
Sbjct: 205 ------------DKATLFICGIEDRQYKDEKINWWDDVYGFDMSSIRKVAISEPLVDVVD 252

Query: 264 PKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGF 323
           PKQVVT++CL+KE+DLYT+TKADL F+SPFTLQVRRNDYVQALVTFF++EF+KCHKRIGF
Sbjct: 253 PKQVVTNACLIKEVDLYTVTKADLEFSSPFTLQVRRNDYVQALVTFFNIEFTKCHKRIGF 312

Query: 324 STAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCE 383
           STAPE  YTHWKQTVFY +E++TVKKGEE+ G F M+PN RN RDLDF++E++FKGELC+
Sbjct: 313 STAPEVPYTHWKQTVFYFDEYMTVKKGEEIYGVFSMRPNARNYRDLDFSIELDFKGELCQ 372

Query: 384 MSESNDYQV 392
           + E+N+Y++
Sbjct: 373 VHETNNYRM 381

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198020|gb|EFN79080.1| Protein arginine N-methyltransferase 8 [Harpegnathos saltator]

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 271/379 (71%), Positives = 318/379 (83%), Gaps = 34/379 (8%)

Query: 18  SKPSQQNGD----SKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHN 73
           ++P+  N D    S  E++  +DMTSRDYYFDSYAH+GIHEEMLKDEVRT+TYRNSMYHN
Sbjct: 33  AEPTTVNKDVSASSCRESISVDDMTSRDYYFDSYAHYGIHEEMLKDEVRTVTYRNSMYHN 92

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILK 133
           KHLFKGK VLDIGCGTGILSMFAAK+GAARVIGIECSNIVEYA++IV+ NNLS+V+TILK
Sbjct: 93  KHLFKGKTVLDIGCGTGILSMFAAKAGAARVIGIECSNIVEYAEKIVEANNLSNVITILK 152

Query: 134 GKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFIC 193
           GKVEEV LP GI+KVDIIISEWMGYCLFYESMLDTVL+ARDKWL  +G+LFP        
Sbjct: 153 GKVEEVSLPDGIEKVDIIISEWMGYCLFYESMLDTVLFARDKWLRDDGMLFP-------- 204

Query: 194 GIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIA 253
                                 DKA+LFICGIEDRQYK++KI WWD+VYGFDMS I+K+A
Sbjct: 205 ----------------------DKATLFICGIEDRQYKDEKINWWDDVYGFDMSSIRKVA 242

Query: 254 IKEPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVE 313
           I EPLVDVVDPKQVVT++CL+KE+DLYT+TKADL F+SPFTLQVRRNDYVQALVTFF++E
Sbjct: 243 ISEPLVDVVDPKQVVTNACLIKEVDLYTVTKADLEFSSPFTLQVRRNDYVQALVTFFNIE 302

Query: 314 FSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTV 373
           F+KCHKRIGFSTAPE  YTHWKQTVFY +E++TVKKGEE+ G F M+PN RN RDLDF++
Sbjct: 303 FTKCHKRIGFSTAPEVPYTHWKQTVFYFDEYMTVKKGEEIYGVFSMRPNARNYRDLDFSI 362

Query: 374 EVNFKGELCEMSESNDYQV 392
           E++FKGELC++ E+N Y++
Sbjct: 363 ELDFKGELCQVHETNTYRM 381

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859435|ref|XP_003705200.1| PREDICTED: protein arginine N-methyltransferase 8-like [Megachile rotundata]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 267/363 (73%), Positives = 310/363 (85%), Gaps = 30/363 (8%)

Query: 30  ENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGT 89
           E+V  +DMTSRDYYFDSYAH+GIHEEMLKDEVRT+TYRNSMYHNKHLFKGK VLDIGCGT
Sbjct: 49  ESVSVDDMTSRDYYFDSYAHYGIHEEMLKDEVRTVTYRNSMYHNKHLFKGKTVLDIGCGT 108

Query: 90  GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149
           GILSMFAAK+GAARVIGIECSNIVEYA++IV+ N LS+V+TILKGKVEEV LP GI+KVD
Sbjct: 109 GILSMFAAKAGAARVIGIECSNIVEYAEKIVEANQLSNVITILKGKVEEVSLPDGIEKVD 168

Query: 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQC 209
           IIISEWMGYCLFYESMLDTVL+ARDKWL  +G+LFP                        
Sbjct: 169 IIISEWMGYCLFYESMLDTVLFARDKWLREDGMLFP------------------------ 204

Query: 210 VRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVT 269
                 DKA+LFICGIEDRQYK++KI WWD+VYGFDMS I+K+AI EPLVDVVDPKQVVT
Sbjct: 205 ------DKATLFICGIEDRQYKDEKINWWDDVYGFDMSSIRKVAISEPLVDVVDPKQVVT 258

Query: 270 SSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA 329
           ++CL+KE+DLYT+TKADL F+SPFTLQVRRNDYVQALVTFF++EF+KCHKRIGFSTAPE 
Sbjct: 259 NACLIKEVDLYTVTKADLEFSSPFTLQVRRNDYVQALVTFFNIEFTKCHKRIGFSTAPEV 318

Query: 330 HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESND 389
            YTHWKQTVFY +E++TVKKGEE+ G F M+PN RN RDLDF++E++FKGELC++ E+N 
Sbjct: 319 QYTHWKQTVFYFDEYMTVKKGEEIYGVFSMKPNARNYRDLDFSIELDFKGELCQVHETNT 378

Query: 390 YQV 392
           Y++
Sbjct: 379 YRM 381

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786722|gb|EFZ13091.1| hypothetical protein SINV_07585 [Solenopsis invicta]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 271/391 (69%), Positives = 323/391 (82%), Gaps = 35/391 (8%)

Query: 7   SRSGYDAKSSNSKPSQQNGDSKD-----ENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEV 61
           S S  ++    ++P+  N ++       E+V  +DMTSRDYYFDSYAH+GIHEEMLKDEV
Sbjct: 22  STSKMESMDIATEPTTMNKNASSVPSCRESVSVDDMTSRDYYFDSYAHYGIHEEMLKDEV 81

Query: 62  RTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVD 121
           RT+TYRNSMYHNKHLFKGK VLDIGCGTGILSMFAAK+GAA+VIGIECSNIVEYA++IV+
Sbjct: 82  RTVTYRNSMYHNKHLFKGKTVLDIGCGTGILSMFAAKAGAAKVIGIECSNIVEYAEKIVE 141

Query: 122 KNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNG 181
            NNLS+V+TILKGKVEEV LP GI+KVDIIISEWMGYCLFYESMLDTVL+ARDKWL  +G
Sbjct: 142 ANNLSNVITILKGKVEEVSLPDGIEKVDIIISEWMGYCLFYESMLDTVLFARDKWLREDG 201

Query: 182 LLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNV 241
           +LFP                              DKA+LFICGIEDRQYK++KI WWD+V
Sbjct: 202 MLFP------------------------------DKATLFICGIEDRQYKDEKINWWDDV 231

Query: 242 YGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRND 301
           YGFDMS I+K+AI EPLVDVVDPKQVVT++CL+KE+DLYT+TKADL F+SPFTLQVRRND
Sbjct: 232 YGFDMSSIRKVAISEPLVDVVDPKQVVTNACLIKEVDLYTVTKADLEFSSPFTLQVRRND 291

Query: 302 YVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQP 361
           YVQALVTFF++EF+KCHKRIGFSTAPE  YTHWKQTVFY +E++TVKKGEE+ G F M+P
Sbjct: 292 YVQALVTFFNIEFTKCHKRIGFSTAPEVPYTHWKQTVFYFDEYMTVKKGEEIYGVFSMRP 351

Query: 362 NPRNNRDLDFTVEVNFKGELCEMSESNDYQV 392
           N RN RDLDF++E++FKGELC++ E+N+Y++
Sbjct: 352 NARNYRDLDFSIELDFKGELCQVHETNNYRM 382

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713974|ref|XP_003395508.1| PREDICTED: protein arginine N-methyltransferase 8-like isoform 1 [Bombus terrestris] gi|340713976|ref|XP_003395509.1| PREDICTED: protein arginine N-methyltransferase 8-like isoform 2 [Bombus terrestris]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 270/380 (71%), Positives = 317/380 (83%), Gaps = 32/380 (8%)

Query: 15  SSNSKPSQQNG--DSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYH 72
           + NS  S ++    S  E++  +DMTSRDYYFDSYAH+GIHEEMLKDEVRT+TYRNSMYH
Sbjct: 32  TENSTASNKDATPSSCRESISVDDMTSRDYYFDSYAHYGIHEEMLKDEVRTVTYRNSMYH 91

Query: 73  NKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTIL 132
           NKHLFKGK VLDIGCGTGILSMFAAK+GAARVIGIECSNIVEYA++IV+ N LS+V+TIL
Sbjct: 92  NKHLFKGKTVLDIGCGTGILSMFAAKAGAARVIGIECSNIVEYAEKIVEANQLSNVITIL 151

Query: 133 KGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFI 192
           KGKVEEV LP GI+KVDIIISEWMGYCLFYESMLDTVL+ARDKWL  +G+LFP       
Sbjct: 152 KGKVEEVSLPDGIEKVDIIISEWMGYCLFYESMLDTVLFARDKWLREDGMLFP------- 204

Query: 193 CGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKI 252
                                  DKA+LFICGIEDRQYK++KI WWD+VYGFDMS I+K+
Sbjct: 205 -----------------------DKATLFICGIEDRQYKDEKINWWDDVYGFDMSSIRKV 241

Query: 253 AIKEPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSV 312
           AI EPLVDVVDPKQVVT++CL+KE+DLYT+TKADL F+SPFTLQVRRNDYVQALVTFF++
Sbjct: 242 AISEPLVDVVDPKQVVTNACLIKEVDLYTVTKADLEFSSPFTLQVRRNDYVQALVTFFNI 301

Query: 313 EFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFT 372
           EF+KCHKRIGFSTAPE  YTHWKQTVFY +E++TVKKGEE+ G F M+PN RN RDLDF+
Sbjct: 302 EFTKCHKRIGFSTAPEVQYTHWKQTVFYFDEYMTVKKGEEIYGVFSMKPNARNYRDLDFS 361

Query: 373 VEVNFKGELCEMSESNDYQV 392
           +E++FKGELC++ E+N Y++
Sbjct: 362 IELDFKGELCQVHETNTYRM 381

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418859|ref|XP_003491992.1| PREDICTED: protein arginine N-methyltransferase 8-like isoform 1 [Bombus impatiens]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 270/380 (71%), Positives = 317/380 (83%), Gaps = 32/380 (8%)

Query: 15  SSNSKPSQQNG--DSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYH 72
           + NS  S ++    S  E++  +DMTSRDYYFDSYAH+GIHEEMLKDEVRT+TYRNSMYH
Sbjct: 32  TENSTASNKDATPSSCRESISVDDMTSRDYYFDSYAHYGIHEEMLKDEVRTVTYRNSMYH 91

Query: 73  NKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTIL 132
           NKHLFKGK VLDIGCGTGILSMFAAK+GAARVIGIECSNIVEYA++IV+ N LS+V+TIL
Sbjct: 92  NKHLFKGKTVLDIGCGTGILSMFAAKAGAARVIGIECSNIVEYAEKIVEANQLSNVITIL 151

Query: 133 KGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFI 192
           KGKVEEV LP GI+KVDIIISEWMGYCLFYESMLDTVL+ARDKWL  +G+LFP       
Sbjct: 152 KGKVEEVSLPDGIEKVDIIISEWMGYCLFYESMLDTVLFARDKWLCEDGMLFP------- 204

Query: 193 CGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKI 252
                                  DKA+LFICGIEDRQYK++KI WWD+VYGFDMS I+K+
Sbjct: 205 -----------------------DKATLFICGIEDRQYKDEKINWWDDVYGFDMSSIRKV 241

Query: 253 AIKEPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSV 312
           AI EPLVDVVDPKQVVT++CL+KE+DLYT+TKADL F+SPFTLQVRRNDYVQALVTFF++
Sbjct: 242 AISEPLVDVVDPKQVVTNACLIKEVDLYTVTKADLEFSSPFTLQVRRNDYVQALVTFFNI 301

Query: 313 EFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFT 372
           EF+KCHKRIGFSTAPE  YTHWKQTVFY +E++TVKKGEE+ G F M+PN RN RDLDF+
Sbjct: 302 EFTKCHKRIGFSTAPEVQYTHWKQTVFYFDEYMTVKKGEEIYGVFSMKPNARNYRDLDFS 361

Query: 373 VEVNFKGELCEMSESNDYQV 392
           +E++FKGELC++ E+N Y++
Sbjct: 362 IELDFKGELCQVHETNTYRM 381

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418862|ref|XP_003491993.1| PREDICTED: protein arginine N-methyltransferase 8-like isoform 2 [Bombus impatiens]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 272/390 (69%), Positives = 321/390 (82%), Gaps = 32/390 (8%)

Query: 5   IISRSGYDAKSSNSKPSQQNG--DSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVR 62
           I+S+      + NS  S ++    S  E++  +DMTSRDYYFDSYAH+GIHEEMLKDEVR
Sbjct: 4   IVSKMESMEVTENSTASNKDATPSSCRESISVDDMTSRDYYFDSYAHYGIHEEMLKDEVR 63

Query: 63  TMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDK 122
           T+TYRNSMYHNKHLFKGK VLDIGCGTGILSMFAAK+GAARVIGIECSNIVEYA++IV+ 
Sbjct: 64  TVTYRNSMYHNKHLFKGKTVLDIGCGTGILSMFAAKAGAARVIGIECSNIVEYAEKIVEA 123

Query: 123 NNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGL 182
           N LS+V+TILKGKVEEV LP GI+KVDIIISEWMGYCLFYESMLDTVL+ARDKWL  +G+
Sbjct: 124 NQLSNVITILKGKVEEVSLPDGIEKVDIIISEWMGYCLFYESMLDTVLFARDKWLCEDGM 183

Query: 183 LFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVY 242
           LFP                              DKA+LFICGIEDRQYK++KI WWD+VY
Sbjct: 184 LFP------------------------------DKATLFICGIEDRQYKDEKINWWDDVY 213

Query: 243 GFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDY 302
           GFDMS I+K+AI EPLVDVVDPKQVVT++CL+KE+DLYT+TKADL F+SPFTLQVRRNDY
Sbjct: 214 GFDMSSIRKVAISEPLVDVVDPKQVVTNACLIKEVDLYTVTKADLEFSSPFTLQVRRNDY 273

Query: 303 VQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPN 362
           VQALVTFF++EF+KCHKRIGFSTAPE  YTHWKQTVFY +E++TVKKGEE+ G F M+PN
Sbjct: 274 VQALVTFFNIEFTKCHKRIGFSTAPEVQYTHWKQTVFYFDEYMTVKKGEEIYGVFSMKPN 333

Query: 363 PRNNRDLDFTVEVNFKGELCEMSESNDYQV 392
            RN RDLDF++E++FKGELC++ E+N Y++
Sbjct: 334 ARNYRDLDFSIELDFKGELCQVHETNTYRM 363

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187153|gb|EFN72396.1| Protein arginine N-methyltransferase 8 [Camponotus floridanus]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 267/363 (73%), Positives = 312/363 (85%), Gaps = 30/363 (8%)

Query: 30  ENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGT 89
           E+V  +DMTSRDYYFDSYAH+GIHEEMLKDEVRT+TYRNSMYHNKHLFKGK VLDIGCGT
Sbjct: 24  ESVSVDDMTSRDYYFDSYAHYGIHEEMLKDEVRTVTYRNSMYHNKHLFKGKTVLDIGCGT 83

Query: 90  GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149
           GILSMFAAK+GAA+VIGIECSNIVEYA++IV+ NNLS+V+TILKGKVEEV LP GI+KVD
Sbjct: 84  GILSMFAAKAGAAKVIGIECSNIVEYAEKIVEANNLSNVITILKGKVEEVSLPDGIEKVD 143

Query: 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQC 209
           IIISEWMGYCLFYESMLDTVL+ARDKWL  +G+LFP                        
Sbjct: 144 IIISEWMGYCLFYESMLDTVLFARDKWLREDGMLFP------------------------ 179

Query: 210 VRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVT 269
                 DKA+LFICGIEDRQYK++KI WWD+VYGFDMS I+K+AI EPLVDVVDPKQVVT
Sbjct: 180 ------DKATLFICGIEDRQYKDEKINWWDDVYGFDMSSIRKVAISEPLVDVVDPKQVVT 233

Query: 270 SSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA 329
           ++CL+KE+DLYT+TKADL F+SPFTLQVRRNDYVQALVTFF++EF+KCHKRIGFSTAPE 
Sbjct: 234 NACLIKEVDLYTVTKADLEFSSPFTLQVRRNDYVQALVTFFNIEFTKCHKRIGFSTAPEV 293

Query: 330 HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESND 389
            YTHWKQTVFY +E++TVKKGEE+ G F M+PN RN RDLDF++E++FKGELC++ E+N+
Sbjct: 294 PYTHWKQTVFYFDEYMTVKKGEEIYGVFSMRPNARNYRDLDFSIELDFKGELCQVHETNN 353

Query: 390 YQV 392
           Y++
Sbjct: 354 YRM 356

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784318|ref|XP_001121222.2| PREDICTED: protein arginine N-methyltransferase 8 [Apis mellifera]

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 262/363 (72%), Positives = 306/363 (84%), Gaps = 32/363 (8%)

Query: 30  ENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGT 89
           E++  +DMTSRDYYFDSYAH+GIHEEMLKDEVRT+TYRNSMYHNKHLFKGK VLDIGCGT
Sbjct: 48  ESISVDDMTSRDYYFDSYAHYGIHEEMLKDEVRTVTYRNSMYHNKHLFKGKTVLDIGCGT 107

Query: 90  GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149
           GILSMFAAK+GAARVIGIECSNIVEYA++IV+ N LS+V+TILKGKVEEV L    +KVD
Sbjct: 108 GILSMFAAKAGAARVIGIECSNIVEYAEKIVEANQLSNVITILKGKVEEVSL--XXEKVD 165

Query: 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQC 209
           IIISEWMGYCLFYESMLDTV +ARDKWL  +G+LFP                        
Sbjct: 166 IIISEWMGYCLFYESMLDTVPFARDKWLREDGMLFP------------------------ 201

Query: 210 VRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVT 269
                 DKA+LFICGIEDRQYK++KI WWD+VYGFDMS I+K+AI EPLVDVVDPKQVVT
Sbjct: 202 ------DKATLFICGIEDRQYKDEKINWWDDVYGFDMSSIRKVAISEPLVDVVDPKQVVT 255

Query: 270 SSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA 329
           ++CL+KE+DLYT+TKADL F+SPFTLQVRRNDYVQALVTFF++EF+KCHKRIGFSTAPE 
Sbjct: 256 NACLIKEVDLYTVTKADLEFSSPFTLQVRRNDYVQALVTFFNIEFTKCHKRIGFSTAPEV 315

Query: 330 HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESND 389
            YTHWKQTVFY +E++TVKKGEE+ G F M+PN RN RDLDF++E++FKGELC++ E+N 
Sbjct: 316 QYTHWKQTVFYFDEYMTVKKGEEIYGVFSMKPNARNYRDLDFSIELDFKGELCQVHETNT 375

Query: 390 YQV 392
           Y++
Sbjct: 376 YRM 378

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321473398|gb|EFX84365.1| hypothetical protein DAPPUDRAFT_127740 [Daphnia pulex]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 258/380 (67%), Positives = 309/380 (81%), Gaps = 30/380 (7%)

Query: 13  AKSSNSKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYH 72
           A     KP   +G  K    + EDMTSRDYYFDSYAHFGIHEEMLKDEVRT+TYRNSMYH
Sbjct: 5   APVVEEKPDAADGTGKPVTEKKEDMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYH 64

Query: 73  NKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTIL 132
           NKHLFKGK+VLDIGCGTGILSMFAAK+GAARV GI+CS+IV  A EIV  N++ DV++I+
Sbjct: 65  NKHLFKGKVVLDIGCGTGILSMFAAKAGAARVFGIDCSDIVNQATEIVKANHMDDVISII 124

Query: 133 KGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFI 192
           KGKVEEVELP GI+KVDIIISEWMGYCLFYESML+T+L+ARDKWL  +GLLFP       
Sbjct: 125 KGKVEEVELPEGIEKVDIIISEWMGYCLFYESMLETILHARDKWLKPDGLLFP------- 177

Query: 193 CGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKI 252
                                  D+ASL++C IEDRQYK+DKI WWD VYGF+MSCI+K+
Sbjct: 178 -----------------------DRASLYVCAIEDRQYKDDKINWWDEVYGFNMSCIRKV 214

Query: 253 AIKEPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSV 312
           AI EPLVDVVDPKQVV++SCLLKE+DLYT+TK +L+F+SPF+LQ+RRNDYV ALVTFF++
Sbjct: 215 AITEPLVDVVDPKQVVSNSCLLKEVDLYTVTKDELAFSSPFSLQLRRNDYVHALVTFFTI 274

Query: 313 EFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFT 372
           EF+KCHKR+GFSTAP+A YTHWKQTVFYL+++LTVK+ EE+ G FGM+PN +NNRDLDF 
Sbjct: 275 EFTKCHKRMGFSTAPDAPYTHWKQTVFYLDDYLTVKRNEEIFGVFGMKPNAKNNRDLDFN 334

Query: 373 VEVNFKGELCEMSESNDYQV 392
           +E+NF GELC + E+N Y++
Sbjct: 335 IELNFTGELCTLQENNVYRM 354

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	519
FB|FBgn0037834	376	Art1 "Arginine methyltransfera	0.362	0.5	0.694	1.4e-146
UNIPROTKB|Q5E949	353	HRMT1L2 "HMT1 hnRNP methyltran	0.348	0.512	0.668	4.9e-142
UNIPROTKB|F6XFY9	371	PRMT1 "Uncharacterized protein	0.348	0.487	0.668	6.2e-142
UNIPROTKB|H7C2I1	371	PRMT1 "Protein arginine N-meth	0.348	0.487	0.668	6.2e-142
UNIPROTKB|Q99873	361	PRMT1 "Protein arginine N-meth	0.348	0.501	0.668	6.2e-142
RGD|62020	353	Prmt1 "protein arginine methyl	0.348	0.512	0.668	1.7e-141
MGI|MGI:107846	371	Prmt1 "protein arginine N-meth	0.348	0.487	0.668	2.1e-141
RGD|2320935	343	LOC100361025 "protein arginine	0.348	0.527	0.668	2.1e-141
UNIPROTKB|Q8AV13	369	prmt1-a "Protein arginine N-me	0.348	0.490	0.668	1.2e-140
UNIPROTKB|E2R6B6	374	PRMT1 "Uncharacterized protein	0.348	0.483	0.668	1.5e-140

FB|FBgn0037834 Art1 "Arginine methyltransferase 1" [Drosophila melanogaster (taxid:7227)]

 Score = 728 (261.3 bits), Expect = 1.4e-146, Sum P(2) = 1.4e-146
 Identities = 132/190 (69%), Positives = 163/190 (85%)

Query:    12 DAKSSN-SKPSQQNGDSKDE-NVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNS 69
             +A S+N +K     G + D  N   ++MTSRDYYFDSYAHFGIHEEMLKDEVRT+TYRN+
Sbjct:    23 NANSNNVAKKLPAEGSTGDNPNANADEMTSRDYYFDSYAHFGIHEEMLKDEVRTVTYRNA 82

Query:    70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVV 129
             MYHNKHLF+GK VLD+GCGTGILSMFAAK+GAA+VI ++CSNI+E+A+++V  NNL DV+
Sbjct:    83 MYHNKHLFQGKTVLDVGCGTGILSMFAAKAGAAQVIAVDCSNIIEFARQVVIDNNLQDVI 142

Query:   130 TILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189
             T++KGK+EE+ELP GI+ VDIIISEWMGYCLFYESMLDTVLYARDKWL  +G++FPD+ +
Sbjct:   143 TVVKGKIEEIELPNGIEGVDIIISEWMGYCLFYESMLDTVLYARDKWLKKDGMMFPDRGT 202

Query:   190 LFICGIEDLQ 199
             L+I  IED Q
Sbjct:   203 LYITAIEDRQ 212

GO:0016274 "protein-arginine N-methyltransferase activity" evidence=ISS

GO:0019919 "peptidyl-arginine methylation, to asymmetrical-dimethyl arginine" evidence=IDA

GO:0035242 "protein-arginine omega-N asymmetric methyltransferase activity" evidence=IDA

GO:0035241 "protein-arginine omega-N monomethyltransferase activity" evidence=IDA

GO:0042054 "histone methyltransferase activity" evidence=IDA

GO:0016571 "histone methylation" evidence=IDA

GO:0044020 "histone methyltransferase activity (H4-R3 specific)" evidence=IDA

GO:0043985 "histone H4-R3 methylation" evidence=IDA

UNIPROTKB|Q5E949 HRMT1L2 "HMT1 hnRNP methyltransferase-like 2 isoform 3" [Bos taurus (taxid:9913)]

 Score = 723 (259.6 bits), Expect = 4.9e-142, Sum P(2) = 4.9e-142
 Identities = 121/181 (66%), Positives = 161/181 (88%)

Query:   212 VLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSS 271
             ++FPD+A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT++
Sbjct:   172 LIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNA 231

Query:   272 CLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHY 331
             CL+KE+D+YT+   DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ Y
Sbjct:   232 CLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPY 291

Query:   332 THWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQ 391
             THWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DY+
Sbjct:   292 THWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYR 351

Query:   392 V 392
             +
Sbjct:   352 M 352

GO:0001701 "in utero embryonic development" evidence=ISS

GO:0008469 "histone-arginine N-methyltransferase activity" evidence=ISS

GO:0008276 "protein methyltransferase activity" evidence=ISS

GO:0006479 "protein methylation" evidence=ISS

GO:0045653 "negative regulation of megakaryocyte differentiation" evidence=IEA

GO:0044020 "histone methyltransferase activity (H4-R3 specific)" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F6XFY9 PRMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 723 (259.6 bits), Expect = 6.2e-142, Sum P(2) = 6.2e-142
 Identities = 121/181 (66%), Positives = 161/181 (88%)

Query:   212 VLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSS 271
             ++FPD+A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT++
Sbjct:   190 LIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNA 249

Query:   272 CLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHY 331
             CL+KE+D+YT+   DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ Y
Sbjct:   250 CLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPY 309

Query:   332 THWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQ 391
             THWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DY+
Sbjct:   310 THWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYR 369

Query:   392 V 392
             +
Sbjct:   370 M 370

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006479 "protein methylation" evidence=IEA

UNIPROTKB|H7C2I1 PRMT1 "Protein arginine N-methyltransferase 1" [Homo sapiens (taxid:9606)]

 Score = 723 (259.6 bits), Expect = 6.2e-142, Sum P(2) = 6.2e-142
 Identities = 121/181 (66%), Positives = 161/181 (88%)

Query:   212 VLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSS 271
             ++FPD+A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT++
Sbjct:   190 LIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNA 249

Query:   272 CLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHY 331
             CL+KE+D+YT+   DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ Y
Sbjct:   250 CLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPY 309

Query:   332 THWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQ 391
             THWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DY+
Sbjct:   310 THWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYR 369

Query:   392 V 392
             +
Sbjct:   370 M 370

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008469 "histone-arginine N-methyltransferase activity" evidence=IEA

GO:0016275 "[cytochrome c

GO:0030519 "snoRNP binding" evidence=IEA

GO:0035241 "protein-arginine omega-N monomethyltransferase activity" evidence=IEA

GO:0035242 "protein-arginine omega-N asymmetric methyltransferase activity" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

UNIPROTKB|Q99873 PRMT1 "Protein arginine N-methyltransferase 1" [Homo sapiens (taxid:9606)]

 Score = 723 (259.6 bits), Expect = 6.2e-142, Sum P(2) = 6.2e-142
 Identities = 121/181 (66%), Positives = 161/181 (88%)

Query:   212 VLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSS 271
             ++FPD+A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT++
Sbjct:   180 LIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNA 239

Query:   272 CLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHY 331
             CL+KE+D+YT+   DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ Y
Sbjct:   240 CLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPY 299

Query:   332 THWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQ 391
             THWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DY+
Sbjct:   300 THWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYR 359

Query:   392 V 392
             +
Sbjct:   360 M 360

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0016275 "[cytochrome c

GO:0030519 "snoRNP binding" evidence=IEA

GO:0035241 "protein-arginine omega-N monomethyltransferase activity" evidence=IEA

GO:0035242 "protein-arginine omega-N asymmetric methyltransferase activity" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0044020 "histone methyltransferase activity (H4-R3 specific)" evidence=IDA

GO:0043985 "histone H4-R3 methylation" evidence=IDA

GO:0008170 "N-methyltransferase activity" evidence=IMP;IDA

GO:0018216 "peptidyl-arginine methylation" evidence=IDA

GO:0031175 "neuron projection development" evidence=IMP

GO:0045653 "negative regulation of megakaryocyte differentiation" evidence=IDA

GO:0042054 "histone methyltransferase activity" evidence=IDA

GO:0016571 "histone methylation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006479 "protein methylation" evidence=TAS

GO:0007166 "cell surface receptor signaling pathway" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0008168 "methyltransferase activity" evidence=TAS

RGD|62020 Prmt1 "protein arginine methyltransferase 1" [Rattus norvegicus (taxid:10116)]

 Score = 723 (259.6 bits), Expect = 1.7e-141, Sum P(2) = 1.7e-141
 Identities = 121/181 (66%), Positives = 161/181 (88%)

Query:   212 VLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSS 271
             ++FPD+A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT++
Sbjct:   172 LIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNA 231

Query:   272 CLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHY 331
             CL+KE+D+YT+   DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ Y
Sbjct:   232 CLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPY 291

Query:   332 THWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQ 391
             THWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DY+
Sbjct:   292 THWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYR 351

Query:   392 V 392
             +
Sbjct:   352 M 352

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006479 "protein methylation" evidence=ISO;IDA

GO:0008170 "N-methyltransferase activity" evidence=ISO

GO:0008276 "protein methyltransferase activity" evidence=ISO;IDA

GO:0008469 "histone-arginine N-methyltransferase activity" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=TAS

GO:0016274 "protein-arginine N-methyltransferase activity" evidence=ISO

GO:0016275 "[cytochrome c

GO:0016571 "histone methylation" evidence=ISO

GO:0018216 "peptidyl-arginine methylation" evidence=ISO;IDA

GO:0019919 "peptidyl-arginine methylation, to asymmetrical-dimethyl arginine" evidence=IDA

GO:0030519 "snoRNP binding" evidence=IDA

GO:0031175 "neuron projection development" evidence=IEA;ISO

GO:0035241 "protein-arginine omega-N monomethyltransferase activity" evidence=IDA

GO:0035242 "protein-arginine omega-N asymmetric methyltransferase activity" evidence=IDA

GO:0035247 "peptidyl-arginine omega-N-methylation" evidence=IDA

GO:0042054 "histone methyltransferase activity" evidence=ISO

GO:0043234 "protein complex" evidence=IDA

GO:0043985 "histone H4-R3 methylation" evidence=ISO;ISS

GO:0044020 "histone methyltransferase activity (H4-R3 specific)" evidence=ISO;ISS

GO:0045653 "negative regulation of megakaryocyte differentiation" evidence=ISO;ISS

MGI|MGI:107846 Prmt1 "protein arginine N-methyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 723 (259.6 bits), Expect = 2.1e-141, Sum P(2) = 2.1e-141
 Identities = 121/181 (66%), Positives = 161/181 (88%)

Query:   212 VLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSS 271
             ++FPD+A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT++
Sbjct:   190 LIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNA 249

Query:   272 CLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHY 331
             CL+KE+D+YT+   DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ Y
Sbjct:   250 CLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPY 309

Query:   332 THWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQ 391
             THWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DY+
Sbjct:   310 THWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYR 369

Query:   392 V 392
             +
Sbjct:   370 M 370

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006479 "protein methylation" evidence=ISO;IMP

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008170 "N-methyltransferase activity" evidence=ISO

GO:0008276 "protein methyltransferase activity" evidence=ISO;IMP

GO:0008469 "histone-arginine N-methyltransferase activity" evidence=ISO

GO:0016274 "protein-arginine N-methyltransferase activity" evidence=IDA

GO:0016275 "[cytochrome c

GO:0016571 "histone methylation" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018216 "peptidyl-arginine methylation" evidence=ISO

GO:0019919 "peptidyl-arginine methylation, to asymmetrical-dimethyl arginine" evidence=ISO

GO:0030519 "snoRNP binding" evidence=ISO

GO:0031175 "neuron projection development" evidence=ISO

GO:0032259 "methylation" evidence=IEA

GO:0035241 "protein-arginine omega-N monomethyltransferase activity" evidence=ISO

GO:0035242 "protein-arginine omega-N asymmetric methyltransferase activity" evidence=ISO

GO:0035247 "peptidyl-arginine omega-N-methylation" evidence=ISO

GO:0042054 "histone methyltransferase activity" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043985 "histone H4-R3 methylation" evidence=ISO

GO:0044020 "histone methyltransferase activity (H4-R3 specific)" evidence=ISO

GO:0045653 "negative regulation of megakaryocyte differentiation" evidence=ISO

RGD|2320935 LOC100361025 "protein arginine methyltransferase 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 723 (259.6 bits), Expect = 2.1e-141, Sum P(2) = 2.1e-141
 Identities = 121/181 (66%), Positives = 161/181 (88%)

Query:   212 VLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSS 271
             ++FPD+A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT++
Sbjct:   162 LIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNA 221

Query:   272 CLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHY 331
             CL+KE+D+YT+   DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ Y
Sbjct:   222 CLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPY 281

Query:   332 THWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQ 391
             THWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DY+
Sbjct:   282 THWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYR 341

Query:   392 V 392
             +
Sbjct:   342 M 342

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0044020 "histone methyltransferase activity (H4-R3 specific)" evidence=IEA

GO:0045653 "negative regulation of megakaryocyte differentiation" evidence=IEA

UNIPROTKB|Q8AV13 prmt1-a "Protein arginine N-methyltransferase 1-A" [Xenopus laevis (taxid:8355)]

 Score = 719 (258.2 bits), Expect = 1.2e-140, Sum P(2) = 1.2e-140
 Identities = 121/181 (66%), Positives = 160/181 (88%)

Query:   212 VLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSS 271
             ++FPD+A+L+I  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+V+++
Sbjct:   188 LIFPDRATLYITAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVSNA 247

Query:   272 CLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHY 331
             CL+KE+D+YT+   DLSFTSPF LQV+RNDY+ ALV +F++EF++CHKR GFST+PE+ Y
Sbjct:   248 CLIKEVDIYTVKVDDLSFTSPFCLQVKRNDYIHALVAYFNIEFTRCHKRTGFSTSPESPY 307

Query:   332 THWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQ 391
             THWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT +++FKG+LCE+S S DY+
Sbjct:   308 THWKQTVFYMEDYLTVKTGEEIFGTIGMKPNAKNNRDLDFTFDIDFKGQLCELSCSTDYR 367

Query:   392 V 392
             +
Sbjct:   368 M 368

GO:0003713 "transcription coactivator activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006479 "protein methylation" evidence=IDA

GO:0007552 "metamorphosis" evidence=IMP

GO:0008170 "N-methyltransferase activity" evidence=IDA

GO:0016571 "histone methylation" evidence=IMP

GO:0031056 "regulation of histone modification" evidence=IMP

GO:0042054 "histone methyltransferase activity" evidence=ISS

GO:0043234 "protein complex" evidence=IPI

GO:0043985 "histone H4-R3 methylation" evidence=ISS

GO:0044020 "histone methyltransferase activity (H4-R3 specific)" evidence=ISS

GO:0045653 "negative regulation of megakaryocyte differentiation" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

UNIPROTKB|E2R6B6 PRMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 723 (259.6 bits), Expect = 1.5e-140, Sum P(2) = 1.5e-140
 Identities = 121/181 (66%), Positives = 161/181 (88%)

Query:   212 VLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSS 271
             ++FPD+A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT++
Sbjct:   193 LIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNA 252

Query:   272 CLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHY 331
             CL+KE+D+YT+   DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ Y
Sbjct:   253 CLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPY 312

Query:   332 THWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQ 391
             THWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DY+
Sbjct:   313 THWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYR 372

Query:   392 V 392
             +
Sbjct:   373 M 373

GO:0045653 "negative regulation of megakaryocyte differentiation" evidence=IEA

GO:0044020 "histone methyltransferase activity (H4-R3 specific)" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54EF2	ANM1_DICDI	2, ., 1, ., 1, ., 1, 2, 5	0.5056	0.6242	0.9501	yes	N/A
Q9URX7	ANM1_SCHPO	2, ., 1, ., 1, ., -	0.5161	0.5953	0.9088	yes	N/A
Q9JIF0	ANM1_MOUSE	2, ., 1, ., 1, ., 1, 2, 5	0.6584	0.6377	0.8921	yes	N/A
Q9SU94	ANM11_ARATH	2, ., 1, ., 1, ., 1, 2, 5	0.5326	0.6473	0.8615	yes	N/A
Q99873	ANM1_HUMAN	2, ., 1, ., 1, ., 1, 2, 5	0.6611	0.6377	0.9168	yes	N/A
Q63009	ANM1_RAT	2, ., 1, ., 1, ., 1, 2, 5	0.6584	0.6377	0.9376	yes	N/A
Q28F07	ANM1_XENTR	2, ., 1, ., 1, ., 1, 2, 5	0.6592	0.6281	0.9287	yes	N/A
Q0J2C6	ANM1_ORYSJ	2, ., 1, ., 1, ., -	0.5350	0.6262	0.8397	yes	N/A
P38074	HMT1_YEAST	2, ., 1, ., 1, ., -	0.4732	0.6146	0.9166	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
4th Layer	2.1.1.8	LOW CONFIDENCE prediction!
4th Layer	2.1.1.125	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	519
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-13
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	9e-12
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	9e-11
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	6e-10
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	3e-09
COG2230	283	COG2230, Cfa, Cyclopropane fatty acid synthase and	1e-08
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	1e-08
pfam06325	294	pfam06325, PrmA, Ribosomal protein L11 methyltrans	3e-08
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	2e-07
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	2e-07
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	5e-07
TIGR00406	288	TIGR00406, prmA, ribosomal protein L11 methyltrans	7e-07
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	8e-07
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	2e-06
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	5e-06
TIGR01983	224	TIGR01983, UbiG, ubiquinone biosynthesis O-methylt	5e-06
pfam02353	273	pfam02353, CMAS, Mycolic acid cyclopropane synthet	9e-06
COG4076	252	COG4076, COG4076, Predicted RNA methylase [General	1e-05
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	1e-05
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	2e-05
PRK14896	258	PRK14896, ksgA, 16S ribosomal RNA methyltransferas	3e-05
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	5e-05
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	8e-05
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	1e-04
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	1e-04
PRK05134	233	PRK05134, PRK05134, bifunctional 3-demethylubiquin	1e-04
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	2e-04
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	3e-04
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	3e-04
COG4976	287	COG4976, COG4976, Predicted methyltransferase (con	3e-04
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	4e-04
COG1092	393	COG1092, COG1092, Predicted SAM-dependent methyltr	5e-04
pfam08003	315	pfam08003, Methyltransf_9, Protein of unknown func	7e-04
TIGR04290	226	TIGR04290, meth_Rta_06860, methyltransferase, Rta_	7e-04
PRK11873	272	PRK11873, arsM, arsenite S-adenosylmethyltransfera	9e-04
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	0.001
pfam10294	170	pfam10294, Methyltransf_16, Putative methyltransfe	0.001
COG2520	341	COG2520, COG2520, Predicted methyltransferase [Gen	0.002
COG2265	432	COG2265, TrmA, SAM-dependent methyltransferases re	0.002
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	0.002
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	0.002
COG0742	187	COG0742, COG0742, N6-adenine-specific methylase [D	0.002
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	0.003
PRK14967	223	PRK14967, PRK14967, putative methyltransferase; Pr	0.003
pfam02475	199	pfam02475, Met_10, Met-10+ like-protein	0.004

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 5/104 (4%)

Query: 82  VLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
           VLD+GCGTG L++  A    ARV G++ S   +E A++      L+D V +LKG  EE+ 
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAA-ALLADNVEVLKGDAEEL- 59

Query: 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
            P   +  D+IIS         E +   +  AR   L   G+L 
Sbjct: 60  PPEADESFDVIIS-DPPLHHLVEDLARFLEEARRL-LKPGGVLV 101

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score = 64.8 bits (159), Expect = 9e-12
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 11/80 (13%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTIL 132
           K +  GK VLD+GCG+GIL++ AAK GA +V+ ++     VE A+E  + N +   V + 
Sbjct: 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLP 174

Query: 133 KGKVEEVELPFGIQKVDIII 152
           +G            K D+I+
Sbjct: 175 QGD----------LKADVIV 184

Length = 250

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score = 62.7 bits (153), Expect = 9e-11
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 8/82 (9%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVVTIL 132
           K L KGK VLD+GCG+GIL++ AAK GA +V+G++     VE A+E    N +  +V   
Sbjct: 158 KLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAK 217

Query: 133 KGKVEEV--ELPFGIQKVDIII 152
              + EV    PF     D+I+
Sbjct: 218 GFLLLEVPENGPF-----DVIV 234

Length = 300

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 57.4 bits (139), Expect = 6e-10
 Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 76  LFKGKIVLDIGCGTGILS-MFAAKSGA-ARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
           L  G  VLD+GCGTG L+ + A K G  A V+GI+ S   +E AKE   K    + V  +
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGY-ENVEFI 59

Query: 133 KGKVEEVE-LPFGIQKVDIIIS 153
           +G +EE+  L       D++IS
Sbjct: 60  QGDIEELPQLQLEDNSFDVVIS 81

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 11/109 (10%)

Query: 78  KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK 135
            G  VLDIGCGTG L++  A+    ARV G++ S  ++E A+E   K  L   +T ++G 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENA-KLALGPRITFVQGD 59

Query: 136 VEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
               +    ++  D +     G       +LD +       L   G L 
Sbjct: 60  AP--DALDLLEGFDAVFI--GGGGGDLLELLDALA----SLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 15/115 (13%)

Query: 75  HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILK 133
            L  G  +LDIGCG G L+++AA+     V+G+  S   + YA++ +    L D V +  
Sbjct: 69  GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRL 128

Query: 134 GKVEEVELPFGIQKVDIIIS----EWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
               + E PF     D I+S    E +G    Y+     V       L   G + 
Sbjct: 129 QDYRDFEEPF-----DRIVSVGMFEHVGK-ENYDDFFKKV----YALLKPGGRML 173

Length = 283

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 75  HLFKGKIVLDIGCGTGILSMFAA-KSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTIL 132
            + K   +LD+G G G L +  A ++  A+++G+E      E A+  V  N L + + ++
Sbjct: 41  PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100

Query: 133 KGKVEEVELPFGIQKVDIIIS 153
           +  ++E          D+II 
Sbjct: 101 EADIKEFLKALVFASFDLIIC 121

Length = 248

>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)

 Score = 54.9 bits (133), Expect = 3e-08
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 11/78 (14%)

Query: 78  KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSD--VVTILKG 134
            G+ VLD+GCG+GIL++ A K GA +V+G++   + V  AKE  + N +     V +   
Sbjct: 160 PGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVYLPGD 219

Query: 135 KVEEVELPFGIQKVDIII 152
             E         K D+++
Sbjct: 220 LPEG--------KADVVV 229

This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 10/79 (12%)

Query: 78  KGKIVLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNL------SDVVT 130
           +GK VLD+G GTGIL++ AA  GA+RV+ ++     +E A+   ++         +D V+
Sbjct: 45  EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVAD-VS 103

Query: 131 ILKGKVEEVEL--PFGIQK 147
             +GK + V +  PFG Q+
Sbjct: 104 DFRGKFDTVIMNPPFGSQR 122

Length = 198

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 79  GKIVLDIGCGTGILSMFAAKSGA-ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV 136
           G  VLD G G+G   + AA++G  ARV+G+E        A+  +    L+  V ++ G  
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60

Query: 137 EEV-ELPFGIQKVDIIIS 153
            E+ ELP G    D+++ 
Sbjct: 61  RELLELPDG--SFDLVLG 76

This family contains methyltransferase domains. Length = 117

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 82  VLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
           +LD+GCGTG +    A++G + V G++ S   +E AKE +        V  +       +
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK--VRFVVADAR--D 56

Query: 141 LPFGIQKVDIIISEWMGYCLF 161
           LPF     D++I   +     
Sbjct: 57  LPFEEGSFDLVICAGLSLDYL 77

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 7/77 (9%)

Query: 78  KGKIVLDIGCGTGILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVV-TILKGK 135
           K K V+D+GCG+GILS+ A K GAA+V+GI+     VE A++  + N +SD +   L   
Sbjct: 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL 218

Query: 136 VEEVELPFGIQKVDIII 152
            + +E        D+I+
Sbjct: 219 EQPIEGKA-----DVIV 230

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 10/75 (13%)

Query: 83  LDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTILKGKVEEVEL 141
           LD+GCGTG+L+   A+ G ARV G++    ++  A++             + G  E  +L
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP-------RKFVVGDAE--DL 51

Query: 142 PFGIQKVDIIISEWM 156
           PF  +  D+++S  +
Sbjct: 52  PFPDESFDVVVSSLV 66

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 78  KGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK 135
             K +LD+G G+G +++  AK G  A VI ++ S + +  A+E  ++N L  V+ +    
Sbjct: 110 LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDL 169

Query: 136 VEEVELPFGIQKVDIIIS 153
            E +   F     D+I+S
Sbjct: 170 FEPLRGKF-----DLIVS 182

Length = 280

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 20/99 (20%)

Query: 78  KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVE 137
           KG  VL++G G+GI+++ AAK+G  +V+G++   I  YA E    N   + +     +V 
Sbjct: 23  KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVD---INPYAVECAKCNAKLNNIRNNGVEVI 78

Query: 138 EVEL--PFGIQKVDIII--------------SEWMGYCL 160
             +L  PF   K D+I+               +W+ Y L
Sbjct: 79  RSDLFEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNYAL 117

Length = 188

>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 73  NKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDV 128
           NK    G  VLD+GCG G+LS   A+ GA  V GI+ S   +E AK    K+ L  +
Sbjct: 40  NKKPLFGLRVLDVGCGGGLLSEPLARLGAN-VTGIDASEENIEVAKLHAKKDPLLKI 95

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224

>gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 75  HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILK 133
            L  G  +LDIGCG G L   AA+     V+G+  S N  ++A++ V    L   V +L 
Sbjct: 59  GLKPGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKHARQRVAAEGLQRKVEVLL 118

Query: 134 GKVEEVELPFGIQKVDIIIS 153
               + +     +  D I+S
Sbjct: 119 QDYRDFD-----EPFDRIVS 133

This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273

>gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function prediction only]

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 21/119 (17%)

Query: 53  HEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-N 111
           H ++L+D  R   + +++             D+G G+GILS+ AA + A RVI IE    
Sbjct: 11  HLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPK 65

Query: 112 IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVL 170
               A+E +      +        V      +  +  D++I E          MLDT L
Sbjct: 66  RARLAEENLHVPGDVNWEV-----VVGDARDYDFENADVVICE----------MLDTAL 109

Length = 252

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 18/113 (15%)

Query: 50  FGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIE 108
           FG+H            +R ++     +  G  VLD+ CGTG +++  AKS G   V+G++
Sbjct: 33  FGLH----------RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLD 82

Query: 109 -CSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCL 160
              +++E A+E + K  + +V  ++ G  E   LPF     D +    + + L
Sbjct: 83  ISESMLEVAREKLKKKGVQNVEFVV-GDAE--NLPFPDNSFDAVT---ISFGL 129

Length = 238

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 14/78 (17%)

Query: 82  VLDIGCGTG-----ILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGK 135
           VLD+G G+G     +          ARV  ++ S   +  A++   +  L + V  L+  
Sbjct: 91  VLDLGTGSGAIALALAKERP----DARVTAVDISPEALAVARKNAARLGLDN-VEFLQSD 145

Query: 136 VEEVELPFGIQKVDIIIS 153
             E   P    K D+I+S
Sbjct: 146 WFE---PLPGGKFDLIVS 160

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 76  LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVVTILKG 134
              G  VL+IG G G L+   AK  A +V  IE    + E+ ++          V I++G
Sbjct: 27  DTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIAAGN---VEIIEG 82

Query: 135 KVEEVELP 142
              +V+LP
Sbjct: 83  DALKVDLP 90

Length = 258

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 44.8 bits (107), Expect = 5e-05
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 78  KGKIVLDIGCGTGILS-MFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGK 135
           +   VLD+G G+G ++   A +   A V  ++ S   +  A+        +  V  L+G 
Sbjct: 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGAR-VEFLQGD 166

Query: 136 VEEVELPFGIQKVDIIIS 153
             E   P    + D+I+S
Sbjct: 167 WFE---PLPGGRFDLIVS 181

Length = 275

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 73  NKHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECSNIVEY-AKEIVDKNNLSDVVT 130
            K +F    VLDIGCGTG L+    K    A  I  + S  +   AK  + +N     V 
Sbjct: 29  EKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSEN-----VQ 83

Query: 131 ILKGKVEEVELPFGIQKVDIIIS 153
            + G  E  +LP      D+I+S
Sbjct: 84  FICGDAE--KLPLEDSSFDLIVS 104

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 75  HLFKGKIVLDIGCGTGILSM-FAAKSGAA-RVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
            +  G  VLD+GCG G  +   A + G   RV+GI+ S  ++  AKE       +  V  
Sbjct: 16  AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPN--VEF 73

Query: 132 LKGKVEEVELPFGIQKVDIIISE 154
           ++G  +   LPF     D + S+
Sbjct: 74  VRGDAD--GLPFPDGSFDAVRSD 94

Length = 241

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 56  MLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAA--KSGAARVIGIECS-NI 112
           M K+E+R +           L KG ++LDIGCGTG +++ A+       +V  ++     
Sbjct: 23  MTKEEIRALALSKL-----RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKA 77

Query: 113 VEYAKEIVDKNNLSDVVTILKGKVEEV 139
           +   +   +K  + + + ++KG+  E+
Sbjct: 78  INLTRRNAEKFGVLNNIVLIKGEAPEI 104

Length = 198

>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 21/76 (27%)

Query: 77  FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS--NI-------------VEY----AK 117
             GK VLD+GCG GILS   A+ GA  V GI+ S  NI             ++Y    A+
Sbjct: 47  LFGKRVLDVGCGGGILSESMARLGAD-VTGIDASEENIEVARLHALESGLKIDYRQTTAE 105

Query: 118 EIVDKNNLS-DVVTIL 132
           E+  ++    DVVT +
Sbjct: 106 ELAAEHPGQFDVVTCM 121

Length = 233

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 42.8 bits (102), Expect = 2e-04
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 76  LFKGKIVLDIGCGTGILSMFAAKSG--AARVIGIE-CSNIVEYAKEIVDKNNLSDVVTIL 132
           +  G  VLD+ CGTG L++  AK+      V+G++    ++   +E +    LS  V  +
Sbjct: 49  VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFV 108

Query: 133 KGKVEEVELPFGIQKVDIIISEWMGYCL 160
           +G  E   LPF     D +    + + L
Sbjct: 109 QGDAE--ALPFPDNSFDAVT---IAFGL 131

Length = 239

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
           K   KGK VLD GCGTG+LS+  AK G A V  ++ S  +V+ A+      +++  V   
Sbjct: 51  KDPLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFE 109

Query: 133 KGKVEEVE 140
              +  + 
Sbjct: 110 VNDLLSLC 117

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 78  KGKIVLDIGCGTGILSMFAAKSG-AARVIGIE-CSNIVEYAKEIVDKNNLSDVVTILKGK 135
            G  + DIG GTG +++  A +G + RVI IE     +E  +    +  + ++  +++G 
Sbjct: 34  PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLE-VVEGD 92

Query: 136 VEEVELPFGIQKVDII 151
             E  LP  +   D I
Sbjct: 93  APEA-LP-DLPSPDAI 106

Length = 187

>gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only]

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 23/135 (17%)

Query: 80  KIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVE--YAKEIVDKNNLSDVVTILKGKV 136
           + +LD+GCGTG L+  A +  A R+ G++ S N++   + K + D   +++ V  L+   
Sbjct: 127 RRMLDLGCGTG-LTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLT 185

Query: 137 EEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIE 196
           +E        + D+I++      L Y   L+ +       LA  G        LF   +E
Sbjct: 186 QE--------RFDLIVA---ADVLPYLGALEGLFAGAAGLLAPGG--------LFAFSVE 226

Query: 197 DLQGGQDHVVGQCVR 211
            L      V+G   R
Sbjct: 227 TLPDDGGFVLGPSQR 241

Length = 287

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 77  FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK 135
             G  VLD+GCG GILS   A+ G A V GI+ S   +E AK    ++ ++  +   +  
Sbjct: 58  LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVN--IDYRQAT 114

Query: 136 VEEVELPFGIQKVDIIIS 153
           VE++       + D++  
Sbjct: 115 VEDLA--SAGGQFDVVTC 130

Length = 243

>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 78  KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSD 127
            GK VL++   TG  S+ AA  GA+ V  ++ S   +E+A+E  + N L  
Sbjct: 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDG 267

Length = 393

>gnl|CDD|149213 pfam08003, Methyltransf_9, Protein of unknown function (DUF1698)

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 22/111 (19%)

Query: 74  KHL--FKGKIVLDIGCGTG--ILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVV 129
            HL   KG+ +LD+GCG G  +  M     GAA V+GI+ S +     E V K       
Sbjct: 109 PHLSPLKGRTILDVGCGNGYHMWRMLGE--GAALVVGIDPSELFLCQFEAVRK------- 159

Query: 130 TILKGKVEEVELPFGIQKV------DIIISEWMGYCLFYESMLDTVLYARD 174
            +L        LP GI+++      D + S  MG      S LD +L  +D
Sbjct: 160 -LLGNDQRAHLLPLGIEQLPALEAFDTVFS--MGVLYHRRSPLDHLLQLKD 207

This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins. Length = 315

>gnl|CDD|213903 TIGR04290, meth_Rta_06860, methyltransferase, Rta_06860 family

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 79  GKIVLDIGCGTGILSMFAAKSGAARVIGIEC 109
           G  VLDIGC  G  S+   + GA RV+GI+ 
Sbjct: 50  GWSVLDIGCNAGFYSIEMKRRGAGRVLGIDS 80

Members of this family are methyltransferases that mark a widely distributed large conserved gene neighborhood of unknown function. It appears most common in soil and rhizosphere bacteria. Length = 226

>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed

 Score = 41.1 bits (97), Expect = 9e-04
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 10/83 (12%)

Query: 76  LFKGKIVLDIGCGTGILSMFAAK----SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVT 130
           L  G+ VLD+G G G     AA+    +G  +VIG++ +  ++  A+    K   ++ V 
Sbjct: 75  LKPGETVLDLGSGGGFDCFLAARRVGPTG--KVIGVDMTPEMLAKARANARKAGYTN-VE 131

Query: 131 ILKGKVEEVELPFGIQKVDIIIS 153
              G++E + +      VD+IIS
Sbjct: 132 FRLGEIEALPVADNS--VDVIIS 152

Length = 272

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVE------YAKEIVDKNNLSD 127
             L  G  VLDIGCGTGIL     + G   V G++ S           A +        D
Sbjct: 18  PRLKPGGRVLDIGCGTGILLRLLRERG-FDVTGVDPSPAAVLIFSLFDAPDPAVLAGKYD 76

Query: 128 VVT 130
           ++T
Sbjct: 77  LIT 79

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 74  KHLFKGKIVLDIGCGTGILS-MFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSD--VVT 130
            +   G  VL++G GTG++    A     A V   +    +E  K+ ++ N LS      
Sbjct: 40  GNNLSGLNVLELGSGTGLVGIAVALLLPGASVTITDLEEAIELMKKNIELNGLSSKVTAK 99

Query: 131 ILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESML 166
           +L    +  +  F    VD+I+      C++ E   
Sbjct: 100 VLDWGEDLPDDVFDPHPVDLIL---AADCVYNEDSF 132

Length = 170

>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only]

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 31/94 (32%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 79  GKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI--VEYAKEIVDKNNLSDVVTILKGKV 136
           G+ VLD+  G G  S+  AK G  +V  I+  N   VEY KE +  N +   V  + G  
Sbjct: 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDI-NPDAVEYLKENIRLNKVEGRVEPILGDA 247

Query: 137 EEVELPFGIQKVDIIISEWMGYCLFYESMLDTVL 170
            EV    G    D II   MG        L   L
Sbjct: 248 REVAPELG--VADRII---MGLPKSAHEFLPLAL 276

Length = 341

>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 76  LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG 134
           L  G+ VLD+ CG G   +  AK    +V G+E S   VE A+E    N + + V  + G
Sbjct: 291 LAGGERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAG 348

Query: 135 KVEEV 139
             EE 
Sbjct: 349 DAEEF 353

Length = 432

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 39.9 bits (90), Expect = 0.002
 Identities = 34/231 (14%), Positives = 71/231 (30%), Gaps = 19/231 (8%)

Query: 29  DENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCG 88
                       + Y            + ++ +  +     +   + L  G  VLDIGCG
Sbjct: 2   SLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLL---RLLPGGLGVLDIGCG 58

Query: 89  TGILSMFAAKSGA-ARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEEVELPF-GI 145
           TG L++ A   G  A V+G++ S   +  A+   +   L  V  ++        LPF   
Sbjct: 59  TGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVV-ADALGGVLPFEDS 117

Query: 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHV 205
              D++IS      + +       L    + L   G          +       G  +  
Sbjct: 118 ASFDLVISL----LVLHLLPPAKALRELLRVLKPGG--------RLVLSDLLRDGLLEGR 165

Query: 206 VGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKE 256
           +   +    P      I    +   + + +   + +       +++  +  
Sbjct: 166 LAALLGFGDPVLERGDILLELEALLRLELLDLEELLGLLGELELERGGLAR 216

Length = 257

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 76  LFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIEC-SNIVEYAKEIVDKNNLSDVVTIL 132
           +  G  VL+ G G+G L+ + A++      V   E   +  + A+E + +  L D VT+ 
Sbjct: 92  ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLK 151

Query: 133 KGKVEEVELPFGIQKVDIII 152
            G V E       + VD + 
Sbjct: 152 LGDVREGIDE---EDVDAVF 168

Length = 256

>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 77  FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK 135
            +G  VLD+  G+G L + A   GAARV+ +E     V+  KE +    L     +L+  
Sbjct: 42  IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRND 101

Query: 136 VEE 138
              
Sbjct: 102 ALR 104

Length = 187

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 7/103 (6%)

Query: 83  LDIGCGTG-ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
           LDIGCGTG +L             G++ S   +E A E +    L      ++  V +  
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGL-LDAVRVRLDVLDAI 59

Query: 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLL 183
                   D+++       L + +    VL    + L   G+L
Sbjct: 60  DLDP-GSFDVVV---ASNVLHHLADPRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 75  HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKE 118
            L  G+ VLD+  G+G L++ AA +GA  V  ++     V  A+ 
Sbjct: 33  GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARL 77

Length = 223

>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 8/94 (8%)

Query: 79  GKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV 136
           G++V+D+  G G  S+  AK   A RV  +E +   V+Y KE +  N +  V++ + G V
Sbjct: 101 GEVVVDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDV 160

Query: 137 EEVELPFGIQKVDIIISEWMGYCLFYESMLDTVL 170
            +V L       D +I   M         LD  L
Sbjct: 161 RDVILE---GVADRVI---MNLPKSAHEFLDKAL 188

The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. Length = 199

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	519
KOG1499|consensus	346		100.0
KOG1500|consensus	517		100.0
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	100.0
KOG1499|consensus	346		99.96
KOG0822|consensus	649		99.86
KOG1501|consensus	636		99.82
PTZ00357	1072	methyltransferase; Provisional	99.75
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.68
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.68
KOG1500|consensus	517		99.66
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.66
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.63
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.61
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.59
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.56
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.54
PRK11207	197	tellurite resistance protein TehB; Provisional	99.54
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.54
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.53
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.53
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.53
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.52
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.52
KOG1270|consensus	282		99.51
PLN02244	340	tocopherol O-methyltransferase	99.51
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.48
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.47
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.47
KOG1540|consensus	296		99.47
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.47
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.46
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.44
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.44
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.43
PRK12335	287	tellurite resistance protein TehB; Provisional	99.43
COG4123	248	Predicted O-methyltransferase [General function pr	99.42
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.4
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.4
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.39
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.39
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.39
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.39
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.38
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.37
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.37
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.36
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.36
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.36
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.35
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.35
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.34
PLN02336	475	phosphoethanolamine N-methyltransferase	99.34
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.33
PRK06922	677	hypothetical protein; Provisional	99.32
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.32
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.32
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.31
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.31
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.31
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.31
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.3
PLN02490	340	MPBQ/MSBQ methyltransferase	99.29
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.29
PRK08317	241	hypothetical protein; Provisional	99.29
PRK14967	223	putative methyltransferase; Provisional	99.29
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.28
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.27
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.27
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.27
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.26
KOG4300|consensus	252		99.25
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.25
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.25
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.24
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.23
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.23
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.23
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.23
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.23
COG4076	252	Predicted RNA methylase [General function predicti	99.23
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.22
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.21
KOG1271|consensus	227		99.21
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.21
PRK05785	226	hypothetical protein; Provisional	99.21
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.21
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.2
PRK07402	196	precorrin-6B methylase; Provisional	99.2
PLN03075	296	nicotianamine synthase; Provisional	99.2
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.2
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.2
PRK04266	226	fibrillarin; Provisional	99.2
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.2
PRK14968	188	putative methyltransferase; Provisional	99.19
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.19
COG2890	280	HemK Methylase of polypeptide chain release factor	99.19
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.18
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.18
PLN02336	475	phosphoethanolamine N-methyltransferase	99.18
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.17
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.16
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.16
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.16
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.14
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.14
PRK06202	232	hypothetical protein; Provisional	99.13
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.13
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.12
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.11
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.11
PHA03412	241	putative methyltransferase; Provisional	99.11
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.11
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.1
PRK04457	262	spermidine synthase; Provisional	99.1
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.1
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.09
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.08
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.08
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.08
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.08
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.08
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.07
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.06
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.06
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.05
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.05
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.04
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.04
TIGR03438	301	probable methyltransferase. This model represents	99.04
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.03
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.02
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.02
PHA03411	279	putative methyltransferase; Provisional	99.02
PRK00811	283	spermidine synthase; Provisional	99.01
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.01
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.01
KOG2904|consensus	328		99.01
PLN02476	278	O-methyltransferase	98.99
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.97
PTZ00146	293	fibrillarin; Provisional	98.96
TIGR00438	188	rrmJ cell division protein FtsJ.	98.96
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.95
COG4122	219	Predicted O-methyltransferase [General function pr	98.95
PLN02672	1082	methionine S-methyltransferase	98.94
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.94
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.94
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.93
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.93
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.93
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.91
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.9
KOG1541|consensus	270		98.87
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.87
PLN02366	308	spermidine synthase	98.84
PRK01581	374	speE spermidine synthase; Validated	98.81
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.81
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.81
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.79
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.79
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.79
KOG2899|consensus	288		98.79
KOG1975|consensus	389		98.78
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.76
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.76
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.74
PRK03612	521	spermidine synthase; Provisional	98.73
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.7
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.7
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.67
KOG3010|consensus	261		98.65
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.65
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.62
COG2521	287	Predicted archaeal methyltransferase [General func	98.61
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.6
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.59
KOG2361|consensus	264		98.57
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.55
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.53
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.51
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.5
KOG3191|consensus	209		98.5
PLN02823	336	spermine synthase	98.48
KOG0820|consensus	315		98.47
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.46
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.46
KOG1663|consensus	237		98.45
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.43
COG2520	341	Predicted methyltransferase [General function pred	98.39
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.38
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.38
KOG3420|consensus	185		98.38
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.37
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.37
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.37
PRK04148	134	hypothetical protein; Provisional	98.36
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.36
COG3897	218	Predicted methyltransferase [General function pred	98.33
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.32
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.32
KOG2940|consensus	325		98.31
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.29
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.28
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.28
KOG1661|consensus	237		98.28
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.26
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.24
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.22
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.19
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.18
KOG2915|consensus	314		98.17
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.14
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.11
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.09
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.06
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.05
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.02
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.0
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.95
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.95
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.94
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.92
KOG2187|consensus	534		97.91
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.9
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.89
PRK00536	262	speE spermidine synthase; Provisional	97.87
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.85
KOG1501|consensus	636		97.83
KOG2730|consensus	263		97.81
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.77
PF13679	141	Methyltransf_32: Methyltransferase domain	97.74
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.72
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.72
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.71
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.7
KOG3045|consensus	325		97.69
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.68
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.6
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.59
KOG1269|consensus	364		97.57
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.56
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.53
PRK10742	250	putative methyltransferase; Provisional	97.53
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.52
KOG1709|consensus	271		97.49
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.43
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.4
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.34
PHA01634	156	hypothetical protein	97.33
KOG3178|consensus	342		97.33
KOG1331|consensus	293		97.28
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.19
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.17
KOG3201|consensus	201		97.11
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.06
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.05
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.03
KOG4589|consensus	232		96.87
KOG4058|consensus	199		96.79
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.74
KOG2352|consensus	482		96.69
KOG0822|consensus	649		96.62
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.62
KOG1227|consensus	351		96.54
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.54
KOG3987|consensus	288		96.52
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.5
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.47
KOG2798|consensus	369		96.43
COG4798	238	Predicted methyltransferase [General function pred	96.35
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.31
KOG1122|consensus	460		96.29
KOG2920|consensus	282		96.09
KOG3115|consensus	249		96.08
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.0
KOG2793|consensus	248		95.52
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.52
KOG1596|consensus	317		95.46
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	95.4
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.34
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.23
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	94.85
KOG0024|consensus	354		94.79
KOG2671|consensus	421		94.53
KOG1099|consensus	294		94.5
KOG1253|consensus	525		94.3
COG0286	489	HsdM Type I restriction-modification system methyl	94.25
PTZ00357	1072	methyltransferase; Provisional	93.97
KOG1562|consensus	337		93.8
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	93.5
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	93.24
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	92.98
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	92.81
KOG2198|consensus	375		92.64
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	92.56
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	92.5
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	92.44
PRK11524	284	putative methyltransferase; Provisional	92.38
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	91.85
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	91.72
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	91.59
COG3129	292	Predicted SAM-dependent methyltransferase [General	91.45
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	91.29
PRK13699	227	putative methylase; Provisional	91.24
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	90.02
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	89.83
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	89.48
KOG3924|consensus	419		89.3
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	89.17
PLN02668	386	indole-3-acetate carboxyl methyltransferase	88.81
KOG2651|consensus	476		88.36
COG2933	358	Predicted SAM-dependent methyltransferase [General	88.09
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	87.32
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	87.19
COG1568	354	Predicted methyltransferases [General function pre	87.1
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	87.03
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	86.34
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	86.08
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	85.96
PF03269	177	DUF268: Caenorhabditis protein of unknown function	85.72
KOG2078|consensus	495		85.61
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	85.46
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	85.41
PRK13699	227	putative methylase; Provisional	85.31
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	85.19
PRK11524	284	putative methyltransferase; Provisional	85.15
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	84.9
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	84.74
KOG2912|consensus	419		83.81
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	82.83
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	82.64
KOG1201|consensus	300		82.26
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	82.15
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	82.12
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	81.3
PLN02827	378	Alcohol dehydrogenase-like	81.29
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	81.01
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	80.48
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	80.45
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	80.43
PLN02740	381	Alcohol dehydrogenase-like	80.23
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	80.13

>KOG1499|consensus

Probab=100.00  E-value=3.5e-72  Score=548.49  Aligned_cols=328  Identities=66%  Similarity=1.185  Sum_probs=317.0

Q ss_pred             cccCCCcchhhhccccccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHH
Q psy14674         34 CEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIV  113 (519)
Q Consensus        34 ~~~~~~~~~yf~~y~~~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~  113 (519)
                      ++.+.+.++||++|+++++|++||+|.+|+.+|+.+++++..++++++|||||||||++++++|++|+++|+|||.|+++
T Consensus        16 ~~d~~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia   95 (346)
T KOG1499|consen   16 PKDMTSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA   95 (346)
T ss_pred             ccccchhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH
Confidence            56667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccc
Q psy14674        114 EYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFIC  193 (519)
Q Consensus       114 ~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~  193 (519)
                      +.|++.+..|++.+.|+++++.++++.+|.  +++|+|+|||||+++.+|.++++++.++.++|+|||.++|+.++    
T Consensus        96 ~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~--eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~----  169 (346)
T KOG1499|consen   96 DFARKIVKDNGLEDVITVIKGKVEDIELPV--EKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRAT----  169 (346)
T ss_pred             HHHHHHHHhcCccceEEEeecceEEEecCc--cceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccce----
Confidence            999999999999999999999999999995  89999999999999999999999999999999999999999999    


Q ss_pred             ccccccCCCcccccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhhhhhhcCCcccccCCCCcccCCce
Q psy14674        194 GIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCL  273 (519)
Q Consensus       194 ~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~~~v~~~~~~~~ls~~~~  273 (519)
                                                ++++++++..+...++.||.++|||||+++++.+..+|+++.++|.+++++||.
T Consensus       170 --------------------------l~l~~i~d~~~~~~~i~fW~~Vygfdms~~~~~~~~e~lv~vv~~~~l~t~~~~  223 (346)
T KOG1499|consen  170 --------------------------LYLAAIEDDSYKDDKIGFWDDVYGFDMSCIKKIAIKEPLVDVVDPEQLLTEPCL  223 (346)
T ss_pred             --------------------------EEEEeccCchhhhhhcCccccccccchhhhhhhhhcccceeccChhHhccccee
Confidence                                      999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCceeeeeEEEEEEecceeeEEEEEEEEEEcCCC--CceEEecCCCCCCCCeeeEEEeeCceeeecCCC
Q psy14674        274 LKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCH--KRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGE  351 (519)
Q Consensus       274 ~~~~dl~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~--~~v~lsT~P~~~~thW~q~v~~l~~p~~v~~g~  351 (519)
                      ++++|+.+++.+++.|+++|++.+.++|.+|||++|||+.|+.++  .++.|||||.+|+|||||+||+|++|+.|++||
T Consensus       224 i~~~Dl~t~~i~d~~F~s~f~l~v~r~~~i~g~v~yFDv~F~~~~~~~~~~fST~P~~p~THWKQtVfyl~~p~~v~~ge  303 (346)
T KOG1499|consen  224 IKEFDLYTVKIEDLSFTSPFKLKVTRNGYLHAFVAYFDVEFTGCHGKKRLGFSTSPSSPYTHWKQTVFYLENPLTVKEGE  303 (346)
T ss_pred             eEEeeeeeeeccceeeccceEEEEccCceEEEEEEEEEEeeccCCCCCcceeecCCCCCCceeeeEEEEecCccceecCc
Confidence            999999999999999999999999999999999999999999887  789999999999999999999999999999999


Q ss_pred             EEEEEEEEEeCCCCCcceEEEEEEEecCc-eeeeccceeEEec
Q psy14674        352 EVVGSFGMQPNPRNNRDLDFTVEVNFKGE-LCEMSESNDYQVD  393 (519)
Q Consensus       352 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  393 (519)
                      .|.|++++++|++|+|+|+++|.+.++|+ .+....++.|.|+
T Consensus       304 ~i~g~it~~~~~~~~R~l~~~l~~~~~~~~~~~~~~~~~y~~~  346 (346)
T KOG1499|consen  304 DITGTITMKPNKKNNRDLDISLSLNFKGQGLCSFSESDSYPMR  346 (346)
T ss_pred             eEEEEEEEeeCCCCCccceEEEEEecCCccccccccccccccC
Confidence            99999999999999999999999999999 6666667777764

>KOG1500|consensus

Probab=100.00  E-value=5.7e-53  Score=403.93  Aligned_cols=322  Identities=35%  Similarity=0.629  Sum_probs=290.0

Q ss_pred             ccCCCcchhhhccccccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHH
Q psy14674         35 EDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVE  114 (519)
Q Consensus        35 ~~~~~~~~yf~~y~~~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~  114 (519)
                      .+..+...||..|+.+..+..|+.|.+|+..|.++|+++...+.++.|||+|||+|++++++|++|+++|||||.|+|++
T Consensus       134 tEesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAq  213 (517)
T KOG1500|consen  134 TEESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQ  213 (517)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHH
Confidence            34456678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccc
Q psy14674        115 YAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICG  194 (519)
Q Consensus       115 ~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~  194 (519)
                      +|++.++.|++.+||+++.|.++++++|   +++|+|||++||+.+.+|.++++.+.++ ++|||.|.++|....     
T Consensus       214 yA~~Lv~~N~~~~rItVI~GKiEdieLP---Ek~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gd-----  284 (517)
T KOG1500|consen  214 YARKLVASNNLADRITVIPGKIEDIELP---EKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGD-----  284 (517)
T ss_pred             HHHHHHhcCCccceEEEccCccccccCc---hhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccc-----
Confidence            9999999999999999999999999999   8999999999999999999999999988 999999999999999     


Q ss_pred             cccccCCCcccccceeEEecCCCcceeeecccCccccc---cceeeee--cccccChhhhhhhh----hcCCcccccCCC
Q psy14674        195 IEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKE---DKITWWD--NVYGFDMSCIKKIA----IKEPLVDVVDPK  265 (519)
Q Consensus       195 i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~w~--~~~G~d~~~~~~~~----~~~~~v~~~~~~  265 (519)
                                               ++++|+.++.+..   .+..||-  ++||.|++++...+    +..|+|+.+|++
T Consensus       285 -------------------------iHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~R  339 (517)
T KOG1500|consen  285 -------------------------IHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIR  339 (517)
T ss_pred             -------------------------eeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccc
Confidence                                     7777777766544   3456784  68999999987655    466999999998


Q ss_pred             CcccCCceEEEEecCCCCCCCc-eeeeeEEEEEEecceeeEEEEEEEEEEcCCCCceEEecCCCCCCCCeeeEEEeeCce
Q psy14674        266 QVVTSSCLLKEIDLYTITKADL-SFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEH  344 (519)
Q Consensus       266 ~~ls~~~~~~~~dl~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~~~v~lsT~P~~~~thW~q~v~~l~~p  344 (519)
                      -++..+. .+.+||...+++++ .+..|++|.+...|.+||+++|||+.|+++.-.+.+||+|.+|.|||.|..++|..|
T Consensus       340 ilmA~sv-~h~~dF~~~kEedlh~i~iPlkF~~~~~g~iHGLAfWFDV~F~GS~~~~wlsTap~apltHwyqvrCll~~P  418 (517)
T KOG1500|consen  340 ILMAKSV-FHVIDFLNMKEEDLHEIDIPLKFHALQCGRIHGLAFWFDVLFDGSTVQVWLSTAPTAPLTHWYQVRCLLSQP  418 (517)
T ss_pred             eeeccch-HhhhhhhhcccchheeecccceehhhhhcceeeeeeEEEEEeccceEEEccCCCCCCCcccceeeeeeccCc
Confidence            8877644 57789999999998 688999999999999999999999999988888899999999999999999999999


Q ss_pred             eeecCCCEEEEEEEEEeCCCCCcceEEEEEEEecCceeeeccceeEEeccc
Q psy14674        345 LTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQVDDR  395 (519)
Q Consensus       345 ~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (519)
                      +.|++|++|+|++.+..++++++++++++++.-.+    .++++.+++++|
T Consensus       419 i~v~aGq~ltGr~~LiA~~~QSY~i~i~l~~~~~l----~sSs~~lDLK~P  465 (517)
T KOG1500|consen  419 IFVKAGQTLTGRLLLIANSRQSYDITITLSAKMTL----QSSSNKLDLKNP  465 (517)
T ss_pred             hhhhcCCeeeeeEEEEEccccceeEEEEEEeeeee----ecccceeccCCc
Confidence            99999999999999999999999888888776443    345566666665

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=100.00  E-value=3.3e-39  Score=337.33  Aligned_cols=263  Identities=29%  Similarity=0.459  Sum_probs=207.8

Q ss_pred             ccHHhhhcHHHHHHHHHHHHhcCC----C----CCCCEEEEECCcccHHHHHHHHcC-----CCEEEEEechH-HHHHHH
Q psy14674         52 IHEEMLKDEVRTMTYRNSMYHNKH----L----FKGKIVLDIGCGTGILSMFAAKSG-----AARVIGIECSN-IVEYAK  117 (519)
Q Consensus        52 ~~~~~l~d~~r~~~y~~ai~~~~~----~----~~~~~VLDiGcGtG~ls~~la~~g-----~~~V~gvD~s~-~~~~A~  117 (519)
                      .++.+-+|..+...|.+||.....    .    .+++.|||||||+|.|++++++++     +.+|+|||.++ +....+
T Consensus       152 tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~  231 (448)
T PF05185_consen  152 TYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ  231 (448)
T ss_dssp             HHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH
T ss_pred             cHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH
Confidence            456677899999999999865321    1    136799999999999999998885     67999999995 555556


Q ss_pred             HHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccccccc
Q psy14674        118 EIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIED  197 (519)
Q Consensus       118 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~  197 (519)
                      ++++.|++.++|+++++|++++.+|   +++|+||||+||.++.+|- ...++.++.|+|||||++||+.++        
T Consensus       232 ~~v~~n~w~~~V~vi~~d~r~v~lp---ekvDIIVSElLGsfg~nEl-~pE~Lda~~rfLkp~Gi~IP~~~t--------  299 (448)
T PF05185_consen  232 KRVNANGWGDKVTVIHGDMREVELP---EKVDIIVSELLGSFGDNEL-SPECLDAADRFLKPDGIMIPSSYT--------  299 (448)
T ss_dssp             HHHHHTTTTTTEEEEES-TTTSCHS---S-EEEEEE---BTTBTTTS-HHHHHHHGGGGEEEEEEEESSEEE--------
T ss_pred             HHHHhcCCCCeEEEEeCcccCCCCC---CceeEEEEeccCCcccccc-CHHHHHHHHhhcCCCCEEeCcchh--------
Confidence            7778999999999999999999998   7999999999999998884 456789999999999999999999        


Q ss_pred             ccCCCcccccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhhhhhhcCCcccccCCCCcccCC-ceEEE
Q psy14674        198 LQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSS-CLLKE  276 (519)
Q Consensus       198 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~~~v~~~~~~~~ls~~-~~~~~  276 (519)
                                            .|++|+++..++.+...+|.           ...+..|++..+.+...++.+ ..+++
T Consensus       300 ----------------------~ylaPiss~~l~~~~~~~~~-----------~~~~e~pyvv~~~~~~~Ls~~~~~~~~  346 (448)
T PF05185_consen  300 ----------------------SYLAPISSPKLYQEVRNWWN-----------PSSFETPYVVHLSPFELLSDPPQPVFT  346 (448)
T ss_dssp             ----------------------EEEEEEE-HHHHHHHHHHHG-----------HHHHTSSEEE--GGGGBCSCCEEEEEE
T ss_pred             ----------------------hEEEEeeCHHHHHHHHhhcc-----------hhhcCCcEEEEccchhhhcCCceEEEE
Confidence                                  77788887766544332222           344566888778888888888 88899


Q ss_pred             EecCCCC---CCCceeeeeEEEEEEecceeeEEEEEEEEEEcCCCCceEEecCCCC----CCCCeeeEEEeeCceeeecC
Q psy14674        277 IDLYTIT---KADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA----HYTHWKQTVFYLNEHLTVKK  349 (519)
Q Consensus       277 ~dl~~~~---~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~~~v~lsT~P~~----~~thW~q~v~~l~~p~~v~~  349 (519)
                      |++.+..   ..+..+...++|++.++|.+|||++||++.|+   ++|.|||+|..    +.|||+|++|||++|+.|++
T Consensus       347 F~hp~~~~~~~~~~~r~~~~~F~i~~~g~vhGfagwFd~~Ly---~~V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~  423 (448)
T PF05185_consen  347 FDHPNPDLPENSDNSRSSELEFKIKRDGVVHGFAGWFDAVLY---GDVVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKA  423 (448)
T ss_dssp             TTTCGGG-GGGGGSEEEEEEEEEBSSSEEEEEEEEEEEEEEE---CSEEEESSTTS---TT--TTEEEEEEEEEEEEE-T
T ss_pred             eccCCccccchhhhheeeeEEEeeCCCcEEEEEEEEEEEEee---CCeeeecCCCcCCCCCCCeEeEEEEEecCcEEECC
Confidence            9888766   35667888999999999999999999999999   55999999987    78999999999999999999


Q ss_pred             CCEEEEEEEEEeC
Q psy14674        350 GEEVVGSFGMQPN  362 (519)
Q Consensus       350 g~~i~~~~~~~~~  362 (519)
                      ||+|++++..+.+
T Consensus       424 g~~I~~~i~R~~~  436 (448)
T PF05185_consen  424 GDEISVHIWRKTD  436 (448)
T ss_dssp             T-EEEEEEEEECC
T ss_pred             CCEEEEEEEEEcC
Confidence            9999999888865

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG1499|consensus

Probab=99.96  E-value=4.7e-29  Score=245.03  Aligned_cols=123  Identities=51%  Similarity=0.955  Sum_probs=113.6

Q ss_pred             hcccccccccceeccc-eeeeeceEEEEeecceeeEEEEEEEEEEcCCC--ceeEEecCCCCCCCCceeEEEeecccccc
Q psy14674        397 AALGLRDRDCMYTKLY-TIVHAPFTLQVRRNDYVQALVTFFSVEFSKCH--KRIGFSTAPEAHYTHWKQTVFYLNEHLTV  473 (519)
Q Consensus       397 ~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~~--~~v~lsT~P~~~~THWkQt~~~l~~~~~v  473 (519)
                      -++.++.+||.|...+ ++|+++|++++++++.+|||++||||.|++++  ++++|||||.+|+||||||||||++|+.|
T Consensus       220 ~~~~i~~~Dl~t~~i~d~~F~s~f~l~v~r~~~i~g~v~yFDv~F~~~~~~~~~~fST~P~~p~THWKQtVfyl~~p~~v  299 (346)
T KOG1499|consen  220 EPCLIKEFDLYTVKIEDLSFTSPFKLKVTRNGYLHAFVAYFDVEFTGCHGKKRLGFSTSPSSPYTHWKQTVFYLENPLTV  299 (346)
T ss_pred             cceeeEEeeeeeeeccceeeccceEEEEccCceEEEEEEEEEEeeccCCCCCcceeecCCCCCCceeeeEEEEecCccce
Confidence            3568899999997666 67999999999999999999999999999988  89999999999999999999999999999


Q ss_pred             cCCCEEEEEEEEEeCCCCCceeEEEEEEEEcCc-eeeeeeeeeEeeC
Q psy14674        474 KKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGE-LCEMSESNDYRMR  519 (519)
Q Consensus       474 ~~g~~i~g~~~~~~~~~~~r~l~i~~~~~~~~~-~~~~~~~~~~~~~  519 (519)
                      ++||.|.|+|+|++|++|+|+|+++|+|+++++ ..+...++.|+||
T Consensus       300 ~~ge~i~g~it~~~~~~~~R~l~~~l~~~~~~~~~~~~~~~~~y~~~  346 (346)
T KOG1499|consen  300 KEGEDITGTITMKPNKKNNRDLDISLSLNFKGQGLCSFSESDSYPMR  346 (346)
T ss_pred             ecCceEEEEEEEeeCCCCCccceEEEEEecCCccccccccccccccC
Confidence            999999999999999999999999999999998 4545556778886

>KOG0822|consensus

Probab=99.86  E-value=1.8e-21  Score=197.89  Aligned_cols=261  Identities=19%  Similarity=0.280  Sum_probs=196.5

Q ss_pred             cHHhhhcHHHHHHHHHHHHhcCCCC-------CCCEEEEECCcccHHHHHHHHc-----CCCEEEEEechH-HHHHHHHH
Q psy14674         53 HEEMLKDEVRTMTYRNSMYHNKHLF-------KGKIVLDIGCGTGILSMFAAKS-----GAARVIGIECSN-IVEYAKEI  119 (519)
Q Consensus        53 ~~~~l~d~~r~~~y~~ai~~~~~~~-------~~~~VLDiGcGtG~ls~~la~~-----g~~~V~gvD~s~-~~~~A~~~  119 (519)
                      ++..-+|.+....|.+||+......       .-.+|+-+|+|.|-+.....++     -.-++|+||.++ ++-..+. 
T Consensus       335 YetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-  413 (649)
T KOG0822|consen  335 YETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-  413 (649)
T ss_pred             hhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-
Confidence            4455567778888888887543211       1347889999999775543332     133799999994 4433332 


Q ss_pred             HHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccccccccc
Q psy14674        120 VDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQ  199 (519)
Q Consensus       120 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~~  199 (519)
                      ..-..+.++|+++.+|+..+..|.  ++.|++|||.+|.+..+|-. +.+|+.+.++|||+|+.||...+          
T Consensus       414 ~n~~~W~~~Vtii~~DMR~w~ap~--eq~DI~VSELLGSFGDNELS-PECLDG~q~fLkpdgIsIP~sYt----------  480 (649)
T KOG0822|consen  414 RNFECWDNRVTIISSDMRKWNAPR--EQADIIVSELLGSFGDNELS-PECLDGAQKFLKPDGISIPSSYT----------  480 (649)
T ss_pred             hchhhhcCeeEEEeccccccCCch--hhccchHHHhhccccCccCC-HHHHHHHHhhcCCCceEccchhh----------
Confidence            445567889999999999998665  89999999999998888754 55688888999999999999999          


Q ss_pred             CCCcccccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhh-hhhhcCCcccccCCCCcccCCceEEEEe
Q psy14674        200 GGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIK-KIAIKEPLVDVVDPKQVVTSSCLLKEID  278 (519)
Q Consensus       200 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~-~~~~~~~~v~~~~~~~~ls~~~~~~~~d  278 (519)
                                          .|++|+....++.+       +     ++.+ ..++..++|..+.+...|+++..+++|.
T Consensus       481 --------------------Syi~PImS~~l~q~-------v-----~a~~~~~~fe~~YVV~l~~~~~La~~q~vftF~  528 (649)
T KOG0822|consen  481 --------------------SYIAPIMSPKLYQE-------V-----KATNDPNAFEAPYVVLLHNYCILAEPQPVFTFE  528 (649)
T ss_pred             --------------------hhhcccccHHHHHH-------H-----HhcCCccccccceEEEecceeecCCCCceeEEe
Confidence                                77777776655432       1     1111 1345557888888888888889888887


Q ss_pred             cCCCC-CCCceeeeeEEEEEEecceeeEEEEEEEEEEcCCCCceEEecCCCCC---CCCeeeEEEeeCceeeecCCCEEE
Q psy14674        279 LYTIT-KADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAH---YTHWKQTVFYLNEHLTVKKGEEVV  354 (519)
Q Consensus       279 l~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~~~v~lsT~P~~~---~thW~q~v~~l~~p~~v~~g~~i~  354 (519)
                      ..... .-+-......+|++.++|.+|||++|||..|+   ++|.||+.|...   ..+|.+.+|++++|+.|.+|++|+
T Consensus       529 HPN~~~nv~N~R~~s~eF~~~~~~~lHGFaGYFd~~LY---kdI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~ls  605 (649)
T KOG0822|consen  529 HPNFDFNVDNSRSKSVEFKVKSNGVLHGFAGYFDAVLY---KDIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLS  605 (649)
T ss_pred             cCCcccccccccceeEEEecCCCceEeecchhhhhhhh---heeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEE
Confidence            65442 12223456788999999999999999999999   789999999632   467999999999999999999999


Q ss_pred             EEEEEEeC
Q psy14674        355 GSFGMQPN  362 (519)
Q Consensus       355 ~~~~~~~~  362 (519)
                      +.|...-+
T Consensus       606 v~~wR~~d  613 (649)
T KOG0822|consen  606 VHFWRCVD  613 (649)
T ss_pred             EEEEEEeC
Confidence            99976643

>KOG1501|consensus

Probab=99.82  E-value=7.5e-20  Score=181.90  Aligned_cols=270  Identities=21%  Similarity=0.246  Sum_probs=188.5

Q ss_pred             ccHHhhhcHHHHHHHHHHHHhcCCCC-----CC-CEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCC
Q psy14674         52 IHEEMLKDEVRTMTYRNSMYHNKHLF-----KG-KIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNN  124 (519)
Q Consensus        52 ~~~~~l~d~~r~~~y~~ai~~~~~~~-----~~-~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~  124 (519)
                      -+.+|++|..|+.+|+..|.....-.     .| .-|||||+|||.++++++++|+..|+|+|.- +|.+.|++...+||
T Consensus        34 sy~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng  113 (636)
T KOG1501|consen   34 SYLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNG  113 (636)
T ss_pred             hHHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCC
Confidence            35689999999999998886432211     22 2699999999999999999999999999999 89999999999999


Q ss_pred             CCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccccccccCCCcc
Q psy14674        125 LSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDH  204 (519)
Q Consensus       125 ~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~~~~~~~  204 (519)
                      ++++|+++.....++..... .+.|+++.+.+..-+..|+.++++-.+..+++++|...+|.++++|+.++|+.....  
T Consensus       114 ~SdkI~vInkrStev~vg~~-~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~--  190 (636)
T KOG1501|consen  114 MSDKINVINKRSTEVKVGGS-SRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCN--  190 (636)
T ss_pred             CccceeeeccccceeeecCc-chhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhh--
Confidence            99999999999998865421 569999999988888899999999999999999999999999999999998743210  


Q ss_pred             cccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhhhhhhcCCcccccC-CCCcccCCceEEEEecCCCC
Q psy14674        205 VVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVD-PKQVVTSSCLLKEIDLYTIT  283 (519)
Q Consensus       205 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~~~v~~~~-~~~~ls~~~~~~~~dl~~~~  283 (519)
                          +.. ++|-    ......+-.+.+.   -..++.|..--.      ..-+++..+ .-.+|+++..++.+||..-.
T Consensus       191 ----~nd-l~~~----~~~ts~gv~~~p~---~lesc~G~~sv~------d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~  252 (636)
T KOG1501|consen  191 ----LND-LRNN----EAKTSDGVRLVPP---GLESCFGIKSVQ------DSQLVDAIEKEFKLLSSEGTIFYSDFPRWI  252 (636)
T ss_pred             ----hhc-cccc----cccccCCcccCCC---ccccCCCchhHH------HHHHhhcchhhheeecCcceeEEeecchhh
Confidence                000 0000    0000000000000   012333321100      011112222 22578999999999998433


Q ss_pred             CCCceeeeeEEEEEEecceeeEEEEEEEEEEcCCCCceEEecCCCCC---------CCCeeeEEEeeCc
Q psy14674        284 KADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAH---------YTHWKQTVFYLNE  343 (519)
Q Consensus       284 ~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~~~v~lsT~P~~~---------~thW~q~v~~l~~  343 (519)
                      ......+..+......+|++.+...|||++++. ...+-+.-+|...         ..||.|+++++++
T Consensus       253 ~s~s~~~~~r~~va~~Sg~~~~~l~wwdi~mD~-~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~  320 (636)
T KOG1501|consen  253 DSNSEIEELRPPVAVHSGPLRSNLLWWDISMDQ-FGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPKE  320 (636)
T ss_pred             hcchhhhhhcCcccccccchhheeeeeeeeecc-CcceEEEecceecCCChHHHHHHHHHHHhcCCChh
Confidence            222222223445566799999999999999984 3445556666532         3679999999984

>PTZ00357 methyltransferase; Provisional

Probab=99.75  E-value=6.8e-17  Score=168.62  Aligned_cols=254  Identities=15%  Similarity=0.200  Sum_probs=161.9

Q ss_pred             EEEEECCcccHHHHHHHHc----C-CCEEEEEech-HHHHHHHHHH-HHCCC-------CCcEEEEEceeeEeecCC---
Q psy14674         81 IVLDIGCGTGILSMFAAKS----G-AARVIGIECS-NIVEYAKEIV-DKNNL-------SDVVTILKGKVEEVELPF---  143 (519)
Q Consensus        81 ~VLDiGcGtG~ls~~la~~----g-~~~V~gvD~s-~~~~~A~~~~-~~~~~-------~~~i~~~~~d~~~~~~~~---  143 (519)
                      +|+-+|+|.|-|...+.++    | ..+|+|||.+ +.+...+.+. ....+       .++|+++..|+.++..+.   
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            6899999999765433332    3 2379999999 6443433332 23344       456999999999985431   


Q ss_pred             ------CCceeeEEEEeccccccccchhHHHHHHHHhcccCc----Ce-------EEEccCCcccccccccccCCCcccc
Q psy14674        144 ------GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLAT----NG-------LLFPDKASLFICGIEDLQGGQDHVV  206 (519)
Q Consensus       144 ------~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~Lkp----gG-------~lip~~~~~~~~~i~~~~~~~~~~~  206 (519)
                            ..+++|+||||.+|.+..+|-. +.+|+.+.+.||+    +|       +.||...+-|+.||.+         
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELS-PECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISS---------  852 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELS-PECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMS---------  852 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCC-HHHHHHHHHhhhhhccccccccCCcceecchhhhhhcccccc---------
Confidence                  1248999999999999888854 4567777788875    55       4889999955555543         


Q ss_pred             cceeEEecCCCcceeeecccCccccccceeeeecccccChh---h--hhhhhhcCCcccccCCCCcccCCceEEEEecCC
Q psy14674        207 GQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMS---C--IKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYT  281 (519)
Q Consensus       207 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~---~--~~~~~~~~~~v~~~~~~~~ls~~~~~~~~dl~~  281 (519)
                                           ..++..-...  ...|+...   +  ........++|..+.....|+.|...++|...+
T Consensus       853 ---------------------pKLya~V~~~--~~~gltvP~p~c~~~haa~fet~YVV~L~s~~~La~PQPcFTFeHPn  909 (1072)
T PTZ00357        853 ---------------------ATFDAAVTEA--AVKGLTVPPPGCHDHHAALNHTLLVTNLSRAVTLAPPQPCWTFEHRF  909 (1072)
T ss_pred             ---------------------HHHHHHHHHh--hhcccccCCccccccchhhcccceEEEecceeecCCCcceeEEECCC
Confidence                                 3332110000  00010000   0  000112235565555555667778888887754


Q ss_pred             CCCC-----------------CceeeeeEEEEEEecceeeEEEEEEEEEEcCCC--CceEEecCCCCC---CCCeeeEEE
Q psy14674        282 ITKA-----------------DLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCH--KRIGFSTAPEAH---YTHWKQTVF  339 (519)
Q Consensus       282 ~~~~-----------------~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~--~~v~lsT~P~~~---~thW~q~v~  339 (519)
                      ....                 +......+.|++..++.+|||++||++.|+++.  ..+.|||.|...   .-+|.+.+|
T Consensus       910 ~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vlHGFAGYFdAvLYkDVt~~~V~LSI~P~ThTpgMfSWFPIFF  989 (1072)
T PTZ00357        910 HGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFSAVLYQSATAPATIIATAPVERTEDMYSWFPCVF  989 (1072)
T ss_pred             cccccccccccccccccccccccceeEEEEEecCCCcceeeeeeEEEEEeecCCCccceEeecCCCCCCCCccceeeeEE
Confidence            4311                 123466788999999999999999999999521  127899999742   345999999


Q ss_pred             eeC---ceeeecCCC---------EEEEEEEEEeCCCCCc
Q psy14674        340 YLN---EHLTVKKGE---------EVVGSFGMQPNPRNNR  367 (519)
Q Consensus       340 ~l~---~p~~v~~g~---------~i~~~~~~~~~~~~~~  367 (519)
                      ||+   ++..++.|+         .|++.++...+-...|
T Consensus       990 PLeP~~~~e~~~~gq~~~~~~~~~~i~~~l~Rr~~~~e~r 1029 (1072)
T PTZ00357        990 ALEPAQQAELQDVGQAAAEESRMVAIRVQLDRRTSLAEQR 1029 (1072)
T ss_pred             ecCccccceEeeccccccccccceeEEEeeeeccccccce
Confidence            997   666677776         5555555554444444

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.68  E-value=1.9e-16  Score=151.72  Aligned_cols=115  Identities=27%  Similarity=0.459  Sum_probs=98.7

Q ss_pred             HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec
Q psy14674         64 MTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL  141 (519)
Q Consensus        64 ~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~  141 (519)
                      ..+++++.......+|.+|||||||||.+++.+++. |..+|+|+|+| .|++.|+++....+..+ ++++++|++++++
T Consensus        37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf  115 (238)
T COG2226          37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF  115 (238)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC
Confidence            344455555555568999999999999999999987 66799999999 69999999999988887 9999999999998


Q ss_pred             CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ++  ++||+|.+...   +.+-.+.+.+|+++.|+|||||+++
T Consensus       116 ~D--~sFD~vt~~fg---lrnv~d~~~aL~E~~RVlKpgG~~~  153 (238)
T COG2226         116 PD--NSFDAVTISFG---LRNVTDIDKALKEMYRVLKPGGRLL  153 (238)
T ss_pred             CC--CccCEEEeeeh---hhcCCCHHHHHHHHHHhhcCCeEEE
Confidence            87  99999976554   6666778999999999999999776

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.68  E-value=2.2e-16  Score=135.03  Aligned_cols=107  Identities=31%  Similarity=0.440  Sum_probs=88.5

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee-eEeecCCCCceeeEEEEe
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV-EEVELPFGIQKVDIIISE  154 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~~~D~Ivs~  154 (519)
                      |+.+|||||||+|.++..+++. +..+|+|+|+| +|++.|++++...+..++++++++|+ ......   ++||+|++.
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~D~v~~~   77 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL---EPFDLVICS   77 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS---SCEEEEEEC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC---CCCCEEEEC
Confidence            5789999999999999999993 55599999999 69999999998888889999999999 332333   689999998


Q ss_pred             c-cccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        155 W-MGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       155 ~-~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      . ..+.+........+++.+.+.|+|||+++.+.
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            8 33333333567788999999999999998764

...

>KOG1500|consensus

Probab=99.66  E-value=1.6e-16  Score=153.64  Aligned_cols=106  Identities=23%  Similarity=0.341  Sum_probs=91.6

Q ss_pred             ccccccccceeccceeeeeceEEEEeecceeeEEEEEEEEEEcCCCceeEEecCCCCCCCCceeEEEeecccccccCCCE
Q psy14674        399 LGLRDRDCMYTKLYTIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEE  478 (519)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~~~~v~lsT~P~~~~THWkQt~~~l~~~~~v~~g~~  478 (519)
                      +++++.++.-.++. .+..|+++.+...|.+||+++||||.|.++...+.|||+|.+|.|||.|..++|..||-|.+|+.
T Consensus       348 h~~dF~~~kEedlh-~i~iPlkF~~~~~g~iHGLAfWFDV~F~GS~~~~wlsTap~apltHwyqvrCll~~Pi~v~aGq~  426 (517)
T KOG1500|consen  348 HVIDFLNMKEEDLH-EIDIPLKFHALQCGRIHGLAFWFDVLFDGSTVQVWLSTAPTAPLTHWYQVRCLLSQPIFVKAGQT  426 (517)
T ss_pred             hhhhhhhcccchhe-eecccceehhhhhcceeeeeeEEEEEeccceEEEccCCCCCCCcccceeeeeeccCchhhhcCCe
Confidence            34555555444443 58899999999999999999999999999888999999999999999999999999999999999


Q ss_pred             EEEEEEEEeCCCCCceeEEEEEEEEcC
Q psy14674        479 VVGSFGMQPNPRNNRDLDFTVEVNFKG  505 (519)
Q Consensus       479 i~g~~~~~~~~~~~r~l~i~~~~~~~~  505 (519)
                      |+|++.+..|+..+++++|+++.....
T Consensus       427 ltGr~~LiA~~~QSY~i~i~l~~~~~l  453 (517)
T KOG1500|consen  427 LTGRLLLIANSRQSYDITITLSAKMTL  453 (517)
T ss_pred             eeeeEEEEEccccceeEEEEEEeeeee
Confidence            999999999998888777777665443

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.66  E-value=2.6e-16  Score=153.30  Aligned_cols=169  Identities=19%  Similarity=0.188  Sum_probs=126.1

Q ss_pred             HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         68 NSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        68 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      +.++....+.+|++|||||||.|.+++++|+.-..+|+|+++| ++.+.++++++..|+.++|+++..|..++.     +
T Consensus        62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~-----e  136 (283)
T COG2230          62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE-----E  136 (283)
T ss_pred             HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-----c
Confidence            4666778999999999999999999999999833499999999 799999999999999989999999998753     5


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccccccccCCCcccccceeEEecCCCcce----ee
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASL----FI  222 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~----~~  222 (519)
                      +||-|||-.+..++..+ ..+.++..+.++|+|||.++....+-.-.     . . .....++.+++||++.-.    ..
T Consensus       137 ~fDrIvSvgmfEhvg~~-~~~~ff~~~~~~L~~~G~~llh~I~~~~~-----~-~-~~~~~~i~~yiFPgG~lPs~~~i~  208 (283)
T COG2230         137 PFDRIVSVGMFEHVGKE-NYDDFFKKVYALLKPGGRMLLHSITGPDQ-----E-F-RRFPDFIDKYIFPGGELPSISEIL  208 (283)
T ss_pred             ccceeeehhhHHHhCcc-cHHHHHHHHHhhcCCCceEEEEEecCCCc-----c-c-ccchHHHHHhCCCCCcCCCHHHHH
Confidence            69999998887776654 47888999999999999999777661110     0 0 044567788999997632    11


Q ss_pred             ecccCccccccceeeeecccccChhhh
Q psy14674        223 CGIEDRQYKEDKITWWDNVYGFDMSCI  249 (519)
Q Consensus       223 ~~~~~~~~~~~~~~~w~~~~G~d~~~~  249 (519)
                      ...++.++....+......|-..+..+
T Consensus       209 ~~~~~~~~~v~~~~~~~~hYa~Tl~~W  235 (283)
T COG2230         209 ELASEAGFVVLDVESLRPHYARTLRLW  235 (283)
T ss_pred             HHHHhcCcEEehHhhhcHHHHHHHHHH
Confidence            223444444444444444444444443

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.63  E-value=9e-16  Score=148.39  Aligned_cols=109  Identities=24%  Similarity=0.397  Sum_probs=79.2

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      +.......+|.+|||+|||||.++..+++. + ..+|+|+|+| +|++.|+++.+..+.. +|+++++|++++++++  +
T Consensus        39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d--~  115 (233)
T PF01209_consen   39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPD--N  115 (233)
T ss_dssp             HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-T--T
T ss_pred             HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCC--C
Confidence            333345678899999999999999988876 3 4599999999 6999999999988876 6999999999998887  9


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +||+|++...   +.+-.+....+.++.|+|||||.++
T Consensus       116 sfD~v~~~fg---lrn~~d~~~~l~E~~RVLkPGG~l~  150 (233)
T PF01209_consen  116 SFDAVTCSFG---LRNFPDRERALREMYRVLKPGGRLV  150 (233)
T ss_dssp             -EEEEEEES----GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred             ceeEEEHHhh---HHhhCCHHHHHHHHHHHcCCCeEEE
Confidence            9999988665   3333457788999999999999887

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.61  E-value=6e-16  Score=152.91  Aligned_cols=173  Identities=23%  Similarity=0.268  Sum_probs=112.0

Q ss_pred             HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674         68 NSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI  145 (519)
Q Consensus        68 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  145 (519)
                      +.+.+...+.+|.+|||||||.|.+++.+|+. |+ +|+||.+| +..+.|+++++..|+.+++++..+|..++  +   
T Consensus        52 ~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~--~---  125 (273)
T PF02353_consen   52 DLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL--P---  125 (273)
T ss_dssp             HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------
T ss_pred             HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc--C---
Confidence            35567788999999999999999999999998 76 99999999 69999999999999999999999998764  3   


Q ss_pred             ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccccccccCCCcccccceeEEecCCCcce----e
Q psy14674        146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASL----F  221 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~----~  221 (519)
                      .+||.|+|-.+..++.. ..++.+++.+.++|||||.++.+..+..-..-..   .......++.+++||++.-.    +
T Consensus       126 ~~fD~IvSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~---~~~~~~~~i~kyiFPgg~lps~~~~  201 (273)
T PF02353_consen  126 GKFDRIVSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHA---ERRSSSDFIRKYIFPGGYLPSLSEI  201 (273)
T ss_dssp             -S-SEEEEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHH---CTTCCCHHHHHHTSTTS---BHHHH
T ss_pred             CCCCEEEEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEEecccccccchh---hcCCCceEEEEeeCCCCCCCCHHHH
Confidence            58999999877666543 4678889999999999999997765521111100   00001245677889986522    2


Q ss_pred             eecccCccccccceeeeecccccChhhhh
Q psy14674        222 ICGIEDRQYKEDKITWWDNVYGFDMSCIK  250 (519)
Q Consensus       222 ~~~~~~~~~~~~~~~~w~~~~G~d~~~~~  250 (519)
                      +...+..++....+.-+...|...+..+.
T Consensus       202 ~~~~~~~~l~v~~~~~~~~hY~~Tl~~W~  230 (273)
T PF02353_consen  202 LRAAEDAGLEVEDVENLGRHYARTLRAWR  230 (273)
T ss_dssp             HHHHHHTT-EEEEEEE-HHHHHHHHHHHH
T ss_pred             HHHHhcCCEEEEEEEEcCcCHHHHHHHHH
Confidence            22233344443333333444555554443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.59  E-value=2e-15  Score=142.16  Aligned_cols=105  Identities=29%  Similarity=0.381  Sum_probs=91.5

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .+|++|||||||-|.++..+|+.|+ +|+|+|++ ++++.|+.....+++.  +.+.+..++++....  ++||+|+|.-
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~--~~FDvV~cmE  132 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAG--GQFDVVTCME  132 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcC--CCccEEEEhh
Confidence            6899999999999999999999996 99999999 6999999999999876  778888888875443  7999999977


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |..|.   .+.+.++.++.+++||||.++.++..
T Consensus       133 VlEHv---~dp~~~~~~c~~lvkP~G~lf~STin  163 (243)
T COG2227         133 VLEHV---PDPESFLRACAKLVKPGGILFLSTIN  163 (243)
T ss_pred             HHHcc---CCHHHHHHHHHHHcCCCcEEEEeccc
Confidence            74444   55677899999999999999988876

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.56  E-value=1.9e-14  Score=145.17  Aligned_cols=107  Identities=23%  Similarity=0.287  Sum_probs=89.9

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||||||+|.++..+++.|+ +|+|||++ +|++.|+++....+...+++++++++++++.+.  ++||+|++..
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~--~~FD~Vi~~~  206 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG--RKFDAVLSLE  206 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc--CCCCEEEEhh
Confidence            4678999999999999999998876 99999999 699999988777666567999999998876554  7899999977


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.+++   .....++.++.++|||||.++.....
T Consensus       207 vLeHv---~d~~~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        207 VIEHV---ANPAEFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             HHHhc---CCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            65544   34678899999999999999977544

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.54  E-value=5.1e-14  Score=139.01  Aligned_cols=117  Identities=15%  Similarity=0.169  Sum_probs=90.6

Q ss_pred             HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHH--HCCCCCcEEEEEceeeEee
Q psy14674         66 YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVD--KNNLSDVVTILKGKVEEVE  140 (519)
Q Consensus        66 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~--~~~~~~~i~~~~~d~~~~~  140 (519)
                      +++.+.....+.++.+|||+|||+|.++..+++. + ..+|+|+|+| +|++.|+++..  ..+...+++++++|+++++
T Consensus        61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp  140 (261)
T PLN02233         61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP  140 (261)
T ss_pred             HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence            3333333445677899999999999999988875 3 3599999999 69999987754  2223346999999999887


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +++  ++||+|++....+++   .....++.++.|+|||||.++...
T Consensus       141 ~~~--~sfD~V~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~i~d  182 (261)
T PLN02233        141 FDD--CYFDAITMGYGLRNV---VDRLKAMQEMYRVLKPGSRVSILD  182 (261)
T ss_pred             CCC--CCEeEEEEecccccC---CCHHHHHHHHHHHcCcCcEEEEEE
Confidence            775  789999987664433   457788999999999999987543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.54  E-value=5e-14  Score=133.24  Aligned_cols=104  Identities=18%  Similarity=0.274  Sum_probs=87.8

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ...++.+|||+|||+|.++..+++.|. +|+|+|+| +|++.|+++++.+++.+ ++++.+|+.++.++   ++||+|++
T Consensus        27 ~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~---~~fD~I~~  101 (197)
T PRK11207         27 KVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFD---GEYDFILS  101 (197)
T ss_pred             ccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcC---CCcCEEEE
Confidence            345678999999999999999999876 99999999 69999999999888854 88999998876554   67999999


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ..+.+++. ......++.++.++|+|||.++
T Consensus       102 ~~~~~~~~-~~~~~~~l~~i~~~LkpgG~~~  131 (197)
T PRK11207        102 TVVLMFLE-AKTIPGLIANMQRCTKPGGYNL  131 (197)
T ss_pred             ecchhhCC-HHHHHHHHHHHHHHcCCCcEEE
Confidence            87765543 3457888999999999999854

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.54  E-value=2.9e-14  Score=117.45  Aligned_cols=94  Identities=31%  Similarity=0.466  Sum_probs=78.4

Q ss_pred             EEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccc
Q psy14674         83 LDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLF  161 (519)
Q Consensus        83 LDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~  161 (519)
                      ||+|||+|..+..+++.+..+|+|+|++ ++++.++++....+    +.++.+|++++++++  ++||+|++....+++ 
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~--~sfD~v~~~~~~~~~-   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPFPD--NSFDVVFSNSVLHHL-   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-T--T-EEEEEEESHGGGS-
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCcccc--ccccccccccceeec-
Confidence            8999999999999999966699999999 69999999876543    669999999987776  899999998876655 


Q ss_pred             cchhHHHHHHHHhcccCcCeEEEc
Q psy14674        162 YESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       162 ~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                        .....+++++.|+|||||.++.
T Consensus        74 --~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   74 --EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             --cCHHHHHHHHHHHcCcCeEEeC
Confidence              5688899999999999999873

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.53  E-value=7.4e-14  Score=130.38  Aligned_cols=104  Identities=23%  Similarity=0.336  Sum_probs=87.3

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      .+.++.+|||+|||+|..++.+++. +..+|+|+|++ +|++.|+++++.+++.+ ++++++|+.++.. .  ++||+|+
T Consensus        42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-~--~~fDlV~  117 (187)
T PRK00107         42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-E--EKFDVVT  117 (187)
T ss_pred             hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-C--CCccEEE
Confidence            3445899999999999999988864 56699999999 69999999999999876 9999999988654 2  7999999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +..+       ..++.++.++.++|||||.++.-...
T Consensus       118 ~~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~~  147 (187)
T PRK00107        118 SRAV-------ASLSDLVELCLPLLKPGGRFLALKGR  147 (187)
T ss_pred             Eccc-------cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence            8653       23567888999999999999866544

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.53  E-value=6.8e-14  Score=126.75  Aligned_cols=106  Identities=31%  Similarity=0.482  Sum_probs=88.2

Q ss_pred             CCCCEEEEECCcccHHHHHHH-Hc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAA-KS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDII  151 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la-~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~I  151 (519)
                      .++.+|||+|||+|.++..++ +. +..+++|+|+| +|++.|+++++.+++. +++++++|+.+++  ++   ++||+|
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~---~~~D~I   77 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE---EKFDII   77 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS---TTEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC---CCeeEE
Confidence            467899999999999999999 43 35699999999 6999999999999998 6999999999865  33   689999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++..+.   .+......+++.+.++|++||.++.....
T Consensus        78 ~~~~~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   78 ISNGVL---HHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEESTG---GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEcCch---hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            998774   33455678899999999999999855544

...

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.53  E-value=3.7e-14  Score=133.91  Aligned_cols=103  Identities=17%  Similarity=0.224  Sum_probs=85.0

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ...++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.++++++.+++.  +.+..+|+...+++   ++||+|++
T Consensus        27 ~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~---~~fD~I~~  100 (195)
T TIGR00477        27 KTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN---EDYDFIFS  100 (195)
T ss_pred             ccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc---CCCCEEEE
Confidence            344567999999999999999999876 99999999 6999999999888874  77788887655544   67999999


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ..+.+++.. .....+++.+.++|||||.++
T Consensus       101 ~~~~~~~~~-~~~~~~l~~~~~~LkpgG~ll  130 (195)
T TIGR00477       101 TVVFMFLQA-GRVPEIIANMQAHTRPGGYNL  130 (195)
T ss_pred             ecccccCCH-HHHHHHHHHHHHHhCCCcEEE
Confidence            887665533 457788999999999999855

Part of a tellurite-reducing operon tehA and tehB

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.52  E-value=1.1e-13  Score=128.69  Aligned_cols=106  Identities=19%  Similarity=0.317  Sum_probs=86.6

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ....++.++||+|||.|..++++|+.|. .|+|+|.| ..++.+++.++..+++  |+....|+.+..++   +.||+|+
T Consensus        26 ~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~---~~yD~I~   99 (192)
T PF03848_consen   26 VPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP---EEYDFIV   99 (192)
T ss_dssp             CTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T---TTEEEEE
T ss_pred             HhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc---CCcCEEE
Confidence            3455678999999999999999999999 89999999 5899999999988886  99999999988776   7899999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      |..+.+++.. +..+.+++.+...++|||+++..
T Consensus       100 st~v~~fL~~-~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen  100 STVVFMFLQR-ELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             EESSGGGS-G-GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEeccCCH-HHHHHHHHHHHhhcCCcEEEEEE
Confidence            9877777664 46788999999999999998753

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.52  E-value=1.1e-13  Score=134.36  Aligned_cols=115  Identities=21%  Similarity=0.289  Sum_probs=92.5

Q ss_pred             HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC
Q psy14674         66 YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP  142 (519)
Q Consensus        66 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~  142 (519)
                      +++.++....+.++.+|||+|||+|.++..+++. + ..+|+|+|+| ++++.|+++.+..++ ++++++.+|+.+++++
T Consensus        33 ~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~  111 (231)
T TIGR02752        33 WRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFD  111 (231)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCC
Confidence            3445555566778899999999999999988875 3 4599999999 699999999988877 4599999999887666


Q ss_pred             CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      .  ++||+|++....+   +......+++++.++|+|||.++..
T Consensus       112 ~--~~fD~V~~~~~l~---~~~~~~~~l~~~~~~Lk~gG~l~~~  150 (231)
T TIGR02752       112 D--NSFDYVTIGFGLR---NVPDYMQVLREMYRVVKPGGKVVCL  150 (231)
T ss_pred             C--CCccEEEEecccc---cCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            5  7999999865533   3344667889999999999998743

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>KOG1270|consensus

Probab=99.51  E-value=1.3e-14  Score=137.41  Aligned_cols=102  Identities=30%  Similarity=0.411  Sum_probs=84.4

Q ss_pred             CCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCC-----cEEEEEceeeEeecCCCCceeeEEE
Q psy14674         79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSD-----VVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      |++|||+|||+|+++..+|+.|+ .|+|||++ .|++.|++........+     ++++.+.+++...     ++||+|+
T Consensus        90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~-----~~fDaVv  163 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT-----GKFDAVV  163 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-----cccceee
Confidence            47899999999999999999987 99999999 69999999865554433     3677777777643     6799999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |.-+   +.|-.+++.++..+.++|||||.++.....
T Consensus       164 csev---leHV~dp~~~l~~l~~~lkP~G~lfittin  197 (282)
T KOG1270|consen  164 CSEV---LEHVKDPQEFLNCLSALLKPNGRLFITTIN  197 (282)
T ss_pred             eHHH---HHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence            9776   445567889999999999999999977665

>PLN02244 tocopherol O-methyltransferase

Probab=99.51  E-value=1.2e-13  Score=141.44  Aligned_cols=106  Identities=22%  Similarity=0.222  Sum_probs=90.5

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||||||+|.++..+++....+|+|+|+| .|++.|+++++.+++.++++++.+|+.++++++  ++||+|++..
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~--~~FD~V~s~~  194 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFED--GQFDLVWSME  194 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCC--CCccEEEECC
Confidence            6788999999999999999998633499999999 699999999999998888999999999877665  8999999966


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ..+++   .....++.++.++|||||.++...
T Consensus       195 ~~~h~---~d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        195 SGEHM---PDKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             chhcc---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence            64444   346778999999999999998643

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.48  E-value=1.2e-13  Score=137.29  Aligned_cols=100  Identities=32%  Similarity=0.467  Sum_probs=79.6

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..++++|||+|||||+|++.+++.|+++|+|+|++ .+++.|++|++.|++.+++.+.  ...  ..+.  ++||+|++|
T Consensus       159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~--~~~~--~~~dlvvAN  232 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSE--DLVE--GKFDLVVAN  232 (295)
T ss_dssp             SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTS--CTCC--S-EEEEEEE
T ss_pred             ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eec--cccc--ccCCEEEEC
Confidence            56788999999999999999999999999999999 5999999999999999877663  111  2333  799999999


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ....      .+..++..+.++|+|||.++.+-
T Consensus       233 I~~~------vL~~l~~~~~~~l~~~G~lIlSG  259 (295)
T PF06325_consen  233 ILAD------VLLELAPDIASLLKPGGYLILSG  259 (295)
T ss_dssp             S-HH------HHHHHHHHCHHHEEEEEEEEEEE
T ss_pred             CCHH------HHHHHHHHHHHhhCCCCEEEEcc
Confidence            8633      34566777889999999998653

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.47  E-value=3.3e-13  Score=125.72  Aligned_cols=101  Identities=25%  Similarity=0.407  Sum_probs=83.1

Q ss_pred             CCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      ++.+|||+|||+|.+++.+++.+ ..+|+|+|.| +|++.|+++++.+++.+ ++++++|++++.. .  ++||+|+++.
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~-~--~~fD~I~s~~  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQH-E--EQFDVITSRA  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccc-c--CCccEEEehh
Confidence            48899999999999999888763 5689999999 69999999999998865 9999999988632 2  7899999975


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +       ..+..+++.+.++|+|||.++.....
T Consensus       118 ~-------~~~~~~~~~~~~~LkpgG~lvi~~~~  144 (181)
T TIGR00138       118 L-------ASLNVLLELTLNLLKVGGYFLAYKGK  144 (181)
T ss_pred             h-------hCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            2       12455677788999999999865443

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=1.4e-13  Score=135.36  Aligned_cols=103  Identities=33%  Similarity=0.439  Sum_probs=82.6

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..+|++|||+|||||+|++.+++.|+++|+|+|+++ +++.|++|++.|++...++....+..+.. ..  ++||+||+|
T Consensus       160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~--~~~DvIVAN  236 (300)
T COG2264         160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-EN--GPFDVIVAN  236 (300)
T ss_pred             hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-cc--CcccEEEeh
Confidence            458999999999999999999999999999999995 89999999999998753333333333322 21  689999999


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      .+..      .+..+...+.+.|||||+++.+-
T Consensus       237 ILA~------vl~~La~~~~~~lkpgg~lIlSG  263 (300)
T COG2264         237 ILAE------VLVELAPDIKRLLKPGGRLILSG  263 (300)
T ss_pred             hhHH------HHHHHHHHHHHHcCCCceEEEEe
Confidence            8633      35567788889999999998664

>KOG1540|consensus

Probab=99.47  E-value=5.1e-13  Score=125.83  Aligned_cols=113  Identities=17%  Similarity=0.233  Sum_probs=93.5

Q ss_pred             HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC------CEEEEEech-HHHHHHHHHHHHCCCCCc--EEEEEcee
Q psy14674         67 RNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GA------ARVIGIECS-NIVEYAKEIVDKNNLSDV--VTILKGKV  136 (519)
Q Consensus        67 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~------~~V~gvD~s-~~~~~A~~~~~~~~~~~~--i~~~~~d~  136 (519)
                      .+.........++.+|||++||||.++..+.+. +.      ++|+.+|+| +|++.++++..+.++...  +.++.+|+
T Consensus        89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA  168 (296)
T KOG1540|consen   89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA  168 (296)
T ss_pred             HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence            444444566677899999999999999887775 33      699999999 699999999988888755  99999999


Q ss_pred             eEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        137 EEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       137 ~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +++++++  ..+|+....   +.+.+-...+..+++++|+|||||++.
T Consensus       169 E~LpFdd--~s~D~yTia---fGIRN~th~~k~l~EAYRVLKpGGrf~  211 (296)
T KOG1540|consen  169 EDLPFDD--DSFDAYTIA---FGIRNVTHIQKALREAYRVLKPGGRFS  211 (296)
T ss_pred             ccCCCCC--CcceeEEEe---cceecCCCHHHHHHHHHHhcCCCcEEE
Confidence            9998887  899999653   335555668888999999999999886

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.47  E-value=3.1e-13  Score=133.13  Aligned_cols=104  Identities=22%  Similarity=0.206  Sum_probs=87.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCceeeEEEEe
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKVDIIISE  154 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~D~Ivs~  154 (519)
                      .++.+|||+|||+|.++..+++.|. +|+|+|+| +|++.|+++++..++.++++++++|+.++. .+.  ++||+|++.
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~--~~fD~V~~~  119 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE--TPVDLILFH  119 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC--CCCCEEEeh
Confidence            4567999999999999999999875 99999999 699999999999998888999999998763 333  789999997


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      .+.+++   .....++..+.++|||||.++..
T Consensus       120 ~vl~~~---~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        120 AVLEWV---ADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             hHHHhh---CCHHHHHHHHHHHcCCCeEEEEE
Confidence            765544   33567889999999999998743

>TIGR00452 methyltransferase, putative

Probab=99.46  E-value=4.1e-13  Score=135.01  Aligned_cols=114  Identities=18%  Similarity=0.187  Sum_probs=87.4

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .++......+|++|||||||+|.++..++..|+.+|+|+|+| .|+..++...+..+...++.+..+++++++..   .+
T Consensus       112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~---~~  188 (314)
T TIGR00452       112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL---YA  188 (314)
T ss_pred             HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC---CC
Confidence            344445567889999999999999998888888899999999 58776544333222234688888888876543   58


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      ||+|+|..+.++.   .....++.++++.|||||.++.+..
T Consensus       189 FD~V~s~gvL~H~---~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       189 FDTVFSMGVLYHR---KSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             cCEEEEcchhhcc---CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence            9999998775544   4566789999999999999997653

Known examples to date are restricted to the proteobacteria.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.44  E-value=6.4e-13  Score=134.90  Aligned_cols=109  Identities=22%  Similarity=0.238  Sum_probs=86.5

Q ss_pred             cCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         73 NKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      .....+|++|||||||+|.++..+++.|+.+|+|+|+| .|+..++......+...++.++.+++++++.+   ++||+|
T Consensus       117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~---~~FD~V  193 (322)
T PRK15068        117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPAL---KAFDTV  193 (322)
T ss_pred             hhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCc---CCcCEE
Confidence            34445789999999999999999999988889999999 57776555444333344699999999987663   789999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +|..+.++   ......++..+++.|+|||.++.+.
T Consensus       194 ~s~~vl~H---~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        194 FSMGVLYH---RRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             EECChhhc---cCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            99766443   3456778999999999999999764

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.44  E-value=9.2e-13  Score=121.65  Aligned_cols=104  Identities=31%  Similarity=0.485  Sum_probs=84.0

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCC-EEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAA-RVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~-~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      ++.+|||+|||+|.+++.+++.+.. +|+++|++ .+++.|+++++.|++.+ ++++.+|+.+. ++.  ++||+|+|++
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~-~~~--~~fD~Iv~NP  106 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA-LPD--GKFDLIVSNP  106 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT-CCT--TCEEEEEE--
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc-ccc--cceeEEEEcc
Confidence            6789999999999999999998554 79999999 69999999999999988 99999998663 333  7999999998


Q ss_pred             ccccccc--chhHHHHHHHHhcccCcCeEEEc
Q psy14674        156 MGYCLFY--ESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       156 ~~~~l~~--e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ..+....  ...+..++....++|+|||.++.
T Consensus       107 P~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen  107 PFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             -SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             chhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence            7433221  13567888899999999998853

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.43  E-value=5.4e-13  Score=130.79  Aligned_cols=107  Identities=18%  Similarity=0.350  Sum_probs=88.9

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc---CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS---GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~---g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      +.++.+|||||||+|.++..+++.   +..+|+|+|+| +|++.|+++++.++..++++++++|+.+++.    +.+|+|
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----~~~D~v  129 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----ENASMV  129 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC----CCCCEE
Confidence            457789999999999998888762   45699999999 6999999999988888789999999987644    358999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ++....+++.. .....++..+.+.|||||.++...
T Consensus       130 v~~~~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        130 VLNFTLQFLEP-SERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             ehhhHHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            98777666653 346788999999999999988653

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.43  E-value=5.9e-13  Score=133.39  Aligned_cols=101  Identities=22%  Similarity=0.328  Sum_probs=85.7

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||+|||+|..+..+++.|. +|+|+|.| .+++.++++++.+++  ++++...|+....++   ++||+|++..
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~---~~fD~I~~~~  192 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQ---EEYDFILSTV  192 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccccc---CCccEEEEcc
Confidence            3456999999999999999999876 99999999 699999999998888  488888888775553   7899999988


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +.+++. ......++..+.++|+|||+++
T Consensus       193 vl~~l~-~~~~~~~l~~~~~~LkpgG~~l  220 (287)
T PRK12335        193 VLMFLN-RERIPAIIKNMQEHTNPGGYNL  220 (287)
T ss_pred             hhhhCC-HHHHHHHHHHHHHhcCCCcEEE
Confidence            766654 3457788999999999999865

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.42  E-value=5.7e-13  Score=127.79  Aligned_cols=109  Identities=24%  Similarity=0.342  Sum_probs=90.7

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      .....+|||+|||+|.+++++|++ ...+++|||++ ++++.|+++++.|++.++|+++++|+.++.......+||+|+|
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~  121 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC  121 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence            344789999999999999999998 65799999999 6999999999999999999999999998844333357999999


Q ss_pred             eccccccccc---------------hhHHHHHHHHhcccCcCeEEE
Q psy14674        154 EWMGYCLFYE---------------SMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       154 ~~~~~~l~~e---------------~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ++..+-....               ..++.+++...++|||||.+.
T Consensus       122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~  167 (248)
T COG4123         122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLA  167 (248)
T ss_pred             CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEE
Confidence            9864322211               346788889999999999886

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.40  E-value=9e-13  Score=113.56  Aligned_cols=105  Identities=31%  Similarity=0.475  Sum_probs=85.4

Q ss_pred             CCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEEEEec
Q psy14674         79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDIIISEW  155 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~Ivs~~  155 (519)
                      |.+|||+|||+|.++..+++.+..+++|+|++ ..++.|++++..+++.++++++++|+.+..  ++.  ++||+|++++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~np   78 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVTNP   78 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE--
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEECC
Confidence            56899999999999999999886799999999 599999999999999888999999998875  444  8999999988


Q ss_pred             cccccc-----cchhHHHHHHHHhcccCcCeEEEc
Q psy14674        156 MGYCLF-----YESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       156 ~~~~l~-----~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ......     .......+++++.++|||||.++.
T Consensus        79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence            643211     112456778899999999998874

...

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.40  E-value=1.6e-12  Score=128.50  Aligned_cols=112  Identities=22%  Similarity=0.279  Sum_probs=88.5

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      ++....+.++.+|||||||+|..+..+++....+|+|+|+| .|++.|+++...   .+++.++.+|+.+.+++.  ++|
T Consensus        44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~--~~F  118 (263)
T PTZ00098         44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPE--NTF  118 (263)
T ss_pred             HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCC--CCe
Confidence            44456778899999999999999988877533499999999 699999987654   356999999998766665  799


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      |+|++....+++. ......+++++.++|||||.++...
T Consensus       119 D~V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d  156 (263)
T PTZ00098        119 DMIYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITD  156 (263)
T ss_pred             EEEEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            9999955433332 1257788999999999999998654

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.39  E-value=6.5e-13  Score=111.61  Aligned_cols=95  Identities=25%  Similarity=0.469  Sum_probs=76.0

Q ss_pred             EEEECCcccHHHHHHHHc---C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         82 VLDIGCGTGILSMFAAKS---G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        82 VLDiGcGtG~ls~~la~~---g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      |||+|||+|..+..+++.   + ..+++|+|+| +|++.|+++....+.  +++++++|+.+++...  ++||+|++...
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~--~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSD--GKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHS--SSEEEEEE-TT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccC--CCeeEEEEcCC
Confidence            799999999999988876   3 2699999999 699999999988666  5899999999876554  79999999433


Q ss_pred             -ccccccchhHHHHHHHHhcccCcCe
Q psy14674        157 -GYCLFYESMLDTVLYARDKWLATNG  181 (519)
Q Consensus       157 -~~~l~~e~~l~~~l~~~~r~LkpgG  181 (519)
                       .++ .....+..+++.+.++|+|||
T Consensus        77 ~~~~-~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   77 SLHH-LSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGGG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred             ccCC-CCHHHHHHHHHHHHHHhCCCC
Confidence             444 455678899999999999998

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.39  E-value=5.2e-12  Score=109.61  Aligned_cols=108  Identities=22%  Similarity=0.313  Sum_probs=84.9

Q ss_pred             cCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         73 NKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ...+.++.+|||+|||+|.++..+++. +..+|+|+|.| .+++.|+++++.+++. +++++.+|+.... +...++||+
T Consensus        14 ~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~D~   91 (124)
T TIGR02469        14 KLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEAL-EDSLPEPDR   91 (124)
T ss_pred             HcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccC-hhhcCCCCE
Confidence            345566789999999999999999886 45799999999 6999999999988876 4899988876531 111268999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      |++....      .....+++.+.++|+|||.++.+..
T Consensus        92 v~~~~~~------~~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        92 VFIGGSG------GLLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             EEECCcc------hhHHHHHHHHHHHcCCCCEEEEEec
Confidence            9985421      2346788999999999999987643

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.39  E-value=1.7e-12  Score=127.66  Aligned_cols=102  Identities=23%  Similarity=0.275  Sum_probs=82.4

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ....++.+|||+|||+|.++..+++.|. +|+|+|+| +|++.|+++...      +.++++|+++++++.  ++||+|+
T Consensus        38 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~~------~~~~~~d~~~~~~~~--~~fD~V~  108 (251)
T PRK10258         38 LPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDAA------DHYLAGDIESLPLAT--ATFDLAW  108 (251)
T ss_pred             cCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCC------CCEEEcCcccCcCCC--CcEEEEE
Confidence            3344578999999999999999988765 99999999 699999876431      468899999877665  7899999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ++...+   +...+..++.++.++|+|||.++...
T Consensus       109 s~~~l~---~~~d~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        109 SNLAVQ---WCGNLSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             ECchhh---hcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence            977633   33457788999999999999998654

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.39  E-value=1.4e-12  Score=137.30  Aligned_cols=73  Identities=23%  Similarity=0.395  Sum_probs=62.7

Q ss_pred             eeeeeceEEEEeecceeeEEEEEEEEEEcCCCceeEEecCCCC----CCCCceeEEEeecccccccCCCEEEEEEEEEeC
Q psy14674        413 TIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA----HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPN  488 (519)
Q Consensus       413 ~~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~~~~v~lsT~P~~----~~THWkQt~~~l~~~~~v~~g~~i~g~~~~~~~  488 (519)
                      ..+...++++++++|.+|||++|||+.|.++   |.|||+|..    +.|||+|++|+|++|+.|++|+.|+++|..+.+
T Consensus       360 ~~r~~~~~F~i~~~g~vhGfagwFd~~Ly~~---V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i~R~~~  436 (448)
T PF05185_consen  360 NSRSSELEFKIKRDGVVHGFAGWFDAVLYGD---VVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHIWRKTD  436 (448)
T ss_dssp             SEEEEEEEEEBSSSEEEEEEEEEEEEEEECS---EEEESSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEEEEECC
T ss_pred             hheeeeEEEeeCCCcEEEEEEEEEEEEeeCC---eeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEEEEEcC
Confidence            4577899999999999999999999999865   999999998    899999999999999999999999988775554

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.38  E-value=4.5e-12  Score=120.70  Aligned_cols=107  Identities=20%  Similarity=0.226  Sum_probs=83.5

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      +++.....++.+|||||||+|..+..+++. + ..+|+|+|++ ++++.|+++++.+++.++++++.+|+.+.....  +
T Consensus        64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~--~  141 (205)
T PRK13944         64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH--A  141 (205)
T ss_pred             HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC--C
Confidence            334455678899999999999999888875 2 4589999999 699999999999998878999999998643222  6


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +||+|++......         +..++.+.|+|||+++...
T Consensus       142 ~fD~Ii~~~~~~~---------~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        142 PFDAIIVTAAAST---------IPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             CccEEEEccCcch---------hhHHHHHhcCcCcEEEEEE
Confidence            8999998765221         2235568899999987543

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.37  E-value=3.3e-12  Score=127.10  Aligned_cols=108  Identities=25%  Similarity=0.364  Sum_probs=88.9

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-CC-CEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-GA-ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ..+.++.+|||+|||+|..+..+++. |. .+|+|+|++ +|++.|+++....++. +++++.+|+++++++.  ++||+
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~--~~fD~  149 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVAD--NSVDV  149 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCC--CceeE
Confidence            34678999999999999988877765 43 489999999 6999999999888875 5899999998877665  78999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      |+++.+.++.   .....+++++.++|||||.++...
T Consensus       150 Vi~~~v~~~~---~d~~~~l~~~~r~LkpGG~l~i~~  183 (272)
T PRK11873        150 IISNCVINLS---PDKERVFKEAFRVLKPGGRFAISD  183 (272)
T ss_pred             EEEcCcccCC---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence            9998775433   345678899999999999998654

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.37  E-value=4e-12  Score=127.37  Aligned_cols=102  Identities=30%  Similarity=0.449  Sum_probs=84.5

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..++++|||+|||+|.++..+++.|+.+|+|+|++ .+++.|++++..+++.+++.+..++...  ...  ++||+|+++
T Consensus       157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~--~~fDlVvan  232 (288)
T TIGR00406       157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIE--GKADVIVAN  232 (288)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccC--CCceEEEEe
Confidence            35789999999999999999999888899999999 5999999999999998878888776432  222  789999998


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      .+.      ..+..++..+.++|||||.++.+-
T Consensus       233 ~~~------~~l~~ll~~~~~~LkpgG~li~sg  259 (288)
T TIGR00406       233 ILA------EVIKELYPQFSRLVKPGGWLILSG  259 (288)
T ss_pred             cCH------HHHHHHHHHHHHHcCCCcEEEEEe
Confidence            652      234567888899999999998654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.36  E-value=2.3e-12  Score=118.44  Aligned_cols=106  Identities=25%  Similarity=0.290  Sum_probs=82.7

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      ..-.++||+|||.|.++..+|.+ ..+++++|+| .+++.|+++++.  .+ +|+++++++.+.. |.  ++||+||..-
T Consensus        42 ~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--~~-~V~~~~~dvp~~~-P~--~~FDLIV~SE  114 (201)
T PF05401_consen   42 RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--LP-HVEWIQADVPEFW-PE--GRFDLIVLSE  114 (201)
T ss_dssp             SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TTT----S--S-EEEEEEES
T ss_pred             cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--CC-CeEEEECcCCCCC-CC--CCeeEEEEeh
Confidence            34468999999999999999988 5699999999 599999999865  33 4999999998754 43  8999999999


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++|++.....+..++..+...|+|||.+|.....
T Consensus       115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r  148 (201)
T PF05401_consen  115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR  148 (201)
T ss_dssp             -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            9999987777889999999999999999976544

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR00740 methyltransferase, putative

Probab=99.36  E-value=3.6e-12  Score=124.38  Aligned_cols=106  Identities=23%  Similarity=0.296  Sum_probs=87.6

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc---CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS---GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~---g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      .++.+|||||||+|.++..+++.   +..+|+|+|+| +|++.|+++++..+...+++++++|+.+++++    .+|+|+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~d~v~  127 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK----NASMVI  127 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC----CCCEEe
Confidence            47789999999999999988874   35689999999 69999999998877666799999999876543    589999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +....+++.. .....+++.+.+.|+|||.++...
T Consensus       128 ~~~~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       128 LNFTLQFLPP-EDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             eecchhhCCH-HHHHHHHHHHHHhcCCCeEEEEee
Confidence            8777665543 346778999999999999998664

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.36  E-value=6.6e-12  Score=129.07  Aligned_cols=106  Identities=15%  Similarity=0.171  Sum_probs=84.2

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCC--CcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLS--DVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      .+.+|||+|||+|.+++.+++. +..+|+++|.| .+++.|+++++.|+..  .+++++.+|+.+. ++.  ++||+|+|
T Consensus       228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~--~~fDlIls  304 (378)
T PRK15001        228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEP--FRFNAVLC  304 (378)
T ss_pred             cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCC--CCEEEEEE
Confidence            3569999999999999999887 45699999999 6999999999988754  3689999888653 332  58999999


Q ss_pred             eccccccc--cchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        154 EWMGYCLF--YESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       154 ~~~~~~l~--~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ++..|...  .......++....+.|+|||.++.-
T Consensus       305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence            98755332  2234567888889999999988754

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.35  E-value=3e-12  Score=123.58  Aligned_cols=102  Identities=20%  Similarity=0.215  Sum_probs=85.9

Q ss_pred             CEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc
Q psy14674         80 KIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG  157 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~  157 (519)
                      ++|||||||+|.++..+++. +..+|+|+|+| ++++.|+++++..|+.++++++.+|+.+.+.+   ++||+|++..+.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~---~~fD~I~~~~~l   77 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP---DTYDLVFGFEVI   77 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC---CCCCEeehHHHH
Confidence            47999999999999988876 34689999999 69999999999999999999999998765444   689999987664


Q ss_pred             cccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        158 YCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       158 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ++.   .....+++++.++|||||.++...
T Consensus        78 ~~~---~~~~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       78 HHI---KDKMDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             HhC---CCHHHHHHHHHHHcCCCCEEEEEE
Confidence            444   346788999999999999998653

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.35  E-value=4.4e-12  Score=125.00  Aligned_cols=103  Identities=21%  Similarity=0.280  Sum_probs=82.7

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      ++......++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|++.        +++++++|++++. +.  ++
T Consensus        21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~--~~   89 (255)
T PRK14103         21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-PK--PD   89 (255)
T ss_pred             HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-CC--CC
Confidence            334455677899999999999999988887 34589999999 699998752        2789999998763 33  78


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ||+|+|..+.+++.   ....++.++.+.|||||.++..
T Consensus        90 fD~v~~~~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         90 TDVVVSNAALQWVP---EHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             ceEEEEehhhhhCC---CHHHHHHHHHHhCCCCcEEEEE
Confidence            99999988766553   4577889999999999999864

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.34  E-value=4.5e-12  Score=125.07  Aligned_cols=107  Identities=21%  Similarity=0.290  Sum_probs=85.1

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      .++....+.++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|+++.      .++.++.+|+.++. +.  +
T Consensus        22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~-~~--~   92 (258)
T PRK01683         22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQ-PP--Q   92 (258)
T ss_pred             HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccC-CC--C
Confidence            4444556677899999999999999988876 45699999999 6999998764      23789999998764 32  6


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +||+|++....+++   .....++..+.+.|||||.++...
T Consensus        93 ~fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683         93 ALDLIFANASLQWL---PDHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             CccEEEEccChhhC---CCHHHHHHHHHHhcCCCcEEEEEC
Confidence            89999998775544   345678999999999999988653

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.34  E-value=7.1e-12  Score=134.66  Aligned_cols=108  Identities=24%  Similarity=0.320  Sum_probs=87.5

Q ss_pred             cCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         73 NKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ...+.++.+|||||||+|.++..+++....+|+|+|+| +|++.|+++..  +...+++++.+|+.+.+++.  ++||+|
T Consensus       261 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~--~~fD~I  336 (475)
T PLN02336        261 KLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPD--NSFDVI  336 (475)
T ss_pred             hcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCC--CCEEEE
Confidence            33456788999999999999998887634499999999 69999988765  44456999999998877665  789999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +|..+.+++   .....++.++.++|||||.++...
T Consensus       337 ~s~~~l~h~---~d~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        337 YSRDTILHI---QDKPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             EECCccccc---CCHHHHHHHHHHHcCCCeEEEEEE
Confidence            997664433   456788999999999999998654

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.33  E-value=1.2e-11  Score=117.21  Aligned_cols=111  Identities=23%  Similarity=0.354  Sum_probs=88.0

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      ....+.++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+++.++++++.+|+.+. ++...++|
T Consensus        34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~-l~~~~~~~  112 (198)
T PRK00377         34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI-LFTINEKF  112 (198)
T ss_pred             HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-HhhcCCCC
Confidence            3456788999999999999999988875 3 4699999999 69999999999999767799999998764 11111679


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |.|++..-      ...+..+++.+.+.|+|||.++.+..+
T Consensus       113 D~V~~~~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~  147 (198)
T PRK00377        113 DRIFIGGG------SEKLKEIISASWEIIKKGGRIVIDAIL  147 (198)
T ss_pred             CEEEECCC------cccHHHHHHHHHHHcCCCcEEEEEeec
Confidence            99988431      134567788888999999999875554

>PRK06922 hypothetical protein; Provisional

Probab=99.32  E-value=7.3e-12  Score=134.41  Aligned_cols=109  Identities=20%  Similarity=0.348  Sum_probs=86.0

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDI  150 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~  150 (519)
                      ...++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|+++....+.  ++.++++|+.+++  ++.  ++||+
T Consensus       415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fed--eSFDv  490 (677)
T PRK06922        415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEK--ESVDT  490 (677)
T ss_pred             hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCC--CCEEE
Confidence            4457889999999999988877764 55699999999 699999988766543  4889999988765  444  78999


Q ss_pred             EEEeccccccc----------cchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        151 IISEWMGYCLF----------YESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       151 Ivs~~~~~~l~----------~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      |+++.+.|.+.          ....+..+++++.++|||||.++...
T Consensus       491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            99987655331          12356788999999999999998754

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.32  E-value=1.9e-11  Score=114.63  Aligned_cols=103  Identities=27%  Similarity=0.324  Sum_probs=82.9

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ..+.++.+|||+|||+|.++..+++. +..+|+++|++ .+++.|+++++.+++. +++++.+|+.. .++   ++||+|
T Consensus        27 l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~---~~~D~v  101 (187)
T PRK08287         27 LELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELP---GKADAI  101 (187)
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcC---cCCCEE
Confidence            45568889999999999999998886 34699999999 6999999999988875 49999988753 333   689999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ++....      ..+..++..+.++|+|||.++...
T Consensus       102 ~~~~~~------~~~~~~l~~~~~~Lk~gG~lv~~~  131 (187)
T PRK08287        102 FIGGSG------GNLTAIIDWSLAHLHPGGRLVLTF  131 (187)
T ss_pred             EECCCc------cCHHHHHHHHHHhcCCCeEEEEEE
Confidence            986432      134567788889999999998653

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.32  E-value=1.7e-11  Score=127.31  Aligned_cols=110  Identities=26%  Similarity=0.282  Sum_probs=86.7

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .+.....+.++.+|||||||+|.++..+++....+|+|+|+| ++++.|+++++  ++  .+++..+|..++  +   ++
T Consensus       158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l--~---~~  228 (383)
T PRK11705        158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL--N---GQ  228 (383)
T ss_pred             HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc--C---CC
Confidence            444556678899999999999999999988633499999999 69999999874  33  378888887654  3   68


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      ||+|++..+.++... ..+..+++.+.++|||||.++....
T Consensus       229 fD~Ivs~~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        229 FDRIVSVGMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             CCEEEEeCchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            999999776554432 3467789999999999999987643

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.31  E-value=1.2e-11  Score=118.58  Aligned_cols=106  Identities=25%  Similarity=0.222  Sum_probs=81.9

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSG--AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      +++...+.++.+|||||||+|.++..+++..  ..+|+++|++ ++++.|+++++.+++. +++++.+|+.+.....  +
T Consensus        69 ~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~~~--~  145 (215)
T TIGR00080        69 MTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWEPL--A  145 (215)
T ss_pred             HHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCccc--C
Confidence            3334557789999999999999999998873  2469999999 6999999999999984 5999999997643222  6


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +||+|++.....         .+...+.+.|+|||+++...
T Consensus       146 ~fD~Ii~~~~~~---------~~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       146 PYDRIYVTAAGP---------KIPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             CCCEEEEcCCcc---------cccHHHHHhcCcCcEEEEEE
Confidence            899999865321         12344567899999988543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.31  E-value=1.4e-11  Score=117.93  Aligned_cols=106  Identities=24%  Similarity=0.229  Sum_probs=82.1

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      ++....+.++.+|||||||+|.++..+++. + ..+|+++|++ ++++.|+++++.+++. +++++++|..+...+.  +
T Consensus        68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~~~~--~  144 (212)
T PRK13942         68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGYEEN--A  144 (212)
T ss_pred             HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCcC--C
Confidence            334456778999999999999999988876 3 3599999999 6999999999998875 5999999987653333  7


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +||+|++.....         .+..++.+.|||||+++...
T Consensus       145 ~fD~I~~~~~~~---------~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        145 PYDRIYVTAAGP---------DIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CcCEEEECCCcc---------cchHHHHHhhCCCcEEEEEE
Confidence            899998854311         12234567899999987543

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.31  E-value=1.3e-11  Score=115.01  Aligned_cols=105  Identities=20%  Similarity=0.198  Sum_probs=83.4

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+| .|++.|+++++.++.  +++++.+|+.+. .+   ++||+|+++
T Consensus        17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~~---~~fD~Vi~n   89 (179)
T TIGR00537        17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKG-VR---GKFDVILFN   89 (179)
T ss_pred             hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccc-cC---CcccEEEEC
Confidence            34567899999999999999999876 99999999 699999999998876  388999998763 22   689999998


Q ss_pred             cccccccc------------------chhHHHHHHHHhcccCcCeEEEccC
Q psy14674        155 WMGYCLFY------------------ESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l~~------------------e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +..+....                  ......++.++.++|+|||.++...
T Consensus        90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537        90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ  140 (179)
T ss_pred             CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence            75432221                  1125678889999999999887543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.31  E-value=9e-12  Score=118.30  Aligned_cols=109  Identities=22%  Similarity=0.205  Sum_probs=84.4

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee-eEee--cCCCCceeeEEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV-EEVE--LPFGIQKVDIII  152 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~~~D~Iv  152 (519)
                      ++.+|||+|||+|.++..+++. +..+|+|+|+| +|++.|+++++.+++. +++++++|+ +.+.  ++.  ++||+|+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~--~~~D~V~  116 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPD--GSLDRIY  116 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCc--cccceEE
Confidence            5779999999999999988876 45689999999 6999999999988874 599999999 6554  443  7899999


Q ss_pred             Eeccccccc--c---chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLF--Y---ESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~--~---e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +........  +   ......+++++.++|||||.++.....
T Consensus       117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~  158 (202)
T PRK00121        117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW  158 (202)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence            865321111  0   012467789999999999999865433

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.30  E-value=7.2e-13  Score=110.81  Aligned_cols=97  Identities=26%  Similarity=0.311  Sum_probs=61.0

Q ss_pred             EEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecccccc
Q psy14674         83 LDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCL  160 (519)
Q Consensus        83 LDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l  160 (519)
                      ||||||+|.++..+++. +..+++|+|+| .|++.|+++....+... ...+..+..+.......++||+|++..+.+++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVASNVLHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhhhhHhhh
Confidence            79999999998887776 55599999999 69999999988876543 33444333332211111599999998886666


Q ss_pred             ccchhHHHHHHHHhcccCcCeEE
Q psy14674        161 FYESMLDTVLYARDKWLATNGLL  183 (519)
Q Consensus       161 ~~e~~l~~~l~~~~r~LkpgG~l  183 (519)
                         ..+..+++.+.++|||||.+
T Consensus        80 ---~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 ---EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ---S-HHHHHHHHTTT-TSS-EE
T ss_pred             ---hhHHHHHHHHHHHcCCCCCC
Confidence               56778999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.29  E-value=1.4e-11  Score=124.82  Aligned_cols=100  Identities=20%  Similarity=0.164  Sum_probs=80.7

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      .++.+|||||||+|.++..+++. +..+|+++|.| +|++.|+++...    .+++++.+|+++++++.  ++||+|++.
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~--~sFDvVIs~  185 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPT--DYADRYVSA  185 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCC--CceeEEEEc
Confidence            45789999999999998888765 55699999999 699999987643    24789999999876665  789999997


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .+.+++   .....+++++.++|||||.++.
T Consensus       186 ~~L~~~---~d~~~~L~e~~rvLkPGG~LvI  213 (340)
T PLN02490        186 GSIEYW---PDPQRGIKEAYRVLKIGGKACL  213 (340)
T ss_pred             ChhhhC---CCHHHHHHHHHHhcCCCcEEEE
Confidence            664433   3456789999999999999864

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.29  E-value=3.1e-11  Score=120.52  Aligned_cols=109  Identities=24%  Similarity=0.332  Sum_probs=86.3

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      ++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|+++++.+++.++++++++|+.+. ++.  ++||+|++++
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~--~~fD~Iv~NP  197 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPG--RKYDLIVSNP  197 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCC--CCccEEEECC
Confidence            4579999999999999999986 34599999999 69999999999999988899999998652 343  5899999986


Q ss_pred             cccc----------cccc------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYC----------LFYE------------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~----------l~~e------------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ...-          ..+|            .....++..+.++|+|||.++.+...
T Consensus       198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~  253 (284)
T TIGR03533       198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN  253 (284)
T ss_pred             CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            4110          0111            23466788888999999999977654

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK08317 hypothetical protein; Provisional

Probab=99.29  E-value=3.3e-11  Score=116.86  Aligned_cols=116  Identities=25%  Similarity=0.340  Sum_probs=90.5

Q ss_pred             HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC
Q psy14674         66 YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP  142 (519)
Q Consensus        66 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~  142 (519)
                      |++.++....+.++.+|||+|||+|.++..+++.  +..+|+|+|++ .+++.|+++..  ....+++++.+|+.+.+++
T Consensus         7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~~   84 (241)
T PRK08317          7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLPFP   84 (241)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCCCC
Confidence            4444555567788999999999999999988876  34699999999 69999988733  2334689999999877665


Q ss_pred             CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      .  ++||+|++..+.+++   .....++..+.++|||||.++....
T Consensus        85 ~--~~~D~v~~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         85 D--GSFDAVRSDRVLQHL---EDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             C--CCceEEEEechhhcc---CCHHHHHHHHHHHhcCCcEEEEEec
Confidence            5  789999997764433   3467788999999999999886543

>PRK14967 putative methyltransferase; Provisional

Probab=99.29  E-value=3.2e-11  Score=116.38  Aligned_cols=108  Identities=26%  Similarity=0.278  Sum_probs=84.7

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ..+.++.+|||+|||+|.++..+++.++.+|+|+|++ .+++.|+++++.+++  +++++.+|+.+. ++.  ++||+|+
T Consensus        32 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~--~~fD~Vi  106 (223)
T PRK14967         32 EGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEF--RPFDVVV  106 (223)
T ss_pred             cccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccC--CCeeEEE
Confidence            3456788999999999999999998877799999999 699999999988876  388999998763 343  7899999


Q ss_pred             Eeccccccc------------------cchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        153 SEWMGYCLF------------------YESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       153 s~~~~~~l~------------------~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +++......                  ....+..++.++.++|||||.++..
T Consensus       107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967        107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            986421110                  0112566788888999999999853

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.28  E-value=1.6e-11  Score=120.54  Aligned_cols=96  Identities=32%  Similarity=0.509  Sum_probs=77.2

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..++++|||+|||+|.+++.+++.|+.+|+|+|+| .+++.|+++++.+++.+++.+..++          .+||+|+++
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~----------~~fD~Vvan  186 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD----------LKADVIVAN  186 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC----------CCcCEEEEc
Confidence            45789999999999999999998888789999999 5999999999998875444433221          269999997


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ...      ..+..++..+.++|||||.++...
T Consensus       187 i~~------~~~~~l~~~~~~~LkpgG~lilsg  213 (250)
T PRK00517        187 ILA------NPLLELAPDLARLLKPGGRLILSG  213 (250)
T ss_pred             CcH------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence            542      234567788889999999999653

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.27  E-value=3.6e-11  Score=116.78  Aligned_cols=109  Identities=25%  Similarity=0.337  Sum_probs=88.4

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKSG--AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      ......++.+|||+|||+|.++..+++.+  ..+++++|++ .+++.+++++..++...+++++.+|+.+...+.  ++|
T Consensus        45 ~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~  122 (239)
T PRK00216         45 KWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD--NSF  122 (239)
T ss_pred             HHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC--CCc
Confidence            33445577899999999999999998875  4799999999 699999999887777677999999998765543  789


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      |+|++....+   +......++..+.++|+|||.++.
T Consensus       123 D~I~~~~~l~---~~~~~~~~l~~~~~~L~~gG~li~  156 (239)
T PRK00216        123 DAVTIAFGLR---NVPDIDKALREMYRVLKPGGRLVI  156 (239)
T ss_pred             cEEEEecccc---cCCCHHHHHHHHHHhccCCcEEEE
Confidence            9998865533   334577889999999999998874

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.27  E-value=3.2e-11  Score=117.85  Aligned_cols=109  Identities=28%  Similarity=0.213  Sum_probs=80.6

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ....|++|||||||.|..+..++++|++.|+|+|.+. .....+...+-.|....+..+...+++++. .  +.||+|+|
T Consensus       112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~--~~FDtVF~  188 (315)
T PF08003_consen  112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L--GAFDTVFS  188 (315)
T ss_pred             CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c--CCcCEEEE
Confidence            4568999999999999999999999999999999993 333333222223333334455456666544 2  89999999


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      -.+.||.   ...-..+..++..|+|||.+|.++..
T Consensus       189 MGVLYHr---r~Pl~~L~~Lk~~L~~gGeLvLETlv  221 (315)
T PF08003_consen  189 MGVLYHR---RSPLDHLKQLKDSLRPGGELVLETLV  221 (315)
T ss_pred             eeehhcc---CCHHHHHHHHHHhhCCCCEEEEEEee
Confidence            8885554   44556688889999999999988765

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.27  E-value=2.2e-11  Score=126.66  Aligned_cols=113  Identities=19%  Similarity=0.200  Sum_probs=88.7

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCC-CcEEEEEceeeEee--cCCCCceeeEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS-DVVTILKGKVEEVE--LPFGIQKVDIII  152 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~~~~D~Iv  152 (519)
                      .++++|||+|||+|.+++.++..|+.+|++||+| .+++.|+++++.|++. ++++++++|+.++.  +....++||+|+
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            4688999999999999998887788899999999 6999999999999996 57999999998751  211125899999


Q ss_pred             Eeccccccccc------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYE------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +++........      ..+..++....++|+|||.++..+++
T Consensus       299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs  341 (396)
T PRK15128        299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS  341 (396)
T ss_pred             ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            99874322111      12445556677999999999987776

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.26  E-value=3.3e-11  Score=123.19  Aligned_cols=115  Identities=24%  Similarity=0.289  Sum_probs=92.0

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      ++.......++.+|||+|||+|.++..++..|+ +|+|+|++ .|++.|+++++.+++.+ +.++++|+.+++++.  ++
T Consensus       173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~--~~  248 (329)
T TIGR01177       173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSS--ES  248 (329)
T ss_pred             HHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCccc--CC
Confidence            444445667889999999999999988888765 99999999 69999999999999887 899999999876654  78


Q ss_pred             eeEEEEeccccc---cc---cchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        148 VDIIISEWMGYC---LF---YESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       148 ~D~Ivs~~~~~~---l~---~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ||+|++++....   ..   .......++..+.+.|||||+++.-.
T Consensus       249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~  294 (329)
T TIGR01177       249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV  294 (329)
T ss_pred             CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence            999999864211   11   11345778999999999999887443

This family is found exclusively in the Archaea.

>KOG4300|consensus

Probab=99.25  E-value=2.7e-11  Score=110.79  Aligned_cols=99  Identities=19%  Similarity=0.208  Sum_probs=81.5

Q ss_pred             EEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEE-EEEceeeEee-cCCCCceeeEEEEeccc
Q psy14674         81 IVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVT-ILKGKVEEVE-LPFGIQKVDIIISEWMG  157 (519)
Q Consensus        81 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~~~~D~Ivs~~~~  157 (519)
                      .||+||||||..-.+.--.+..+|+++|++ .|-+.|.+.++++.... ++ |+.++.++++ +++  +++|+||+..+ 
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l~d--~s~DtVV~Tlv-  154 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQLAD--GSYDTVVCTLV-  154 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCccccc--CCeeeEEEEEE-
Confidence            589999999987776665556699999999 59999999998885544 66 9999999985 666  89999999776 


Q ss_pred             cccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        158 YCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       158 ~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                        +.........|++..|+|+|||++++
T Consensus       155 --LCSve~~~k~L~e~~rlLRpgG~iif  180 (252)
T KOG4300|consen  155 --LCSVEDPVKQLNEVRRLLRPGGRIIF  180 (252)
T ss_pred             --EeccCCHHHHHHHHHHhcCCCcEEEE
Confidence              33445677789999999999998873

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.25  E-value=6.8e-11  Score=107.89  Aligned_cols=119  Identities=25%  Similarity=0.323  Sum_probs=96.2

Q ss_pred             hhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEE
Q psy14674         56 MLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILK  133 (519)
Q Consensus        56 ~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~  133 (519)
                      |.+..+|...     +....+.+|.+++|||||||.++..++.. +..+|||+|.+ ++++..++|+++.|.+ +++++.
T Consensus        17 ~TK~EIRal~-----ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~   90 (187)
T COG2242          17 MTKEEIRALT-----LSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-NLEVVE   90 (187)
T ss_pred             CcHHHHHHHH-----HHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEe
Confidence            6666666443     33467889999999999999999999866 47799999999 6999999999999965 599999


Q ss_pred             ceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        134 GKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       134 ~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +++-+. ++.. .++|.|+...-       ..++.+++.+...|||||++|.+..+
T Consensus        91 g~Ap~~-L~~~-~~~daiFIGGg-------~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242          91 GDAPEA-LPDL-PSPDAIFIGGG-------GNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             ccchHh-hcCC-CCCCEEEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence            999875 3321 37999975432       45778888889999999999988877

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.25  E-value=5.8e-11  Score=114.05  Aligned_cols=110  Identities=25%  Similarity=0.331  Sum_probs=86.4

Q ss_pred             HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCC
Q psy14674         68 NSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGA--ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFG  144 (519)
Q Consensus        68 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~  144 (519)
                      ..++......++.+|||+|||+|.++..+++.+.  .+++++|++ .+++.++++..   ...+++++.+|+.+...+. 
T Consensus        29 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~-  104 (223)
T TIGR01934        29 RRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFED-  104 (223)
T ss_pred             HHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCC-
Confidence            3444444455789999999999999998888754  489999999 68999888765   3456899999998866544 


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                       ++||+|++....   .+......+++.+.++|+|||.++.
T Consensus       105 -~~~D~i~~~~~~---~~~~~~~~~l~~~~~~L~~gG~l~~  141 (223)
T TIGR01934       105 -NSFDAVTIAFGL---RNVTDIQKALREMYRVLKPGGRLVI  141 (223)
T ss_pred             -CcEEEEEEeeee---CCcccHHHHHHHHHHHcCCCcEEEE
Confidence             789999986653   3334577889999999999999884

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.24  E-value=5.5e-11  Score=122.47  Aligned_cols=134  Identities=22%  Similarity=0.210  Sum_probs=97.0

Q ss_pred             cccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCc
Q psy14674         51 GIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDV  128 (519)
Q Consensus        51 ~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~  128 (519)
                      ......+.....++.+.+.++..  +.++.+|||+|||+|.+++.+++. +..+|+|+|+| +|++.|+++++.++.  +
T Consensus       226 ~V~p~vLIPRpeTE~LVe~aL~~--l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--r  301 (423)
T PRK14966        226 AVNPNVLIPRPETEHLVEAVLAR--LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--R  301 (423)
T ss_pred             EeCCCccCCCccHHHHHHHhhhc--cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--c
Confidence            34444555556677777766543  345679999999999999988865 56699999999 699999999998875  5


Q ss_pred             EEEEEceeeEeecCCCCceeeEEEEecccccc----------ccc------------hhHHHHHHHHhcccCcCeEEEcc
Q psy14674        129 VTILKGKVEEVELPFGIQKVDIIISEWMGYCL----------FYE------------SMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       129 i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l----------~~e------------~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ++++++|+.+...+. .++||+|+|++.....          .+|            .....++..+.+.|+|||.++.+
T Consensus       302 V~fi~gDl~e~~l~~-~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE  380 (423)
T PRK14966        302 VEFAHGSWFDTDMPS-EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE  380 (423)
T ss_pred             EEEEEcchhcccccc-CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            999999987643332 1579999998852110          001            23456777778899999998865


Q ss_pred             CCc
Q psy14674        187 KAS  189 (519)
Q Consensus       187 ~~~  189 (519)
                      ...
T Consensus       381 iG~  383 (423)
T PRK14966        381 HGF  383 (423)
T ss_pred             ECc
Confidence            544

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.23  E-value=7e-11  Score=119.15  Aligned_cols=107  Identities=21%  Similarity=0.339  Sum_probs=85.2

Q ss_pred             CEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc
Q psy14674         80 KIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG  157 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~  157 (519)
                      .+|||+|||+|.++..+++. +..+|+|+|+| .+++.|+++++.+++.++++++++|+.+. ++.  ++||+|++++..
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~--~~fDlIvsNPPy  211 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPG--RRYDLIVSNPPY  211 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCC--CCccEEEECCCC
Confidence            68999999999999998876 45699999999 69999999999999988899999998652 343  689999998631


Q ss_pred             cc----------cccc------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        158 YC----------LFYE------------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       158 ~~----------l~~e------------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ..          ..++            .....++..+.++|+|||.++.+...
T Consensus       212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~  265 (307)
T PRK11805        212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN  265 (307)
T ss_pred             CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            10          0111            23467788888999999999976554

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.23  E-value=3.9e-11  Score=113.22  Aligned_cols=109  Identities=22%  Similarity=0.271  Sum_probs=84.3

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee---cCCCCceeeEEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE---LPFGIQKVDIII  152 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~~~D~Iv  152 (519)
                      .+.+|||||||+|.++..+++. +..+|+|+|++ +|++.|++++...++. +++++++|+.++.   ++.  +.+|.|+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~--~~~d~v~   92 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPD--GSLSKVF   92 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCC--CceeEEE
Confidence            4569999999999999888876 55699999999 6999999999988886 5999999998653   333  5899999


Q ss_pred             Eecccccccc-----chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFY-----ESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~-----e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++........     .-....++..+.++|||||.++.....
T Consensus        93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~  134 (194)
T TIGR00091        93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN  134 (194)
T ss_pred             EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence            8754221111     111256788999999999999865544

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.23  E-value=4.8e-11  Score=119.42  Aligned_cols=107  Identities=28%  Similarity=0.406  Sum_probs=86.0

Q ss_pred             CEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc
Q psy14674         80 KIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG  157 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~  157 (519)
                      .+|||+|||+|.+++.+++.. ..+|+|+|+| ++++.|+++++.+++.++++++++|+.+ .++.  .+||+|+|++..
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~--~~fDlIvsNPPy  192 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAG--QKIDIIVSNPPY  192 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcC--CCccEEEECCCC
Confidence            699999999999999998863 4599999999 6999999999999998789999999876 3442  489999997531


Q ss_pred             c----------ccccc------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        158 Y----------CLFYE------------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       158 ~----------~l~~e------------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .          ...++            .....++....++|+|||.++.+...
T Consensus       193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~  246 (284)
T TIGR00536       193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN  246 (284)
T ss_pred             CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence            1          01111            24567888888999999999987766

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=6.5e-11  Score=115.96  Aligned_cols=111  Identities=24%  Similarity=0.317  Sum_probs=85.9

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      .++++.....+.+|||+|||.|.+++.+++. +..+++-+|.+ .+++.|+++++.|++.+. .++..|..+ +..   +
T Consensus       149 lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~-~v~---~  223 (300)
T COG2813         149 LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYE-PVE---G  223 (300)
T ss_pred             HHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccc-ccc---c
Confidence            3444555555569999999999999999988 56799999999 699999999999999864 667766654 333   5


Q ss_pred             eeeEEEEeccccccccc--hhHHHHHHHHhcccCcCeEEE
Q psy14674        147 KVDIIISEWMGYCLFYE--SMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e--~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +||+|||++..|--...  ..-+.++.+..+.|++||.+.
T Consensus       224 kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~  263 (300)
T COG2813         224 KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELW  263 (300)
T ss_pred             cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence            89999999985532211  123478888899999999764

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.23  E-value=8.4e-11  Score=113.13  Aligned_cols=105  Identities=25%  Similarity=0.277  Sum_probs=84.7

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+| +|++.|+++...++..+++++.++|+.+.+     ++||+|++.
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~fD~ii~~  126 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-----GEFDIVVCM  126 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-----CCcCEEEEh
Confidence            56789999999999999999998865 99999999 699999999988887667999999988643     579999986


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      .+.+++. ...+..++..+.+++++++++....
T Consensus       127 ~~l~~~~-~~~~~~~l~~i~~~~~~~~~i~~~~  158 (219)
T TIGR02021       127 DVLIHYP-ASDMAKALGHLASLTKERVIFTFAP  158 (219)
T ss_pred             hHHHhCC-HHHHHHHHHHHHHHhCCCEEEEECC
Confidence            5544332 2346677888888888887766443

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=99.23  E-value=1.5e-11  Score=110.51  Aligned_cols=134  Identities=23%  Similarity=0.371  Sum_probs=110.8

Q ss_pred             cccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcE
Q psy14674         51 GIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVV  129 (519)
Q Consensus        51 ~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i  129 (519)
                      .+|-..+.|..|-..|..+|.+...    ..+.|+|+|+|++++.+|++ +.+|+|+|.++ ..++|.+++.-+|..+ +
T Consensus         9 ~yh~~LL~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n-~   82 (252)
T COG4076           9 SYHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVN-W   82 (252)
T ss_pred             hhHhhhhhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcc-e
Confidence            4677889999999999999965432    68999999999999999998 88999999995 8999999988778754 9


Q ss_pred             EEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccccc
Q psy14674        130 TILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGI  195 (519)
Q Consensus       130 ~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i  195 (519)
                      +++.+|+.+..+    +..|+|+|+.+...+..|...+ ++.++..+||-++.++|.....-+.++
T Consensus        83 evv~gDA~~y~f----e~ADvvicEmlDTaLi~E~qVp-V~n~vleFLr~d~tiiPq~v~~~a~pv  143 (252)
T COG4076          83 EVVVGDARDYDF----ENADVVICEMLDTALIEEKQVP-VINAVLEFLRYDPTIIPQEVRIGANPV  143 (252)
T ss_pred             EEEecccccccc----cccceeHHHHhhHHhhcccccH-HHHHHHHHhhcCCccccHHHhhccCcc
Confidence            999999998766    4689999999888787776554 456666799999999999877433333

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.22  E-value=8.5e-11  Score=120.06  Aligned_cols=103  Identities=23%  Similarity=0.249  Sum_probs=81.9

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      ...+|||+|||+|.++..+++. +..+|+++|+| .|++.|+++++.+++.  .+++.+|+.+. .+   ++||+|+|++
T Consensus       196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~~---~~fDlIvsNP  269 (342)
T PRK09489        196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-IK---GRFDMIISNP  269 (342)
T ss_pred             CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-cC---CCccEEEECC
Confidence            3458999999999999999887 44589999999 6999999999999875  46777777542 33   7899999998


Q ss_pred             ccccccc--chhHHHHHHHHhcccCcCeEEEcc
Q psy14674        156 MGYCLFY--ESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       156 ~~~~l~~--e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ..|....  ....+.++..+.+.|||||.++.-
T Consensus       270 PFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV  302 (342)
T PRK09489        270 PFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (342)
T ss_pred             CccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence            7553221  234678899999999999988643

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.21  E-value=3.6e-11  Score=109.20  Aligned_cols=97  Identities=30%  Similarity=0.358  Sum_probs=74.9

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..++++|||||||+|.++..+++.|. +|+|+|++ .+++.           .++.....+......+.  ++||+|+|.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~--~~fD~i~~~   85 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPD--GSFDLIICN   85 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHS--SSEEEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccc--cchhhHhhH
Confidence            67889999999999999999999888 99999999 57776           11233332222323343  899999998


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .+.+++.   ....++..+.++|||||+++.....
T Consensus        86 ~~l~~~~---d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   86 DVLEHLP---DPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             SSGGGSS---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             HHHhhcc---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            8866554   5788999999999999999976654

...

>KOG1271|consensus

Probab=99.21  E-value=6.4e-11  Score=106.18  Aligned_cols=112  Identities=21%  Similarity=0.328  Sum_probs=87.5

Q ss_pred             CCCCC-EEEEECCcccHHHHHHHHcCCCE-EEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         76 LFKGK-IVLDIGCGTGILSMFAAKSGAAR-VIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        76 ~~~~~-~VLDiGcGtG~ls~~la~~g~~~-V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      +.+.. +|||+|||.|.+...+++.|... .+|+|.| .+++.|+..++++++++.|+|.+.|+.+-....  ++||+|.
T Consensus        64 v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~--~qfdlvl  141 (227)
T KOG1271|consen   64 VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLS--GQFDLVL  141 (227)
T ss_pred             hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccc--cceeEEe
Confidence            34444 99999999999999999987544 9999999 599999999999999999999999998753333  7888887


Q ss_pred             Eec----ccccc-ccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEW----MGYCL-FYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~----~~~~l-~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      --.    +.-+. .....+...+..+.++|+|||+++..+|+
T Consensus       142 DKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN  183 (227)
T KOG1271|consen  142 DKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN  183 (227)
T ss_pred             ecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence            522    21111 11223345677788999999999999998

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.21  E-value=1.2e-10  Score=117.82  Aligned_cols=116  Identities=14%  Similarity=0.141  Sum_probs=92.2

Q ss_pred             HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         68 NSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        68 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      +.+.....+.++.+|||||||+|.++..++++ +..+++++|..++++.|+++++..++.++++++.+|+.+..++    
T Consensus       139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~----  214 (306)
T TIGR02716       139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP----  214 (306)
T ss_pred             HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC----
Confidence            34545556677889999999999999988887 4568999998789999999999999999999999999765444    


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      .+|+|+...+.|.. .+.....+++.+.+.|+|||+++....
T Consensus       215 ~~D~v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       215 EADAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             CCCEEEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            36998776554433 233456789999999999999985543

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK05785 hypothetical protein; Provisional

Probab=99.21  E-value=5e-11  Score=115.15  Aligned_cols=90  Identities=18%  Similarity=0.212  Sum_probs=73.4

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      ++.+|||||||||.++..+++....+|+|+|+| +|++.|++.         ..++++|++++++++  ++||+|++...
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d--~sfD~v~~~~~  119 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRD--KSFDVVMSSFA  119 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCC--CCEEEEEecCh
Confidence            478999999999999999988733499999999 699998863         135788998877766  89999999765


Q ss_pred             ccccccchhHHHHHHHHhcccCcCe
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATNG  181 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~LkpgG  181 (519)
                      .+   +-..++.+++++.|+|||.+
T Consensus       120 l~---~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        120 LH---ASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             hh---ccCCHHHHHHHHHHHhcCce
Confidence            33   34567888999999999954

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.21  E-value=9.8e-11  Score=113.71  Aligned_cols=107  Identities=29%  Similarity=0.325  Sum_probs=84.1

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ....++.+|||||||+|.++..+++.+. +|+++|++ .+++.|++++...+.  .++++.+++.++... ..++||+|+
T Consensus        44 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~fD~Ii  119 (233)
T PRK05134         44 AGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAE-HPGQFDVVT  119 (233)
T ss_pred             ccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhh-cCCCccEEE
Confidence            3456788999999999999999988865 89999999 699999998877665  378888888765311 127899999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +..+.+   +......++..+.++|+|||.++...
T Consensus       120 ~~~~l~---~~~~~~~~l~~~~~~L~~gG~l~v~~  151 (233)
T PRK05134        120 CMEMLE---HVPDPASFVRACAKLVKPGGLVFFST  151 (233)
T ss_pred             EhhHhh---ccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence            866533   33456778899999999999998654

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.20  E-value=1.5e-10  Score=111.65  Aligned_cols=139  Identities=27%  Similarity=0.327  Sum_probs=100.6

Q ss_pred             hhhhccccccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHH
Q psy14674         42 YYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIV  120 (519)
Q Consensus        42 ~yf~~y~~~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~  120 (519)
                      .|.+.++.+.....+  +..+.....+.+.......++.+|||+|||+|.++..+++.+. +++++|++ .+++.+++++
T Consensus        11 ~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~   87 (224)
T TIGR01983        11 EWWDPNGKFKPLHKM--NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHA   87 (224)
T ss_pred             HhcCCCCcHHHHHHh--hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHH
Confidence            355556655444443  3445555555564432234688999999999999998888766 79999999 6999999998


Q ss_pred             HHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        121 DKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       121 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      ..++.. ++++..+++.++.... .++||+|++..+.+   +......++..+.+.|+|||.++....
T Consensus        88 ~~~~~~-~~~~~~~d~~~~~~~~-~~~~D~i~~~~~l~---~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983        88 KKDPLL-KIEYRCTSVEDLAEKG-AKSFDVVTCMEVLE---HVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             HHcCCC-ceEEEeCCHHHhhcCC-CCCccEEEehhHHH---hCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            877653 4888888887764331 26899999866533   334567788999999999999886543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.20  E-value=1.6e-10  Score=109.30  Aligned_cols=110  Identities=25%  Similarity=0.305  Sum_probs=83.0

Q ss_pred             HhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         71 YHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        71 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      .......++.+|||+|||+|.++..+++. +..+|+|+|++ ++++.|+++++.+++. +++++.+|+.+. ++.....+
T Consensus        33 ~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~-~~~~~~~~  110 (196)
T PRK07402         33 ISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPEC-LAQLAPAP  110 (196)
T ss_pred             HHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHH-HhhCCCCC
Confidence            33445678899999999999999988865 45699999999 6999999999998885 599999998652 11101345


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |.++...       ...+..++..+.++|+|||.++.....
T Consensus       111 d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402        111 DRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             CEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence            7665432       123567788888999999999876554

>PLN03075 nicotianamine synthase; Provisional

Probab=99.20  E-value=1.9e-10  Score=113.83  Aligned_cols=108  Identities=18%  Similarity=0.176  Sum_probs=84.3

Q ss_pred             CCCEEEEECCcccHH-HHHHH-Hc-CCCEEEEEech-HHHHHHHHHHHH-CCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         78 KGKIVLDIGCGTGIL-SMFAA-KS-GAARVIGIECS-NIVEYAKEIVDK-NNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        78 ~~~~VLDiGcGtG~l-s~~la-~~-g~~~V~gvD~s-~~~~~A~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ++++|+|||||.|.+ ++.++ ++ +..+++|+|.+ ++++.|++.++. .++.++++|..+|+.+.....  ++||+|+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l--~~FDlVF  200 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESL--KEYDVVF  200 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccccc--CCcCEEE
Confidence            789999999997744 44443 33 56689999999 699999999964 889899999999998753222  6899999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +..+ ++.. ......+++.+.+.|+|||.++...+.
T Consensus       201 ~~AL-i~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~  235 (296)
T PLN03075        201 LAAL-VGMD-KEEKVKVIEHLGKHMAPGALLMLRSAH  235 (296)
T ss_pred             Eecc-cccc-cccHHHHHHHHHHhcCCCcEEEEeccc
Confidence            9843 2222 145788899999999999999977654

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.20  E-value=5.3e-11  Score=132.95  Aligned_cols=112  Identities=20%  Similarity=0.184  Sum_probs=90.2

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCC-CcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS-DVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      .++++|||+|||+|.+++.+++.|+++|++||+| .+++.|+++++.|++. ++++++++|+.++.... .++||+||++
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~-~~~fDlIilD  615 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA-REQFDLIFID  615 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-CCCcCEEEEC
Confidence            4688999999999999999999998899999999 6999999999999997 68999999987642111 1689999998


Q ss_pred             cccccc--------ccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        155 WMGYCL--------FYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       155 ~~~~~l--------~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.....        ........++..+.++|+|||.++.+.+.
T Consensus       616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~  658 (702)
T PRK11783        616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK  658 (702)
T ss_pred             CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            753211        11234566777888999999999877655

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.20  E-value=1.6e-10  Score=110.65  Aligned_cols=104  Identities=22%  Similarity=0.185  Sum_probs=80.7

Q ss_pred             HhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674         71 YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD  149 (519)
Q Consensus        71 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D  149 (519)
                      +....+.++.+|||+|||+|.++..+++.+ .+|+++|.+ ++++.|+++++.+++.+ ++++.+|..+...+.  ++||
T Consensus        71 ~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~--~~fD  146 (212)
T PRK00312         71 TELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPAY--APFD  146 (212)
T ss_pred             HHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCcC--CCcC
Confidence            334566788999999999999999888875 489999999 69999999999988865 999999986532222  6899


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +|++.....         .+...+.+.|+|||.++...
T Consensus       147 ~I~~~~~~~---------~~~~~l~~~L~~gG~lv~~~  175 (212)
T PRK00312        147 RILVTAAAP---------EIPRALLEQLKEGGILVAPV  175 (212)
T ss_pred             EEEEccCch---------hhhHHHHHhcCCCcEEEEEE
Confidence            999865321         22344568999999988543

>PRK04266 fibrillarin; Provisional

Probab=99.20  E-value=1.2e-10  Score=112.12  Aligned_cols=103  Identities=17%  Similarity=0.234  Sum_probs=78.5

Q ss_pred             cCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe----ecCCCCc
Q psy14674         73 NKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV----ELPFGIQ  146 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~  146 (519)
                      ...+.++.+|||+|||+|.++..+++. +..+|+|+|++ +|++.+.++++..   .++.++.+|+.+.    .++   +
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~---~  140 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVV---E  140 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhcc---c
Confidence            356788999999999999999999886 44589999999 6999887776653   3488999998652    122   5


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +||+|+++..     .......++..+.++|||||.++..
T Consensus       141 ~~D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        141 KVDVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             cCCEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            6999997632     1112344678889999999998864

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.20  E-value=1.4e-10  Score=110.81  Aligned_cols=104  Identities=22%  Similarity=0.156  Sum_probs=80.0

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC--------------CCcEEEEEceeeEeec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL--------------SDVVTILKGKVEEVEL  141 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~--------------~~~i~~~~~d~~~~~~  141 (519)
                      .++.+|||+|||.|..+.++|++|. +|+|+|+| .+++.|.+.   +++              ..+|+++++|+.++..
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  108 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA  108 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence            4678999999999999999999988 89999999 588875432   222              2358999999988653


Q ss_pred             CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      .. .++||.|+...+.+++ .......++..+.++|||||.++..
T Consensus       109 ~~-~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       109 AD-LGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             cc-CCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            21 1579999886655555 3456778899999999999976543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK14968 putative methyltransferase; Provisional

Probab=99.19  E-value=1.5e-10  Score=108.24  Aligned_cols=107  Identities=27%  Similarity=0.383  Sum_probs=83.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCc-EEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDV-VTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      .++++|||+|||+|.++..+++.+ .+|+|+|.| ++++.+++++..+++.++ +.++++|+.+. ++.  ++||+|+++
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~--~~~d~vi~n   97 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRG--DKFDVILFN   97 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccc--cCceEEEEC
Confidence            577899999999999999999885 599999999 699999999998888655 88999988763 333  589999987


Q ss_pred             cccccc------------------ccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        155 WMGYCL------------------FYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l------------------~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ......                  .....+..+++++.++|||||.++...
T Consensus        98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~  148 (188)
T PRK14968         98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ  148 (188)
T ss_pred             CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            642210                  011235667889999999999887543

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=6.8e-11  Score=110.25  Aligned_cols=105  Identities=23%  Similarity=0.213  Sum_probs=83.9

Q ss_pred             HhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674         71 YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD  149 (519)
Q Consensus        71 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D  149 (519)
                      .+...+.++.+|||||||+|+.+..+|+... +|+++|.. ++++.|+++++..|+.+ |.++++|...--.+.  .+||
T Consensus        65 ~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~--aPyD  140 (209)
T COG2518          65 LQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEE--APYD  140 (209)
T ss_pred             HHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCC--CCcC
Confidence            3446788999999999999999999999844 99999999 69999999999999987 999999988743333  7899


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      .|+......     ...+.+    .+.||+||+++.-..
T Consensus       141 ~I~Vtaaa~-----~vP~~L----l~QL~~gGrlv~PvG  170 (209)
T COG2518         141 RIIVTAAAP-----EVPEAL----LDQLKPGGRLVIPVG  170 (209)
T ss_pred             EEEEeeccC-----CCCHHH----HHhcccCCEEEEEEc
Confidence            998865422     123333    368899999984443

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=1.1e-10  Score=116.13  Aligned_cols=129  Identities=25%  Similarity=0.308  Sum_probs=91.8

Q ss_pred             HhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEE
Q psy14674         55 EMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL  132 (519)
Q Consensus        55 ~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~  132 (519)
                      ..+.....++.+...++........ +|||+|||||.+++.++... ...|+|+|+| .+++.|++|+..+++ .++.++
T Consensus        88 ~vliPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~  165 (280)
T COG2890          88 GVLIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVV  165 (280)
T ss_pred             CceecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEE
Confidence            3344444556555554321111122 89999999999999999884 4599999999 699999999999999 557777


Q ss_pred             EceeeEeecCCCCceeeEEEEeccc--cc---c-----ccc------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        133 KGKVEEVELPFGIQKVDIIISEWMG--YC---L-----FYE------------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       133 ~~d~~~~~~~~~~~~~D~Ivs~~~~--~~---l-----~~e------------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++|+.+ .+.   ++||+||||+..  .-   .     .+|            .....++..+.+.|+|||.++.....
T Consensus       166 ~~dlf~-~~~---~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~  240 (280)
T COG2890         166 QSDLFE-PLR---GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL  240 (280)
T ss_pred             eeeccc-ccC---CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence            776654 344   689999998741  00   0     011            24567788888999999999877764

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.18  E-value=1.3e-10  Score=112.90  Aligned_cols=101  Identities=30%  Similarity=0.364  Sum_probs=82.2

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      .++.+|||+|||+|.++..+++.+ ..+++++|++ ++++.+++...     .++.++.+|+.+.+++.  ++||+|++.
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~--~~fD~vi~~  105 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLED--SSFDLIVSN  105 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCC--CceeEEEEh
Confidence            456799999999999999888874 4579999999 68888887654     25889999999876655  789999998


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      .+.++.   .....++..+.++|+|||.++...
T Consensus       106 ~~l~~~---~~~~~~l~~~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       106 LALQWC---DDLSQALSELARVLKPGGLLAFST  135 (240)
T ss_pred             hhhhhc---cCHHHHHHHHHHHcCCCcEEEEEe
Confidence            774443   456778999999999999998654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.18  E-value=9.1e-11  Score=126.08  Aligned_cols=137  Identities=21%  Similarity=0.237  Sum_probs=98.4

Q ss_pred             ccccHHhhhcHHHHHHHHHHHHhcCC------------------------CCCCCEEEEECCcccHHHHHHHHc-CCCEE
Q psy14674         50 FGIHEEMLKDEVRTMTYRNSMYHNKH------------------------LFKGKIVLDIGCGTGILSMFAAKS-GAARV  104 (519)
Q Consensus        50 ~~~~~~~l~d~~r~~~y~~ai~~~~~------------------------~~~~~~VLDiGcGtG~ls~~la~~-g~~~V  104 (519)
                      +......|-.+..++...+.++....                        ..++.+|||+|||+|.+++.+++. +..+|
T Consensus        86 f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v  165 (506)
T PRK01544         86 FIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANV  165 (506)
T ss_pred             EEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeE
Confidence            34455556666667766665543211                        113568999999999999988765 55699


Q ss_pred             EEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccc-----------cccc---------
Q psy14674        105 IGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYC-----------LFYE---------  163 (519)
Q Consensus       105 ~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~-----------l~~e---------  163 (519)
                      +|+|+| .+++.|+++++.+++.++++++++|+.+. ++.  ++||+|+|++....           ..+|         
T Consensus       166 ~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~--~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~  242 (506)
T PRK01544        166 IATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEK--QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEE  242 (506)
T ss_pred             EEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcC--CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCc
Confidence            999999 69999999999999888899999998652 333  68999999763111           0111         


Q ss_pred             ---hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        164 ---SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       164 ---~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                         ..+..++..+.++|+|||.++.+...
T Consensus       243 dGl~~~~~il~~a~~~L~~gG~l~lEig~  271 (506)
T PRK01544        243 DGLQAYFIIAENAKQFLKPNGKIILEIGF  271 (506)
T ss_pred             cHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence               22445777888999999999876543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.18  E-value=1.2e-10  Score=125.10  Aligned_cols=110  Identities=24%  Similarity=0.385  Sum_probs=85.6

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCcee
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKV  148 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~  148 (519)
                      ......++.+|||||||+|.++..+++.+ .+|+|+|++ +|++.+++.   ++...+++++++|+...  +++.  ++|
T Consensus        31 ~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~--~~f  104 (475)
T PLN02336         31 SLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISD--GSV  104 (475)
T ss_pred             hhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCC--CCE
Confidence            33444567899999999999999999885 599999999 698877653   23334689999999643  4444  789


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      |+|++..+.+++.. ..+..+++.+.++|||||.++....
T Consensus       105 D~I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~  143 (475)
T PLN02336        105 DLIFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRES  143 (475)
T ss_pred             EEEehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEec
Confidence            99999888666644 3467889999999999999987543

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.17  E-value=1.2e-10  Score=110.59  Aligned_cols=93  Identities=17%  Similarity=0.187  Sum_probs=74.2

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      .+.++.+|||||||+|.++..+++. +..+++|+|+| +|++.|+++..      ++.++++|+.+ +.+.  ++||+|+
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~~~--~sfD~V~  110 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PFKD--NFFDLVL  110 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CCCC--CCEEEEE
Confidence            3457789999999999999988876 55699999999 69999987642      26788888877 4554  7999999


Q ss_pred             EeccccccccchhHHHHHHHHhccc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWL  177 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~L  177 (519)
                      +..+.+++. ...+..+++++.|++
T Consensus       111 ~~~vL~hl~-p~~~~~~l~el~r~~  134 (204)
T TIGR03587       111 TKGVLIHIN-PDNLPTAYRELYRCS  134 (204)
T ss_pred             ECChhhhCC-HHHHHHHHHHHHhhc
Confidence            988766664 346777888888887

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.16  E-value=1.1e-10  Score=113.22  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=87.6

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCC--CCce
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPF--GIQK  147 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~--~~~~  147 (519)
                      ...++++|||+|||+|..++.+++.  +..+|+++|.+ ++++.|+++++.+|+.++|+++.+|+.+.  .+..  ..++
T Consensus        65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~  144 (234)
T PLN02781         65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE  144 (234)
T ss_pred             HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence            4457889999999999988877765  46799999999 69999999999999999999999999774  1110  0268


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASL  190 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~  190 (519)
                      ||+|+.+..      ......++..+.++|+|||.++.+..-|
T Consensus       145 fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~  181 (234)
T PLN02781        145 FDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLW  181 (234)
T ss_pred             CCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence            999988643      1334566777789999999999887663

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.16  E-value=2.3e-10  Score=107.93  Aligned_cols=107  Identities=14%  Similarity=0.158  Sum_probs=81.4

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||+|||+|.+++.++..++.+|+++|.+ ++++.|+++++.+++. +++++++|+.+. ++...++||+|++++
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~-l~~~~~~fDlV~~DP  129 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSF-LAQPGTPHNVVFVDP  129 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHH-HhhcCCCceEEEECC
Confidence            4678999999999999997655667899999999 6999999999999875 599999998764 221115799999998


Q ss_pred             cccccccchhHHHHHHHHh--cccCcCeEEEccCCc
Q psy14674        156 MGYCLFYESMLDTVLYARD--KWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~--r~LkpgG~lip~~~~  189 (519)
                      ...    .+..+.++..+.  .+|+|+|+++.+...
T Consensus       130 Py~----~g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        130 PFR----KGLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             CCC----CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            722    233444455443  458899988877554

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.16  E-value=1.2e-10  Score=115.06  Aligned_cols=111  Identities=18%  Similarity=0.230  Sum_probs=82.9

Q ss_pred             CCCCCEEEEECCcccH----HHHHHHHcC------CCEEEEEech-HHHHHHHHHHH----HCC----------------
Q psy14674         76 LFKGKIVLDIGCGTGI----LSMFAAKSG------AARVIGIECS-NIVEYAKEIVD----KNN----------------  124 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~----ls~~la~~g------~~~V~gvD~s-~~~~~A~~~~~----~~~----------------  124 (519)
                      ..++.+|||+|||||.    +++.+++.+      ..+|+|+|+| .|++.|++.+-    ..+                
T Consensus        97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~  176 (264)
T smart00138       97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK  176 (264)
T ss_pred             CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence            3456799999999995    566666642      2489999999 69999998531    011                


Q ss_pred             ------CCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        125 ------LSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       125 ------~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                            +.++|+|.++|+.+.+.+.  ++||+|+|..+.+++.. .....++..+.+.|+|||.++.....
T Consensus       177 ~~v~~~ir~~V~F~~~dl~~~~~~~--~~fD~I~crnvl~yf~~-~~~~~~l~~l~~~L~pGG~L~lg~~E  244 (264)
T smart00138      177 YRVKPELKERVRFAKHNLLAESPPL--GDFDLIFCRNVLIYFDE-PTQRKLLNRFAEALKPGGYLFLGHSE  244 (264)
T ss_pred             EEEChHHhCcCEEeeccCCCCCCcc--CCCCEEEechhHHhCCH-HHHHHHHHHHHHHhCCCeEEEEECcc
Confidence                  2246899999998865544  79999999766555533 45678899999999999999976555

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=3.6e-10  Score=107.69  Aligned_cols=110  Identities=23%  Similarity=0.254  Sum_probs=94.0

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI  145 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  145 (519)
                      .|.....+.+|.+|||.|.|+|.++..+|++  +.++|+..|+. +.++.|++|++..++.+++++..+|+.+...+   
T Consensus        85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~---  161 (256)
T COG2519          85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE---  161 (256)
T ss_pred             HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc---
Confidence            3445578899999999999999999999986  45799999999 69999999999999999999999999987655   


Q ss_pred             ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.||+|+.+..        ....++..+.+.|+|||.++.-..+
T Consensus       162 ~~vDav~LDmp--------~PW~~le~~~~~Lkpgg~~~~y~P~  197 (256)
T COG2519         162 EDVDAVFLDLP--------DPWNVLEHVSDALKPGGVVVVYSPT  197 (256)
T ss_pred             cccCEEEEcCC--------ChHHHHHHHHHHhCCCcEEEEEcCC
Confidence            58999987653        4567788889999999998855444

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.14  E-value=5.4e-10  Score=109.58  Aligned_cols=106  Identities=26%  Similarity=0.304  Sum_probs=83.0

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .+.+|||+|||+|.++..+++. +..+++|+|++ .+++.|++++..+++. +++++++|+.+ .++.  ++||+|++++
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~~~--~~fD~Vi~np  162 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE-PLPG--GKFDLIVSNP  162 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc-cCcC--CceeEEEECC
Confidence            4569999999999999998886 45599999999 6999999999998886 59999999976 3443  7899999976


Q ss_pred             cccccc-----------cc------------hhHHHHHHHHhcccCcCeEEEccC
Q psy14674        156 MGYCLF-----------YE------------SMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       156 ~~~~l~-----------~e------------~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ......           ++            .....++..+.++|+|||.++...
T Consensus       163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~  217 (251)
T TIGR03534       163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI  217 (251)
T ss_pred             CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            522110           00            112467788899999999998654

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK06202 hypothetical protein; Provisional

Probab=99.13  E-value=2.3e-10  Score=111.06  Aligned_cols=101  Identities=22%  Similarity=0.230  Sum_probs=75.4

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc----C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS----G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD  149 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~----g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D  149 (519)
                      ..++.+|||||||+|.++..+++.    | ..+|+|+|+| +|++.|+++...++    +++...+...++.+.  ++||
T Consensus        58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~--~~fD  131 (232)
T PRK06202         58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEG--ERFD  131 (232)
T ss_pred             CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccC--CCcc
Confidence            356789999999999988887752    3 2489999999 69999988765433    566666666554443  7999


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +|+++.+.+++..+ .+..++.++.++++ ++.++
T Consensus       132 ~V~~~~~lhh~~d~-~~~~~l~~~~r~~~-~~~~i  164 (232)
T PRK06202        132 VVTSNHFLHHLDDA-EVVRLLADSAALAR-RLVLH  164 (232)
T ss_pred             EEEECCeeecCChH-HHHHHHHHHHHhcC-eeEEE
Confidence            99998877766543 35678899999988 44444

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.13  E-value=4.6e-10  Score=107.59  Aligned_cols=103  Identities=24%  Similarity=0.232  Sum_probs=79.9

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC--------------CCcEEEEEceeeEee
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL--------------SDVVTILKGKVEEVE  140 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~--------------~~~i~~~~~d~~~~~  140 (519)
                      ..++.+|||+|||.|..+.++|++|. +|+|||+| .+++.+.+   ++++              ..+|++.++|+.++.
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~  110 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT  110 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence            35678999999999999999999988 89999999 57877642   2332              246899999998864


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ... .+.||.|+...+.+++. .+....++..+.++|+|||.++
T Consensus       111 ~~~-~~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~  152 (218)
T PRK13255        111 AAD-LADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGL  152 (218)
T ss_pred             ccc-CCCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEE
Confidence            321 25799999877655553 4567888999999999998643

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.12  E-value=3.2e-10  Score=112.90  Aligned_cols=125  Identities=22%  Similarity=0.227  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceee
Q psy14674         60 EVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVE  137 (519)
Q Consensus        60 ~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~  137 (519)
                      ...++.+.+.++......++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|+++++ ++...++.++.+|+.
T Consensus        90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~  168 (275)
T PRK09328         90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWF  168 (275)
T ss_pred             CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEcccc
Confidence            3345555555554444567789999999999999998887 35699999999 69999999988 444557999999986


Q ss_pred             EeecCCCCceeeEEEEecccccc------c-----------------cchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        138 EVELPFGIQKVDIIISEWMGYCL------F-----------------YESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       138 ~~~~~~~~~~~D~Ivs~~~~~~l------~-----------------~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      +. ++.  ++||+|++++.....      .                 .......++..+.++|+|||.++....
T Consensus       169 ~~-~~~--~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g  239 (275)
T PRK09328        169 EP-LPG--GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG  239 (275)
T ss_pred             Cc-CCC--CceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence            53 232  689999997642110      0                 112345677788899999999987543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.11  E-value=1.7e-10  Score=109.47  Aligned_cols=105  Identities=24%  Similarity=0.264  Sum_probs=76.4

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI  145 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  145 (519)
                      .+++...+.+|.+|||||||+|+.+..+++. | ..+|++||.. ++++.|+++++..++. +|+++++|........  
T Consensus        63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~~--  139 (209)
T PF01135_consen   63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPEE--  139 (209)
T ss_dssp             HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGGG--
T ss_pred             HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccccC--
Confidence            3445567899999999999999999999887 4 3379999999 6999999999998886 4999999986532222  


Q ss_pred             ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .+||.|++....   .  .....    +.+.|++||+++.
T Consensus       140 apfD~I~v~~a~---~--~ip~~----l~~qL~~gGrLV~  170 (209)
T PF01135_consen  140 APFDRIIVTAAV---P--EIPEA----LLEQLKPGGRLVA  170 (209)
T ss_dssp             -SEEEEEESSBB---S--S--HH----HHHTEEEEEEEEE
T ss_pred             CCcCEEEEeecc---c--hHHHH----HHHhcCCCcEEEE
Confidence            689999986542   1  22233    3468999999984

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.11  E-value=8.3e-10  Score=108.31  Aligned_cols=108  Identities=19%  Similarity=0.230  Sum_probs=79.4

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .+.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|+++++.++    ++++++|+.+.......++||+|++++
T Consensus        86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NP  161 (251)
T TIGR03704        86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANA  161 (251)
T ss_pred             CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECC
Confidence            3458999999999999988865 44589999999 69999999998876    378889987531110115799999987


Q ss_pred             ccccc------c-----c------------chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCL------F-----Y------------ESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l------~-----~------------e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ...-.      .     +            ...+..++....++|+|||.++.....
T Consensus       162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~  218 (251)
T TIGR03704       162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE  218 (251)
T ss_pred             CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            52210      0     1            112457788888999999999866543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PHA03412 putative methyltransferase; Provisional

Probab=99.11  E-value=2.5e-10  Score=108.78  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=78.6

Q ss_pred             CCCEEEEECCcccHHHHHHHHc----CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS----GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~----g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      .+.+|||+|||+|.+++.+++.    +..+|+|+|++ .+++.|+++..      ++.++.+|+....+.   ++||+||
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~---~~FDlII  119 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFD---TLFDMAI  119 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccccc---CCccEEE
Confidence            3679999999999999988864    34589999999 69999997753      278999999865543   6899999


Q ss_pred             Eeccccccccc---------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYE---------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e---------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +++...-+...         .....++....+++++|+.++|...-
T Consensus       120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~  165 (241)
T PHA03412        120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSA  165 (241)
T ss_pred             ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccc
Confidence            99864322111         22455777777899999998888755

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.11  E-value=1.1e-10  Score=107.76  Aligned_cols=106  Identities=21%  Similarity=0.240  Sum_probs=84.7

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD  149 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D  149 (519)
                      ....+....+|.|+|||+|..+..++++ +...++|+|.| +|++.|+++..+      .+|..+|+.++..+   .+.|
T Consensus        24 a~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~------~~f~~aDl~~w~p~---~~~d   94 (257)
T COG4106          24 ARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD------ATFEEADLRTWKPE---QPTD   94 (257)
T ss_pred             hhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCC------CceecccHhhcCCC---Cccc
Confidence            3456677789999999999999988887 66799999999 799999876432      79999999998655   7899


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +++++.+.+.+..   -..++..+-..|.|||.+......
T Consensus        95 llfaNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPd  131 (257)
T COG4106          95 LLFANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPD  131 (257)
T ss_pred             hhhhhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCC
Confidence            9999998665543   344566666889999999855544

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.10  E-value=3.4e-10  Score=108.02  Aligned_cols=98  Identities=21%  Similarity=0.275  Sum_probs=73.3

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCCC
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFGI  145 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~  145 (519)
                      +.++.+|||||||+|.++..+++. + ..+|+|||+++|.          +..+ ++++++|+.+..        ++.  
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~~~-v~~i~~D~~~~~~~~~i~~~~~~--  115 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PIVG-VDFLQGDFRDELVLKALLERVGD--  115 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CCCC-cEEEecCCCChHHHHHHHHHhCC--
Confidence            567889999999999999988886 3 3589999999842          2233 899999998753        333  


Q ss_pred             ceeeEEEEeccccccccc--------hhHHHHHHHHhcccCcCeEEEcc
Q psy14674        146 QKVDIIISEWMGYCLFYE--------SMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e--------~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ++||+|+|+...+.....        .....++..+.++|||||.++..
T Consensus       116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            789999997653332211        01246788899999999999864

>PRK04457 spermidine synthase; Provisional

Probab=99.10  E-value=3.7e-10  Score=111.46  Aligned_cols=110  Identities=14%  Similarity=0.202  Sum_probs=83.7

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      .++++|||||||+|.++..+++. +..+|++||++ ++++.|++.+...+..++++++.+|+.++- ....++||+|+++
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l-~~~~~~yD~I~~D  143 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI-AVHRHSTDVILVD  143 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH-HhCCCCCCEEEEe
Confidence            45689999999999999988765 56699999999 699999998876665568999999987641 1112689999997


Q ss_pred             ccccc-cccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        155 WMGYC-LFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       155 ~~~~~-l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ..... ....-....+++.+.+.|+|||+++.+.
T Consensus       144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~  177 (262)
T PRK04457        144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL  177 (262)
T ss_pred             CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence            64221 1111123677888999999999999754

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.10  E-value=5.5e-10  Score=114.45  Aligned_cols=110  Identities=23%  Similarity=0.243  Sum_probs=85.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIII  152 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Iv  152 (519)
                      ..+..+||||||+|..+..+|+. +...++|+|++ ++++.|.+++..+++.+ +.++++|+..+  .++.  +++|.|+
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~--~s~D~I~  197 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPS--NSVEKIF  197 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCC--CceeEEE
Confidence            45679999999999999988876 55699999999 79999999999999876 99999999765  3444  8999998


Q ss_pred             Eeccccccccc---hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYE---SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e---~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.......-..   -....++.++.|+|+|||.+...+-.
T Consensus       198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~  237 (390)
T PRK14121        198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS  237 (390)
T ss_pred             EeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence            86532211100   01257899999999999988865433

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.09  E-value=7.8e-10  Score=103.72  Aligned_cols=109  Identities=17%  Similarity=0.127  Sum_probs=83.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-e-cCCCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-E-LPFGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~~~~D~Ivs  153 (519)
                      ..+.+|||++||+|.+++.++.+|+++|++||.+ .+++.++++++.+++.++++++.+|+.+. . +......+|+|+.
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            4688999999999999999999999999999999 69999999999999987899999999653 1 2111124899988


Q ss_pred             eccccccccchhHHHHHHHH--hcccCcCeEEEccCCc
Q psy14674        154 EWMGYCLFYESMLDTVLYAR--DKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~--~r~LkpgG~lip~~~~  189 (519)
                      ++....    .....++..+  ..+|+++|+++.+...
T Consensus       128 DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       128 DPPFFN----GALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             CcCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            876332    2233333333  3589999999977655

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.08  E-value=2.7e-10  Score=113.34  Aligned_cols=91  Identities=22%  Similarity=0.341  Sum_probs=70.6

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-C---CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-G---AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g---~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      .++.+|||+|||+|.++..+++. +   ...|+|+|+| +|++.|+++.      .++.+..+|+.++++++  ++||+|
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~--~sfD~I  155 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFAD--QSLDAI  155 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcC--CceeEE
Confidence            35578999999999998888765 2   2379999999 6999987653      23789999998877665  799999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ++...      .    ..+.++.|+|||||.++.
T Consensus       156 ~~~~~------~----~~~~e~~rvLkpgG~li~  179 (272)
T PRK11088        156 IRIYA------P----CKAEELARVVKPGGIVIT  179 (272)
T ss_pred             EEecC------C----CCHHHHHhhccCCCEEEE
Confidence            98432      1    124667899999999984

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.08  E-value=8.7e-10  Score=106.67  Aligned_cols=102  Identities=24%  Similarity=0.297  Sum_probs=79.6

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..++.+|||||||+|.++..+++.+. +|+|+|+| +|++.|+++....+..+++.+..+|+..   ..  ++||+|++.
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~--~~fD~v~~~  134 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LL--GRFDTVVCL  134 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---cc--CCcCEEEEc
Confidence            45678999999999999999998876 79999999 6999999999888876779999998532   22  789999986


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      .+.+++. ...+..++..+.+.+++++++.
T Consensus       135 ~~l~~~~-~~~~~~~l~~l~~~~~~~~~i~  163 (230)
T PRK07580        135 DVLIHYP-QEDAARMLAHLASLTRGSLIFT  163 (230)
T ss_pred             chhhcCC-HHHHHHHHHHHHhhcCCeEEEE
Confidence            6543332 2346677788877766555444

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1.1e-09  Score=99.76  Aligned_cols=76  Identities=33%  Similarity=0.479  Sum_probs=67.5

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      .....|++|+|+|||||.+++.++-.|+.+|+|+|++ ++++.+++|+.+  +..++.++.+|+.++.     .++|.++
T Consensus        41 ~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~-----~~~dtvi  113 (198)
T COG2263          41 RGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR-----GKFDTVI  113 (198)
T ss_pred             cCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC-----CccceEE
Confidence            5667899999999999999999999999999999999 799999999998  4456999999999764     5689998


Q ss_pred             Eecc
Q psy14674        153 SEWM  156 (519)
Q Consensus       153 s~~~  156 (519)
                      .|+.
T Consensus       114 mNPP  117 (198)
T COG2263         114 MNPP  117 (198)
T ss_pred             ECCC
Confidence            8874

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.08  E-value=8e-10  Score=109.36  Aligned_cols=113  Identities=13%  Similarity=0.054  Sum_probs=88.0

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ....+|.+|||+|||+|..+..+++.  +...|+|+|++ .+++.++++++.+++.+ ++++++|+..+....  ++||+
T Consensus        67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~--~~fD~  143 (264)
T TIGR00446        67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAAV--PKFDA  143 (264)
T ss_pred             hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhhc--cCCCE
Confidence            34568899999999999999988775  24589999999 69999999999999864 999999987654333  57999


Q ss_pred             EEEecccccc----c--------cch-------hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCL----F--------YES-------MLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l----~--------~e~-------~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+++..-...    .        .+.       ....++..+.++|||||+++-+.++
T Consensus       144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS  201 (264)
T ss_pred             EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            9987642211    0        111       2245788888999999999988888

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.08  E-value=1e-09  Score=110.90  Aligned_cols=103  Identities=27%  Similarity=0.249  Sum_probs=78.6

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      +...+.++.+|||||||+|.++..+++. + ..+|+|+|.+ ++++.|+++++.++.. ++.++++|+.+.....  ++|
T Consensus        74 ~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~~--~~f  150 (322)
T PRK13943         74 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPEF--APY  150 (322)
T ss_pred             HhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhccccc--CCc
Confidence            3345678899999999999999998876 3 2479999999 6999999999999885 5899999987643333  679


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      |+|++...   .      ..+...+.+.|+|||.++..
T Consensus       151 D~Ii~~~g---~------~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        151 DVIFVTVG---V------DEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             cEEEECCc---h------HHhHHHHHHhcCCCCEEEEE
Confidence            99998532   1      11223445789999987743

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.07  E-value=9.6e-10  Score=116.50  Aligned_cols=115  Identities=16%  Similarity=0.128  Sum_probs=89.1

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--CCCCcee
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--PFGIQKV  148 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~~~  148 (519)
                      ....+|.+|||+|||+|..+..+++.  +.++|+|+|++ .+++.++++++.+|+.+ |+++++|+.++..  +...++|
T Consensus       248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~f  326 (434)
T PRK14901        248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYF  326 (434)
T ss_pred             hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccC
Confidence            35577899999999999999988876  34599999999 69999999999999875 9999999987641  1112689


Q ss_pred             eEEEEecccccc----ccc---------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        149 DIIISEWMGYCL----FYE---------------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       149 D~Ivs~~~~~~l----~~e---------------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |.|+++..-...    .+.               .....++.++.++|||||.++-++|+
T Consensus       327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs  386 (434)
T PRK14901        327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT  386 (434)
T ss_pred             CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            999986542111    111               11356788889999999999988888

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.06  E-value=1.3e-09  Score=115.34  Aligned_cols=114  Identities=18%  Similarity=0.160  Sum_probs=87.4

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ....+|.+|||+|||+|..+..+++.+ ..+|+|+|++ .+++.++++++.+|+.  ++++++|+.++......++||.|
T Consensus       240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V  317 (427)
T PRK10901        240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRI  317 (427)
T ss_pred             cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEE
Confidence            355788999999999999999888874 3599999999 6999999999998875  68999999865311112679999


Q ss_pred             EEecccccc------------ccc-------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        152 ISEWMGYCL------------FYE-------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       152 vs~~~~~~l------------~~e-------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +++......            ..+       .....++..+.++|||||.++...|+
T Consensus       318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs  374 (427)
T PRK10901        318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS  374 (427)
T ss_pred             EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            986642211            011       11346788888999999999988887

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.06  E-value=1.3e-09  Score=115.96  Aligned_cols=112  Identities=17%  Similarity=0.219  Sum_probs=88.0

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ....+|.+|||+|||+|..+..+++.  +..+|+|+|+| .+++.++++++..|+. +|+++.+|+.++. +.  ++||+
T Consensus       246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~--~~fD~  321 (445)
T PRK14904        246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PE--EQPDA  321 (445)
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cC--CCCCE
Confidence            45568899999999999999888764  34599999999 6999999999999986 4999999998764 33  68999


Q ss_pred             EEEecc----ccccc--------cch-------hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWM----GYCLF--------YES-------MLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~----~~~l~--------~e~-------~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+++..    +..-.        .+.       ....++..+.++|||||+++.++|+
T Consensus       322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs  379 (445)
T PRK14904        322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS  379 (445)
T ss_pred             EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            997643    21110        011       1235788889999999999999988

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.05  E-value=9.8e-10  Score=101.32  Aligned_cols=109  Identities=23%  Similarity=0.275  Sum_probs=81.0

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      +.......++.+|||+|||+|.++..+++. ..+|+|+|++ .+++.+++++..   .++++++++|+.++.++.  .++
T Consensus         5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~--~~~   78 (169)
T smart00650        5 IVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPK--LQP   78 (169)
T ss_pred             HHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccc--cCC
Confidence            334455677889999999999999999988 4599999999 699999988754   246999999999886664  569


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      |.|+++...+.  ....+..++..  ..+.++|.++.+..
T Consensus        79 d~vi~n~Py~~--~~~~i~~~l~~--~~~~~~~~l~~q~e  114 (169)
T smart00650       79 YKVVGNLPYNI--STPILFKLLEE--PPAFRDAVLMVQKE  114 (169)
T ss_pred             CEEEECCCccc--HHHHHHHHHhc--CCCcceEEEEEEHH
Confidence            99999876332  12344444432  23457888876654

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.05  E-value=1.5e-09  Score=115.51  Aligned_cols=114  Identities=17%  Similarity=0.197  Sum_probs=88.5

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ....++.+|||+|||+|..+..+++.  +..+|+|+|++ .+++.++++++.+|+.+ ++++++|+.++.... .++||+
T Consensus       246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~-~~~fD~  323 (444)
T PRK14902        246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKF-AEKFDK  323 (444)
T ss_pred             hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchh-cccCCE
Confidence            34567899999999999999988875  35699999999 69999999999999876 999999998753111 168999


Q ss_pred             EEEeccccccc------------cch-------hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLF------------YES-------MLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~------------~e~-------~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+++.......            .+.       ....++..+.++|||||.++-+.++
T Consensus       324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs  381 (444)
T PRK14902        324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT  381 (444)
T ss_pred             EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence            99976422110            011       1245788888999999999988877

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.04  E-value=1.3e-09  Score=115.31  Aligned_cols=116  Identities=15%  Similarity=0.063  Sum_probs=86.9

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ....+|.+|||+|||+|..+..+++. +..+|+|+|++ ++++.++++++..|+..++++..+|..........++||.|
T Consensus       234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~V  313 (426)
T TIGR00563       234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRI  313 (426)
T ss_pred             hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEE
Confidence            35567899999999999999988875 54699999999 69999999999999874455577776544321112689999


Q ss_pred             EEeccccc--cc--cc---------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        152 ISEWMGYC--LF--YE---------------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       152 vs~~~~~~--l~--~e---------------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +++.....  ..  +.               .....++..+.++|||||.++.+.|+
T Consensus       314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs  370 (426)
T TIGR00563       314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS  370 (426)
T ss_pred             EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            98653111  11  11               11356788889999999999999988

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.04  E-value=1.2e-09  Score=115.39  Aligned_cols=113  Identities=17%  Similarity=0.173  Sum_probs=89.2

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCceee
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKVD  149 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~D  149 (519)
                      ....+|.+|||+|||+|..+..+++.  +..+|+|+|++ .+++.++++++..|+.+ ++++++|+.++. ...  ++||
T Consensus       233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~--~~fD  309 (431)
T PRK14903        233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQ--DTFD  309 (431)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhh--ccCC
Confidence            45678899999999999999888875  35699999999 69999999999999864 899999988754 222  6899


Q ss_pred             EEEEecccccccc----c---------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        150 IIISEWMGYCLFY----E---------------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       150 ~Ivs~~~~~~l~~----e---------------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .|+++........    .               .....++....++|||||.++.++|+
T Consensus       310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs  368 (431)
T PRK14903        310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT  368 (431)
T ss_pred             EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            9998654221111    0               12356688888999999999999998

>TIGR03438 probable methyltransferase

Probab=99.04  E-value=2e-09  Score=108.60  Aligned_cols=113  Identities=12%  Similarity=0.017  Sum_probs=79.7

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-ecCCCC--ceee
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSG--AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-ELPFGI--QKVD  149 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~--~~~D  149 (519)
                      +.++.+|||+|||+|..+..++++.  ..+|+|+|+| +|++.|++++......-++.++++|+.+. .++...  ....
T Consensus        61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~  140 (301)
T TIGR03438        61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL  140 (301)
T ss_pred             hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence            3467899999999999999888774  3589999999 69999998877543233478899999863 444210  1223


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++++....+++ .......+++.+++.|+|||.++.....
T Consensus       141 ~~~~gs~~~~~-~~~e~~~~L~~i~~~L~pgG~~lig~d~  179 (301)
T TIGR03438       141 GFFPGSTIGNF-TPEEAVAFLRRIRQLLGPGGGLLIGVDL  179 (301)
T ss_pred             EEEecccccCC-CHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence            33333332323 3445678899999999999999866544

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.03  E-value=8e-10  Score=113.54  Aligned_cols=113  Identities=27%  Similarity=0.261  Sum_probs=93.1

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCC-CcEEEEEceeeEe--ecCCCCceeeEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS-DVVTILKGKVEEV--ELPFGIQKVDIII  152 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~-~~i~~~~~d~~~~--~~~~~~~~~D~Iv  152 (519)
                      .+|++|||+-|-||..++.+|..||++|++||+| ..++.|++|++.||+. +++.++++|+.++  .......+||+||
T Consensus       216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi  295 (393)
T COG1092         216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII  295 (393)
T ss_pred             ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence            4499999999999999999999999999999999 6999999999999985 6689999999876  1221225899999


Q ss_pred             Eeccccccc------cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLF------YESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~------~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .++..+.-.      .......++..+.++|+|||.++..++.
T Consensus       296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~  338 (393)
T COG1092         296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS  338 (393)
T ss_pred             ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            988633221      1244566778888999999999988888

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.02  E-value=1.9e-09  Score=102.10  Aligned_cols=111  Identities=23%  Similarity=0.265  Sum_probs=87.3

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecC-C-CCcee
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELP-F-GIQKV  148 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~-~-~~~~~  148 (519)
                      ..+.++||+||||+|..++.+|++ + ..+|+.+|.+ +.++.|+++++..|+.++|+++.+|+.+.  .+. . ..++|
T Consensus        43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f  122 (205)
T PF01596_consen   43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF  122 (205)
T ss_dssp             HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred             hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence            356789999999999999999986 2 4699999999 69999999999999999999999999874  111 1 12589


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFI  192 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~  192 (519)
                      |+|+.+.-      .......+..+.++|+|||.++.+..-+.+
T Consensus       123 D~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G  160 (205)
T PF01596_consen  123 DFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRG  160 (205)
T ss_dssp             EEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGG
T ss_pred             eEEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccc
Confidence            99998753      233445566667899999999999887544

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.02  E-value=1.7e-09  Score=106.91  Aligned_cols=130  Identities=28%  Similarity=0.326  Sum_probs=91.6

Q ss_pred             cHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCC-CcEE
Q psy14674         53 HEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS-DVVT  130 (519)
Q Consensus        53 ~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~-~~i~  130 (519)
                      ....+-|...++.+....      .+|++|||+-|-||.+++.++..|+.+|++||.| .+++.|+++++.||+. ++++
T Consensus       104 ktGlFlDqR~nR~~v~~~------~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~  177 (286)
T PF10672_consen  104 KTGLFLDQRENRKWVRKY------AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHR  177 (286)
T ss_dssp             STSS-GGGHHHHHHHHHH------CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEE
T ss_pred             cceEcHHHHhhHHHHHHH------cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceE
Confidence            334455554555433322      4689999999999999999999999999999999 6999999999999986 6899


Q ss_pred             EEEceeeEe-e-cCCCCceeeEEEEeccccccc---cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        131 ILKGKVEEV-E-LPFGIQKVDIIISEWMGYCLF---YESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       131 ~~~~d~~~~-~-~~~~~~~~D~Ivs~~~~~~l~---~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++.+|+.+. . +. ..++||+||+++..+.-.   -+..+..++..+.++|+|||.++..+++
T Consensus       178 ~~~~Dvf~~l~~~~-~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs  240 (286)
T PF10672_consen  178 FIQGDVFKFLKRLK-KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS  240 (286)
T ss_dssp             EEES-HHHHHHHHH-HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred             EEecCHHHHHHHHh-cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            999998764 1 11 126899999988643221   1244566777788999999999987777

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PHA03411 putative methyltransferase; Provisional

Probab=99.02  E-value=7.6e-10  Score=107.89  Aligned_cols=98  Identities=18%  Similarity=0.179  Sum_probs=71.2

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .+.+|||+|||+|.++..+++. +..+|+|+|++ .|++.|+++..      +++++++|+.++...   ++||+|++++
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------~v~~v~~D~~e~~~~---~kFDlIIsNP  134 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------EAEWITSDVFEFESN---EKFDVVISNP  134 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------CCEEEECchhhhccc---CCCcEEEEcC
Confidence            4568999999999998888765 34699999999 69999987632      478999999876433   6899999988


Q ss_pred             cccccccchh-----------------HHHHHHHHhcccCcCeEEE
Q psy14674        156 MGYCLFYESM-----------------LDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       156 ~~~~l~~e~~-----------------l~~~l~~~~r~LkpgG~li  184 (519)
                      ..+.+..+..                 +..++.....+|+|+|.++
T Consensus       135 PF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~  180 (279)
T PHA03411        135 PFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG  180 (279)
T ss_pred             CccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEE
Confidence            7554332211                 2344555566777777544

>PRK00811 spermidine synthase; Provisional

Probab=99.01  E-value=1.5e-09  Score=108.46  Aligned_cols=112  Identities=18%  Similarity=0.146  Sum_probs=84.5

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCC--C--CCcEEEEEceeeEeecCCCCceeeE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNN--L--SDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~--~--~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      .++++||+||||+|.++..+++. +..+|++||++ ++++.|++.+...+  .  ..+++++.+|+..+-.. ..++||+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~yDv  153 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TENSFDV  153 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCCcccE
Confidence            45789999999999999988887 67799999999 69999999876432  2  45799999998775211 2278999


Q ss_pred             EEEeccccccccch-hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLFYES-MLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+++.......... ....+++.+.+.|+|||+++.....
T Consensus       154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~  193 (283)
T PRK00811        154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS  193 (283)
T ss_pred             EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            99976433211111 2356778889999999999976544

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.01  E-value=2.2e-09  Score=88.54  Aligned_cols=101  Identities=34%  Similarity=0.429  Sum_probs=79.2

Q ss_pred             EEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec-CCCCceeeEEEEecccc
Q psy14674         81 IVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL-PFGIQKVDIIISEWMGY  158 (519)
Q Consensus        81 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~D~Ivs~~~~~  158 (519)
                      +|||+|||+|.++..+++.+..+++++|.+ .+++.+++.....+ ..+++++.+|+.+... ..  +++|+|++..+.+
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~d~i~~~~~~~   77 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEAD--ESFDVIISDPPLH   77 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccC--CceEEEEEcccee
Confidence            489999999999998887667799999999 58888876444333 3468999999988653 22  7899999987744


Q ss_pred             ccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        159 CLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       159 ~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ..  ......+++.+.+.|+|||.++..
T Consensus        78 ~~--~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          78 HL--VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            32  456778888888999999999864

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.01  E-value=2e-09  Score=108.58  Aligned_cols=100  Identities=23%  Similarity=0.233  Sum_probs=74.6

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC----CCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL----SDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      .++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|+++.+..+.    ..++++..+|++++  .   ++||+|
T Consensus       143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~---~~fD~V  216 (315)
T PLN02585        143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--S---GKYDTV  216 (315)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--C---CCcCEE
Confidence            3578999999999999999999875 99999999 699999999876522    23478888887653  2   789999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +|..+.+++..+ ....++..+.+ +.+||+++
T Consensus       217 v~~~vL~H~p~~-~~~~ll~~l~~-l~~g~liI  247 (315)
T PLN02585        217 TCLDVLIHYPQD-KADGMIAHLAS-LAEKRLII  247 (315)
T ss_pred             EEcCEEEecCHH-HHHHHHHHHHh-hcCCEEEE
Confidence            987664444332 34455666654 56777766

>KOG2904|consensus

Probab=99.01  E-value=2.6e-09  Score=101.92  Aligned_cols=131  Identities=21%  Similarity=0.267  Sum_probs=93.1

Q ss_pred             cHHHHHHHHHHHHh---cCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEE
Q psy14674         59 DEVRTMTYRNSMYH---NKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILK  133 (519)
Q Consensus        59 d~~r~~~y~~ai~~---~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~  133 (519)
                      ....++.+.+++.+   +....++..+||+|||+|.+++.++.. +...|+|+|.| .++..|.+|++.+++.+++.+++
T Consensus       126 PRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~  205 (328)
T KOG2904|consen  126 PRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH  205 (328)
T ss_pred             cCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence            34456666665544   234456678999999999999977664 77799999999 59999999999999999999997


Q ss_pred             ceeeEe---ecCCCCceeeEEEEecccccc-----------ccc------------hhHHHHHHHHhcccCcCeEEEccC
Q psy14674        134 GKVEEV---ELPFGIQKVDIIISEWMGYCL-----------FYE------------SMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       134 ~d~~~~---~~~~~~~~~D~Ivs~~~~~~l-----------~~e------------~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      -+++.-   +.+...+++|+++|++..-.-           .+|            ..+-.+..-..|+|+|||.+..+.
T Consensus       206 ~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~  285 (328)
T KOG2904|consen  206 NIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL  285 (328)
T ss_pred             cccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence            655442   222223899999998742100           011            222344555679999999988776


Q ss_pred             Cc
Q psy14674        188 AS  189 (519)
Q Consensus       188 ~~  189 (519)
                      ..
T Consensus       286 ~~  287 (328)
T KOG2904|consen  286 VE  287 (328)
T ss_pred             cc
Confidence            64

>PLN02476 O-methyltransferase

Probab=98.99  E-value=2e-09  Score=105.94  Aligned_cols=109  Identities=17%  Similarity=0.182  Sum_probs=88.2

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ec--CCCCce
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--EL--PFGIQK  147 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~--~~~~~~  147 (519)
                      ...++++|||||+|+|..++.+|+.  ...+|+++|.+ +.++.|+++++++|+.++|+++.+|+.+.  .+  ....++
T Consensus       115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~  194 (278)
T PLN02476        115 QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS  194 (278)
T ss_pred             HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence            4457889999999999999999885  24589999999 69999999999999999999999998764  11  111258


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ||+|+.+.-      ......+++.+.++|+|||.++.+..-
T Consensus       195 FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNvL  230 (278)
T PLN02476        195 YDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNVL  230 (278)
T ss_pred             CCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence            999988653      234566677777999999999988766

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.97  E-value=8.6e-11  Score=109.08  Aligned_cols=108  Identities=25%  Similarity=0.322  Sum_probs=79.2

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ......+=+++||+|||||..+..+... +.+++|+|+| +|+++|.++-    +-+  ++.++++..+......++||+
T Consensus       119 ~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg----~YD--~L~~Aea~~Fl~~~~~er~DL  191 (287)
T COG4976         119 GKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG----LYD--TLYVAEAVLFLEDLTQERFDL  191 (287)
T ss_pred             HhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc----chH--HHHHHHHHHHhhhccCCcccc
Confidence            3344444579999999999999988777 6699999999 6999998752    211  344444443311112279999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |++.-+   +.+-+.++.++.....+|+|||.+.++.-+
T Consensus       192 i~AaDV---l~YlG~Le~~~~~aa~~L~~gGlfaFSvE~  227 (287)
T COG4976         192 IVAADV---LPYLGALEGLFAGAAGLLAPGGLFAFSVET  227 (287)
T ss_pred             hhhhhH---HHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence            988555   445567888898899999999999988877

>PTZ00146 fibrillarin; Provisional

Probab=98.96  E-value=3.4e-09  Score=104.56  Aligned_cols=103  Identities=16%  Similarity=0.175  Sum_probs=75.3

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe---ecCCCCce
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV---ELPFGIQK  147 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~~  147 (519)
                      ..+.++.+|||+|||+|.++..+++. + ..+|||||++ .|.+...+.++..   .+|.++.+|+...   ..+.  +.
T Consensus       128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~--~~  202 (293)
T PTZ00146        128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLV--PM  202 (293)
T ss_pred             eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhccc--CC
Confidence            45788999999999999999999987 3 4689999999 5665544444322   3478899998642   1122  57


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +|+|+++..   .  ......++.++.++|||||.++..
T Consensus       203 vDvV~~Dva---~--pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        203 VDVIFADVA---Q--PDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CCEEEEeCC---C--cchHHHHHHHHHHhccCCCEEEEE
Confidence            999999874   1  223445666788999999999863

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.96  E-value=2.2e-09  Score=100.72  Aligned_cols=100  Identities=23%  Similarity=0.349  Sum_probs=71.8

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCC
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPF  143 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~  143 (519)
                      ..+.++.+|||+|||+|.++..+++.  +..+|+|+|+|++.          .. .+++++++|+.+..        .+.
T Consensus        28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~   96 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-ENVDFIRGDFTDEEVLNKIRERVGD   96 (188)
T ss_pred             cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-CCceEEEeeCCChhHHHHHHHHhCC
Confidence            45678999999999999999888775  35589999999632          11 23788888887642        232


Q ss_pred             CCceeeEEEEeccccc-----ccc---chhHHHHHHHHhcccCcCeEEEcc
Q psy14674        144 GIQKVDIIISEWMGYC-----LFY---ESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~-----l~~---e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                        ++||+|+++...+.     +.+   ....+.++..+.++|+|||.++..
T Consensus        97 --~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438        97 --DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             --CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence              68999998653211     111   122467788899999999998864

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.95  E-value=3.9e-09  Score=102.33  Aligned_cols=111  Identities=19%  Similarity=0.166  Sum_probs=82.7

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC-C
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF-G  144 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~-~  144 (519)
                      .|+....+.+|.+|||.|.|+|.++..++++  +.++|+..|.. +.++.|+++++..|+.++|++.+.|+.+-.++. .
T Consensus        31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~  110 (247)
T PF08704_consen   31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL  110 (247)
T ss_dssp             HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred             HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence            4555688999999999999999999999987  56799999999 699999999999999999999999996533321 1


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhccc-CcCeEEEccC
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWL-ATNGLLFPDK  187 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~L-kpgG~lip~~  187 (519)
                      ...+|.|+.+..        ....++..+.+.| ++||.++.-.
T Consensus       111 ~~~~DavfLDlp--------~Pw~~i~~~~~~L~~~gG~i~~fs  146 (247)
T PF08704_consen  111 ESDFDAVFLDLP--------DPWEAIPHAKRALKKPGGRICCFS  146 (247)
T ss_dssp             TTSEEEEEEESS--------SGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred             cCcccEEEEeCC--------CHHHHHHHHHHHHhcCCceEEEEC
Confidence            267999988764        2333456667889 8999887433

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.95  E-value=3.2e-09  Score=100.61  Aligned_cols=109  Identities=21%  Similarity=0.249  Sum_probs=88.2

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEE-ceeeEeecCCCCceeeE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILK-GKVEEVELPFGIQKVDI  150 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~D~  150 (519)
                      ...++++||+||++.|+.++++|.. + ..++++||.+ ++++.|++++++.|+.++|+++. +|..+.-.....++||+
T Consensus        56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl  135 (219)
T COG4122          56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL  135 (219)
T ss_pred             HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence            4558899999999999999988886 4 5699999999 69999999999999999999999 57766421112289999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+.+.-      ......+++.+.++|+|||+++.+..-
T Consensus       136 iFIDad------K~~yp~~le~~~~lLr~GGliv~DNvl  168 (219)
T COG4122         136 VFIDAD------KADYPEYLERALPLLRPGGLIVADNVL  168 (219)
T ss_pred             EEEeCC------hhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence            987642      233556677777899999999988876

>PLN02672 methionine S-methyltransferase

Probab=98.94  E-value=5.1e-09  Score=119.50  Aligned_cols=144  Identities=15%  Similarity=0.185  Sum_probs=100.2

Q ss_pred             cccHHhhhcHHHHHHHHHHHHhcC-CCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCC-
Q psy14674         51 GIHEEMLKDEVRTMTYRNSMYHNK-HLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLS-  126 (519)
Q Consensus        51 ~~~~~~l~d~~r~~~y~~ai~~~~-~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~-  126 (519)
                      ......+..+..++.+.+.+.... ...++.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|++|++.|+++ 
T Consensus        90 ~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~  169 (1082)
T PLN02672         90 MEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDD  169 (1082)
T ss_pred             eeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccc
Confidence            344455555666777766632211 1124679999999999999999876 45699999999 6999999999987542 


Q ss_pred             --------------CcEEEEEceeeEeecCCCCceeeEEEEecccc------ccc-----c-------------------
Q psy14674        127 --------------DVVTILKGKVEEVELPFGIQKVDIIISEWMGY------CLF-----Y-------------------  162 (519)
Q Consensus       127 --------------~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~------~l~-----~-------------------  162 (519)
                                    ++++++++|+.+.. +....+||+|||++..-      .+.     +                   
T Consensus       170 ~~~~~~~~~~~~l~~rV~f~~sDl~~~~-~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~  248 (1082)
T PLN02672        170 DGLPVYDGEGKTLLDRVEFYESDLLGYC-RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFV  248 (1082)
T ss_pred             ccccccccccccccccEEEEECchhhhc-cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCC
Confidence                          57999999987642 21113799999987410      000     0                   


Q ss_pred             --c---hhHHHHHHHHhcccCcCeEEEccCCccccccc
Q psy14674        163 --E---SMLDTVLYARDKWLATNGLLFPDKASLFICGI  195 (519)
Q Consensus       163 --e---~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i  195 (519)
                        +   .....++....++|+|||.++.+...-....+
T Consensus       249 ~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v  286 (1082)
T PLN02672        249 EDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAV  286 (1082)
T ss_pred             CCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHH
Confidence              1   12356777888999999999987765444433

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.94  E-value=4.4e-09  Score=106.81  Aligned_cols=104  Identities=16%  Similarity=0.181  Sum_probs=78.2

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||+|||+|.+++.+++.+ ++|+|+|.+ ++++.|+++++.+++ ++++++++|+.++.... .++||+|++++
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~-~~~~D~Vv~dP  248 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ-GEVPDLVLVNP  248 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc-CCCCeEEEECC
Confidence            356899999999999999999986 599999999 699999999999998 46999999998753211 15799999987


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .-..     ....++..+. .++|+++++.+...
T Consensus       249 Pr~G-----~~~~~~~~l~-~~~~~~ivyvsc~p  276 (315)
T PRK03522        249 PRRG-----IGKELCDYLS-QMAPRFILYSSCNA  276 (315)
T ss_pred             CCCC-----ccHHHHHHHH-HcCCCeEEEEECCc
Confidence            6322     2233333332 36777777655443

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.94  E-value=2.9e-09  Score=98.52  Aligned_cols=107  Identities=28%  Similarity=0.474  Sum_probs=74.6

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCC--CCCcEEEEEceeeEe---e-cCCCCc
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNN--LSDVVTILKGKVEEV---E-LPFGIQ  146 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~--~~~~i~~~~~d~~~~---~-~~~~~~  146 (519)
                      ....++++|||+|||+|..++.+++. +..+|+..|.++.++.++.+++.|+  ...++.+...+..+-   . +..  .
T Consensus        41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~--~  118 (173)
T PF10294_consen   41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEP--H  118 (173)
T ss_dssp             GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS---S
T ss_pred             hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccccc--c
Confidence            44678899999999999999999999 7789999999999999999999988  566688877765431   1 222  5


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      +||+|++.-+   +..+...+.++..+.++|+++|.++.
T Consensus       119 ~~D~IlasDv---~Y~~~~~~~L~~tl~~ll~~~~~vl~  154 (173)
T PF10294_consen  119 SFDVILASDV---LYDEELFEPLVRTLKRLLKPNGKVLL  154 (173)
T ss_dssp             SBSEEEEES-----S-GGGHHHHHHHHHHHBTT-TTEEE
T ss_pred             cCCEEEEecc---cchHHHHHHHHHHHHHHhCCCCEEEE
Confidence            8999998665   44567788899999999999987553

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.93  E-value=8.4e-09  Score=104.69  Aligned_cols=110  Identities=21%  Similarity=0.280  Sum_probs=78.3

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC---------CCCCcEEEEEceeeEee----cCC
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN---------NLSDVVTILKGKVEEVE----LPF  143 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~---------~~~~~i~~~~~d~~~~~----~~~  143 (519)
                      ++.+|||+|||-|.-..-..+++.++++|+|++ ..++.|+++.+..         ...-...++.+|.....    ++.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            788999999999987777777888999999999 6899999988321         11123567777765432    233


Q ss_pred             CCceeeEEEEec-cccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        144 GIQKVDIIISEW-MGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       144 ~~~~~D~Ivs~~-~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ...+||+|-|-. +.|.+..+.....++..+...|+|||++|-..
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~  186 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT  186 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            225999998865 45555667778889999999999999999443

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.93  E-value=2.1e-09  Score=100.13  Aligned_cols=110  Identities=25%  Similarity=0.330  Sum_probs=81.0

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~Ivs  153 (519)
                      ..|.+|||+-||||.+++.+..+|+++|+.||.+ ..++..+++++..+..++++++.+|+...-  +.....+||+|+.
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            5799999999999999999999999999999999 699999999999999888999999976541  2101279999999


Q ss_pred             eccccccccchhHHHHHHHHh--cccCcCeEEEccCCc
Q psy14674        154 EWMGYCLFYESMLDTVLYARD--KWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~--r~LkpgG~lip~~~~  189 (519)
                      ++....-..   ...++..+.  .+|+++|.++.+...
T Consensus       121 DPPY~~~~~---~~~~l~~l~~~~~l~~~~~ii~E~~~  155 (183)
T PF03602_consen  121 DPPYAKGLY---YEELLELLAENNLLNEDGLIIIEHSK  155 (183)
T ss_dssp             --STTSCHH---HHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred             CCCcccchH---HHHHHHHHHHCCCCCCCEEEEEEecC
Confidence            986332221   245555554  899999999977755

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.93  E-value=6.9e-09  Score=99.28  Aligned_cols=108  Identities=19%  Similarity=0.124  Sum_probs=81.9

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHH------H-C----CCCCcEEEEEceeeEeecC-
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVD------K-N----NLSDVVTILKGKVEEVELP-  142 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~------~-~----~~~~~i~~~~~d~~~~~~~-  142 (519)
                      ..++.+||+.|||.|.-+.++|++|. +|+|+|+|+ +++.+.+...      . +    --...|+++++|+.++... 
T Consensus        41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            34678999999999999999999998 799999994 7777655210      0 0    0123599999999987532 


Q ss_pred             CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ...++||+|+-....+.+ ...+.....+.+.++|+|||.++.
T Consensus       120 ~~~~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~lll  161 (226)
T PRK13256        120 NNLPVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILL  161 (226)
T ss_pred             cccCCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEE
Confidence            222689999876665555 456788889999999999998763

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.91  E-value=7.6e-09  Score=110.04  Aligned_cols=117  Identities=24%  Similarity=0.310  Sum_probs=85.3

Q ss_pred             HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--
Q psy14674         64 MTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--  140 (519)
Q Consensus        64 ~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--  140 (519)
                      +...+.++......++.+|||+|||+|.+++.+++.+ .+|+|+|+| +|++.|+++++.+++.+ ++++.+|+.+..  
T Consensus       283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~~  360 (443)
T PRK13168        283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFTD  360 (443)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhhh
Confidence            3333444444456678899999999999999999886 599999999 69999999999999864 999999987531  


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .+...++||+|++++.-..+      ..++..+.+ ++|+++++.+...
T Consensus       361 ~~~~~~~fD~Vi~dPPr~g~------~~~~~~l~~-~~~~~ivyvSCnp  402 (443)
T PRK13168        361 QPWALGGFDKVLLDPPRAGA------AEVMQALAK-LGPKRIVYVSCNP  402 (443)
T ss_pred             hhhhcCCCCEEEECcCCcCh------HHHHHHHHh-cCCCeEEEEEeCh
Confidence            11112579999998763321      233454544 6888887765533

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.90  E-value=1.5e-08  Score=93.21  Aligned_cols=113  Identities=23%  Similarity=0.302  Sum_probs=87.6

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIII  152 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Iv  152 (519)
                      ...|.++||+-+|||.+++.++.+|+.+++.||.+ ......++|++..+...+.+++..|+...  .+.. .++||+|+
T Consensus        41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~-~~~FDlVf  119 (187)
T COG0742          41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT-REPFDLVF  119 (187)
T ss_pred             ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC-CCcccEEE
Confidence            36899999999999999999999999999999999 79999999999999888899999999844  2221 13499999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .++....-..+.......-.-..+|+|+|.++.+...
T Consensus       120 lDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~  156 (187)
T COG0742         120 LDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK  156 (187)
T ss_pred             eCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence            9987442111111222222245889999999988776

>KOG1541|consensus

Probab=98.87  E-value=9.4e-09  Score=95.19  Aligned_cols=102  Identities=25%  Similarity=0.284  Sum_probs=75.4

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      +..-|||||||+|..+..+...|. ..+|+|+| .|++.|.+.--+      -.++.+|+-+ .+|...+.||-+||-..
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~-GlpfrpGtFDg~ISISA  121 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGE-GLPFRPGTFDGVISISA  121 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCC-CCCCCCCccceEEEeee
Confidence            467899999999999999998885 89999999 699999863211      2577788764 45554599999998543


Q ss_pred             cccccc--------chhHHHHHHHHhcccCcCeEEEccC
Q psy14674        157 GYCLFY--------ESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       157 ~~~l~~--------e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ...+.+        ...+..++..+..+|++|+..+..-
T Consensus       122 vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf  160 (270)
T KOG1541|consen  122 VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF  160 (270)
T ss_pred             eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence            222221        1335567777889999999887543

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.87  E-value=7.8e-09  Score=97.52  Aligned_cols=99  Identities=23%  Similarity=0.295  Sum_probs=72.6

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE-e-ecCCCCceeeEEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE-V-ELPFGIQKVDIII  152 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~~~D~Iv  152 (519)
                      +.++.+|||||||+|.++..+++.+...++|+|+| ++++.|++    .    +++++++|+.+ + +++.  ++||+|+
T Consensus        11 i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~----~~~~~~~d~~~~l~~~~~--~sfD~Vi   80 (194)
T TIGR02081        11 IPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R----GVNVIQGDLDEGLEAFPD--KSFDYVI   80 (194)
T ss_pred             cCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c----CCeEEEEEhhhcccccCC--CCcCEEE
Confidence            34678999999999999998887655588999999 68888764    2    26788888875 2 2333  7899999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +..+.+++   .....+++++.|.++++.+.+|..
T Consensus        81 ~~~~l~~~---~d~~~~l~e~~r~~~~~ii~~p~~  112 (194)
T TIGR02081        81 LSQTLQAT---RNPEEILDEMLRVGRHAIVSFPNF  112 (194)
T ss_pred             EhhHhHcC---cCHHHHHHHHHHhCCeEEEEcCCh
Confidence            98765544   346667777777777655555543

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN02366 spermidine synthase

Probab=98.84  E-value=1.6e-08  Score=101.65  Aligned_cols=111  Identities=17%  Similarity=0.114  Sum_probs=83.9

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHC--CC-CCcEEEEEceeeEee--cCCCCceee
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKN--NL-SDVVTILKGKVEEVE--LPFGIQKVD  149 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~--~~-~~~i~~~~~d~~~~~--~~~~~~~~D  149 (519)
                      .++++||+||||.|.++..+++.+ ..+|+.||++ ++++.|++.+...  ++ ..|++++.+|+.+.-  .+.  ++||
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~--~~yD  167 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPE--GTYD  167 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccC--CCCC
Confidence            567899999999999999999884 6799999999 5999999987643  23 358999999986541  222  6899


Q ss_pred             EEEEeccccccccc-hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        150 IIISEWMGYCLFYE-SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e-~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +|+++......... -.-..+++.+.+.|+|||+++....+
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s  208 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAES  208 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCC
Confidence            99997653221111 12346788889999999999876655

>PRK01581 speE spermidine synthase; Validated

Probab=98.81  E-value=2e-08  Score=101.65  Aligned_cols=113  Identities=16%  Similarity=0.192  Sum_probs=81.4

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHH-----HHCCC-CCcEEEEEceeeEeecCCCCce
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIV-----DKNNL-SDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~-----~~~~~-~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      ...+++||+||||+|..+..+.+. +..+|++||++ +|++.|++..     ....+ ..+++++.+|+.++- ....++
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL-~~~~~~  226 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL-SSPSSL  226 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH-HhcCCC
Confidence            355679999999999988888887 46799999999 6999999621     11222 468999999998752 112268


Q ss_pred             eeEEEEecccccc--ccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        148 VDIIISEWMGYCL--FYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       148 ~D~Ivs~~~~~~l--~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ||+|+++......  ...-.-..++..+++.|+|||+++.....
T Consensus       227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s  270 (374)
T PRK01581        227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNS  270 (374)
T ss_pred             ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            9999998642211  11112356788889999999999866544

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.81  E-value=2.1e-08  Score=100.23  Aligned_cols=119  Identities=25%  Similarity=0.310  Sum_probs=96.4

Q ss_pred             HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEc-eeeEeecCC
Q psy14674         66 YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG-KVEEVELPF  143 (519)
Q Consensus        66 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~-d~~~~~~~~  143 (519)
                      +.+++.......+|..|||=-||||.+.+.+.-.|+ +|+|+|++ .|++-|+.|++..++.+ ..+... |+..++++.
T Consensus       185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~~  262 (347)
T COG1041         185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLRD  262 (347)
T ss_pred             HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCCC
Confidence            445666667889999999999999999999999988 99999999 69999999999999876 555555 999998885


Q ss_pred             CCceeeEEEEecc-cccc-----ccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        144 GIQKVDIIISEWM-GYCL-----FYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       144 ~~~~~D~Ivs~~~-~~~l-----~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                        .++|.|++++. |-..     .-+..+..+++...+.||+||++++...
T Consensus       263 --~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         263 --NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             --CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence              57999999874 1111     1135577888889999999998875443

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.81  E-value=2.1e-08  Score=106.37  Aligned_cols=110  Identities=25%  Similarity=0.328  Sum_probs=81.5

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCC
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGI  145 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~  145 (519)
                      .+.......++.+|||+|||+|.+++.+|+. +++|+|+|++ ++++.|+++++.+++. +++++.+|+.+.  .++...
T Consensus       283 ~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~~~  360 (431)
T TIGR00479       283 RALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPWAG  360 (431)
T ss_pred             HHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHhcC
Confidence            3333345567789999999999999999987 4599999999 6999999999999985 599999999763  111112


Q ss_pred             ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ++||+|+.++.-..     ....+++.+. .|+|+++++.+
T Consensus       361 ~~~D~vi~dPPr~G-----~~~~~l~~l~-~l~~~~ivyvs  395 (431)
T TIGR00479       361 QIPDVLLLDPPRKG-----CAAEVLRTII-ELKPERIVYVS  395 (431)
T ss_pred             CCCCEEEECcCCCC-----CCHHHHHHHH-hcCCCEEEEEc
Confidence            57999998876322     2344455544 37898877654

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.79  E-value=2.1e-08  Score=97.57  Aligned_cols=110  Identities=14%  Similarity=0.138  Sum_probs=86.9

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCC---CCce
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPF---GIQK  147 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~---~~~~  147 (519)
                      ..+.++||+||+++|..++.+|+.  ...+|+++|.+ +.++.|+++++..|+.++|+++.+++.+.  .+..   ..++
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~  156 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT  156 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence            456789999999999999988876  24599999999 69999999999999999999999998775  1110   0268


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLF  191 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~  191 (519)
                      ||+|+.+.-      .......++.+.++|+|||+++.+..-|.
T Consensus       157 fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~~  194 (247)
T PLN02589        157 FDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLWN  194 (247)
T ss_pred             ccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCCC
Confidence            999987643      12344556666789999999998877643

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.79  E-value=2.5e-08  Score=103.59  Aligned_cols=104  Identities=12%  Similarity=0.158  Sum_probs=80.0

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||+|||+|.+++.++..+ .+|+|+|++ ++++.|+++++.+++. +++++.+|+.++... ..++||+|+.++
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~-~~~~~D~vi~DP  308 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATA-QMSAPELVLVNP  308 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHh-cCCCCCEEEECC
Confidence            456799999999999999999876 599999999 6999999999999986 699999999764211 114699999998


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .-.     +....+++.+. .++|+++++.+...
T Consensus       309 Pr~-----G~~~~~l~~l~-~~~p~~ivyvsc~p  336 (374)
T TIGR02085       309 PRR-----GIGKELCDYLS-QMAPKFILYSSCNA  336 (374)
T ss_pred             CCC-----CCcHHHHHHHH-hcCCCeEEEEEeCH
Confidence            733     22344455553 47899888766543

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.79  E-value=1.4e-08  Score=93.56  Aligned_cols=103  Identities=24%  Similarity=0.320  Sum_probs=74.1

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDII  151 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~I  151 (519)
                      -+.+|.+|||+|||.|.+...+.+....+.+|+|++ +.+..+.+    +|    +.++++|+++-  .+++  ++||.|
T Consensus        10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f~d--~sFD~V   79 (193)
T PF07021_consen   10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADFPD--QSFDYV   79 (193)
T ss_pred             HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhCCC--CCccEE
Confidence            357899999999999999888887655599999999 55544433    34    68999999874  3454  899999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcc
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASL  190 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~  190 (519)
                      |.+-.   +..-...+.++.++.|+-|.+=+-+|+-+.|
T Consensus        80 Ilsqt---LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W  115 (193)
T PF07021_consen   80 ILSQT---LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHW  115 (193)
T ss_pred             ehHhH---HHhHhHHHHHHHHHHHhcCeEEEEecChHHH
Confidence            87655   3333456677777766655554555666553

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>KOG2899|consensus

Probab=98.79  E-value=2.8e-08  Score=93.34  Aligned_cols=114  Identities=24%  Similarity=0.342  Sum_probs=78.9

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechH-HHHHHHHHHHHCC---------------------------
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSN-IVEYAKEIVDKNN---------------------------  124 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~~~~A~~~~~~~~---------------------------  124 (519)
                      ...+.++.+|||||.+|.++..+|+. |...|.|+|+++ .++.|++.++..-                           
T Consensus        54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a  133 (288)
T KOG2899|consen   54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA  133 (288)
T ss_pred             ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence            45678899999999999999999987 888999999995 9999999875321                           


Q ss_pred             -------CCCcEEEEEceeeEe-e--cCCCCceeeEEEEecc---ccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        125 -------LSDVVTILKGKVEEV-E--LPFGIQKVDIIISEWM---GYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       125 -------~~~~i~~~~~d~~~~-~--~~~~~~~~D~Ivs~~~---~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                             +++++.+...+..-. .  +.....+||+|+|-.+   .|.-.+.+-+..++..+.++|.|||++|.+-
T Consensus       134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence                   011111111111100 0  0111268999999543   2333345568899999999999999998543

>KOG1975|consensus

Probab=98.78  E-value=1.8e-08  Score=98.33  Aligned_cols=116  Identities=21%  Similarity=0.266  Sum_probs=86.0

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCC-----cEEEEEceeeEee----cCC
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSD-----VVTILKGKVEEVE----LPF  143 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~-----~i~~~~~d~~~~~----~~~  143 (519)
                      .-..++..++|+|||-|.-.+-.-++|...++|+|+++ .++.|+++.++..-..     .+.|+.+|.....    ++.
T Consensus       113 ~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~  192 (389)
T KOG1975|consen  113 LYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF  192 (389)
T ss_pred             HHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence            34567889999999999988888888999999999996 8899988876432111     2688999876542    222


Q ss_pred             CCceeeEEEEecc-ccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        144 GIQKVDIIISEWM-GYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       144 ~~~~~D~Ivs~~~-~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .+.+||+|-|-.. .|.+..+.....++..+.+.|+|||++|-....
T Consensus       193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd  239 (389)
T KOG1975|consen  193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD  239 (389)
T ss_pred             CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence            2245999988554 344445566778889999999999999944433

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.76  E-value=4e-08  Score=91.42  Aligned_cols=121  Identities=23%  Similarity=0.329  Sum_probs=85.7

Q ss_pred             HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CC--------EEEEEech-HHHHHHHHHHHHCCCCCcEEEEE
Q psy14674         65 TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG--AA--------RVIGIECS-NIVEYAKEIVDKNNLSDVVTILK  133 (519)
Q Consensus        65 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~--------~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~  133 (519)
                      ....+++......++..|||--||+|.+.+.++..+  ..        +++|+|++ ++++.|++|++..++.+.|.+.+
T Consensus        15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~   94 (179)
T PF01170_consen   15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ   94 (179)
T ss_dssp             HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred             HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence            344566666777889999999999999988877652  22        38899999 69999999999999999999999


Q ss_pred             ceeeEeecCCCCceeeEEEEecc-ccccc----cchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        134 GKVEEVELPFGIQKVDIIISEWM-GYCLF----YESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       134 ~d~~~~~~~~~~~~~D~Ivs~~~-~~~l~----~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      .|+.+++++.  +.+|+||+++. |.-+.    .+.....+++.+.+.|++...++...
T Consensus        95 ~D~~~l~~~~--~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~  151 (179)
T PF01170_consen   95 WDARELPLPD--GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS  151 (179)
T ss_dssp             --GGGGGGTT--SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred             cchhhccccc--CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence            9999987554  79999999885 22122    12445677888899999965555443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR00417 speE spermidine synthase

Probab=98.76  E-value=4.1e-08  Score=97.51  Aligned_cols=112  Identities=17%  Similarity=0.113  Sum_probs=80.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCC--C-CCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNN--L-SDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ..+++||+||||+|.++..+++.+ ..+|+++|++ ++++.|++.+...+  + ..+++++.+|..+.- ....++||+|
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l-~~~~~~yDvI  149 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFL-ADTENTFDVI  149 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHH-HhCCCCccEE
Confidence            345699999999999998887774 6799999999 69999999875432  1 246888888876531 1112789999


Q ss_pred             EEeccccccccch-hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        152 ISEWMGYCLFYES-MLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       152 vs~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +++.......... ....+++.+.+.|+|||+++....+
T Consensus       150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~  188 (270)
T TIGR00417       150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSES  188 (270)
T ss_pred             EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            9976532211111 1356778889999999999977544

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.74  E-value=4.3e-08  Score=98.15  Aligned_cols=85  Identities=21%  Similarity=0.290  Sum_probs=70.2

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .|.....+.++.+|||||||+|.++..+++.+ .+|+|+|++ .|++.+++++..++..++++++++|+.+..+    ..
T Consensus        27 ~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~----~~  101 (294)
T PTZ00338         27 KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF----PY  101 (294)
T ss_pred             HHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc----cc
Confidence            34444566788999999999999999998875 489999999 6999999999887766779999999987654    36


Q ss_pred             eeEEEEecccc
Q psy14674        148 VDIIISEWMGY  158 (519)
Q Consensus       148 ~D~Ivs~~~~~  158 (519)
                      +|+|+++...+
T Consensus       102 ~d~VvaNlPY~  112 (294)
T PTZ00338        102 FDVCVANVPYQ  112 (294)
T ss_pred             cCEEEecCCcc
Confidence            89999987633

>PRK03612 spermidine synthase; Provisional

Probab=98.73  E-value=2.8e-08  Score=107.57  Aligned_cols=112  Identities=20%  Similarity=0.153  Sum_probs=81.7

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCC-CEEEEEech-HHHHHHHHH--HHH---CCCC-CcEEEEEceeeEeecCCCCcee
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGA-ARVIGIECS-NIVEYAKEI--VDK---NNLS-DVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~A~~~--~~~---~~~~-~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      .++++|||||||+|..+..+++.+. .+|++||++ ++++.|+++  ...   ..+. .+++++.+|..+.- ....++|
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l-~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWL-RKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHH-HhCCCCC
Confidence            4678999999999999998888754 799999999 699999983  221   1232 47999999988752 1112789


Q ss_pred             eEEEEecccccccc--chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        149 DIIISEWMGYCLFY--ESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       149 D~Ivs~~~~~~l~~--e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+|+++........  .-.-..+++.+.+.|||||.++.+...
T Consensus       375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~  417 (521)
T PRK03612        375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS  417 (521)
T ss_pred             CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence            99999865322110  111245677888999999999977654

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.70  E-value=6.9e-08  Score=95.25  Aligned_cols=82  Identities=26%  Similarity=0.352  Sum_probs=66.7

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .|.....+.++.+|||||||+|.++..+++.+ .+|+|+|++ .|++.+++++..   .++++++++|+.+++++    .
T Consensus        20 ~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~~----~   91 (258)
T PRK14896         20 RIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDLP----E   91 (258)
T ss_pred             HHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCch----h
Confidence            34444566788999999999999999999985 499999999 699999988754   24699999999886554    4


Q ss_pred             eeEEEEecccc
Q psy14674        148 VDIIISEWMGY  158 (519)
Q Consensus       148 ~D~Ivs~~~~~  158 (519)
                      +|.|+++...+
T Consensus        92 ~d~Vv~NlPy~  102 (258)
T PRK14896         92 FNKVVSNLPYQ  102 (258)
T ss_pred             ceEEEEcCCcc
Confidence            89999987643

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.70  E-value=5.8e-08  Score=91.38  Aligned_cols=99  Identities=28%  Similarity=0.375  Sum_probs=71.3

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ...+|.+|||+.||-|.+++.+|+. .++.|+|+|++ .+++.++++++.|++.++|..+++|+.++.. .  +.+|.|+
T Consensus        98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~--~~~drvi  174 (200)
T PF02475_consen   98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-E--GKFDRVI  174 (200)
T ss_dssp             C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----T--T-EEEEE
T ss_pred             cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-c--cccCEEE
Confidence            3678999999999999999999983 46689999999 5999999999999999999999999988744 3  8999999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEE
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLL  183 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~l  183 (519)
                      .+......       .++.+..+++++||.+
T Consensus       175 m~lp~~~~-------~fl~~~~~~~~~~g~i  198 (200)
T PF02475_consen  175 MNLPESSL-------EFLDAALSLLKEGGII  198 (200)
T ss_dssp             E--TSSGG-------GGHHHHHHHEEEEEEE
T ss_pred             ECChHHHH-------HHHHHHHHHhcCCcEE
Confidence            87653222       2355556788999876

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.67  E-value=8e-08  Score=92.03  Aligned_cols=107  Identities=25%  Similarity=0.269  Sum_probs=79.7

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHH-------CC----CCCcEEEEEceeeEeecC
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDK-------NN----LSDVVTILKGKVEEVELP  142 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~-------~~----~~~~i~~~~~d~~~~~~~  142 (519)
                      ...++.+||..|||.|.-...+|++|. +|+|+|+|+ +++.|.+....       .+    -.++|+++++|+.++...
T Consensus        34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~  112 (218)
T PF05724_consen   34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE  112 (218)
T ss_dssp             TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred             CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence            456778999999999999999999988 999999994 77777433211       00    123589999999886543


Q ss_pred             CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      . .++||+|+-....+.+ ...+.+...+.+.++|+|||.++
T Consensus       113 ~-~g~fD~iyDr~~l~Al-pp~~R~~Ya~~l~~ll~p~g~~l  152 (218)
T PF05724_consen  113 D-VGKFDLIYDRTFLCAL-PPEMRERYAQQLASLLKPGGRGL  152 (218)
T ss_dssp             C-HHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEE
T ss_pred             h-cCCceEEEEecccccC-CHHHHHHHHHHHHHHhCCCCcEE
Confidence            2 2589999987665545 45678889999999999999954

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG3010|consensus

Probab=98.65  E-value=1.6e-08  Score=95.29  Aligned_cols=97  Identities=20%  Similarity=0.214  Sum_probs=67.7

Q ss_pred             EEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccc
Q psy14674         81 IVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYC  159 (519)
Q Consensus        81 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~  159 (519)
                      .++|+|||+|..+..+|.. .++|+|+|+| .|++.|++.-...-.....+....++.++  ...++++|+|+|.-..|.
T Consensus        36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L--~g~e~SVDlI~~Aqa~HW  112 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDL--LGGEESVDLITAAQAVHW  112 (261)
T ss_pred             eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccc--cCCCcceeeehhhhhHHh
Confidence            8999999999888888887 6799999999 69998887543221111123333333333  322389999998666555


Q ss_pred             cccchhHHHHHHHHhcccCcCe-EEE
Q psy14674        160 LFYESMLDTVLYARDKWLATNG-LLF  184 (519)
Q Consensus       160 l~~e~~l~~~l~~~~r~LkpgG-~li  184 (519)
                      +    +++.+.+.+.|+||++| .+.
T Consensus       113 F----dle~fy~~~~rvLRk~Gg~ia  134 (261)
T KOG3010|consen  113 F----DLERFYKEAYRVLRKDGGLIA  134 (261)
T ss_pred             h----chHHHHHHHHHHcCCCCCEEE
Confidence            4    36777888899998876 544

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.65  E-value=8.3e-08  Score=95.41  Aligned_cols=80  Identities=23%  Similarity=0.297  Sum_probs=64.6

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      +.....+.++.+|||||||+|.++..+++.+. +|+|+|++ .|++.++++...    ++++++++|+.+++++.  -.+
T Consensus        34 i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~--~~~  106 (272)
T PRK00274         34 IVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSE--LQP  106 (272)
T ss_pred             HHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHH--cCc
Confidence            33344567888999999999999999999865 99999999 699999887642    46999999999876552  125


Q ss_pred             eEEEEecc
Q psy14674        149 DIIISEWM  156 (519)
Q Consensus       149 D~Ivs~~~  156 (519)
                      |.||+++.
T Consensus       107 ~~vv~NlP  114 (272)
T PRK00274        107 LKVVANLP  114 (272)
T ss_pred             ceEEEeCC
Confidence            89999875

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.62  E-value=1.6e-07  Score=88.47  Aligned_cols=106  Identities=26%  Similarity=0.326  Sum_probs=75.9

Q ss_pred             EEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe---ecCCCCceeeEEEEec
Q psy14674         81 IVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV---ELPFGIQKVDIIISEW  155 (519)
Q Consensus        81 ~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~~~D~Ivs~~  155 (519)
                      .+||||||.|.+.+.+|+. +...++|+|++ +.+..|.+++...++.+ +.++++|+..+   -++.  +++|.|....
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~--~~v~~i~i~F   96 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPP--GSVDRIYINF   96 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTT--TSEEEEEEES
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccC--CchheEEEeC
Confidence            9999999999988877766 77799999999 78888888888888865 99999998874   2333  7899998755


Q ss_pred             cccccccc-----hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLFYE-----SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e-----~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ..-..-..     -.-..++..+.+.|+|||.+...+-.
T Consensus        97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~  135 (195)
T PF02390_consen   97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV  135 (195)
T ss_dssp             -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred             CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence            43222211     12346788889999999988755433

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.61  E-value=2.7e-08  Score=92.97  Aligned_cols=113  Identities=27%  Similarity=0.283  Sum_probs=89.1

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC-CCcEEEEEceeeEe--ecCCCCceeeE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL-SDVVTILKGKVEEV--ELPFGIQKVDI  150 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~-~~~i~~~~~d~~~~--~~~~~~~~~D~  150 (519)
                      ....|.+|||...|-|..++.++++|+.+|+.+|.+ ..++.|.-|-=..++ +.+|+++.||+.++  .+++  ++||+
T Consensus       131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D--~sfDa  208 (287)
T COG2521         131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDD--ESFDA  208 (287)
T ss_pred             ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCc--cccce
Confidence            455799999999999999999999999999999999 588887654211122 22489999999887  4454  89999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+.++.-..+..+-.-+.+..++.|+|||||.++--..+
T Consensus       209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~  247 (287)
T COG2521         209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGN  247 (287)
T ss_pred             EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCC
Confidence            999887555555656677888999999999999855444

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.60  E-value=1.7e-07  Score=94.43  Aligned_cols=81  Identities=16%  Similarity=0.187  Sum_probs=60.5

Q ss_pred             CCCEEEEECCcccHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHC-CCCCcEEEEE-ceeeEee--cCCCCceeeEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKN-NLSDVVTILK-GKVEEVE--LPFGIQKVDII  151 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~-~~~~~i~~~~-~d~~~~~--~~~~~~~~D~I  151 (519)
                      ++.++||||||+|.+...++. ....+++|+|++ .+++.|+++++.| ++.++|+++. .+..++.  +....++||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            457999999999966655544 444599999999 5999999999999 7999998865 3333221  10112689999


Q ss_pred             EEecccc
Q psy14674        152 ISEWMGY  158 (519)
Q Consensus       152 vs~~~~~  158 (519)
                      +|++..+
T Consensus       194 vcNPPf~  200 (321)
T PRK11727        194 LCNPPFH  200 (321)
T ss_pred             EeCCCCc
Confidence            9999744

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.59  E-value=1.5e-07  Score=90.57  Aligned_cols=99  Identities=22%  Similarity=0.261  Sum_probs=61.3

Q ss_pred             HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHH-HHHHHHHCCCCCcE-EEEEceeeEee---
Q psy14674         67 RNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEY-AKEIVDKNNLSDVV-TILKGKVEEVE---  140 (519)
Q Consensus        67 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~-A~~~~~~~~~~~~i-~~~~~d~~~~~---  140 (519)
                      ..++.......++++|||+|||+|.++..+++.|+++|+|+|++ .|+.. .++.       .++ .+...|+....   
T Consensus        64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~~  136 (228)
T TIGR00478        64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPAD  136 (228)
T ss_pred             HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHhH
Confidence            33443333346889999999999999999999999999999999 56654 2221       112 22333443221   


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +......+|++++..           ..++..+.++|+| |.++
T Consensus       137 ~~~d~~~~DvsfiS~-----------~~~l~~i~~~l~~-~~~~  168 (228)
T TIGR00478       137 IFPDFATFDVSFISL-----------ISILPELDLLLNP-NDLT  168 (228)
T ss_pred             cCCCceeeeEEEeeh-----------HhHHHHHHHHhCc-CeEE
Confidence            111113567665532           2235666788888 7655

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG2361|consensus

Probab=98.57  E-value=1.4e-07  Score=88.92  Aligned_cols=106  Identities=20%  Similarity=0.248  Sum_probs=76.9

Q ss_pred             EEEEECCcccHHHHHHHHcC---CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEEEEe
Q psy14674         81 IVLDIGCGTGILSMFAAKSG---AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDIIISE  154 (519)
Q Consensus        81 ~VLDiGcGtG~ls~~la~~g---~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~Ivs~  154 (519)
                      +||+||||.|.....+.+-.   .-+|+|+|.| .+++..+++...+.  .++.....|+..-.  -+...+++|+|++-
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I  151 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI  151 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence            89999999999888777652   2489999999 58888887765433  34555555554322  22233789999987


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .+...+..+. ...++..+.++|||||.++.....
T Consensus       152 FvLSAi~pek-~~~a~~nl~~llKPGG~llfrDYg  185 (264)
T KOG2361|consen  152 FVLSAIHPEK-MQSVIKNLRTLLKPGGSLLFRDYG  185 (264)
T ss_pred             EEEeccChHH-HHHHHHHHHHHhCCCcEEEEeecc
Confidence            7665555554 567789999999999999977655

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.55  E-value=4.8e-07  Score=88.33  Aligned_cols=105  Identities=21%  Similarity=0.205  Sum_probs=81.3

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .+.......+.++|||||+|+|.++..++++ +..+++.+|.-++++.+++       .+||+++.+|+. -++|   . 
T Consensus        91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P---~-  158 (241)
T PF00891_consen   91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLP---V-  158 (241)
T ss_dssp             HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCS---S-
T ss_pred             hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhc---c-
Confidence            3444456667789999999999999988876 6669999999888888887       578999999998 4666   5 


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcC--eEEEcc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATN--GLLFPD  186 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~Lkpg--G~lip~  186 (519)
                      +|+++...+.|.... .....+|+.+++.|+||  |.++..
T Consensus       159 ~D~~~l~~vLh~~~d-~~~~~iL~~~~~al~pg~~g~llI~  198 (241)
T PF00891_consen  159 ADVYLLRHVLHDWSD-EDCVKILRNAAAALKPGKDGRLLII  198 (241)
T ss_dssp             ESEEEEESSGGGS-H-HHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred             ccceeeehhhhhcch-HHHHHHHHHHHHHhCCCCCCeEEEE
Confidence            999998888776554 44667899999999999  988743

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.53  E-value=2.1e-07  Score=96.49  Aligned_cols=98  Identities=20%  Similarity=0.217  Sum_probs=77.7

Q ss_pred             CCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         79 GKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      +.+|||++||+|.+++.++.. ++.+|+++|++ ++++.++++++.|++.+ ++++++|+..+-...  ++||+|+.++.
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~~--~~fD~V~lDP~  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHEE--RKFDVVDIDPF  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhhc--CCCCEEEECCC
Confidence            468999999999999998764 66799999999 69999999999999875 779999987642112  67999999875


Q ss_pred             ccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +.       ...++....+.+++||++..+
T Consensus       135 Gs-------~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 GS-------PAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             CC-------cHHHHHHHHHHhcCCCEEEEE
Confidence            21       233455544678999999877

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.51  E-value=4.8e-07  Score=93.21  Aligned_cols=100  Identities=21%  Similarity=0.235  Sum_probs=74.0

Q ss_pred             CEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC----------CC----
Q psy14674         80 KIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP----------FG----  144 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~----------~~----  144 (519)
                      .+|||+|||+|.+++.+++. +++|+|||.+ ++++.|+++++.+++.+ ++++.+|+.++...          ..    
T Consensus       199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLK  276 (353)
T ss_pred             CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccc
Confidence            47999999999999988876 4699999999 79999999999999865 99999999774211          00    


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ..++|+|+.++.-.     +....+++.+.   +|+++++.+...
T Consensus       277 ~~~~d~v~lDPPR~-----G~~~~~l~~l~---~~~~ivYvsC~p  313 (353)
T TIGR02143       277 SYNCSTIFVDPPRA-----GLDPDTCKLVQ---AYERILYISCNP  313 (353)
T ss_pred             cCCCCEEEECCCCC-----CCcHHHHHHHH---cCCcEEEEEcCH
Confidence            02379999988732     22344455443   367777755443

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.50  E-value=1.3e-06  Score=81.31  Aligned_cols=98  Identities=29%  Similarity=0.384  Sum_probs=77.3

Q ss_pred             EEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecccc
Q psy14674         81 IVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGY  158 (519)
Q Consensus        81 ~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~  158 (519)
                      +++|||+|.|.-++.+|-. +..+++.+|.+ .-+...+..+...|+++ ++++++++++ ....  ++||+|+|..+. 
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~-~~~~--~~fd~v~aRAv~-  125 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE-PEYR--ESFDVVTARAVA-  125 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH-TTTT--T-EEEEEEESSS-
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc-cccC--CCccEEEeehhc-
Confidence            8999999999888877665 66799999999 57777778888888875 9999999998 2222  899999998873 


Q ss_pred             ccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        159 CLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       159 ~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                            .+..++.-+.++|++||.++.-.+.
T Consensus       126 ------~l~~l~~~~~~~l~~~G~~l~~KG~  150 (184)
T PF02527_consen  126 ------PLDKLLELARPLLKPGGRLLAYKGP  150 (184)
T ss_dssp             ------SHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred             ------CHHHHHHHHHHhcCCCCEEEEEcCC
Confidence                  3566777788999999999866655

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG3191|consensus

Probab=98.50  E-value=1e-06  Score=79.60  Aligned_cols=103  Identities=20%  Similarity=0.287  Sum_probs=78.1

Q ss_pred             CCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         79 GKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .+.+||||||+|..+.++++.  +.....++|++ .+++..++.++.|+..  +.+++.|+... +..  +++|+++.++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~-l~~--~~VDvLvfNP  118 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSG-LRN--ESVDVLVFNP  118 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhh-hcc--CCccEEEECC
Confidence            679999999999999999887  45578899999 5889889988888764  78899888764 333  8999999876


Q ss_pred             ccccc------------------ccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        156 MGYCL------------------FYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       156 ~~~~l------------------~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ..---                  .+....+.++.++..+|.|.|.++.-
T Consensus       119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv  167 (209)
T KOG3191|consen  119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV  167 (209)
T ss_pred             CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence            31111                  11123566777777888999987643

>PLN02823 spermine synthase

Probab=98.48  E-value=5.4e-07  Score=91.71  Aligned_cols=110  Identities=14%  Similarity=0.217  Sum_probs=80.4

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCC--C-CCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNN--L-SDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ..++||.||+|.|.++..+.+. +..+|++||++ ++++.|++....++  + ..+++++.+|...+- ....++||+|+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L-~~~~~~yDvIi  181 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL-EKRDEKFDVII  181 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH-hhCCCCccEEE
Confidence            5679999999999999988886 57799999999 69999999875432  2 468999999988752 22227899999


Q ss_pred             Eeccccc---cccchhHHHHHH-HHhcccCcCeEEEccCC
Q psy14674        153 SEWMGYC---LFYESMLDTVLY-ARDKWLATNGLLFPDKA  188 (519)
Q Consensus       153 s~~~~~~---l~~e~~l~~~l~-~~~r~LkpgG~lip~~~  188 (519)
                      .+.....   ....-.-..+++ .+.+.|+|||+++.+..
T Consensus       182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~  221 (336)
T PLN02823        182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG  221 (336)
T ss_pred             ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence            9853211   011111234555 67899999999986544

>KOG0820|consensus

Probab=98.47  E-value=6.1e-07  Score=85.93  Aligned_cols=87  Identities=23%  Similarity=0.369  Sum_probs=75.8

Q ss_pred             HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC
Q psy14674         65 TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF  143 (519)
Q Consensus        65 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~  143 (519)
                      ...+.|...+.+.++..||++|-|||.++..+.++|+ +|+|+|++ .|+....++++....+++.++++||+...++| 
T Consensus        45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P-  122 (315)
T KOG0820|consen   45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP-  122 (315)
T ss_pred             HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence            3445677778899999999999999999999999966 99999999 59999999988877779999999999987777 


Q ss_pred             CCceeeEEEEecc
Q psy14674        144 GIQKVDIIISEWM  156 (519)
Q Consensus       144 ~~~~~D~Ivs~~~  156 (519)
                         .||.+|++..
T Consensus       123 ---~fd~cVsNlP  132 (315)
T KOG0820|consen  123 ---RFDGCVSNLP  132 (315)
T ss_pred             ---ccceeeccCC
Confidence               5999999764

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.46  E-value=3e-07  Score=84.00  Aligned_cols=78  Identities=8%  Similarity=0.003  Sum_probs=60.7

Q ss_pred             EEEech-HHHHHHHHHHHHC--CCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCe
Q psy14674        105 IGIECS-NIVEYAKEIVDKN--NLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNG  181 (519)
Q Consensus       105 ~gvD~s-~~~~~A~~~~~~~--~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG  181 (519)
                      +|+|+| +|++.|+++.+..  +..++++++++|++++++++  ++||+|++....+++   .....++++++|+|||||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~--~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG   75 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD--CEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGS   75 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC--CCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCe
Confidence            489999 6999998776532  22346999999999887665  799999986653333   457788999999999999


Q ss_pred             EEEccC
Q psy14674        182 LLFPDK  187 (519)
Q Consensus       182 ~lip~~  187 (519)
                      .++...
T Consensus        76 ~l~i~d   81 (160)
T PLN02232         76 RVSILD   81 (160)
T ss_pred             EEEEEE
Confidence            997443

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.46  E-value=7e-07  Score=92.39  Aligned_cols=99  Identities=20%  Similarity=0.218  Sum_probs=73.4

Q ss_pred             CEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCC------------C
Q psy14674         80 KIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPF------------G  144 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~------------~  144 (519)
                      .+|||++||+|.+++.+++. +++|+|||.+ ++++.|+++++.+++. +++++.+|+.++-  +..            .
T Consensus       208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~  285 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLK  285 (362)
T ss_pred             CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhccccccccccccc
Confidence            57999999999999988876 5699999999 6999999999999986 5999999997641  110            0


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      ..+||+|+.++.-.     +..+.++..+.+   |+++++.+..
T Consensus       286 ~~~~D~v~lDPPR~-----G~~~~~l~~l~~---~~~ivyvSC~  321 (362)
T PRK05031        286 SYNFSTIFVDPPRA-----GLDDETLKLVQA---YERILYISCN  321 (362)
T ss_pred             CCCCCEEEECCCCC-----CCcHHHHHHHHc---cCCEEEEEeC
Confidence            12589999998732     233444444433   6776665443

>KOG1663|consensus

Probab=98.45  E-value=1.2e-06  Score=82.27  Aligned_cols=112  Identities=21%  Similarity=0.224  Sum_probs=87.3

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--e-cC-CCCce
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--E-LP-FGIQK  147 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~-~~-~~~~~  147 (519)
                      .+..++++||||.=||..++..|.+  ..++|+++|++ +..+.+.+..+..|..++|+++++++.+.  + ++ .+.+.
T Consensus        70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~t  149 (237)
T KOG1663|consen   70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGT  149 (237)
T ss_pred             HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCc
Confidence            4567899999999999888877776  35599999999 69999999999999999999999998764  1 11 12378


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFI  192 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~  192 (519)
                      ||++|.+.-      ..........+.++||+||+++.+...|..
T Consensus       150 fDfaFvDad------K~nY~~y~e~~l~Llr~GGvi~~DNvl~~G  188 (237)
T KOG1663|consen  150 FDFAFVDAD------KDNYSNYYERLLRLLRVGGVIVVDNVLWPG  188 (237)
T ss_pred             eeEEEEccc------hHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence            999987542      112224455566999999999999887665

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.43  E-value=1.7e-06  Score=87.95  Aligned_cols=125  Identities=18%  Similarity=0.175  Sum_probs=96.7

Q ss_pred             HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCC----------------------------------------
Q psy14674         63 TMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA----------------------------------------  102 (519)
Q Consensus        63 ~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~----------------------------------------  102 (519)
                      .+....+|+......++..++|--||+|.+.+.+|..+..                                        
T Consensus       176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~  255 (381)
T COG0116         176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP  255 (381)
T ss_pred             hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence            4555667777788888899999999999999988876421                                        


Q ss_pred             EEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc-ccccccch----hHHHHHHHHhcc
Q psy14674        103 RVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM-GYCLFYES----MLDTVLYARDKW  176 (519)
Q Consensus       103 ~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~-~~~l~~e~----~l~~~l~~~~r~  176 (519)
                      .++|+|++ .+++.|+.|++..|+.+.|+|.++|+..+..+.  +.+|+|||++. |.-+..+.    ....+...+++.
T Consensus       256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~  333 (381)
T COG0116         256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL  333 (381)
T ss_pred             eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence            37899999 699999999999999999999999999986664  68999999986 22233332    333455566677


Q ss_pred             cCcCeEEEccCCc
Q psy14674        177 LATNGLLFPDKAS  189 (519)
Q Consensus       177 LkpgG~lip~~~~  189 (519)
                      ++--+.+++....
T Consensus       334 ~~~ws~~v~tt~e  346 (381)
T COG0116         334 LAGWSRYVFTTSE  346 (381)
T ss_pred             hcCCceEEEEccH
Confidence            7777777766555

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.39  E-value=8.5e-07  Score=89.52  Aligned_cols=102  Identities=27%  Similarity=0.318  Sum_probs=83.0

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ...|.+|||.-||-|.+++.+|+.|..+|+|+|++ .+++.++++++.|++.++|..++||+.++....  +.+|-|+..
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~--~~aDrIim~  263 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL--GVADRIIMG  263 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc--ccCCEEEeC
Confidence            45699999999999999999999998779999999 599999999999999999999999999875443  679999875


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ...   .    -..++....+.+++||.+-..
T Consensus       264 ~p~---~----a~~fl~~A~~~~k~~g~iHyy  288 (341)
T COG2520         264 LPK---S----AHEFLPLALELLKDGGIIHYY  288 (341)
T ss_pred             CCC---c----chhhHHHHHHHhhcCcEEEEE
Confidence            542   1    122344445778889987643

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.38  E-value=1.2e-06  Score=86.18  Aligned_cols=79  Identities=23%  Similarity=0.450  Sum_probs=63.0

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      +.......++.+|||||||+|.++..+++.+. +|+++|++ .+++.++++...   ..+++++++|+.+++++    .+
T Consensus        21 i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~----~~   92 (253)
T TIGR00755        21 IVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP----DF   92 (253)
T ss_pred             HHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh----Hc
Confidence            33445567789999999999999999999865 79999999 699999887643   34699999999886544    35


Q ss_pred             e---EEEEecc
Q psy14674        149 D---IIISEWM  156 (519)
Q Consensus       149 D---~Ivs~~~  156 (519)
                      |   +|+++..
T Consensus        93 d~~~~vvsNlP  103 (253)
T TIGR00755        93 PKQLKVVSNLP  103 (253)
T ss_pred             CCcceEEEcCC
Confidence            5   8888765

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.38  E-value=2.1e-06  Score=91.17  Aligned_cols=111  Identities=16%  Similarity=0.130  Sum_probs=86.2

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceee
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVD  149 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D  149 (519)
                      ...+|.+|||++||.|.=+..+|..  +...|+|+|++ .-++.+++++++.|+.+ +.+...|...+.  ++   +.||
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~~---~~fD  185 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALP---ETFD  185 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhch---hhcC
Confidence            4578999999999999988877775  34589999999 68999999999999875 888888887652  23   6799


Q ss_pred             EEEEecc----ccccccc---------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        150 IIISEWM----GYCLFYE---------------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       150 ~Ivs~~~----~~~l~~e---------------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .|+.+..    |.+-.+.               .....+|....++|||||.++-++|+
T Consensus       186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence            9996553    2221111               11246778888999999999999998

>KOG3420|consensus

Probab=98.38  E-value=4.4e-07  Score=78.70  Aligned_cols=80  Identities=20%  Similarity=0.324  Sum_probs=68.4

Q ss_pred             cCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         73 NKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ......|++++|+|||+|.++..++-.+...|+|+|+. ++++.+++|+....++  +.++++|+.++.+..  +.||.+
T Consensus        43 TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~--g~fDta  118 (185)
T KOG3420|consen   43 TYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKG--GIFDTA  118 (185)
T ss_pred             hhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccC--CeEeeE
Confidence            34567899999999999999977777788899999999 6999999999887765  699999999876554  899999


Q ss_pred             EEecc
Q psy14674        152 ISEWM  156 (519)
Q Consensus       152 vs~~~  156 (519)
                      +.++.
T Consensus       119 viNpp  123 (185)
T KOG3420|consen  119 VINPP  123 (185)
T ss_pred             EecCC
Confidence            98764

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.37  E-value=1.7e-06  Score=97.01  Aligned_cols=122  Identities=18%  Similarity=0.215  Sum_probs=85.7

Q ss_pred             HHHHHHHHHhcCCC-CCCCEEEEECCcccHHHHHHHHc------C-----------------------------------
Q psy14674         63 TMTYRNSMYHNKHL-FKGKIVLDIGCGTGILSMFAAKS------G-----------------------------------  100 (519)
Q Consensus        63 ~~~y~~ai~~~~~~-~~~~~VLDiGcGtG~ls~~la~~------g-----------------------------------  100 (519)
                      .+.+..+++..... .++..++|.+||+|.+.+.+|..      |                                   
T Consensus       174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~  253 (702)
T PRK11783        174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA  253 (702)
T ss_pred             cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence            34555666665555 56789999999999988877652      0                                   


Q ss_pred             --CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc-ccccccchhHHHHHHHHhcc
Q psy14674        101 --AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM-GYCLFYESMLDTVLYARDKW  176 (519)
Q Consensus       101 --~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~-~~~l~~e~~l~~~l~~~~r~  176 (519)
                        ..+++|+|++ .+++.|++|+..+|+.+.|++.++|+.++..+...+++|+|++++. +.-+.....+..+...+...
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~  333 (702)
T PRK11783        254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR  333 (702)
T ss_pred             ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH
Confidence              1269999999 6999999999999999899999999998765532257999999975 22222223334443333333


Q ss_pred             c---CcCeEEE
Q psy14674        177 L---ATNGLLF  184 (519)
Q Consensus       177 L---kpgG~li  184 (519)
                      |   .+|+.+.
T Consensus       334 lk~~~~g~~~~  344 (702)
T PRK11783        334 LKQQFGGWNAA  344 (702)
T ss_pred             HHHhCCCCeEE
Confidence            3   3776554

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=1.4e-06  Score=91.48  Aligned_cols=118  Identities=24%  Similarity=0.281  Sum_probs=88.4

Q ss_pred             HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC
Q psy14674         64 MTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP  142 (519)
Q Consensus        64 ~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~  142 (519)
                      +.+...++......++.+|||+=||.|.+++.+|+. .++|+|+|++ ++++.|+++++.|++.| ++|+.++++++...
T Consensus       279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~  356 (432)
T COG2265         279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPA  356 (432)
T ss_pred             HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhh
Confidence            333334444556678889999999999999999976 5699999999 69999999999999988 99999999987432


Q ss_pred             C-CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        143 F-GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       143 ~-~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      . ....+|.|+.++.-.++.     +.+++.+. .++|..+++.+...
T Consensus       357 ~~~~~~~d~VvvDPPR~G~~-----~~~lk~l~-~~~p~~IvYVSCNP  398 (432)
T COG2265         357 WWEGYKPDVVVVDPPRAGAD-----REVLKQLA-KLKPKRIVYVSCNP  398 (432)
T ss_pred             ccccCCCCEEEECCCCCCCC-----HHHHHHHH-hcCCCcEEEEeCCH
Confidence            1 124789999988754432     34455553 45677777655543

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.37  E-value=8.8e-07  Score=83.24  Aligned_cols=105  Identities=24%  Similarity=0.157  Sum_probs=73.7

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      ...++||.|||-|..+..+...-+.+|-.||+. ..++.|++.+.. +.....++++..++++.++.  .+||+|.+-|+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~-~~~~v~~~~~~gLQ~f~P~~--~~YDlIW~QW~  131 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK-DNPRVGEFYCVGLQDFTPEE--GKYDLIWIQWC  131 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC-GGCCEEEEEES-GGG----T--T-EEEEEEES-
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc-cCCCcceEEecCHhhccCCC--CcEeEEEehHh
Confidence            356999999999999986644447899999999 699999987654 12234678888888876554  79999999998


Q ss_pred             ccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      .-+|..+ ++-.++..+...|+|+|.++.-
T Consensus       132 lghLTD~-dlv~fL~RCk~~L~~~G~IvvK  160 (218)
T PF05891_consen  132 LGHLTDE-DLVAFLKRCKQALKPNGVIVVK  160 (218)
T ss_dssp             GGGS-HH-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hccCCHH-HHHHHHHHHHHhCcCCcEEEEE
Confidence            7667654 5677889999999999998843

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK04148 hypothetical protein; Provisional

Probab=98.36  E-value=2.5e-06  Score=74.60  Aligned_cols=76  Identities=22%  Similarity=0.251  Sum_probs=56.7

Q ss_pred             HHHhcCCCCCCCEEEEECCcccH-HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGI-LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~-ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      .|..+....++.+|||||||+|. ++..+++.|. .|+|+|++ ..++.|+++    +    +.++.+|+.+-.+.- -+
T Consensus         7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~-y~   76 (134)
T PRK04148          7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEI-YK   76 (134)
T ss_pred             HHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHH-Hh
Confidence            34333444567899999999996 9999999887 99999999 577777654    2    688999988753321 16


Q ss_pred             eeeEEEEe
Q psy14674        147 KVDIIISE  154 (519)
Q Consensus       147 ~~D~Ivs~  154 (519)
                      .+|+|.|-
T Consensus        77 ~a~liysi   84 (134)
T PRK04148         77 NAKLIYSI   84 (134)
T ss_pred             cCCEEEEe
Confidence            79999883

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.36  E-value=2.2e-06  Score=82.27  Aligned_cols=108  Identities=24%  Similarity=0.186  Sum_probs=81.3

Q ss_pred             CEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEEEec
Q psy14674         80 KIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIIISEW  155 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Ivs~~  155 (519)
                      ..+||||||.|.....+|+. +...++|||+. +.+..|.+.+.+.++. ++.+++.|+.++  .++. +++.|-|+...
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~-~~sl~~I~i~F  127 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP-DGSLDKIYINF  127 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC-CCCeeEEEEEC
Confidence            58999999999888877766 77799999999 7888898999999986 499999999876  2222 15888887755


Q ss_pred             cccccc--c---chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLF--Y---ESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~--~---e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ..-..-  |   .-....+++...+.|+|||.+...+-.
T Consensus       128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~  166 (227)
T COG0220         128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN  166 (227)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence            422221  1   112346788889999999998765543

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.33  E-value=1.5e-06  Score=79.55  Aligned_cols=105  Identities=21%  Similarity=0.384  Sum_probs=79.3

Q ss_pred             HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCC
Q psy14674         66 YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFG  144 (519)
Q Consensus        66 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~  144 (519)
                      ..+.|..+.....|++|||+|+|+|..+..++++|++.|++.|+.+ ..+.++-|++.||..  |.+...|...  -+  
T Consensus        67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~~--  140 (218)
T COG3897          67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--SP--  140 (218)
T ss_pred             HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--CC--
Confidence            4456667778889999999999999999999999999999999995 777888899999975  7888877754  22  


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhcccCcCe
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNG  181 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG  181 (519)
                       ..+|+|+..-+   ..+...-..++. +.+.|+..|
T Consensus       141 -~~~Dl~LagDl---fy~~~~a~~l~~-~~~~l~~~g  172 (218)
T COG3897         141 -PAFDLLLAGDL---FYNHTEADRLIP-WKDRLAEAG  172 (218)
T ss_pred             -cceeEEEeece---ecCchHHHHHHH-HHHHHHhCC
Confidence             68999987544   333334445555 444454444

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.32  E-value=5.5e-06  Score=80.72  Aligned_cols=123  Identities=15%  Similarity=0.150  Sum_probs=91.9

Q ss_pred             HHHHHhcCCCCCCCEEEEECCcccHHHHHHHH-cC--CCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEee-c
Q psy14674         67 RNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK-SG--AARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVE-L  141 (519)
Q Consensus        67 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~-~g--~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~  141 (519)
                      ..+|.....-...-+||||.||.|...+-+.. .+  ..+|.-.|.|+ .++..++.+++.|+.+.++|.++|+.+.. +
T Consensus       124 ~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l  203 (311)
T PF12147_consen  124 RQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSL  203 (311)
T ss_pred             HHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHh
Confidence            33443333334567999999999987665544 33  36899999994 89999999999999998899999987751 2


Q ss_pred             CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ..-..+.++++.+.+...+....++...+..+.+.+.|||++|-..-.
T Consensus       204 ~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQP  251 (311)
T PF12147_consen  204 AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQP  251 (311)
T ss_pred             hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            211146799988887666666566777889999999999999955433

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=2.5e-06  Score=82.90  Aligned_cols=84  Identities=24%  Similarity=0.299  Sum_probs=69.0

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .|.....+.++..|||||+|.|.++..+++.+. +|+|+|++ .+++..++...   ..++++++++|+...+++... .
T Consensus        21 kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l~-~   95 (259)
T COG0030          21 KIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSLA-Q   95 (259)
T ss_pred             HHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhhc-C
Confidence            455566777799999999999999999999966 89999999 58888888765   345699999999998887311 6


Q ss_pred             eeEEEEeccc
Q psy14674        148 VDIIISEWMG  157 (519)
Q Consensus       148 ~D~Ivs~~~~  157 (519)
                      ++.||++...
T Consensus        96 ~~~vVaNlPY  105 (259)
T COG0030          96 PYKVVANLPY  105 (259)
T ss_pred             CCEEEEcCCC
Confidence            8999998763

>KOG2940|consensus

Probab=98.31  E-value=6.5e-07  Score=83.48  Aligned_cols=100  Identities=20%  Similarity=0.367  Sum_probs=79.4

Q ss_pred             CCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc
Q psy14674         79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG  157 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~  157 (519)
                      ...++|||||-|.++..+...|..+++-+|.| .|++.++.. +++++.  +....+|-+.+++.+  .++|+|+++.. 
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~--~~~~v~DEE~Ldf~e--ns~DLiisSls-  146 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIE--TSYFVGDEEFLDFKE--NSVDLIISSLS-  146 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceE--EEEEecchhcccccc--cchhhhhhhhh-
Confidence            45899999999999999998899999999999 799888763 334442  566777877766555  89999999776 


Q ss_pred             cccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        158 YCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       158 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                        +++..+++.....++..|||+|.++-+
T Consensus       147 --lHW~NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  147 --LHWTNDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             --hhhhccCchHHHHHHHhcCCCccchhH
Confidence              444456777777888999999999844

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.29  E-value=1.3e-06  Score=79.23  Aligned_cols=76  Identities=25%  Similarity=0.306  Sum_probs=56.0

Q ss_pred             CEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce-eeEEEEecc
Q psy14674         80 KIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK-VDIIISEWM  156 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-~D~Ivs~~~  156 (519)
                      ..|+|+.||.|..+..+|+. ..+|+|||++ ..++.|+.+++-.|+.++|+++++|+.++........ +|+|+.++.
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP   78 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP   78 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred             CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence            37999999999999999998 4599999999 5999999999999999999999999988632210022 899998775

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.28  E-value=3.1e-06  Score=79.58  Aligned_cols=109  Identities=20%  Similarity=0.331  Sum_probs=67.7

Q ss_pred             CCCEEEEECCccc----HHHHHHHHc---CC---CEEEEEech-HHHHHHHHHH--------------HH-----C--C-
Q psy14674         78 KGKIVLDIGCGTG----ILSMFAAKS---GA---ARVIGIECS-NIVEYAKEIV--------------DK-----N--N-  124 (519)
Q Consensus        78 ~~~~VLDiGcGtG----~ls~~la~~---g~---~~V~gvD~s-~~~~~A~~~~--------------~~-----~--~-  124 (519)
                      +.-+|+.+||+||    .+++.+.+.   ..   -+|+|+|+| .+++.|++-+              ++     .  + 
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            4569999999999    366666662   12   389999999 6999987632              00     0  0 


Q ss_pred             -----CCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        125 -----LSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       125 -----~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                           +.++|+|.+.|+.+...+.  ++||+|+|.-+..++. +.....+++.+.+.|+|||+++.....
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~--~~fD~I~CRNVlIYF~-~~~~~~vl~~l~~~L~pgG~L~lG~sE  177 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPF--GRFDLIFCRNVLIYFD-PETQQRVLRRLHRSLKPGGYLFLGHSE  177 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S--------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred             eEChHHcCceEEEecccCCCCccc--CCccEEEecCEEEEeC-HHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence                 1236889999988722222  7999999965544343 445688899999999999999977665

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.28  E-value=1.9e-06  Score=82.94  Aligned_cols=96  Identities=25%  Similarity=0.209  Sum_probs=69.5

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      ...++||||+|.|..+..++.. .++|++.|.| .|...    +++.|+    +++.  ..++.-.  +.+||+|.|--+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~r----L~~kg~----~vl~--~~~w~~~--~~~fDvIscLNv  160 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWR----LSKKGF----TVLD--IDDWQQT--DFKFDVISCLNV  160 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHH----HHhCCC----eEEe--hhhhhcc--CCceEEEeehhh
Confidence            4568999999999999999887 6699999999 57544    334453    3332  2223212  268999988443


Q ss_pred             ccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                         +..-.....+++.+++.|+|+|+++....-
T Consensus       161 ---LDRc~~P~~LL~~i~~~l~p~G~lilAvVl  190 (265)
T PF05219_consen  161 ---LDRCDRPLTLLRDIRRALKPNGRLILAVVL  190 (265)
T ss_pred             ---hhccCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence               444455778899999999999999876654

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG1661|consensus

Probab=98.28  E-value=1.6e-06  Score=80.11  Aligned_cols=99  Identities=29%  Similarity=0.372  Sum_probs=72.2

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc-C--CCEEEEEech-HHHHHHHHHHHHCC--------C-CCcEEEEEceeeEeec
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS-G--AARVIGIECS-NIVEYAKEIVDKNN--------L-SDVVTILKGKVEEVEL  141 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~-g--~~~V~gvD~s-~~~~~A~~~~~~~~--------~-~~~i~~~~~d~~~~~~  141 (519)
                      .+.+|.+.||+|+|||+|+..+++. |  ...+.|||.- ++++.+++++.+.-        + ..++.++.+|......
T Consensus        79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~  158 (237)
T KOG1661|consen   79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA  158 (237)
T ss_pred             hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence            4789999999999999999988865 3  2245999988 79999999986543        1 2357889999988755


Q ss_pred             CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +.  .+||.|.+-...     ....+.    +...|+|||.++
T Consensus       159 e~--a~YDaIhvGAaa-----~~~pq~----l~dqL~~gGrll  190 (237)
T KOG1661|consen  159 EQ--APYDAIHVGAAA-----SELPQE----LLDQLKPGGRLL  190 (237)
T ss_pred             cc--CCcceEEEccCc-----cccHHH----HHHhhccCCeEE
Confidence            54  899999875321     122333    335677877666

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.26  E-value=1.5e-06  Score=86.31  Aligned_cols=109  Identities=17%  Similarity=0.180  Sum_probs=77.5

Q ss_pred             CCEEEEECCccc----HHHHHHHHcC-----CCEEEEEech-HHHHHHHHHH------------------HH-----CC-
Q psy14674         79 GKIVLDIGCGTG----ILSMFAAKSG-----AARVIGIECS-NIVEYAKEIV------------------DK-----NN-  124 (519)
Q Consensus        79 ~~~VLDiGcGtG----~ls~~la~~g-----~~~V~gvD~s-~~~~~A~~~~------------------~~-----~~-  124 (519)
                      .-+|+..||+||    .+++.+.+.+     .-+|+|+|+| .+++.|++-+                  ..     .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            369999999999    3566666541     2479999999 6999988752                  00     01 


Q ss_pred             ------CCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        125 ------LSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       125 ------~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                            +.+.|+|.+.|+.+.+.+. .++||+|+|.-+..++. ......++..+.+.|+|||+++.....
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~-~~~fD~I~cRNvliyF~-~~~~~~vl~~l~~~L~pgG~L~lG~sE  264 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAV-PGPFDAIFCRNVMIYFD-KTTQERILRRFVPLLKPDGLLFAGHSE  264 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCcc-CCCcceeeHhhHHhcCC-HHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence                  2345788888887643331 27899999965544343 345788899999999999999866654

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.24  E-value=2.7e-06  Score=87.84  Aligned_cols=102  Identities=19%  Similarity=0.151  Sum_probs=80.5

Q ss_pred             CCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         79 GKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      +.+|||+.||+|..++.++..  |+++|+++|++ ++++.+++|++.|++. +++++++|+..+-.. ...+||+|+.++
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~-~~~~fDvIdlDP  122 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRY-RNRKFHVIDIDP  122 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHH-hCCCCCEEEeCC
Confidence            458999999999999999886  78899999999 6999999999999886 488999998876221 115799999887


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .+       ....+++.+.+.+++||++......
T Consensus       123 fG-------s~~~fld~al~~~~~~glL~vTaTD  149 (374)
T TIGR00308       123 FG-------TPAPFVDSAIQASAERGLLLVTATD  149 (374)
T ss_pred             CC-------CcHHHHHHHHHhcccCCEEEEEecc
Confidence            42       1224566666788999998876433

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.22  E-value=3.2e-06  Score=82.63  Aligned_cols=111  Identities=21%  Similarity=0.152  Sum_probs=80.8

Q ss_pred             CCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCC---CCcEEEEEceeeEeecCCCCc-eeeEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNL---SDVVTILKGKVEEVELPFGIQ-KVDII  151 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~-~~D~I  151 (519)
                      ++++||-||-|.|..+..+.+.. ..+|++||++ .+++.|++.......   ..|++++.+|...+-... .+ +||+|
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-~~~~yDvI  154 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-QEEKYDVI  154 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-SST-EEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-cCCcccEE
Confidence            68899999999999999998885 6799999999 589999998764322   367999999998762221 14 89999


Q ss_pred             EEeccccccccc-hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        152 ISEWMGYCLFYE-SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       152 vs~~~~~~l~~e-~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.+......... -.-..+++.+++.|+|||+++.....
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~  193 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS  193 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence            997754211111 12356788889999999999976544

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.19  E-value=5.2e-06  Score=77.68  Aligned_cols=103  Identities=20%  Similarity=0.246  Sum_probs=76.3

Q ss_pred             EEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC------CCceeeEEE
Q psy14674         81 IVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF------GIQKVDIII  152 (519)
Q Consensus        81 ~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~------~~~~~D~Iv  152 (519)
                      +|||||||||.-+.++|++ +.-.-.-.|.. ....-.+..+...++++...-+..|+.+-..+.      ..++||+|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            6999999999998888876 55566677887 455666777777777665455666665542222      125899999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      |.-+.|...++ ..+.++....++|++||.++
T Consensus       108 ~~N~lHI~p~~-~~~~lf~~a~~~L~~gG~L~  138 (204)
T PF06080_consen  108 CINMLHISPWS-AVEGLFAGAARLLKPGGLLF  138 (204)
T ss_pred             ehhHHHhcCHH-HHHHHHHHHHHhCCCCCEEE
Confidence            98887766654 56788899999999999988

The function of this family is unknown.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.18  E-value=5.4e-06  Score=85.43  Aligned_cols=87  Identities=33%  Similarity=0.423  Sum_probs=59.0

Q ss_pred             HhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------
Q psy14674         71 YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------  141 (519)
Q Consensus        71 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------  141 (519)
                      .......++ .|||+-||.|.+++.+|+. +++|+|||.+ ++++.|+++++.|++.+ ++|+.++++++..        
T Consensus       190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~~~~~~r~~  266 (352)
T PF05958_consen  190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAKALAKAREF  266 (352)
T ss_dssp             HHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCCHHCCS-GG
T ss_pred             HHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhHHHHhhHHH
Confidence            344444455 8999999999999999987 5599999999 69999999999999975 9999988765411        


Q ss_pred             ---C---CCCceeeEEEEecccccc
Q psy14674        142 ---P---FGIQKVDIIISEWMGYCL  160 (519)
Q Consensus       142 ---~---~~~~~~D~Ivs~~~~~~l  160 (519)
                         .   .....+|+|+.++.-.++
T Consensus       267 ~~~~~~~~~~~~~d~vilDPPR~G~  291 (352)
T PF05958_consen  267 NRLKGIDLKSFKFDAVILDPPRAGL  291 (352)
T ss_dssp             TTGGGS-GGCTTESEEEE---TT-S
T ss_pred             HhhhhhhhhhcCCCEEEEcCCCCCc
Confidence               0   001368999998875444

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>KOG2915|consensus

Probab=98.17  E-value=1.2e-05  Score=77.21  Aligned_cols=108  Identities=21%  Similarity=0.245  Sum_probs=84.8

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI  145 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  145 (519)
                      .|+....+.+|.+||+-|+|+|.++.+++++  +-++++..|.. .-++.|++-.++.|+.+++++.+.|+....+....
T Consensus        96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks  175 (314)
T KOG2915|consen   96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKS  175 (314)
T ss_pred             HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccc
Confidence            3455578899999999999999999999997  56799999999 58899999999999999999999999887665544


Q ss_pred             ceeeEEEEeccccccccchhHHHHHHHHhcccCcCe-EEE
Q psy14674        146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNG-LLF  184 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG-~li  184 (519)
                      ..+|.|+.+..   -.+    .++ --+...||.+| +++
T Consensus       176 ~~aDaVFLDlP---aPw----~Ai-Pha~~~lk~~g~r~c  207 (314)
T KOG2915|consen  176 LKADAVFLDLP---APW----EAI-PHAAKILKDEGGRLC  207 (314)
T ss_pred             cccceEEEcCC---Chh----hhh-hhhHHHhhhcCceEE
Confidence            78999987764   122    222 22234777766 444

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.14  E-value=1.4e-05  Score=75.81  Aligned_cols=95  Identities=26%  Similarity=0.370  Sum_probs=75.8

Q ss_pred             CCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce-eeEEEEec
Q psy14674         79 GKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK-VDIIISEW  155 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-~D~Ivs~~  155 (519)
                      +++++|||+|.|.-++.+|-. +..+|+-+|.. .-+...+....+.+++| ++++++.++++...   .+ ||+|.|..
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~---~~~~D~vtsRA  143 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQE---KKQYDVVTSRA  143 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhcccc---cccCcEEEeeh
Confidence            689999999999888877633 45579999998 57777777778888876 99999999987543   23 99999988


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +.       .+..+..-+..++|+||.++
T Consensus       144 va-------~L~~l~e~~~pllk~~g~~~  165 (215)
T COG0357         144 VA-------SLNVLLELCLPLLKVGGGFL  165 (215)
T ss_pred             cc-------chHHHHHHHHHhcccCCcch
Confidence            72       35566666779999999875

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.11  E-value=1e-05  Score=76.69  Aligned_cols=111  Identities=18%  Similarity=0.274  Sum_probs=62.0

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHH-cCCCEEEEEech-HHHHHHHH-------HHHHCCC-CCcEEEEEceeeEe
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAK-SGAARVIGIECS-NIVEYAKE-------IVDKNNL-SDVVTILKGKVEEV  139 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s-~~~~~A~~-------~~~~~~~-~~~i~~~~~d~~~~  139 (519)
                      |++...+.++...+|||||.|.....+|. .+.++++|||+. ...+.|+.       .++..|. ..++++.++|+.+.
T Consensus        34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~  113 (205)
T PF08123_consen   34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP  113 (205)
T ss_dssp             HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred             HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence            44456678899999999999988776664 488889999998 45555543       2333444 34688888887653


Q ss_pred             ecCCC-CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        140 ELPFG-IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       140 ~~~~~-~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +.... -...|+|+++..   ...+. +..-+..+...||+|.++|
T Consensus       114 ~~~~~~~s~AdvVf~Nn~---~F~~~-l~~~L~~~~~~lk~G~~II  155 (205)
T PF08123_consen  114 DFVKDIWSDADVVFVNNT---CFDPD-LNLALAELLLELKPGARII  155 (205)
T ss_dssp             HHHHHHGHC-SEEEE--T---TT-HH-HHHHHHHHHTTS-TT-EEE
T ss_pred             HhHhhhhcCCCEEEEecc---ccCHH-HHHHHHHHHhcCCCCCEEE
Confidence            21100 035799998765   23333 4444566667889998887

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.09  E-value=2.2e-05  Score=77.91  Aligned_cols=111  Identities=22%  Similarity=0.196  Sum_probs=84.9

Q ss_pred             CEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCC--C-CCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         80 KIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNN--L-SDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ++||-||-|.|..+..+.+.. ..+++.||++ .+++.|++.+....  . ..|++++.+|..++--.. .++||+|+.+
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-~~~fDvIi~D  156 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-EEKFDVIIVD  156 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-CCcCCEEEEc
Confidence            699999999999999999984 6799999999 59999999875432  2 378999999988762211 1589999997


Q ss_pred             ccccccccch-hHHHHHHHHhcccCcCeEEEccCCccc
Q psy14674        155 WMGYCLFYES-MLDTVLYARDKWLATNGLLFPDKASLF  191 (519)
Q Consensus       155 ~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~~~  191 (519)
                      .....-..+. .-..+.+.+++.|+++|+++-+..+.+
T Consensus       157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~  194 (282)
T COG0421         157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPF  194 (282)
T ss_pred             CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcc
Confidence            6543211111 135678889999999999998866643

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.06  E-value=1.4e-05  Score=78.61  Aligned_cols=109  Identities=17%  Similarity=0.254  Sum_probs=74.2

Q ss_pred             CCCEEEEECCccc----HHHHHHHHcC------CCEEEEEech-HHHHHHHHHHHH-----CCC----------------
Q psy14674         78 KGKIVLDIGCGTG----ILSMFAAKSG------AARVIGIECS-NIVEYAKEIVDK-----NNL----------------  125 (519)
Q Consensus        78 ~~~~VLDiGcGtG----~ls~~la~~g------~~~V~gvD~s-~~~~~A~~~~~~-----~~~----------------  125 (519)
                      ..-+|+-+||+||    .+++.+.+.+      .-+|+|.|+| .+++.|++-+=.     .++                
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            3569999999999    4666666653      3489999999 689888753211     111                


Q ss_pred             -------CCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        126 -------SDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       126 -------~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                             ...|.|-..|+.+-...  .+.||+|+|--+.-++. +.....++...+..|+|||.++.-...
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~--~~~fD~IfCRNVLIYFd-~~~q~~il~~f~~~L~~gG~LflG~sE  243 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPF--LGKFDLIFCRNVLIYFD-EETQERILRRFADSLKPGGLLFLGHSE  243 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccc--cCCCCEEEEcceEEeeC-HHHHHHHHHHHHHHhCCCCEEEEccCc
Confidence                   12356666666554312  27899999954433333 455778899999999999999865544

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=1.5e-05  Score=75.66  Aligned_cols=108  Identities=22%  Similarity=0.220  Sum_probs=76.8

Q ss_pred             HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHH-HHHHHHHHCCCCCcEE-EEEceeeEeec
Q psy14674         65 TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVE-YAKEIVDKNNLSDVVT-ILKGKVEEVEL  141 (519)
Q Consensus        65 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~-~A~~~~~~~~~~~~i~-~~~~d~~~~~~  141 (519)
                      ....++....-..+|+++||||+-||.++..+.+.||++|||+|.. ..+. ..|.       ..|+. +..-|+..+..
T Consensus        66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-------d~rV~~~E~tN~r~l~~  138 (245)
T COG1189          66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-------DPRVIVLERTNVRYLTP  138 (245)
T ss_pred             HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-------CCcEEEEecCChhhCCH
Confidence            3445565556678899999999999999999999999999999998 5333 3222       22343 44456665543


Q ss_pred             CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .+-.+..|+++++...  +    .+..++.++..+|+|+|.+++
T Consensus       139 ~~~~~~~d~~v~DvSF--I----SL~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         139 EDFTEKPDLIVIDVSF--I----SLKLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             HHcccCCCeEEEEeeh--h----hHHHHHHHHHHhcCCCceEEE
Confidence            3323578999997641  1    256778888899999998773

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.02  E-value=3.4e-05  Score=68.92  Aligned_cols=106  Identities=23%  Similarity=0.190  Sum_probs=76.9

Q ss_pred             cCCCCCCCEEEEECCcccHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCC-CCc
Q psy14674         73 NKHLFKGKIVLDIGCGTGILSMFAAKSG--AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPF-GIQ  146 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~-~~~  146 (519)
                      ......|.-|||+|.|||.++..+.++|  ...++++|.| +......+....      +.++.||+.++.  +.. .+.
T Consensus        43 ~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~------~~ii~gda~~l~~~l~e~~gq  116 (194)
T COG3963          43 VIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG------VNIINGDAFDLRTTLGEHKGQ  116 (194)
T ss_pred             ccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC------ccccccchhhHHHHHhhcCCC
Confidence            3456678899999999999999888886  3479999999 688777766433      678999988774  221 126


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .||.|||....-.+.. ...-++++.+...|..||.++-
T Consensus       117 ~~D~viS~lPll~~P~-~~~iaile~~~~rl~~gg~lvq  154 (194)
T COG3963         117 FFDSVISGLPLLNFPM-HRRIAILESLLYRLPAGGPLVQ  154 (194)
T ss_pred             eeeeEEeccccccCcH-HHHHHHHHHHHHhcCCCCeEEE
Confidence            7999999654221211 2234567777788999998883

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.00  E-value=1e-05  Score=75.28  Aligned_cols=98  Identities=26%  Similarity=0.375  Sum_probs=60.7

Q ss_pred             CCCEEEEECCcccHHHHHHHHcC--CCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCCCce
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSG--AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFGIQK  147 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~~  147 (519)
                      ++.+|||+||++|.++..+.+.+  ..+|+|+|+.++          ... ..+..+++|+.+..        ++...++
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence            34899999999999999999997  679999999854          111 23677778876542        1111258


Q ss_pred             eeEEEEecccccccc----c----hhHHHHHHHHhcccCcCeEEEcc
Q psy14674        148 VDIIISEWMGYCLFY----E----SMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~----e----~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +|+|+|+........    +    ......+..+.++|+|||.++.-
T Consensus        92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K  138 (181)
T PF01728_consen   92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK  138 (181)
T ss_dssp             ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence            999999873221111    1    11222233444779999987743

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.95  E-value=3.2e-05  Score=83.48  Aligned_cols=109  Identities=23%  Similarity=0.249  Sum_probs=79.4

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIIIS  153 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Ivs  153 (519)
                      .+..+||||||.|.+...+|+. +...++|+|++ +.+..|.+.+...++.| +.++.+|+..+  .++.  +++|.|+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~--~sv~~i~i  423 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPN--NSLDGIYI  423 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCc--ccccEEEE
Confidence            4679999999999988877776 66789999999 67777777777788865 88888887543  2444  78999987


Q ss_pred             eccccccc-----cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        154 EWMGYCLF-----YESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~-----~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ....-..-     ..-.-..+++.+.+.|||||.+...+-.
T Consensus       424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~  464 (506)
T PRK01544        424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI  464 (506)
T ss_pred             ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence            65432221     1112346788889999999988755543

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.95  E-value=2.4e-05  Score=78.52  Aligned_cols=88  Identities=17%  Similarity=0.258  Sum_probs=66.4

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      +.+|.++|||||++|.++..+++.|+ +|+|||..+|.....    .   ..+|+.+.+|......+.  +.+|+++|+.
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L~----~---~~~V~h~~~d~fr~~p~~--~~vDwvVcDm  278 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSLM----D---TGQVEHLRADGFKFRPPR--KNVDWLVCDM  278 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhhh----C---CCCEEEEeccCcccCCCC--CCCCEEEEec
Confidence            57899999999999999999999998 999999777554322    1   245888888887664323  7899999987


Q ss_pred             cccccccchhHHHHHHHHhcccCcC
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATN  180 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~Lkpg  180 (519)
                      ..       ....+..-+.++|..|
T Consensus       279 ve-------~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        279 VE-------KPARVAELMAQWLVNG  296 (357)
T ss_pred             cc-------CHHHHHHHHHHHHhcC
Confidence            61       2345556666777665

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.94  E-value=4.1e-05  Score=72.54  Aligned_cols=96  Identities=33%  Similarity=0.427  Sum_probs=67.4

Q ss_pred             EEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccc
Q psy14674         82 VLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYC  159 (519)
Q Consensus        82 VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~  159 (519)
                      |.||||--|.++..|.+.| +.+++|+|++ .-++.|+++++.+|+.++|++..+|..+. ++.+ +..|.|+...||-.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~-e~~d~ivIAGMGG~   78 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPG-EDVDTIVIAGMGGE   78 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GG-G---EEEEEEE-HH
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCC-CCCCEEEEecCCHH
Confidence            6899999999999999997 5579999999 58999999999999999999999997653 3320 34899988777543


Q ss_pred             cccchhHHHHHHHHhcccCcCeEEE
Q psy14674        160 LFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       160 l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +     ...++++....++....+|
T Consensus        79 l-----I~~ILe~~~~~~~~~~~lI   98 (205)
T PF04816_consen   79 L-----IIEILEAGPEKLSSAKRLI   98 (205)
T ss_dssp             H-----HHHHHHHTGGGGTT--EEE
T ss_pred             H-----HHHHHHhhHHHhccCCeEE
Confidence            2     4556666655565544555

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.92  E-value=2.4e-05  Score=78.01  Aligned_cols=81  Identities=22%  Similarity=0.247  Sum_probs=64.1

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCc
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKSG--AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQ  146 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~  146 (519)
                      ......++..+||.+||.|..+..+++..  ..+|+|+|.+ +|++.|++++..   .+++++++++..++.  ++.+..
T Consensus        13 ~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~   89 (296)
T PRK00050         13 DALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLG   89 (296)
T ss_pred             HhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCC
Confidence            33455678899999999999999998873  4699999999 699999988754   467999999998862  221112


Q ss_pred             eeeEEEEec
Q psy14674        147 KVDIIISEW  155 (519)
Q Consensus       147 ~~D~Ivs~~  155 (519)
                      ++|.|+.+.
T Consensus        90 ~vDgIl~DL   98 (296)
T PRK00050         90 KVDGILLDL   98 (296)
T ss_pred             ccCEEEECC
Confidence            799999865

>KOG2187|consensus

Probab=97.91  E-value=1.1e-05  Score=84.00  Aligned_cols=75  Identities=31%  Similarity=0.474  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe
Q psy14674         63 TMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV  139 (519)
Q Consensus        63 ~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~  139 (519)
                      .+.+...|.+...+..++.+||+-||||.+++.+|+. +++|+|||++ +.++.|+++++.||+.+ .+|++|-++++
T Consensus       368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~  443 (534)
T KOG2187|consen  368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDL  443 (534)
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhhc
Confidence            3444456666778888999999999999999999875 8899999999 69999999999999987 89999977765

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.90  E-value=2.3e-05  Score=73.07  Aligned_cols=91  Identities=18%  Similarity=0.245  Sum_probs=55.2

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ...++..|-|+|||.+.++..+. .+ .+|...|+-.          .|   +  .++.+|+..+++++  +.+|++|+.
T Consensus        69 ~~~~~~viaD~GCGdA~la~~~~-~~-~~V~SfDLva----------~n---~--~Vtacdia~vPL~~--~svDv~Vfc  129 (219)
T PF05148_consen   69 KRPKSLVIADFGCGDAKLAKAVP-NK-HKVHSFDLVA----------PN---P--RVTACDIANVPLED--ESVDVAVFC  129 (219)
T ss_dssp             TS-TTS-EEEES-TT-HHHHH---S----EEEEESS-----------SS---T--TEEES-TTS-S--T--T-EEEEEEE
T ss_pred             hcCCCEEEEECCCchHHHHHhcc-cC-ceEEEeeccC----------CC---C--CEEEecCccCcCCC--CceeEEEEE
Confidence            44556799999999999985543 22 3799999852          11   2  46779999888887  899999986


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      ..   |-+ ..+..++.+..|+|||||.+...-.
T Consensus       130 LS---LMG-Tn~~~fi~EA~RvLK~~G~L~IAEV  159 (219)
T PF05148_consen  130 LS---LMG-TNWPDFIREANRVLKPGGILKIAEV  159 (219)
T ss_dssp             S------S-S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hh---hhC-CCcHHHHHHHHheeccCcEEEEEEe
Confidence            54   222 2466778888999999999874433

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.89  E-value=6.5e-06  Score=69.50  Aligned_cols=99  Identities=27%  Similarity=0.360  Sum_probs=43.8

Q ss_pred             EEECCcccHHHHHHHHc----CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEEEecc
Q psy14674         83 LDIGCGTGILSMFAAKS----GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIIISEWM  156 (519)
Q Consensus        83 LDiGcGtG~ls~~la~~----g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Ivs~~~  156 (519)
                      ||||+..|..+..+++.    +..+++++|..+..+.+++.++..++.++++++.++..+.  .++.  +++|+|+.+.-
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~--~~~dli~iDg~   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPD--GPIDLIFIDGD   78 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH----EEEEEEES-
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCC--CCEEEEEECCC
Confidence            68999999887776654    2248999999964556666776677888899999998765  2332  68999988763


Q ss_pred             ccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                         ..++ .....+..+.+.|+|||+++.+.
T Consensus        79 ---H~~~-~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   79 ---HSYE-AVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             -----HH-HHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             ---CCHH-HHHHHHHHHHHHcCCCeEEEEeC
Confidence               1122 33444667778999999998764

>PRK00536 speE spermidine synthase; Provisional

Probab=97.87  E-value=0.0001  Score=72.31  Aligned_cols=101  Identities=16%  Similarity=0.010  Sum_probs=75.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC--CC-CCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN--NL-SDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~--~~-~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ...++||-||.|-|..+..+.+... +|+-||++ ++++.+++.....  ++ ..|++++.. +.  ....  ++||+||
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~--~~fDVII  144 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDI--KKYDLII  144 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccC--CcCCEEE
Confidence            5578999999999999999999964 99999999 6999999854321  22 346777752 11  1111  6899999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCCccc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLF  191 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~  191 (519)
                      .+..    .    -..+.+.+++.|+|||+++-...+.+
T Consensus       145 vDs~----~----~~~fy~~~~~~L~~~Gi~v~Qs~sp~  175 (262)
T PRK00536        145 CLQE----P----DIHKIDGLKRMLKEDGVFISVAKHPL  175 (262)
T ss_pred             EcCC----C----ChHHHHHHHHhcCCCcEEEECCCCcc
Confidence            9853    1    13456778899999999998877743

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.85  E-value=1.5e-05  Score=83.13  Aligned_cols=101  Identities=15%  Similarity=0.346  Sum_probs=63.6

Q ss_pred             CEEEEECCcccHHHHHHHHcCCCEEEEEech---H-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         80 KIVLDIGCGTGILSMFAAKSGAARVIGIECS---N-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s---~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++||+|||+|.++..+...+. .+..+-..   + .++.|.+    .|+..-+.++  -...+++|+  +.||+|.|.-
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfale----RGvpa~~~~~--~s~rLPfp~--~~fDmvHcsr  189 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALE----RGVPAMIGVL--GSQRLPFPS--NAFDMVHCSR  189 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhh----cCcchhhhhh--ccccccCCc--cchhhhhccc
Confidence            4899999999999999988865 33333332   2 4444443    3444222211  234556666  8999999854


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccCCccc
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLF  191 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~  191 (519)
                      ...  .+...-..++-++.|+|+|||+++-+...++
T Consensus       190 c~i--~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  190 CLI--PWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             ccc--cchhcccceeehhhhhhccCceEEecCCccc
Confidence            321  1111113467788999999999997766644

; GO: 0008168 methyltransferase activity

>KOG1501|consensus

Probab=97.83  E-value=2.1e-05  Score=79.89  Aligned_cols=212  Identities=13%  Similarity=0.078  Sum_probs=122.6

Q ss_pred             CCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc--cccccch-hHHHHHHHHhcc
Q psy14674        101 AARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG--YCLFYES-MLDTVLYARDKW  176 (519)
Q Consensus       101 ~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~--~~l~~e~-~l~~~l~~~~r~  176 (519)
                      ..+++-.+.++ .-....+++-...+.+ ++.+..=   +..+   ++.|++.++++.  ....+.. ..-....++...
T Consensus       389 ~~~r~~~~l~e~~r~if~~~~~~~Klsn-~e~vp~i---~t~~---ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~  461 (636)
T KOG1501|consen  389 WPKRIQARLSERERVIFNQRLIQLKLSN-NESVPAI---MTSP---DSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMM  461 (636)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhcc-cccchhh---hcCC---CCCceeecchhhhhccCchhheeeeeeHHHHHHh
Confidence            45666677774 3334444444433332 2222111   1234   355877766641  1111111 111224555677


Q ss_pred             cCcCeEEEccCCcccccccccccCCCcccccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhhhhhh--
Q psy14674        177 LATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAI--  254 (519)
Q Consensus       177 LkpgG~lip~~~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~--  254 (519)
                      +-|+-.+-|..+.+-+.+                              .+-+++..-. .-...+.|||++.|.++..  
T Consensus       462 ~G~~~~V~P~~~~L~Ai~------------------------------~kF~DL~~I~-S~~G~~~GFDl~~~Dei~~kA  510 (636)
T KOG1501|consen  462 HGDELRVEPHMGVLKAIP------------------------------EKFEDLQNIA-SDVGTVNGFDLSFFDEISTKA  510 (636)
T ss_pred             cCCceeeccccchhhhhh------------------------------HHHHHHHhhc-ccccccccceeeehhHHHHhh
Confidence            889989989998844333                              2222222111 1235788999998866532  


Q ss_pred             ---------cCCcccccCCCCcccCCceEEEEecCCCCCCCceeeeeEEEEEEecceeeEEEEEEEEEEcCCCCceEEec
Q psy14674        255 ---------KEPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFST  325 (519)
Q Consensus       255 ---------~~~~v~~~~~~~~ls~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~~~v~lsT  325 (519)
                               ..|++++  |..+++++.+++.||+...-..+     .-.+.+.+.|.-||+.+|++++|.    ++.|||
T Consensus       511 ~~~~da~~~E~~LWEY--~~~~~~d~~eIL~F~~~~~V~~Q-----k~~V~i~~~~sS~A~~mWME~~~~----~~nLST  579 (636)
T KOG1501|consen  511 RTATDAIVDEQSLWEY--AGIVKGDAVEILRFPIDGRVSSQ-----KCVVNIDNMSSSNAIPMWMEWEFG----GINLST  579 (636)
T ss_pred             chhhhhhhccchhhhc--cCeecCCceeEEEeccCCccccc-----eeEEEccCCCccccceeeEEeeeC----ceeecc
Confidence                     2244544  66788999999999997543222     445677899999999999999996    467777


Q ss_pred             CCCC--------CCCCeeeEEEeeCceeeecCCCEEEEEEEEEeCC
Q psy14674        326 APEA--------HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNP  363 (519)
Q Consensus       326 ~P~~--------~~thW~q~v~~l~~p~~v~~g~~i~~~~~~~~~~  363 (519)
                      +-.+        ...|.||+||+...  .+.....+.....+.++.
T Consensus       580 GLL~~~~~G~~~WN~~~KQ~VYF~~t--~L~~~ksl~~~~~F~~~T  623 (636)
T KOG1501|consen  580 GLLSISSAGVPEWNKGYKQGVYFPIT--ALRNDKSLCLHALFDKST  623 (636)
T ss_pred             cceeecCCCCcccCccccceeEEEhH--HhCCCceEEEEEEEcCCC
Confidence            6532        13566899998732  233334566666666543

>KOG2730|consensus

Probab=97.81  E-value=1.2e-05  Score=74.85  Aligned_cols=101  Identities=21%  Similarity=0.252  Sum_probs=73.4

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEEEe
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIIISE  154 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Ivs~  154 (519)
                      ....|+|.-||.|..+...|..+. .|++||+++ -+..|+.+++-+|++++|+|++||+.++  .+......+|+|+-.
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s  172 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS  172 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence            556899999999988887777766 999999995 8999999999999999999999999876  122111457788764


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeE
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGL  182 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~  182 (519)
                      +.   ..+.+.+..-+..+...++|.|.
T Consensus       173 pp---wggp~y~~~~~~DL~~~~~p~~~  197 (263)
T KOG2730|consen  173 PP---WGGPSYLRADVYDLETHLKPMGT  197 (263)
T ss_pred             CC---CCCcchhhhhhhhhhhhcchhHH
Confidence            43   22233333334445556666643

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.77  E-value=0.00043  Score=68.05  Aligned_cols=103  Identities=21%  Similarity=0.204  Sum_probs=73.7

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH----C-----------------------------
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDK----N-----------------------------  123 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~----~-----------------------------  123 (519)
                      ...+||--|||.|.|+..+|+.|. .+.|.|.| -|+-..+-.+..    +                             
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv  134 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV  134 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence            356999999999999999999988 99999999 575444433221    0                             


Q ss_pred             ------CCCCcEEEEEceeeEeecCC-CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        124 ------NLSDVVTILKGKVEEVELPF-GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       124 ------~~~~~i~~~~~d~~~~~~~~-~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                            ....++....||+.++-.+. ..++||+|++..+   +.--..+-..++.+.++|||||+.|
T Consensus       135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FF---IDTA~Ni~~Yi~tI~~lLkpgG~WI  199 (270)
T PF07942_consen  135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFF---IDTAENIIEYIETIEHLLKPGGYWI  199 (270)
T ss_pred             CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEE---eechHHHHHHHHHHHHHhccCCEEE
Confidence                  00124556667777663221 1268999988754   5555567778899999999999766

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.74  E-value=0.00011  Score=65.61  Aligned_cols=75  Identities=29%  Similarity=0.497  Sum_probs=58.5

Q ss_pred             CCCCCEEEEECCcccHHHHHHHH-----cCCCEEEEEech-HHHHHHHHHHHHCC--CCCcEEEEEceeeEeecCCCCce
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAK-----SGAARVIGIECS-NIVEYAKEIVDKNN--LSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~-----~g~~~V~gvD~s-~~~~~A~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      ..+...|+|+|||.|.++..++.     ....+|+|||.+ .+++.|.++.+..+  +..++++..++..+....   ..
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~   99 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSS---DP   99 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhccc---CC
Confidence            45678999999999999999998     555699999999 68899998888877  555677777766553222   56


Q ss_pred             eeEEEE
Q psy14674        148 VDIIIS  153 (519)
Q Consensus       148 ~D~Ivs  153 (519)
                      .+++++
T Consensus       100 ~~~~vg  105 (141)
T PF13679_consen  100 PDILVG  105 (141)
T ss_pred             CeEEEE
Confidence            677765

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.72  E-value=4.9e-05  Score=71.19  Aligned_cols=99  Identities=21%  Similarity=0.296  Sum_probs=68.2

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc-CC-CEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCC
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS-GA-ARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFG  144 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~  144 (519)
                      -+.++.+|+|||+-.|.++..+++. +. .+|+|+|+.+|--.          .+ |.++++|+++-+        ++. 
T Consensus        42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----------~~-V~~iq~d~~~~~~~~~l~~~l~~-  109 (205)
T COG0293          42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----------PG-VIFLQGDITDEDTLEKLLEALGG-  109 (205)
T ss_pred             eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----------CC-ceEEeeeccCccHHHHHHHHcCC-
Confidence            3567899999999999999999987 32 34999999864322          22 899999987642        222 


Q ss_pred             CceeeEEEEeccc--------cccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        145 IQKVDIIISEWMG--------YCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       145 ~~~~D~Ivs~~~~--------~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                       .++|+|+|+...        .+..........+.-....|+|||.++.-
T Consensus       110 -~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K  158 (205)
T COG0293         110 -APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK  158 (205)
T ss_pred             -CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE
Confidence             468999997753        11111122333455556899999998743

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.72  E-value=0.0001  Score=65.49  Aligned_cols=57  Identities=37%  Similarity=0.561  Sum_probs=48.9

Q ss_pred             EEEEECCcccHHHHHHHHcCCC-EEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE
Q psy14674         81 IVLDIGCGTGILSMFAAKSGAA-RVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE  138 (519)
Q Consensus        81 ~VLDiGcGtG~ls~~la~~g~~-~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~  138 (519)
                      ++||+|||.|.++..+++.+.. +|+++|++ .+.+.++++++.|++.+ ++++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence            4899999999999999988643 89999999 69999999999998865 8888876653

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.71  E-value=8.9e-05  Score=73.36  Aligned_cols=83  Identities=24%  Similarity=0.308  Sum_probs=63.8

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCC-Cce
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFG-IQK  147 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~  147 (519)
                      |.....+.++..|||||+|.|.++..+++.+ ++|+++|++ .+++..++...   ...+++++.+|+.++..+.. ...
T Consensus        22 Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~~~~~~   97 (262)
T PF00398_consen   22 IVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYDLLKNQ   97 (262)
T ss_dssp             HHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGGHCSSS
T ss_pred             HHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHHhhcCC
Confidence            3333455689999999999999999999987 699999999 58888887655   23569999999998765520 136


Q ss_pred             eeEEEEecc
Q psy14674        148 VDIIISEWM  156 (519)
Q Consensus       148 ~D~Ivs~~~  156 (519)
                      ...|+++..
T Consensus        98 ~~~vv~NlP  106 (262)
T PF00398_consen   98 PLLVVGNLP  106 (262)
T ss_dssp             EEEEEEEET
T ss_pred             ceEEEEEec
Confidence            678888765

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.70  E-value=0.00012  Score=74.30  Aligned_cols=110  Identities=24%  Similarity=0.192  Sum_probs=67.5

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHH--------cCCCEEEEEech-HHHHHHHHHHHHCCCCCc-EEEEEceeeEeecCCC
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAK--------SGAARVIGIECS-NIVEYAKEIVDKNNLSDV-VTILKGKVEEVELPFG  144 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~--------~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~-i~~~~~d~~~~~~~~~  144 (519)
                      ...++.+|||-.||+|.+...+.+        ....+++|+|++ .++..|+-++.-.+.... ..+..+|....+....
T Consensus        43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~  122 (311)
T PF02384_consen   43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK  122 (311)
T ss_dssp             TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred             hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence            556778999999999998877765        245589999999 588888888766665432 4577777654322211


Q ss_pred             CceeeEEEEecccccc--ccc----------------hhHHHHHHHHhcccCcCeEEE
Q psy14674        145 IQKVDIIISEWMGYCL--FYE----------------SMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l--~~e----------------~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ..+||+|++++.....  ...                ..--.++..+.+.|++||++.
T Consensus       123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~  180 (311)
T PF02384_consen  123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA  180 (311)
T ss_dssp             T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred             ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence            2689999998753222  000                011135566678999999653

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG3045|consensus

Probab=97.69  E-value=8.8e-05  Score=70.80  Aligned_cols=87  Identities=18%  Similarity=0.318  Sum_probs=64.2

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      ......|-|+|||-+.++.   .. ..+|+..|+-.             ..  -.++.+|+.++++++  +++|++|+..
T Consensus       178 r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a-------------~~--~~V~~cDm~~vPl~d--~svDvaV~CL  236 (325)
T KOG3045|consen  178 RPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA-------------VN--ERVIACDMRNVPLED--ESVDVAVFCL  236 (325)
T ss_pred             CcCceEEEecccchhhhhh---cc-ccceeeeeeec-------------CC--CceeeccccCCcCcc--CcccEEEeeH
Confidence            3556799999999998765   22 33799999742             11  367889999988887  9999998754


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      .   +-+ ..+..++.++.|+|++||.+...-
T Consensus       237 S---LMg-tn~~df~kEa~RiLk~gG~l~IAE  264 (325)
T KOG3045|consen  237 S---LMG-TNLADFIKEANRILKPGGLLYIAE  264 (325)
T ss_pred             h---hhc-ccHHHHHHHHHHHhccCceEEEEe
Confidence            3   122 346778899999999999865443

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.68  E-value=0.00041  Score=71.54  Aligned_cols=115  Identities=20%  Similarity=0.212  Sum_probs=85.3

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcC---CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCcee
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSG---AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKV  148 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g---~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~  148 (519)
                      ....+|.+|||+.++.|.=+..+|+..   ...|+|+|.+ .=++..+++++..|+.+ +.++..|...+. .....++|
T Consensus       152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~f  230 (355)
T COG0144         152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKF  230 (355)
T ss_pred             cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCcC
Confidence            567889999999999998777777662   2367999999 58999999999999987 778887776542 11111369


Q ss_pred             eEEEEeccccc--cc-----------------cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        149 DIIISEWMGYC--LF-----------------YESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       149 D~Ivs~~~~~~--l~-----------------~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |.|+.+..-..  ..                 .......+|.+..++|||||.++-++|+
T Consensus       231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS  290 (355)
T COG0144         231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS  290 (355)
T ss_pred             cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence            99998653111  11                 0022346788888999999999999999

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.60  E-value=0.0006  Score=59.75  Aligned_cols=101  Identities=27%  Similarity=0.342  Sum_probs=65.5

Q ss_pred             EEEECCcccHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE--eecCCCCceeeEEEEecc
Q psy14674         82 VLDIGCGTGILSMFAAKSGA--ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE--VELPFGIQKVDIIISEWM  156 (519)
Q Consensus        82 VLDiGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~D~Ivs~~~  156 (519)
                      ++|+|||+|... .+++...  ..++|+|.+ .++..++......+... +.+..++...  +++... ..+|++.+...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~  128 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDS-ASFDLVISLLV  128 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCC-CceeEEeeeee
Confidence            999999999876 4444322  389999999 57777555443322111 6777777765  344421 37999933333


Q ss_pred             ccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .+...    ....+..+.+.|+|+|.++.....
T Consensus       129 ~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         129 LHLLP----PAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             hhcCC----HHHHHHHHHHhcCCCcEEEEEecc
Confidence            22221    566788888999999998866555

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.59  E-value=0.00068  Score=64.07  Aligned_cols=105  Identities=16%  Similarity=0.197  Sum_probs=68.0

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCceee
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKVD  149 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~D  149 (519)
                      ..+.+|.+||-+|+.+|.....++.. | .+.|||||.| ...+..-..+++.   .+|-.+.+|+.... ...--+.+|
T Consensus        69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VD  145 (229)
T PF01269_consen   69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVD  145 (229)
T ss_dssp             -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EE
T ss_pred             cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccccc
Confidence            56788999999999999988888876 4 6689999999 3333333333332   34788888887531 111126899


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +|+++..     ..+..+.++..+..+||+||.++..
T Consensus       146 vI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  146 VIFQDVA-----QPDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             EEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEecCC-----ChHHHHHHHHHHHhhccCCcEEEEE
Confidence            9999865     2234566677777899999988744

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG1269|consensus

Probab=97.57  E-value=0.00014  Score=74.74  Aligned_cols=109  Identities=21%  Similarity=0.221  Sum_probs=86.0

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ....++..++|+|||-|..+...+..+...++|++.+ ..+..+.......++.++-.++.+++...+.++  ..||.+-
T Consensus       106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed--n~fd~v~  183 (364)
T KOG1269|consen  106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED--NTFDGVR  183 (364)
T ss_pred             hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc--cccCcEE
Confidence            4567778999999999999999998877799999999 466677666666677766667778887766665  8999997


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +.-..   .+.+....+++++.|.++|||+++-..
T Consensus       184 ~ld~~---~~~~~~~~~y~Ei~rv~kpGG~~i~~e  215 (364)
T KOG1269|consen  184 FLEVV---CHAPDLEKVYAEIYRVLKPGGLFIVKE  215 (364)
T ss_pred             EEeec---ccCCcHHHHHHHHhcccCCCceEEeHH
Confidence            75553   344567788899999999999998443

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.56  E-value=0.00026  Score=70.44  Aligned_cols=81  Identities=23%  Similarity=0.287  Sum_probs=50.2

Q ss_pred             CCEEEEECCccc-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC-CCCCcEEEEEceeeE-e--ecCCCCceeeEEE
Q psy14674         79 GKIVLDIGCGTG-ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN-NLSDVVTILKGKVEE-V--ELPFGIQKVDIII  152 (519)
Q Consensus        79 ~~~VLDiGcGtG-~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~-~~~~~i~~~~~d~~~-~--~~~~~~~~~D~Iv  152 (519)
                      ..++||||||.. ++.+..++....+++|.|++ ..++.|+++++.| ++.++|+++...-.. +  .+....+.||+.+
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm  182 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM  182 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence            468999999987 55666665533499999999 5999999999999 999999998764332 1  1111226899999


Q ss_pred             Eeccccc
Q psy14674        153 SEWMGYC  159 (519)
Q Consensus       153 s~~~~~~  159 (519)
                      |++..|.
T Consensus       183 CNPPFy~  189 (299)
T PF05971_consen  183 CNPPFYS  189 (299)
T ss_dssp             E-----S
T ss_pred             cCCcccc
Confidence            9997543

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.53  E-value=0.00079  Score=67.00  Aligned_cols=110  Identities=18%  Similarity=0.192  Sum_probs=67.0

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ..+.+.+|||+|||.|.....+...  ...+++++|.| .|++.++..++................+ ..+.  .+.|+|
T Consensus        30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~DLv  106 (274)
T PF09243_consen   30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRD-FLPF--PPDDLV  106 (274)
T ss_pred             cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcc-cccC--CCCcEE
Confidence            4567789999999999755544433  46689999999 6999999887654321111111111111 1121  344999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++..+...+.. .....+++.+.+.+.+ -+++.+.++
T Consensus       107 i~s~~L~EL~~-~~r~~lv~~LW~~~~~-~LVlVEpGt  142 (274)
T PF09243_consen  107 IASYVLNELPS-AARAELVRSLWNKTAP-VLVLVEPGT  142 (274)
T ss_pred             EEehhhhcCCc-hHHHHHHHHHHHhccC-cEEEEcCCC
Confidence            98766555555 4566667766566655 444555555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK10742 putative methyltransferase; Provisional

Probab=97.53  E-value=0.00037  Score=67.24  Aligned_cols=88  Identities=13%  Similarity=0.079  Sum_probs=66.6

Q ss_pred             HHhcCCCCCCC--EEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHC------C--CCCcEEEEEceeeE
Q psy14674         70 MYHNKHLFKGK--IVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKN------N--LSDVVTILKGKVEE  138 (519)
Q Consensus        70 i~~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~------~--~~~~i~~~~~d~~~  138 (519)
                      |.....+.+|.  +|||+-+|+|..+..++..|+ +|+++|.++ +....++.++..      +  +..+++++++|..+
T Consensus        78 l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~  156 (250)
T PRK10742         78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT  156 (250)
T ss_pred             HHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence            33334566776  999999999999999999998 599999995 777777777663      2  23579999999887


Q ss_pred             eecCCCCceeeEEEEeccccc
Q psy14674        139 VELPFGIQKVDIIISEWMGYC  159 (519)
Q Consensus       139 ~~~~~~~~~~D~Ivs~~~~~~  159 (519)
                      +- ......||+|+.++|..+
T Consensus       157 ~L-~~~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        157 AL-TDITPRPQVVYLDPMFPH  176 (250)
T ss_pred             HH-hhCCCCCcEEEECCCCCC
Confidence            62 111157999999998443

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.52  E-value=0.00025  Score=69.21  Aligned_cols=114  Identities=20%  Similarity=0.154  Sum_probs=66.3

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHC----------------CCC----------
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKN----------------NLS----------  126 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~----------------~~~----------  126 (519)
                      ....+|.++||||||.-+.....|..-+.+++..|.++ -.+..++-++..                |-.          
T Consensus        52 ~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l  131 (256)
T PF01234_consen   52 SGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL  131 (256)
T ss_dssp             TSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred             ccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence            34557889999999997765555544577899999873 443333322221                100          


Q ss_pred             -CcE-EEEEceeeEee-cCC---CCceeeEEEEecccccc-ccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        127 -DVV-TILKGKVEEVE-LPF---GIQKVDIIISEWMGYCL-FYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       127 -~~i-~~~~~d~~~~~-~~~---~~~~~D~Ivs~~~~~~l-~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                       ..| .++.+|+.+.+ +..   ...++|+|++....... .........++.+.++|||||.++...
T Consensus       132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~  199 (256)
T PF01234_consen  132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG  199 (256)
T ss_dssp             HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence             023 47778887642 211   01359999986643322 234556777888899999999998543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG1709|consensus

Probab=97.49  E-value=0.00061  Score=63.47  Aligned_cols=103  Identities=24%  Similarity=0.330  Sum_probs=77.9

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC--CCcEEEEEceeeEe--ecCCCCceeeEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL--SDVVTILKGKVEEV--ELPFGIQKVDII  151 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~--~~~i~~~~~d~~~~--~~~~~~~~~D~I  151 (519)
                      .+|.+||.||-|-|+...++.+++..+-+-||.. +.++..++    +|+  .++|.++.+..++.  .+++  +.||-|
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~----~gw~ek~nViil~g~WeDvl~~L~d--~~FDGI  173 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRD----WGWREKENVIILEGRWEDVLNTLPD--KHFDGI  173 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHh----cccccccceEEEecchHhhhccccc--cCccee
Confidence            6889999999999999999998876678889999 57776665    443  35688888888776  4666  779999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      +-+..+.  .+ +.+..+.+.+.|+|||+|.+-....
T Consensus       174 ~yDTy~e--~y-Edl~~~hqh~~rLLkP~gv~SyfNg  207 (271)
T KOG1709|consen  174 YYDTYSE--LY-EDLRHFHQHVVRLLKPEGVFSYFNG  207 (271)
T ss_pred             Eeechhh--HH-HHHHHHHHHHhhhcCCCceEEEecC
Confidence            8776532  22 3455666777899999998754433

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.43  E-value=0.00044  Score=69.12  Aligned_cols=113  Identities=19%  Similarity=0.214  Sum_probs=84.4

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceee
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVD  149 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D  149 (519)
                      ...++..|||+.+|.|.=+..+++.  +.+.|+|.|++ .-+...+++++..|..+ +.++..|.....  .+.  ..||
T Consensus        82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~--~~fd  158 (283)
T PF01189_consen   82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPE--SKFD  158 (283)
T ss_dssp             TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHT--TTEE
T ss_pred             cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccc--cccc
Confidence            4578899999999999877777765  35699999999 68888899999999876 777778877652  221  4699


Q ss_pred             EEEEecccccc----ccc---------------hhHHHHHHHHhccc----CcCeEEEccCCcc
Q psy14674        150 IIISEWMGYCL----FYE---------------SMLDTVLYARDKWL----ATNGLLFPDKASL  190 (519)
Q Consensus       150 ~Ivs~~~~~~l----~~e---------------~~l~~~l~~~~r~L----kpgG~lip~~~~~  190 (519)
                      .|+.+..-...    .+.               .....++....+++    ||||+++-++|++
T Consensus       159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~  222 (283)
T PF01189_consen  159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL  222 (283)
T ss_dssp             EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred             hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence            99986642211    110               12236778888999    9999999999993

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.40  E-value=0.0005  Score=74.95  Aligned_cols=78  Identities=17%  Similarity=0.189  Sum_probs=54.4

Q ss_pred             CCCEEEEECCcccHHHHHHHHcC---------CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec---CCC
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSG---------AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL---PFG  144 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g---------~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~---~~~  144 (519)
                      .+.+|||.|||+|.+...+++..         ...++|+|++ .++..|+.++...+. ..+.+..+|......   ...
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~  109 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY  109 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence            45699999999999888776541         1478999999 589999998877652 125556555432211   111


Q ss_pred             CceeeEEEEecc
Q psy14674        145 IQKVDIIISEWM  156 (519)
Q Consensus       145 ~~~~D~Ivs~~~  156 (519)
                      .++||+||+++.
T Consensus       110 ~~~fD~IIgNPP  121 (524)
T TIGR02987       110 LDLFDIVITNPP  121 (524)
T ss_pred             cCcccEEEeCCC
Confidence            258999999986

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.34  E-value=0.0024  Score=64.64  Aligned_cols=110  Identities=12%  Similarity=0.089  Sum_probs=69.2

Q ss_pred             CCCCCCEEEEECCcccHHHHH----HHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCC-cEEEEEceeeEe-e-cCC--
Q psy14674         75 HLFKGKIVLDIGCGTGILSMF----AAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSD-VVTILKGKVEEV-E-LPF--  143 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~----la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~-~i~~~~~d~~~~-~-~~~--  143 (519)
                      .+.++..++|+|||+|.=+..    +.+. ...+.++||+| ++++.+.+.+....++. .+.-+.+|..+. . ++.  
T Consensus        73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~  152 (319)
T TIGR03439        73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPE  152 (319)
T ss_pred             hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccc
Confidence            345677999999999964332    2222 23479999999 79999988887444443 234478877653 1 211  


Q ss_pred             CCceeeEEEE--eccccccccchhHHHHHHHHhc-ccCcCeEEEcc
Q psy14674        144 GIQKVDIIIS--EWMGYCLFYESMLDTVLYARDK-WLATNGLLFPD  186 (519)
Q Consensus       144 ~~~~~D~Ivs--~~~~~~l~~e~~l~~~l~~~~r-~LkpgG~lip~  186 (519)
                      ......+++.  +.++++-.  .....++..+++ .|+|||.++..
T Consensus       153 ~~~~~r~~~flGSsiGNf~~--~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       153 NRSRPTTILWLGSSIGNFSR--PEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             ccCCccEEEEeCccccCCCH--HHHHHHHHHHHHhhCCCCCEEEEe
Confidence            1133566654  22333222  335567888888 99999988753

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PHA01634 hypothetical protein

Probab=97.33  E-value=0.00079  Score=57.47  Aligned_cols=74  Identities=18%  Similarity=0.203  Sum_probs=56.3

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..++++|+|||++-|..+++++-.||++|+++|++ .+.+..+++++.+.+-++..-..    +++  ..-+.||+.+.+
T Consensus        26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~--~~Y~~~Di~~iD   99 (156)
T PHA01634         26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWN--GEYEDVDIFVMD   99 (156)
T ss_pred             eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----ccc--ccCCCcceEEEE
Confidence            35789999999999999999999999999999999 48899999988876544322221    222  122678888754


Q ss_pred             c
Q psy14674        155 W  155 (519)
Q Consensus       155 ~  155 (519)
                      .
T Consensus       100 C  100 (156)
T PHA01634        100 C  100 (156)
T ss_pred             c
Confidence            3

>KOG3178|consensus

Probab=97.33  E-value=0.0011  Score=66.56  Aligned_cols=94  Identities=20%  Similarity=0.195  Sum_probs=72.9

Q ss_pred             CCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc
Q psy14674         79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG  157 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~  157 (519)
                      -...+|+|.|.|.++..+... ..+|-+++.. +.+..++.... .|    |+.+-+|+..- .|.    -|+|+.-|+.
T Consensus       178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P~----~daI~mkWiL  246 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TPK----GDAIWMKWIL  246 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CCC----cCeEEEEeec
Confidence            378999999999988877774 5579999998 65555554443 33    78888888774 563    5799999998


Q ss_pred             cccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        158 YCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       158 ~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      |++..+ ....+++.+...|+|||.++
T Consensus       247 hdwtDe-dcvkiLknC~~sL~~~GkIi  272 (342)
T KOG3178|consen  247 HDWTDE-DCVKILKNCKKSLPPGGKII  272 (342)
T ss_pred             ccCChH-HHHHHHHHHHHhCCCCCEEE
Confidence            877665 46788999999999999776

>KOG1331|consensus

Probab=97.28  E-value=0.00013  Score=71.07  Aligned_cols=98  Identities=17%  Similarity=0.154  Sum_probs=77.1

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ...+..++|+|||.|-...   ..+...++|+|.+ ..+..|++.    |   ...+..+|+..++.+.  ..||.+++.
T Consensus        43 ~~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~~p~~~--~s~d~~lsi  110 (293)
T KOG1331|consen   43 QPTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALKLPFRE--ESFDAALSI  110 (293)
T ss_pred             cCCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC----C---CceeehhhhhcCCCCC--Cccccchhh
Confidence            3458899999999996532   1244579999999 677777653    1   1257778888776665  899999999


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .+.|++........+++++.|.|+|||.++.
T Consensus       111 avihhlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  111 AVIHHLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            9999998888888899999999999998763

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.19  E-value=0.002  Score=60.70  Aligned_cols=106  Identities=26%  Similarity=0.344  Sum_probs=80.1

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..+.++.||||--|++..++.+.+ +..+++.|++ ..++.|.+++.++++.+++++..+|.... +.. ...+|+|+..
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~-l~~-~d~~d~ivIA   92 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAV-LEL-EDEIDVIVIA   92 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccc-cCc-cCCcCEEEEe
Confidence            356669999999999999999874 7789999999 58999999999999999999999998653 222 1579999887


Q ss_pred             ccccccccchhHHHHHHHHhcccCc--CeEEEccCCc
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLAT--NGLLFPDKAS  189 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~Lkp--gG~lip~~~~  189 (519)
                      .||-.+     ...++++....|+.  .=++-|+..+
T Consensus        93 GMGG~l-----I~~ILee~~~~l~~~~rlILQPn~~~  124 (226)
T COG2384          93 GMGGTL-----IREILEEGKEKLKGVERLILQPNIHT  124 (226)
T ss_pred             CCcHHH-----HHHHHHHhhhhhcCcceEEECCCCCH
Confidence            775432     45566666666653  3333355544

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.17  E-value=0.0026  Score=62.75  Aligned_cols=107  Identities=23%  Similarity=0.244  Sum_probs=64.6

Q ss_pred             CCEEEEECCcccH-HHHHHHHc-C-CCEEEEEech-HHHHHHHHHHH-HCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         79 GKIVLDIGCGTGI-LSMFAAKS-G-AARVIGIECS-NIVEYAKEIVD-KNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        79 ~~~VLDiGcGtG~-ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      +++|+=||||.=- .++.+++. + ...|.++|++ ++++.|++.++ ..++..+++++.+|..+.....  ..||+|+.
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl--~~~DvV~l  198 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL--KEYDVVFL  198 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------SEEEE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc--ccCCEEEE
Confidence            4699999999764 45566654 3 3479999999 69999999988 6788889999999997654333  68999976


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ..+-.  ........++..+.+.++||+.++...+.
T Consensus       199 AalVg--~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~  232 (276)
T PF03059_consen  199 AALVG--MDAEPKEEILEHLAKHMAPGARLVVRSAH  232 (276)
T ss_dssp             -TT-S------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred             hhhcc--cccchHHHHHHHHHhhCCCCcEEEEecch
Confidence            44311  11234678899999999999999877555

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG3201|consensus

Probab=97.11  E-value=0.00024  Score=63.16  Aligned_cols=114  Identities=18%  Similarity=0.276  Sum_probs=74.2

Q ss_pred             HHHHhcCCCCCCCEEEEECCc-ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCC--cEEEEEceeeEeecC
Q psy14674         68 NSMYHNKHLFKGKIVLDIGCG-TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSD--VVTILKGKVEEVELP  142 (519)
Q Consensus        68 ~ai~~~~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~--~i~~~~~d~~~~~~~  142 (519)
                      -.++.......|.+||++|.| +|..++++|.. +...|.-.|-+ +.++-.++....|....  ++.++.-+...-...
T Consensus        19 ~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq   98 (201)
T KOG3201|consen   19 WTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQ   98 (201)
T ss_pred             HHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHH
Confidence            345555566678899999999 56666676654 67789999999 58888887776663321  122222222111111


Q ss_pred             CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      .....||+|+|.-.   +...+..+++.+.+.++|+|.|..+
T Consensus        99 ~eq~tFDiIlaADC---lFfdE~h~sLvdtIk~lL~p~g~Al  137 (201)
T KOG3201|consen   99 QEQHTFDIILAADC---LFFDEHHESLVDTIKSLLRPSGRAL  137 (201)
T ss_pred             HhhCcccEEEeccc---hhHHHHHHHHHHHHHHHhCccccee
Confidence            11158999988433   4445567788899999999999755

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.06  E-value=0.003  Score=63.31  Aligned_cols=114  Identities=15%  Similarity=0.150  Sum_probs=81.1

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHH--H---HCCC-CCcEEEEEceeeEeecCCCCcee
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIV--D---KNNL-SDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~--~---~~~~-~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      ....+||-+|.|.|.-...+.+.+ ..+++-||++ +|++.++++.  +   ++.+ ..|++++..|+.++- ....+.|
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wl-r~a~~~f  366 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWL-RTAADMF  366 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHH-Hhhcccc
Confidence            445699999999999999999986 8899999999 5999998432  2   2223 357999999988762 2222689


Q ss_pred             eEEEEeccccccccch--hHHHHHHHHhcccCcCeEEEccCCccc
Q psy14674        149 DIIISEWMGYCLFYES--MLDTVLYARDKWLATNGLLFPDKASLF  191 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~--~l~~~l~~~~r~LkpgG~lip~~~~~~  191 (519)
                      |+||.+...-.-....  .-..+..-+.+.|+++|+++....+-|
T Consensus       367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y  411 (508)
T COG4262         367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY  411 (508)
T ss_pred             cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc
Confidence            9999876432111111  112334455789999999998887744

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.05  E-value=0.0046  Score=57.32  Aligned_cols=105  Identities=16%  Similarity=0.236  Sum_probs=72.0

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCceeeE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKVDI  150 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~D~  150 (519)
                      ..+.+|.+||=+|+-+|......+.- |...+||||.| .+.+..-..+++.   ++|-.+.+|+.... ...--+.+|+
T Consensus        72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDv  148 (231)
T COG1889          72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDV  148 (231)
T ss_pred             CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccE
Confidence            46788999999999999888888775 66789999999 4333333333221   34677888886431 0001167999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      |+.+..     .....+-+...+..+||+||.++..
T Consensus       149 iy~DVA-----Qp~Qa~I~~~Na~~FLk~~G~~~i~  179 (231)
T COG1889         149 IYQDVA-----QPNQAEILADNAEFFLKKGGYVVIA  179 (231)
T ss_pred             EEEecC-----CchHHHHHHHHHHHhcccCCeEEEE
Confidence            998765     2234556677888999999976633

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.03  E-value=0.0027  Score=55.98  Aligned_cols=84  Identities=20%  Similarity=0.220  Sum_probs=55.9

Q ss_pred             EEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccch----hHH---HHHHHHh
Q psy14674        103 RVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYES----MLD---TVLYARD  174 (519)
Q Consensus       103 ~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~----~l~---~~l~~~~  174 (519)
                      +|+|.|+. ++++.+++++++.++.+++++++.+-+++......+++|+++.+. ||......    ..+   ..++++.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al   79 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL   79 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence            69999999 699999999999999999999998887764221114899999864 44443321    111   2355566


Q ss_pred             cccCcCeEEEccC
Q psy14674        175 KWLATNGLLFPDK  187 (519)
Q Consensus       175 r~LkpgG~lip~~  187 (519)
                      ++|+|||+++.-.
T Consensus        80 ~lL~~gG~i~iv~   92 (140)
T PF06962_consen   80 ELLKPGGIITIVV   92 (140)
T ss_dssp             HHEEEEEEEEEEE
T ss_pred             HhhccCCEEEEEE
Confidence            8999999987443

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG4589|consensus

Probab=96.87  E-value=0.0018  Score=59.06  Aligned_cols=100  Identities=24%  Similarity=0.279  Sum_probs=62.9

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEc-eeeEe--------ecCC
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKG-KVEEV--------ELPF  143 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~-d~~~~--------~~~~  143 (519)
                      -+.++.+|||+||..|.++..+.+.  +.+.|.|||+-...          ... .++++++ |+.+.        .+|.
T Consensus        66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------p~~-Ga~~i~~~dvtdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------PPE-GATIIQGNDVTDPETYRKIFEALPN  134 (232)
T ss_pred             ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------CCC-CcccccccccCCHHHHHHHHHhCCC
Confidence            4578999999999999999998887  56789999986311          111 1455555 55442        2454


Q ss_pred             CCceeeEEEEecccc-----ccccchhHH---HHHHHHhcccCcCeEEEccC
Q psy14674        144 GIQKVDIIISEWMGY-----CLFYESMLD---TVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~-----~l~~e~~l~---~~l~~~~r~LkpgG~lip~~  187 (519)
                        .++|+|+|+....     ...+....+   +++.-....++|+|.++.-.
T Consensus       135 --r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~  184 (232)
T KOG4589|consen  135 --RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL  184 (232)
T ss_pred             --CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence              7899999976411     112222111   12222236778999888543

>KOG4058|consensus

Probab=96.79  E-value=0.004  Score=54.66  Aligned_cols=103  Identities=17%  Similarity=0.186  Sum_probs=74.1

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ..-.+..+.+|+|+|.|.+-+.+++.|....+|+|+++ ++.+++-..-..|...+..|...|+-...+.+  -.+=+|+
T Consensus        68 l~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d--y~~vviF  145 (199)
T KOG4058|consen   68 LRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD--YRNVVIF  145 (199)
T ss_pred             ccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc--cceEEEe
Confidence            33455568999999999999999999988999999997 88888888878888888899998888776653  2333332


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                              ..|+++..+-..+..-|..|..++-.
T Consensus       146 --------gaes~m~dLe~KL~~E~p~nt~vvac  171 (199)
T KOG4058|consen  146 --------GAESVMPDLEDKLRTELPANTRVVAC  171 (199)
T ss_pred             --------ehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence                    22344444445554456666666633

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.74  E-value=0.0038  Score=58.82  Aligned_cols=86  Identities=22%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             CEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC-CCceeeEEEEecccc
Q psy14674         80 KIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF-GIQKVDIIISEWMGY  158 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~D~Ivs~~~~~  158 (519)
                      .++|||||=+......  ..+.-.|++||+++               ..-.+.+.|+.+.++|. ..++||+|+++.+..
T Consensus        53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns---------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN  115 (219)
T PF11968_consen   53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNS---------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLN  115 (219)
T ss_pred             ceEEeecccCCCCccc--ccCceeeEEeecCC---------------CCCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence            6999999986544322  33444799999973               01356788888887763 237999999999887


Q ss_pred             ccccchhHHHHHHHHhcccCcCeE
Q psy14674        159 CLFYESMLDTVLYARDKWLATNGL  182 (519)
Q Consensus       159 ~l~~e~~l~~~l~~~~r~LkpgG~  182 (519)
                      +.......-.++..+.++|+|+|.
T Consensus       116 fVP~p~~RG~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen  116 FVPDPKQRGEMLRRAHKFLKPPGL  139 (219)
T ss_pred             eCCCHHHHHHHHHHHHHHhCCCCc
Confidence            777666677788889999999998

>KOG2352|consensus

Probab=96.69  E-value=0.011  Score=61.95  Aligned_cols=101  Identities=21%  Similarity=0.270  Sum_probs=75.8

Q ss_pred             CEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecccc
Q psy14674         80 KIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGY  158 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~  158 (519)
                      -++|-+|||.-.++..+-+.|...|+.+|.|+ .++.+.......  ..-+.+...|+..+.+++  ++||+|+...-..
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fed--ESFdiVIdkGtlD  125 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFED--ESFDIVIDKGTLD  125 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCC--cceeEEEecCccc
Confidence            38999999999999999999999999999995 555544433211  123789999999888887  9999999865433


Q ss_pred             cc-ccch------hHHHHHHHHhcccCcCeEEE
Q psy14674        159 CL-FYES------MLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       159 ~l-~~e~------~l~~~l~~~~r~LkpgG~li  184 (519)
                      .+ ..+.      .....+..+.|+|++||+++
T Consensus       126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~  158 (482)
T KOG2352|consen  126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI  158 (482)
T ss_pred             cccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence            33 2222      23456788899999999866

>KOG0822|consensus

Probab=96.62  E-value=0.0022  Score=67.23  Aligned_cols=78  Identities=21%  Similarity=0.329  Sum_probs=61.1

Q ss_pred             eEEEEeecceeeEEEEEEEEEEcCCCceeEEecCCCCC---CCCceeEEEeecccccccCCCEEEEEEEEEeCCCCCcee
Q psy14674        419 FTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAH---YTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDL  495 (519)
Q Consensus       419 f~~~~~~~~~~~g~~~wFd~~F~~~~~~v~lsT~P~~~---~THWkQt~~~l~~~~~v~~g~~i~g~~~~~~~~~~~r~l  495 (519)
                      .+|++++++.+|||++|||...-+   .|.||+-|...   -+-|-..+|.+++|+.|.+|+.|+-.+-=+-     -..
T Consensus       544 ~eF~~~~~~~lHGFaGYFd~~LYk---dI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~wR~~-----d~~  615 (649)
T KOG0822|consen  544 VEFKVKSNGVLHGFAGYFDAVLYK---DIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHFWRCV-----DST  615 (649)
T ss_pred             EEEecCCCceEeecchhhhhhhhh---eeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEEEEEe-----CCc
Confidence            467778899999999999998765   39999988433   5679999999999999999999987665332     223


Q ss_pred             EEEEEEEEc
Q psy14674        496 DFTVEVNFK  504 (519)
Q Consensus       496 ~i~~~~~~~  504 (519)
                      .|=.+|.++
T Consensus       616 kVWYEW~v~  624 (649)
T KOG0822|consen  616 KVWYEWSVE  624 (649)
T ss_pred             eeEEEEEee
Confidence            455666665

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.62  E-value=0.0079  Score=56.63  Aligned_cols=123  Identities=18%  Similarity=0.269  Sum_probs=63.1

Q ss_pred             hhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH----c-CCCEEEEEech-H-HHHHHHHHHHHCCCCCc
Q psy14674         56 MLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK----S-GAARVIGIECS-N-IVEYAKEIVDKNNLSDV  128 (519)
Q Consensus        56 ~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~----~-g~~~V~gvD~s-~-~~~~A~~~~~~~~~~~~  128 (519)
                      +++......+|.+.|.+.    +++.|+++|.-.|.-+.+.|.    . +.++|+|||+. . ....|   .+...+.++
T Consensus        14 i~q~P~Dm~~~qeli~~~----kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a---~e~hp~~~r   86 (206)
T PF04989_consen   14 IIQYPQDMVAYQELIWEL----KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA---IESHPMSPR   86 (206)
T ss_dssp             ESS-HHHHHHHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G---GGG----TT
T ss_pred             hhcCHHHHHHHHHHHHHh----CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH---HhhccccCc
Confidence            344445566777777653    567999999999876665554    2 46799999996 3 22222   233556678


Q ss_pred             EEEEEceeeEeec----CC--CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        129 VTILKGKVEEVEL----PF--GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       129 i~~~~~d~~~~~~----~~--~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |++++||..+...    ..  ......+|+-+.-   -.++..+. .++....++++|+++|.....
T Consensus        87 I~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~---H~~~hvl~-eL~~y~plv~~G~Y~IVeDt~  149 (206)
T PF04989_consen   87 ITFIQGDSIDPEIVDQVRELASPPHPVLVILDSS---HTHEHVLA-ELEAYAPLVSPGSYLIVEDTI  149 (206)
T ss_dssp             EEEEES-SSSTHHHHTSGSS----SSEEEEESS-------SSHHH-HHHHHHHT--TT-EEEETSHH
T ss_pred             eEEEECCCCCHHHHHHHHHhhccCCceEEEECCC---ccHHHHHH-HHHHhCccCCCCCEEEEEecc
Confidence            9999999876421    10  0123456655432   12233343 356678999999999866554

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG1227|consensus

Probab=96.54  E-value=0.00093  Score=65.28  Aligned_cols=95  Identities=23%  Similarity=0.312  Sum_probs=75.1

Q ss_pred             CCCEEEEECCcccHHHH-HHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         78 KGKIVLDIGCGTGILSM-FAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~-~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .+..|.|+=+|-|++++ ++..+||+.|+|+|.++ .++..+++++.|+..++..++.+|.....+.   ...|-|....
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~---~~AdrVnLGL  270 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR---LRADRVNLGL  270 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc---ccchheeecc
Confidence            45799999999999999 89999999999999995 9999999999999988888888888765433   6788886544


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeE
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGL  182 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~  182 (519)
                      +   ...++.+....    ++|||.|-
T Consensus       271 l---PSse~~W~~A~----k~Lk~egg  290 (351)
T KOG1227|consen  271 L---PSSEQGWPTAI----KALKPEGG  290 (351)
T ss_pred             c---cccccchHHHH----HHhhhcCC
Confidence            3   44455554433    56777543

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.54  E-value=0.0069  Score=62.88  Aligned_cols=104  Identities=21%  Similarity=0.205  Sum_probs=74.3

Q ss_pred             CCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCC-cEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSD-VVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      .+-+|||.=+|+|.=++..++.  +..+|++-|+| ++++.+++|++.|++.+ ++++.+.|+..+-. ...+.||+|=.
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-~~~~~fD~IDl  127 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY-SRQERFDVIDL  127 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-HSTT-EEEEEE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-hccccCCEEEe
Confidence            4568999999999988866655  67899999999 69999999999999998 79999999887531 11279999977


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +++|.       ...++++..+.++.||++......
T Consensus       128 DPfGS-------p~pfldsA~~~v~~gGll~vTaTD  156 (377)
T PF02005_consen  128 DPFGS-------PAPFLDSALQAVKDGGLLCVTATD  156 (377)
T ss_dssp             --SS---------HHHHHHHHHHEEEEEEEEEEE--
T ss_pred             CCCCC-------ccHhHHHHHHHhhcCCEEEEeccc
Confidence            77643       344566666889999998866544

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG3987|consensus

Probab=96.52  E-value=0.00084  Score=62.10  Aligned_cols=95  Identities=23%  Similarity=0.244  Sum_probs=63.0

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe-c
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE-W  155 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~-~  155 (519)
                      .+.++||+|+|.|-++..++.. ..+|+|.|+| .|....+++    +.    .++.  ..+..-.  +-++|+|.|- .
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y----nVl~--~~ew~~t--~~k~dli~clNl  178 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY----NVLT--EIEWLQT--DVKLDLILCLNL  178 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC----ceee--ehhhhhc--CceeehHHHHHH
Confidence            3579999999999999988776 5589999999 587765543    22    1211  1111111  1579999873 3


Q ss_pred             cccccccchhHHHHHHHHhcccCc-CeEEEccCCc
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLAT-NGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~Lkp-gG~lip~~~~  189 (519)
                      +..+.    ..-.+++.++.+|+| +|.+|....-
T Consensus       179 LDRc~----~p~kLL~Di~~vl~psngrvivaLVL  209 (288)
T KOG3987|consen  179 LDRCF----DPFKLLEDIHLVLAPSNGRVIVALVL  209 (288)
T ss_pred             HHhhc----ChHHHHHHHHHHhccCCCcEEEEEEe
Confidence            33322    344667888889998 8888766544

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.50  E-value=0.013  Score=58.80  Aligned_cols=82  Identities=22%  Similarity=0.285  Sum_probs=63.7

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCC-CCc
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPF-GIQ  146 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~-~~~  146 (519)
                      ......+|..++|.=+|.|.-+..+++. +..+|+|+|.+ .+++.|+++++..  .+++++++++..++.  +.. +..
T Consensus        14 ~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~~~   91 (305)
T TIGR00006        14 EGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELLVT   91 (305)
T ss_pred             HhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcCCC
Confidence            3345667889999999999999988876 44799999999 6999999988653  468999999988762  111 125


Q ss_pred             eeeEEEEec
Q psy14674        147 KVDIIISEW  155 (519)
Q Consensus       147 ~~D~Ivs~~  155 (519)
                      ++|.|+.+.
T Consensus        92 ~vDgIl~DL  100 (305)
T TIGR00006        92 KIDGILVDL  100 (305)
T ss_pred             cccEEEEec
Confidence            799998865

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.47  E-value=0.0062  Score=58.53  Aligned_cols=88  Identities=20%  Similarity=0.175  Sum_probs=50.7

Q ss_pred             HHhcCCCCCCC--EEEEECCcccHHHHHHHHcCCCEEEEEechH-H---HHHHHHHHHHCCCC-----CcEEEEEceeeE
Q psy14674         70 MYHNKHLFKGK--IVLDIGCGTGILSMFAAKSGAARVIGIECSN-I---VEYAKEIVDKNNLS-----DVVTILKGKVEE  138 (519)
Q Consensus        70 i~~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~---~~~A~~~~~~~~~~-----~~i~~~~~d~~~  138 (519)
                      +.....+.++.  +|||.-+|-|.-++.+|..|. +|+++|.|+ +   ++.+-++.....-.     .+|+++++|..+
T Consensus        65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~  143 (234)
T PF04445_consen   65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE  143 (234)
T ss_dssp             HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred             HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence            33334555554  999999999999998888887 899999995 3   33343444433222     479999999988


Q ss_pred             eecCCCCceeeEEEEeccccc
Q psy14674        139 VELPFGIQKVDIIISEWMGYC  159 (519)
Q Consensus       139 ~~~~~~~~~~D~Ivs~~~~~~  159 (519)
                      +- .....+||+|+.++|...
T Consensus       144 ~L-~~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  144 YL-RQPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             HC-CCHSS--SEEEE--S---
T ss_pred             HH-hhcCCCCCEEEECCCCCC
Confidence            52 122379999999998443

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG2798|consensus

Probab=96.43  E-value=0.03  Score=55.36  Aligned_cols=119  Identities=20%  Similarity=0.205  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhcCCCCC-------CCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCc-----
Q psy14674         62 RTMTYRNSMYHNKHLFK-------GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDV-----  128 (519)
Q Consensus        62 r~~~y~~ai~~~~~~~~-------~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~-----  128 (519)
                      |...|...|.+...+.+       ..+||--|||.|.|+.-+|..|. ++-|=|.| -|+-...=.+..-..++.     
T Consensus       127 Rd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYP  205 (369)
T KOG2798|consen  127 RDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYP  205 (369)
T ss_pred             hhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEe
Confidence            44455544443333333       35899999999999999999987 67777888 454332222211111111     


Q ss_pred             ----------------------------------EEEEEceeeEee-cCCCCceeeEEEEeccccccccchhHHHHHHHH
Q psy14674        129 ----------------------------------VTILKGKVEEVE-LPFGIQKVDIIISEWMGYCLFYESMLDTVLYAR  173 (519)
Q Consensus       129 ----------------------------------i~~~~~d~~~~~-~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~  173 (519)
                                                        .....||+.+.- .+...+.||+|+..++   +.-....-..++.+
T Consensus       206 fIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfF---IDTa~NileYi~tI  282 (369)
T KOG2798|consen  206 FIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFF---IDTAHNILEYIDTI  282 (369)
T ss_pred             eeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEE---eechHHHHHHHHHH
Confidence                                              112234444431 1212247999988765   44334455668889


Q ss_pred             hcccCcCeEEE
Q psy14674        174 DKWLATNGLLF  184 (519)
Q Consensus       174 ~r~LkpgG~li  184 (519)
                      .+.|||||+.+
T Consensus       283 ~~iLk~GGvWi  293 (369)
T KOG2798|consen  283 YKILKPGGVWI  293 (369)
T ss_pred             HHhccCCcEEE
Confidence            99999999877

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.35  E-value=0.0057  Score=56.31  Aligned_cols=116  Identities=16%  Similarity=0.182  Sum_probs=74.4

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEechHHHHHH-------HHHHHHCCCCCcEEEEEceeeEee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECSNIVEYA-------KEIVDKNNLSDVVTILKGKVEEVE  140 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~~~~~A-------~~~~~~~~~~~~i~~~~~d~~~~~  140 (519)
                      ++....+.+|.+|+|+=-|.|.++..++.. | ...||+.-..+....+       +...++.... +++.+-.....+.
T Consensus        40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~  118 (238)
T COG4798          40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALG  118 (238)
T ss_pred             eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccC
Confidence            334467899999999999999999998886 3 4478887665321111       1111222222 2566666665555


Q ss_pred             cCCCCceeeEEEEeccccccc----cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        141 LPFGIQKVDIIISEWMGYCLF----YESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~----~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .+   ++.|++......|.++    +......+..++.+.|||||.++.....
T Consensus       119 ~p---q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~  168 (238)
T COG4798         119 AP---QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR  168 (238)
T ss_pred             CC---CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence            44   6788887654433332    2345677788899999999988754433

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.31  E-value=0.059  Score=51.80  Aligned_cols=108  Identities=15%  Similarity=0.214  Sum_probs=62.6

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC-CC
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF-GI  145 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~  145 (519)
                      +++.......|++||-+|-+- ..|+.+|.. ..++|+.+|++ .+++..++.+++.|++  |+.++.|+.+ ++|. -.
T Consensus        35 ~~~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~-~LP~~~~  110 (243)
T PF01861_consen   35 ALMAERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRD-PLPEELR  110 (243)
T ss_dssp             HHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----TTTS
T ss_pred             HHHHhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccc-cCCHHHh
Confidence            333445667899999999776 444444432 45699999999 5999999999999987  9999999987 4443 24


Q ss_pred             ceeeEEEEeccccccccchhHHHHHHHHhcccCcCe-EEE
Q psy14674        146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNG-LLF  184 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG-~li  184 (519)
                      ++||++++++...    ..-+..++......||..| ..+
T Consensus       111 ~~fD~f~TDPPyT----~~G~~LFlsRgi~~Lk~~g~~gy  146 (243)
T PF01861_consen  111 GKFDVFFTDPPYT----PEGLKLFLSRGIEALKGEGCAGY  146 (243)
T ss_dssp             S-BSEEEE---SS----HHHHHHHHHHHHHTB-STT-EEE
T ss_pred             cCCCEEEeCCCCC----HHHHHHHHHHHHHHhCCCCceEE
Confidence            7999999998632    2345666666667787655 444

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG1122|consensus

Probab=96.29  E-value=0.025  Score=58.08  Aligned_cols=117  Identities=12%  Similarity=0.100  Sum_probs=81.8

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ....+|.+|||+.+-.|.=+.++|..  +-+.|+|.|.+ +-+...+.++...|+.+ ..+...|..+++-..-.++||-
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~~~fDR  315 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFPGSFDR  315 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccCcccce
Confidence            45678999999999999755555543  45689999999 68889999999999876 4556666665421111157999


Q ss_pred             EEEeccccc--cc-----------------cchhHHHHHHHHhcccCcCeEEEccCCccc
Q psy14674        151 IISEWMGYC--LF-----------------YESMLDTVLYARDKWLATNGLLFPDKASLF  191 (519)
Q Consensus       151 Ivs~~~~~~--l~-----------------~e~~l~~~l~~~~r~LkpgG~lip~~~~~~  191 (519)
                      |+.+..-..  +.                 +......++.....++++||+++-++|++.
T Consensus       316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~  375 (460)
T KOG1122|consen  316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT  375 (460)
T ss_pred             eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence            987553222  11                 112334566666689999999999999843

>KOG2920|consensus

Probab=96.09  E-value=0.006  Score=59.70  Aligned_cols=112  Identities=23%  Similarity=0.380  Sum_probs=64.6

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHH-------HHHHHH--HCCCCCcEEEEEceeeEeecCC
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEY-------AKEIVD--KNNLSDVVTILKGKVEEVELPF  143 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~-------A~~~~~--~~~~~~~i~~~~~d~~~~~~~~  143 (519)
                      .-...+++|||+|||+|..++.+...|+..+...|.+ +.++.       ++-.+.  .+....-..+......+..+-.
T Consensus       112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~  191 (282)
T KOG2920|consen  112 QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH  191 (282)
T ss_pred             heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhh
Confidence            4457899999999999999999999887889999988 54421       000000  1111111222222111211110


Q ss_pred             CCc--eeeEEEEeccccccccchhHHHH-HHHHhcccCcCeEEEccCCc
Q psy14674        144 GIQ--KVDIIISEWMGYCLFYESMLDTV-LYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       144 ~~~--~~D~Ivs~~~~~~l~~e~~l~~~-l~~~~r~LkpgG~lip~~~~  189 (519)
                       .+  +||+|.+.-..+..   ..++.+ ...+..+++++|+++...-.
T Consensus       192 -t~~~~ydlIlsSetiy~~---~~~~~~~~~~r~~l~~~D~~~~~aAK~  236 (282)
T KOG2920|consen  192 -TERTHYDLILSSETIYSI---DSLAVLYLLHRPCLLKTDGVFYVAAKK  236 (282)
T ss_pred             -ccccchhhhhhhhhhhCc---chhhhhHhhhhhhcCCccchhhhhhHh
Confidence             03  78988775553333   334444 55566788999987644433

>KOG3115|consensus

Probab=96.08  E-value=0.014  Score=54.15  Aligned_cols=61  Identities=26%  Similarity=0.399  Sum_probs=45.8

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCC------CCcEEEEEceeeE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNL------SDVVTILKGKVEE  138 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~------~~~i~~~~~d~~~  138 (519)
                      +.-.+.|||||-|.+.+.++.. +..-+.|+|+- ...++.++++++...      -.++.+...++..
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk  128 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK  128 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh
Confidence            4457999999999999998877 66689999998 688888888766541      1236666665544

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.00  E-value=0.043  Score=53.77  Aligned_cols=108  Identities=16%  Similarity=0.115  Sum_probs=66.9

Q ss_pred             CEEEEECCccc--HHHHHHHHc--CCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEee----------cCCC
Q psy14674         80 KIVLDIGCGTG--ILSMFAAKS--GAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVE----------LPFG  144 (519)
Q Consensus        80 ~~VLDiGcGtG--~ls~~la~~--g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~  144 (519)
                      ...||||||--  ......|+.  +..+|+-||..+ .+..++..+..+.- .+..++++|+.+..          +-+.
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~  148 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF  148 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence            58999999943  234445543  667999999997 78889988877642 35889999987741          1111


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.++=+++. .+.|++..+.....++..+...|.||.+++.+..+
T Consensus       149 ~rPVavll~-~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t  192 (267)
T PF04672_consen  149 DRPVAVLLV-AVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT  192 (267)
T ss_dssp             TS--EEEEC-T-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred             CCCeeeeee-eeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence            244555544 45667777677889999999999999999988877

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG2793|consensus

Probab=95.52  E-value=0.056  Score=52.46  Aligned_cols=102  Identities=24%  Similarity=0.244  Sum_probs=60.8

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHH-----HHCCCCCcEEEEEceeeEeec-CCCCce-eeE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIV-----DKNNLSDVVTILKGKVEEVEL-PFGIQK-VDI  150 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~-----~~~~~~~~i~~~~~d~~~~~~-~~~~~~-~D~  150 (519)
                      +..+||++|+|+|..++.+|......|.-.|....++....+.     +.+++...+.+..-+..+... ...... +|+
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl  165 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL  165 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence            4568999999999999988886555999999885433333332     333333334444333322110 000133 899


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeE
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGL  182 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~  182 (519)
                      |++.-+.   ..++..+.++..+..+|..+|.
T Consensus       166 ilasDvv---y~~~~~e~Lv~tla~ll~~~~~  194 (248)
T KOG2793|consen  166 ILASDVV---YEEESFEGLVKTLAFLLAKDGT  194 (248)
T ss_pred             EEEeeee---ecCCcchhHHHHHHHHHhcCCe
Confidence            9986553   3334455556666677777773

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.52  E-value=0.032  Score=55.89  Aligned_cols=113  Identities=17%  Similarity=0.131  Sum_probs=64.5

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeE--eecCCCCceeeE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEE--VELPFGIQKVDI  150 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~D~  150 (519)
                      ..+..+++||+|.|.|.-...+-..  --..++-+|.|+++...-.-+..|-...+...-..|+..  +++|.. ..|++
T Consensus       110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a-d~ytl  188 (484)
T COG5459         110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA-DLYTL  188 (484)
T ss_pred             CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc-ceeeh
Confidence            4567788999999998765544433  245788899997665555555554433322333333332  233321 45777


Q ss_pred             EEEe-ccccccccchhHHHHHHHHhcccCcCeEEE-ccCCc
Q psy14674        151 IISE-WMGYCLFYESMLDTVLYARDKWLATNGLLF-PDKAS  189 (519)
Q Consensus       151 Ivs~-~~~~~l~~e~~l~~~l~~~~r~LkpgG~li-p~~~~  189 (519)
                      ++.. -+.+ ...+..+...++.+..++.|||.++ .+.++
T Consensus       189 ~i~~~eLl~-d~~ek~i~~~ie~lw~l~~~gg~lVivErGt  228 (484)
T COG5459         189 AIVLDELLP-DGNEKPIQVNIERLWNLLAPGGHLVIVERGT  228 (484)
T ss_pred             hhhhhhhcc-ccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence            6541 1111 1223334446777778999999877 44444

>KOG1596|consensus

Probab=95.46  E-value=0.041  Score=52.39  Aligned_cols=104  Identities=17%  Similarity=0.211  Sum_probs=66.0

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEechH-----HHHHHHHHHHHCCCCCcEEEEEceeeEee-cCC
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECSN-----IVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPF  143 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-----~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~  143 (519)
                      .+..+.+|.+||=+|+++|..-...+..  +..-|||||.|+     ++..|+++      . +|-.+..|+.... ..-
T Consensus       150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------t-NiiPIiEDArhP~KYRm  222 (317)
T KOG1596|consen  150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------T-NIIPIIEDARHPAKYRM  222 (317)
T ss_pred             cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------C-CceeeeccCCCchheee
Confidence            3567899999999999999877777665  345799999983     34444433      2 2555656665421 000


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      .-.-+|+|+++..    .. .....+.-....+||+||.++.+.
T Consensus       223 lVgmVDvIFaDva----qp-dq~RivaLNA~~FLk~gGhfvisi  261 (317)
T KOG1596|consen  223 LVGMVDVIFADVA----QP-DQARIVALNAQYFLKNGGHFVISI  261 (317)
T ss_pred             eeeeEEEEeccCC----Cc-hhhhhhhhhhhhhhccCCeEEEEE
Confidence            1146899988764    11 222333334457999999988554

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=95.40  E-value=0.064  Score=51.86  Aligned_cols=74  Identities=19%  Similarity=0.253  Sum_probs=50.9

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      .+.+..+|+|||||.=-+++..... +...++|+|++ .+++...+.....+..  .++...|...-. +.  +..|+.+
T Consensus       102 ~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~-~~--~~~DlaL  176 (251)
T PF07091_consen  102 RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP-PK--EPADLAL  176 (251)
T ss_dssp             CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH-TT--SEESEEE
T ss_pred             cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC-CC--CCcchhh
Confidence            3455789999999998888865544 33499999999 6999999999988876  455555655432 33  7899996


Q ss_pred             E
Q psy14674        153 S  153 (519)
Q Consensus       153 s  153 (519)
                      .
T Consensus       177 l  177 (251)
T PF07091_consen  177 L  177 (251)
T ss_dssp             E
T ss_pred             H
Confidence            5

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.34  E-value=0.044  Score=55.65  Aligned_cols=89  Identities=28%  Similarity=0.344  Sum_probs=59.1

Q ss_pred             CCCCCCCEEEEECCccc--HHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEce-eeEe-ecCCCCce
Q psy14674         74 KHLFKGKIVLDIGCGTG--ILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK-VEEV-ELPFGIQK  147 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG--~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d-~~~~-~~~~~~~~  147 (519)
                      ....+|++|+-+|+| |  .++..+|+ .| .+|+++|.| +-++.|++.-+.       .++... .... ...   +.
T Consensus       162 ~~~~pG~~V~I~G~G-GlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~~~~---~~  229 (339)
T COG1064         162 ANVKPGKWVAVVGAG-GLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD-------HVINSSDSDALEAVK---EI  229 (339)
T ss_pred             cCCCCCCEEEEECCc-HHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhHHhH---hh
Confidence            467889999999998 6  56777777 47 499999999 578888875332       344433 1111 122   34


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +|+|+....      ...    +....+.|++||.++
T Consensus       230 ~d~ii~tv~------~~~----~~~~l~~l~~~G~~v  256 (339)
T COG1064         230 ADAIIDTVG------PAT----LEPSLKALRRGGTLV  256 (339)
T ss_pred             CcEEEECCC------hhh----HHHHHHHHhcCCEEE
Confidence            999986432      112    333347899999988

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.23  E-value=0.03  Score=58.99  Aligned_cols=99  Identities=14%  Similarity=0.219  Sum_probs=65.3

Q ss_pred             CEEEEECCcccHHHHHHHHcCCCEEEEEech---HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCceeeEEEEec
Q psy14674         80 KIVLDIGCGTGILSMFAAKSGAARVIGIECS---NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKVDIIISEW  155 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s---~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~D~Ivs~~  155 (519)
                      ..|+|..+|.|.++..+...+. -|.-|=+.   +.+..    +-+.|+   |-+.+.=.+.+. .|   ..||+|.++.
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~V-WVMNVVP~~~~ntL~v----IydRGL---IG~yhDWCE~fsTYP---RTYDLlHA~~  435 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPV-WVMNVVPVSGPNTLPV----IYDRGL---IGVYHDWCEAFSTYP---RTYDLLHADG  435 (506)
T ss_pred             eeeeeecccccHHHHHhccCCc-eEEEecccCCCCcchh----hhhccc---chhccchhhccCCCC---cchhheehhh
Confidence            4899999999999998887753 23222222   22222    223344   333332233332 33   8999999987


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.......-.+..++-++.|+|+|||.++.....
T Consensus       436 lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~  469 (506)
T PF03141_consen  436 LFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV  469 (506)
T ss_pred             hhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence            7655555556788899999999999999976544

; GO: 0008168 methyltransferase activity

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=94.85  E-value=0.04  Score=54.86  Aligned_cols=69  Identities=17%  Similarity=0.241  Sum_probs=51.9

Q ss_pred             EEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         81 IVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        81 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      +|+|+.||.|.++..+.++|...|.++|++ .+++..+++...       .++.+|+.++........+|+++..+.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpP   71 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFP   71 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCC
Confidence            689999999999999999999889999999 577766665422       266778887643210257999998653

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG0024|consensus

Probab=94.79  E-value=0.073  Score=53.10  Aligned_cols=98  Identities=26%  Similarity=0.292  Sum_probs=62.7

Q ss_pred             CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee--eEe----ecCCC
Q psy14674         74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV--EEV----ELPFG  144 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~--~~~----~~~~~  144 (519)
                      .....|.+||-+|+|. |.+++..|++ |+++|+.+|++ +-++.|++ +   |... +.......  .++    .-..+
T Consensus       165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~-~~~~~~~~~~~~~~~~v~~~~g  239 (354)
T KOG0024|consen  165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATV-TDPSSHKSSPQELAELVEKALG  239 (354)
T ss_pred             cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeE-EeeccccccHHHHHHHHHhhcc
Confidence            5678899999999995 7888888887 99999999999 68999988 2   3221 11111111  111    11111


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ...+|+.+...-         .+..+++.-..|++||.++.
T Consensus       240 ~~~~d~~~dCsG---------~~~~~~aai~a~r~gGt~vl  271 (354)
T KOG0024|consen  240 KKQPDVTFDCSG---------AEVTIRAAIKATRSGGTVVL  271 (354)
T ss_pred             ccCCCeEEEccC---------chHHHHHHHHHhccCCEEEE
Confidence            145888875332         22334444578899998663

>KOG2671|consensus

Probab=94.53  E-value=0.024  Score=56.70  Aligned_cols=81  Identities=28%  Similarity=0.269  Sum_probs=64.5

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHH-------HHHHHHHHCCCCC-cEEEEEceeeEeecCCC
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVE-------YAKEIVDKNNLSD-VVTILKGKVEEVELPFG  144 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~-------~A~~~~~~~~~~~-~i~~~~~d~~~~~~~~~  144 (519)
                      +...+|+.|.|--.|||.+...+|..|+ .|+|.|++ .++.       -.+.+.+++|... -+.++.+|...-++.. 
T Consensus       204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs-  281 (421)
T KOG2671|consen  204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS-  281 (421)
T ss_pred             hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh-
Confidence            4578999999999999999999999988 99999999 6665       2466778888543 3567888887655543 


Q ss_pred             CceeeEEEEecc
Q psy14674        145 IQKVDIIISEWM  156 (519)
Q Consensus       145 ~~~~D~Ivs~~~  156 (519)
                      ...||.|||++.
T Consensus       282 n~~fDaIvcDPP  293 (421)
T KOG2671|consen  282 NLKFDAIVCDPP  293 (421)
T ss_pred             cceeeEEEeCCC
Confidence            368999999875

>KOG1099|consensus

Probab=94.50  E-value=0.037  Score=52.34  Aligned_cols=94  Identities=19%  Similarity=0.304  Sum_probs=62.3

Q ss_pred             CEEEEECCcccHHHHHHHHc--------CC--CEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeec------CC
Q psy14674         80 KIVLDIGCGTGILSMFAAKS--------GA--ARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVEL------PF  143 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~--------g~--~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~------~~  143 (519)
                      ++|+|+.+..|.++..+++.        +.  +++++||+.+|+-.          .+ |.-+++|++...-      -.
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----------~G-V~qlq~DIT~~stae~Ii~hf  111 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----------EG-VIQLQGDITSASTAEAIIEHF  111 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----------Cc-eEEeecccCCHhHHHHHHHHh
Confidence            68999999999999988875        12  13999999876543          22 7778888876421      01


Q ss_pred             CCceeeEEEEecccc----ccccc----hhHHHHHHHHhcccCcCeEEE
Q psy14674        144 GIQKVDIIISEWMGY----CLFYE----SMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~----~l~~e----~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +.++.|+|||+..-.    |-..|    +.+-+.+.-...+|||||.|+
T Consensus       112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV  160 (294)
T KOG1099|consen  112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV  160 (294)
T ss_pred             CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence            226899999976421    11111    122233444468999999998

>KOG1253|consensus

Probab=94.30  E-value=0.017  Score=60.42  Aligned_cols=105  Identities=23%  Similarity=0.224  Sum_probs=82.8

Q ss_pred             CCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDIII  152 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~Iv  152 (519)
                      ++-+|||.=|++|+-++..|+.  |..+|++-|.+ ..++..+++++.|+..+.++..+.|+..+-  .+.-...||+|=
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID  188 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID  188 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence            4568999999999999877775  78899999999 699999999999999998999998887652  221126899997


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .++.|.       ...+|+...+.++.||++......
T Consensus       189 LDPyGs-------~s~FLDsAvqav~~gGLL~vT~TD  218 (525)
T KOG1253|consen  189 LDPYGS-------PSPFLDSAVQAVRDGGLLCVTCTD  218 (525)
T ss_pred             cCCCCC-------ccHHHHHHHHHhhcCCEEEEEecc
Confidence            766543       344566666888999999876655

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=94.25  E-value=0.27  Score=53.11  Aligned_cols=82  Identities=20%  Similarity=0.117  Sum_probs=58.5

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-C----CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC---CCCc
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-G----AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP---FGIQ  146 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g----~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~  146 (519)
                      ..+..+|.|-.||+|.+...+++. +    ....+|.|++ .....|+.++--+|+...+....+|...-+..   ...+
T Consensus       184 ~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~  263 (489)
T COG0286         184 PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKG  263 (489)
T ss_pred             CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcc
Confidence            356679999999999876655544 2    2579999999 69999999998888764345555554433222   1236


Q ss_pred             eeeEEEEeccc
Q psy14674        147 KVDIIISEWMG  157 (519)
Q Consensus       147 ~~D~Ivs~~~~  157 (519)
                      +||.|++++..
T Consensus       264 ~~D~viaNPPf  274 (489)
T COG0286         264 KFDFVIANPPF  274 (489)
T ss_pred             ceeEEEeCCCC
Confidence            79999998753

>PTZ00357 methyltransferase; Provisional

Probab=93.97  E-value=0.32  Score=53.12  Aligned_cols=61  Identities=21%  Similarity=0.276  Sum_probs=46.2

Q ss_pred             eceEEEEeecceeeEEEEEEEEEEcCC--CceeEEecCCCCC---CCCceeEEEeec---ccccccCCC
Q psy14674        417 APFTLQVRRNDYVQALVTFFSVEFSKC--HKRIGFSTAPEAH---YTHWKQTVFYLN---EHLTVKKGE  477 (519)
Q Consensus       417 ~~f~~~~~~~~~~~g~~~wFd~~F~~~--~~~v~lsT~P~~~---~THWkQt~~~l~---~~~~v~~g~  477 (519)
                      +..+|++..++.+|||++|||+..-+.  ...|.|||-|...   -=-|-...|.|.   .+.-++.||
T Consensus       936 a~L~F~v~~d~vlHGFAGYFdAvLYkDVt~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq 1004 (1072)
T PTZ00357        936 ASLLFEVPPCGRCCGLAGYFSAVLYQSATAPATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQ 1004 (1072)
T ss_pred             EEEEEecCCCcceeeeeeEEEEEeecCCCccceEeecCCCCCCCCccceeeeEEecCccccceEeeccc
Confidence            456777788999999999999987643  2358899999544   235999999998   565666665

>KOG1562|consensus

Probab=93.80  E-value=0.16  Score=49.99  Aligned_cols=112  Identities=18%  Similarity=0.124  Sum_probs=77.7

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH--CCCC-CcEEEEEceeeEe--ecCCCCcee
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDK--NNLS-DVVTILKGKVEEV--ELPFGIQKV  148 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~--~~~~-~~i~~~~~d~~~~--~~~~~~~~~  148 (519)
                      +...++||-||-|.|......+++ -...+.-+|+. ..++..++....  .|+. .+|.+.-||...+  ..+.  ++|
T Consensus       119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~--~~~  196 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE--NPF  196 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc--CCc
Confidence            456789999999999887777766 35578889999 577777777653  2343 4688888886654  2222  789


Q ss_pred             eEEEEeccccccccch-hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        149 DIIISEWMGYCLFYES-MLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+|+.+.-.-....+. ..+.+..-+.+.||+||+++.....
T Consensus       197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec  238 (337)
T KOG1562|consen  197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC  238 (337)
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence            9999865432232222 2445667778999999998855444

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=93.50  E-value=0.12  Score=43.27  Aligned_cols=32  Identities=31%  Similarity=0.559  Sum_probs=27.8

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS  110 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s  110 (519)
                      +.....|||||.|.+...+.+.|. +=+|+|+-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence            456899999999999999999887 77899974

; GO: 0008168 methyltransferase activity

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=93.24  E-value=0.26  Score=50.44  Aligned_cols=96  Identities=20%  Similarity=0.259  Sum_probs=53.6

Q ss_pred             CCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         75 HLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        75 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ...++.+||-.|||. |.++..+|++ |+++|+++|.+ +-++.|++    .|....+..-..+..++....  +.+|+|
T Consensus       166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~--g~~D~v  239 (343)
T PRK09880        166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEK--GYFDVS  239 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccC--CCCCEE
Confidence            345788999999752 3455555554 77789999998 56666654    343211111111122111111  458988


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      +.. .+.        ...+....++|++||.++.
T Consensus       240 id~-~G~--------~~~~~~~~~~l~~~G~iv~  264 (343)
T PRK09880        240 FEV-SGH--------PSSINTCLEVTRAKGVMVQ  264 (343)
T ss_pred             EEC-CCC--------HHHHHHHHHHhhcCCEEEE
Confidence            753 221        1123344578899998873

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=92.98  E-value=0.22  Score=50.68  Aligned_cols=102  Identities=25%  Similarity=0.210  Sum_probs=74.7

Q ss_pred             CCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         79 GKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      ..+|||.=+|||+=++..|.. +..+|+.=|+| ++.+.+++|++.|...+ ..++..|+..+-.. ....||+|=.+++
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~-~~~~fd~IDiDPF  130 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHE-LHRAFDVIDIDPF  130 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHh-cCCCccEEecCCC
Confidence            789999999999988877665 55589999999 59999999999984444 56666777665222 1268999966666


Q ss_pred             ccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |.       ...++++..+.++.||++-.....
T Consensus       131 GS-------PaPFlDaA~~s~~~~G~l~vTATD  156 (380)
T COG1867         131 GS-------PAPFLDAALRSVRRGGLLCVTATD  156 (380)
T ss_pred             CC-------CchHHHHHHHHhhcCCEEEEEecc
Confidence            43       233455556778889988755443

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=92.81  E-value=0.11  Score=54.21  Aligned_cols=106  Identities=25%  Similarity=0.254  Sum_probs=61.6

Q ss_pred             CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEce-eeE-e-ecCCCCce
Q psy14674         74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK-VEE-V-ELPFGIQK  147 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d-~~~-~-~~~~~~~~  147 (519)
                      ..+.++.+||.+|||. |.++..+|++ |..+|++++.+ +..+.+++..   +. ..+.....+ ..+ + .+.. ...
T Consensus       180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~-~~~  254 (386)
T cd08283         180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTG-GRG  254 (386)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcC-CCC
Confidence            4567889999999987 7777777776 66679999998 5777777642   21 111111111 100 1 1111 136


Q ss_pred             eeEEEEeccccc------------cccchhHHHHHHHHhcccCcCeEEE
Q psy14674        148 VDIIISEWMGYC------------LFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       148 ~D~Ivs~~~~~~------------l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +|+|+...-+..            +.........+....+.|+++|.++
T Consensus       255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv  303 (386)
T cd08283         255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVS  303 (386)
T ss_pred             CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEE
Confidence            899987432110            0111112334566678999999887

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG2198|consensus

Probab=92.64  E-value=0.48  Score=48.29  Aligned_cols=115  Identities=12%  Similarity=0.059  Sum_probs=67.0

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc---C--CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec------
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS---G--AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL------  141 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~---g--~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~------  141 (519)
                      ..+.+|.+|||+.+-.|.=+..+.++   .  ...|+|=|.+ .=+...+.......- ..+.+...++...+-      
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~  229 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG  229 (375)
T ss_pred             cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence            46789999999999999766555554   2  2279998887 322222222222221 224444444443311      


Q ss_pred             -CCCCceeeEEEEecc--ccccc--c----------------chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        142 -PFGIQKVDIIISEWM--GYCLF--Y----------------ESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       142 -~~~~~~~D~Ivs~~~--~~~l~--~----------------e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                       +.....||-|+++..  +....  .                ....-.++....++||+||.+|-++|+
T Consensus       230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS  298 (375)
T KOG2198|consen  230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS  298 (375)
T ss_pred             chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence             111257999998653  11110  0                011124566667999999999999998

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=92.56  E-value=0.72  Score=45.86  Aligned_cols=82  Identities=26%  Similarity=0.278  Sum_probs=63.8

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--C-CCC
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--P-FGI  145 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--~-~~~  145 (519)
                      ......++...+|.--|.|..+..+... + .++++|+|.+ .+++.|+++....+  ++++++++++.++..  + .+.
T Consensus        17 ~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~i   94 (314)
T COG0275          17 ELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELGI   94 (314)
T ss_pred             HhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcCC
Confidence            4466778899999999999999877776 3 4689999999 69999999987755  679999998877621  1 112


Q ss_pred             ceeeEEEEec
Q psy14674        146 QKVDIIISEW  155 (519)
Q Consensus       146 ~~~D~Ivs~~  155 (519)
                      +++|-|+.+.
T Consensus        95 ~~vDGiL~DL  104 (314)
T COG0275          95 GKVDGILLDL  104 (314)
T ss_pred             CceeEEEEec
Confidence            5788887754

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=92.50  E-value=0.51  Score=48.36  Aligned_cols=111  Identities=18%  Similarity=0.161  Sum_probs=58.0

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc------------C-----CCEEEEEech--HHHHHHHHHHHHC----CCCC-cEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS------------G-----AARVIGIECS--NIVEYAKEIVDKN----NLSD-VVT  130 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~------------g-----~~~V~gvD~s--~~~~~A~~~~~~~----~~~~-~i~  130 (519)
                      ...+.-+|+|+||.+|..++.+...            +     .-+|+--|.-  +.-...+..-...    ...+ -+.
T Consensus        13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~   92 (334)
T PF03492_consen   13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS   92 (334)
T ss_dssp             TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred             CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence            3445569999999999877754422            1     1267888864  3333322221110    0111 012


Q ss_pred             EEEceeeEeecCCCCceeeEEEEecccccccc------------------------------------chhHHHHHHHHh
Q psy14674        131 ILKGKVEEVELPFGIQKVDIIISEWMGYCLFY------------------------------------ESMLDTVLYARD  174 (519)
Q Consensus       131 ~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~------------------------------------e~~l~~~l~~~~  174 (519)
                      -+-+..-.=-+|.  ++.|+++|....|.+..                                    ..++..+|+++.
T Consensus        93 gvpgSFy~rLfP~--~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra  170 (334)
T PF03492_consen   93 GVPGSFYGRLFPS--NSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARA  170 (334)
T ss_dssp             EEES-TTS--S-T--T-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCchhhhccCCC--CceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2333333223565  89999999665444431                                    144567889999


Q ss_pred             cccCcCeEEEccC
Q psy14674        175 KWLATNGLLFPDK  187 (519)
Q Consensus       175 r~LkpgG~lip~~  187 (519)
                      +-|+|||+|+...
T Consensus       171 ~ELv~GG~mvl~~  183 (334)
T PF03492_consen  171 EELVPGGRMVLTF  183 (334)
T ss_dssp             HHEEEEEEEEEEE
T ss_pred             heeccCcEEEEEE
Confidence            9999999998544

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=92.44  E-value=0.48  Score=48.89  Aligned_cols=96  Identities=30%  Similarity=0.344  Sum_probs=58.2

Q ss_pred             CCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEce-e-eEe-ecCCCCcee
Q psy14674         75 HLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK-V-EEV-ELPFGIQKV  148 (519)
Q Consensus        75 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d-~-~~~-~~~~~~~~~  148 (519)
                      ...++.+|+-+|||. |.++..+++. |+.+|+++|.+ +-++.|++....    +.+.....+ . ... .... ...+
T Consensus       165 ~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~-g~g~  239 (350)
T COG1063         165 AVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTG-GRGA  239 (350)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhC-CCCC
Confidence            344555999999996 7777766665 89999999999 588888874322    111111111 0 000 1221 1369


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      |+++- ..+        ....+....++++|||.++
T Consensus       240 D~vie-~~G--------~~~~~~~ai~~~r~gG~v~  266 (350)
T COG1063         240 DVVIE-AVG--------SPPALDQALEALRPGGTVV  266 (350)
T ss_pred             CEEEE-CCC--------CHHHHHHHHHHhcCCCEEE
Confidence            99974 222        1223445558999999887

>PRK11524 putative methyltransferase; Provisional

Probab=92.38  E-value=0.26  Score=49.35  Aligned_cols=46  Identities=30%  Similarity=0.342  Sum_probs=41.1

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDK  122 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~  122 (519)
                      -.+|..|||--||+|..+..+.+.|- +.+|+|++ +.++.|++++..
T Consensus       206 S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        206 SNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence            46899999999999999999999865 99999999 699999999754

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=91.85  E-value=0.25  Score=49.73  Aligned_cols=80  Identities=30%  Similarity=0.383  Sum_probs=54.8

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cC-C-CCce
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LP-F-GIQK  147 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~-~-~~~~  147 (519)
                      ....++...+|.=-|.|..+..+.+. +..+|+|+|.+ ++++.|++++...  .+++.++++++.++.  +. . ...+
T Consensus        16 L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~   93 (310)
T PF01795_consen   16 LNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINK   93 (310)
T ss_dssp             HT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-
T ss_pred             hCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCc
Confidence            34677889999999999999888765 55799999999 6999998876543  678999999987762  11 1 2258


Q ss_pred             eeEEEEec
Q psy14674        148 VDIIISEW  155 (519)
Q Consensus       148 ~D~Ivs~~  155 (519)
                      +|.|+.+.
T Consensus        94 ~dgiL~DL  101 (310)
T PF01795_consen   94 VDGILFDL  101 (310)
T ss_dssp             EEEEEEE-
T ss_pred             cCEEEEcc
Confidence            99998765

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=91.72  E-value=0.92  Score=49.04  Aligned_cols=42  Identities=31%  Similarity=0.371  Sum_probs=32.7

Q ss_pred             CCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHH
Q psy14674         76 LFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKE  118 (519)
Q Consensus        76 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~  118 (519)
                      ..++.+|+-+|||. |..+..+|+. |+ .|+++|.+ +-++.+++
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes  206 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES  206 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            35689999999996 5666666665 88 89999999 56666665

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=91.59  E-value=1.8  Score=42.68  Aligned_cols=128  Identities=13%  Similarity=0.102  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCC--CCcEEEEEceee
Q psy14674         60 EVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNL--SDVVTILKGKVE  137 (519)
Q Consensus        60 ~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~--~~~i~~~~~d~~  137 (519)
                      ..|+..+.+.+...... ....|+.+|||-=.-+..+......+++=+|..++++.-++.+++.+.  ..+.+++..|+.
T Consensus        64 ~~Rtr~~D~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~  142 (260)
T TIGR00027        64 AVRTRFFDDFLLAAVAA-GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR  142 (260)
T ss_pred             HHHHHHHHHHHHHHHhc-CCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence            45666666666543222 234799999998766655533222366666666788887888876553  456888888886


Q ss_pred             Ee---ecC---CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        138 EV---ELP---FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       138 ~~---~~~---~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +-   .+.   ......-+++++.+..++.. .....++..+.+...||+.++.+...
T Consensus       143 ~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~-~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       143 QDWPAALAAAGFDPTAPTAWLWEGLLMYLTE-EAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             hhHHHHHHhCCCCCCCCeeeeecchhhcCCH-HHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            21   111   11135668888988776654 45778888888888899999987655

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=91.45  E-value=0.35  Score=46.06  Aligned_cols=80  Identities=21%  Similarity=0.245  Sum_probs=54.9

Q ss_pred             CCCEEEEECCcccHHHHHH--HHcCCCEEEEEech-HHHHHHHHHHHHC-CCCCcEEEEEceeeEeecCC---CCceeeE
Q psy14674         78 KGKIVLDIGCGTGILSMFA--AKSGAARVIGIECS-NIVEYAKEIVDKN-NLSDVVTILKGKVEEVELPF---GIQKVDI  150 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~l--a~~g~~~V~gvD~s-~~~~~A~~~~~~~-~~~~~i~~~~~d~~~~~~~~---~~~~~D~  150 (519)
                      ++.++||||.|.-.+--.+  ...|. +.+|.|++ ..++.|+.++..| +++..|++....=.+--++.   ..+.||+
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~  156 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA  156 (292)
T ss_pred             CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence            5668999999976332112  22355 89999999 5899999999999 88877887654322211211   1378999


Q ss_pred             EEEecccc
Q psy14674        151 IISEWMGY  158 (519)
Q Consensus       151 Ivs~~~~~  158 (519)
                      ..|++..|
T Consensus       157 tlCNPPFh  164 (292)
T COG3129         157 TLCNPPFH  164 (292)
T ss_pred             EecCCCcc
Confidence            99998743

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=91.29  E-value=0.3  Score=46.38  Aligned_cols=42  Identities=40%  Similarity=0.498  Sum_probs=33.7

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHH
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKE  118 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~  118 (519)
                      -.+|..|||.-||+|..+..+.+.|. +.+|+|++ +.++.|++
T Consensus       189 t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  189 TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence            36789999999999999999999866 89999999 58888764

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK13699 putative methylase; Provisional

Probab=91.24  E-value=0.46  Score=45.85  Aligned_cols=46  Identities=30%  Similarity=0.331  Sum_probs=40.2

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDK  122 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~  122 (519)
                      -.+|..|||--||+|..+..+.+.|. +.+|+|++ +..+.|.++++.
T Consensus       161 s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        161 THPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence            35788999999999999999988866 89999999 588888888765

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=90.02  E-value=0.19  Score=42.19  Aligned_cols=43  Identities=14%  Similarity=0.118  Sum_probs=29.8

Q ss_pred             eeeEEEEecc---ccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        147 KVDIIISEWM---GYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       147 ~~D~Ivs~~~---~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +||+|+|-.+   .|.-.+++-+..+++.+...|+|||.+|.+--.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~   46 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP   46 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence            5899999654   232334456888999999999999999955443

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=89.83  E-value=2  Score=42.02  Aligned_cols=123  Identities=19%  Similarity=0.191  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH----cC--CCEEEEEech-----------------------H
Q psy14674         61 VRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK----SG--AARVIGIECS-----------------------N  111 (519)
Q Consensus        61 ~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~----~g--~~~V~gvD~s-----------------------~  111 (519)
                      .|...+..++.......-...|+|.||-.|..++.++.    .+  .+++++.|.-                       .
T Consensus        57 ~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~  136 (248)
T PF05711_consen   57 ERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNG  136 (248)
T ss_dssp             HHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCH
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhccc
Confidence            34455555554333233345799999999976655432    22  4578888741                       0


Q ss_pred             ----HHHHHHHHHHHCCC-CCcEEEEEceeeEeecCC-CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        112 ----IVEYAKEIVDKNNL-SDVVTILKGKVEEVELPF-GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       112 ----~~~~A~~~~~~~~~-~~~i~~~~~d~~~~~~~~-~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                          ..+..++++...|+ .+++.++.|.+.+. +|. ..+++-++..+.=    .+++ -...|..+...|.|||+++.
T Consensus       137 ~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dT-Lp~~p~~~IAll~lD~D----lYes-T~~aLe~lyprl~~GGiIi~  210 (248)
T PF05711_consen  137 YLAVSLEEVRENFARYGLLDDNVRFVKGWFPDT-LPDAPIERIALLHLDCD----LYES-TKDALEFLYPRLSPGGIIIF  210 (248)
T ss_dssp             HCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHH-CCC-TT--EEEEEE-------SHHH-HHHHHHHHGGGEEEEEEEEE
T ss_pred             ccccCHHHHHHHHHHcCCCcccEEEECCcchhh-hccCCCccEEEEEEecc----chHH-HHHHHHHHHhhcCCCeEEEE
Confidence                23333444444454 45799999998764 332 1144544433321    1233 34457788899999999999


Q ss_pred             cCCc
Q psy14674        186 DKAS  189 (519)
Q Consensus       186 ~~~~  189 (519)
                      +...
T Consensus       211 DDY~  214 (248)
T PF05711_consen  211 DDYG  214 (248)
T ss_dssp             SSTT
T ss_pred             eCCC
Confidence            9877

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=89.48  E-value=0.46  Score=48.07  Aligned_cols=64  Identities=27%  Similarity=0.404  Sum_probs=49.6

Q ss_pred             EEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee---cCCCCceeeEEEEec
Q psy14674         81 IVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE---LPFGIQKVDIIISEW  155 (519)
Q Consensus        81 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~~~D~Ivs~~  155 (519)
                      +++|+-||.|.+++-+.++|...|.|+|++ .+++..+.+..        ....+|+.++.   ++   +.+|+++..+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~---~~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLP---KDVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHH---HT-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------cccccccccccccccc---ccceEEEecc
Confidence            699999999999999999998889999999 46666666643        67888988874   33   2499999865

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG3924|consensus

Probab=89.30  E-value=0.98  Score=46.41  Aligned_cols=111  Identities=15%  Similarity=0.196  Sum_probs=69.9

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHH-------HHHHHHCCC-CCcEEEEEceeeEe
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYA-------KEIVDKNNL-SDVVTILKGKVEEV  139 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A-------~~~~~~~~~-~~~i~~~~~d~~~~  139 (519)
                      +.+...+.++....|+|.|-|.+..++|.. +.+.-+|+++. ...+.|       ++.++..|. .+.+..++++..+-
T Consensus       184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~  263 (419)
T KOG3924|consen  184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDP  263 (419)
T ss_pred             HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCH
Confidence            344567889999999999999887766654 67778899886 222222       223344444 45688888887653


Q ss_pred             ecCC-CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        140 ELPF-GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       140 ~~~~-~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ..-. -....++|+.+-+.   ..+ .+..=+.++..-+++|-+++
T Consensus       264 ~~v~eI~~eatvi~vNN~~---Fdp-~L~lr~~eil~~ck~gtrIi  305 (419)
T KOG3924|consen  264 KRVTEIQTEATVIFVNNVA---FDP-ELKLRSKEILQKCKDGTRII  305 (419)
T ss_pred             HHHHHHhhcceEEEEeccc---CCH-HHHHhhHHHHhhCCCcceEe
Confidence            2110 01468999887652   222 22222345667788888887

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=89.17  E-value=0.91  Score=51.10  Aligned_cols=107  Identities=13%  Similarity=0.110  Sum_probs=63.3

Q ss_pred             CCEEEEECCcccHHHHHHHH-------c-C-----CCEEEEEechH-----H----------HHHHHHHHHH-----CCC
Q psy14674         79 GKIVLDIGCGTGILSMFAAK-------S-G-----AARVIGIECSN-----I----------VEYAKEIVDK-----NNL  125 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~-------~-g-----~~~V~gvD~s~-----~----------~~~A~~~~~~-----~~~  125 (519)
                      .-+|||+|=|+|...+.+.+       . .     .-+++++|..+     +          .+.+++....     .|+
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            46999999999975543331       1 1     23789999632     1          1222222222     122


Q ss_pred             ------CC--cEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        126 ------SD--VVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       126 ------~~--~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                            .+  +++++.+|+.+. ++.-..++|+++.+.+.-.-..+-.-..++..+.++++|||.+.--
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~-~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~  205 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANEL-LPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF  205 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHH-HHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence                  11  245666777653 2211156999998876443333333456889999999999999833

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=88.81  E-value=1.8  Score=45.11  Aligned_cols=23  Identities=26%  Similarity=0.229  Sum_probs=18.4

Q ss_pred             hHHHHHHHHhcccCcCeEEEccC
Q psy14674        165 MLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       165 ~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ++..+|+.+.+-|.|||.++...
T Consensus       215 D~~~FL~~Ra~ELvpGG~mvl~~  237 (386)
T PLN02668        215 DLAGFLRARAQEMKRGGAMFLVC  237 (386)
T ss_pred             HHHHHHHHHHHHhccCcEEEEEE
Confidence            35678888889999999998543

>KOG2651|consensus

Probab=88.36  E-value=1.6  Score=44.56  Aligned_cols=44  Identities=34%  Similarity=0.411  Sum_probs=34.0

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHH
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEI  119 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~  119 (519)
                      ..+-+.|+|+|.|-|.++.+++-...-.|+|||-|. ..+.|++.
T Consensus       151 f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  151 FTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             hcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence            345579999999999999999876444999999994 55555443

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=88.09  E-value=1.3  Score=42.99  Aligned_cols=90  Identities=19%  Similarity=0.243  Sum_probs=65.7

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ..+.+|....|+|+-.|.++..+.+++- .|++||--.|.+-.-    ..   ..|+....|-..+....  .+.|..||
T Consensus       207 ~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~----dt---g~v~h~r~DGfk~~P~r--~~idWmVC  276 (358)
T COG2933         207 KRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLM----DT---GQVTHLREDGFKFRPTR--SNIDWMVC  276 (358)
T ss_pred             hhhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhh----cc---cceeeeeccCcccccCC--CCCceEEe
Confidence            4678899999999999999999999977 999999887654322    22   34788888877765422  78999999


Q ss_pred             eccccccccchhHHHHHHHHhcccCcC
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATN  180 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~Lkpg  180 (519)
                      +.+       +....+-..+..+|..|
T Consensus       277 DmV-------EkP~rv~~li~~Wl~nG  296 (358)
T COG2933         277 DMV-------EKPARVAALIAKWLVNG  296 (358)
T ss_pred             ehh-------cCcHHHHHHHHHHHHcc
Confidence            876       22334444455666655

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=87.32  E-value=1.5  Score=41.54  Aligned_cols=59  Identities=15%  Similarity=0.186  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc---CCCEEEEEech-HHHHHHHHHHH
Q psy14674         62 RTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS---GAARVIGIECS-NIVEYAKEIVD  121 (519)
Q Consensus        62 r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~---g~~~V~gvD~s-~~~~~A~~~~~  121 (519)
                      ..+.+++++. ...-..+-++.|-.||+|.+.-.+.-.   ..+.|+|-|++ ++++.|++|+.
T Consensus        36 AsEi~qR~l~-~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   36 ASEIFQRALH-YLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             HHHHHHHHHC-TSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            3555666552 222234569999999999765544322   35689999999 69999999874

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=87.19  E-value=1.3  Score=45.87  Aligned_cols=96  Identities=19%  Similarity=0.247  Sum_probs=54.1

Q ss_pred             hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCC
Q psy14674         72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPF  143 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~  143 (519)
                      ....+.++.+||-.|+|. |.++..+|++ |+++|+++|.+ +-++.|++    .|..   .++...-.++     .+..
T Consensus       185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~~  257 (371)
T cd08281         185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELTG  257 (371)
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHhC
Confidence            335577889999999752 3444455554 77689999998 46666654    3432   2222111111     1111


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                        +.+|+|+-.. +    ...    .+....+.|+++|.++.
T Consensus       258 --~g~d~vid~~-G----~~~----~~~~~~~~l~~~G~iv~  288 (371)
T cd08281         258 --GGVDYAFEMA-G----SVP----ALETAYEITRRGGTTVT  288 (371)
T ss_pred             --CCCCEEEECC-C----ChH----HHHHHHHHHhcCCEEEE
Confidence              3689987532 1    111    23333468899998873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=87.10  E-value=1.5  Score=42.94  Aligned_cols=100  Identities=15%  Similarity=0.238  Sum_probs=70.0

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCC-CCceeeE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPF-GIQKVDI  150 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~D~  150 (519)
                      .....|+.|+-+| -.-..++.++-.| +++|..||+++ ++....+.+++.|+.+ ++.+.-|+.+ ++|. -.++||+
T Consensus       148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~-plpe~~~~kFDv  224 (354)
T COG1568         148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRN-PLPEDLKRKFDV  224 (354)
T ss_pred             ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcc-cChHHHHhhCCe
Confidence            4556788999999 4445566555544 67999999995 9999999999999865 8888888887 4542 1268999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcC
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATN  180 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~Lkpg  180 (519)
                      .+.++....    ..+..++..--..||.-
T Consensus       225 fiTDPpeTi----~alk~FlgRGI~tLkg~  250 (354)
T COG1568         225 FITDPPETI----KALKLFLGRGIATLKGE  250 (354)
T ss_pred             eecCchhhH----HHHHHHHhccHHHhcCC
Confidence            998875221    23455554444455544

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=87.03  E-value=2.2  Score=41.96  Aligned_cols=68  Identities=19%  Similarity=0.270  Sum_probs=47.1

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcC------CCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeec
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSG------AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVEL  141 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g------~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~  141 (519)
                      ..+.++..++|+|||.|.++.++++.-      ...++.||-...-..+-..+........++=+..|+.++.+
T Consensus        14 ~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~l   87 (259)
T PF05206_consen   14 GLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLDL   87 (259)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccch
Confidence            345677899999999999999988862      34789999873222444444443322347778889888754

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=86.34  E-value=6  Score=37.53  Aligned_cols=103  Identities=22%  Similarity=0.344  Sum_probs=61.9

Q ss_pred             CCCCCCCEEEEECCccc----HHHHHH-HHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         74 KHLFKGKIVLDIGCGTG----ILSMFA-AKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG----~ls~~l-a~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      ..-...+.++++.|+.|    .+++.+ |++-..++++|-.. +-+...++.+...++.+.++|+.++..+.-++. -..
T Consensus        37 AAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~-~~~  115 (218)
T PF07279_consen   37 AAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPG-LKG  115 (218)
T ss_pred             hccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhh-ccC
Confidence            33445578899966544    233333 33333478888888 566677777888888887899998853322221 157


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +|+++.+.=     .++....+++.+ + +.|.|.++
T Consensus       116 iDF~vVDc~-----~~d~~~~vl~~~-~-~~~~GaVV  145 (218)
T PF07279_consen  116 IDFVVVDCK-----REDFAARVLRAA-K-LSPRGAVV  145 (218)
T ss_pred             CCEEEEeCC-----chhHHHHHHHHh-c-cCCCceEE
Confidence            899976542     233343666654 3 44555544

The function of this family is unknown.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=86.08  E-value=0.64  Score=47.25  Aligned_cols=66  Identities=15%  Similarity=0.235  Sum_probs=48.4

Q ss_pred             EEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         82 VLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        82 VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      |+|+-||.|.+++-+.++|..-+.++|+++ +++..+.+..     +  .++.+|+.++.... ...+|+++..+
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~-~~~~dvl~gg~   67 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD-IPDFDILLGGF   67 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh-CCCcCEEEecC
Confidence            689999999999999999987788999994 6666565532     2  44567888764321 13589998754

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=85.96  E-value=2.1  Score=43.18  Aligned_cols=94  Identities=23%  Similarity=0.245  Sum_probs=55.3

Q ss_pred             cCCCCCCCEEEEECCc-ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCCC
Q psy14674         73 NKHLFKGKIVLDIGCG-TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPFG  144 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~  144 (519)
                      ...+.++.+||..|+| .|..+..+|+. |. +|++++.+ +..+.+++    .|...   ++...-...     ..+. 
T Consensus       160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~---~~~~~~~~~~~~~~~~~~-  230 (338)
T cd08254         160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADE---VLNSLDDSPKDKKAAGLG-  230 (338)
T ss_pred             ccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCE---EEcCCCcCHHHHHHHhcC-
Confidence            3456778899998876 36666666665 65 79999988 56666544    34321   111110000     1122 


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                       +.+|+++...-     .    ...+....+.|+++|.++-
T Consensus       231 -~~~D~vid~~g-----~----~~~~~~~~~~l~~~G~~v~  261 (338)
T cd08254         231 -GGFDVIFDFVG-----T----QPTFEDAQKAVKPGGRIVV  261 (338)
T ss_pred             -CCceEEEECCC-----C----HHHHHHHHHHhhcCCEEEE
Confidence             56998875321     1    1234455689999999874

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=85.72  E-value=0.4  Score=43.12  Aligned_cols=101  Identities=21%  Similarity=0.155  Sum_probs=57.5

Q ss_pred             CCEEEEECCcccHHHHHHHHcCCCEEEEEechH--HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECSN--IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~--~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      |++++-+|+..=..=..+.+.|+++|..||.++  .-+..+.++.        ++...|... +.....++||.+.|-..
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s--------si~p~df~~-~~~~y~~~fD~~as~~s   72 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS--------SILPVDFAK-NWQKYAGSFDFAASFSS   72 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc--------cccHHHHHH-HHHHhhccchhhheech
Confidence            678999999977666677778999999999873  2222222111        111111110 01111167898877332


Q ss_pred             c-cc--------cccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        157 G-YC--------LFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       157 ~-~~--------l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      . |.        +....++.. +..+.++|||||.++.....
T Consensus        73 iEh~GLGRYGDPidp~Gdl~~-m~~i~~vLK~GG~L~l~vPv  113 (177)
T PF03269_consen   73 IEHFGLGRYGDPIDPIGDLRA-MAKIKCVLKPGGLLFLGVPV  113 (177)
T ss_pred             hccccccccCCCCCccccHHH-HHHHHHhhccCCeEEEEeec
Confidence            1 11        122344444 45667999999999865443

>KOG2078|consensus

Probab=85.61  E-value=0.51  Score=48.81  Aligned_cols=64  Identities=22%  Similarity=0.374  Sum_probs=55.5

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCc-EEEEEceeeEe
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDV-VTILKGKVEEV  139 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~-i~~~~~d~~~~  139 (519)
                      -..+|..|-|+-||-|-+++.+++.+ ++|++-|.+ ++++..+.+++.|.+... |+.+..|+.++
T Consensus       246 ~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F  311 (495)
T KOG2078|consen  246 LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF  311 (495)
T ss_pred             ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence            35678999999999999999999987 599999999 799999999999888765 78877776553

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=85.46  E-value=1.7  Score=46.88  Aligned_cols=96  Identities=21%  Similarity=0.218  Sum_probs=55.1

Q ss_pred             CCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE-----------ee--
Q psy14674         77 FKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE-----------VE--  140 (519)
Q Consensus        77 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~-----------~~--  140 (519)
                      .++.+||-+|+|. |..+..+++. |+ .|+++|.+ +-++.++.    .|.    +++.-+..+           +.  
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~----lGa----~~v~v~~~e~g~~~~gYa~~~s~~  232 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS----MGA----EFLELDFKEEGGSGDGYAKVMSEE  232 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccccceeecCHH
Confidence            3568999999986 4555555554 76 69999999 45555544    232    222222111           00  


Q ss_pred             --------cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        141 --------LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       141 --------~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                              ++.....+|+||...+.   .......-+.++.-+.+|||+.++
T Consensus       233 ~~~~~~~~~~e~~~~~DIVI~Tali---pG~~aP~Lit~emv~~MKpGsvIV  281 (511)
T TIGR00561       233 FIAAEMELFAAQAKEVDIIITTALI---PGKPAPKLITEEMVDSMKAGSVIV  281 (511)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECccc---CCCCCCeeehHHHHhhCCCCCEEE
Confidence                    11112469999886542   222222223455568899998866

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=85.41  E-value=1.7  Score=41.94  Aligned_cols=94  Identities=33%  Similarity=0.392  Sum_probs=52.9

Q ss_pred             CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--c-CCCCce
Q psy14674         74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--L-PFGIQK  147 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~-~~~~~~  147 (519)
                      ..+.++.+||..|+|+ |.....+++. | .+|++++.+ +..+.+++    .+..   .++.....+..  + ....+.
T Consensus       130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~  201 (271)
T cd05188         130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKE----LGAD---HVIDYKEEDLEEELRLTGGGG  201 (271)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHH----hCCc---eeccCCcCCHHHHHHHhcCCC
Confidence            3447889999999996 5555555554 5 589999998 45555543    2221   11111111000  0 001157


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +|+++...-.     .    ..+....+.|+++|.++
T Consensus       202 ~d~vi~~~~~-----~----~~~~~~~~~l~~~G~~v  229 (271)
T cd05188         202 ADVVIDAVGG-----P----ETLAQALRLLRPGGRIV  229 (271)
T ss_pred             CCEEEECCCC-----H----HHHHHHHHhcccCCEEE
Confidence            9999864321     0    22344457889999887

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK13699 putative methylase; Provisional

Probab=85.31  E-value=0.63  Score=44.93  Aligned_cols=55  Identities=16%  Similarity=0.181  Sum_probs=39.5

Q ss_pred             EEEEEceeeEe--ecCCCCceeeEEEEecccccc------------ccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        129 VTILKGKVEEV--ELPFGIQKVDIIISEWMGYCL------------FYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       129 i~~~~~d~~~~--~~~~~~~~~D~Ivs~~~~~~l------------~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ++++++|+.++  .+|+  +++|+||.++.....            ...+.+..++.++.|+|||||.++.
T Consensus         2 ~~l~~gD~le~l~~lpd--~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          2 SRFILGNCIDVMARFPD--NAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             CeEEechHHHHHHhCCc--cccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            36778888776  6776  899999998753210            0113355778899999999998874

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=85.19  E-value=2.8  Score=43.12  Aligned_cols=96  Identities=20%  Similarity=0.263  Sum_probs=53.9

Q ss_pred             cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE----e-ecCCC
Q psy14674         73 NKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE----V-ELPFG  144 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~----~-~~~~~  144 (519)
                      ...+.++.+||-.|||. |.++..+|++ |+.+|+++|.+ +-.+.+++    .|..   .++...-.+    + .... 
T Consensus       171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~i~~~~~-  242 (358)
T TIGR03451       171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT---HTVNSSGTDPVEAIRALTG-  242 (358)
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEEcCCCcCHHHHHHHHhC-
Confidence            34567899999998753 3445555555 77679999988 46666643    3432   222211111    1 1111 


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ...+|+|+- ..+    ...    .+....+.|++||.++.
T Consensus       243 ~~g~d~vid-~~g----~~~----~~~~~~~~~~~~G~iv~  274 (358)
T TIGR03451       243 GFGADVVID-AVG----RPE----TYKQAFYARDLAGTVVL  274 (358)
T ss_pred             CCCCCEEEE-CCC----CHH----HHHHHHHHhccCCEEEE
Confidence            135898875 222    111    12333468899998873

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK11524 putative methyltransferase; Provisional

Probab=85.15  E-value=0.6  Score=46.68  Aligned_cols=56  Identities=18%  Similarity=0.212  Sum_probs=40.0

Q ss_pred             EEEEEceeeEe--ecCCCCceeeEEEEecccccc-----c--------cchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        129 VTILKGKVEEV--ELPFGIQKVDIIISEWMGYCL-----F--------YESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       129 i~~~~~d~~~~--~~~~~~~~~D~Ivs~~~~~~l-----~--------~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      .+++++|+.++  .++.  +++|+|++++.....     .        +...+..++.++.++|||||.++..
T Consensus         9 ~~i~~gD~~~~l~~l~~--~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          9 KTIIHGDALTELKKIPS--ESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CEEEeccHHHHHHhccc--CcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            47888998875  4554  799999998753210     0        1123457889999999999998854

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=84.90  E-value=3.3  Score=42.01  Aligned_cols=91  Identities=19%  Similarity=0.243  Sum_probs=51.4

Q ss_pred             CCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-ecCCCCceeeEEEE
Q psy14674         78 KGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-ELPFGIQKVDIIIS  153 (519)
Q Consensus        78 ~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~D~Ivs  153 (519)
                      ++.+||..|||. |..+..++++ |..+|++++.+ +..+.+++    .+..   .++..+-..+ ......+.+|+++.
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~~vd~vld  237 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGAD---ETVNLARDPLAAYAADKGDFDVVFE  237 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchhhhhhhccCCCccEEEE
Confidence            788999998864 4555555554 76689999988 45555443    2332   2222111101 11111145999986


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ..-     ..    ..+....+.|+++|.++
T Consensus       238 ~~g-----~~----~~~~~~~~~L~~~G~~v  259 (339)
T cd08232         238 ASG-----AP----AALASALRVVRPGGTVV  259 (339)
T ss_pred             CCC-----CH----HHHHHHHHHHhcCCEEE
Confidence            322     11    12344458889999987

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=84.74  E-value=3.1  Score=38.06  Aligned_cols=106  Identities=16%  Similarity=0.194  Sum_probs=64.6

Q ss_pred             EECCcccHHHHHHHHc-C-CCEEEEEech--H-HHHH---HHHHHHHCCCCCcEEEEEceeeEeecCC--CCceeeEEEE
Q psy14674         84 DIGCGTGILSMFAAKS-G-AARVIGIECS--N-IVEY---AKEIVDKNNLSDVVTILKGKVEEVELPF--GIQKVDIIIS  153 (519)
Q Consensus        84 DiGcGtG~ls~~la~~-g-~~~V~gvD~s--~-~~~~---A~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~~~D~Ivs  153 (519)
                      =||-|.-.+++.++++ + ...++|.-..  + +.+.   +..+++...-.+.......|+..+....  ...+||.||-
T Consensus         2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF   81 (166)
T PF10354_consen    2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF   81 (166)
T ss_pred             eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence            3666666777777776 4 6677776554  2 3333   2344444322221233445666653221  2378999998


Q ss_pred             ecccccc----------ccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        154 EWMGYCL----------FYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l----------~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +......          .+...+..++..+.++|+++|.+.....+
T Consensus        82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~  127 (166)
T PF10354_consen   82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD  127 (166)
T ss_pred             eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            7652220          22346778888899999999999877776

>KOG2912|consensus

Probab=83.81  E-value=2.3  Score=42.51  Aligned_cols=75  Identities=23%  Similarity=0.308  Sum_probs=52.5

Q ss_pred             EEEECCcccHH-HHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCC-----CCceeeEEEEe
Q psy14674         82 VLDIGCGTGIL-SMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPF-----GIQKVDIIISE  154 (519)
Q Consensus        82 VLDiGcGtG~l-s~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~~~~D~Ivs~  154 (519)
                      =+|||.|...+ .+.=+++..-...|+|+.+ ....|..++.+|++...|.+++.......+.+     .+.-||.+.|+
T Consensus       106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN  185 (419)
T KOG2912|consen  106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN  185 (419)
T ss_pred             eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence            47999887643 2222333334789999995 78999999999999999998887543322221     12459999998


Q ss_pred             cc
Q psy14674        155 WM  156 (519)
Q Consensus       155 ~~  156 (519)
                      +.
T Consensus       186 PP  187 (419)
T KOG2912|consen  186 PP  187 (419)
T ss_pred             Cc
Confidence            75

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=82.83  E-value=3.3  Score=41.72  Aligned_cols=83  Identities=22%  Similarity=0.184  Sum_probs=48.2

Q ss_pred             CCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      .++++||-+|||. |.++..+|++ |+..|+++|.+ +.++.|.+.    .      ++  +..+ ...   ..+|+|+-
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~-~~~---~g~Dvvid  206 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEK-DPR---RDYRAIYD  206 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhh-ccC---CCCCEEEE
Confidence            3577899998763 4555656654 88778888887 455544421    1      11  1111 011   46898875


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      . .+.    .    ..+....++|+++|.++
T Consensus       207 ~-~G~----~----~~~~~~~~~l~~~G~iv  228 (308)
T TIGR01202       207 A-SGD----P----SLIDTLVRRLAKGGEIV  228 (308)
T ss_pred             C-CCC----H----HHHHHHHHhhhcCcEEE
Confidence            3 221    1    12344457899999987

>cd08230 glucose_DH Glucose dehydrogenase

Probab=82.64  E-value=3.1  Score=42.69  Aligned_cols=91  Identities=22%  Similarity=0.316  Sum_probs=49.7

Q ss_pred             CCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEec---h-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674         76 LFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIEC---S-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD  149 (519)
Q Consensus        76 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~---s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D  149 (519)
                      ..++.+||-+|+|. |.++..+|++ |+ +|++++.   + +-.+.++    +.|... +.....+..+.. .  .+.+|
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~----~~Ga~~-v~~~~~~~~~~~-~--~~~~d  240 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVE----ELGATY-VNSSKTPVAEVK-L--VGEFD  240 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHH----HcCCEE-ecCCccchhhhh-h--cCCCC
Confidence            45788999999863 4555555655 77 7999987   4 3344443    344321 111111111101 1  14689


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +|+-.. +    ..    ..+....+.|++||.++
T Consensus       241 ~vid~~-g----~~----~~~~~~~~~l~~~G~~v  266 (355)
T cd08230         241 LIIEAT-G----VP----PLAFEALPALAPNGVVI  266 (355)
T ss_pred             EEEECc-C----CH----HHHHHHHHHccCCcEEE
Confidence            887632 1    11    12444457899999887

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>KOG1201|consensus

Probab=82.26  E-value=3.6  Score=40.94  Aligned_cols=76  Identities=22%  Similarity=0.305  Sum_probs=56.4

Q ss_pred             CCCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCC
Q psy14674         76 LFKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPF  143 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~  143 (519)
                      ...|+.||-=|.|+|.   +++.+|++|+ ++...|++ +-.....+.++++|   ++....+|+.+.+        ...
T Consensus        35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~  110 (300)
T KOG1201|consen   35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK  110 (300)
T ss_pred             hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence            4568899999999994   7888899988 89999999 55555555566555   5788888887641        122


Q ss_pred             CCceeeEEEEec
Q psy14674        144 GIQKVDIIISEW  155 (519)
Q Consensus       144 ~~~~~D~Ivs~~  155 (519)
                      +.+.+|++|.+.
T Consensus       111 e~G~V~ILVNNA  122 (300)
T KOG1201|consen  111 EVGDVDILVNNA  122 (300)
T ss_pred             hcCCceEEEecc
Confidence            237899999865

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=82.15  E-value=1.6  Score=44.78  Aligned_cols=77  Identities=26%  Similarity=0.286  Sum_probs=46.6

Q ss_pred             CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEech----------------------HHHHHHHHHHHHCCCCCcEEEEE
Q psy14674         78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS----------------------NIVEYAKEIVDKNNLSDVVTILK  133 (519)
Q Consensus        78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s----------------------~~~~~A~~~~~~~~~~~~i~~~~  133 (519)
                      ...+||-+|||. | .++..|+++|.++++.+|.+                      +-++.|++++++.+-.-+++.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~  102 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV  102 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            457899999993 3 46778888999999999974                      12233444554433222355555


Q ss_pred             ceeeEeecCCCCceeeEEEEe
Q psy14674        134 GKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus       134 ~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      .++..-....-...+|+|+..
T Consensus       103 ~~~~~~~~~~~~~~~DlVid~  123 (339)
T PRK07688        103 QDVTAEELEELVTGVDLIIDA  123 (339)
T ss_pred             ccCCHHHHHHHHcCCCEEEEc
Confidence            544321111111568999874

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=82.12  E-value=4.9  Score=41.10  Aligned_cols=90  Identities=10%  Similarity=0.120  Sum_probs=50.9

Q ss_pred             CCCCCCEEEEECCcc-cHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         75 HLFKGKIVLDIGCGT-GILSMFAAK--SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        75 ~~~~~~~VLDiGcGt-G~ls~~la~--~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ...+|.+||-+|||. |.++..+++  .|+.+|+++|.+ +-++.|++    .+.   ...+    .+  +.. ...+|+
T Consensus       160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~--~~~-~~g~d~  225 (341)
T cd08237         160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DD--IPE-DLAVDH  225 (341)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hh--hhh-ccCCcE
Confidence            356789999999863 344444444  366789999998 45666553    121   1111    11  111 024898


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      |+- ..+.    . .....+....++|++||.++
T Consensus       226 viD-~~G~----~-~~~~~~~~~~~~l~~~G~iv  253 (341)
T cd08237         226 AFE-CVGG----R-GSQSAINQIIDYIRPQGTIG  253 (341)
T ss_pred             EEE-CCCC----C-ccHHHHHHHHHhCcCCcEEE
Confidence            874 3321    0 01223444457999999987

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=81.30  E-value=5.3  Score=39.09  Aligned_cols=71  Identities=25%  Similarity=0.299  Sum_probs=43.4

Q ss_pred             CCEEEEECCcccHHHHHHHHc---------CCCEEEEEechH-HHHHHHHHHHHC-----CCCCcEEEEEceeeEeecCC
Q psy14674         79 GKIVLDIGCGTGILSMFAAKS---------GAARVIGIECSN-IVEYAKEIVDKN-----NLSDVVTILKGKVEEVELPF  143 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~---------g~~~V~gvD~s~-~~~~A~~~~~~~-----~~~~~i~~~~~d~~~~~~~~  143 (519)
                      .-+|+|+|+|+|.++.-+.+.         ...+++-||+|+ +.+..++++...     ....+|.+. .++.+.+   
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~-~~l~~~p---   94 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWL-DDLEEVP---   94 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEE-SSGGCS----
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchh-hhhhccc---
Confidence            469999999999988866553         124899999995 777767666442     234456662 2332221   


Q ss_pred             CCceeeEEEEecc
Q psy14674        144 GIQKVDIIISEWM  156 (519)
Q Consensus       144 ~~~~~D~Ivs~~~  156 (519)
                         ..-+|+++-+
T Consensus        95 ---~~~~iiaNE~  104 (252)
T PF02636_consen   95 ---FPGFIIANEL  104 (252)
T ss_dssp             ---CCEEEEEESS
T ss_pred             ---CCEEEEEeee
Confidence               3467777655

; PDB: 4F3N_A 1ZKD_B.

>PLN02827 Alcohol dehydrogenase-like

Probab=81.29  E-value=3.4  Score=43.02  Aligned_cols=45  Identities=36%  Similarity=0.501  Sum_probs=30.4

Q ss_pred             CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHH
Q psy14674         74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKE  118 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~  118 (519)
                      ..+.+|.+||-.|+|. |.++..+|++ |+..|+++|.+ +-.+.|++
T Consensus       189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~  236 (378)
T PLN02827        189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT  236 (378)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            4577899999998753 3344444544 77679999987 55555543

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=81.01  E-value=2.1  Score=43.74  Aligned_cols=71  Identities=24%  Similarity=0.203  Sum_probs=51.5

Q ss_pred             CCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc-eeeEEEEec
Q psy14674         79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ-KVDIIISEW  155 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~D~Ivs~~  155 (519)
                      ..+++|+-||.|.+.+-+.++|..-+.++|+++ .++.-+.+...      -.++..|+.++....-.. .+|+|+..+
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp   75 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP   75 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence            358999999999999999999988899999995 66665555432      356667777653321112 789999855

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=80.48  E-value=2.3  Score=43.59  Aligned_cols=77  Identities=25%  Similarity=0.233  Sum_probs=48.2

Q ss_pred             CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEechH----------------------HHHHHHHHHHHCCCCCcEEEEE
Q psy14674         78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECSN----------------------IVEYAKEIVDKNNLSDVVTILK  133 (519)
Q Consensus        78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s~----------------------~~~~A~~~~~~~~~~~~i~~~~  133 (519)
                      .+++||-||||. | .++..++++|.++++.+|.+.                      -++.|++.+++.+-.-+|+.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~  102 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV  102 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence            467899999994 3 467788889999999998752                      1344455555544333456665


Q ss_pred             ceeeEeecCCCCceeeEEEEe
Q psy14674        134 GKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus       134 ~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      .++..-.+......+|+||..
T Consensus       103 ~~~~~~~~~~~~~~~DlVid~  123 (338)
T PRK12475        103 TDVTVEELEELVKEVDLIIDA  123 (338)
T ss_pred             ccCCHHHHHHHhcCCCEEEEc
Confidence            554321111111569999874

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=80.45  E-value=2.2  Score=43.31  Aligned_cols=97  Identities=25%  Similarity=0.237  Sum_probs=51.3

Q ss_pred             CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-ecCCCCceee
Q psy14674         74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-ELPFGIQKVD  149 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~D  149 (519)
                      ..+.++.+||-+|+|. |.++..++++ |+++|++++.+ +-.+.+++    .|....+.....+...+ .... ...+|
T Consensus       159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~-~~~~d  233 (339)
T cd08239         159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTS-GAGAD  233 (339)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhC-CCCCC
Confidence            4567799999998752 2344444444 77669999988 45555543    34321111111111111 1111 13699


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +|+...-     ..    ..+....+.|+++|.++
T Consensus       234 ~vid~~g-----~~----~~~~~~~~~l~~~G~~v  259 (339)
T cd08239         234 VAIECSG-----NT----AARRLALEAVRPWGRLV  259 (339)
T ss_pred             EEEECCC-----CH----HHHHHHHHHhhcCCEEE
Confidence            9975321     11    12233347889999887

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=80.43  E-value=3.8  Score=41.05  Aligned_cols=94  Identities=16%  Similarity=0.175  Sum_probs=62.1

Q ss_pred             CEEEEECCcc-cHHHHHH-HHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         80 KIVLDIGCGT-GILSMFA-AKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        80 ~~VLDiGcGt-G~ls~~l-a~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      .+|.-||.|. |..+..+ ...|+ .|+-+|.| +-++......     ..|++....+...+....  .+.|++|...+
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v--~~aDlvIgaVL  240 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV--KKADLVIGAVL  240 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh--hhccEEEEEEE
Confidence            4566777764 3333333 33355 99999999 6555544432     345777777766654333  68999998665


Q ss_pred             ccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                         +.......-+.+++.+.+|||+.++
T Consensus       241 ---IpgakaPkLvt~e~vk~MkpGsViv  265 (371)
T COG0686         241 ---IPGAKAPKLVTREMVKQMKPGSVIV  265 (371)
T ss_pred             ---ecCCCCceehhHHHHHhcCCCcEEE
Confidence               4555556666777778999999887

>PLN02740 Alcohol dehydrogenase-like

Probab=80.23  E-value=4.7  Score=41.95  Aligned_cols=46  Identities=28%  Similarity=0.478  Sum_probs=32.1

Q ss_pred             cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHH
Q psy14674         73 NKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKE  118 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~  118 (519)
                      ...+.+|.+||-+|+|. |.++..+|++ |+.+|+++|.+ +-++.|++
T Consensus       193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~  241 (381)
T PLN02740        193 TANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE  241 (381)
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence            35677899999999752 3344445554 77689999998 56666654

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=80.13  E-value=3  Score=39.38  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=27.1

Q ss_pred             CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEech
Q psy14674         78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS  110 (519)
Q Consensus        78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s  110 (519)
                      .+.+||-+|||. | ..+..+++.|.++++.+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            567899999994 4 46778888899999999975

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	519
1or8_A	340	Structure Of The Predominant Protein Arginine Methy		1e-146
1or8_A	340	Structure Of The Predominant Protein Arginine Methy		1e-41
1ori_A	343	Structure Of The Predominant Protein Arginine Methy		1e-146
1ori_A	343	Structure Of The Predominant Protein Arginine Methy		1e-41
1orh_A	353	Structure Of The Predominant Protein Arginine Methy		1e-146
1orh_A	353	Structure Of The Predominant Protein Arginine Methy		7e-42
3q7e_A	349	Crystal Structure Of Rat Protein Arginine Methyltra		1e-145
3q7e_A	349	Crystal Structure Of Rat Protein Arginine Methyltra		1e-41
1g6q_1	328	Crystal Structure Of Yeast Arginine Methyltransfera		2e-91
1g6q_1	328	Crystal Structure Of Yeast Arginine Methyltransfera		4e-14
2fyt_A	340	Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerev		2e-86
2fyt_A	340	Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerev		3e-14
1f3l_A	321	Crystal Structure Of The Conserved Core Of Protein		3e-83
1f3l_A	321	Crystal Structure Of The Conserved Core Of Protein		5e-12
4hc4_A	376	Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (		2e-49
4hc4_A	376	Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (		3e-04
3r0q_C	376	A Uniquely Open Conformation Revealed In The Crysta		8e-47
3b3j_A	480	The 2.55 A Crystal Structure Of The Apo Catalytic D		2e-43
3b3j_A	480	The 2.55 A Crystal Structure Of The Apo Catalytic D		5e-04
2y1w_A	348	Crystal Structure Of Coactivator Associated Arginin		3e-43
2y1w_A	348	Crystal Structure Of Coactivator Associated Arginin		6e-04
4ikp_A	341	Crystal Structure Of Coactivator-associated Arginin		3e-43
4ikp_A	341	Crystal Structure Of Coactivator-associated Arginin		5e-04
2v74_B	346	Crystal Structure Of Coactivator-Associated Arginin		3e-43
2v74_B	346	Crystal Structure Of Coactivator-Associated Arginin		6e-04
3b3f_A	341	The 2.2 A Crystal Structure Of The Catalytic Domain		4e-43
3b3f_A	341	The 2.2 A Crystal Structure Of The Catalytic Domain		6e-04
3f4k_A	257	Crystal Structure Of A Probable Methyltransferase F		5e-05
3svz_A	263	Crystal Structure Of Apo Bt_2972, A Methyltransfera		5e-05

>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 340

Iteration: 1
 Score =  513 bits (1322), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 239/363 (65%), Positives = 295/363 (81%), Gaps = 32/363 (8%)
Query: 30  ENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGT 89
           E    EDMTS+DYYFDSYAHFGIHEEMLKDEVRT+TYRNSM+HN+HLFK K+VLD+G GT
Sbjct: 9   EKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGT 68
Query: 90  GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149
           GIL MFAAK+GA +VIGIECS+I +YA +IV  N L  VVTI+KGKVEEVELP  ++KVD
Sbjct: 69  GILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELP--VEKVD 126
Query: 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQC 209
           IIISEWMGYCLFYESML+TVL+ARDKWLA +GL+FPD                       
Sbjct: 127 IIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD----------------------- 163
Query: 210 VRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVT 269
                  +A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT
Sbjct: 164 -------RATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVT 216
Query: 270 SSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA 329
           ++CL+KE+D+YT+   DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+
Sbjct: 217 NACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPES 276
Query: 330 HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESND 389
            YTHWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S D
Sbjct: 277 PYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTD 336
Query: 390 YQV 392
           Y++
Sbjct: 337 YRM 339

>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 340

Iteration: 1
 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 91/103 (88%)
Query: 417 APFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKG 476
           +PF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ YTHWKQTVFY+ ++LTVK G
Sbjct: 238 SPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTG 297
Query: 477 EEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR 519
           EE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DYRMR
Sbjct: 298 EEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 340

>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 343

Iteration: 1
 Score =  513 bits (1322), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 239/363 (65%), Positives = 295/363 (81%), Gaps = 32/363 (8%)
Query: 30  ENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGT 89
           E    EDMTS+DYYFDSYAHFGIHEEMLKDEVRT+TYRNSM+HN+HLFK K+VLD+G GT
Sbjct: 12  EKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGT 71
Query: 90  GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149
           GIL MFAAK+GA +VIGIECS+I +YA +IV  N L  VVTI+KGKVEEVELP  ++KVD
Sbjct: 72  GILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELP--VEKVD 129
Query: 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQC 209
           IIISEWMGYCLFYESML+TVL+ARDKWLA +GL+FPD                       
Sbjct: 130 IIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD----------------------- 166
Query: 210 VRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVT 269
                  +A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT
Sbjct: 167 -------RATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVT 219
Query: 270 SSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA 329
           ++CL+KE+D+YT+   DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+
Sbjct: 220 NACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPES 279
Query: 330 HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESND 389
            YTHWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S D
Sbjct: 280 PYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTD 339
Query: 390 YQV 392
           Y++
Sbjct: 340 YRM 342

>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 343

Iteration: 1
 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 91/103 (88%)
Query: 417 APFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKG 476
           +PF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ YTHWKQTVFY+ ++LTVK G
Sbjct: 241 SPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTG 300
Query: 477 EEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR 519
           EE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DYRMR
Sbjct: 301 EEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 343

>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 353

Iteration: 1
 Score =  513 bits (1321), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 238/363 (65%), Positives = 295/363 (81%), Gaps = 32/363 (8%)
Query: 30  ENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGT 89
           E    EDMTS+DYYFDSYAHFGIHEEMLKDEVRT+TYRNSM+HN+HLFK K+VLD+G GT
Sbjct: 22  EKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGT 81
Query: 90  GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149
           GIL MFAAK+GA +VIGIECS+I +YA +IV  N L  VVTI+KGKVEEVELP  ++KVD
Sbjct: 82  GILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELP--VEKVD 139
Query: 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQC 209
           IIISEWMGYCLFY+SML+TVL+ARDKWLA +GL+FPD                       
Sbjct: 140 IIISEWMGYCLFYQSMLNTVLHARDKWLAPDGLIFPD----------------------- 176
Query: 210 VRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVT 269
                  +A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT
Sbjct: 177 -------RATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVT 229
Query: 270 SSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA 329
           ++CL+KE+D+YT+   DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+
Sbjct: 230 NACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPES 289
Query: 330 HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESND 389
            YTHWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S D
Sbjct: 290 PYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTD 349
Query: 390 YQV 392
           Y++
Sbjct: 350 YRM 352

>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 353

Iteration: 1
 Score =  168 bits (425), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 91/103 (88%)
Query: 417 APFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKG 476
           +PF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ YTHWKQTVFY+ ++LTVK G
Sbjct: 251 SPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTG 310
Query: 477 EEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR 519
           EE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DYRMR
Sbjct: 311 EEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 353

>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine Methyltransferase 1 (Prmt1) M48l Mutant Length = 349

Iteration: 1
 Score =  511 bits (1317), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 238/363 (65%), Positives = 295/363 (81%), Gaps = 32/363 (8%)
Query: 30  ENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGT 89
           E    EDMTS+DYYFDSYAHFGIHEE+LKDEVRT+TYRNSM+HN+HLFK K+VLD+G GT
Sbjct: 18  EKPNAEDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGT 77
Query: 90  GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149
           GIL MFAAK+GA +VIGIECS+I +YA +IV  N L  VVTI+KGKVEEVELP  ++KVD
Sbjct: 78  GILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELP--VEKVD 135
Query: 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQC 209
           IIISEWMGYCLFYESML+TVL+ARDKWLA +GL+FPD                       
Sbjct: 136 IIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD----------------------- 172
Query: 210 VRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVT 269
                  +A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT
Sbjct: 173 -------RATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVT 225
Query: 270 SSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA 329
           ++CL+KE+D+YT+   DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+
Sbjct: 226 NACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPES 285
Query: 330 HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESND 389
            YTHWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S D
Sbjct: 286 PYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTD 345
Query: 390 YQV 392
           Y++
Sbjct: 346 YRM 348

>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine Methyltransferase 1 (Prmt1) M48l Mutant Length = 349

Iteration: 1
 Score =  167 bits (423), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 91/103 (88%)
Query: 417 APFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKG 476
           +PF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ YTHWKQTVFY+ ++LTVK G
Sbjct: 247 SPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTG 306
Query: 477 EEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR 519
           EE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DYRMR
Sbjct: 307 EEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 349

>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1 Length = 328

Iteration: 1
 Score =  333 bits (853), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 167/340 (49%), Positives = 220/340 (64%), Gaps = 34/340 (10%)
Query: 41  DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG 100
           DYYFDSY H+GIHEEML+D VRT++YRN++  NK LFK KIVLD+GCGTGILSMFAAK G
Sbjct: 1   DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60
Query: 101 AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCL 160
           A  VIG++ S+I+E AKE+V+ N  SD +T+L+GK+E+V LPF   KVDIIISEWMGY L
Sbjct: 61  AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPF--PKVDIIISEWMGYFL 118
Query: 161 FYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASL 220
            YESM+DTVLYARD +L   GL+FPD                              K S+
Sbjct: 119 LYESMMDTVLYARDHYLVEGGLIFPD------------------------------KCSI 148
Query: 221 FICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLY 280
            + G+ED QYK++K+ +W +VYGFD S    + + EP+VD V+   V T+S  L E DL 
Sbjct: 149 HLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLN 208
Query: 281 TITKADLSFTSPFTLQVRRNDYVQALVTFFSVEF--SKCHKRIGFSTAPEAHYTHWKQTV 338
           T+  +DL+F S F L  +R D +  +VT+F + F   K  + + FST P A YTHWKQT+
Sbjct: 209 TVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTI 268
Query: 339 FYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFK 378
           FY  + L  + G+ + G     PN +NNRDL+  +   F+
Sbjct: 269 FYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFE 308

>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1 Length = 328

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 419 FTLQVRRNDYVQALVTFFSVEFS--KCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKG 476
           F L  +R D +  +VT+F + F   K  + + FST P A YTHWKQT+FY  + L  + G
Sbjct: 221 FKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETG 280
Query: 477 EEVVGSFGMQPNPRNNRDLDFTVEVNFK 504
           + + G     PN +NNRDL+  +   F+
Sbjct: 281 DTIEGELVCSPNEKNNRDLNIKISYKFE 308

>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae) Protein Length = 340

Iteration: 1
 Score =  316 bits (809), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 154/335 (45%), Positives = 218/335 (65%), Gaps = 33/335 (9%)
Query: 43  YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
           YF SY H+GIHEEMLKD++RT +YR+ +Y N H+FK K+VLD+GCGTGILSMFAAK+GA 
Sbjct: 29  YFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 88
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
           +V+G++ S I+  A +I+  N L D +T++KGK+EEV LP  ++KVD+IISEWMGY L +
Sbjct: 89  KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLP--VEKVDVIISEWMGYFLLF 146
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
           ESMLD+VLYA++K+LA  G ++PD     IC I                          +
Sbjct: 147 ESMLDSVLYAKNKYLAKGGSVYPD-----ICTIS-------------------------L 176
Query: 223 CGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTI 282
             + D     D+I +WD+VYGF MSC+KK  I E +V+V+DPK +++  C +K ID +T 
Sbjct: 177 VAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTT 236
Query: 283 TKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSK-CHKRIGFSTAPEAHYTHWKQTVFYL 341
           + +DL F+S FTL++ R     A+  +F + F K CH R+ FST P++  THWKQTVF L
Sbjct: 237 SISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLL 296
Query: 342 NEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVN 376
            +  +VK GE + G   +  N ++ R L  T+ +N
Sbjct: 297 EKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLN 331

>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae) Protein Length = 340

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 400 GLRDRDCMYTKLYTI-VHAPFTLQVRRNDYVQALVTFFSVEFSK-CHKRIGFSTAPEAHY 457
           G++  DC  T +  +   + FTL++ R     A+  +F + F K CH R+ FST P++  
Sbjct: 227 GIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTK 286
Query: 458 THWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVN 502
           THWKQTVF L +  +VK GE + G   +  N ++ R L  T+ +N
Sbjct: 287 THWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLN 331

>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein Arginine Methyltransferase Prmt3 Length = 321

Iteration: 1
 Score =  305 bits (782), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 152/335 (45%), Positives = 213/335 (63%), Gaps = 33/335 (9%)
Query: 43  YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
           YF SY H+GIHEEMLKD+VRT +YR+ +Y N H+FK K+VLD+GCGTGILSMFAAK+GA 
Sbjct: 10  YFSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 69
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
           +VI ++ S I+  A +I+  N L D + ++KGK+EEV LP  ++KVD+IISEWMGY L +
Sbjct: 70  KVIAVDQSEILYQAMDIIRLNKLEDTIVLIKGKIEEVSLP--VEKVDVIISEWMGYFLLF 127
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
           ESMLD+VLYA+ K+LA  G ++PD     IC I                          +
Sbjct: 128 ESMLDSVLYAKSKYLAKGGSVYPD-----ICTIS-------------------------L 157
Query: 223 CGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTI 282
             + D     D+I +WD+VYGF+MSC+KK  I E +V+VVD K +++  C +K ID +T 
Sbjct: 158 VAVSDVSKHADRIAFWDDVYGFNMSCMKKAVIPEAVVEVVDHKTLISDPCDIKHIDCHTT 217
Query: 283 TKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSK-CHKRIGFSTAPEAHYTHWKQTVFYL 341
           + +DL F+S FTL+  +     A+  +F + F K CH R+ FST P++  THWKQT+F L
Sbjct: 218 SISDLEFSSDFTLRTTKTAMCTAVAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTIFLL 277
Query: 342 NEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVN 376
            +   VK GE + G   +  N ++ R L  T+ +N
Sbjct: 278 EKPFPVKAGEALKGKITVHKNKKDPRSLIVTLTLN 312

>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein Arginine Methyltransferase Prmt3 Length = 321

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 401 LRDRDCMYTKLYTI-VHAPFTLQVRRNDYVQALVTFFSVEFSK-CHKRIGFSTAPEAHYT 458
           ++  DC  T +  +   + FTL+  +     A+  +F + F K CH R+ FST P++  T
Sbjct: 209 IKHIDCHTTSISDLEFSSDFTLRTTKTAMCTAVAGYFDIYFEKNCHNRVVFSTGPQSTKT 268
Query: 459 HWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVN 502
           HWKQT+F L +   VK GE + G   +  N ++ R L  T+ +N
Sbjct: 269 HWKQTIFLLEKPFPVKAGEALKGKITVHKNKKDPRSLIVTLTLN 312

>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevisiae) Length = 376

Iteration: 1
 Score =  193 bits (491), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 170/344 (49%), Gaps = 51/344 (14%)
Query: 43  YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
           Y++ Y+   +HEEM+ D VRT  YR  +  N    +GK VLD+G GTGILS+F A++GA 
Sbjct: 48  YYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGAR 107
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
           RV  +E S I + A+E+V  N L D V +L G VE VELP   ++VD I+SEWMGY L +
Sbjct: 108 RVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP---EQVDAIVSEWMGYGLLH 164
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
           ESML +VL+AR KWL   GLL P  A LFI  I D                         
Sbjct: 165 ESMLSSVLHARTKWLKEGGLLLPASAELFIVPISD------------------------- 199
Query: 223 CGIEDRQYKEDKITWWDNV---YGFDMSCIKKIAIK------EPLVDVVDPKQVVTSSCL 273
                 Q  E ++ +W  V   YG DMSC++  A +      E +V  +  + V+     
Sbjct: 200 ------QMLEWRLGFWSQVKQHYGVDMSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQR 253
Query: 274 LKEIDLYTI---TKADLSFTSPFTLQVRRNDYVQALVTFFSVEF--SKCHKRIGFSTAPE 328
             +++L       + +      F      +  +     +F V F   +  K +  ST+P 
Sbjct: 254 FAQLELSRAGLEQELEAGVGGRFRCSCYGSAPMHGFAIWFQVTFPGGESEKPLVLSTSPF 313
Query: 329 AHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQP---NPRNNRDL 369
              THWKQ + YLNE + V++  +V G   + P   NPR  R L
Sbjct: 314 HPATHWKQALLYLNEPVQVEQDTDVSGEITLLPSRDNPRRLRVL 357

>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevisiae) Length = 376

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 429 VQALVTFFSVEF--SKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQ 486
           +     +F V F   +  K +  ST+P    THWKQ + YLNE + V++  +V G   + 
Sbjct: 286 MHGFAIWFQVTFPGGESEKPLVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSGEITLL 345
Query: 487 P---NPRNNRDL 495
           P   NPR  R L
Sbjct: 346 PSRDNPRRLRVL 357

>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 Length = 376

Iteration: 1
 Score =  184 bits (468), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 198/362 (54%), Gaps = 43/362 (11%)
Query: 43  YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
           YF +Y+     ++ML D VR   Y N+++ NKH F+GK VLD+G G+GIL++++A++GA 
Sbjct: 28  YFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGAR 87
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
           +V  +E + + ++A+ +V  NNL  +V +++G VE++ LP   +KVD+IISEWMGY L  
Sbjct: 88  KVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP---EKVDVIISEWMGYFLLR 144
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
           ESM D+V+ ARD+WL   G+++P  A +++  I+     +              K + F 
Sbjct: 145 ESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADR--------------KRNDFD 190
Query: 223 CGIEDRQYKEDKITWWDNVYGFDMSCI--------KKIAIKEPLVDVVDPKQVVTSSCLL 274
             + D     D+I    + YG DM  +        +K  I+  + + ++P+Q++ +  ++
Sbjct: 191 GAMADWHNFSDEIK---SYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIV 247
Query: 275 KEIDLYTITKADLSFTSPFTLQVRRNDYVQ--ALVTFFSVEFS-----KCHKRIGFSTAP 327
           KE+D  T + +++         V   ++ +      +F V+FS        + I  +TAP
Sbjct: 248 KEMDCLTASVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAP 307
Query: 328 -EAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSE 386
            E H THW Q VF ++  + V++G+ +     M  +  N+R ++  +E+N     CE+ E
Sbjct: 308 SEQHCTHWGQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLME--IELN-----CEIKE 360
Query: 387 SN 388
           ++
Sbjct: 361 AS 362

>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of Coactivator-Associated Arginine Methyl Transferase I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered) Length = 480

Iteration: 1
 Score =  173 bits (438), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 174/342 (50%), Gaps = 35/342 (10%)
Query: 43  YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
           YF  Y +    + M++D VRT TY+ ++  N   FK KIVLD+GCG+GILS FAA++GA 
Sbjct: 123 YFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR 182
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
           ++  +E S + ++A+ +V  NNL+D + ++ GKVEEV LP   ++VDIIISE MGY LF 
Sbjct: 183 KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISEPMGYMLFN 239
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
           E ML++ L+A+ K+L  +G +FP    + +    D Q                    L++
Sbjct: 240 ERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQ--------------------LYM 278
Query: 223 CGIEDRQYKEDKITWWDNVYGFDMSCIKKIAI----KEPLVDVVDPKQVVTSSCLLKEID 278
                 Q+ +    +  + +G D+S ++  A+    ++P+VD  D + ++ +  +   ++
Sbjct: 279 -----EQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIR-ILMAKSVKYTVN 332
Query: 279 LYTITKADL-SFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQT 337
                + DL     PF   +  +  V  L  +F V F      +  STAP    THW Q 
Sbjct: 333 FLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQV 392
Query: 338 VFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 379
                  L  K G+ + G+  +  N R + D+    +V+  G
Sbjct: 393 RCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG 434

>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of Coactivator-Associated Arginine Methyl Transferase I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered) Length = 480

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 415 VHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVK 474
           +  PF   +  +  V  L  +F V F      +  STAP    THW Q        L  K
Sbjct: 344 IEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAK 403
Query: 475 KGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 505
            G+ + G+  +  N R + D+    +V+  G
Sbjct: 404 AGDTLSGTCLLIANKRQSYDISIVAQVDQTG 434

>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Indole Inhibitor Length = 348

Iteration: 1
 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 174/342 (50%), Gaps = 35/342 (10%)
Query: 43  YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
           YF  Y +    + M++D VRT TY+ ++  N   FK KIVLD+GCG+GILS FAA++GA 
Sbjct: 15  YFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR 74
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
           ++  +E S + ++A+ +V  NNL+D + ++ GKVEEV LP   ++VDIIISE MGY LF 
Sbjct: 75  KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISEPMGYMLFN 131
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
           E ML++ L+A+ K+L  +G +FP    + +    D Q                    L++
Sbjct: 132 ERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQ--------------------LYM 170
Query: 223 CGIEDRQYKEDKITWWDNVYGFDMSCIKKIAI----KEPLVDVVDPKQVVTSSCLLKEID 278
                 Q+ +    +  + +G D+S ++  A+    ++P+VD  D + ++ +  +   ++
Sbjct: 171 -----EQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIR-ILMAKSVKYTVN 224
Query: 279 LYTITKADL-SFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQT 337
                + DL     PF   +  +  V  L  +F V F      +  STAP    THW Q 
Sbjct: 225 FLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQV 284
Query: 338 VFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 379
                  L  K G+ + G+  +  N R + D+    +V+  G
Sbjct: 285 RCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG 326

>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Indole Inhibitor Length = 348

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 415 VHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVK 474
           +  PF   +  +  V  L  +F V F      +  STAP    THW Q        L  K
Sbjct: 236 IEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAK 295
Query: 475 KGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 505
            G+ + G+  +  N R + D+    +V+  G
Sbjct: 296 AGDTLSGTCLLIANKRQSYDISIVAQVDQTG 326

>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine Methyltransferase 1 Length = 341

Iteration: 1
 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 174/342 (50%), Gaps = 35/342 (10%)
Query: 43  YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
           YF  Y +    + M++D VRT TY+ ++  N   FK KIVLD+GCG+GILS FAA++GA 
Sbjct: 10  YFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR 69
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
           ++  +E S + ++A+ +V  NNL+D + ++ GKVEEV LP   ++VDIIISE MGY LF 
Sbjct: 70  KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISEPMGYMLFN 126
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
           E ML++ L+A+ K+L  +G +FP    + +    D Q                    L++
Sbjct: 127 ERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQ--------------------LYM 165
Query: 223 CGIEDRQYKEDKITWWDNVYGFDMSCIKKIAI----KEPLVDVVDPKQVVTSSCLLKEID 278
                 Q+ +    +  + +G D+S ++  A+    ++P+VD  D + ++ +  +   ++
Sbjct: 166 -----EQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIR-ILMAKSVKYTVN 219
Query: 279 LYTITKADL-SFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQT 337
                + DL     PF   +  +  V  L  +F V F      +  STAP    THW Q 
Sbjct: 220 FLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQV 279
Query: 338 VFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 379
                  L  K G+ + G+  +  N R + D+    +V+  G
Sbjct: 280 RCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG 321

>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine Methyltransferase 1 Length = 341

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 415 VHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVK 474
           +  PF   +  +  V  L  +F V F      +  STAP    THW Q        L  K
Sbjct: 231 IEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAK 290
Query: 475 KGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 505
            G+ + G+  +  N R + D+    +V+  G
Sbjct: 291 AGDTLSGTCLLIANKRQSYDISIVAQVDQTG 321

>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine Methyltransferase 1 (Carm1), In Complex With S-Adenosyl- Homocysteine Length = 346

Iteration: 1
 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 174/342 (50%), Gaps = 35/342 (10%)
Query: 43  YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
           YF  Y +    + M++D VRT TY+ ++  N   FK KIVLD+GCG+GILS FAA++GA 
Sbjct: 6   YFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR 65
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
           ++  +E S + ++A+ +V  NNL+D + ++ GKVEEV LP   ++VDIIISE MGY LF 
Sbjct: 66  KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISEPMGYMLFN 122
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
           E ML++ L+A+ K+L  +G +FP    + +    D Q                    L++
Sbjct: 123 ERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQ--------------------LYM 161
Query: 223 CGIEDRQYKEDKITWWDNVYGFDMSCIKKIAI----KEPLVDVVDPKQVVTSSCLLKEID 278
                 Q+ +    +  + +G D+S ++  A+    ++P+VD  D + ++ +  +   ++
Sbjct: 162 -----EQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIR-ILMAKSVKYTVN 215
Query: 279 LYTITKADL-SFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQT 337
                + DL     PF   +  +  V  L  +F V F      +  STAP    THW Q 
Sbjct: 216 FLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQV 275
Query: 338 VFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 379
                  L  K G+ + G+  +  N R + D+    +V+  G
Sbjct: 276 RCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG 317

>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine Methyltransferase 1 (Carm1), In Complex With S-Adenosyl- Homocysteine Length = 346

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 415 VHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVK 474
           +  PF   +  +  V  L  +F V F      +  STAP    THW Q        L  K
Sbjct: 227 IEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAK 286
Query: 475 KGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 505
            G+ + G+  +  N R + D+    +V+  G
Sbjct: 287 AGDTLSGTCLLIANKRQSYDISIVAQVDQTG 317

>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of Coactivator- Associated Arginine Methyl Transferase I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine Length = 341

Iteration: 1
 Score =  172 bits (436), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 174/342 (50%), Gaps = 35/342 (10%)
Query: 43  YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
           YF  Y +    + M++D VRT TY+ ++  N   FK KIVLD+GCG+GILS FAA++GA 
Sbjct: 11  YFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR 70
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
           ++  +E S + ++A+ +V  NNL+D + ++ GKVEEV LP   ++VDIIISE MGY LF 
Sbjct: 71  KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISEPMGYMLFN 127
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
           E ML++ L+A+ K+L  +G +FP    + +    D Q                    L++
Sbjct: 128 ERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQ--------------------LYM 166
Query: 223 CGIEDRQYKEDKITWWDNVYGFDMSCIKKIAI----KEPLVDVVDPKQVVTSSCLLKEID 278
                 Q+ +    +  + +G D+S ++  A+    ++P+VD  D + ++ +  +   ++
Sbjct: 167 -----EQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIR-ILMAKSVKYTVN 220
Query: 279 LYTITKADL-SFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQT 337
                + DL     PF   +  +  V  L  +F V F      +  STAP    THW Q 
Sbjct: 221 FLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQV 280
Query: 338 VFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 379
                  L  K G+ + G+  +  N R + D+    +V+  G
Sbjct: 281 RCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG 322

>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of Coactivator- Associated Arginine Methyl Transferase I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine Length = 341

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 415 VHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVK 474
           +  PF   +  +  V  L  +F V F      +  STAP    THW Q        L  K
Sbjct: 232 IEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAK 291
Query: 475 KGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 505
            G+ + G+  +  N R + D+    +V+  G
Sbjct: 292 AGDTLSGTCLLIANKRQSYDISIVAQVDQTG 322

>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From Bacteroides Thetaiotaomicron. Northeast Structural Genomics Target Btr309 Length = 257

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 82  VLDIGCGTGILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
           + DIGCGTG  ++F A     ++ GI+   + +E   E   K N +D V  + G ++   
Sbjct: 50  IADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD--N 107
Query: 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLF 191
           LPF  +++D+I SE   Y + +E  ++       K+L   G +   +AS F
Sbjct: 108 LPFQNEELDLIWSEGAIYNIGFERGMNE----WSKYLKKGGFIAVSEASWF 154

>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From Bacteroides Thetaiotaomicron Length = 263

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 82  VLDIGCGTGILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
           + DIGCGTG  ++F A     ++ GI+   + +E   E   K N +D V  + G ++   
Sbjct: 56  IADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD--N 113
Query: 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLF 191
           LPF  +++D+I SE   Y + +E  ++       K+L   G +   +AS F
Sbjct: 114 LPFQNEELDLIWSEGAIYNIGFERGMNE----WSKYLKKGGFIAVSEASWF 160

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	519
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	1e-141
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	8e-35
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	1e-133
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	3e-28
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	1e-131
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	4e-24
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	1e-124
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	5e-29
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	1e-122
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	4e-28
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	1e-115
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	3e-24
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	2e-50
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	6e-10
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	9e-35
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-25
3f4k_A	257	Putative methyltransferase; structural genomics, P	1e-18
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	8e-15
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-13
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	1e-12
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	4e-12
3ocj_A	305	Putative exported protein; structural genomics, PS	4e-12
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	8e-12
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	1e-11
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	1e-11
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-11
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	6e-11
2p7i_A	250	Hypothetical protein; putative methyltransferase,	6e-11
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	9e-11
3cc8_A	230	Putative methyltransferase; structural genomics, j	2e-10
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	3e-10
3lpm_A	259	Putative methyltransferase; structural genomics, p	3e-10
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	3e-10
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	5e-10
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	9e-10
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	9e-10
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	3e-09
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	1e-08
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	1e-08
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	1e-08
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	1e-08
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	2e-08
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	3e-08
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	7e-08
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	9e-08
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	1e-07
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	1e-07
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	1e-07
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	1e-07
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	1e-07
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	1e-07
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	2e-07
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	2e-07
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	2e-07
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	2e-07
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	2e-07
3i9f_A	170	Putative type 11 methyltransferase; structural gen	3e-07
1xxl_A	239	YCGJ protein; structural genomics, protein structu	3e-07
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	3e-07
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	3e-07
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	4e-07
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	7e-07
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	7e-07
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	1e-06
3ege_A	261	Putative methyltransferase from antibiotic biosyn	1e-06
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	1e-06
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	1e-06
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	1e-06
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	1e-06
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	2e-06
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	2e-06
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	3e-06
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	5e-06
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	6e-06
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	6e-06
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	6e-06
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	6e-06
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	7e-06
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	7e-06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	7e-06
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	8e-06
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	9e-06
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	9e-06
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	9e-06
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	9e-06
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	1e-05
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	1e-05
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	1e-05
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	1e-05
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	1e-05
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	1e-05
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	1e-05
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	2e-05
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	2e-05
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	2e-05
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	2e-05
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	4e-05
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	4e-05
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	4e-05
2h00_A	254	Methyltransferase 10 domain containing protein; st	6e-05
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	7e-05
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	7e-05
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	9e-05
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	9e-05
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	1e-04
3lcc_A	235	Putative methyl chloride transferase; halide methy	1e-04
3ll7_A	410	Putative methyltransferase; methytransferase, stru	1e-04
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	1e-04
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	4e-04
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	4e-04
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	4e-04
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	5e-04
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	5e-04
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	5e-04
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	6e-04
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	6e-04
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	8e-04
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	9e-04
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	9e-04
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	9e-04

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349

 Score =  410 bits (1056), Expect = e-141
 Identities = 240/377 (63%), Positives = 299/377 (79%), Gaps = 34/377 (9%)

Query: 16  SNSKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKH 75
            +     Q   S+  N   EDMTS+DYYFDSYAHFGIHEE+LKDEVRT+TYRNSM+HN+H
Sbjct: 6   HHHMSCGQAESSEKPNA--EDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRH 63

Query: 76  LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGK 135
           LFK K+VLD+G GTGIL MFAAK+GA +VIGIECS+I +YA +IV  N L  VVTI+KGK
Sbjct: 64  LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGK 123

Query: 136 VEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGI 195
           VEEVELP  ++KVDIIISEWMGYCLFYESML+TVL+ARDKWLA +GL             
Sbjct: 124 VEEVELP--VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGL------------- 168

Query: 196 EDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIK 255
                            +FPD+A+L++  IEDRQYK+ KI WW+NVYGFDMSCIK +AIK
Sbjct: 169 -----------------IFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIK 211

Query: 256 EPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFS 315
           EPLVDVVDPKQ+VT++CL+KE+D+YT+   DL+FTSPF LQV+RNDYV ALV +F++EF+
Sbjct: 212 EPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFT 271

Query: 316 KCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEV 375
           +CHKR GFST+PE+ YTHWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT+++
Sbjct: 272 RCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDL 331

Query: 376 NFKGELCEMSESNDYQV 392
           +FKG+LCE+S S DY++
Sbjct: 332 DFKGQLCELSCSTDYRM 348

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349

 Score =  132 bits (334), Expect = 8e-35
 Identities = 69/104 (66%), Positives = 91/104 (87%)

Query: 416 HAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKK 475
            +PF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ YTHWKQTVFY+ ++LTVK 
Sbjct: 246 TSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKT 305

Query: 476 GEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR 519
           GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DYRMR
Sbjct: 306 GEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 349

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328

 Score =  388 bits (998), Expect = e-133
 Identities = 165/349 (47%), Positives = 221/349 (63%), Gaps = 34/349 (9%)

Query: 41  DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG 100
           DYYFDSY H+GIHEEML+D VRT++YRN++  NK LFK KIVLD+GCGTGILSMFAAK G
Sbjct: 1   DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60

Query: 101 AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCL 160
           A  VIG++ S+I+E AKE+V+ N  SD +T+L+GK+E+V LP    KVDIIISEWMGY L
Sbjct: 61  AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLP--FPKVDIIISEWMGYFL 118

Query: 161 FYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASL 220
            YESM+DTVLYARD +L   G                              ++FPDK S+
Sbjct: 119 LYESMMDTVLYARDHYLVEGG------------------------------LIFPDKCSI 148

Query: 221 FICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLY 280
            + G+ED QYK++K+ +W +VYGFD S    + + EP+VD V+   V T+S  L E DL 
Sbjct: 149 HLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLN 208

Query: 281 TITKADLSFTSPFTLQVRRNDYVQALVTFFSVEF--SKCHKRIGFSTAPEAHYTHWKQTV 338
           T+  +DL+F S F L  +R D +  +VT+F + F   K  + + FST P A YTHWKQT+
Sbjct: 209 TVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTI 268

Query: 339 FYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSES 387
           FY  + L  + G+ + G     PN +NNRDL+  +   F+    + +  
Sbjct: 269 FYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNSR 317

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328

 Score =  113 bits (285), Expect = 3e-28
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 7/110 (6%)

Query: 416 HAPFTLQVRRNDYVQALVTFFSVEF--SKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTV 473
            + F L  +R D +  +VT+F + F   K  + + FST P A YTHWKQT+FY  + L  
Sbjct: 218 KSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDA 277

Query: 474 KKGEEVVGSFGMQPNPRNNRDLDFTVEVNFK-----GELCEMSESNDYRM 518
           + G+ + G     PN +NNRDL+  +   F+     G          Y M
Sbjct: 278 ETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNSRSRKNEGSYLM 327

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340

 Score =  382 bits (983), Expect = e-131
 Identities = 154/369 (41%), Positives = 226/369 (61%), Gaps = 36/369 (9%)

Query: 20  PSQQNGD-SKDENVQCEDMTSRD--YYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHL 76
            S  +   S     +  D+   +   YF SY H+GIHEEMLKD++RT +YR+ +Y N H+
Sbjct: 3   SSHHHHHHSSGLVPRGSDLQEDEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHI 62

Query: 77  FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKV 136
           FK K+VLD+GCGTGILSMFAAK+GA +V+G++ S I+  A +I+  N L D +T++KGK+
Sbjct: 63  FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI 122

Query: 137 EEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIE 196
           EEV LP  ++KVD+IISEWMGY L +ESMLD+VLYA++K+LA  G               
Sbjct: 123 EEVHLP--VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGS-------------- 166

Query: 197 DLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKE 256
                           ++PD  ++ +  + D     D+I +WD+VYGF MSC+KK  I E
Sbjct: 167 ----------------VYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPE 210

Query: 257 PLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSK 316
            +V+V+DPK +++  C +K ID +T + +DL F+S FTL++ R     A+  +F + F K
Sbjct: 211 AVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEK 270

Query: 317 -CHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEV 375
            CH R+ FST P++  THWKQTVF L +  +VK GE + G   +  N ++ R L  T+ +
Sbjct: 271 NCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTL 330

Query: 376 NFKGELCEM 384
           N   +   +
Sbjct: 331 NNSTQTYGL 339

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340

 Score =  102 bits (255), Expect = 4e-24
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 1/97 (1%)

Query: 415 VHAPFTLQVRRNDYVQALVTFFSVEFSK-CHKRIGFSTAPEAHYTHWKQTVFYLNEHLTV 473
             + FTL++ R     A+  +F + F K CH R+ FST P++  THWKQTVF L +  +V
Sbjct: 243 FSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSV 302

Query: 474 KKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEM 510
           K GE + G   +  N ++ R L  T+ +N   +   +
Sbjct: 303 KAGEALKGKVTVHKNKKDPRSLTVTLTLNNSTQTYGL 339

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348

 Score =  365 bits (938), Expect = e-124
 Identities = 108/353 (30%), Positives = 171/353 (48%), Gaps = 39/353 (11%)

Query: 35  EDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSM 94
            + +S   YF  Y +    + M++D VRT TY+ ++  N   FK KIVLD+GCG+GILS 
Sbjct: 7   TEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSF 66

Query: 95  FAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154
           FAA++GA ++  +E S + ++A+ +V  NNL+D + ++ GKVEEV LP   ++VDIIISE
Sbjct: 67  FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISE 123

Query: 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLF 214
            MGY LF E ML++ L+A+ K+L  +G +FP    + +    D Q   +           
Sbjct: 124 PMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFT-------- 174

Query: 215 PDKASLFICGIEDRQYKEDKITWW--DNVYGFDMSCIKKIAIKE----PLVDVVDPKQVV 268
                              K  +W   + +G D+S ++  A+ E    P+VD  D + ++
Sbjct: 175 -------------------KANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILM 215

Query: 269 TSSCLLKEIDLYTITKAD-LSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAP 327
             S     ++     + D      PF   +  +  V  L  +F V F      +  STAP
Sbjct: 216 AKSV-KYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAP 274

Query: 328 EAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGE 380
               THW Q        L  K G+ + G+  +  N R + D+    +V+  G 
Sbjct: 275 TEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGS 327

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348

 Score =  116 bits (292), Expect = 5e-29
 Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 3/106 (2%)

Query: 416 HAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKK 475
             PF   +  +  V  L  +F V F      +  STAP    THW Q        L  K 
Sbjct: 237 EIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKA 296

Query: 476 GEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSES---NDYRM 518
           G+ + G+  +  N R + D+    +V+  G             +R 
Sbjct: 297 GDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRY 342

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480

 Score =  365 bits (939), Expect = e-122
 Identities = 109/369 (29%), Positives = 176/369 (47%), Gaps = 39/369 (10%)

Query: 19  KPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFK 78
           K  + +   +    +  + +S   YF  Y +    + M++D VRT TY+ ++  N   FK
Sbjct: 99  KTCRGHTLERSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFK 158

Query: 79  GKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEE 138
            KIVLD+GCG+GILS FAA++GA ++  +E S + ++A+ +V  NNL+D + ++ GKVEE
Sbjct: 159 DKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE 218

Query: 139 VELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDL 198
           V LP   ++VDIIISE MGY LF E ML++ L+A+ K+L  +G +FP    + +    D 
Sbjct: 219 VSLP---EQVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDE 274

Query: 199 QGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWW--DNVYGFDMSCIKKIAIKE 256
           Q   +                              K  +W   + +G D+S ++  A+ E
Sbjct: 275 QLYMEQFT---------------------------KANFWYQPSFHGVDLSALRGAAVDE 307

Query: 257 ----PLVDVVDPKQVVTSSCLLKEIDLYTITKAD-LSFTSPFTLQVRRNDYVQALVTFFS 311
               P+VD  D + ++  S     ++     + D      PF   +  +  V  L  +F 
Sbjct: 308 YFRQPVVDTFDIRILMAKSV-KYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFD 366

Query: 312 VEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDF 371
           V F      +  STAP    THW Q        L  K G+ + G+  +  N R + D+  
Sbjct: 367 VAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISI 426

Query: 372 TVEVNFKGE 380
             +V+  G 
Sbjct: 427 VAQVDQTGS 435

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480

 Score =  116 bits (291), Expect = 4e-28
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 416 HAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKK 475
             PF   +  +  V  L  +F V F      +  STAP    THW Q        L  K 
Sbjct: 345 EIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKA 404

Query: 476 GEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMS---ESNDYRM 518
           G+ + G+  +  N R + D+    +V+  G         ++  +R 
Sbjct: 405 GDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRY 450

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376

 Score =  344 bits (883), Expect = e-115
 Identities = 105/388 (27%), Positives = 188/388 (48%), Gaps = 36/388 (9%)

Query: 16  SNSKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKH 75
           SN+            +   +       YF +Y+     ++ML D VR   Y N+++ NKH
Sbjct: 1   SNAGGRAAGTGGGGPSAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKH 60

Query: 76  LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGK 135
            F+GK VLD+G G+GIL++++A++GA +V  +E + + ++A+ +V  NNL  +V +++G 
Sbjct: 61  HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGS 120

Query: 136 VEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGI 195
           VE++ LP   +KVD+IISEWMGY L  ESM D+V+ ARD+WL   G+++P  A +++  I
Sbjct: 121 VEDISLP---EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPI 177

Query: 196 EDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIK 255
           +     +                              +      + YG DM  + K   +
Sbjct: 178 KSNIADRKRNDFD-----------------GAMADWHNFSDEIKSYYGVDMGVLTKPFAE 220

Query: 256 E--------PLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQV--RRNDYVQA 305
           E         + + ++P+Q++ +  ++KE+D  T + +++         V    +  +  
Sbjct: 221 EQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIEEVRSNVTSVINMEHTRLCG 280

Query: 306 LVTFFSVEFS-----KCHKRIGFSTAP-EAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGM 359
              +F V+FS        + I  +TAP E H THW Q VF ++  + V++G+ +     M
Sbjct: 281 FGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLLM 340

Query: 360 QPNPRNNRDLDFTVEVNFKGELCEMSES 387
             +  N+R ++  +    K       ES
Sbjct: 341 SRSKENHRLMEIELNCEIKEASGNPKES 368

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376

 Score =  103 bits (257), Expect = 3e-24
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 415 VHAPFTLQV-RRNDYVQALVTFFSVEFS-----KCHKRIGFSTAP-EAHYTHWKQTVFYL 467
           V +  T  +   +  +     +F V+FS        + I  +TAP E H THW Q VF +
Sbjct: 263 VRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIM 322

Query: 468 NEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSES--NDYRM 518
           +  + V++G+ +     M  +  N+R ++  +    K       ES    Y +
Sbjct: 323 SNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYFI 375

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A Length = 745

 Score =  183 bits (464), Expect = 2e-50
 Identities = 40/343 (11%), Positives = 104/343 (30%), Gaps = 47/343 (13%)

Query: 52  IHEEMLKDEVRTMTYRNSMYH-----NKHLFKGKIVLDIGCGTGILSMFAAKSGA----- 101
           ++    +D+++   Y  ++            K  ++  +G G G +     KS       
Sbjct: 378 VYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNT 437

Query: 102 ---------ARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELP---FGIQKVD 149
                     ++  +E +       + ++       VTI++  +  +       G ++ D
Sbjct: 438 FRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPD 497

Query: 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQC 209
           II+SE +G     E +    L     +L    +  P K + ++  I              
Sbjct: 498 IIVSELLGSFGDNE-LSPECLDGVTGFLKPTTISIPQKYTSYVKPIMSTH---------- 546

Query: 210 VRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPL-----VDVVDP 264
              +     +  I  +        +     +     +    +  ++  +     V +   
Sbjct: 547 ---IHQTIKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKY 603

Query: 265 KQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFS 324
             +  ++  +   +      +    +      + RN  +     +F ++    +K +  S
Sbjct: 604 IPLAETTKPVFTFEHPNFMNSSNERSDSIEFVMDRNADLMGFAGYFDLQL---YKTVMLS 660

Query: 325 TAPEAHYTH---WKQTVFYLNEHLTVKKGEEVVGSFGMQPNPR 364
             P  H      W   V  L + L V +G+ +      + +  
Sbjct: 661 IEPSTHTPGMVSWFPAVIPLRDQLRVGEGDRISLKIDRKVDNT 703

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A Length = 745

 Score = 60.8 bits (146), Expect = 6e-10
 Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 6/86 (6%)

Query: 408 YTKLYTIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTH---WKQTV 464
           +              + RN  +     +F ++    +K +  S  P  H      W   V
Sbjct: 621 FMNSSNERSDSIEFVMDRNADLMGFAGYFDLQL---YKTVMLSIEPSTHTPGMVSWFPAV 677

Query: 465 FYLNEHLTVKKGEEVVGSFGMQPNPR 490
             L + L V +G+ +      + +  
Sbjct: 678 IPLRDQLRVGEGDRISLKIDRKVDNT 703

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score =  130 bits (329), Expect = 9e-35
 Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 35  EDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSM 94
           E+ T  D+  +    F  + E        +T + ++    +L +  ++ DIGCGTG  +M
Sbjct: 4   ENKTIHDFELNLICDFFSNMERQGPGSPEVTLK-ALSFIDNLTEKSLIADIGCGTGGQTM 62

Query: 95  FAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
             A     +V G++     ++       ++ L + VT + G ++  +LPF  +++D+I S
Sbjct: 63  VLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMD--DLPFRNEELDLIWS 120

Query: 154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLF 191
           E   Y + +E  L+       K+L   G L   + S F
Sbjct: 121 EGAIYNIGFERGLN----EWRKYLKKGGYLAVSECSWF 154

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score =  104 bits (260), Expect = 2e-25
 Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 19/167 (11%)

Query: 37  MTSRDY----YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGIL 92
           +    Y    +F+ Y+     +E LK        +  +      F  K VLD+GCG G  
Sbjct: 3   LKENKYDDKHFFEQYSQMPRSKEGLKAAGEWHELKKML----PDFNQKTVLDLGCGFGWH 58

Query: 93  SMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151
            ++AA+ GA +V+GI+ S  ++  AK        S VV   +  +E  ++       +++
Sbjct: 59  CIYAAEHGAKKVLGIDLSERMLTEAKR----KTTSPVVCYEQKAIE--DIAIEPDAYNVV 112

Query: 152 ISEWMGYCLFYESMLDTVLYARDKWLATNG-LLFPDKASLFICGIED 197
           +S      L Y +  D +       L ++G  +F  +  +F      
Sbjct: 113 LSSLA---LHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQ 156

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 84.5 bits (209), Expect = 1e-18
 Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 8/150 (5%)

Query: 35  EDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSM 94
            + +  D+ F    ++    +         T R ++     L     + DIGCGTG  ++
Sbjct: 4   NNTSIHDFDFSFICNYFKLLKRQGPGSPEAT-RKAVSFINELTDDAKIADIGCGTGGQTL 62

Query: 95  FAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
           F A     ++ GI+   + +E   E   K N +D V  + G ++   LPF  +++D+I S
Sbjct: 63  FLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD--NLPFQNEELDLIWS 120

Query: 154 EWMGYCLFYESMLDTVLYARDKWLATNGLL 183
           E   Y + +E  ++       K+L   G +
Sbjct: 121 EGAIYNIGFERGMNEWS----KYLKKGGFI 146

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 73.0 bits (179), Expect = 8e-15
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
             + +G I+LD+G     L +   + G     I  E      + A + V+ + L + + +
Sbjct: 11  SFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQV 70

Query: 132 LKGKVEEVELPFGIQKVDIIISEWMGYCL 160
                          +V +I    MG  L
Sbjct: 71  RLANGLAAFEETD--QVSVITIAGMGGRL 97

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 70.7 bits (174), Expect = 3e-14
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 10/82 (12%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGI---ECSNIVEYAKEIVDKNNLSDVVT 130
           + + K   V D+G G+GIL++ A K GA  V+     + S  +  A+E    N + D+  
Sbjct: 56  RAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDES--MTAAEENAALNGIYDIAL 113

Query: 131 ILKGKVEEVELPFGIQKVDIII 152
                + +V+  F     D+I+
Sbjct: 114 QKTSLLADVDGKF-----DLIV 130

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.0 bits (173), Expect = 5e-13
 Identities = 73/535 (13%), Positives = 149/535 (27%), Gaps = 168/535 (31%)

Query: 26  DSKDENVQ--CEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTY---RNSMYHNKHLFK-- 78
             ++E VQ   E++   +Y F       I  E  +  + T  Y   R+ +Y++  +F   
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSP---IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129

Query: 79  ---------------------GKIVLD--IGCGTGILSMFAAKSGAARVIGIECSNIVEY 115
                                  +++D  +G G   +   A          ++C      
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV---ALD--VCLSYKVQC------ 178

Query: 116 AKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM--GYCLFYESMLDTV--LY 171
                                   ++ F I         W+    C   E++L+ +  L 
Sbjct: 179 ------------------------KMDFKIF--------WLNLKNCNSPETVLEMLQKLL 206

Query: 172 ARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYK 231
            +   +  N     D +S     I  +Q          +R L            + + Y+
Sbjct: 207 YQ---IDPNWTSRSDHSSNIKLRIHSIQAE--------LRRLL-----------KSKPYE 244

Query: 232 E-----DKITWWDN--VYGFDMSCIKKIAI---KEPLVDVVDPKQVVTSSCLLKEIDLYT 281
                   +   +      F++SC  KI +    + + D +              I   +
Sbjct: 245 NCLLVLLNV--QNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATT-------THI---S 290

Query: 282 ITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKR----IGFSTAPE-AHYTHWKQ 336
           +    ++ T      +    Y+         E    + R    I  S     A + +WK 
Sbjct: 291 LDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK- 348

Query: 337 TVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDL--DFTV---EVNFKGEL-----CEMSE 386
                  H+   K   ++ S      P   R +    +V     +    L      ++ +
Sbjct: 349 -------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 387 SNDYQVDDRLAALGLRDRD-CMYTKLYTIVHAPFTLQVRRNDYVQ---ALVTFFSVEFSK 442
           S+   V ++L    L ++     T   +I      L+V+  +      ++V        K
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKEST--ISIPSIYLELKVKLENEYALHRSIVD--HYNIPK 457

Query: 443 CHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDF 497
                         Y +      ++  HL   +  E +  F          D  F
Sbjct: 458 TFDSDDLIPPYLDQYFYS-----HIGHHLKNIEHPERMTLF-----RMVFLDFRF 502

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 66.7 bits (163), Expect = 1e-12
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 16/128 (12%)

Query: 29  DENVQCEDMTSRDYY--FDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIG 86
            EN +  D                 I+  + ++ +                     +DIG
Sbjct: 3   SENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFG-----------ITAGTCIDIG 51

Query: 87  CGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI 145
            G G LS+  AK     +  ++ S ++ E A + +   NL+D + I++G V    +P   
Sbjct: 52  SGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVH--NIPIED 109

Query: 146 QKVDIIIS 153
              D+I+S
Sbjct: 110 NYADLIVS 117

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 65.3 bits (159), Expect = 4e-12
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
            ++ K + + DIG     L  FA K+  A+  I  E      + A++ V  + L++ + +
Sbjct: 17  SYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDV 76

Query: 132 LKGKVEEVELPFGIQKVDIIISEWMGYCL 160
            KG    V        +D I+   MG  L
Sbjct: 77  RKGNGLAVIEKK--DAIDTIVIAGMGGTL 103

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 65.9 bits (160), Expect = 4e-12
 Identities = 21/144 (14%), Positives = 52/144 (36%), Gaps = 8/144 (5%)

Query: 46  SYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGA--AR 103
               +     +L    R   +R ++   +HL  G +V  + CG     +    S     +
Sbjct: 88  ERVFYERLPAVLATRERHGHFRRAL--QRHLRPGCVVASVPCGWMSELLALDYSACPGVQ 145

Query: 104 VIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
           ++GI+     ++ A  +   + L+  +T+ +      +L    +  D++ S  +      
Sbjct: 146 LVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW--KLDTR-EGYDLLTSNGLNIYEPD 202

Query: 163 ESMLDTVLYARDKWLATNGLLFPD 186
           ++ +  +     + L   G L   
Sbjct: 203 DARVTELYRRFWQALKPGGALVTS 226

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 65.0 bits (157), Expect = 8e-12
 Identities = 22/159 (13%), Positives = 60/159 (37%), Gaps = 12/159 (7%)

Query: 38  TSRDYYFDSY-AHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSM-F 95
             R + + +Y  ++G      +D       R  +      F+G+ VLD+GC  G L++  
Sbjct: 12  QQRKFQYGNYCKYYGYRNPSCEDG------RLRVL-KPEWFRGRDVLDLGCNVGHLTLSI 64

Query: 96  AAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154
           A K G +R++G++  + ++  A++ +      ++    +    +       ++    + +
Sbjct: 65  ACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAE--GEEGTTTVRK 122

Query: 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFIC 193
              +     +    +   +      +  +FP+       
Sbjct: 123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTG 161

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 5/115 (4%)

Query: 44  FDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGA-A 102
              Y H     E L+   +  T    ++H+     G  VL+ GCG G  ++  AK+   A
Sbjct: 3   LTEYVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDA 62

Query: 103 RVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM 156
            +  I+ S   +E A+E  +KN + + V  L+  +    LPF     D I   ++
Sbjct: 63  EITSIDISPESLEKARENTEKNGIKN-VKFLQANIF--SLPFEDSSFDHIFVCFV 114

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 63.4 bits (154), Expect = 1e-11
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
            ++ KG  +LD+G     L +F  + G     I  E      + A + V ++ L+  + +
Sbjct: 17  NYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDV 76

Query: 132 LKGKVEEVELPFGIQKVDIIISEWMGYCL 160
                           +D I    MG  L
Sbjct: 77  RLANGLSAFEEA--DNIDTITICGMGGRL 103

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 19/128 (14%)

Query: 35  EDMTSRDY------YFDSYAHF--GIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIG 86
           E MT  ++       +DS A F     +EM     R+       +  +++ K   VLD+G
Sbjct: 5   ECMTKFNWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIP---FFEQYVKKEAEVLDVG 61

Query: 87  CGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI 145
           CG G  +   +++G  + +G++ S  +++  KE          ++ +KG +    LPF  
Sbjct: 62  CGDGYGTYKLSRTG-YKAVGVDISEVMIQKGKE----RGEGPDLSFIKGDLS--SLPFEN 114

Query: 146 QKVDIIIS 153
           ++ + I++
Sbjct: 115 EQFEAIMA 122

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 15/84 (17%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGI---ECSNIVEYAKEIVDKNNLSDVVT 130
           +HL  G  VLD+G G+G+L++ A K G  + +G+        +  A+    +N +     
Sbjct: 116 RHLRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMV--LPQAEANAKRNGVRP--- 169

Query: 131 ILKGKVEEVELP--FGIQKVDIII 152
               +  E  L         D+++
Sbjct: 170 ----RFLEGSLEAALPFGPFDLLV 189

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 61.8 bits (150), Expect = 6e-11
 Identities = 25/156 (16%), Positives = 50/156 (32%), Gaps = 30/156 (19%)

Query: 38  TSRDY--YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMF 95
            SR+Y       A          D +     R         F+   +L++G   G  +  
Sbjct: 4   ISRNYDQEIKDTAGHKYAYNFDFDVMHPFMVR----AFTPFFRPGNLLELGSFKGDFTSR 59

Query: 96  AAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154
             +     +  +E     + +A+  +        +T +  + E+ +LP   ++ D I+  
Sbjct: 60  LQEHF-NDITCVEASEEAISHAQGRLKDG-----ITYIHSRFEDAQLP---RRYDNIV-- 108

Query: 155 WMGYCLFYESM------LDTVLYARDKWLATNGLLF 184
                     +      +  +    D WLA  G LF
Sbjct: 109 ------LTHVLEHIDDPVALLKRINDDWLAEGGRLF 138

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 61.7 bits (150), Expect = 9e-11
 Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 46  SYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVI 105
            Y      +  + D    +T    M     +  G  VLD+GCG G  ++  A +   RV 
Sbjct: 31  GYWEDAGADVSVDDATDRLTDE--MIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVT 88

Query: 106 GIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG 157
           GI  S   V  A        L++ VT         +LPF     D + +    
Sbjct: 89  GISISRPQVNQANARATAAGLANRVTFSYADAM--DLPFEDASFDAVWALESL 139

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 25/105 (23%)

Query: 65  TYRNSMYHNKHLF---------------KGKIVLDIGCGTGILSMFAAKSGAARVIGIEC 109
           + +NS+Y  K                  + K VLDIGC +G L     ++G  RV GIE 
Sbjct: 4   SPKNSLYEEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENG-TRVSGIEA 62

Query: 110 S-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
                E AKE +D   L D        +E +++P+  ++ D +I 
Sbjct: 63  FPEAAEQAKEKLDHVVLGD--------IETMDMPYEEEQFDCVIF 99

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 10/118 (8%)

Query: 37  MTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFA 96
           M  ++YY     +  I+ +  +  + T+         K++ K   VLD+ CG G  S   
Sbjct: 1   MGFKEYYRVFPTYTDINSQEYRSRIETLE----PLLMKYMKKRGKVLDLACGVGGFSFLL 56

Query: 97  AKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
              G   V+G++ S +++  A+E       +  V  + G     +L F  +  D +I 
Sbjct: 57  EDYG-FEVVGVDISEDMIRKAREYAKSRESN--VEFIVGDAR--KLSFEDKTFDYVIF 109

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 78  KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV 136
           +   ++D+  G GI+ +  +    A+++G+E    + + AK  V  N L D + I++  +
Sbjct: 49  RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL 108

Query: 137 EEVELPFGIQKVDIIIS 153
           +++      ++ DI+  
Sbjct: 109 KKITDLIPKERADIVTC 125

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 15/122 (12%)

Query: 37  MTSRDY----YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGIL 92
           M    Y    +F  Y+  G   E L           ++        G  ++D+GCG G  
Sbjct: 2   MAQNIYDQPDFFAGYSQLGRSIEGLDGAAE----WPALRAMLPEVGGLRIVDLGCGFGWF 57

Query: 93  SMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151
             +A + GA+ V+G++ S  ++  A+           +T  +  ++  +L       D+ 
Sbjct: 58  CRWAHEHGASYVLGLDLSEKMLARARAAGPDTG----ITYERADLD--KLHLPQDSFDLA 111

Query: 152 IS 153
            S
Sbjct: 112 YS 113

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 5/112 (4%)

Query: 43  YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
            +          E        +     +     L +    LD+G G G  + F  +    
Sbjct: 49  LYKEPVDQDEIREASLRTDEWLASE--LAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV 106

Query: 103 RVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
            +  +  +    +  +E  ++  L+D +T+  G     E+P      D I S
Sbjct: 107 SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL--EIPCEDNSYDFIWS 156

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 58.0 bits (140), Expect = 9e-10
 Identities = 28/163 (17%), Positives = 62/163 (38%), Gaps = 27/163 (16%)

Query: 35  EDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSM 94
            D+ + DYYF     F    E++K  +R         +  +    + VLDIGCG G    
Sbjct: 6   TDIHTSDYYFLFEEKFRGSRELVKARLRR--------YIPYFKGCRRVLDIGCGRGEFLE 57

Query: 95  FAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
              + G    IG++ + +++++ +   +         ++K    E       + +D ++ 
Sbjct: 58  LCKEEG-IESIGVDINEDMIKFCEGKFN---------VVKSDAIEYLKSLPDKYLDGVM- 106

Query: 154 EWMGYCL--FYESMLDTVLYARDKWLATNGLLF---PDKASLF 191
             + + +       L  +L      +  +  +    P+  SL+
Sbjct: 107 --ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLY 147

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 57.6 bits (139), Expect = 9e-10
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 72  HNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVT 130
           +       K VLD G G  +  +        +  GIE S   ++ A+    +NN    + 
Sbjct: 17  YCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK--LN 74

Query: 131 ILKGKVEEVELPFGIQKVDIIISEWMGYCLFYE 163
           I KG +   +LPF  + +  + S    + +   
Sbjct: 75  ISKGDIR--KLPFKDESMSFVYSYGTIFHMRKN 105

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 45  DSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARV 104
           D +            EVR +             K  + +D+GCGTG +++  A     RV
Sbjct: 5   DEFIKNPSVPGPTAMEVRCLIM-----CLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRV 58

Query: 105 IGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152
             I+ +   +   +  + ++ L D VT+++G   E  L   I  +DI +
Sbjct: 59  YAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA-LC-KIPDIDIAV 105

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 71  YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSD-V 128
            +N     G+ V+D G G GIL+  +   GA  V   +   + +E AK      N     
Sbjct: 44  IYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVAD 103

Query: 129 VTILKGKVEEV--ELPFGIQKVDII 151
           V+ + GK +      PFG       
Sbjct: 104 VSEISGKYDTWIMNPPFGSVVKHSD 128

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 27/120 (22%)

Query: 40  RDYYF-DSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK 98
           RD Y+ D Y  F ++                      + K   ++D GCG G L +    
Sbjct: 1   RDLYYNDDYVSFLVNTVW------------------KITKPVHIVDYGCGYGYLGLVLMP 42

Query: 99  --SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155
                ++  GI+    ++  A+E+            L+G     E+     K DI I   
Sbjct: 43  LLPEGSKYTGIDSGETLLAEARELFRLLPYD--SEFLEGDAT--EIELN-DKYDIAICHA 97

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 15/149 (10%)

Query: 37  MTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFA 96
           M     +  S +   IH    +++  T+           +  G  +LD+G G+G +    
Sbjct: 1   MDIPRIFTISESEHRIHNPFTEEKYATLGRVL------RMKPGTRILDLGSGSGEMLCTW 54

Query: 97  AKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155
           A+       GI+ S      AK   ++  +S+ V  +             +K D+     
Sbjct: 55  ARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN---EKCDVAACVG 111

Query: 156 MGYCL-FYESMLDTVLYARDKWLATNGLL 183
             +    +    + +     + L   G++
Sbjct: 112 ATWIAGGFAGAEELL----AQSLKPGGIM 136

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 54.8 bits (132), Expect = 1e-08
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 76  LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG 134
           L +   VLDIG G G   M+  +   A   GI+   NIV  A E   + + ++ +     
Sbjct: 53  LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANE---RVSGNNKIIFEAN 109

Query: 135 KVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARD--KWLATNGLL 183
            +      F     D+I S      +   S+ +     +   KWL   G L
Sbjct: 110 DIL--TKEFPENNFDLIYSRDA---ILALSLENKNKLFQKCYKWLKPTGTL 155

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 14/114 (12%)

Query: 41  DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG 100
             + D+  H          E R      ++       + + VLD+GCG G L    A  G
Sbjct: 22  QAWIDAVRHGA-------IESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRG 74

Query: 101 AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
               +G++    +V+ A+         +V      ++ E ++P G +  D+I +
Sbjct: 75  -IEAVGVDGDRTLVDAARA----AGAGEVHLASYAQLAEAKVPVG-KDYDLICA 122

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 9/147 (6%)

Query: 43  YFDSYAHF--GIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG 100
            +   A +   I+   ++     + +   ++      + + VLD+ CGTGI ++  A+ G
Sbjct: 4   LYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG 63

Query: 101 AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYC 159
              V+G++    ++  A+    + NL   +  L+G V E+       + D +   +    
Sbjct: 64  -YEVVGLDLHEEMLRVARRKAKERNLK--IEFLQGDVLEIAFK---NEFDAVTMFFSTIM 117

Query: 160 LFYESMLDTVLYARDKWLATNGLLFPD 186
            F E  L  +     + L   G+   D
Sbjct: 118 YFDEEDLRKLFSKVAEALKPGGVFITD 144

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 52.7 bits (126), Expect = 7e-08
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 50  FGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILS-MFAAKSGA-ARVIGI 107
            G        + R   +R ++     +  G+ +L+IGCG G LS + A + G+   V GI
Sbjct: 15  LGPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGI 74

Query: 108 ECSNI-------VEYAKEIVDKNNLSDVVTILKGKVE-EVELPFGIQKVDIIISEWMGYC 159
           + ++        +  A   +    L D +T+       +   P   Q  D ++   + + 
Sbjct: 75  DIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVV---LAHS 131

Query: 160 LFY 162
           L+Y
Sbjct: 132 LWY 134

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 51.8 bits (124), Expect = 9e-08
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 78  KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV 136
               VL+ G GTG L+     +G   V GIE S  +   AKE      L    +I +G  
Sbjct: 45  SFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKE-----KLPKEFSITEGDF 98

Query: 137 EEVELPFGIQKVDIIIS 153
              E+P     +D I+S
Sbjct: 99  LSFEVP---TSIDTIVS 112

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 75  HLFKGKIVLDIGCGTGILSMFAAK--SGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTI 131
            L +G  VLD+G G G    + +K      +V  I+    +V YA E V+K  L +V  +
Sbjct: 34  GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVL 93

Query: 132 LKGKVEEVELPFGIQKVDIIIS 153
              +    ++P     VD I  
Sbjct: 94  K-SEEN--KIPLPDNTVDFIFM 112

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 17/178 (9%)

Query: 16  SNSKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHN-- 73
            +S P +     KD+ ++ +    R++Y +S    G      +   +T+  RN   +N  
Sbjct: 2   DSSSPLKT--FRKDQAMEGKKEEIREHY-NSIRERGRES---RQRSKTINIRN--ANNFI 53

Query: 74  ------KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS 126
                  +  +G  VLD+GCG G   +   ++G     G++ +   +  A+         
Sbjct: 54  KACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR 113

Query: 127 DVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
             V           +  G +   I       Y       LD       + L   G   
Sbjct: 114 FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI 171

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 12/119 (10%)

Query: 42  YYFDSYAHFGIHEEMLKDEVRT---MTYRNSMYHN----KHLFKGKIVLDIGCGTGILSM 94
           Y+   Y  F   ++ +K +      +T      H        FK  +V+D  CG G  ++
Sbjct: 35  YWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTI 94

Query: 95  FAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152
             A +G  RVI I+   + +  A+   +   ++D +  + G    +       K D++ 
Sbjct: 95  QFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA---SFLKADVVF 149

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 77  FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK 135
            +GK+V D+G GTG+LS  A   GA  VI +E     V+   E + +        +  G 
Sbjct: 48  IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGD 105

Query: 136 VEEVELPFGIQKVDIIIS 153
           V E          DI+I 
Sbjct: 106 VSEFNSRV-----DIVIM 118

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 30/117 (25%)

Query: 43  YFDSYA-----HFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAA 97
            F+ +       F +H      E++ +         K L      ++IG GTG  ++   
Sbjct: 16  IFERFVNEYERWFLVHRFAYLSELQAV---------KCLLPEGRGVEIGVGTGRFAVP-- 64

Query: 98  KSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
                  IG+E S  + E A++   +      V +LKG  E   LP   +  D  + 
Sbjct: 65  ---LKIKIGVEPSERMAEIARK---RG-----VFVLKGTAE--NLPLKDESFDFALM 108

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 8/104 (7%)

Query: 82  VLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
            L+IGC  G  +   A     R+  I+     +  A +   +      ++     + +  
Sbjct: 55  GLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKR---WSHISWAATDILQFS 110

Query: 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
                +  D+I+   + Y L   + + T +    K LA  G L 
Sbjct: 111 TA---ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLV 151

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 16/152 (10%)

Query: 37  MTSRDYYFDSYAHFGIHEEMLKDEVRTM--TYRNSMYHNKHLFKGKIVLDIGCGTGILSM 94
            T ++   ++ AH   + +  ++        Y  +   +    +G  +LD GCG G +  
Sbjct: 3   TTWKELTDNNPAHSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGG 62

Query: 95  FAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
           + +K G   V+G +    +++YAK+   +         + G +            D+I+S
Sbjct: 63  YLSKQG-HDVLGTDLDPILIDYAKQDFPE------ARWVVGDLS--VDQISETDFDLIVS 113

Query: 154 EWMGYCLFY--ESMLDTVLYARDKWLATNGLL 183
              G  + +  E   +  L    + L  +G  
Sbjct: 114 --AGNVMGFLAEDGREPALANIHRALGADGRA 143

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 34/139 (24%)

Query: 43  YFDSYAH----------FGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGIL 92
           ++D  A           + ++  ++   +            ++L     VLD+G GTG  
Sbjct: 20  FYDRIARAYDSMYETPKWKLYHRLIGSFLE-----------EYLKNPCRVLDLGGGTGKW 68

Query: 93  SMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151
           S+F  + G   V+ ++ S  ++E A+E   K        +++ K E  +LPF     + +
Sbjct: 69  SLFLQERG-FEVVLVDPSKEMLEVARE---KGV----KNVVEAKAE--DLPFPSGAFEAV 118

Query: 152 ISEWMGYCLFYESMLDTVL 170
           ++  +G  L Y    D   
Sbjct: 119 LA--LGDVLSYVENKDKAF 135

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 19/158 (12%)

Query: 35  EDMTSRDYYFDSYAHF--GIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGIL 92
                +  Y    A     +H+   KD  R      +    +H  K   +LD+ CGTG+ 
Sbjct: 6   ATAGPQADYSGEIAELYDLVHQGKGKDYHREAADLAA-LVRRHSPKAASLLDVACGTGMH 64

Query: 93  SMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151
               A S    V G+E S +++  A+             +  G + +  L    ++   +
Sbjct: 65  LRHLADSF-GTVEGLELSADMLAIARRRNPD------AVLHHGDMRDFSLG---RRFSAV 114

Query: 152 ISEWMGYCLFY---ESMLDTVLYARDKWLATNGLLFPD 186
               M   + +   ++ LD  L      +  +G++  +
Sbjct: 115 TC--MFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 12/85 (14%)

Query: 76  LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI----VEYAKEIVDKNNLSDVVTI 131
                 ++D GCG G   + A +   +RV G+    +     ++      +  + D V  
Sbjct: 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGV---TLSAAQADFGNRRARELRIDDHVRS 171

Query: 132 LKGKVEEVELPFGIQKVDIIISEWM 156
               + +     G   V      W 
Sbjct: 172 RVCNMLDTPFDKG--AVTAS---WN 191

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 12/92 (13%)

Query: 56  MLKDEVRTMTYRNSMYHNK-HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIV 113
           + K+E+R ++        K +L K  +V+D+GCG+G +++  AK     V  I+     +
Sbjct: 18  ITKEEIRAVSI------GKLNLNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAI 70

Query: 114 EYAKEIVDKNNLSDVVTILKGKVEEV--ELPF 143
           E  K+ + K N+ +   I+KG+ E+V  +L F
Sbjct: 71  EVTKQNLAKFNIKN-CQIIKGRAEDVLDKLEF 101

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 13/77 (16%)

Query: 78  KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV 136
           K  +++D GCG G    +  +    ++  I+ +   ++  KE         V+T+     
Sbjct: 17  KKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKE-----KFDSVITL----- 65

Query: 137 EEVELPFGIQKVDIIIS 153
                      VD I+ 
Sbjct: 66  -SDPKEIPDNSVDFILF 81

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 15/105 (14%)

Query: 50  FGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIEC 109
              H   L   ++T   R              VLDIG G G  ++  +       IG++ 
Sbjct: 3   HHHHHHSLGLMIKTAECR----------AEHRVLDIGAGAGHTALAFSPYV-QECIGVDA 51

Query: 110 S-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
           +  +VE A     +  + +V     G  E   LPF     DII  
Sbjct: 52  TKEMVEVASSFAQEKGVENVRFQQ-GTAE--SLPFPDDSFDIITC 93

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 50.4 bits (120), Expect = 3e-07
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 79  GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVE 137
              ++D  CG G  + F ++    RVIG++ S + +E A +     N+S  +       +
Sbjct: 57  ELPLIDFACGNGTQTKFLSQFF-PRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQ 115

Query: 138 EVELPFGIQKVDIIIS 153
             ++   I   +I + 
Sbjct: 116 AAQIHSEIGDANIYMR 131

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 12/117 (10%)

Query: 71  YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVV 129
              ++       LD+ CGTG L+             ++ S  ++  A+       L    
Sbjct: 30  KCVENNLVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGLK--P 86

Query: 130 TILKGKVEEVELPFGIQKVDIIISEWMGYCLFY---ESMLDTVLYARDKWLATNGLL 183
            +    +  + +    +K D+I          Y      L     A    L   G+ 
Sbjct: 87  RLACQDISNLNIN---RKFDLITC--CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVF 138

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 19/149 (12%)

Query: 41  DYYFDSYAHF--GIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK 98
             Y   +A      +    KD     +            +   +LD+ CGTG       K
Sbjct: 2   HMYEVDHADVYDLFYLGRGKDYAAEASDIAD-LVRSRTPEASSLLDVACGTGTHLEHFTK 60

Query: 99  SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG 157
                  G+E S +++ +A++ +         T+ +G + +  L    +K   ++S  M 
Sbjct: 61  EF-GDTAGLELSEDMLTHARKRLPD------ATLHQGDMRDFRLG---RKFSAVVS--MF 108

Query: 158 YCLFY---ESMLDTVLYARDKWLATNGLL 183
             + Y      L   + +  + L   G++
Sbjct: 109 SSVGYLKTTEELGAAVASFAEHLEPGGVV 137

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 11/146 (7%)

Query: 41  DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG 100
           D+Y +  A    + ++++D   T   R   +  +       VL++  G G L+      G
Sbjct: 49  DFYDEGAAD--TYRDLIQDADGTSEARE--FATRTGPVSGPVLELAAGMGRLTFPFLDLG 104

Query: 101 AARVIGIECS-NIVEYAKEIVDKNNLS--DVVTILKGKVEEVELPFGIQKVDIIISEWMG 157
              V  +E S +++   ++ + +      D  T+++G +    L    ++   ++     
Sbjct: 105 -WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD---KRFGTVVISSGS 160

Query: 158 YCLFYESMLDTVLYARDKWLATNGLL 183
                E+    +  +  + L   G  
Sbjct: 161 INELDEADRRGLYASVREHLEPGGKF 186

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 17/118 (14%)

Query: 41  DYYFDSYAH----FGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFA 96
           D     + H      IH +   D  + M           L   + VLD+  G G ++   
Sbjct: 4   DKIHHHHHHMYVTSQIHAK-GSDLAKLMQI-------AALKGNEEVLDVATGGGHVANAF 55

Query: 97  AKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
           A     +V+  + + +I++ A+  ++ N    V  +  G  E  ++PF  ++  I+  
Sbjct: 56  APFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ-GDAE--QMPFTDERFHIVTC 109

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 78  KGKIVLDIGCGTGILS-MFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSD----VVTI 131
             + V+D+GCG G L  +    S   ++ G++ S   +E A+E +D+  L       + +
Sbjct: 29  NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQL 88

Query: 132 LKGKVEEVELPFGIQKVDIIISEWM 156
           ++G +   +  F     D      +
Sbjct: 89  IQGALTYQDKRFH--GYDAATVIEV 111

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 11/80 (13%)

Query: 75  HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILK 133
           +L KG ++ DIG GTG  S+  A  G   V  +E S  + + A            V    
Sbjct: 31  NLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHPQ-------VEWFT 82

Query: 134 GKVEEVELPFGIQKVDIIIS 153
           G  E   L    + VD +IS
Sbjct: 83  GYAE--NLALPDKSVDGVIS 100

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 63  TMTYRNSMYHNKHLFK-----GKIVLDIGCGTGILSMFAAK--SGAARVIGIECS-NIVE 114
           ++T +NS+  +    K     G  V+D  CG G  + F A       RV G +     + 
Sbjct: 2   SLTIKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIA 61

Query: 115 YAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
              + +   NL D VT++K   + ++  +    V  ++ 
Sbjct: 62  NTTKKLTDLNLIDRVTLIKDGHQNMD-KYIDCPVKAVMF 99

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 22/149 (14%)

Query: 23  QNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTY-RNSMYHNKHLFKGKI 81
           Q+      +         + +    A        + DEV    Y   S        +G  
Sbjct: 34  QSSADLKTSACKLAAAVPESHRKILAD-------IADEVLEKFYGCGSTLPADGSLEGAT 86

Query: 82  VLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDV-------VTI 131
           VLD+GCGTG     A+K      +VIG++   N +E A++ V+ +            V  
Sbjct: 87  VLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRF 146

Query: 132 LKGKVEEV----ELPFGIQKVDIIISEWM 156
           LKG +E +            VDI+IS  +
Sbjct: 147 LKGFIENLATAEPEGVPDSSVDIVISNCV 175

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 78  KGKIVLDIGCGTGILS-MFAAKSGAARVIGIECS-NIVEYAKEIV---DKNNLSDVVTIL 132
           +   + D+G G G      AA+   A V   E S  + E+A+  +   D    S  + +L
Sbjct: 36  RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVL 95

Query: 133 KGKVEE-----VELPFGIQKVDIIIS 153
           +  V       VE     +    +I 
Sbjct: 96  EADVTLRAKARVEAGLPDEHFHHVIM 121

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 15/106 (14%)

Query: 82  VLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
           +LD+G GTG  +   A  G  ++ G+E +  +VE A++          VT   G +   +
Sbjct: 45  ILDVGSGTGRWTGHLASLG-HQIEGLEPATRLVELARQTHPS------VTFHHGTIT--D 95

Query: 141 LPFGIQKVDIIISEWMGYCLFY--ESMLDTVLYARDKWLATNGLLF 184
           L    ++   +      Y L +     L   L A    +   G L 
Sbjct: 96  LSDSPKRWAGL---LAWYSLIHMGPGELPDALVALRMAVEDGGGLL 138

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 20/127 (15%), Positives = 49/127 (38%), Gaps = 18/127 (14%)

Query: 70  MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIG--IECSNIVEYAKEIVDKNNLSD 127
           +     L  GK V ++G G G++S+ A  +GA +V+        I+   +  + ++  + 
Sbjct: 71  LCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANS 130

Query: 128 VVTILKGK-------------VEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARD 174
             +    +              + ++   G+Q+  +++   +   L +    D +L +  
Sbjct: 131 CSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVL---LADLLSFHQAHDALLRSVK 187

Query: 175 KWLATNG 181
             LA   
Sbjct: 188 MLLALPA 194

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 39  SRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK 98
           S D       +    +   K    T  + + +   K +   K VLD+GCG G  S++ + 
Sbjct: 82  SDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCK-VLDLGCGQGRNSLYLSL 140

Query: 99  SGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG 157
            G   V   + +   + +  E  +K NL+  ++     +    +    +  D I+S  + 
Sbjct: 141 LG-YDVTSWDHNENSIAFLNETKEKENLN--ISTALYDINAANIQ---ENYDFIVSTVVF 194

Query: 158 YCL 160
             L
Sbjct: 195 MFL 197

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 15/129 (11%)

Query: 46  SYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGA-ARV 104
           S A  G   ++ K  VR +               + + DIG G+G +++   +S      
Sbjct: 1   SNATDG---QLTKQHVRALAI-----SALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTA 52

Query: 105 IGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYE 163
           +  E S    E          +SD    ++               D+I    +G  L   
Sbjct: 53  VCFEISEERRERILSNAINLGVSD-RIAVQQGAPRA-FDDVPDNPDVIF---IGGGLTAP 107

Query: 164 SMLDTVLYA 172
            +       
Sbjct: 108 GVFAAAWKR 116

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 74  KHLFKGKIVLDIGCGTGILS-MFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
               +   +LD+G GTG+LS     K   A    ++ S  ++E AK    +   +  V  
Sbjct: 40  SVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKN---RFRGNLKVKY 96

Query: 132 LKGKVEEVELPFGIQKVDIIIS 153
           ++    + +     +K D+++S
Sbjct: 97  IEADYSKYDFE---EKYDMVVS 115

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 46.5 bits (110), Expect = 6e-06
 Identities = 14/85 (16%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 78  KGKIVLDIGCGTGILS-MFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDV----VTI 131
             K V+D+GCG G L  +        ++ G++   +++E AK+ +  + L ++    +++
Sbjct: 29  NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88

Query: 132 LKGKVEEVELPFGIQKVDIIISEWM 156
            +  +            D      +
Sbjct: 89  FQSSLV--YRDKRFSGYDAATVIEV 111

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 16/111 (14%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 75  HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILK 133
           +      +L +  G G  + F A  G   V  ++ S++ +  AK++  +  +   +T ++
Sbjct: 26  NQIPQGKILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKGVK--ITTVQ 82

Query: 134 GKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
             +   +        + I+     +C    S+   +     + L   G+  
Sbjct: 83  SNLA--DFDIVADAWEGIV---SIFCHLPSSLRQQLYPKVYQGLKPGGVFI 128

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 46.6 bits (110), Expect = 6e-06
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 11/121 (9%)

Query: 67  RNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL 125
             +   +         LD G G G ++        A    +E   +++E AK    +   
Sbjct: 82  SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKR---ELAG 138

Query: 126 SDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARD--KWLATNGLL 183
             V   +   +E   LP      D+I+ +W      Y +  D V + +   + L  NG +
Sbjct: 139 MPVGKFILASMETATLPPN--TYDLIVIQW---TAIYLTDADFVKFFKHCQQALTPNGYI 193

Query: 184 F 184
           F
Sbjct: 194 F 194

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 75  HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
           +L  G  +LDIGCG G     A       VIG+  S N   + K + D+ +      + 
Sbjct: 69  NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVR 127

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 75  HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILK 133
            L  G  +LD+GCG G   M A +     V+G+  S N   + +++V  +       +L 
Sbjct: 61  GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLL 120

Query: 134 GKVEEVELPFGIQKVDIIIS 153
              E+ + P      D I+S
Sbjct: 121 AGWEQFDEPV-----DRIVS 135

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score = 46.7 bits (112), Expect = 7e-06
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 82  VLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEEVE 140
           V DIG G+G + +  AK   A V   + S+  VE A++  +++ +SD   + KG+  E  
Sbjct: 127 VADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-P 185

Query: 141 LPFGIQKVDIIIS 153
                  +++I+S
Sbjct: 186 FKEKFASIEMILS 198

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 46.1 bits (109), Expect = 7e-06
 Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 15/106 (14%)

Query: 82  VLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
           VL++  GTG  +   +     RV  ++ S  ++  A       +  D V   +  +   +
Sbjct: 50  VLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGR-----HGLDNVEFRQQDLF--D 101

Query: 141 LPFGIQKVDIIISEWMGYCLFY--ESMLDTVLYARDKWLATNGLLF 184
                ++ D +   +  + L +  +   +    +    +A  G++ 
Sbjct: 102 WTPD-RQWDAV---FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVE 143

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 47.0 bits (111), Expect = 8e-06
 Identities = 21/103 (20%), Positives = 47/103 (45%), Gaps = 12/103 (11%)

Query: 75  HLFKGKIVLDIGCGTGILSMFAAKSGA--ARVIGIECS-NIVEYAKEIVDKNNLS-DVVT 130
           H  + K+++D+GCG G  ++  A+      ++IG + S  +++ A+ I + +  +   V+
Sbjct: 33  HDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVS 92

Query: 131 ILKGKVEEVEL----PFGIQKVDIIIS----EWMGYCLFYESM 165
                 ++ +         QK+D+I +     W  +  F  S 
Sbjct: 93  FKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSA 135

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 46.2 bits (109), Expect = 9e-06
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 10/74 (13%)

Query: 82  VLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
           VL+ GCG G  +        AR    + S  +++ A+      N               E
Sbjct: 52  VLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARA-----NAPHADVYEWNGKG--E 103

Query: 141 LPFGI-QKVDIIIS 153
           LP G+     +I+S
Sbjct: 104 LPAGLGAPFGLIVS 117

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 46.5 bits (110), Expect = 9e-06
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 27  SKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIG 86
           ++   V  E +   D Y D  A       +     RT  Y+  +           VLD+ 
Sbjct: 8   TRSLGVAAEGI--PDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVA 65

Query: 87  CGTGILSMFAAKSGAARVIGIECS-NIVEYAKE 118
           CGTG+ S+   + G   V  ++ S  +++YA +
Sbjct: 66  CGTGVDSIMLVEEG-FSVTSVDASDKMLKYALK 97

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318

 Score = 46.8 bits (112), Expect = 9e-06
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 75  HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
            L  G  +LDIGCG G     A +     VIG+  S N     ++++   + +    +L
Sbjct: 87  DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVL 145

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 11/77 (14%)

Query: 78  KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV 136
            G+ +LD+GCGTG L+   A+SG A V+G + +  ++E A++     N    +       
Sbjct: 57  PGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQ-----NYPH-LHFDVADA 109

Query: 137 EEVELPFGIQKVDIIIS 153
                    + +D + S
Sbjct: 110 R--NFRVD-KPLDAVFS 123

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 13/114 (11%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
           + +  GK + DIGCGTG  ++  A      V G++ S  ++E A+E   + N    V   
Sbjct: 29  EQVEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRH--VDFW 84

Query: 133 KGKVEEVELPFGIQKVDIIISEWMGYCLFY---ESMLDTVLYARDKWLATNGLL 183
              + E+ELP   + VD I    +   L Y   E+ +     +  + L   G L
Sbjct: 85  VQDMRELELP---EPVDAITI--LCDSLNYLQTEADVKQTFDSAARLLTDGGKL 133

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 79  GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVE 137
             + L++G GTG +++     G  R I ++    ++E  ++ +   +    V +++    
Sbjct: 40  EPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRK--VQVVQADAR 96

Query: 138 EVELPFGIQKVDIIIS 153
              +P   + V  +I 
Sbjct: 97  --AIPLPDESVHGVIV 110

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Length = 425

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 14/81 (17%)

Query: 76  LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEY----AKEIVDKNNLSDVVTI 131
           L +G+ +LD+  G G   ++ AK     V G +     E+    A+  V+ NN+ D    
Sbjct: 288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFD---SNEFAIEMARRNVEINNV-DAEFE 342

Query: 132 LKGKVEEVELPFGIQKVDIII 152
           +    E       ++  D +I
Sbjct: 343 VASDREVS-----VKGFDTVI 358

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 13/112 (11%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
             L  G  +L++GCG G  +     +G   V   + S  +   A   + +   + +    
Sbjct: 39  GELPAGAKILELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASRRLGRPVRTMLFH-- 95

Query: 133 KGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
                  +L       D + +      +  +  L  VL    + L   GL +
Sbjct: 96  -------QLDAI-DAYDAVWAHACLLHVPRDE-LADVLKLIWRALKPGGLFY 138

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 6/82 (7%)

Query: 73  NKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTI 131
              L     +L +GCG   LS      G   V  ++  S +V   +           +  
Sbjct: 37  EPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQA---CYAHVPQLRW 93

Query: 132 LKGKVEEVELPFGIQKVDIIIS 153
               V   +L F     D+++ 
Sbjct: 94  ETMDVR--KLDFPSASFDVVLE 113

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 78  KGKIVLDIGCGTG--ILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKG 134
            G++ L+IG G    +  M A K    +V   E      EYA+  +++NN +  +    G
Sbjct: 55  GGEVALEIGTGHTAMMALM-AEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNG 113

Query: 135 KVEEVELPFGIQKVDIIIS 153
            + +          D+I S
Sbjct: 114 GIIK---GVVEGTFDVIFS 129

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 26/140 (18%)

Query: 63  TMTYRNSMYHNK---------------HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGI 107
            M  R+  Y                   + K    LD+GCG G  S++ A +G   V   
Sbjct: 2   AMVIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-YDVDAW 60

Query: 108 ECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY--ES 164
           + +   +   + I    NL ++ T +   +  +      ++ D I+S      L +    
Sbjct: 61  DKNAMSIANVERIKSIENLDNLHTRV-VDLNNLTFD---RQYDFILS---TVVLMFLEAK 113

Query: 165 MLDTVLYARDKWLATNGLLF 184
            +  ++    +     G   
Sbjct: 114 TIPGLIANMQRCTKPGGYNL 133

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
            +L +   +LDIGCG+G +S+  A  G   V GI+ +   +  A+       L+      
Sbjct: 26  NYLQEDDEILDIGCGSGKISLELASKG-YSVTGIDINSEAIRLAETAARSPGLNQ---KT 81

Query: 133 KGKVEEV-----ELPFGIQKVDIII 152
            GK E        L F     D  +
Sbjct: 82  GGKAEFKVENASSLSFHDSSFDFAV 106

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 78  KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDV-VTILKGK 135
           K   +LD+GCG G++ +  A          + +   ++ AKE +  NNL +  + ++   
Sbjct: 52  KDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD 110

Query: 136 VEEVELPFGIQKVDIIIS 153
           + E       +K + II+
Sbjct: 111 LYENVKD---RKYNKIIT 125

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 18/104 (17%)

Query: 50  FGIHEE-------MLKDEVRTMTYRNSMYHNK-HLFKGKIVLDIGCGTGILSMFAAKSGA 101
            G  E        + K  +R +T             +G+++ DIG G+G +S+    +G 
Sbjct: 25  PGRPESAFAHDGQITKSPMRALTL------AALAPRRGELLWDIGGGSGSVSVEWCLAG- 77

Query: 102 ARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEEV--ELP 142
            R I IE     +E  ++ +D   LS  +  ++G       +LP
Sbjct: 78  GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP 121

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 70  MYHNKHLFKGKIVLDIGCGT-GILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSD 127
                   +G+  + IG G   +  +  +     RV  +E   +I E ++++++   +  
Sbjct: 114 EAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDG 173

Query: 128 V 128
           V
Sbjct: 174 V 174

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTIL 132
           K +  G  VLD+   TG  ++ AA +GA  VIGI+ S   +E AKE    N + D +  +
Sbjct: 213 KWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFI 272

Query: 133 KGKVEEV--ELPFGIQKVDIII 152
            G   E   +L    +K DI++
Sbjct: 273 VGSAFEEMEKLQKKGEKFDIVV 294

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 78  KGKIVLDIGCGTGILSMFAAKSGA--ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG 134
               ++D GCG+G L             +IG++ S   +  A +++      +   +   
Sbjct: 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA 780

Query: 135 KVEE---VELPFGIQKVDIIISEWM 156
            + +   +E    +  VDI     +
Sbjct: 781 TLYDGSILEFDSRLHDVDIGTCLEV 805

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 78  KGKIVLDIGCGTGILS-MFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK 135
           +     D+GCG G  + +   + G   + GI+   +++E A +      L +     K  
Sbjct: 33  RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAAD-----RLPN-TNFGKAD 86

Query: 136 VEEVELPFGIQKVDIIIS 153
           +         QK D++ +
Sbjct: 87  LA--TWKPA-QKADLLYA 101

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254

 Score = 43.6 bits (102), Expect = 6e-05
 Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 12/135 (8%)

Query: 70  MYHNKHLFKGKIVLDIGCGTG-ILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSD 127
            + +      +  +DIG G   I  +  A       +  E  ++   YAK+ V++NNLSD
Sbjct: 57  GHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSD 116

Query: 128 VVTILKGKVEEVELP----FGIQKVDIIISEWMGYCLFYESMLD--TVLYARDKWLATNG 181
           ++ ++K   + + +           D  +        F+ + L+   V     +    + 
Sbjct: 117 LIKVVKVPQKTLLMDALKEESEIIYDFCMC----NPPFFANQLEAKGVNSRNPRRPPPSS 172

Query: 182 LLFPDKASLFICGIE 196
           +       +   G E
Sbjct: 173 VNTGGITEIMAEGGE 187

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 43.5 bits (102), Expect = 7e-05
 Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 13/149 (8%)

Query: 39  SRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK 98
           + D     Y H  I    +         +  +    +       LD G G G ++     
Sbjct: 44  TVDGMLGGYGH--ISSIDINS--SRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLL 99

Query: 99  SGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG 157
                V  ++   + +  AK  + +     V       ++  +        D+I  +W  
Sbjct: 100 PLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQ--DFTPEPDSYDVIWIQW-- 154

Query: 158 YCLFYESMLDTVLYARD--KWLATNGLLF 184
             + + +      + R     L  NG++ 
Sbjct: 155 -VIGHLTDQHLAEFLRRCKGSLRPNGIIV 182

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236

 Score = 43.3 bits (101), Expect = 7e-05
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 9/138 (6%)

Query: 18  SKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEE--MLKDEVRTMTYRNSMYHNKH 75
           S PS     +  EN       +   Y  +  H  I  +  M + E   M    +   +K 
Sbjct: 2   SAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK- 60

Query: 76  LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG 134
              G  VL++G G  I +    ++       IEC+  + +  ++   +      V  LKG
Sbjct: 61  ---GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKG 115

Query: 135 KVEEVELPFGIQKVDIII 152
             E+V         D I+
Sbjct: 116 LWEDVAPTLPDGHFDGIL 133

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 10/136 (7%)

Query: 54  EEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NI 112
             M+K   R +   +       L    IV+D   G G  + F A   + +V   +     
Sbjct: 2   NAMIK---RPIHMSHDFLAE-VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQA 56

Query: 113 VEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESML-DTVLY 171
           +    + +    + +   IL G            +  I    ++            T L 
Sbjct: 57  LGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLE 116

Query: 172 ARDK---WLATNGLLF 184
           A +K    L   G L 
Sbjct: 117 AIEKILDRLEVGGRLA 132

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLS-DVVTI 131
           +   + K VL+    TG  ++ A   G ++V+ ++ S   ++ A++ V+ N L       
Sbjct: 216 RRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEF 275

Query: 132 LKGKVEEV--ELPFGIQKVDIII 152
           ++  V ++        +K D+I+
Sbjct: 276 VRDDVFKLLRTYRDRGEKFDVIV 298

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 15/116 (12%)

Query: 49  HFGIHEEMLKDEVRTMTYRNSMYHNKH---------LFKGKIVLDIGCGTGILSMFAAKS 99
            F I    + D +  M     + H K          +  G  +++ G G+G L++F A  
Sbjct: 55  EFKILRPRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANI 114

Query: 100 GAA--RVIGIEC-SNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152
                RV+  E   +  + A E +      D VTI   K++++      + VD +I
Sbjct: 115 VGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTI---KLKDIYEGIEEENVDHVI 167

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 6/115 (5%)

Query: 71  YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVV 129
             +         L  GCG G   +  A      V+G++ S   +  A E    +  ++  
Sbjct: 59  LVDTSSLPLGRALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSSPKAEYF 117

Query: 130 TILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
           + +K  V         +  D+I  +++ +C     M      +  + L  +G L 
Sbjct: 118 SFVKEDVFTWRPT---ELFDLIF-DYVFFCAIEPEMRPAWAKSMYELLKPDGELI 168

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 71  YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKN-----NL 125
           Y ++ + +G  V+D+  G GI  +       ++ I IE     +        N     N 
Sbjct: 86  YKSRFIREGTKVVDLTGGLGIDFIALMSKA-SQGIYIE---RNDETAVAARHNIPLLLNE 141

Query: 126 SDVVTILKGKVEEVELPFGIQKVDIIISEWM 156
              V IL G  +E          D I  +  
Sbjct: 142 GKDVNILTGDFKEYLPLIKTFHPDYIYVDPA 172

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 78  KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV 136
               VLD+ CG G  ++  A   AA V+G+E    +VE  ++    N L + VT     +
Sbjct: 286 PEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENL 343

Query: 137 EEV--ELPFGIQKVDIII 152
           EE   + P+     D ++
Sbjct: 344 EEDVTKQPWAKNGFDKVL 361

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
           K +    +V+D+  G G  S+      A ++  I+ + + +E  K+ +  N L   +  +
Sbjct: 191 KKVSLNDVVVDMFAGVGPFSIACKN--AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPI 248

Query: 133 KGKVEEVE 140
              V EV+
Sbjct: 249 LSDVREVD 256

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 82  VLDIGCGTGILSMFAAK-SGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEEV 139
           VLD+GCG G+LS+  A+ S   R+   + S   VE ++  +  N +   V        EV
Sbjct: 200 VLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNV-FSEV 258

Query: 140 ELPFGIQKVDIIIS 153
           +  F     D+IIS
Sbjct: 259 KGRF-----DMIIS 267

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 34/161 (21%), Positives = 52/161 (32%), Gaps = 21/161 (13%)

Query: 41  DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKI---VLDIGCGTG-----IL 92
             Y +S+  F  H       ++    +        +   K    +L IG G G     IL
Sbjct: 13  GKYVESFRRFLNHSTE-HQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQIL 71

Query: 93  SMFAAK--SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTI--LKGKVEEVE----LPF 143
           S   A+          +E S   +   KE+V K +  + V     K    E +       
Sbjct: 72  SKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131

Query: 144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
            +QK D I    M   L+Y   +   L      L TN  + 
Sbjct: 132 ELQKWDFIH---MIQMLYYVKDIPATLKFFHSLLGTNAKML 169

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLS-DVVTI 131
                GK VL++   T   S+ AA  GA     ++ +      +    + N+L      +
Sbjct: 208 NGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQL 267

Query: 132 LKGKV 136
           +   V
Sbjct: 268 VVMDV 272

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 75  HLFKGKIVLDIGCGTG----ILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVV 129
            L  G  VL+IG G G    + +    + G   V+ IE    + E A+  + K    +V+
Sbjct: 74  DLKPGMKVLEIGTGCGYHAAVTAEIVGEDG--LVVSIERIPELAEKAERTLRKLGYDNVI 131

Query: 130 TIL 132
            I+
Sbjct: 132 VIV 134

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 75  HLFKGKIVLDIGCGTG----ILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLS 126
            L +G   LD+G G+G      +     +G  +VIGI+    +V+ +   V K++ +
Sbjct: 74  QLHEGAKALDVGSGSGILTACFARMVGCTG--KVIGIDHIKELVDDSVNNVRKDDPT 128

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 8/60 (13%)

Query: 75  HLFKGKIVLDIGCGTG----ILSMFAAKSGA---ARVIGIEC-SNIVEYAKEIVDKNNLS 126
           HL  G  +LD+G G+G        +    G     R++GIE  + +V  +K  ++ ++ S
Sbjct: 81  HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS 140

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 78  KGKIVLDIGCGTG-ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK 135
            G  VLD  CG+G IL   A +  +  +IGIE     +  A+       + D +  ++G 
Sbjct: 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGD 276

Query: 136 VEEVELPFGIQKVDIIIS 153
             ++        VD  IS
Sbjct: 277 ATQLSQYVD--SVDFAIS 292

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 10/100 (10%)

Query: 63  TMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK-SGAARVIGIE---------CSNI 112
           +      M     +    + +D+G G G + +  A  +      G+E          +  
Sbjct: 158 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMD 217

Query: 113 VEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152
            E+ K +          T+ +G     E    I    +I 
Sbjct: 218 REFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIF 257

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 40.2 bits (93), Expect = 9e-04
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 9/73 (12%)

Query: 78  KGKIVLDIGCGTG--ILSMFAAKSGAARVIGIECS-----NIVEYAKEIVDKNNLSDVVT 130
             ++ +D+G G G  I  + A        IGI+       +I +   +   K  LS+VV 
Sbjct: 24  FDRVHIDLGTGDGRNIYKL-AINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVV- 81

Query: 131 ILKGKVEEVELPF 143
            +    E +    
Sbjct: 82  FVIAAAESLPFEL 94

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 40.4 bits (94), Expect = 9e-04
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 76  LFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTIL 132
           + +G  ++D G G+G +    A++   + +V   E      + A+  + K  L + VTI 
Sbjct: 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIK 169

Query: 133 KGKVEE 138
              + E
Sbjct: 170 VRDISE 175

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 40.7 bits (95), Expect = 9e-04
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 78  KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKV 136
           +G+ VLD+G G G L++  A+ G A V+G+E     V   ++ ++ N L     +     
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEANAL-KAQALHSDVD 290

Query: 137 EEVELPFGIQKVDIIIS 153
           E +       + DII++
Sbjct: 291 EALTEE---ARFDIIVT 304

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	519
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	100.0
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	100.0
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	100.0
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	100.0
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	100.0
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	100.0
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	100.0
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	100.0
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	100.0
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.92
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.91
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.89
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.85
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.84
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.79
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.74
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.59
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.58
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.58
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.55
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.55
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.55
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.54
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.54
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.54
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.54
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.53
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.53
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.53
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.53
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.51
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.51
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	99.51
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.51
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.51
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.51
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.5
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.5
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.5
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.5
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.49
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.49
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.49
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.48
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.48
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.48
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.48
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.48
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.47
3ocj_A	305	Putative exported protein; structural genomics, PS	99.47
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.47
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.47
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.47
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.47
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.47
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.46
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.46
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	99.46
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.46
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.46
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.46
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.46
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.45
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.45
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.45
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.45
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.45
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.45
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.45
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.44
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.43
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.43
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.43
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.43
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.43
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.43
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.43
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.43
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.43
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.42
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.42
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.42
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.41
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.41
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.41
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.41
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.41
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.41
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.41
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.4
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.4
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.4
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.4
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.4
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.39
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.39
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.39
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.39
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.39
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.39
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.39
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.38
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.38
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.38
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.38
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.38
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.38
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.38
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.38
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.38
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.38
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.38
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.37
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.37
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.36
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.36
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.36
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.36
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.35
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.35
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.35
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.35
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.35
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.35
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.34
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.34
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.34
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.34
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.34
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.34
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.33
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.33
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.33
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.33
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.32
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.32
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.32
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.32
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.32
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.32
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.31
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.31
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.31
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.31
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.3
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.3
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.3
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.3
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.3
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.29
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.29
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.29
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.29
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.29
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.28
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.28
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.28
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.27
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.27
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.27
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.27
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.27
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.27
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.26
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.26
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.26
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.25
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.25
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.25
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.25
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.25
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.25
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.25
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.24
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.24
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.24
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.24
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.23
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.23
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.23
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.23
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.23
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.23
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.23
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.23
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.23
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.22
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.22
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.22
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.21
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.21
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.21
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.2
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.2
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.2
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.2
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.2
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.2
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.2
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.2
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.2
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.2
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.19
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.19
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.19
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.19
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.18
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.18
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.18
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.17
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.17
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.16
2o07_A	304	Spermidine synthase; structural genomics, structur	99.16
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.15
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.15
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.15
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.15
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.14
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.14
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.13
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.13
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.13
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.12
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.12
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.12
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.12
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.12
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.12
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.1
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.08
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.08
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.08
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.06
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.06
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.06
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.05
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.05
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.04
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.04
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.04
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.04
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.03
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.03
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.03
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.01
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.01
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.01
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.0
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.0
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.98
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.98
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.97
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.95
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.94
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.93
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.93
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.91
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.91
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.91
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.91
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.9
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.9
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.88
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.85
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.83
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.83
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.82
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.82
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.8
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.78
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.76
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.76
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.75
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.74
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.71
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.69
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.68
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.68
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.65
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.61
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.58
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.51
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.48
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.36
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.36
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.3
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.24
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.17
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.17
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.16
3lkd_A	542	Type I restriction-modification system methyltrans	98.13
3khk_A	544	Type I restriction-modification system methylation	98.11
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.1
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.02
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.99
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.98
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.84
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.83
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.82
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.74
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.6
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.58
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.48
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.47
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.39
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.36
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.75
3ufb_A	530	Type I restriction-modification system methyltran	96.72
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.56
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.48
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.1
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.08
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.82
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	95.63
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.55
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.14
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.13
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	94.81
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	94.8
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	94.73
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.28
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.04
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.89
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	93.79
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	93.69
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.51
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	93.41
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	93.35
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	93.14
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	93.09
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	93.07
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	93.04
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	92.98
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	92.77
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	92.64
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	92.44
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	92.44
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	92.08
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	91.98
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	91.95
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	91.57
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	91.14
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	90.93
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	90.88
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	90.87
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.8
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	90.78
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	90.77
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	90.44
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	90.07
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	89.93
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	89.64
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	89.48
4eye_A	342	Probable oxidoreductase; structural genomics, niai	89.2
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	89.03
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	89.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	88.99
2zig_A	297	TTHA0409, putative modification methylase; methylt	88.72
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	88.71
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	88.43
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	88.4
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	88.18
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	87.98
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	87.85
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	87.02
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	86.94
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	86.72
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	86.69
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	86.46
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	86.16
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	85.88
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	85.83
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	85.54
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	85.51
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	85.51
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	84.81
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	84.63
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	84.61
3me5_A	482	Cytosine-specific methyltransferase; structural ge	84.34
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	84.07
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	83.91
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	83.25
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	82.76
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	82.46
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	82.28
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	82.01
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	81.78
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	81.33
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	81.1
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	81.05
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	80.55
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	80.43
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	80.37

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=100.00  E-value=9.1e-65  Score=520.37  Aligned_cols=322  Identities=37%  Similarity=0.644  Sum_probs=287.4

Q ss_pred             cCCCcchhhhccccccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHH
Q psy14674         36 DMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEY  115 (519)
Q Consensus        36 ~~~~~~~yf~~y~~~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~  115 (519)
                      ..++..+||++|+++++|..||+|..|+.+|++||..+....+|++|||||||+|++++++|++|+++|+|||.|+|++.
T Consensus        41 ~~~~d~~Yf~sY~~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~  120 (376)
T 4hc4_A           41 KRERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQ  120 (376)
T ss_dssp             --------CCCHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHH
T ss_pred             cccchhhhhhhccCcHHHHHHhCCHHHHHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHH
Confidence            33556689999999999999999999999999999988778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccccc
Q psy14674        116 AKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGI  195 (519)
Q Consensus       116 A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i  195 (519)
                      |+++++.||+.++|++++++++++.+|   +++|+|||+++++++.+|.+++.++.++.|+|||||.++|+.++      
T Consensus       121 a~~~~~~n~~~~~i~~i~~~~~~~~lp---e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~at------  191 (376)
T 4hc4_A          121 AREVVRFNGLEDRVHVLPGPVETVELP---EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAE------  191 (376)
T ss_dssp             HHHHHHHTTCTTTEEEEESCTTTCCCS---SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEE------
T ss_pred             HHHHHHHcCCCceEEEEeeeeeeecCC---ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccce------
Confidence            999999999999999999999999888   79999999999999999999999999999999999999999999      


Q ss_pred             ccccCCCcccccceeEEecCCCcceeeecccCccccccceeeeecc---cccChhhhhhhhh------cCCcccccCCCC
Q psy14674        196 EDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNV---YGFDMSCIKKIAI------KEPLVDVVDPKQ  266 (519)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~---~G~d~~~~~~~~~------~~~~v~~~~~~~  266 (519)
                                              +|++++++..+ ..++.+|.++   |||||+++...+.      .+|.++.+++.+
T Consensus       192 ------------------------ly~apie~~~l-~~~i~~w~~v~~~yGfd~s~~~~~~~~~~~~~~e~~v~~~~~~~  246 (376)
T 4hc4_A          192 ------------------------LFIVPISDQML-EWRLGFWSQVKQHYGVDMSCLEGFATRCLMGHSEIVVQGLSGED  246 (376)
T ss_dssp             ------------------------EEEEEECCHHH-HHHHHGGGGHHHHHSCCCGGGHHHHHHHHHSSCEEEEECCCGGG
T ss_pred             ------------------------EEEEEeccchh-hhhhcchhccccccCcCchhhhhhhhhhhcccCceEEEeecccc
Confidence                                    77777776433 4567889876   9999999987654      468889999999


Q ss_pred             cccCCceEEEEecCCCCCCC---ceeeeeEEEEEEecceeeEEEEEEEEEEcC--CCCceEEecCCCCCCCCeeeEEEee
Q psy14674        267 VVTSSCLLKEIDLYTITKAD---LSFTSPFTLQVRRNDYVQALVTFFSVEFSK--CHKRIGFSTAPEAHYTHWKQTVFYL  341 (519)
Q Consensus       267 ~ls~~~~~~~~dl~~~~~~~---~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~--~~~~v~lsT~P~~~~thW~q~v~~l  341 (519)
                      +|++|+.+++|||.++..++   ..+..+|++++.++|.+|||++|||+.|++  ++.++.|||+|..+.|||+|++|+|
T Consensus       247 ~Ls~p~~i~~~D~~~~~~~~~~~~~~~~~f~~~~~~~g~vhg~~~WFd~~f~~~~~~~~v~lST~P~~~~THW~Q~v~~L  326 (376)
T 4hc4_A          247 VLARPQRFAQLELSRAGLEQELEAGVGGRFRCSCYGSAPMHGFAIWFQVTFPGGESEKPLVLSTSPFHPATHWKQALLYL  326 (376)
T ss_dssp             BCSCCEEEEEEETTCTTHHHHHHHCEEEEEEEECCSSEEEEEEEEEEEEEECCCC--CCEEEECCTTSCCCTTCEEEEEE
T ss_pred             cccCCEEEEEEECCCCCccccccccceeEEEEEecCCcEEEEEEEEEEEEecCCCCCCceEEeCCCCcCCCceeeEEEEe
Confidence            99999999999999987653   467888999999999999999999999975  3467999999999999999999999


Q ss_pred             CceeeecCCCEEEEEEEEEeCCCCCcceEEEEEEEecCceeeeccceeEEecc
Q psy14674        342 NEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQVDD  394 (519)
Q Consensus       342 ~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (519)
                      ++|+.|++||+|+|+++|++|++|+|+++|+|+|.+.++..   .++.|.|.+
T Consensus       327 ~~Pi~V~~G~~I~g~i~~~~~~~n~R~~~i~i~~~~~~~~~---~~~~~~~~~  376 (376)
T 4hc4_A          327 NEPVQVEQDTDVSGEITLLPSRDNPRRLRVLLRYKVGDQEE---KTKDFAMED  376 (376)
T ss_dssp             EEEEEECTTCEEEEEEEEEECSSCTTSEEEEEEEEETTSCC---EEEEEEECC
T ss_pred             CCceEeCCCCEEEEEEEEEECCCCCceeEEEEEEEeCCCCc---ceEEEeCCC
Confidence            99999999999999999999999999999999999988653   457898864

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=100.00  E-value=6e-59  Score=477.52  Aligned_cols=331  Identities=72%  Similarity=1.268  Sum_probs=297.8

Q ss_pred             ccccccCCCcchhhhccccccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech
Q psy14674         31 NVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS  110 (519)
Q Consensus        31 ~~~~~~~~~~~~yf~~y~~~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s  110 (519)
                      ...++.+.+.++||++|+++..+..|++|..|+..|.++|..+..+.++++|||||||+|.+++.++++|+++|+|+|+|
T Consensus        19 ~~~~~~~~~~~~yf~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s   98 (349)
T 3q7e_A           19 KPNAEDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS   98 (349)
T ss_dssp             ------------------CCHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS
T ss_pred             CCCccccchHHHHHHhhhhhHHHHHHhccHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH
Confidence            34567788889999999999999999999999999999998776778899999999999999999999998899999999


Q ss_pred             HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcc
Q psy14674        111 NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASL  190 (519)
Q Consensus       111 ~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~  190 (519)
                      +|++.|+++++.+++.++++++++|+++++++.  ++||+|+++++++++.++..+..++.++.++|||||+++|+.++ 
T Consensus        99 ~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~-  175 (349)
T 3q7e_A           99 SISDYAVKIVKANKLDHVVTIIKGKVEEVELPV--EKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRAT-  175 (349)
T ss_dssp             THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS--SCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEE-
T ss_pred             HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCC--CceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccce-
Confidence            999999999999999999999999999987775  89999999999999988999999999999999999999999988 


Q ss_pred             cccccccccCCCcccccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhhhhhhcCCcccccCCCCcccC
Q psy14674        191 FICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTS  270 (519)
Q Consensus       191 ~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~~~v~~~~~~~~ls~  270 (519)
                                                   .++.++++..+....+.+|.++||||++++++.+..+|+++.+++.+++++
T Consensus       176 -----------------------------~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~p~v~~~~~~~~~~~  226 (349)
T 3q7e_A          176 -----------------------------LYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTN  226 (349)
T ss_dssp             -----------------------------EEEEEECCHHHHHHHTGGGGCBTTBCCGGGHHHHHTSCEEECCCGGGEEEE
T ss_pred             -----------------------------EEEeeecChhhhhhhhcccccccCcchHHHhHhhhcCcEEEEEChhhEecc
Confidence                                         777788887777778899999999999999999999999999999999999


Q ss_pred             CceEEEEecCCCCCCCceeeeeEEEEEEecceeeEEEEEEEEEEcCCCCceEEecCCCCCCCCeeeEEEeeCceeeecCC
Q psy14674        271 SCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKG  350 (519)
Q Consensus       271 ~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~~~v~lsT~P~~~~thW~q~v~~l~~p~~v~~g  350 (519)
                      ++.++++|+.+++.+++.+..+|++++.++|.+|||++|||++|+++++++.|||+|..+.|||+|++|+|++|+.|++|
T Consensus       227 ~~~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~Fd~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g  306 (349)
T 3q7e_A          227 ACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTG  306 (349)
T ss_dssp             EEEEEEEETTTCCGGGGSEEEEEEEEBCSSEEEEEEEEEEEEECTTSSSCCEEECSTTSCCCTTCEEEEEEEEEEEECTT
T ss_pred             cEEEEEEEcccCchhhcceeeeEEEEEccCCEEEEEEEEEEEEecCCCCccEEECCCCcCCCcceeEEEEECCceEeCCC
Confidence            99999999999999999999999999999999999999999999987779999999999999999999999999999999


Q ss_pred             CEEEEEEEEEeCCCCCcceEEEEEEEecCceeeeccceeEEec
Q psy14674        351 EEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQVD  393 (519)
Q Consensus       351 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (519)
                      ++|+|++++++|++|+|+++|+|+|+++|+.++++.++.|+|+
T Consensus       307 ~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (349)
T 3q7e_A          307 EEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR  349 (349)
T ss_dssp             CEEEEEEEEEECSSCSSCEEEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CEEEEEEEEEECCCCCeeEEEEEEEEeCCcccccccCceEecC
Confidence            9999999999999999999999999999999999889999985

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=100.00  E-value=2e-56  Score=455.12  Aligned_cols=321  Identities=52%  Similarity=0.949  Sum_probs=298.5

Q ss_pred             chhhhccccccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHH
Q psy14674         41 DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIV  120 (519)
Q Consensus        41 ~~yf~~y~~~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~  120 (519)
                      ++||++|+++++|..|++|..|+..|.++|.......++++|||||||+|.+++.++++|+.+|+|+|+|+|++.|++++
T Consensus         1 d~Yf~~y~~~~~~~~ml~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~   80 (328)
T 1g6q_1            1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELV   80 (328)
T ss_dssp             CCCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHH
T ss_pred             CchhhhhcCchHHHHHhcCHHHHHHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHH
Confidence            36999999999999999999999999999987666778999999999999999999999888999999999999999999


Q ss_pred             HHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccccccccC
Q psy14674        121 DKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQG  200 (519)
Q Consensus       121 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~~~  200 (519)
                      +.+++.++++++++|+++++++.  ++||+|+++++++++.++..+..++.++.++|||||.++|+.++           
T Consensus        81 ~~~~~~~~i~~~~~d~~~~~~~~--~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~~~~-----------  147 (328)
T 1g6q_1           81 ELNGFSDKITLLRGKLEDVHLPF--PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCS-----------  147 (328)
T ss_dssp             HHTTCTTTEEEEESCTTTSCCSS--SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEE-----------
T ss_pred             HHcCCCCCEEEEECchhhccCCC--CcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEeece-----------
Confidence            99999989999999999877665  78999999999888888888999999999999999999999988           


Q ss_pred             CCcccccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhhhhhhcCCcccccCCCCcccCCceEEEEecC
Q psy14674        201 GQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLY  280 (519)
Q Consensus       201 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~~~v~~~~~~~~ls~~~~~~~~dl~  280 (519)
                                         ++++++++..+....+.+|.+++||+++.+.+.+..+|.++.+++.+++++|+.++++||.
T Consensus       148 -------------------~~~~~~~~~~~~~~~~~~w~~~~gf~~~~~~~~~~~~~~v~~~~~~~~ls~~~~~~~~d~~  208 (328)
T 1g6q_1          148 -------------------IHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLN  208 (328)
T ss_dssp             -------------------EEEEEECCHHHHHHHHHHTTCBTTBCCTTHHHHHTTSCEEECCCGGGBCBCCEEEEEEETT
T ss_pred             -------------------EEEEEecCchhhhhhhcccccccCcChHHHhhhhhcCCeEEEeccceeecCCEEEEEEECC
Confidence                               6777777776666677899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeeeeEEEEEEecceeeEEEEEEEEEEcC--CCCceEEecCCCCCCCCeeeEEEeeCceeeecCCCEEEEEEE
Q psy14674        281 TITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSK--CHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFG  358 (519)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~--~~~~v~lsT~P~~~~thW~q~v~~l~~p~~v~~g~~i~~~~~  358 (519)
                      ++..+++.+..++++++.++|.+|||++|||++|++  +++++.+||+|..+.|||+|++|+|++|+.|++|+.|+|+++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~wfd~~~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~  288 (328)
T 1g6q_1          209 TVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELV  288 (328)
T ss_dssp             TCCGGGGSEEEEEEEEBCSSCEEEEEEEEEEEECCCCTTSCCCEEECSTTSCCCTTCEEEEEEEEEEECCTTCEEEEEEE
T ss_pred             CCChhHhceeeeEEEEEecCcEEEEEEEEEEEEcCCCCCCCceEEECCCCcCCCcceeEEEEeCCceecCCCCEEEEEEE
Confidence            999899999999999999999999999999999986  667899999999999999999999999999999999999999


Q ss_pred             EEeCCCCCcceEEEEEEEecCcee-----eeccceeEEec
Q psy14674        359 MQPNPRNNRDLDFTVEVNFKGELC-----EMSESNDYQVD  393 (519)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  393 (519)
                      +++++.|+|+++|+|+|.++|+..     ..+.++.|+|+
T Consensus       289 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (328)
T 1g6q_1          289 CSPNEKNNRDLNIKISYKFESNGIDGNSRSRKNEGSYLMH  328 (328)
T ss_dssp             EEEETTEEEEEEEEEEEEEECCSSTHHHHCEEEEEEEEEC
T ss_pred             EEECCCCCceEEEEEEEEecCccCcccccccccceeEEeC
Confidence            999999999999999999999887     77778889885

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=100.00  E-value=1.2e-52  Score=429.03  Aligned_cols=313  Identities=48%  Similarity=0.911  Sum_probs=286.4

Q ss_pred             chhhhccccccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHH
Q psy14674         41 DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIV  120 (519)
Q Consensus        41 ~~yf~~y~~~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~  120 (519)
                      ..||++|++++++..|++|..|+..|+++|.......++++|||||||+|.+++.++++|+.+|+|+|+|+|++.|++++
T Consensus        27 ~~Y~~~y~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~  106 (340)
T 2fyt_A           27 GVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDII  106 (340)
T ss_dssp             ---CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHH
T ss_pred             hhHHHhhcchhHHHHHhcCHHHHHHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHH
Confidence            34999999999999999999999999999988777888999999999999999999999888999999999999999999


Q ss_pred             HHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccccccccC
Q psy14674        121 DKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQG  200 (519)
Q Consensus       121 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~~~  200 (519)
                      +.+++.++++++++|+++++++.  ++||+|+++++++.+.++..+..++.++.++|||||.++|+.++           
T Consensus       107 ~~~~~~~~i~~~~~d~~~~~~~~--~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~-----------  173 (340)
T 2fyt_A          107 RLNKLEDTITLIKGKIEEVHLPV--EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICT-----------  173 (340)
T ss_dssp             HHTTCTTTEEEEESCTTTSCCSC--SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEE-----------
T ss_pred             HHcCCCCcEEEEEeeHHHhcCCC--CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEcccce-----------
Confidence            99999888999999999877665  78999999998888888888999999999999999999999988           


Q ss_pred             CCcccccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhhhhhhcCCcccccCCCCcccCCceEEEEecC
Q psy14674        201 GQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLY  280 (519)
Q Consensus       201 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~~~v~~~~~~~~ls~~~~~~~~dl~  280 (519)
                                         .++.++++..+....+.+|.++||++++.+.+.+..+|+++.+++..++++|+.+.++|+.
T Consensus       174 -------------------~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~  234 (340)
T 2fyt_A          174 -------------------ISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCH  234 (340)
T ss_dssp             -------------------EEEEEECCHHHHHHHTGGGGCBTTBCCGGGHHHHTTBCEEECCCGGGBCBCCEEEEEEETT
T ss_pred             -------------------EEEEEecchhHhhhhhcccccccCcChHHHHHhhhcCcEEEEechhhcccCCEEEEEEECC
Confidence                               6777777766766778899999999999999988999999999999999999999999999


Q ss_pred             CCCCCCceeeeeEEEEEEecceeeEEEEEEEEEE-cCCCCceEEecCCCCCCCCeeeEEEeeCceeeecCCCEEEEEEEE
Q psy14674        281 TITKADLSFTSPFTLQVRRNDYVQALVTFFSVEF-SKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGM  359 (519)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~-~~~~~~v~lsT~P~~~~thW~q~v~~l~~p~~v~~g~~i~~~~~~  359 (519)
                      +...+++.+..++.+++.++|.+|||++|||+.| .++++++.|||+|..+.|||+|++|+|++|+.|++|+.|+|++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~wfd~~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~  314 (340)
T 2fyt_A          235 TTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTV  314 (340)
T ss_dssp             TCCGGGGSEEEEEEEEBCSCEEEEEEEEEEEEEECTTCSSCEEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEE
T ss_pred             CCcccccceEeeEEEEEccCcEEEEEEEEEEEEeecCCCCCEEEECCCCcCCCccccEEEEeCCceEcCCCCEEEEEEEE
Confidence            9988888899999999999999999999999999 466688999999999999999999999999999999999999999


Q ss_pred             EeCCCCCcceEEEEEEEecCceeeeccceeEEec
Q psy14674        360 QPNPRNNRDLDFTVEVNFKGELCEMSESNDYQVD  393 (519)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (519)
                      +++++|+|+++|+|++...        +|.|.|+
T Consensus       315 ~~~~~~~r~~~~~~~~~~~--------~~~~~~~  340 (340)
T 2fyt_A          315 HKNKKDPRSLTVTLTLNNS--------TQTYGLQ  340 (340)
T ss_dssp             EECSSCTTSEEEEEEETTE--------EEEEEEC
T ss_pred             EECCCCCceEEEEEEEEcc--------eEEEecC
Confidence            9999999999999998542        4667663

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=100.00  E-value=8.2e-53  Score=436.07  Aligned_cols=315  Identities=32%  Similarity=0.631  Sum_probs=281.3

Q ss_pred             ccCCCcchhhhccccccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHH
Q psy14674         35 EDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVE  114 (519)
Q Consensus        35 ~~~~~~~~yf~~y~~~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~  114 (519)
                      ..+.+.+.||++|+++..|..|++|..|+..|.++|.......++++|||||||+|.+++.++++|+++|+|+|+|+|++
T Consensus        20 ~~~~~~~~yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~   99 (376)
T 3r0q_C           20 DKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMAD   99 (376)
T ss_dssp             --------CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHH
T ss_pred             cccccHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHH
Confidence            45567788999999999999999999999999999998888889999999999999999999999988999999999999


Q ss_pred             HHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccc
Q psy14674        115 YAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICG  194 (519)
Q Consensus       115 ~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~  194 (519)
                      .|+++++.+++.++++++++|++++.++   ++||+|+++++++++.++..+..++.++.++|||||.++|+.++     
T Consensus       100 ~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~-----  171 (376)
T 3r0q_C          100 HARALVKANNLDHIVEVIEGSVEDISLP---EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR-----  171 (376)
T ss_dssp             HHHHHHHHTTCTTTEEEEESCGGGCCCS---SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE-----
T ss_pred             HHHHHHHHcCCCCeEEEEECchhhcCcC---CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe-----
Confidence            9999999999999999999999988776   78999999999999998889999999999999999999999999     


Q ss_pred             cccccCCCcccccceeEEecCCCcceeeecccCccccccce----------eee---ecccccChhhhhhh--------h
Q psy14674        195 IEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKI----------TWW---DNVYGFDMSCIKKI--------A  253 (519)
Q Consensus       195 i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----------~~w---~~~~G~d~~~~~~~--------~  253 (519)
                                               .+..++.+..+.....          .||   .+.||+|++.+.+.        .
T Consensus       172 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~W~~fw~~~~~~~G~d~~~~~~~~~~~~~~~~  226 (376)
T 3r0q_C          172 -------------------------MWLAPIKSNIADRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYY  226 (376)
T ss_dssp             -------------------------EEEEEECCTHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCGGGHHHHHHHHHHHH
T ss_pred             -------------------------EEEEeecchHHhhhhhhhhhhhhhhhhhhhccCccccCChHHHHhhhhhhhhhhc
Confidence                                     5666666554443333          678   78999999999887        6


Q ss_pred             hcCCcccccCCCCcccCCceEEEEecCCCCCCCce-eeeeEEEEE-EecceeeEEEEEEEEEEcCC-----CCceEEecC
Q psy14674        254 IKEPLVDVVDPKQVVTSSCLLKEIDLYTITKADLS-FTSPFTLQV-RRNDYVQALVTFFSVEFSKC-----HKRIGFSTA  326 (519)
Q Consensus       254 ~~~~~v~~~~~~~~ls~~~~~~~~dl~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~wf~~~~~~~-----~~~v~lsT~  326 (519)
                      ..+|+++.+.|.+++++|+.++++||.++..+++. ++.+|++++ .++|.+|||++|||++|+++     ++.+.|||+
T Consensus       227 ~~~p~~~~~~~~~~lt~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~wfd~~~~~~~~~~~~~~v~lSt~  306 (376)
T 3r0q_C          227 IQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTA  306 (376)
T ss_dssp             TSBCEEECCCGGGBCBCCEEEEEEETTTCCGGGTSEEEEEEEEBCSCSCEEEEEEEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred             ccCceEEEEChHHccCCCeEEEEEEcCcCCHHHhcccccceEEEEeccCceEEEEEEEEEEEecCCccCCCCCccEEECC
Confidence            68899999999999999999999999999988885 899999999 99999999999999999643     347999999


Q ss_pred             CC-CCCCCeeeEEEeeCceeeecCCCEEEEEEEEEeCCCCCcceEEEEEEEecCcee
Q psy14674        327 PE-AHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELC  382 (519)
Q Consensus       327 P~-~~~thW~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (519)
                      |. .+.|||+|++|+|++|+.|++|+.|+|++++++|++|+|+++|+|+|.++++..
T Consensus       307 P~~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  363 (376)
T 3r0q_C          307 PSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASG  363 (376)
T ss_dssp             CCSSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEEEEEECSSS
T ss_pred             CCcCCCCceeeEEEEECCceecCCCCEEEEEEEEEECCCCCeeEEEEEEEEecCcCC
Confidence            99 568999999999999999999999999999999999999999999999987654

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=100.00  E-value=1.6e-46  Score=385.14  Aligned_cols=320  Identities=33%  Similarity=0.574  Sum_probs=264.5

Q ss_pred             CCcchhhhccccccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHH
Q psy14674         38 TSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAK  117 (519)
Q Consensus        38 ~~~~~yf~~y~~~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~  117 (519)
                      .+.+.||+.|+++..|..|++|..|+..|.++|+......++++|||||||+|.+++.++++|+++|+|+|+|+|++.|+
T Consensus        10 ~~~~~y~~~y~~~~~~~~ml~d~~r~~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~   89 (348)
T 2y1w_A           10 SSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAE   89 (348)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTCHHHHHHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHH
T ss_pred             ccHHHHHHHHhhhhHHHHHhcchHHHHHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHH
Confidence            34567999999999999999999999999999998877788999999999999999999999888999999999889999


Q ss_pred             HHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccccccc
Q psy14674        118 EIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIED  197 (519)
Q Consensus       118 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~  197 (519)
                      ++++.+++.++++++.+|+++++++   ++||+|+++++++++..+..+.. +..+.++|||||.++|+.++        
T Consensus        90 ~~~~~~~l~~~v~~~~~d~~~~~~~---~~~D~Ivs~~~~~~~~~~~~~~~-l~~~~~~LkpgG~li~~~~~--------  157 (348)
T 2y1w_A           90 VLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISEPMGYMLFNERMLES-YLHAKKYLKPSGNMFPTIGD--------  157 (348)
T ss_dssp             HHHHHTTCTTTEEEEESCTTTCCCS---SCEEEEEECCCBTTBTTTSHHHH-HHHGGGGEEEEEEEESCEEE--------
T ss_pred             HHHHHcCCCCcEEEEEcchhhCCCC---CceeEEEEeCchhcCChHHHHHH-HHHHHhhcCCCeEEEEecCc--------
Confidence            9999999988899999999987666   68999999998887777665554 45667999999999999988        


Q ss_pred             ccCCCcccccceeEEecCCCcceeeecccCccccc---cceeee--ecccccChhhhhhhh----hcCCcccccCCCCcc
Q psy14674        198 LQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKE---DKITWW--DNVYGFDMSCIKKIA----IKEPLVDVVDPKQVV  268 (519)
Q Consensus       198 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~w--~~~~G~d~~~~~~~~----~~~~~v~~~~~~~~l  268 (519)
                                            ++..+++...+..   ....+|  ..++|++++.+....    +..|+++..+.... 
T Consensus       158 ----------------------~~~~~i~~~~~~~~~~~~~~~w~~~~~~g~d~~~l~~~~~~~~f~~p~~d~~~~~~~-  214 (348)
T 2y1w_A          158 ----------------------VHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRIL-  214 (348)
T ss_dssp             ----------------------EEEEEECCHHHHHHHHHHHGGGCCSCBTTBCCGGGHHHHHHHHHTSCEEECCCGGGB-
T ss_pred             ----------------------EEEEEecchHHhhhhccccCcccccccCcccHHHhhhHHHhhhccCCeEEeECCeee-
Confidence                                  5555554443321   124566  468999999986654    35677776665433 


Q ss_pred             cCCceEEEEecCCCCCCCc-eeeeeEEEEEEecceeeEEEEEEEEEEcCCCCceEEecCCCCCCCCeeeEEEeeCceeee
Q psy14674        269 TSSCLLKEIDLYTITKADL-SFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTV  347 (519)
Q Consensus       269 s~~~~~~~~dl~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~~~v~lsT~P~~~~thW~q~v~~l~~p~~v  347 (519)
                      ..+.....+||.+...+++ .+..+++|++.++|.+|||++|||++|++++..+.|||+|..+.|||+|++|+|++|+.|
T Consensus       215 ~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wfd~~~~~~~~~v~lSt~P~~~~thW~q~~~~l~~p~~v  294 (348)
T 2y1w_A          215 MAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFA  294 (348)
T ss_dssp             CBCCEEEEEETTTCCGGGGSEEEEEEEEEBSSCEEEEEEEEEEEEEEECSSCEEEEECCTTSCCCTTCEEEEEEEEEEEE
T ss_pred             cCcceEEEEECCcCChHHhceeeeeEEEEEccCcEEEEEEEEEEEEEcCCCCceEEECCCCcCCCeeeeEEEeeCCceEe
Confidence            3344567789999888887 478899999999999999999999999977778999999999999999999999999999


Q ss_pred             cCCCEEEEEEEEEeCCCCCcceEEEEEEEecCceeeeccceeEEeccch
Q psy14674        348 KKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQVDDRL  396 (519)
Q Consensus       348 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (519)
                      ++||+|+|++.+++|+++.|+++|+  +.+++..+  +.++..++++|.
T Consensus       295 ~~g~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~  339 (348)
T 2y1w_A          295 KAGDTLSGTCLLIANKRQSYDISIV--AQVDQTGS--KSSNLLDLKNPF  339 (348)
T ss_dssp             CTTCEEEEEEEEEECTTSSEEEEEE--EEETTTCC--EEEEEEETTSCE
T ss_pred             CCCCEEEEEEEEEECCCCCcEEEEE--EEEccccc--eecceEEccCcc
Confidence            9999999999999998877655554  45555543  345677777774

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=100.00  E-value=2.6e-43  Score=374.56  Aligned_cols=316  Identities=33%  Similarity=0.581  Sum_probs=260.3

Q ss_pred             hhhhccccccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHH
Q psy14674         42 YYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVD  121 (519)
Q Consensus        42 ~yf~~y~~~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~  121 (519)
                      .|++.|.....+..|+.+..+++.|.++++......++++|||||||+|.+++.+++.|+.+|+|+|+|+|++.|+++++
T Consensus       122 ~~~~~y~~~~~~~~~L~d~~~t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~  201 (480)
T 3b3j_A          122 QYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVK  201 (480)
T ss_dssp             EEEEGGGCSCHHHHHHHHHHHHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHH
T ss_pred             hHHHHHhhhccchhhhcChHhHHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHH
Confidence            57777887777889999999999999999887767788999999999999999999998889999999999999999999


Q ss_pred             HCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccccccccCC
Q psy14674        122 KNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGG  201 (519)
Q Consensus       122 ~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~~~~  201 (519)
                      .+++.++++++.+|+++++++   ++||+|+|+++++++..+..+..+ ..+.++|||||.++++.++            
T Consensus       202 ~~gl~~~v~~~~~d~~~~~~~---~~fD~Ivs~~~~~~~~~e~~~~~l-~~~~~~LkpgG~li~~~~~------------  265 (480)
T 3b3j_A          202 SNNLTDRIVVIPGKVEEVSLP---EQVDIIISEPMGYMLFNERMLESY-LHAKKYLKPSGNMFPTIGD------------  265 (480)
T ss_dssp             HTTCTTTEEEEESCTTTCCCS---SCEEEEECCCCHHHHTCHHHHHHH-HHGGGGEEEEEEEESCEEE------------
T ss_pred             HcCCCCcEEEEECchhhCccC---CCeEEEEEeCchHhcCcHHHHHHH-HHHHHhcCCCCEEEEEece------------
Confidence            999988899999999987666   689999999988877777666554 4677999999999999888            


Q ss_pred             CcccccceeEEecCCCcceeeecccCccccc---cceeee--ecccccChhhhhhhh----hcCCcccccCCCCcccCCc
Q psy14674        202 QDHVVGQCVRVLFPDKASLFICGIEDRQYKE---DKITWW--DNVYGFDMSCIKKIA----IKEPLVDVVDPKQVVTSSC  272 (519)
Q Consensus       202 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~w--~~~~G~d~~~~~~~~----~~~~~v~~~~~~~~ls~~~  272 (519)
                                        .++.++....+..   ....+|  ..++|++++.+....    +..|+++..+.....+.+.
T Consensus       266 ------------------~~~~pi~~~~l~~e~~~~~~~w~~~~~~g~dl~~l~~~~~~~~f~~pvvd~~~~~~~y~~tl  327 (480)
T 3b3j_A          266 ------------------VHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSV  327 (480)
T ss_dssp             ------------------EEEEEECCHHHHHHHHHHHHHHHSSCBTTBCCGGGHHHHHHHHTTSCEECCCCSTTBCSCCE
T ss_pred             ------------------eeeeccCchHHHHHHhhccCccccccCCCcChhhhhhHHHHhccCCcEEEEeecccccchhh
Confidence                              5555554443321   123456  368999999987654    3457777776665555554


Q ss_pred             eEEEEecCCCCCCCce-eeeeEEEEEEecceeeEEEEEEEEEEcCCCCceEEecCCCCCCCCeeeEEEeeCceeeecCCC
Q psy14674        273 LLKEIDLYTITKADLS-FTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGE  351 (519)
Q Consensus       273 ~~~~~dl~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~~~v~lsT~P~~~~thW~q~v~~l~~p~~v~~g~  351 (519)
                       ...+|+.+...+++. ++.+++|++.++|.+|||++|||++|++++..+.|||+|..+.|||+|++|+|++|+.|++||
T Consensus       328 -~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~~hg~~~wFd~~~~~~~~~v~lST~P~~~~thW~q~~~~l~~p~~v~~g~  406 (480)
T 3b3j_A          328 -KYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGD  406 (480)
T ss_dssp             -EEEEETTTCCTTTTTEEEEEEEEECSSCEEEEEEEEEEEEEEECSSCEEESSSCCSSSCCCSEEEEEEEEEEEEECTTC
T ss_pred             -hhhhhhhcCChhhhcceeeeEEEEEccCcEEEEEEEEEEEEEcCCCCceEEeCCCCcCCCeeeeEEEEeCCceEeCCCC
Confidence             468999998888874 678999999999999999999999999777789999999999999999999999999999999


Q ss_pred             EEEEEEEEEeCCCCCcceEEEEEEEecCceeeeccceeEEeccch
Q psy14674        352 EVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQVDDRL  396 (519)
Q Consensus       352 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (519)
                      .|+|++.+++|+++.|+  ++++|.+++...  ..++..++++|.
T Consensus       407 ~i~g~~~~~~~~~~~~~--v~~~~~~~~~~~--~~~~~~~~~~~~  447 (480)
T 3b3j_A          407 TLSGTCLLIANKRQSYD--ISIVAQVDQTGS--KSSNLLDLKNPF  447 (480)
T ss_dssp             EEEEEEEEEECTTSSEE--EEEEEEETTTCC--EEEEEEESSSCE
T ss_pred             EEEEEEEEEECCCCCcE--EEEEEEEccCCc--ccCCeEeccCcc
Confidence            99999999999887775  555555665443  345666776663

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=100.00  E-value=2.1e-43  Score=380.79  Aligned_cols=270  Identities=17%  Similarity=0.244  Sum_probs=235.1

Q ss_pred             ccHHhhhcHHHHHHHHHHHHhc--------CCCCCCCEEEEECCcccHHHHHHHHcCC---C--EEEEEechHHHHHHHH
Q psy14674         52 IHEEMLKDEVRTMTYRNSMYHN--------KHLFKGKIVLDIGCGTGILSMFAAKSGA---A--RVIGIECSNIVEYAKE  118 (519)
Q Consensus        52 ~~~~~l~d~~r~~~y~~ai~~~--------~~~~~~~~VLDiGcGtG~ls~~la~~g~---~--~V~gvD~s~~~~~A~~  118 (519)
                      .++.+-+|.+++..|++||...        ....++++|||||||+|.|+++++++++   .  +|||||.|+|+..|++
T Consensus       323 tYevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~  402 (637)
T 4gqb_A          323 TYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLE  402 (637)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHH
T ss_pred             hhhhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH
Confidence            4566778999999999999752        2334557899999999999776666643   3  7899999999999999


Q ss_pred             HHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccccccc
Q psy14674        119 IVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDL  198 (519)
Q Consensus       119 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~  198 (519)
                      .++.|++.++|+++++|++++.+|   +++|+||||+||+++.+|.++ +++.++.|+|||||+++|+.++         
T Consensus       403 ~v~~N~~~dkVtVI~gd~eev~LP---EKVDIIVSEwMG~fLl~E~ml-evL~Ardr~LKPgGimiPs~at---------  469 (637)
T 4gqb_A          403 NWQFEEWGSQVTVVSSDMREWVAP---EKADIIVSELLGSFADNELSP-ECLDGAQHFLKDDGVSIPGEYT---------  469 (637)
T ss_dssp             HHHHHTTGGGEEEEESCTTTCCCS---SCEEEEECCCCBTTBGGGCHH-HHHHHHGGGEEEEEEEESCEEE---------
T ss_pred             HHHhccCCCeEEEEeCcceeccCC---cccCEEEEEcCcccccccCCH-HHHHHHHHhcCCCcEEccccce---------
Confidence            999999999999999999999999   899999999999999999988 6889999999999999999999         


Q ss_pred             cCCCcccccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhhhhhhcCCcccccCCCCcccCCceEEEEe
Q psy14674        199 QGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEID  278 (519)
Q Consensus       199 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~~~v~~~~~~~~ls~~~~~~~~d  278 (519)
                                           +|++|+++..++.+...+|...+++++.      +..|.+..+++...+++++.+++||
T Consensus       470 ---------------------lyiapi~~~~l~~e~~~~~~~~~~~~~~------~~~p~Vv~~~~~~~Ls~p~~~~~fd  522 (637)
T 4gqb_A          470 ---------------------SFLAPISSSKLYNEVRACREKDRDPEAQ------FEMPYVVRLHNFHQLSAPQPCFTFS  522 (637)
T ss_dssp             ---------------------EEEEEEECHHHHHHHHTTCCTTSCTTGG------GGSCEECBCCSCEECSCCEEEEEEE
T ss_pred             ---------------------EEEEEecCHHHHHHHHhcccccccchhh------cCCcEEEEecCccccCCCEEEEEEE
Confidence                                 7788888877777777788888887643      3458888888899999999999999


Q ss_pred             cCCCCC-CCceeeeeEEEEEEecceeeEEEEEEEEEEcCCCCceEEecCCCC---CCCCeeeEEEeeCceeeecCCCEEE
Q psy14674        279 LYTITK-ADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA---HYTHWKQTVFYLNEHLTVKKGEEVV  354 (519)
Q Consensus       279 l~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~~~v~lsT~P~~---~~thW~q~v~~l~~p~~v~~g~~i~  354 (519)
                      +.+... .+..+..+++|++.++|++|||++|||+.|+   +++.|||+|..   +.|||+|++|+|++|+.|++||+|+
T Consensus       523 ~~~~~~~~~~~~~~~~~f~i~~~g~vhGf~~wFD~~f~---~~V~LST~P~~~s~~~THW~Q~vfpL~~Pl~V~~Gd~I~  599 (637)
T 4gqb_A          523 HPNRDPMIDNNRYCTLEFPVEVNTVLHGFAGYFETVLY---QDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTIC  599 (637)
T ss_dssp             SSCCSTTCCCCEEEEEEEECCSCEEEEEEEEEEEEEEE---TTEEEECSGGGCCTTCCSCCCEEEEEEEEEEECTTCEEE
T ss_pred             CCCCCccccceEEEEEEEEecCCcEEEEEEEEEEEEee---CCeEEECCCCCCCCCCCcccCeEEEeCCCeEECCCCEEE
Confidence            977654 4557788999999999999999999999998   67999999963   4699999999999999999999999


Q ss_pred             EEEEEEeCCC
Q psy14674        355 GSFGMQPNPR  364 (519)
Q Consensus       355 ~~~~~~~~~~  364 (519)
                      |+|.++.+.+
T Consensus       600 ~~~~R~~d~~  609 (637)
T 4gqb_A          600 VRFWRCSNSK  609 (637)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEEEeCCC
Confidence            9999887653

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=100.00  E-value=2.2e-41  Score=362.52  Aligned_cols=279  Identities=15%  Similarity=0.181  Sum_probs=229.1

Q ss_pred             cccHHhhhcHHHHHHHHHHHHhcCC-CC----CCCEEEEECCcccHHHHHHHHc----C----------CCEEEEEechH
Q psy14674         51 GIHEEMLKDEVRTMTYRNSMYHNKH-LF----KGKIVLDIGCGTGILSMFAAKS----G----------AARVIGIECSN  111 (519)
Q Consensus        51 ~~~~~~l~d~~r~~~y~~ai~~~~~-~~----~~~~VLDiGcGtG~ls~~la~~----g----------~~~V~gvD~s~  111 (519)
                      ..++.|.+|.+|+..|++||..+.. ..    +++.|||||||+|.|+++++++    |          +.+|+|||.|+
T Consensus       377 ~tYe~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp  456 (745)
T 3ua3_A          377 GVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNP  456 (745)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCH
T ss_pred             HHHHHHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCCh
Confidence            4678999999999999999987632 22    2568999999999998654433    2          23999999997


Q ss_pred             HHHHHHHHHHHCCCCCcEEEEEceeeEeecC---CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        112 IVEYAKEIVDKNNLSDVVTILKGKVEEVELP---FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       112 ~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      ++..+.+....|++.++|+++++|++++.+|   ...+++|+||||+||+++.+|.. ..++..+.++|||||+++|+.+
T Consensus       457 ~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~-pe~Ld~v~r~Lkp~Gi~iP~~~  535 (745)
T 3ua3_A          457 NAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELS-PECLDGVTGFLKPTTISIPQKY  535 (745)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSH-HHHHHTTGGGSCTTCEEESCEE
T ss_pred             HHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhcc-HHHHHHHHHhCCCCcEEECCcc
Confidence            5555555555699999999999999999883   00189999999999999988854 4567777899999999999999


Q ss_pred             cccccccccccCCCcccccceeEEecCCCcceeeecccCccccccceeeeec--ccccC-----h--------------h
Q psy14674        189 SLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDN--VYGFD-----M--------------S  247 (519)
Q Consensus       189 ~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~--~~G~d-----~--------------~  247 (519)
                      +                              +|++|+++..++.+-..++.+  +|||.     +              +
T Consensus       536 t------------------------------~ylaPi~~~~l~~~v~~~~~~~~~~G~p~~g~~~P~~~~~g~~i~~~~~  585 (745)
T 3ua3_A          536 T------------------------------SYVKPIMSTHIHQTIKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQ  585 (745)
T ss_dssp             E------------------------------EEEEEEECHHHHHHHHTCCCCGGGTTSCCSSSCCCEECTTSCEECCCTT
T ss_pred             E------------------------------EEEEEecCHHHHHHHHhhccccccccccccccccccccccccccccccc
Confidence            9                              777777776654333223222  23331     1              3


Q ss_pred             hhhhhhhcCCcccccCCCCcccC-CceEEEEecCCCCCCCceeeeeEEEEEEecceeeEEEEEEEEEEcCCCCceEEecC
Q psy14674        248 CIKKIAIKEPLVDVVDPKQVVTS-SCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTA  326 (519)
Q Consensus       248 ~~~~~~~~~~~v~~~~~~~~ls~-~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~~~v~lsT~  326 (519)
                      +....++.+|+|..+.+..+|++ ++.+++||+.+...++..+...++|++.++|.+|||++|||+.|+   ++|.|||+
T Consensus       586 ~~~~~a~e~PyVv~l~~~~~Ls~~pq~vftFdhp~~~~~d~~r~~~~~F~~~r~g~iHGfagwFDi~Ly---k~V~LST~  662 (745)
T 3ua3_A          586 GHVRNNMDQIYVVYLSKYIPLAETTKPVFTFEHPNFMNSSNERSDSIEFVMDRNADLMGFAGYFDLQLY---KTVMLSIE  662 (745)
T ss_dssp             CHHHHHHSSCEEECCCSCEESSSSCEEEEEEESSCTTCCCSCEEEEEEEECCSSEEEEEEEEEEEEEEE---TTEEEECS
T ss_pred             ccccccccccEEEeeccceecCCCCceEEEEECCCCCccccceeEEEEEEeCCCcEEEEEEEEEEEEec---CCcEEecC
Confidence            45677789999999999999999 999999999998888889999999999999999999999999999   57999999


Q ss_pred             CCCC---CCCeeeEEEeeCceeeecCCCEEEEEEEEEeCC
Q psy14674        327 PEAH---YTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNP  363 (519)
Q Consensus       327 P~~~---~thW~q~v~~l~~p~~v~~g~~i~~~~~~~~~~  363 (519)
                      |..+   .|||+|++|||++|+.|++||.|++++..+.+.
T Consensus       663 P~t~s~~mThWfQtfFPL~ePL~V~~GdeI~g~~~R~~d~  702 (745)
T 3ua3_A          663 PSTHTPGMVSWFPAVIPLRDQLRVGEGDRISLKIDRKVDN  702 (745)
T ss_dssp             STTCCTTCCSCCCEEEEEEEEEEECTTCEEEEEEEEEEET
T ss_pred             CCCCCCCCccceeEEEecCCceEeCCCCEEEEEEEEEcCC
Confidence            9875   689999999999999999999999999988654

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.92  E-value=3.6e-25  Score=226.52  Aligned_cols=121  Identities=59%  Similarity=1.082  Sum_probs=112.6

Q ss_pred             ccccccccceeccc-eeeeeceEEEEeecceeeEEEEEEEEEEcCCCceeEEecCCCCCCCCceeEEEeecccccccCCC
Q psy14674        399 LGLRDRDCMYTKLY-TIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGE  477 (519)
Q Consensus       399 ~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~~~~v~lsT~P~~~~THWkQt~~~l~~~~~v~~g~  477 (519)
                      ..+..+|+.+.+++ +.|.++|++++++++.+|||++|||+.|.+++.+|.|||||.++.|||||++|+|++|+.|++|+
T Consensus       228 ~~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~Fd~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~  307 (349)
T 3q7e_A          228 CLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGE  307 (349)
T ss_dssp             EEEEEEETTTCCGGGGSEEEEEEEEBCSSEEEEEEEEEEEEECTTSSSCCEEECSTTSCCCTTCEEEEEEEEEEEECTTC
T ss_pred             EEEEEEEcccCchhhcceeeeEEEEEccCCEEEEEEEEEEEEecCCCCccEEECCCCcCCCcceeEEEEECCceEeCCCC
Confidence            34566788776555 57999999999999999999999999999888889999999999999999999999999999999


Q ss_pred             EEEEEEEEEeCCCCCceeEEEEEEEEcCceeeeeeeeeEeeC
Q psy14674        478 EVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR  519 (519)
Q Consensus       478 ~i~g~~~~~~~~~~~r~l~i~~~~~~~~~~~~~~~~~~~~~~  519 (519)
                      .|+|+|.|++|++|+|+|+|+|+|.++|+..+++.++.|+||
T Consensus       308 ~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (349)
T 3q7e_A          308 EIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR  349 (349)
T ss_dssp             EEEEEEEEEECSSCSSCEEEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEEEEEEEECCCCCeeEEEEEEEEeCCcccccccCceEecC
Confidence            999999999999999999999999999999998889999997

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.91  E-value=3.5e-24  Score=219.47  Aligned_cols=118  Identities=24%  Similarity=0.370  Sum_probs=103.4

Q ss_pred             ccccccccceeccc----eeeeeceEEEEeecceeeEEEEEEEEEEcCC--CceeEEecCCCCCCCCceeEEEeeccccc
Q psy14674        399 LGLRDRDCMYTKLY----TIVHAPFTLQVRRNDYVQALVTFFSVEFSKC--HKRIGFSTAPEAHYTHWKQTVFYLNEHLT  472 (519)
Q Consensus       399 ~~~~~~~~~~~~~~----~~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~--~~~v~lsT~P~~~~THWkQt~~~l~~~~~  472 (519)
                      ..+..+|+++.+++    ..|..+|+++++++|.+|||++|||+.|.++  +.+|.|||||.+|+||||||+|+|++|+.
T Consensus       252 ~~i~~~D~~~~~~~~~~~~~~~~~f~~~~~~~g~vhg~~~WFd~~f~~~~~~~~v~lST~P~~~~THW~Q~v~~L~~Pi~  331 (376)
T 4hc4_A          252 QRFAQLELSRAGLEQELEAGVGGRFRCSCYGSAPMHGFAIWFQVTFPGGESEKPLVLSTSPFHPATHWKQALLYLNEPVQ  331 (376)
T ss_dssp             EEEEEEETTCTTHHHHHHHCEEEEEEEECCSSEEEEEEEEEEEEEECCCC--CCEEEECCTTSCCCTTCEEEEEEEEEEE
T ss_pred             EEEEEEECCCCCccccccccceeEEEEEecCCcEEEEEEEEEEEEecCCCCCCceEEeCCCCcCCCceeeEEEEeCCceE
Confidence            35566777775543    4688899999999999999999999999753  56899999999999999999999999999


Q ss_pred             ccCCCEEEEEEEEEeCCCCCceeEEEEEEEEcCceeeeeeeeeEeeC
Q psy14674        473 VKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR  519 (519)
Q Consensus       473 v~~g~~i~g~~~~~~~~~~~r~l~i~~~~~~~~~~~~~~~~~~~~~~  519 (519)
                      |++||.|+|+|+|++|++|+|+|+|+|+|.++++...   ++.|+|+
T Consensus       332 V~~G~~I~g~i~~~~~~~n~R~~~i~i~~~~~~~~~~---~~~~~~~  375 (376)
T 4hc4_A          332 VEQDTDVSGEITLLPSRDNPRRLRVLLRYKVGDQEEK---TKDFAME  375 (376)
T ss_dssp             ECTTCEEEEEEEEEECSSCTTSEEEEEEEEETTSCCE---EEEEEEC
T ss_pred             eCCCCEEEEEEEEEECCCCCceeEEEEEEEeCCCCcc---eEEEeCC
Confidence            9999999999999999999999999999999876543   5778884

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.89  E-value=4.1e-23  Score=209.54  Aligned_cols=120  Identities=32%  Similarity=0.611  Sum_probs=109.1

Q ss_pred             cccccccceeccc-eeeeeceEEEEeecceeeEEEEEEEEEEcC--CCceeEEecCCCCCCCCceeEEEeecccccccCC
Q psy14674        400 GLRDRDCMYTKLY-TIVHAPFTLQVRRNDYVQALVTFFSVEFSK--CHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKG  476 (519)
Q Consensus       400 ~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~g~~~wFd~~F~~--~~~~v~lsT~P~~~~THWkQt~~~l~~~~~v~~g  476 (519)
                      .+..+|+.+.+.+ +.|..+|+++++++|.+|||++|||+.|.+  ++.+|.|||+|.++.|||+|++|+|++|+.|++|
T Consensus       201 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wfd~~~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g  280 (328)
T 1g6q_1          201 KLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETG  280 (328)
T ss_dssp             EEEEEETTTCCGGGGSEEEEEEEEBCSSCEEEEEEEEEEEECCCCTTSCCCEEECSTTSCCCTTCEEEEEEEEEEECCTT
T ss_pred             EEEEEECCCCChhHhceeeeEEEEEecCcEEEEEEEEEEEEcCCCCCCCceEEECCCCcCCCcceeEEEEeCCceecCCC
Confidence            4556677765443 578899999999999999999999999987  6778999999999999999999999999999999


Q ss_pred             CEEEEEEEEEeCCCCCceeEEEEEEEEcCcee-----eeeeeeeEeeC
Q psy14674        477 EEVVGSFGMQPNPRNNRDLDFTVEVNFKGELC-----EMSESNDYRMR  519 (519)
Q Consensus       477 ~~i~g~~~~~~~~~~~r~l~i~~~~~~~~~~~-----~~~~~~~~~~~  519 (519)
                      +.|+|++.++++++|+|+|+|+++|..+|...     +...++.|+|+
T Consensus       281 ~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (328)
T 1g6q_1          281 DTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNSRSRKNEGSYLMH  328 (328)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEEEEEEECCSSTHHHHCEEEEEEEEEC
T ss_pred             CEEEEEEEEEECCCCCceEEEEEEEEecCccCcccccccccceeEEeC
Confidence            99999999999999999999999999999887     77888999996

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.85  E-value=1.6e-21  Score=201.48  Aligned_cols=113  Identities=22%  Similarity=0.396  Sum_probs=99.3

Q ss_pred             ccccccccceeccc-e-eeeeceEEEE-eecceeeEEEEEEEEEEcCC-----CceeEEecCCC-CCCCCceeEEEeecc
Q psy14674        399 LGLRDRDCMYTKLY-T-IVHAPFTLQV-RRNDYVQALVTFFSVEFSKC-----HKRIGFSTAPE-AHYTHWKQTVFYLNE  469 (519)
Q Consensus       399 ~~~~~~~~~~~~~~-~-~~~~~f~~~~-~~~~~~~g~~~wFd~~F~~~-----~~~v~lsT~P~-~~~THWkQt~~~l~~  469 (519)
                      ..+..+|+.+.+.+ + .|+++|++++ +++|.+|||++|||+.|.++     +++|.|||||. .+.|||||++|+|++
T Consensus       245 ~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~wfd~~~~~~~~~~~~~~v~lSt~P~~~~~thW~q~~~~l~~  324 (376)
T 3r0q_C          245 TIVKEMDCLTASVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSN  324 (376)
T ss_dssp             EEEEEEETTTCCGGGTSEEEEEEEEBCSCSCEEEEEEEEEEEEEEEEETTEEEEEEEEEECCCCSSCCCTTCEEEEEEEE
T ss_pred             eEEEEEEcCcCCHHHhcccccceEEEEeccCceEEEEEEEEEEEecCCccCCCCCccEEECCCCcCCCCceeeEEEEECC
Confidence            45667788875544 3 4899999999 99999999999999999643     45799999999 579999999999999


Q ss_pred             cccccCCCEEEEEEEEEeCCCCCceeEEEEEEEEcCceeeee
Q psy14674        470 HLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMS  511 (519)
Q Consensus       470 ~~~v~~g~~i~g~~~~~~~~~~~r~l~i~~~~~~~~~~~~~~  511 (519)
                      |+.|++|+.|+|+|+|++|++|+|+|+|+|+|.++++.....
T Consensus       325 p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  366 (376)
T 3r0q_C          325 PINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASGNPK  366 (376)
T ss_dssp             EEEECTTCEEEEEEEEEECSSCTTSEEEEEEEEEECSSSCCC
T ss_pred             ceecCCCCEEEEEEEEEECCCCCeeEEEEEEEEecCcCCCCC
Confidence            999999999999999999999999999999999988765433

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.84  E-value=4.1e-21  Score=195.65  Aligned_cols=113  Identities=34%  Similarity=0.661  Sum_probs=100.2

Q ss_pred             ccccccccceeccc-eeeeeceEEEEeecceeeEEEEEEEEEE-cCCCceeEEecCCCCCCCCceeEEEeecccccccCC
Q psy14674        399 LGLRDRDCMYTKLY-TIVHAPFTLQVRRNDYVQALVTFFSVEF-SKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKG  476 (519)
Q Consensus       399 ~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~g~~~wFd~~F-~~~~~~v~lsT~P~~~~THWkQt~~~l~~~~~v~~g  476 (519)
                      ..+..+|+++.+++ ..|+.+|.++++++|.+|||++|||+.| ++++.+|.|||||.++.|||||++|+|++|+.|++|
T Consensus       226 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wfd~~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g  305 (340)
T 2fyt_A          226 CGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAG  305 (340)
T ss_dssp             EEEEEEETTTCCGGGGSEEEEEEEEBCSCEEEEEEEEEEEEEECTTCSSCEEEECSTTSCCCTTCEEEEEEEEEEEECTT
T ss_pred             EEEEEEECCCCcccccceEeeEEEEEccCcEEEEEEEEEEEEeecCCCCCEEEECCCCcCCCccccEEEEeCCceEcCCC
Confidence            35556677665444 5789999999999999999999999999 667778999999999999999999999999999999


Q ss_pred             CEEEEEEEEEeCCCCCceeEEEEEEEEcCceeeeeeeeeEeeC
Q psy14674        477 EEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR  519 (519)
Q Consensus       477 ~~i~g~~~~~~~~~~~r~l~i~~~~~~~~~~~~~~~~~~~~~~  519 (519)
                      +.|+|++.++++++|+|+|+|+|+|..        .+|.|.|+
T Consensus       306 ~~i~~~~~~~~~~~~~r~~~~~~~~~~--------~~~~~~~~  340 (340)
T 2fyt_A          306 EALKGKVTVHKNKKDPRSLTVTLTLNN--------STQTYGLQ  340 (340)
T ss_dssp             CEEEEEEEEEECSSCTTSEEEEEEETT--------EEEEEEEC
T ss_pred             CEEEEEEEEEECCCCCceEEEEEEEEc--------ceEEEecC
Confidence            999999999999999999999999964        25778875

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.79  E-value=3.9e-19  Score=181.67  Aligned_cols=103  Identities=22%  Similarity=0.343  Sum_probs=86.7

Q ss_pred             ccccceeccc-e-eeeeceEEEEeecceeeEEEEEEEEEEcCCCceeEEecCCCCCCCCceeEEEeecccccccCCCEEE
Q psy14674        403 DRDCMYTKLY-T-IVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVV  480 (519)
Q Consensus       403 ~~~~~~~~~~-~-~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~~~~v~lsT~P~~~~THWkQt~~~l~~~~~v~~g~~i~  480 (519)
                      .+|+.+.+.+ + .+..+|+++++++|.+|||++|||+.|.+++..|.|||+|..+.|||||++|+|++|+.|++||.|+
T Consensus       222 ~~df~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wfd~~~~~~~~~v~lSt~P~~~~thW~q~~~~l~~p~~v~~g~~i~  301 (348)
T 2y1w_A          222 TVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLS  301 (348)
T ss_dssp             EEETTTCCGGGGSEEEEEEEEEBSSCEEEEEEEEEEEEEEECSSCEEEEECCTTSCCCTTCEEEEEEEEEEEECTTCEEE
T ss_pred             EEECCcCChHHhceeeeeEEEEEccCcEEEEEEEEEEEEEcCCCCceEEECCCCcCCCeeeeEEEeeCCceEeCCCCEEE
Confidence            3455543333 2 4788999999999999999999999999888889999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCCceeEEEEEEEEcCce
Q psy14674        481 GSFGMQPNPRNNRDLDFTVEVNFKGEL  507 (519)
Q Consensus       481 g~~~~~~~~~~~r~l~i~~~~~~~~~~  507 (519)
                      |+|.|++|+.+.|+++|+++  .++..
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~--~~~~~  326 (348)
T 2y1w_A          302 GTCLLIANKRQSYDISIVAQ--VDQTG  326 (348)
T ss_dssp             EEEEEEECTTSSEEEEEEEE--ETTTC
T ss_pred             EEEEEEECCCCCcEEEEEEE--Ecccc
Confidence            99999999877665555554  45544

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.74  E-value=5.1e-18  Score=180.11  Aligned_cols=104  Identities=22%  Similarity=0.335  Sum_probs=87.9

Q ss_pred             ccccceeccc-e-eeeeceEEEEeecceeeEEEEEEEEEEcCCCceeEEecCCCCCCCCceeEEEeecccccccCCCEEE
Q psy14674        403 DRDCMYTKLY-T-IVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVV  480 (519)
Q Consensus       403 ~~~~~~~~~~-~-~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~~~~v~lsT~P~~~~THWkQt~~~l~~~~~v~~g~~i~  480 (519)
                      .+|+.+...+ + .++.+|+++++++|.+|||++|||+.|.+++..|.|||+|..+.|||+|++|+|++|+.|++||.|+
T Consensus       330 ~~d~~~~~~~~l~~~~~~~~~~~~~~g~~hg~~~wFd~~~~~~~~~v~lST~P~~~~thW~q~~~~l~~p~~v~~g~~i~  409 (480)
T 3b3j_A          330 TVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLS  409 (480)
T ss_dssp             EEETTTCCTTTTTEEEEEEEEECSSCEEEEEEEEEEEEEEECSSCEEESSSCCSSSCCCSEEEEEEEEEEEEECTTCEEE
T ss_pred             hhhhhcCChhhhcceeeeEEEEEccCcEEEEEEEEEEEEEcCCCCceEEeCCCCcCCCeeeeEEEEeCCceEeCCCCEEE
Confidence            4555543333 2 4678999999999999999999999999887889999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCCceeEEEEEEEEcCcee
Q psy14674        481 GSFGMQPNPRNNRDLDFTVEVNFKGELC  508 (519)
Q Consensus       481 g~~~~~~~~~~~r~l~i~~~~~~~~~~~  508 (519)
                      |+|.|++|+.+.|  +|.++|.+++...
T Consensus       410 g~~~~~~~~~~~~--~v~~~~~~~~~~~  435 (480)
T 3b3j_A          410 GTCLLIANKRQSY--DISIVAQVDQTGS  435 (480)
T ss_dssp             EEEEEEECTTSSE--EEEEEEEETTTCC
T ss_pred             EEEEEEECCCCCc--EEEEEEEEccCCc
Confidence            9999999987666  5566666666543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.59  E-value=3.6e-15  Score=146.02  Aligned_cols=107  Identities=18%  Similarity=0.346  Sum_probs=90.9

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc---CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS---GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~---g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      .+.+|.+|||||||+|.++..+++.   ...+|+|||+| +|++.|+++++..+...+|+++++|+.++++    +++|+
T Consensus        67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~----~~~d~  142 (261)
T 4gek_A           67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----ENASM  142 (261)
T ss_dssp             HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC----CSEEE
T ss_pred             hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc----ccccc
Confidence            3678999999999999999999886   23489999999 6999999999999988889999999987644    46999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      |++..+.+++.. .....++++++++|||||.++..
T Consensus       143 v~~~~~l~~~~~-~~~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          143 VVLNFTLQFLEP-SERQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             EEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceeeeeeeecCc-hhHhHHHHHHHHHcCCCcEEEEE
Confidence            999887766643 34567899999999999999854

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.58  E-value=1.3e-14  Score=140.95  Aligned_cols=110  Identities=26%  Similarity=0.400  Sum_probs=95.6

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ..+.++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|++++..+++.++++++++|+.+++++.  ++||+|+
T Consensus        42 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~fD~v~  119 (257)
T 3f4k_A           42 NELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQN--EELDLIW  119 (257)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCT--TCEEEEE
T ss_pred             hcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCC--CCEEEEE
Confidence            3567888999999999999999999865599999999 699999999999999999999999998876665  8999999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +..+.+++    ....++..+.++|||||.++.....
T Consensus       120 ~~~~l~~~----~~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          120 SEGAIYNI----GFERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             EESCSCCC----CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             ecChHhhc----CHHHHHHHHHHHcCCCcEEEEEEee
Confidence            98876655    3677889999999999999876544

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.58  E-value=1.3e-14  Score=142.10  Aligned_cols=109  Identities=25%  Similarity=0.390  Sum_probs=95.7

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      .+.++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|+++++..++.++++++++|+.+++++.  ++||+|++
T Consensus        43 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD~i~~  120 (267)
T 3kkz_A           43 NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRN--EELDLIWS  120 (267)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT--TCEEEEEE
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCC--CCEEEEEE
Confidence            467889999999999999999999877799999999 699999999999999889999999998876655  89999999


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ..+.+++    ....++..+.++|||||.++.....
T Consensus       121 ~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          121 EGAIYNI----GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             SSCGGGT----CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             cCCceec----CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            8876555    3577899999999999999976554

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.55  E-value=1.5e-14  Score=140.43  Aligned_cols=112  Identities=24%  Similarity=0.354  Sum_probs=92.8

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .+.......++.+|||||||+|.++..+++.|..+|+|+|+| .+++.|+++..    ..+++++.+|+.+++++.  ++
T Consensus        35 ~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~--~~  108 (253)
T 3g5l_A           35 ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEP--DA  108 (253)
T ss_dssp             HHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCT--TC
T ss_pred             HHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCC--CC
Confidence            344445556889999999999999999999987799999999 69999998765    346999999998876655  89


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ||+|++..+.+++   .....++.++.++|||||.++.....
T Consensus       109 fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~  147 (253)
T 3g5l_A          109 YNVVLSSLALHYI---ASFDDICKKVYINLKSSGSFIFSVEH  147 (253)
T ss_dssp             EEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEEEchhhhhh---hhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            9999998875554   45778899999999999999976443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.55  E-value=2.5e-14  Score=138.90  Aligned_cols=113  Identities=16%  Similarity=0.151  Sum_probs=94.0

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      +.....+.++.+|||||||+|.++..+++....+|+|+|+| .|++.|+++++.+++.++++++++|+.+++. .  ++|
T Consensus        28 l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~--~~f  104 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-N--EKC  104 (256)
T ss_dssp             HHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-S--SCE
T ss_pred             HHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-C--CCC
Confidence            33445677899999999999999998888633499999999 6999999999999998889999999988654 3  899


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      |+|++..+.+++.   ....++.++.++|||||.++....
T Consensus       105 D~V~~~~~~~~~~---~~~~~l~~~~r~LkpgG~l~~~~~  141 (256)
T 1nkv_A          105 DVAACVGATWIAG---GFAGAEELLAQSLKPGGIMLIGEP  141 (256)
T ss_dssp             EEEEEESCGGGTS---SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             CEEEECCChHhcC---CHHHHHHHHHHHcCCCeEEEEecC
Confidence            9999977655443   467789999999999999986543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.55  E-value=3.1e-14  Score=139.67  Aligned_cols=117  Identities=21%  Similarity=0.190  Sum_probs=98.0

Q ss_pred             HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674         67 RNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI  145 (519)
Q Consensus        67 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  145 (519)
                      .+.++....+.++.+|||||||+|.++..+++....+|+|+|+| .+++.|++++...++.++++++.+|+.+++++.  
T Consensus        50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--  127 (273)
T 3bus_A           50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED--  127 (273)
T ss_dssp             HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT--
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC--
Confidence            34555556678899999999999999999988644599999999 699999999999999888999999999876665  


Q ss_pred             ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      ++||+|++..+.+++   .....++.++.++|||||.++....
T Consensus       128 ~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~  167 (273)
T 3bus_A          128 ASFDAVWALESLHHM---PDRGRALREMARVLRPGGTVAIADF  167 (273)
T ss_dssp             TCEEEEEEESCTTTS---SCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCccEEEEechhhhC---CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            799999998775544   3457889999999999999986543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.54  E-value=4.2e-14  Score=141.17  Aligned_cols=116  Identities=22%  Similarity=0.196  Sum_probs=98.5

Q ss_pred             HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674         68 NSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI  145 (519)
Q Consensus        68 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  145 (519)
                      +.++....+.++.+|||||||+|.++..+++. | .+|+|+|+| ++++.|++++..+++.++++++.+|+.++  +   
T Consensus        62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~---  135 (302)
T 3hem_A           62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--D---  135 (302)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--C---
T ss_pred             HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--C---
Confidence            34555667788999999999999999999988 7 599999999 69999999999999998899999999875  3   


Q ss_pred             ceeeEEEEeccccccccc------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        146 QKVDIIISEWMGYCLFYE------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++||+|++..+.+++...      ..+..++..+.++|||||.++.....
T Consensus       136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  185 (302)
T 3hem_A          136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  185 (302)
T ss_dssp             CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred             CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            899999998876666322      45678899999999999999965544

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.54  E-value=1e-14  Score=135.38  Aligned_cols=108  Identities=23%  Similarity=0.301  Sum_probs=89.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~Ivs  153 (519)
                      .++.+|||+|||+|.++..+++.|+.+|+|+|+| +|++.|+++++.+++ ++++++++|+.++.  ++.  ++||+|++
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~--~~fD~i~~  119 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTT--SPVDLVLA  119 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCS--SCCSEEEE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccC--CCccEEEE
Confidence            5788999999999999998888888899999999 699999999999988 56999999998763  223  78999999


Q ss_pred             eccccccccchhHHHHHHHHhc--ccCcCeEEEccCCc
Q psy14674        154 EWMGYCLFYESMLDTVLYARDK--WLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r--~LkpgG~lip~~~~  189 (519)
                      +...+..  ...+..++..+.+  +|+|||.++.+...
T Consensus       120 ~~p~~~~--~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          120 DPPYNVD--SADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             CCCTTSC--HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             CCCCCcc--hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            8763321  2456777888877  99999999976554

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.54  E-value=3.8e-14  Score=142.22  Aligned_cols=112  Identities=15%  Similarity=0.194  Sum_probs=96.0

Q ss_pred             HHHhcCC-CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674         69 SMYHNKH-LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI  145 (519)
Q Consensus        69 ai~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  145 (519)
                      .++.... +.++.+|||||||+|.++..+++. |. +|+|+|+| .+++.|+++++.+++.++++++.+|+.+++++.  
T Consensus       107 ~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--  183 (312)
T 3vc1_A          107 FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK--  183 (312)
T ss_dssp             HHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT--
T ss_pred             HHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC--
Confidence            3444444 778899999999999999999987 65 99999999 699999999999999888999999999876665  


Q ss_pred             ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ++||+|++..+.+++.    ...++.++.++|||||.++...
T Consensus       184 ~~fD~V~~~~~l~~~~----~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          184 GAVTASWNNESTMYVD----LHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             TCEEEEEEESCGGGSC----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCEeEEEECCchhhCC----HHHHHHHHHHHcCCCcEEEEEE
Confidence            8999999987766552    7788999999999999998543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.54  E-value=2.2e-14  Score=135.70  Aligned_cols=116  Identities=16%  Similarity=0.113  Sum_probs=95.0

Q ss_pred             HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC
Q psy14674         65 TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF  143 (519)
Q Consensus        65 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~  143 (519)
                      .+...+.......++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++....+   +++++++|+.++. +.
T Consensus        38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~-~~  112 (216)
T 3ofk_A           38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS-TA  112 (216)
T ss_dssp             HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC-CS
T ss_pred             HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC-CC
Confidence            3444444345566788999999999999999999875 99999999 69999999876643   5999999998876 33


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                        ++||+|++..+.+++.....+..++..+.++|||||.++...
T Consensus       113 --~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          113 --ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             --CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence              899999998887777665566788999999999999998654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.53  E-value=2.2e-14  Score=135.88  Aligned_cols=109  Identities=19%  Similarity=0.240  Sum_probs=90.7

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCC----cEEEEEceeeEeecCCCCceeeE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSD----VVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~----~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      .++.+|||||||+|.++..+++.+ ..+|+|+|+| .+++.|++++..+++.+    +++++++|+...+.+.  ++||+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD~  105 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRF--HGYDA  105 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGG--CSCSE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccC--CCcCE
Confidence            467899999999999999999874 4699999999 69999999998888764    7999999987655444  78999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      |++..+.+++. ...+..+++.+.++|||||.++....
T Consensus       106 v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A          106 ATVIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             EEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             EeeHHHHHcCC-HHHHHHHHHHHHHHcCCCEEEEEccC
Confidence            99988766663 33567889999999999998875443

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.53  E-value=7.9e-14  Score=135.07  Aligned_cols=115  Identities=23%  Similarity=0.400  Sum_probs=91.9

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .++......++.+|||+|||+|.++..+++.|. +|+|+|+| +|++.|+++...++.  +++++++|+.+++++   ++
T Consensus        32 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~---~~  105 (252)
T 1wzn_A           32 EIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK---NE  105 (252)
T ss_dssp             HHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC---SC
T ss_pred             HHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccC---CC
Confidence            333444456778999999999999999999876 99999999 699999999988776  489999999886655   68


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ||+|++...............++..+.++|+|||.++.+...
T Consensus       106 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            999998543222334456788899999999999999866443

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.53  E-value=3.9e-14  Score=138.04  Aligned_cols=105  Identities=17%  Similarity=0.245  Sum_probs=90.0

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ...++.+|||||||+|.++..+++.+. +|+|+|+| +|++.|+++++.+++. +++++.+|++++++++  ++||+|++
T Consensus        34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~--~~fD~V~~  109 (260)
T 1vl5_A           34 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPFTD--ERFHIVTC  109 (260)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCSCT--TCEEEEEE
T ss_pred             CCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCCCCC--CCEEEEEE
Confidence            456789999999999999999998865 99999999 6999999999988876 4999999999877665  89999999


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ..+.+++   .....++.++.++|||||.++..
T Consensus       110 ~~~l~~~---~d~~~~l~~~~r~LkpgG~l~~~  139 (260)
T 1vl5_A          110 RIAAHHF---PNPASFVSEAYRVLKKGGQLLLV  139 (260)
T ss_dssp             ESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhHhc---CCHHHHHHHHHHHcCCCCEEEEE
Confidence            8775554   34678899999999999999864

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.53  E-value=2.8e-14  Score=134.54  Aligned_cols=112  Identities=22%  Similarity=0.330  Sum_probs=93.5

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      +.......++ +|||+|||+|.++..+++.+..+|+|+|+| .+++.|+++++.+++.++++++++|+.+++++.  ++|
T Consensus        36 ~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~  112 (219)
T 3dlc_A           36 IINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED--NYA  112 (219)
T ss_dssp             HHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT--TCE
T ss_pred             HHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc--ccc
Confidence            3333344445 999999999999999998744599999999 699999999999999888999999999877665  899


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      |+|++..+.+++   .....++.++.++|||||.++...
T Consensus       113 D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          113 DLIVSRGSVFFW---EDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             EEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEECchHhhc---cCHHHHHHHHHHhCCCCCEEEEEe
Confidence            999998775554   456788999999999999988653

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.51  E-value=4.5e-14  Score=140.03  Aligned_cols=112  Identities=18%  Similarity=0.163  Sum_probs=94.5

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec-CCCCceeeEEEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL-PFGIQKVDIIIS  153 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~D~Ivs  153 (519)
                      +.++.+|||||||+|.++..+++.|..+|+|+|+| .+++.|+++....++..+++++++|+.+.++ +.  ++||+|++
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~fD~v~~  139 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLG--KEFDVISS  139 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCS--SCEEEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCC--CCcCEEEE
Confidence            46788999999999999998888887799999999 6999999999998887789999999987765 33  78999999


Q ss_pred             ecccccc-ccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        154 EWMGYCL-FYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l-~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ..+.++. .+......++..+.++|||||.++.....
T Consensus       140 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          140 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            8765442 34566788999999999999999965543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.51  E-value=3.5e-14  Score=134.67  Aligned_cols=108  Identities=19%  Similarity=0.271  Sum_probs=89.5

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCC----cEEEEEceeeEeecCCCCceeeE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSD----VVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~----~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      .++.+|||||||+|.++..+++.+ ..+|+|+|+| .+++.|++++..+++.+    +++++++|+...+.+.  ++||+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD~  105 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRF--SGYDA  105 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGG--TTCSE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccccc--CCCCE
Confidence            467899999999999999999875 3699999999 69999999998887764    7999999997655544  78999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      |++..+.+++. ...+..+++.+.++|||||.++...
T Consensus       106 V~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A          106 ATVIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             EEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             EEEHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEcc
Confidence            99988766663 2345788999999999999777443

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=99.51  E-value=1.3e-14  Score=156.66  Aligned_cols=74  Identities=19%  Similarity=0.331  Sum_probs=67.3

Q ss_pred             eeeeeceEEEEeecceeeEEEEEEEEEEcCCCceeEEecCCCC---CCCCceeEEEeecccccccCCCEEEEEEEEEeCC
Q psy14674        413 TIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA---HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNP  489 (519)
Q Consensus       413 ~~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~~~~v~lsT~P~~---~~THWkQt~~~l~~~~~v~~g~~i~g~~~~~~~~  489 (519)
                      ..+..+|+|+++++|.+|||++|||+.|.++   |.|||+|..   +.|||+|++|+|++|+.|++||.|+|+|..+.+.
T Consensus       532 ~~~~~~~~f~i~~~g~vhGf~~wFD~~f~~~---V~LST~P~~~s~~~THW~Q~vfpL~~Pl~V~~Gd~I~~~~~R~~d~  608 (637)
T 4gqb_A          532 NNRYCTLEFPVEVNTVLHGFAGYFETVLYQD---ITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNS  608 (637)
T ss_dssp             CCEEEEEEEECCSCEEEEEEEEEEEEEEETT---EEEECSGGGCCTTCCSCCCEEEEEEEEEEECTTCEEEEEEEEEECS
T ss_pred             ceEEEEEEEEecCCcEEEEEEEEEEEEeeCC---eEEECCCCCCCCCCCcccCeEEEeCCCeEECCCCEEEEEEEEEeCC
Confidence            4688899999999999999999999999864   999999974   4699999999999999999999999999987763

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.51  E-value=4e-14  Score=130.61  Aligned_cols=109  Identities=14%  Similarity=0.085  Sum_probs=85.9

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCceeeEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKVDII  151 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~D~I  151 (519)
                      ..+.++.+|||+|||+|.++..+++. ..+|+|+|+| +|++.|+++++.+++ +++++++++..++. .+.  ++||+|
T Consensus        18 ~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~--~~fD~v   93 (185)
T 3mti_A           18 EVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVR--EPIRAA   93 (185)
T ss_dssp             TTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCC--SCEEEE
T ss_pred             HhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhcc--CCcCEE
Confidence            45678899999999999999999998 5599999999 699999999999888 56999998887653 233  789999


Q ss_pred             EEeccccccc-------cchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        152 ISEWMGYCLF-------YESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       152 vs~~~~~~l~-------~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +++.. +...       .......++.++.++|||||.++...
T Consensus        94 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  135 (185)
T 3mti_A           94 IFNLG-YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI  135 (185)
T ss_dssp             EEEEC------------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeCC-CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence            98742 2111       22344567788899999999998543

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.51  E-value=1.4e-14  Score=136.20  Aligned_cols=107  Identities=16%  Similarity=0.082  Sum_probs=84.1

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCC-----------CCCcEEEEEceeeEeecC
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNN-----------LSDVVTILKGKVEEVELP  142 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~-----------~~~~i~~~~~d~~~~~~~  142 (519)
                      .+.++.+|||+|||+|..+..+++.|. +|+|||+| .|++.|+++.....           ...+++++++|+.+++.+
T Consensus        19 ~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~   97 (203)
T 1pjz_A           19 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   97 (203)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             ccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence            456788999999999999999999887 99999999 69999998764310           124589999999876543


Q ss_pred             CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      . .++||+|++..+.+++. ......++.++.++|||||.++
T Consensus        98 ~-~~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~  137 (203)
T 1pjz_A           98 D-IGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGL  137 (203)
T ss_dssp             H-HHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEE
T ss_pred             c-CCCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEE
Confidence            1 15899999977655554 3456678999999999999844

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.51  E-value=2e-14  Score=131.64  Aligned_cols=108  Identities=17%  Similarity=0.186  Sum_probs=87.5

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-ecCCCCceeeEEEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-ELPFGIQKVDIIIS  153 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~D~Ivs  153 (519)
                      ..++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.|+++++.+++.++++++.+|+.+. +...  ++||+|++
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~fD~i~~  106 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT--GRFDLVFL  106 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC--SCEEEEEE
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc--CCCCEEEE
Confidence            56788999999999999999998887799999999 69999999999999887899999999874 2222  67999999


Q ss_pred             eccccccccchhHHHHHHHHh--cccCcCeEEEccCCc
Q psy14674        154 EWMGYCLFYESMLDTVLYARD--KWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~--r~LkpgG~lip~~~~  189 (519)
                      +...+.    .....++..+.  ++|+|||.++.....
T Consensus       107 ~~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A          107 DPPYAK----ETIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             CCSSHH----HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCCCCc----chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            865321    23445555555  999999999876554

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.50  E-value=1.2e-14  Score=144.27  Aligned_cols=121  Identities=21%  Similarity=0.196  Sum_probs=93.1

Q ss_pred             HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCC---CcEEEEEceeeEee-
Q psy14674         66 YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS---DVVTILKGKVEEVE-  140 (519)
Q Consensus        66 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~---~~i~~~~~d~~~~~-  140 (519)
                      +.+.+.......++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|+++....+..   .++.+..+|+.+++ 
T Consensus        45 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~  123 (293)
T 3thr_A           45 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  123 (293)
T ss_dssp             HHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc
Confidence            333443333345778999999999999999999977 99999999 6999999887554432   34788999988765 


Q ss_pred             --cCCCCceeeEEEEe-cccccccc----chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        141 --LPFGIQKVDIIISE-WMGYCLFY----ESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       141 --~~~~~~~~D~Ivs~-~~~~~l~~----e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                        ++.  ++||+|+|. .+.+++..    ......++.++.++|||||.++....+
T Consensus       124 ~~~~~--~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          124 DVPAG--DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             HSCCT--TCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ccccC--CCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence              454  799999996 45444544    345788999999999999999966544

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.50  E-value=6.5e-14  Score=139.22  Aligned_cols=108  Identities=19%  Similarity=0.144  Sum_probs=93.6

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      .+.++.+|||||||+|.++..+++. |. +|+|+|+| .+++.|+++.+..++.++++++.+|+.+++++.  ++||+|+
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~fD~v~  155 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED--NSYDFIW  155 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT--TCEEEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCC--CCEeEEE
Confidence            6678899999999999999999887 65 99999999 699999999999998888999999999876665  7999999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      +..+.+++.   ....++.++.++|||||.++....
T Consensus       156 ~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          156 SQDAFLHSP---DKLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             EESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ecchhhhcC---CHHHHHHHHHHHcCCCeEEEEEEe
Confidence            987755543   367889999999999999986543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.50  E-value=9.7e-14  Score=130.70  Aligned_cols=105  Identities=18%  Similarity=0.210  Sum_probs=87.6

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ..+.++.+|||+|||+|.++..+++. ..+|+|+|+| ++++.|+++++.+++.++++++++|+.+.....  ++||+|+
T Consensus        51 l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~--~~~D~v~  127 (204)
T 3njr_A           51 LAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL--PLPEAVF  127 (204)
T ss_dssp             HCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS--CCCSEEE
T ss_pred             cCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC--CCCCEEE
Confidence            45678899999999999999999998 5599999999 699999999999999867999999998732222  5799999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +...   +    ..+ ++..+.++|||||.++....+
T Consensus       128 ~~~~---~----~~~-~l~~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          128 IGGG---G----SQA-LYDRLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             ECSC---C----CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred             ECCc---c----cHH-HHHHHHHhcCCCcEEEEEecC
Confidence            8652   2    244 788889999999999976655

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.50  E-value=4e-14  Score=137.78  Aligned_cols=107  Identities=17%  Similarity=0.024  Sum_probs=84.7

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH----------CC------CCCcEEEEEceeeE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDK----------NN------LSDVVTILKGKVEE  138 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~----------~~------~~~~i~~~~~d~~~  138 (519)
                      ..++.+|||+|||+|..+..+|+.|. +|+|||+| .|++.|+++...          ++      ...+++++++|+.+
T Consensus        66 ~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           66 GQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            35778999999999999999999987 99999999 699999876531          00      12469999999988


Q ss_pred             eecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        139 VELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       139 ~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ++.+. .++||+|++..+.+++. ......++..+.++|||||.++.
T Consensus       145 l~~~~-~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l  189 (252)
T 2gb4_A          145 LPRAN-IGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLV  189 (252)
T ss_dssp             GGGGC-CCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCccc-CCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEE
Confidence            75431 16899999976655554 34567789999999999999863

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.49  E-value=4.8e-14  Score=132.40  Aligned_cols=108  Identities=16%  Similarity=0.169  Sum_probs=87.5

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCC-CcEEEEEceeeEeecCCCCce-eeEEEEe
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS-DVVTILKGKVEEVELPFGIQK-VDIIISE  154 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~-~D~Ivs~  154 (519)
                      ++.+|||+|||+|.++..+++.++.+|+|+|+| +|++.|+++++.+++. ++++++++|+.++......++ ||+|+++
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            678999999999999998887787799999999 6999999999999985 569999999987532211268 9999998


Q ss_pred             ccccccccchhHHHHHHHH--hcccCcCeEEEccCCc
Q psy14674        155 WMGYCLFYESMLDTVLYAR--DKWLATNGLLFPDKAS  189 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~--~r~LkpgG~lip~~~~  189 (519)
                      ...+    ......++..+  .++|+|||.++.....
T Consensus       133 ~~~~----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          133 PPFH----FNLAEQAISLLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             CCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             CCCC----CccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            7622    34456677777  6789999999876655

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.49  E-value=2.1e-13  Score=129.65  Aligned_cols=119  Identities=20%  Similarity=0.271  Sum_probs=93.7

Q ss_pred             HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec
Q psy14674         63 TMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL  141 (519)
Q Consensus        63 ~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~  141 (519)
                      ...+.+.+...  +.++.+|||+|||+|.++..+++.+. +|+|+|+| .+++.|+++.+.++  .+++++.+|+.++++
T Consensus        25 ~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~   99 (227)
T 1ve3_A           25 IETLEPLLMKY--MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSF   99 (227)
T ss_dssp             HHHHHHHHHHS--CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCS
T ss_pred             HHHHHHHHHHh--cCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCC
Confidence            34444455433  34588999999999999999999877 99999999 69999999998876  458999999988665


Q ss_pred             CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.  ++||+|++..+.++ .+......++..+.++|+|||.++.....
T Consensus       100 ~~--~~~D~v~~~~~~~~-~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          100 ED--KTFDYVIFIDSIVH-FEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             CT--TCEEEEEEESCGGG-CCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CC--CcEEEEEEcCchHh-CCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            54  78999999876332 23345678899999999999999865443

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.49  E-value=1.9e-13  Score=135.15  Aligned_cols=105  Identities=23%  Similarity=0.215  Sum_probs=89.9

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCceeeEEEEec
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKVDIIISEW  155 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~D~Ivs~~  155 (519)
                      ++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|++++...++..+++++++|+.++. ++.  ++||+|++..
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~fD~v~~~~  144 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE--TPVDLILFHA  144 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS--SCEEEEEEES
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC--CCceEEEECc
Confidence            478999999999999999999866 99999999 699999999999998778999999998875 444  8999999987


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      +.+++   .....++.++.++|||||.++....
T Consensus       145 ~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          145 VLEWV---ADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             CGGGC---SCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhhcc---cCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            75554   3457789999999999999986544

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.48  E-value=2e-13  Score=126.90  Aligned_cols=105  Identities=18%  Similarity=0.249  Sum_probs=88.9

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ...++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|++++..+++.+ ++++.+|+.++++ .  ++||+|++
T Consensus        29 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~-~--~~~D~v~~  103 (199)
T 2xvm_A           29 KVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLTF-D--RQYDFILS  103 (199)
T ss_dssp             TTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECCGGGCCC-C--CCEEEEEE
T ss_pred             hccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCC-cEEEEcchhhCCC-C--CCceEEEE
Confidence            345678999999999999999999866 99999999 69999999998888754 9999999988655 3  89999999


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ..+.+++. ......++..+.++|||||.++.
T Consensus       104 ~~~l~~~~-~~~~~~~l~~~~~~L~~gG~l~~  134 (199)
T 2xvm_A          104 TVVLMFLE-AKTIPGLIANMQRCTKPGGYNLI  134 (199)
T ss_dssp             ESCGGGSC-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             cchhhhCC-HHHHHHHHHHHHHhcCCCeEEEE
Confidence            88766554 33577889999999999999764

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.48  E-value=2.1e-14  Score=140.62  Aligned_cols=113  Identities=19%  Similarity=0.178  Sum_probs=86.6

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC----------------------------
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL----------------------------  125 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~----------------------------  125 (519)
                      ...++.+|||||||+|.++..++..|+.+|+|+|+| .|++.|+++++.+..                            
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            456788999999999999888888888789999999 699999988765421                            


Q ss_pred             CCcEE-EEEceeeEe-ecC-CCCceeeEEEEecccccc-ccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        126 SDVVT-ILKGKVEEV-ELP-FGIQKVDIIISEWMGYCL-FYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       126 ~~~i~-~~~~d~~~~-~~~-~~~~~~D~Ivs~~~~~~l-~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ..++. ++++|+.+. +++ ...++||+|++..+.+++ .....+..++.++.++|||||.++...
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            11244 889998873 221 112689999998886654 233456788999999999999999763

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.48  E-value=9.7e-14  Score=135.53  Aligned_cols=112  Identities=18%  Similarity=0.279  Sum_probs=90.4

Q ss_pred             CCCC-CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         74 KHLF-KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        74 ~~~~-~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      .... ++.+|||+|||+|.+++.+++.+..+|+|+|++ .+++.|+++++.+++.++++++++|+.++......++||+|
T Consensus        44 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~I  123 (259)
T 3lpm_A           44 SYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIV  123 (259)
T ss_dssp             CCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEE
T ss_pred             hcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEE
Confidence            3456 789999999999999999999876699999999 69999999999999998999999999886421112799999


Q ss_pred             EEecccccc-----cc------------chhHHHHHHHHhcccCcCeEEEc
Q psy14674        152 ISEWMGYCL-----FY------------ESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       152 vs~~~~~~l-----~~------------e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ++++..+..     ..            ...+..++..+.++|||||.++.
T Consensus       124 i~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  174 (259)
T 3lpm_A          124 TCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF  174 (259)
T ss_dssp             EECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence            998753222     00            12356788999999999999885

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.48  E-value=1.3e-13  Score=132.86  Aligned_cols=107  Identities=21%  Similarity=0.315  Sum_probs=91.4

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ..+.++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|++++..+++. +++++.+|+++++++.  ++||+|+
T Consensus        17 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~--~~fD~v~   92 (239)
T 1xxl_A           17 AECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFPD--DSFDIIT   92 (239)
T ss_dssp             HTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSCT--TCEEEEE
T ss_pred             hCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCCCC--CcEEEEE
Confidence            4567899999999999999999998875 99999999 6999999999888876 4999999998876665  7999999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +..+.+++   .....++.++.++|||||.++...
T Consensus        93 ~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           93 CRYAAHHF---SDVRKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             EESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCchhhc---cCHHHHHHHHHHHcCCCcEEEEEE
Confidence            98765544   346788999999999999998643

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.48  E-value=1.3e-13  Score=133.52  Aligned_cols=114  Identities=19%  Similarity=0.197  Sum_probs=93.5

Q ss_pred             HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         68 NSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        68 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      ..++......++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|+++...+   .+++++++|+.+++++.  +
T Consensus        83 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~--~  157 (254)
T 1xtp_A           83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPP--N  157 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCS--S
T ss_pred             HHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCC--C
Confidence            4444555566789999999999999999988877789999999 6999999987654   46999999998876655  7


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +||+|++..+.+++.. ..+..++..+.++|||||.++...
T Consensus       158 ~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~  197 (254)
T 1xtp_A          158 TYDLIVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             CEEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CeEEEEEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEe
Confidence            9999999887665533 457788999999999999998654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.47  E-value=1.8e-13  Score=128.42  Aligned_cols=111  Identities=19%  Similarity=0.262  Sum_probs=90.6

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      ++....+.++.+|||+|||+|.++..+++.+ ..+|+|+|+| ++++.|+++++.+++ ++++++.+|+.+.....  ++
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~--~~  108 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDL--PD  108 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTS--CC
T ss_pred             HHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcC--CC
Confidence            3344567789999999999999999999885 5699999999 699999999999888 56999999986543222  67


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ||+|++....+      ....++.++.++|||||.++.....
T Consensus       109 ~D~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          109 PDRVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             CSEEEESCCTT------CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             CCEEEECCCCc------CHHHHHHHHHHhcCCCeEEEEEecc
Confidence            99999876532      4667889999999999999976444

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.47  E-value=5.3e-14  Score=140.75  Aligned_cols=119  Identities=14%  Similarity=0.216  Sum_probs=97.7

Q ss_pred             HHHHHHhcCCCCCCCEEEEECCcccHHHHHHH--HcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC
Q psy14674         66 YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAA--KSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP  142 (519)
Q Consensus        66 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la--~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~  142 (519)
                      +.+.+.  ..+.++.+|||||||+|.++..++  ..+..+|+|+|+| .+++.|++++..+++.++++++++|+.+++++
T Consensus       108 ~~~~l~--~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  185 (305)
T 3ocj_A          108 FRRALQ--RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR  185 (305)
T ss_dssp             HHHHHH--HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC
T ss_pred             HHHHHH--hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc
Confidence            444442  345788999999999999999885  3456699999999 69999999999999988999999999987655


Q ss_pred             CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                         ++||+|++..+.+++........++..+.++|||||.++.....
T Consensus       186 ---~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  229 (305)
T 3ocj_A          186 ---EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLT  229 (305)
T ss_dssp             ---SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ---CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence               79999999887666655555566899999999999999975543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.47  E-value=4.5e-14  Score=136.11  Aligned_cols=109  Identities=19%  Similarity=0.187  Sum_probs=87.9

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .+|.+|||||||+|..+..+++.+..+|+|||+| .|++.|+++.+..+.  ++.++.++++++..+..+++||.|+.+.
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~FD~i~~D~  136 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYDT  136 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhcccccccCCceEEEee
Confidence            5788999999999999999998865699999999 699999999887664  4889999988763333338899999866


Q ss_pred             cc--cccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        156 MG--YCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       156 ~~--~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +.  ..+.+......+++++.|+|||||++++..
T Consensus       137 ~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             eecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            42  333444567888999999999999998654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.47  E-value=1.4e-13  Score=131.78  Aligned_cols=106  Identities=21%  Similarity=0.241  Sum_probs=87.5

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ..++.+|||||||+|.++..+++.. ..+|+|+|+| .+++.|++++...+   +++++++|+.+++.+   ++||+|++
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~---~~fD~v~~  115 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFE---EKYDMVVS  115 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCC---SCEEEEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCC---CCceEEEE
Confidence            5678999999999999999998873 5599999999 69999999876654   699999999887655   78999999


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      ..+.+++.. .....+++++.++|||||.++....
T Consensus       116 ~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~  149 (234)
T 3dtn_A          116 ALSIHHLED-EDKKELYKRSYSILKESGIFINADL  149 (234)
T ss_dssp             ESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eCccccCCH-HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            887666632 3345688999999999999985543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.47  E-value=1.6e-13  Score=137.24  Aligned_cols=111  Identities=17%  Similarity=0.133  Sum_probs=82.9

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCC-----cEEEEEcee------eEee--cC
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSD-----VVTILKGKV------EEVE--LP  142 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~-----~i~~~~~d~------~~~~--~~  142 (519)
                      .++.+|||||||+|..+..+++.+..+|+|+|+| +|++.|+++....+...     ++++.++++      +++.  ++
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            3578999999999976665556665699999999 69999999987655431     267878877      3332  23


Q ss_pred             CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .  ++||+|+|..+.|++........++.++.++|||||.++.....
T Consensus       127 ~--~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~  171 (302)
T 2vdw_A          127 F--GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD  171 (302)
T ss_dssp             S--SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             C--CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            3  79999999776655433234578999999999999999966544

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.47  E-value=9.2e-14  Score=131.55  Aligned_cols=108  Identities=28%  Similarity=0.293  Sum_probs=91.8

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSG--AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ..+.++.+|||+|||+|.++..+++.+  ..+|+|+|+| .+++.|++++..+++. +++++.+|+.+++++.  ++||+
T Consensus        33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~--~~fD~  109 (219)
T 3dh0_A           33 FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPD--NTVDF  109 (219)
T ss_dssp             HTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCS--SCEEE
T ss_pred             hCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCC--CCeeE
Confidence            356778899999999999999998874  4599999999 6999999999988876 5999999999876665  78999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      |++..+.+++   .....++..+.++|||||.++...
T Consensus       110 v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~  143 (219)
T 3dh0_A          110 IFMAFTFHEL---SEPLKFLEELKRVAKPFAYLAIID  143 (219)
T ss_dssp             EEEESCGGGC---SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeehhhhhc---CCHHHHHHHHHHHhCCCeEEEEEE
Confidence            9998775554   346788999999999999998654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.47  E-value=6.5e-14  Score=134.68  Aligned_cols=107  Identities=21%  Similarity=0.245  Sum_probs=85.6

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Ivs  153 (519)
                      .++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|+++.+.++  .+++++++|+.++  ++++  ++||+|++
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~--~~fD~V~~  134 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPD--GHFDGILY  134 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCT--TCEEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCC--CceEEEEE
Confidence            4678999999999999999988776699999999 69999999887766  4699999999987  5555  79999999


Q ss_pred             e-ccc-cccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        154 E-WMG-YCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       154 ~-~~~-~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      + ... ....+....+.++.++.++|||||+++...
T Consensus       135 d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          135 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             CCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            3 221 111123345577899999999999998544

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.46  E-value=1.6e-13  Score=130.99  Aligned_cols=109  Identities=17%  Similarity=0.233  Sum_probs=92.4

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC----CCcEEEEEceeeEeecCCCCceeeE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL----SDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      +.++.+|||+|||+|.++..+++.+. +|+|+|+| .+++.|++++..+++    .++++++.+|+.+++++.  ++||+
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~  104 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHD--SSFDF  104 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCT--TCEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCC--CceeE
Confidence            35788999999999999999999866 99999999 699999999888776    346899999999876655  89999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      |++..+.+++........++..+.++|||||.++...
T Consensus       105 v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          105 AVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             EEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            9998876666555555588999999999999998654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.46  E-value=1.1e-13  Score=127.59  Aligned_cols=110  Identities=16%  Similarity=0.173  Sum_probs=86.9

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--CCCCceeeEEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--PFGIQKVDIII  152 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~~~D~Iv  152 (519)
                      ..++.+|||+|||+|.++..+++.+..+|+|+|++ .+++.|+++++.+++.++++++++|+.+...  +...++||+|+
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~  121 (187)
T 2fhp_A           42 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL  121 (187)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence            45788999999999999998888887799999999 6999999999999887789999999987421  10127899999


Q ss_pred             EeccccccccchhHHHHHHHH--hcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYESMLDTVLYAR--DKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~--~r~LkpgG~lip~~~~  189 (519)
                      ++...+    ......++..+  .++|+|||.++.....
T Consensus       122 ~~~~~~----~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          122 LDPPYA----KQEIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             ECCCGG----GCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             ECCCCC----chhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            987622    12234445555  7899999999876554

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=99.46  E-value=1.2e-13  Score=148.64  Aligned_cols=97  Identities=14%  Similarity=0.208  Sum_probs=78.8

Q ss_pred             cccccccceec-cceeeeeceEEEEeecceeeEEEEEEEEEEcCCCceeEEecCCCCC---CCCceeEEEeecccccccC
Q psy14674        400 GLRDRDCMYTK-LYTIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAH---YTHWKQTVFYLNEHLTVKK  475 (519)
Q Consensus       400 ~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~~~~v~lsT~P~~~---~THWkQt~~~l~~~~~v~~  475 (519)
                      .+-++|..+.+ .+.++.++|+|+++++|.+|||++|||+.|.+   .|.|||+|..+   .|||+|++|+|++|+.|++
T Consensus       612 ~vftFdhp~~~~~d~~r~~~~~F~~~r~g~iHGfagwFDi~Lyk---~V~LST~P~t~s~~mThWfQtfFPL~ePL~V~~  688 (745)
T 3ua3_A          612 PVFTFEHPNFMNSSNERSDSIEFVMDRNADLMGFAGYFDLQLYK---TVMLSIEPSTHTPGMVSWFPAVIPLRDQLRVGE  688 (745)
T ss_dssp             EEEEEESSCTTCCCSCEEEEEEEECCSSEEEEEEEEEEEEEEET---TEEEECSSTTCCTTCCSCCCEEEEEEEEEEECT
T ss_pred             eEEEEECCCCCccccceeEEEEEEeCCCcEEEEEEEEEEEEecC---CcEEecCCCCCCCCCccceeEEEecCCceEeCC
Confidence            33445555543 23578999999999999999999999999995   49999999987   6899999999999999999


Q ss_pred             CCEEEEEEEEEeCCCCCceeEEEEEEEEc
Q psy14674        476 GEEVVGSFGMQPNPRNNRDLDFTVEVNFK  504 (519)
Q Consensus       476 g~~i~g~~~~~~~~~~~r~l~i~~~~~~~  504 (519)
                      ||.|+|+|..+.+.     ..+=.+|.++
T Consensus       689 GdeI~g~~~R~~d~-----~kVWYEW~v~  712 (745)
T 3ua3_A          689 GDRISLKIDRKVDN-----TGVWYEWHVE  712 (745)
T ss_dssp             TCEEEEEEEEEEET-----TEEEEEEEEE
T ss_pred             CCEEEEEEEEEcCC-----CCEEEEEEEE
Confidence            99999999987653     2444455443

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.46  E-value=7.2e-14  Score=134.34  Aligned_cols=107  Identities=18%  Similarity=0.209  Sum_probs=90.7

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|+++....+.  +++++++|+.+++++   ++||+|++..
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~---~~fD~v~~~~  109 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN---RKFDLITCCL  109 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS---CCEEEEEECT
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCcc---CCceEEEEcC
Confidence            4778999999999999999999875 89999999 699999999988776  589999999886655   7899999976


Q ss_pred             -cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 -MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 -~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                       +.+++........++..+.++|||||.++.+...
T Consensus       110 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (246)
T 1y8c_A          110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             TGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             ccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence             6666644466788899999999999999965443

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.46  E-value=2.2e-13  Score=133.91  Aligned_cols=116  Identities=23%  Similarity=0.318  Sum_probs=96.1

Q ss_pred             HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC
Q psy14674         66 YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF  143 (519)
Q Consensus        66 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~  143 (519)
                      +...+.....+.++.+|||||||+|.++..+++.+ ..+|+|+|+| .+++.|++++..+++.+ ++++.+|+.+++++.
T Consensus        25 l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~  103 (276)
T 3mgg_A           25 LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIFSLPFED  103 (276)
T ss_dssp             HHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGCCSCT
T ss_pred             HHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-cEEEEcccccCCCCC
Confidence            34445455566789999999999999999998873 5699999999 69999999999988864 999999999876665


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                        ++||+|++..+.+++   .....++..+.++|||||.++...
T Consensus       104 --~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          104 --SSFDHIFVCFVLEHL---QSPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             --TCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --CCeeEEEEechhhhc---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence              899999998875554   345678999999999999998644

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.46  E-value=3.1e-13  Score=131.46  Aligned_cols=105  Identities=18%  Similarity=0.282  Sum_probs=87.3

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ..+.++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|++++ . +...+++++.+|+++++++.  ++||+|+
T Consensus        35 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~~~~~--~~fD~v~  109 (263)
T 2yqz_A           35 HPKGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAIPLPD--ESVHGVI  109 (263)
T ss_dssp             CCSSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSCCSCT--TCEEEEE
T ss_pred             cCCCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccCCCCC--CCeeEEE
Confidence            4567789999999999999999998865 99999999 6999999987 2 33356999999998876655  7899999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +..+.+++   .....++.++.++|||||.++..
T Consensus       110 ~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          110 VVHLWHLV---PDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EESCGGGC---TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCchhhc---CCHHHHHHHHHHHCCCCcEEEEE
Confidence            98775544   34677899999999999999865

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.46  E-value=1.8e-13  Score=125.02  Aligned_cols=109  Identities=17%  Similarity=0.084  Sum_probs=86.3

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD  149 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D  149 (519)
                      ......++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|+++++.+++.+++ ++.+|+.+ .++...++||
T Consensus        19 ~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~-~~~~~~~~~D   96 (178)
T 3hm2_A           19 SALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR-AFDDVPDNPD   96 (178)
T ss_dssp             HHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG-GGGGCCSCCS
T ss_pred             HHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh-hhhccCCCCC
Confidence            3345678889999999999999998887 45699999999 6999999999999988778 88888754 3343226899


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +|++....++       ..+++.+.++|||||.++.....
T Consensus        97 ~i~~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           97 VIFIGGGLTA-------PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             EEEECC-TTC-------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             EEEECCcccH-------HHHHHHHHHhcCCCCEEEEEeec
Confidence            9998765332       45677788999999999866544

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.45  E-value=9.9e-14  Score=138.01  Aligned_cols=114  Identities=18%  Similarity=0.344  Sum_probs=87.3

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCC---------------------------
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLS---------------------------  126 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~---------------------------  126 (519)
                      ..++++|||||||+|.++..+++. +..+|+|+|+| .|++.|++++...+..                           
T Consensus        44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T 3g07_A           44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR  123 (292)
T ss_dssp             GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            347899999999999999999887 56699999999 6999999987665422                           


Q ss_pred             ------------------------------CcEEEEEceeeEee---cCCCCceeeEEEEeccccccc---cchhHHHHH
Q psy14674        127 ------------------------------DVVTILKGKVEEVE---LPFGIQKVDIIISEWMGYCLF---YESMLDTVL  170 (519)
Q Consensus       127 ------------------------------~~i~~~~~d~~~~~---~~~~~~~~D~Ivs~~~~~~l~---~e~~l~~~l  170 (519)
                                                    ++|+++++|+....   ++...++||+|+|..+.++++   ....+..++
T Consensus       124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l  203 (292)
T 3g07_A          124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF  203 (292)
T ss_dssp             ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence                                          57999999987543   111227999999988754443   445678899


Q ss_pred             HHHhcccCcCeEEEccCCc
Q psy14674        171 YARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       171 ~~~~r~LkpgG~lip~~~~  189 (519)
                      +.+.++|+|||+++.....
T Consensus       204 ~~~~~~LkpGG~lil~~~~  222 (292)
T 3g07_A          204 RRIYRHLRPGGILVLEPQP  222 (292)
T ss_dssp             HHHHHHEEEEEEEEEECCC
T ss_pred             HHHHHHhCCCcEEEEecCC
Confidence            9999999999999976544

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.45  E-value=4.1e-13  Score=132.73  Aligned_cols=117  Identities=21%  Similarity=0.237  Sum_probs=96.3

Q ss_pred             HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC
Q psy14674         66 YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF  143 (519)
Q Consensus        66 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~  143 (519)
                      ..+.++....+.++.+|||||||+|.++..+++ .|. +|+|+|+| ++++.|++++...++.++++++.+|+.++  + 
T Consensus        52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~-  127 (287)
T 1kpg_A           52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--D-  127 (287)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC--C-
T ss_pred             HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC--C-
Confidence            334555666778899999999999999998884 466 99999999 69999999999988888899999999754  4 


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                        ++||+|++..+.+++.. .....++.++.++|||||.++.....
T Consensus       128 --~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~  170 (287)
T 1kpg_A          128 --EPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTIT  170 (287)
T ss_dssp             --CCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             --CCeeEEEEeCchhhcCh-HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence              68999999877665532 35678899999999999999865543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.45  E-value=2.1e-13  Score=134.81  Aligned_cols=101  Identities=20%  Similarity=0.306  Sum_probs=88.5

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|++++..+++  +++++.+|+.++...   ++||+|++..+
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~---~~fD~i~~~~~  193 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQ---ENYDFIVSTVV  193 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCC---SCEEEEEECSS
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC--ceEEEEecccccccc---CCccEEEEccc
Confidence            788999999999999999999977 99999999 699999999999887  599999999886653   89999999887


Q ss_pred             ccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .+++. ......++..+.++|+|||.++.
T Consensus       194 ~~~~~-~~~~~~~l~~~~~~LkpgG~l~i  221 (286)
T 3m70_A          194 FMFLN-RERVPSIIKNMKEHTNVGGYNLI  221 (286)
T ss_dssp             GGGSC-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             hhhCC-HHHHHHHHHHHHHhcCCCcEEEE
Confidence            66664 34567889999999999999764

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.45  E-value=1.9e-13  Score=127.38  Aligned_cols=111  Identities=20%  Similarity=0.205  Sum_probs=89.2

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCceeeE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKVDI  150 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~D~  150 (519)
                      .+.++.+|||+|||+|.++..+++.  +..+|+|+|++ .+++.|+++++.+++.++++++++|+.++. ...  ++||+
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~fD~   96 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYID--CPVKA   96 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCC--SCEEE
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhcc--CCceE
Confidence            3567889999999999999998887  45699999999 699999999999998778999999998764 333  78999


Q ss_pred             EEEeccc------cccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        151 IISEWMG------YCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       151 Ivs~~~~------~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      |+++...      ...........++..+.++|||||.++...
T Consensus        97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            9997642      011222344568899999999999998553

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.45  E-value=5.5e-13  Score=133.98  Aligned_cols=116  Identities=20%  Similarity=0.183  Sum_probs=96.9

Q ss_pred             HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCC
Q psy14674         67 RNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFG  144 (519)
Q Consensus        67 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~  144 (519)
                      .+.++....+.++.+|||||||+|.++..+++. |. +|+|+|+| ++++.|++++...++.++++++.+|+.++  +  
T Consensus        79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~--  153 (318)
T 2fk8_A           79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--A--  153 (318)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--C--
T ss_pred             HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC--C--
Confidence            345556667788999999999999999999887 76 99999999 69999999999999888899999999764  3  


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                       ++||+|++..+.+++.. .....++.++.++|||||.++.....
T Consensus       154 -~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~  196 (318)
T 2fk8_A          154 -EPVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSSV  196 (318)
T ss_dssp             -CCCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             -CCcCEEEEeChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEEec
Confidence             68999999877655532 45778899999999999999865443

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.45  E-value=1.3e-13  Score=129.43  Aligned_cols=105  Identities=15%  Similarity=0.157  Sum_probs=84.6

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-ecCCCCceeeEEEEec
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-ELPFGIQKVDIIISEW  155 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~D~Ivs~~  155 (519)
                      ++.+|||+|||+|.+++.+++.++.+|+|+|+| .|++.|+++++.+++ ++++++++|+.+. +.+.  ++||+|+++.
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~--~~fD~V~~~~  130 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKG--TPHNIVFVDP  130 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCC--CCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcC--CCCCEEEECC
Confidence            578999999999999998888887799999999 699999999999988 5699999998874 3222  6899999987


Q ss_pred             cccccccchhHHHHHHHHh--cccCcCeEEEccCCc
Q psy14674        156 MGYCLFYESMLDTVLYARD--KWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~--r~LkpgG~lip~~~~  189 (519)
                      ..+    ......++..+.  ++|+|||.++.....
T Consensus       131 p~~----~~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          131 PFR----RGLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             SSS----TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             CCC----CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            622    233455566654  469999999876655

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.45  E-value=1.8e-13  Score=133.16  Aligned_cols=114  Identities=26%  Similarity=0.317  Sum_probs=92.9

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .++....+.++.+|||||||+|.++..+++....+|+|+|+| .+++.|+++....   .+++++++|+.+++++.  ++
T Consensus        46 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~--~~  120 (266)
T 3ujc_A           46 KILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFPE--NN  120 (266)
T ss_dssp             HHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCCT--TC
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCCC--Cc
Confidence            444556677889999999999999999998723499999999 6999999876554   56999999999876665  89


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      ||+|++..+.+++. ......++.++.++|||||.++....
T Consensus       121 fD~v~~~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          121 FDLIYSRDAILALS-LENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             EEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEeHHHHHHhcC-hHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            99999987755553 25678889999999999999986543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.44  E-value=5.4e-13  Score=131.48  Aligned_cols=105  Identities=15%  Similarity=0.238  Sum_probs=86.8

Q ss_pred             CCCCCCCEEEEECCcccHHH-HHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILS-MFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls-~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ..+.++.+|||||||+|.++ +.+|+....+|+|+|+| +|++.|+++++..|+ ++++++++|+.++  +.  ++||+|
T Consensus       118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l--~d--~~FDvV  192 (298)
T 3fpf_A          118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI--DG--LEFDVL  192 (298)
T ss_dssp             TTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG--GG--CCCSEE
T ss_pred             cCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC--CC--CCcCEE
Confidence            57789999999999998654 56677544599999999 699999999999898 7899999999875  33  789999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++...      ......+++++.+.|||||+++.....
T Consensus       193 ~~~a~------~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          193 MVAAL------AEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             EECTT------CSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             EECCC------ccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            97543      134678899999999999999965543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.43  E-value=1.1e-13  Score=135.17  Aligned_cols=95  Identities=22%  Similarity=0.177  Sum_probs=79.8

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      .+.+|||||||+|.++..+++.+. +|+|+|+| .|++.|++.       .++++++++++++++++  ++||+|++..+
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~--~sfD~v~~~~~  108 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPP--ASVDVAIAAQA  108 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCS--SCEEEEEECSC
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccC--CcccEEEEeee
Confidence            457999999999999999999875 99999999 699877642       35999999999988876  89999999776


Q ss_pred             ccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      .|++.    .+.++.++.|+|||||.++.-
T Consensus       109 ~h~~~----~~~~~~e~~rvLkpgG~l~~~  134 (257)
T 4hg2_A          109 MHWFD----LDRFWAELRRVARPGAVFAAV  134 (257)
T ss_dssp             CTTCC----HHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhHhh----HHHHHHHHHHHcCCCCEEEEE
Confidence            55542    566788999999999998743

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.43  E-value=2.8e-13  Score=130.53  Aligned_cols=107  Identities=17%  Similarity=0.154  Sum_probs=88.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|+++...++ ..+++++.+|+.++..+.  ++||+|++..
T Consensus        78 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~--~~fD~v~~~~  154 (241)
T 2ex4_A           78 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEP--DSYDVIWIQW  154 (241)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCS--SCEEEEEEES
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCC--CCEEEEEEcc
Confidence            3688999999999999999888876699999999 69999999987764 345899999998776654  6899999987


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +.+++.. ..+..++.++.++|||||.++...
T Consensus       155 ~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~  185 (241)
T 2ex4_A          155 VIGHLTD-QHLAEFLRRCKGSLRPNGIIVIKD  185 (241)
T ss_dssp             CGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEE
Confidence            7555533 235678999999999999998644

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.43  E-value=6.2e-13  Score=122.65  Aligned_cols=112  Identities=21%  Similarity=0.288  Sum_probs=91.5

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCC-cEEEEEceeeEeecCCCCceee
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSD-VVTILKGKVEEVELPFGIQKVD  149 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~D  149 (519)
                      ......++.+|||+|||+|.++..+++. ..+|+|+|++ .+++.|++++..+++.+ +++++.+|+.+. ++.  ++||
T Consensus        46 ~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~--~~~D  121 (194)
T 1dus_A           46 ENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-VKD--RKYN  121 (194)
T ss_dssp             HHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-CTT--SCEE
T ss_pred             HHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-ccc--CCce
Confidence            3345568899999999999999999988 5599999999 69999999999988875 699999998763 333  7899


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +|+++...+.  .......++..+.++|+|||.++.....
T Consensus       122 ~v~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~~~  159 (194)
T 1dus_A          122 KIITNPPIRA--GKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             EEEECCCSTT--CHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             EEEECCCccc--chhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            9999775332  1345678899999999999999866554

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.43  E-value=4.8e-13  Score=127.77  Aligned_cols=109  Identities=24%  Similarity=0.264  Sum_probs=86.6

Q ss_pred             CCCCCCCEEEEECCc-ccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-ecCCCCceeeE
Q psy14674         74 KHLFKGKIVLDIGCG-TGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-ELPFGIQKVDI  150 (519)
Q Consensus        74 ~~~~~~~~VLDiGcG-tG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~D~  150 (519)
                      ..+.++.+|||+||| +|.++..+++.+..+|+|+|+| .+++.|+++++.+++  +++++++|+..+ .++.  ++||+
T Consensus        51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~--~~fD~  126 (230)
T 3evz_A           51 TFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVE--GTFDV  126 (230)
T ss_dssp             TTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCC--SCEEE
T ss_pred             hhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhccc--CceeE
Confidence            445688999999999 9999999998844599999999 699999999999988  599999997544 3343  78999


Q ss_pred             EEEeccccccc----------------cchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        151 IISEWMGYCLF----------------YESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       151 Ivs~~~~~~l~----------------~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      |++++..+...                .......++..+.++|||||.++..
T Consensus       127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             EEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence            99986533221                1123477899999999999998853

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.43  E-value=1.6e-13  Score=136.66  Aligned_cols=108  Identities=16%  Similarity=0.191  Sum_probs=87.9

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCC--CcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS--DVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|++++...++.  .+++++++|+.+++++   ++||+|++.
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~v~~~  157 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD---KRFGTVVIS  157 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCS---CCEEEEEEC
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcC---CCcCEEEEC
Confidence            344999999999999999999875 89999999 6999999999887642  5699999999987664   899999875


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ....+.........++.++.++|||||.++.....
T Consensus       158 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  192 (299)
T 3g2m_A          158 SGSINELDEADRRGLYASVREHLEPGGKFLLSLAM  192 (299)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence            33222333345788899999999999999976555

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.43  E-value=2.8e-13  Score=130.11  Aligned_cols=107  Identities=30%  Similarity=0.396  Sum_probs=88.8

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      +.++.+|||+|||+|.++..+++.  .+|+|+|+| .+++.|+++...++  .+++++++|+.+++++   ++||+|++.
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~---~~fD~v~~~  103 (243)
T 3d2l_A           31 VEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELP---EPVDAITIL  103 (243)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCS---SCEEEEEEC
T ss_pred             cCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCC---CCcCEEEEe
Confidence            345789999999999999999887  599999999 69999999998776  3489999999876655   789999996


Q ss_pred             c-cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        155 W-MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       155 ~-~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      . +.+++........+++.+.++|+|||.++.+..+
T Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  139 (243)
T 3d2l_A          104 CDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS  139 (243)
T ss_dssp             TTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence            5 5555545566788899999999999999975543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.43  E-value=7.3e-13  Score=131.91  Aligned_cols=105  Identities=18%  Similarity=0.267  Sum_probs=87.9

Q ss_pred             CCCCEEEEECCcccHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHC-CCCCcEEEEEceeeEeecCC----CCcee
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAK--SGAARVIGIECS-NIVEYAKEIVDKN-NLSDVVTILKGKVEEVELPF----GIQKV  148 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~--~g~~~V~gvD~s-~~~~~A~~~~~~~-~~~~~i~~~~~d~~~~~~~~----~~~~~  148 (519)
                      .++.+|||||||+|.++..+++  .+..+|+|+|+| .+++.|+++++.+ +...+++++++|+++++++.    ..++|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            4789999999999999999996  356799999999 6999999999887 55567999999999876542    01589


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      |+|++..+.+++    ....++..+.++|||||.++.
T Consensus       115 D~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          115 DMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             EEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred             eEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence            999998876655    467889999999999999975

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.43  E-value=1.4e-13  Score=136.01  Aligned_cols=104  Identities=17%  Similarity=0.176  Sum_probs=87.8

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..++.+|||+|||+|.+++.+++.|+.+|+|+|+| .+++.|+++++.|++.++++++++|+.++...   ++||+|+++
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~---~~fD~Vi~~  199 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE---NIADRILMG  199 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC---SCEEEEEEC
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhccc---CCccEEEEC
Confidence            35689999999999999999999887689999999 69999999999999998899999999886542   799999997


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +...       ...++..+.++|||||.++...+.
T Consensus       200 ~p~~-------~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          200 YVVR-------THEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             CCSS-------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             Cchh-------HHHHHHHHHHHCCCCeEEEEEEee
Confidence            6521       234566677899999999866554

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.43  E-value=4e-13  Score=130.50  Aligned_cols=105  Identities=14%  Similarity=0.125  Sum_probs=87.2

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC-CCCceeeEEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP-FGIQKVDIII  152 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~D~Iv  152 (519)
                      ..++.+|||||||+|..++.++.. +..+|+|+|+| .+++.|+++++.+++.+ ++++++|++++... ...++||+|+
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~~~~~~fD~I~  156 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREAGHREAYARAV  156 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhcccccCCCceEEE
Confidence            356889999999999999998876 56799999999 69999999999999976 99999999886432 1126899999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      |..+.       .+..++..+.++|||||.++.-.+
T Consensus       157 s~a~~-------~~~~ll~~~~~~LkpgG~l~~~~g  185 (249)
T 3g89_A          157 ARAVA-------PLCVLSELLLPFLEVGGAAVAMKG  185 (249)
T ss_dssp             EESSC-------CHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             ECCcC-------CHHHHHHHHHHHcCCCeEEEEEeC
Confidence            97652       356788889999999999885444

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.42  E-value=2.6e-13  Score=130.17  Aligned_cols=105  Identities=18%  Similarity=0.138  Sum_probs=88.0

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      ++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++....+...+++++++|+.++...   ++||+|++..+
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~v~~~~~  141 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT---ELFDLIFDYVF  141 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS---SCEEEEEEESS
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC---CCeeEEEEChh
Confidence            345999999999999999988765 89999999 69999999998776667899999999886533   69999999877


Q ss_pred             ccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      .+++. ......++..+.++|||||.++...
T Consensus       142 l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~  171 (235)
T 3lcc_A          142 FCAIE-PEMRPAWAKSMYELLKPDGELITLM  171 (235)
T ss_dssp             TTTSC-GGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcCC-HHHHHHHHHHHHHHCCCCcEEEEEE
Confidence            66554 3357788999999999999998643

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.42  E-value=7.9e-13  Score=126.06  Aligned_cols=107  Identities=16%  Similarity=0.147  Sum_probs=88.1

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCC-CcEEEEEceeeEee--cCCCCceeeE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLS-DVVTILKGKVEEVE--LPFGIQKVDI  150 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~~~~D~  150 (519)
                      .++.+|||||||+|..++.++++ + ..+|+++|++ ++++.|+++++.+|+. ++++++.+|+.++.  ++.  ++||+
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~--~~fD~  132 (221)
T 3dr5_A           55 NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLAN--DSYQL  132 (221)
T ss_dssp             TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCT--TCEEE
T ss_pred             CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcC--CCcCe
Confidence            34559999999999999999885 2 5699999999 6999999999999998 78999999998752  323  78999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccc
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLF  191 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~  191 (519)
                      |+++..      ......+++.+.++|||||+++.+...+.
T Consensus       133 V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~dn~~~~  167 (221)
T 3dr5_A          133 VFGQVS------PMDLKALVDAAWPLLRRGGALVLADALLD  167 (221)
T ss_dssp             EEECCC------TTTHHHHHHHHHHHEEEEEEEEETTTTGG
T ss_pred             EEEcCc------HHHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            998653      12345678888899999999999887743

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.42  E-value=3.6e-13  Score=129.92  Aligned_cols=104  Identities=16%  Similarity=0.183  Sum_probs=86.0

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC-CCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP-FGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~D~Ivs  153 (519)
                      .++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|+++++.+++.+ ++++++|++++..+ ...++||+|++
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEeccHHHhcccccccCCccEEEE
Confidence            47889999999999999988864 45699999999 69999999999998875 99999999886542 11278999999


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      ..+       ..+..++..+.++|+|||.++....
T Consensus       148 ~~~-------~~~~~~l~~~~~~LkpgG~l~~~~g  175 (240)
T 1xdz_A          148 RAV-------ARLSVLSELCLPLVKKNGLFVALKA  175 (240)
T ss_dssp             ECC-------SCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             ecc-------CCHHHHHHHHHHhcCCCCEEEEEeC
Confidence            764       2367889999999999999986543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.41  E-value=9.5e-13  Score=130.22  Aligned_cols=108  Identities=21%  Similarity=0.293  Sum_probs=89.9

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ..+.++.+|||||||+|.++..+++. + ..+|+|+|+| .+++.|++++...+.  +++++++|+.+++.+   ++||+
T Consensus        18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~---~~fD~   92 (284)
T 3gu3_A           18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELN---DKYDI   92 (284)
T ss_dssp             SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCS---SCEEE
T ss_pred             hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCcC---CCeeE
Confidence            35678899999999999999999887 3 3599999999 699999999887665  699999999987654   79999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |++..+.+++   .....++.++.++|||||.++.....
T Consensus        93 v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           93 AICHAFLLHM---TTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             EEEESCGGGC---SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEECChhhcC---CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            9998875544   45678899999999999999854443

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.41  E-value=2.8e-13  Score=127.09  Aligned_cols=108  Identities=19%  Similarity=0.241  Sum_probs=86.4

Q ss_pred             CCCCCEEEEECCcccHHH-HHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         76 LFKGKIVLDIGCGTGILS-MFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls-~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ..++.+|||+|||+|.++ ..+++.|. +|+|+|+| .|++.|++++..++.  +++++++|+.+++++.  ++||+|++
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~--~~fD~v~~   95 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLPFKD--ESMSFVYS   95 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSCCSCT--TCEEEEEE
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhCCCCC--CceeEEEE
Confidence            456789999999999874 45555555 99999999 699999999887663  4889999998876654  78999999


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ..+.+++. ......++.++.++|||||.++....+
T Consensus        96 ~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           96 YGTIFHMR-KNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             CSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cChHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            76655543 356788899999999999999866544

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.41  E-value=4.9e-13  Score=128.43  Aligned_cols=106  Identities=19%  Similarity=0.321  Sum_probs=87.6

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ....++.+|||||||+|.++..+++.|..+|+|+|+| .+++.|+++...    .+++++++|+.+++++.  ++||+|+
T Consensus        39 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~--~~fD~v~  112 (243)
T 3bkw_A           39 LPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQ--DSFDLAY  112 (243)
T ss_dssp             SCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCT--TCEEEEE
T ss_pred             ccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCC--CCceEEE
Confidence            4456788999999999999999999876699999999 699999887543    35999999998876554  7999999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      +..+.+++   .....++..+.++|+|||.++....
T Consensus       113 ~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          113 SSLALHYV---EDVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             EESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             Eecccccc---chHHHHHHHHHHhcCcCcEEEEEeC
Confidence            98765444   3567889999999999999986543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.41  E-value=6.1e-13  Score=124.31  Aligned_cols=104  Identities=16%  Similarity=0.216  Sum_probs=86.5

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++ +|||||||+|.++..+++.|. +|+|+|+| .+++.|+++...++.  +++++++|+.+++++.  ++||+|++..
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~--~~fD~v~~~~  102 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVA--DAWEGIVSIF  102 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCT--TTCSEEEEEC
T ss_pred             CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCc--CCccEEEEEh
Confidence            456 999999999999999999876 99999999 699999999988766  5999999998876554  7899999853


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      . +  ........++..+.++|||||.++.....
T Consensus       103 ~-~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A          103 C-H--LPSSLRQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             C-C--CCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             h-c--CCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            2 2  24456788899999999999999865543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.41  E-value=3.2e-13  Score=126.98  Aligned_cols=109  Identities=18%  Similarity=0.232  Sum_probs=88.2

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      +.++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.|+++...   ..+++++.+|+.+++++.  ++||+|++.
T Consensus        40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~~~~~--~~fD~v~~~  114 (215)
T 2pxx_A           40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKLDFPS--ASFDVVLEK  114 (215)
T ss_dssp             CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSCCSCS--SCEEEEEEE
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcCCCCC--CcccEEEEC
Confidence            46788999999999999999999876699999999 699999988754   235899999998876554  789999997


Q ss_pred             ccccccc------------cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        155 WMGYCLF------------YESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       155 ~~~~~l~------------~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .+.+++.            +......++.++.++|||||.++.....
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A          115 GTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             SHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence            7644332            2345678899999999999999865443

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.41  E-value=1.1e-12  Score=123.78  Aligned_cols=106  Identities=15%  Similarity=0.111  Sum_probs=86.7

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ..+.++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|++    .+. .+++++++|+.++ .+.  ++||+|+
T Consensus        42 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~-~~~--~~~D~v~  112 (218)
T 3ou2_A           42 RAGNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW-TPD--RQWDAVF  112 (218)
T ss_dssp             TTTTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC-CCS--SCEEEEE
T ss_pred             hcCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC-CCC--CceeEEE
Confidence            3466778999999999999999999866 99999999 69999987    444 3599999999887 444  8999999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +..+.+++.. ..+..++.++.++|||||.++.....
T Consensus       113 ~~~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          113 FAHWLAHVPD-DRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             EESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EechhhcCCH-HHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            9887665543 33577899999999999999866544

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.41  E-value=4e-13  Score=129.11  Aligned_cols=100  Identities=18%  Similarity=0.221  Sum_probs=83.8

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++...     +++++++|++++ .+.  ++||+|++.
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~~~--~~fD~v~~~  110 (250)
T 2p7i_A           40 FFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-QLP--RRYDNIVLT  110 (250)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-CCS--SCEEEEEEE
T ss_pred             hcCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-CcC--CcccEEEEh
Confidence            34678999999999999999999876 89999999 699999987543     599999999886 343  789999998


Q ss_pred             ccccccccchhHHHHHHHHh-cccCcCeEEEccC
Q psy14674        155 WMGYCLFYESMLDTVLYARD-KWLATNGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~-r~LkpgG~lip~~  187 (519)
                      .+.+++   .....++.++. ++|||||.++...
T Consensus       111 ~~l~~~---~~~~~~l~~~~~~~LkpgG~l~i~~  141 (250)
T 2p7i_A          111 HVLEHI---DDPVALLKRINDDWLAEGGRLFLVC  141 (250)
T ss_dssp             SCGGGC---SSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hHHHhh---cCHHHHHHHHHHHhcCCCCEEEEEc
Confidence            875555   34578899999 9999999998654

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.40  E-value=8.3e-13  Score=132.45  Aligned_cols=113  Identities=13%  Similarity=0.104  Sum_probs=89.7

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCC------CCCcEEEEEceeeEee----cCCCC
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNN------LSDVVTILKGKVEEVE----LPFGI  145 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~------~~~~i~~~~~d~~~~~----~~~~~  145 (519)
                      .++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|+++....+      ...+++++++|+++++    ++...
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            4678999999999999998888767799999999 69999999887642      2346999999998865    43222


Q ss_pred             ceeeEEEEecccccc-ccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        146 QKVDIIISEWMGYCL-FYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l-~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++||+|+|..+.+++ ........++.++.++|||||.++.....
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            589999998876655 45566778999999999999999865543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.40  E-value=3.4e-13  Score=131.58  Aligned_cols=101  Identities=21%  Similarity=0.275  Sum_probs=86.0

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|+++..      +++++++|+.+++++   ++||+|++..
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~~---~~fD~v~~~~  118 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSLG---RRFSAVTCMF  118 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCCS---CCEEEEEECT
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCcc---CCcCEEEEcC
Confidence            4678999999999999999999876 89999999 69999998743      489999999887653   8999999986


Q ss_pred             -cccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        156 -MGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       156 -~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                       +.+++.....+..++..+.++|||||.++.+.
T Consensus       119 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          119 SSIGHLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             TGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             chhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence             66666555567888999999999999999864

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.40  E-value=8e-13  Score=124.37  Aligned_cols=97  Identities=19%  Similarity=0.236  Sum_probs=80.2

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      ++.+|||||||+|.++..+   +..+|+|+|+| .|++.|+++.      .+++++++|+.+++++.  ++||+|++..+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~--~~fD~v~~~~~  104 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPG--ESFDVVLLFTT  104 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCS--SCEEEEEEESC
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCC--CcEEEEEEcCh
Confidence            7889999999999988877   55599999999 6999998875      34789999998876654  78999999876


Q ss_pred             ccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      .+++   .....++.++.++|||||.++....
T Consensus       105 l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~  133 (211)
T 2gs9_A          105 LEFV---EDVERVLLEARRVLRPGGALVVGVL  133 (211)
T ss_dssp             TTTC---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhc---CCHHHHHHHHHHHcCCCCEEEEEec
Confidence            5544   3567889999999999999986543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.40  E-value=3.9e-13  Score=137.31  Aligned_cols=114  Identities=18%  Similarity=0.251  Sum_probs=87.8

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHH-------HHCCCC-CcEEEEEceeeEe
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIV-------DKNNLS-DVVTILKGKVEEV  139 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~-------~~~~~~-~~i~~~~~d~~~~  139 (519)
                      ++....+.++.+|||||||+|.+++.+|+. |+.+|+|||+| .+++.|++++       +.+|+. ++|+++++|+.++
T Consensus       165 il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l  244 (438)
T 3uwp_A          165 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE  244 (438)
T ss_dssp             HHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH
T ss_pred             HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC
Confidence            334456789999999999999999988864 77689999999 6999998754       445663 6799999999887


Q ss_pred             ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        140 ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       140 ~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +++.....+|+|+++.+.   . ...+...+.++.+.|||||+++...
T Consensus       245 p~~d~~~~aDVVf~Nn~~---F-~pdl~~aL~Ei~RvLKPGGrIVssE  288 (438)
T 3uwp_A          245 EWRERIANTSVIFVNNFA---F-GPEVDHQLKERFANMKEGGRIVSSK  288 (438)
T ss_dssp             HHHHHHHTCSEEEECCTT---C-CHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred             ccccccCCccEEEEcccc---c-CchHHHHHHHHHHcCCCCcEEEEee
Confidence            653211369999997652   2 3456666788889999999999543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.40  E-value=4.8e-13  Score=130.41  Aligned_cols=108  Identities=13%  Similarity=0.084  Sum_probs=82.2

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec---CCCC
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL---PFGI  145 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~  145 (519)
                      ++....+.++.+|||||||+|.++..+++.|+ +|+|+|+| .|++.|++++..+       ++.+++.++..   ....
T Consensus        37 il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~~~~  108 (261)
T 3iv6_A           37 DIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPKELA  108 (261)
T ss_dssp             HHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCGGGT
T ss_pred             HHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc-------cceeeeeecccccccccC
Confidence            44456778899999999999999999999876 99999999 6999999987654       23344444332   1112


Q ss_pred             ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ++||+|+++.+.+++.. .....++..+.++| |||.++.+.
T Consensus       109 ~~fD~Vv~~~~l~~~~~-~~~~~~l~~l~~lL-PGG~l~lS~  148 (261)
T 3iv6_A          109 GHFDFVLNDRLINRFTT-EEARRACLGMLSLV-GSGTVRASV  148 (261)
T ss_dssp             TCCSEEEEESCGGGSCH-HHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred             CCccEEEEhhhhHhCCH-HHHHHHHHHHHHhC-cCcEEEEEe
Confidence            68999999887665543 34667788888999 999998653

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.39  E-value=4.6e-13  Score=130.91  Aligned_cols=111  Identities=19%  Similarity=0.180  Sum_probs=88.4

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHH---CCCCCcEEEEEceeeEee-------c
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDK---NNLSDVVTILKGKVEEVE-------L  141 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~---~~~~~~i~~~~~d~~~~~-------~  141 (519)
                      ....++.+|||+|||+|.+++.+++.. ..+|+|+|++ .+++.|++++..   +++.++++++++|+.+..       +
T Consensus        32 ~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~  111 (260)
T 2ozv_A           32 VADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL  111 (260)
T ss_dssp             CCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC
T ss_pred             hcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc
Confidence            345678899999999999999998874 4699999999 699999999998   899888999999998762       2


Q ss_pred             CCCCceeeEEEEecccccc---------------ccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        142 PFGIQKVDIIISEWMGYCL---------------FYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l---------------~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +.  ++||+|++++.....               .....+..++..+.++|||||.++..
T Consensus       112 ~~--~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  169 (260)
T 2ozv_A          112 PD--EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI  169 (260)
T ss_dssp             CT--TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CC--CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence            33  789999998653221               01123677899999999999998753

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.39  E-value=3.9e-13  Score=129.17  Aligned_cols=102  Identities=19%  Similarity=0.257  Sum_probs=85.5

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      +.++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|+++.    ...+++++++|+.+++++.  ++||+|++.
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~--~~fD~v~~~  123 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFEN--EQFEAIMAI  123 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCT--TCEEEEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCC--CCccEEEEc
Confidence            35788999999999999999999876 99999999 6999988764    2346999999999877665  899999998


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      .+.+++   .....++.++.++|+|||.++...
T Consensus       124 ~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          124 NSLEWT---EEPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             SCTTSS---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ChHhhc---cCHHHHHHHHHHHhCCCeEEEEEE
Confidence            775544   456778999999999999998654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.39  E-value=1.4e-12  Score=122.60  Aligned_cols=105  Identities=20%  Similarity=0.091  Sum_probs=85.3

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ......++.+|||||||+|.++..+++.+ .+|+|+|++ ++++.|+++++.+++. +++++.+|+.+...+.  ++||+
T Consensus        71 ~~l~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~--~~~D~  146 (210)
T 3lbf_A           71 ELLELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQAR--APFDA  146 (210)
T ss_dssp             HHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGG--CCEEE
T ss_pred             HhcCCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCccC--CCccE
Confidence            33566789999999999999999999985 599999999 6999999999998887 5999999998754443  78999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |++....+++..         .+.++|||||.++.....
T Consensus       147 i~~~~~~~~~~~---------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          147 IIVTAAPPEIPT---------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             EEESSBCSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred             EEEccchhhhhH---------HHHHhcccCcEEEEEEcC
Confidence            999765443321         356899999999865544

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.39  E-value=7.8e-13  Score=125.95  Aligned_cols=108  Identities=19%  Similarity=0.156  Sum_probs=89.2

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ..+.++.+|||||||+|.+++.+++.| +.+|+|+|++ .+++.|+++++.+|+.++|+++.+|..+...+.  ++||+|
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~--~~~D~I   94 (230)
T 3lec_A           17 NYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEA--DNIDTI   94 (230)
T ss_dssp             TTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG--GCCCEE
T ss_pred             HhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccc--cccCEE
Confidence            345678899999999999999999986 6689999999 599999999999999999999999988754332  479998


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      +...++-     ..+..++.+..+.|+++|.+|.+..
T Consensus        95 viaGmGg-----~lI~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A           95 TICGMGG-----RLIADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             EEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             EEeCCch-----HHHHHHHHHHHHHhCcCCEEEEECC
Confidence            8655532     3466778888889999999985543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.39  E-value=8e-13  Score=125.74  Aligned_cols=108  Identities=17%  Similarity=0.156  Sum_probs=85.0

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-e--cCCCCceeeEEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-E--LPFGIQKVDIII  152 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~~~~D~Iv  152 (519)
                      ++.+|||||||+|.++..+|+. +...|+|||+| ++++.|+++++.+++.+ +.++++|+.++ +  ++.  +++|.|+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~~~--~~~d~v~  110 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMIPD--NSLRMVQ  110 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHSCT--TCEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHcCC--CChheEE
Confidence            5779999999999999998876 45689999999 69999999999999876 99999999875 2  454  8999999


Q ss_pred             Eeccccccccchh-----HHHHHHHHhcccCcCeEEEccCC
Q psy14674        153 SEWMGYCLFYESM-----LDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       153 s~~~~~~l~~e~~-----l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      +............     ...++..+.++|||||.++....
T Consensus       111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td  151 (218)
T 3dxy_A          111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD  151 (218)
T ss_dssp             EESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence            8643221111111     12578899999999999986654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.39  E-value=4.4e-13  Score=122.86  Aligned_cols=100  Identities=14%  Similarity=0.102  Sum_probs=80.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      .+..+|||+|||+|.+++.++.. +..+|+|+|+| .|++.|+++++.+|..+++.+  .|..... +.  ++||+|++.
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~-~~--~~~DvVLa~  122 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDV-YK--GTYDVVFLL  122 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHH-TT--SEEEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccC-CC--CCcChhhHh
Confidence            56789999999999999999776 33499999999 699999999999999876777  4554433 33  899999998


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      -+.|++ .  ..+..+..+.+.|+|||++|
T Consensus       123 k~LHlL-~--~~~~al~~v~~~L~pggvfI  149 (200)
T 3fzg_A          123 KMLPVL-K--QQDVNILDFLQLFHTQNFVI  149 (200)
T ss_dssp             TCHHHH-H--HTTCCHHHHHHTCEEEEEEE
T ss_pred             hHHHhh-h--hhHHHHHHHHHHhCCCCEEE
Confidence            887777 2  23344557789999999988

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.39  E-value=1.3e-12  Score=123.49  Aligned_cols=107  Identities=19%  Similarity=0.214  Sum_probs=85.4

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEEEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDIIIS  153 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~Ivs  153 (519)
                      ++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|++++..+++ .+++++++|+.++.  ++.  ++||+|++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~--~~~D~i~~  117 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFED--GEIDRLYL  117 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCT--TCCSEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCC--CCCCEEEE
Confidence            5789999999999999988887 35699999999 699999999999888 46999999998865  444  78999999


Q ss_pred             eccccccc--cc---hhHHHHHHHHhcccCcCeEEEccC
Q psy14674        154 EWMGYCLF--YE---SMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       154 ~~~~~~l~--~e---~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +.......  ++   .....++..+.++|+|||.++...
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  156 (214)
T 1yzh_A          118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  156 (214)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence            75432111  00   023568888999999999998754

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.38  E-value=8.8e-13  Score=124.17  Aligned_cols=102  Identities=18%  Similarity=0.203  Sum_probs=84.6

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ..+.++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|+++.       ++.++.+|+.+++ +.  ++||+|+
T Consensus        39 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~-~~--~~fD~v~  107 (211)
T 3e23_A           39 GELPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD-AI--DAYDAVW  107 (211)
T ss_dssp             TTSCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC-CC--SCEEEEE
T ss_pred             HhcCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC-CC--CcEEEEE
Confidence            3456788999999999999999999866 99999999 6999999886       2578889988776 33  8999999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +..+.+++. ...+..++.++.++|||||.++...
T Consensus       108 ~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~  141 (211)
T 3e23_A          108 AHACLLHVP-RDELADVLKLIWRALKPGGLFYASY  141 (211)
T ss_dssp             ECSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ecCchhhcC-HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            987766554 2357788999999999999998653

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.38  E-value=7.5e-13  Score=124.15  Aligned_cols=100  Identities=26%  Similarity=0.347  Sum_probs=85.8

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      +.++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.|++++..+++.+ ++++++|+.+.  ..  ++||+|+++
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~--~~--~~fD~i~~~  132 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLAD--VD--GKFDLIVAN  132 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTT--CC--SCEEEEEEE
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEecccccc--CC--CCceEEEEC
Confidence            45788999999999999999999888899999999 69999999999999877 99999998753  33  789999998


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ...+      .+..++..+.++|+|||.++..
T Consensus       133 ~~~~------~~~~~l~~~~~~L~~gG~l~~~  158 (205)
T 3grz_A          133 ILAE------ILLDLIPQLDSHLNEDGQVIFS  158 (205)
T ss_dssp             SCHH------HHHHHGGGSGGGEEEEEEEEEE
T ss_pred             CcHH------HHHHHHHHHHHhcCCCCEEEEE
Confidence            6532      2567788889999999999864

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.38  E-value=2.1e-12  Score=125.25  Aligned_cols=107  Identities=17%  Similarity=0.196  Sum_probs=88.0

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-ecCCCCceeeEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-ELPFGIQKVDIII  152 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~D~Iv  152 (519)
                      .++.+|||||||+|..+..+++. + ..+|+|+|++ ++++.|+++++.+++.++++++.+|+.+. +.....++||+|+
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~  141 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF  141 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence            46789999999999999999987 3 5699999999 69999999999999988899999999774 2222124899999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++..      ......++..+.++|||||+++.+...
T Consensus       142 ~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          142 IDAD------KPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             ECSC------GGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             ECCc------hHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            8642      233556788888999999999987766

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.38  E-value=1.4e-12  Score=125.08  Aligned_cols=107  Identities=22%  Similarity=0.262  Sum_probs=88.1

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      .++.+|||||||+|..+..+++. +..+|+|+|++ ++++.|+++++..++.++++++.+|+.+.......++||+|+++
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~  149 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID  149 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence            46789999999999999999985 35699999999 69999999999999988899999999875220112789999976


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ..      ......+++.+.++|||||+++.+...
T Consensus       150 ~~------~~~~~~~l~~~~~~LkpgG~lv~d~~~  178 (232)
T 3ntv_A          150 AA------KAQSKKFFEIYTPLLKHQGLVITDNVL  178 (232)
T ss_dssp             TT------SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred             Cc------HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence            43      233566788889999999999987665

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.38  E-value=1.2e-12  Score=124.62  Aligned_cols=109  Identities=19%  Similarity=0.298  Sum_probs=85.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-e-cCC--CCceee
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-E-LPF--GIQKVD  149 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~-~~~--~~~~~D  149 (519)
                      .++++|||||||+|..+..++++  ...+|+|+|++ ++++.|+++++.+++.++++++++|+.+. + ++.  ..++||
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD  136 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  136 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence            46789999999999999999985  25699999999 69999999999999988899999998764 1 110  015899


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +|+++...+..   .....++.++ ++|||||+++.+...
T Consensus       137 ~V~~d~~~~~~---~~~~~~~~~~-~~LkpgG~lv~~~~~  172 (221)
T 3u81_A          137 MVFLDHWKDRY---LPDTLLLEKC-GLLRKGTVLLADNVI  172 (221)
T ss_dssp             EEEECSCGGGH---HHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred             EEEEcCCcccc---hHHHHHHHhc-cccCCCeEEEEeCCC
Confidence            99987642221   2233456666 999999999988766

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.38  E-value=7e-13  Score=123.98  Aligned_cols=101  Identities=22%  Similarity=0.239  Sum_probs=84.7

Q ss_pred             CCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc
Q psy14674         79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG  157 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~  157 (519)
                      +.+|||||||+|.++..+++.|. +|+|+|+| .|++.|+++.      .+++++++|+.+++++.  ++||+|++..+.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~--~~fD~v~~~~~l  112 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSP--KRWAGLLAWYSL  112 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSC--CCEEEEEEESSS
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCC--CCeEEEEehhhH
Confidence            78999999999999999999876 99999999 6999999872      24899999999877665  899999998776


Q ss_pred             cccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        158 YCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       158 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +++.. .....++.++.++|||||.++.....
T Consensus       113 ~~~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~  143 (203)
T 3h2b_A          113 IHMGP-GELPDALVALRMAVEDGGGLLMSFFS  143 (203)
T ss_dssp             TTCCT-TTHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             hcCCH-HHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            65542 35778899999999999999865433

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.38  E-value=1.1e-12  Score=124.71  Aligned_cols=108  Identities=19%  Similarity=0.193  Sum_probs=88.3

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      .+.++.+|||||||+|.+++.+++.+ +.+|+|+|++ .+++.|+++++.+|+.++|+++.+|..+. ++.. ++||+|+
T Consensus        12 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~-l~~~-~~~D~Iv   89 (225)
T 3kr9_A           12 FVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA-FEET-DQVSVIT   89 (225)
T ss_dssp             TSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG-CCGG-GCCCEEE
T ss_pred             hCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh-cccC-cCCCEEE
Confidence            45678899999999999999999986 6689999999 59999999999999999999999998652 3320 3699998


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ...++-     ..+..++......|+++|.++.+...
T Consensus        90 iaG~Gg-----~~i~~Il~~~~~~L~~~~~lVlq~~~  121 (225)
T 3kr9_A           90 IAGMGG-----RLIARILEEGLGKLANVERLILQPNN  121 (225)
T ss_dssp             EEEECH-----HHHHHHHHHTGGGCTTCCEEEEEESS
T ss_pred             EcCCCh-----HHHHHHHHHHHHHhCCCCEEEEECCC
Confidence            755532     23677888888999999999965443

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.38  E-value=2.1e-13  Score=131.30  Aligned_cols=101  Identities=19%  Similarity=0.285  Sum_probs=83.3

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDII  151 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~I  151 (519)
                      .+.++.+|||||||+|.++..+++.|. +|+|+|+| ++++.|+++         ++++.+|+.+.  +++.  ++||+|
T Consensus        38 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~--~~fD~i  105 (240)
T 3dli_A           38 YFKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPD--KYLDGV  105 (240)
T ss_dssp             GTTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCT--TCBSEE
T ss_pred             hhcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCC--CCeeEE
Confidence            356788999999999999999998876 89999999 699988865         68888998875  4444  899999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      ++..+.+++. ...+..++.++.++|||||.++....
T Consensus       106 ~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (240)
T 3dli_A          106 MISHFVEHLD-PERLFELLSLCYSKMKYSSYIVIESP  141 (240)
T ss_dssp             EEESCGGGSC-GGGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred             EECCchhhCC-cHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            9988766664 33568889999999999999986543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.38  E-value=1.1e-12  Score=125.95  Aligned_cols=108  Identities=24%  Similarity=0.244  Sum_probs=89.0

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ..+.++.+|||||||+|.+++.+++.+ +.+|+|+|++ .+++.|+++++.+|+.++|++..+|..+...+.  ++||+|
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~--~~~D~I   94 (244)
T 3gnl_A           17 SYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKK--DAIDTI   94 (244)
T ss_dssp             TTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG--GCCCEE
T ss_pred             HhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCcc--ccccEE
Confidence            345678899999999999999999986 5689999999 599999999999999999999999988754332  369999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      +...++-     ..+..++.+..+.|+++|.+|.+..
T Consensus        95 viagmGg-----~lI~~IL~~~~~~L~~~~~lIlq~~  126 (244)
T 3gnl_A           95 VIAGMGG-----TLIRTILEEGAAKLAGVTKLILQPN  126 (244)
T ss_dssp             EEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             EEeCCch-----HHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            8755532     3466778888899999999985543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.38  E-value=1.9e-12  Score=119.15  Aligned_cols=107  Identities=23%  Similarity=0.307  Sum_probs=88.4

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ....++.+|||+|||+|.++..+++.+ .+|+|+|++ .+++.|++++..+++.++++++++|+.+ .++.. ++||+|+
T Consensus        29 ~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~-~~~D~v~  105 (192)
T 1l3i_A           29 AEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKI-PDIDIAV  105 (192)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTS-CCEEEEE
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccC-CCCCEEE
Confidence            356788999999999999999999987 699999999 6999999999999986779999999876 33321 4799999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +....+      .+..++..+.++|+|||.++.....
T Consensus       106 ~~~~~~------~~~~~l~~~~~~l~~gG~l~~~~~~  136 (192)
T 1l3i_A          106 VGGSGG------ELQEILRIIKDKLKPGGRIIVTAIL  136 (192)
T ss_dssp             ESCCTT------CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             ECCchH------HHHHHHHHHHHhcCCCcEEEEEecC
Confidence            865421      3577788899999999999865543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.38  E-value=9.5e-14  Score=133.75  Aligned_cols=106  Identities=20%  Similarity=0.262  Sum_probs=87.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||+|||+|.++..+++.| .+|+|+|+| .|++.|+++++.+++.++++++++|+.++. +.  ++||+|+++.
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~--~~~D~v~~~~  152 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SF--LKADVVFLSP  152 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GG--CCCSEEEECC
T ss_pred             cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-cc--CCCCEEEECC
Confidence            378899999999999999999987 599999999 699999999999998777999999998865 33  7999999988


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.++...   ....+..+.++|+|||.++.+...
T Consensus       153 ~~~~~~~---~~~~~~~~~~~L~pgG~~i~~~~~  183 (241)
T 3gdh_A          153 PWGGPDY---ATAETFDIRTMMSPDGFEIFRLSK  183 (241)
T ss_dssp             CCSSGGG---GGSSSBCTTTSCSSCHHHHHHHHH
T ss_pred             CcCCcch---hhhHHHHHHhhcCCcceeHHHHHH
Confidence            7554432   222455677999999997766543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.37  E-value=4.9e-13  Score=121.10  Aligned_cols=104  Identities=18%  Similarity=0.133  Sum_probs=81.7

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEEEe
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIIISE  154 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Ivs~  154 (519)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+| ++++.|+++++.+++  +++++++|+.+.  ..+...++||+|+++
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~  117 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence            678999999999999999999877 59999999 699999999998887  589999998874  122111479999998


Q ss_pred             ccccccccchhHHHHHHHHh--cccCcCeEEEccCCc
Q psy14674        155 WMGYCLFYESMLDTVLYARD--KWLATNGLLFPDKAS  189 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~--r~LkpgG~lip~~~~  189 (519)
                      ...+ .    ....++..+.  ++|+|||.++.....
T Consensus       118 ~~~~-~----~~~~~~~~~~~~~~L~~gG~~~~~~~~  149 (171)
T 1ws6_A          118 PPYA-M----DLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             CCTT-S----CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             CCCc-h----hHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence            7633 2    2333444454  999999999876555

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.37  E-value=1.6e-12  Score=127.59  Aligned_cols=115  Identities=18%  Similarity=0.186  Sum_probs=90.4

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC-CEEEEEech-H------HHHHHHHHHHHCCCCCcEEEEEce---e
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GA-ARVIGIECS-N------IVEYAKEIVDKNNLSDVVTILKGK---V  136 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~gvD~s-~------~~~~A~~~~~~~~~~~~i~~~~~d---~  136 (519)
                      .++....+.++.+|||||||+|.++..+++. |. .+|+|+|+| +      +++.|+++++.+++.++++++.+|   .
T Consensus        34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  113 (275)
T 3bkx_A           34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD  113 (275)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT
T ss_pred             HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh
Confidence            3444456778999999999999999999887 43 699999999 5      899999999998887789999998   3


Q ss_pred             eEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        137 EEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       137 ~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      ..++++.  ++||+|++..+.+++..   ...+++.+.++++|||.++....
T Consensus       114 ~~~~~~~--~~fD~v~~~~~l~~~~~---~~~~~~~~~~l~~~gG~l~~~~~  160 (275)
T 3bkx_A          114 DLGPIAD--QHFDRVVLAHSLWYFAS---ANALALLFKNMAAVCDHVDVAEW  160 (275)
T ss_dssp             CCGGGTT--CCCSEEEEESCGGGSSC---HHHHHHHHHHHTTTCSEEEEEEE
T ss_pred             ccCCCCC--CCEEEEEEccchhhCCC---HHHHHHHHHHHhCCCCEEEEEEe
Confidence            3334444  78999999887665543   34467777777888999986543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.36  E-value=5e-13  Score=126.57  Aligned_cols=101  Identities=26%  Similarity=0.279  Sum_probs=83.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++..     .+++++.+|+.+++.+   ++||+|++..
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~---~~fD~v~~~~  114 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP---TSIDTIVSTY  114 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC---SCCSEEEEES
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC---CCeEEEEECc
Confidence            4788999999999999999999865 99999999 69999998754     3589999999987655   7899999987


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +.+++... ....++.++.++|||||.++...
T Consensus       115 ~l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          115 AFHHLTDD-EKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             CGGGSCHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             chhcCChH-HHHHHHHHHHHhcCCCCEEEEEe
Confidence            76655432 22347899999999999998654

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.36  E-value=6.4e-13  Score=124.64  Aligned_cols=101  Identities=17%  Similarity=0.280  Sum_probs=84.9

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      ++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|++++..+++.+ ++++++|+.+.. +.  ++||+|++..
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~--~~~D~i~~~~  140 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFP-SE--PPFDGVISRA  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSC-CC--SCEEEEECSC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCC-cc--CCcCEEEEec
Confidence            5789999999999999988876 45699999999 69999999999999876 999999998754 33  7899999854


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +       ..+..++..+.++|+|||.++.....
T Consensus       141 ~-------~~~~~~l~~~~~~L~~gG~l~~~~~~  167 (207)
T 1jsx_A          141 F-------ASLNDMVSWCHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             S-------SSHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred             c-------CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            3       23567889999999999999876443

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.36  E-value=1.3e-12  Score=129.84  Aligned_cols=105  Identities=25%  Similarity=0.209  Sum_probs=75.6

Q ss_pred             CCCCEEEEECCcccHHHHHH-----HHcCCCEE--EEEech-HHHHHHHHHHHHC-CCCC-cEEEEEceeeEee------
Q psy14674         77 FKGKIVLDIGCGTGILSMFA-----AKSGAARV--IGIECS-NIVEYAKEIVDKN-NLSD-VVTILKGKVEEVE------  140 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~l-----a~~g~~~V--~gvD~s-~~~~~A~~~~~~~-~~~~-~i~~~~~d~~~~~------  140 (519)
                      .++.+|||||||+|.++..+     ++.+..+|  +|+|+| +|++.|+++++.. ++.+ ++.+..++++++.      
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            46779999999999765422     22233444  999999 6999999998764 4432 2344556665443      


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +++  ++||+|++..+.+++   .++..++.+++++|||||.++..
T Consensus       131 ~~~--~~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~  171 (292)
T 2aot_A          131 KEL--QKWDFIHMIQMLYYV---KDIPATLKFFHSLLGTNAKMLII  171 (292)
T ss_dssp             TCC--CCEEEEEEESCGGGC---SCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cCC--CceeEEEEeeeeeec---CCHHHHHHHHHHHcCCCcEEEEE
Confidence            233  789999998875555   45778899999999999998854

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.36  E-value=2.1e-12  Score=122.05  Aligned_cols=104  Identities=17%  Similarity=0.173  Sum_probs=78.2

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceee
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVD  149 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D  149 (519)
                      ..+.++.+|||+|||+|.++..+++. |..+|+|+|+| .|++.+.+.++..   +++.++.+|+.+..  .+. .++||
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~-~~~fD  128 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGI-VEKVD  128 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTT-CCCEE
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhccc-cccee
Confidence            34568899999999999999988876 44699999999 5887776666543   24888888887641  121 17899


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +|+++..     .......++.++.++|||||.++..
T Consensus       129 ~V~~~~~-----~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          129 LIYQDIA-----QKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             EEEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEecc-----ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            9999732     2233455688899999999999865

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.35  E-value=1.8e-12  Score=124.06  Aligned_cols=104  Identities=14%  Similarity=0.208  Sum_probs=82.8

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE----eecCCCC
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE----VELPFGI  145 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~  145 (519)
                      ....+.++.+|||+|||+|.++..+++. |..+|+|+|+| .|++.|+++++.+   .++.++.+|+.+    ..++   
T Consensus        68 ~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~---  141 (230)
T 1fbn_A           68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIV---  141 (230)
T ss_dssp             CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTS---
T ss_pred             cccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccC---
Confidence            3445678899999999999999999887 65799999999 6999999987654   469999999987    3333   


Q ss_pred             ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ++||+|+.+.     ........++..+.++|||||.++..
T Consensus       142 ~~~D~v~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          142 EKVDVIYEDV-----AQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CCEEEEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEEEEec-----CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            6899998432     22334467788899999999998865

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.35  E-value=1.4e-12  Score=134.70  Aligned_cols=107  Identities=31%  Similarity=0.438  Sum_probs=88.2

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHC-----C-CC-CcEEEEEceeeEe------
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKN-----N-LS-DVVTILKGKVEEV------  139 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~-----~-~~-~~i~~~~~d~~~~------  139 (519)
                      ..++.+|||||||+|.++..+++.  +..+|+|+|+| .|++.|+++++.+     | +. .+++++++|++++      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            457889999999999999988876  34599999999 6999999988765     3 22 4699999999886      


Q ss_pred             ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        140 ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       140 ~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +++.  ++||+|++..+.+++   .....++.++.++|||||.++...
T Consensus       161 ~~~~--~~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          161 GVPD--SSVDIVISNCVCNLS---TNKLALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             CCCT--TCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCC--CCEEEEEEccchhcC---CCHHHHHHHHHHHcCCCCEEEEEE
Confidence            5554  799999998875544   347788999999999999998654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.35  E-value=3.2e-12  Score=116.76  Aligned_cols=102  Identities=23%  Similarity=0.317  Sum_probs=85.0

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ....++.+|||+|||+|.++..+++ +..+|+|+|++ .+++.|+++++.+++. +++++++|+.+ .++.  ++||+|+
T Consensus        31 ~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~~~--~~~D~i~  105 (183)
T 2yxd_A           31 LNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIKGRAED-VLDK--LEFNKAF  105 (183)
T ss_dssp             HCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEESCHHH-HGGG--CCCSEEE
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEECCccc-cccC--CCCcEEE
Confidence            3456788999999999999999998 56699999999 6999999999999884 59999999987 5554  6899999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +...       .....++..+.++  |||.++.....
T Consensus       106 ~~~~-------~~~~~~l~~~~~~--~gG~l~~~~~~  133 (183)
T 2yxd_A          106 IGGT-------KNIEKIIEILDKK--KINHIVANTIV  133 (183)
T ss_dssp             ECSC-------SCHHHHHHHHHHT--TCCEEEEEESC
T ss_pred             ECCc-------ccHHHHHHHHhhC--CCCEEEEEecc
Confidence            9765       3456777877777  99999866544

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.35  E-value=2e-12  Score=125.96  Aligned_cols=99  Identities=24%  Similarity=0.454  Sum_probs=84.6

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      +.++.+|||+|||+|.++..+++.|+ +|+|+|++ .+++.|+++++.+++.  ++++.+|+.+. ++.  ++||+|+++
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-~~~--~~fD~Vv~n  191 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-LPF--GPFDLLVAN  191 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-GGG--CCEEEEEEE
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-CcC--CCCCEEEEC
Confidence            46788999999999999999999988 99999999 6999999999999886  89999998763 443  789999997


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      .+.+      .+..++..+.++|||||.++..
T Consensus       192 ~~~~------~~~~~l~~~~~~LkpgG~lils  217 (254)
T 2nxc_A          192 LYAE------LHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             CCHH------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcHH------HHHHHHHHHHHHcCCCCEEEEE
Confidence            6522      3567788889999999999864

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.35  E-value=2.1e-12  Score=122.34  Aligned_cols=107  Identities=16%  Similarity=0.182  Sum_probs=84.2

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEEEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDIIIS  153 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~Ivs  153 (519)
                      ++.+|||||||+|.++..+|+. +..+|+|+|+| ++++.|+++++.+++.+ ++++++|+.++.  ++.  +.+|.|++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~n-v~~~~~d~~~l~~~~~~--~~~d~v~~  114 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDVFEP--GEVKRVYL  114 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHHCCT--TSCCEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCC-EEEEeCCHHHHHhhcCc--CCcCEEEE
Confidence            5679999999999999998886 45699999999 69999999999998854 999999998764  444  78999987


Q ss_pred             eccccccc--c---chhHHHHHHHHhcccCcCeEEEccC
Q psy14674        154 EWMGYCLF--Y---ESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       154 ~~~~~~l~--~---e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ........  +   .-....++..+.++|||||.++...
T Consensus       115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence            54321111  0   0113567889999999999998664

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.35  E-value=6.8e-13  Score=129.16  Aligned_cols=113  Identities=18%  Similarity=0.207  Sum_probs=87.2

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC----------------------------
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL----------------------------  125 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~----------------------------  125 (519)
                      ...++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|++++..++.                            
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            456788999999999999999988876799999999 699999998765431                            


Q ss_pred             CCcE-EEEEceeeEeec-C-CCCceeeEEEEeccccccc-cchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        126 SDVV-TILKGKVEEVEL-P-FGIQKVDIIISEWMGYCLF-YESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       126 ~~~i-~~~~~d~~~~~~-~-~~~~~~D~Ivs~~~~~~l~-~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ..++ +++.+|+.+... + ...++||+|++..+.+++. +......++..+.++|||||.++...
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  198 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD  198 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence            1137 899999987532 2 1116899999977644332 33467788999999999999998654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.34  E-value=2.6e-12  Score=132.17  Aligned_cols=114  Identities=13%  Similarity=0.142  Sum_probs=89.2

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCC--cEEEEEceeeEeecCCCC
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSD--VVTILKGKVEEVELPFGI  145 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~--~i~~~~~d~~~~~~~~~~  145 (519)
                      ++......++.+|||+|||+|.++..+++.+ ..+|+|+|+| .+++.|+++++.+++.+  +++++.+|+.+ .++.  
T Consensus       214 ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~--  290 (375)
T 4dcm_A          214 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEP--  290 (375)
T ss_dssp             HHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCT--
T ss_pred             HHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCC--
Confidence            3444555667899999999999999999884 5699999999 69999999999998764  58889999887 3443  


Q ss_pred             ceeeEEEEeccccccc--cchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        146 QKVDIIISEWMGYCLF--YESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~--~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ++||+|++++..+...  .......++..+.++|||||.++..
T Consensus       291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv  333 (375)
T 4dcm_A          291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  333 (375)
T ss_dssp             TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            7899999988754321  1233456789999999999998863

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.34  E-value=2.7e-12  Score=124.54  Aligned_cols=106  Identities=20%  Similarity=0.230  Sum_probs=86.2

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      ++......++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|+++      ..+++++.+|+++++ +.  ++
T Consensus        25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~-~~--~~   95 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK-PA--QK   95 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC-CS--SC
T ss_pred             HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC-cc--CC
Confidence            444455677889999999999999998887 34599999999 699999887      134899999998766 43  78


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ||+|++..+.+++   .....++..+.++|||||.++...
T Consensus        96 fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A           96 ADLLYANAVFQWV---PDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             EEEEEEESCGGGS---TTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cCEEEEeCchhhC---CCHHHHHHHHHHhcCCCeEEEEEe
Confidence            9999998775554   457788999999999999998654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.34  E-value=3.3e-12  Score=121.39  Aligned_cols=107  Identities=18%  Similarity=0.243  Sum_probs=87.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCC-CceeeE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFG-IQKVDI  150 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~-~~~~D~  150 (519)
                      .++.+|||||||+|..+..+++. + ..+|+|+|++ ++++.|+++++..++.++++++++|+.+.  .++.. .++||+
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~  136 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF  136 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence            46789999999999999999987 2 4599999999 69999999999999988899999999764  12111 146999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |++...      ......++..+.++|+|||+++.+...
T Consensus       137 v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~  169 (223)
T 3duw_A          137 IFIDAD------KQNNPAYFEWALKLSRPGTVIIGDNVV  169 (223)
T ss_dssp             EEECSC------GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred             EEEcCC------cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            998654      124566788888999999999987766

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.34  E-value=3.3e-12  Score=131.51  Aligned_cols=109  Identities=24%  Similarity=0.284  Sum_probs=90.5

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..++.+|||+|||+|.++..+++.++ +|+|+|+| .+++.|+++++.+++.  ++++.+|+.+...+.  ++||+|+++
T Consensus       231 ~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~~~~~--~~fD~Ii~n  305 (381)
T 3dmg_A          231 GVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEALTEE--ARFDIIVTN  305 (381)
T ss_dssp             TTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTSCTT--CCEEEEEEC
T ss_pred             CCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhccccC--CCeEEEEEC
Confidence            45788999999999999999999876 99999999 6999999999999875  799999998764443  799999998


Q ss_pred             ccccccc--cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        155 WMGYCLF--YESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       155 ~~~~~l~--~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ...+...  .......++..+.++|||||.++.....
T Consensus       306 pp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~  342 (381)
T 3dmg_A          306 PPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP  342 (381)
T ss_dssp             CCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred             CchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence            8755421  1345778899999999999999865443

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.34  E-value=1.5e-12  Score=134.58  Aligned_cols=113  Identities=19%  Similarity=0.149  Sum_probs=90.5

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCC-cEEEEEceeeEee--cCCCCceeeEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSD-VVTILKGKVEEVE--LPFGIQKVDIII  152 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~-~i~~~~~d~~~~~--~~~~~~~~D~Iv  152 (519)
                      .++++|||+|||+|.+++.+|+.|+++|+|+|+| .+++.|+++++.|++.+ +++++++|+.+..  +....++||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            5788999999999999999999888899999999 69999999999999975 7999999997741  111115899999


Q ss_pred             Eeccccc------cccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYC------LFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~------l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +++....      ......+..++..+.++|+|||.++.+.+.
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~  333 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  333 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            9875421      111234555777888999999999977766

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.34  E-value=1.5e-12  Score=128.26  Aligned_cols=100  Identities=22%  Similarity=0.354  Sum_probs=82.7

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ...++.+|||||||+|.++..+++.+ .+|+|+|+| .|++.|+++.      .+++++.+|+++++++   ++||+|++
T Consensus        54 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~---~~fD~v~~  123 (279)
T 3ccf_A           54 NPQPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVD---KPLDAVFS  123 (279)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCS---SCEEEEEE
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcC---CCcCEEEE
Confidence            45678899999999999999999865 499999999 6999998864      2478999999886653   79999999


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ..+.+++   .....++.++.++|||||.++...
T Consensus       124 ~~~l~~~---~d~~~~l~~~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          124 NAMLHWV---KEPEAAIASIHQALKSGGRFVAEF  154 (279)
T ss_dssp             ESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhhhC---cCHHHHHHHHHHhcCCCcEEEEEe
Confidence            8775544   346788999999999999998643

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.33  E-value=3.4e-12  Score=122.15  Aligned_cols=103  Identities=19%  Similarity=0.258  Sum_probs=84.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|+++.      .+++++.+|+.+++.+   ++||+|+|..
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~---~~~D~v~~~~  108 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRLG---RKFSAVVSMF  108 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCCS---SCEEEEEECT
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcccC---CCCcEEEEcC
Confidence            5778999999999999999998866 99999999 6999998864      2389999999876553   7899999643


Q ss_pred             -cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 -MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 -~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                       +.+++.....+..++..+.++|||||.++.+...
T Consensus       109 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (239)
T 3bxo_A          109 SSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW  143 (239)
T ss_dssp             TGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             chHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence             4454544456788899999999999999976543

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.33  E-value=1.4e-12  Score=131.96  Aligned_cols=109  Identities=20%  Similarity=0.117  Sum_probs=87.4

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCC-cEEEEEceeeEeecC--CCCceeeEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSD-VVTILKGKVEEVELP--FGIQKVDIII  152 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~-~i~~~~~d~~~~~~~--~~~~~~D~Iv  152 (519)
                      .++.+|||+|||+|.+++.+++.|+ +|+|||+| .+++.|+++++.+++.+ +++++++|+.++...  ...++||+|+
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            4678999999999999999999888 99999999 69999999999999876 599999999875211  0016899999


Q ss_pred             Eecccccc-------ccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        153 SEWMGYCL-------FYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       153 s~~~~~~l-------~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +++..+..       .....+..++..+.++|+|||.++..
T Consensus       231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~  271 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL  271 (332)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred             ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEE
Confidence            98753322       12345677888889999999996643

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.33  E-value=4.2e-12  Score=127.69  Aligned_cols=108  Identities=23%  Similarity=0.167  Sum_probs=86.8

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGA--ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      +.....+.++.+|||||||+|.++..+++.+.  .+|+|+|+| ++++.|+++++.+++.+ ++++.+|+.+...+.  +
T Consensus        67 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~~~~--~  143 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVPEF--S  143 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGG--C
T ss_pred             HHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhccccC--C
Confidence            33445677899999999999999999988743  479999999 69999999999999876 999999998743333  7


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +||+|++..+.+++.         ..+.++|||||+++....+
T Consensus       144 ~fD~Iv~~~~~~~~~---------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          144 PYDVIFVTVGVDEVP---------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             CEEEEEECSBBSCCC---------HHHHHHEEEEEEEEEEBCB
T ss_pred             CeEEEEEcCCHHHHH---------HHHHHhcCCCcEEEEEECC
Confidence            899999987754432         3456899999999976544

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.33  E-value=1.4e-12  Score=128.16  Aligned_cols=99  Identities=18%  Similarity=0.196  Sum_probs=83.3

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..+|.+|||+|||+|.+++.+|+.|+++|+|+|++ .+++.++++++.|++.++++++++|+.++...   +.||.|+.+
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~---~~~D~Vi~~  199 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE---NIADRILMG  199 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC---SCEEEEEEC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccc---cCCCEEEEC
Confidence            46899999999999999999999998899999999 59999999999999999999999999876433   789999987


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ....   .+..    +..+.++||+||.+.
T Consensus       200 ~p~~---~~~~----l~~a~~~lk~gG~ih  222 (278)
T 3k6r_A          200 YVVR---THEF----IPKALSIAKDGAIIH  222 (278)
T ss_dssp             CCSS---GGGG----HHHHHHHEEEEEEEE
T ss_pred             CCCc---HHHH----HHHHHHHcCCCCEEE
Confidence            6522   2223    344457899999875

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.32  E-value=1.1e-12  Score=126.80  Aligned_cols=108  Identities=16%  Similarity=0.146  Sum_probs=88.0

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC----CCceee
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF----GIQKVD  149 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~~~D  149 (519)
                      .++++|||||||+|..++.+|++ + ..+|+|+|++ ++++.|+++++.+++.++|+++.+|+.+.....    ..++||
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD  138 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD  138 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence            46789999999999999999985 2 5699999999 699999999999999888999999997652110    016899


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASL  190 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~  190 (519)
                      +|+++..      ......+++.+.++|||||+++.+...+
T Consensus       139 ~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~  173 (242)
T 3r3h_A          139 FIFIDAD------KTNYLNYYELALKLVTPKGLIAIDNIFW  173 (242)
T ss_dssp             EEEEESC------GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred             EEEEcCC------hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence            9998753      2335567888889999999999887663

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.32  E-value=4e-12  Score=125.88  Aligned_cols=108  Identities=22%  Similarity=0.237  Sum_probs=85.6

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee---eEEEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV---DIIIS  153 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~---D~Ivs  153 (519)
                      ++.+|||+|||+|.++..+++.+..+|+|+|+| .+++.|+++++.+++.++++++++|+.+. ++   ++|   |+|+|
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~---~~f~~~D~Ivs  198 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK---EKFASIEMILS  198 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG---GGTTTCCEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc---cccCCCCEEEE
Confidence            567999999999999999888755599999999 69999999999999988899999999862 33   578   99999


Q ss_pred             eccccccc--------cchhH--------HHHHHHHh-cccCcCeEEEccCCc
Q psy14674        154 EWMGYCLF--------YESML--------DTVLYARD-KWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~--------~e~~l--------~~~l~~~~-r~LkpgG~lip~~~~  189 (519)
                      ++......        ++...        ..++..+. +.|+|||.++.....
T Consensus       199 nPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~  251 (284)
T 1nv8_A          199 NPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE  251 (284)
T ss_dssp             CCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred             cCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence            85422110        22111        15678888 999999999976554

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.32  E-value=9.4e-13  Score=128.53  Aligned_cols=102  Identities=27%  Similarity=0.299  Sum_probs=82.9

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      +.......++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|+++.       +++++++|+++++++.  ++|
T Consensus        26 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~--~~f   95 (261)
T 3ege_A           26 IINLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPD--KSV   95 (261)
T ss_dssp             HHHHHCCCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCT--TCB
T ss_pred             HHHHhCCCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCC--CCE
Confidence            33334457889999999999999999998664 99999999 5888776543       5999999999877665  899


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      |+|++..+.+++   .....++.++.++|| ||.++.
T Consensus        96 D~v~~~~~l~~~---~~~~~~l~~~~~~Lk-gG~~~~  128 (261)
T 3ege_A           96 DGVISILAIHHF---SHLEKSFQEMQRIIR-DGTIVL  128 (261)
T ss_dssp             SEEEEESCGGGC---SSHHHHHHHHHHHBC-SSCEEE
T ss_pred             eEEEEcchHhhc---cCHHHHHHHHHHHhC-CcEEEE
Confidence            999998875554   457788999999999 996653

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.32  E-value=2.6e-12  Score=122.16  Aligned_cols=107  Identities=22%  Similarity=0.222  Sum_probs=87.2

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCC--Cceee
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFG--IQKVD  149 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~--~~~~D  149 (519)
                      .++.+|||||||+|..+..+++. + ..+|+++|++ ++++.|+++++.+++.++++++++|+.+..  ++..  .++||
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            46789999999999999999986 2 5699999999 699999999999999988999999996641  1110  15899


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +|+++..      ......++..+.++|||||+++.+...
T Consensus       143 ~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          143 LIYIDAD------KANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             EEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             EEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            9997543      234566788888999999999987665

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.32  E-value=3.8e-12  Score=123.54  Aligned_cols=108  Identities=23%  Similarity=0.332  Sum_probs=89.1

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      +.....+.++.+|||+|||+|.++..+++. + ..+|+|+|++ ++++.|+++++.+++.++++++++|+.+. ++.  +
T Consensus        85 i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~--~  161 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEE--E  161 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCC--C
T ss_pred             HHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCC--C
Confidence            444466788999999999999999999887 4 6699999999 69999999999999988899999999864 444  7


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      +||+|+++..        ....++..+.++|+|||.++....
T Consensus       162 ~~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~~  195 (255)
T 3mb5_A          162 NVDHVILDLP--------QPERVVEHAAKALKPGGFFVAYTP  195 (255)
T ss_dssp             SEEEEEECSS--------CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CcCEEEECCC--------CHHHHHHHHHHHcCCCCEEEEEEC
Confidence            8999998543        224457777899999999985543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.32  E-value=1.2e-12  Score=118.83  Aligned_cols=97  Identities=21%  Similarity=0.245  Sum_probs=80.8

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.|+++      ..+++++.+|   .+++.  ++||+|++.
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~v~~~~~d---~~~~~--~~~D~v~~~   82 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK------FDSVITLSDP---KEIPD--NSVDFILFA   82 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH------CTTSEEESSG---GGSCT--TCEEEEEEE
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh------CCCcEEEeCC---CCCCC--CceEEEEEc
Confidence            46788999999999999999999876 99999999 699999887      2358999998   44554  799999998


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      .+.+++   .....+++++.++|||||.++...
T Consensus        83 ~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~  112 (170)
T 3i9f_A           83 NSFHDM---DDKQHVISEVKRILKDDGRVIIID  112 (170)
T ss_dssp             SCSTTC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhcc---cCHHHHHHHHHHhcCCCCEEEEEE
Confidence            775554   346788999999999999998653

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.31  E-value=1.5e-12  Score=123.40  Aligned_cols=101  Identities=21%  Similarity=0.314  Sum_probs=80.8

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe---ecCCCCceeeEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV---ELPFGIQKVDII  151 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~~~D~I  151 (519)
                      ..++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|+++       .++.++.+++.++   +.+. .++||+|
T Consensus        50 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~-~~~fD~v  120 (227)
T 3e8s_A           50 GRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPV-GKDYDLI  120 (227)
T ss_dssp             HTCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCC-CCCEEEE
T ss_pred             cCCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh-------cccccchhhHHhhccccccc-CCCccEE
Confidence            34678999999999999999999866 99999999 699999876       2367888888776   2232 1569999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++..+.+    ......++..+.++|||||.++.....
T Consensus       121 ~~~~~l~----~~~~~~~l~~~~~~L~pgG~l~~~~~~  154 (227)
T 3e8s_A          121 CANFALL----HQDIIELLSAMRTLLVPGGALVIQTLH  154 (227)
T ss_dssp             EEESCCC----SSCCHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EECchhh----hhhHHHHHHHHHHHhCCCeEEEEEecC
Confidence            9987644    345678899999999999999976544

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.31  E-value=4.9e-12  Score=120.87  Aligned_cols=106  Identities=14%  Similarity=0.198  Sum_probs=83.7

Q ss_pred             cCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCcee
Q psy14674         73 NKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKV  148 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~  148 (519)
                      ...+.+|.+|||+|||+|.++..+|+.  +.++|+|+|++ +|++.+++++++.+   ++..+.+|..... .+...+.+
T Consensus        72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~---ni~~V~~d~~~p~~~~~~~~~v  148 (233)
T 4df3_A           72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR---NIFPILGDARFPEKYRHLVEGV  148 (233)
T ss_dssp             CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT---TEEEEESCTTCGGGGTTTCCCE
T ss_pred             hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc---CeeEEEEeccCccccccccceE
Confidence            456899999999999999999999987  45799999999 69999998876543   4888998887642 23333789


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      |+|+++..     +......++.++.+.|||||.++..
T Consensus       149 DvVf~d~~-----~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          149 DGLYADVA-----QPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             EEEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEecc-----CChhHHHHHHHHHHhccCCCEEEEE
Confidence            99987643     2234567788899999999998853

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.31  E-value=4.7e-12  Score=119.30  Aligned_cols=105  Identities=26%  Similarity=0.277  Sum_probs=85.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      .++++|||||||+|..+..+++. + ..+|+++|++ .+++.|+++++.+++.++++++.+|+.+.. +...+ ||+|++
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~-fD~v~~  132 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIA-AGQRD-IDILFM  132 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHH-TTCCS-EEEEEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHh-ccCCC-CCEEEE
Confidence            35789999999999999999887 3 4699999999 699999999999888888999999997641 21126 999998


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +..      ......+++.+.++|||||.++.+...
T Consensus       133 ~~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~  162 (210)
T 3c3p_A          133 DCD------VFNGADVLERMNRCLAKNALLIAVNAL  162 (210)
T ss_dssp             ETT------TSCHHHHHHHHGGGEEEEEEEEEESSS
T ss_pred             cCC------hhhhHHHHHHHHHhcCCCeEEEEECcc
Confidence            742      134567788899999999999987654

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.31  E-value=5.5e-12  Score=122.93  Aligned_cols=100  Identities=23%  Similarity=0.326  Sum_probs=80.3

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      ++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|+++..     .  .++.+|+.+++++.  ++||+|++...
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~~~~--~~fD~v~~~~~  123 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLPFPS--GAFEAVLALGD  123 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCCSCT--TCEEEEEECSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCCCCC--CCEEEEEEcch
Confidence            788999999999999999998866 99999999 69999988753     1  27888988776654  78999998653


Q ss_pred             ccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ..++.  .....++.++.++|||||.++....+
T Consensus       124 ~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          124 VLSYV--ENKDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             HHHHC--SCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             hhhcc--ccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            22222  22778899999999999999865544

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.30  E-value=9.7e-12  Score=122.42  Aligned_cols=121  Identities=17%  Similarity=0.197  Sum_probs=91.6

Q ss_pred             HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee
Q psy14674         63 TMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE  140 (519)
Q Consensus        63 ~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~  140 (519)
                      ++.+.+.++.... .++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|+++++.+++. +++++++|+.+. 
T Consensus        95 te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~-  171 (276)
T 2b3t_A           95 TECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSA-  171 (276)
T ss_dssp             HHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGG-
T ss_pred             HHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhh-
Confidence            3444444444333 56789999999999999988865 55699999999 6999999999998886 599999998763 


Q ss_pred             cCCCCceeeEEEEecccccc----------ccc------------hhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        141 LPFGIQKVDIIISEWMGYCL----------FYE------------SMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l----------~~e------------~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      ++.  ++||+|++++.....          .++            ..+..++..+.++|+|||.++....
T Consensus       172 ~~~--~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~  239 (276)
T 2b3t_A          172 LAG--QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG  239 (276)
T ss_dssp             GTT--CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             ccc--CCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            333  789999998542211          111            2457788899999999999987644

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.30  E-value=6.4e-12  Score=124.18  Aligned_cols=118  Identities=17%  Similarity=0.323  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEec-h-HHHHHHHHHH-----HHCCCC----CcEEE
Q psy14674         63 TMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIEC-S-NIVEYAKEIV-----DKNNLS----DVVTI  131 (519)
Q Consensus        63 ~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~-s-~~~~~A~~~~-----~~~~~~----~~i~~  131 (519)
                      +....+.+.......++++|||||||+|.+++.+++.|+++|+|+|+ | .+++.|++++     +.+++.    +++++
T Consensus        64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~  143 (281)
T 3bzb_A           64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKV  143 (281)
T ss_dssp             HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEE
T ss_pred             HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEE
Confidence            34444555554445678999999999999999999988779999999 7 6999999999     555554    45778


Q ss_pred             EEceeeEe--ec----CCCCceeeEEEEeccccccccchhHHHHHHHHhcccC---c--CeEEEc
Q psy14674        132 LKGKVEEV--EL----PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLA---T--NGLLFP  185 (519)
Q Consensus       132 ~~~d~~~~--~~----~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~Lk---p--gG~lip  185 (519)
                      +..+..+.  .+    +.  ++||+|++.-+   +.+......++..+.++|+   |  ||.++.
T Consensus       144 ~~~~~~~~~~~~~~~~~~--~~fD~Ii~~dv---l~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          144 VPYRWGDSPDSLQRCTGL--QRFQVVLLADL---LSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             EECCTTSCTHHHHHHHSC--SSBSEEEEESC---CSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             EEecCCCccHHHHhhccC--CCCCEEEEeCc---ccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            76554331  11    22  68999998554   3344567888999999999   9  997653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.30  E-value=6e-12  Score=120.57  Aligned_cols=106  Identities=16%  Similarity=0.168  Sum_probs=82.5

Q ss_pred             cCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCcee
Q psy14674         73 NKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKV  148 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~  148 (519)
                      ...+.++.+|||+|||+|.++..+++.  +..+|+|+|+| .|++.+.++++.+   .+++++.+|+.+.. ++...++|
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~  148 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMV  148 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCE
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcE
Confidence            345678899999999999999999887  34699999999 5888888888775   45999999998742 22112789


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      |+|+++..     .......++.++.++|||||.++..
T Consensus       149 D~V~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          149 DVIFADVA-----QPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             EEEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEcCC-----CccHHHHHHHHHHHHcCCCeEEEEE
Confidence            99999654     2223455677788999999999874

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.30  E-value=9.5e-12  Score=129.39  Aligned_cols=113  Identities=19%  Similarity=0.183  Sum_probs=85.8

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHH-------HHHHHHCCCC-CcEEEEEceeeEe
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYA-------KEIVDKNNLS-DVVTILKGKVEEV  139 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A-------~~~~~~~~~~-~~i~~~~~d~~~~  139 (519)
                      ++....+.++.+|||||||+|.++..+|+. |..+|+|||++ .+++.|       +++++..|+. ++++++++|....
T Consensus       234 ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~  313 (433)
T 1u2z_A          234 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD  313 (433)
T ss_dssp             HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT
T ss_pred             HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccc
Confidence            334456778999999999999999999986 77799999999 588888       8899888854 5699999754321


Q ss_pred             --ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        140 --ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       140 --~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                        .++...++||+|+++...    ....+..++.++.+.|||||.++..
T Consensus       314 ~~~~~~~~~~FDvIvvn~~l----~~~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          314 NNRVAELIPQCDVILVNNFL----FDEDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             CHHHHHHGGGCSEEEECCTT----CCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             ccccccccCCCCEEEEeCcc----ccccHHHHHHHHHHhCCCCeEEEEe
Confidence              111001689999986432    2245667788999999999999855

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.30  E-value=8.3e-12  Score=119.15  Aligned_cols=103  Identities=19%  Similarity=0.262  Sum_probs=82.1

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ......++.+|||||||+|.++..+++.+ .+|+|+|++ .+++.|+++...++   +++++.+|+.+...+.  ++||+
T Consensus        64 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~--~~fD~  137 (231)
T 1vbf_A           64 DELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEE--KPYDR  137 (231)
T ss_dssp             HHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGG--CCEEE
T ss_pred             HhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccC--CCccE
Confidence            33456788999999999999999999987 699999999 69999999988766   5999999998632222  78999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |++....+++.         ..+.++|+|||.++.....
T Consensus       138 v~~~~~~~~~~---------~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          138 VVVWATAPTLL---------CKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             EEESSBBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred             EEECCcHHHHH---------HHHHHHcCCCcEEEEEEcC
Confidence            99977644332         2456899999999866543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.29  E-value=8.2e-13  Score=124.06  Aligned_cols=108  Identities=18%  Similarity=0.085  Sum_probs=66.4

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC---CCceeeEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF---GIQKVDII  151 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~~~D~I  151 (519)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+| .+++.|++++..++.  +++++++|+.+ .++.   ..++||+|
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~-~~~~~~~~~~~fD~i  105 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIE-WLIERAERGRPWHAI  105 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHH-HHHHHHHTTCCBSEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHh-hhhhhhhccCcccEE
Confidence            678899999999999999999884 3499999999 699999999988877  58999999887 3321   11689999


Q ss_pred             EEecccccccc-----------------------chhHHHHHHHHhcccCcCeE-EEccC
Q psy14674        152 ISEWMGYCLFY-----------------------ESMLDTVLYARDKWLATNGL-LFPDK  187 (519)
Q Consensus       152 vs~~~~~~l~~-----------------------e~~l~~~l~~~~r~LkpgG~-lip~~  187 (519)
                      ++++..+....                       ...+..++..+.++|||||. ++...
T Consensus       106 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  165 (215)
T 4dzr_A          106 VSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV  165 (215)
T ss_dssp             EECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred             EECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            99764321110                       01126778888899999999 65443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.29  E-value=2.4e-12  Score=122.83  Aligned_cols=90  Identities=17%  Similarity=0.185  Sum_probs=73.9

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceee-EeecC-CCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVE-EVELP-FGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~-~~~~~-~~~~~~D~Ivs  153 (519)
                      .++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|+++      ..+++++++|+. .++++ .  ++||+|++
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~~~~--~~fD~v~~  117 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN------APHADVYEWNGKGELPAGLG--APFGLIVS  117 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCTTCC--CCEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCCcCC--CCEEEEEe
Confidence            5788999999999999999999865 99999999 699999987      124899999994 44444 3  79999998


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ..         ....++.++.++|||||.++
T Consensus       118 ~~---------~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          118 RR---------GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             ES---------CCSGGGGGHHHHEEEEEEEE
T ss_pred             CC---------CHHHHHHHHHHHcCCCcEEE
Confidence            62         23445667789999999998

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.29  E-value=5.1e-12  Score=121.01  Aligned_cols=107  Identities=18%  Similarity=0.197  Sum_probs=87.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-ecCCCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-ELPFGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~D~Ivs  153 (519)
                      .++.+|||+|||+|..+..+++. +..+|+++|++ .+++.|+++++.+++.++++++.+|+.+. +.....++||+|++
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  132 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI  132 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence            46789999999999999999887 35699999999 69999999999999988899999998774 21100268999998


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ....      .....++..+.++|+|||.++.+...
T Consensus       133 ~~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~  162 (233)
T 2gpy_A          133 DAAK------GQYRRFFDMYSPMVRPGGLILSDNVL  162 (233)
T ss_dssp             EGGG------SCHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred             CCCH------HHHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            7642      24567788889999999999987544

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.29  E-value=5.3e-12  Score=128.96  Aligned_cols=120  Identities=18%  Similarity=0.107  Sum_probs=95.3

Q ss_pred             HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC
Q psy14674         67 RNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG--AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF  143 (519)
Q Consensus        67 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~  143 (519)
                      ..+++......++.+|||+|||+|.++..++..+  ..+|+|+|++ .|++.|+++++.+|+. +++++++|+.+++.+.
T Consensus       192 a~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~~~  270 (354)
T 3tma_A          192 AQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRFF  270 (354)
T ss_dssp             HHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGGTC
T ss_pred             HHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcccc
Confidence            3445555667788999999999999999998863  4699999999 6999999999999998 7999999999876654


Q ss_pred             CCceeeEEEEeccccc-cc----cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        144 GIQKVDIIISEWMGYC-LF----YESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~-l~----~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                        +.||+|++++.... +.    .......++..+.++|||||.++.....
T Consensus       271 --~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          271 --PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             --CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             --CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence              67899999875221 11    1123467888899999999998866554

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.29  E-value=7.7e-12  Score=121.25  Aligned_cols=108  Identities=13%  Similarity=0.146  Sum_probs=87.5

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-e-cCC---CCcee
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-E-LPF---GIQKV  148 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~-~~~---~~~~~  148 (519)
                      .++++|||||||+|..++.++++ + ..+|+++|++ ++++.|+++++..++.++|+++.+|+.+. + +..   ..++|
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            46789999999999999999886 3 4699999999 79999999999999988899999998764 1 210   01789


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASL  190 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~  190 (519)
                      |+|+++..      ......++..+.++|||||+++.+...+
T Consensus       158 D~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~  193 (247)
T 1sui_A          158 DFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDNTLW  193 (247)
T ss_dssp             SEEEECSC------STTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred             EEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence            99998643      1235667888889999999999877653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.28  E-value=6.3e-12  Score=115.95  Aligned_cols=102  Identities=23%  Similarity=0.331  Sum_probs=82.7

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      +.++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.|+++..      +++++.+|+.+++++.  ++||+|++.
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~~~~~--~~~D~i~~~  114 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQISE--TDFDLIVSA  114 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTSCCCC--CCEEEEEEC
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC------CCcEEEcccccCCCCC--CceeEEEEC
Confidence            45788999999999999999999865 99999999 69999988752      3789999998766554  789999997


Q ss_pred             -ccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        155 -WMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       155 -~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                       .+.+++ .......++..+.++|+|||.++...
T Consensus       115 ~~~~~~~-~~~~~~~~l~~~~~~l~~~G~l~~~~  147 (195)
T 3cgg_A          115 GNVMGFL-AEDGREPALANIHRALGADGRAVIGF  147 (195)
T ss_dssp             CCCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcHHhhc-ChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence             444433 23456788999999999999998643

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.28  E-value=1.2e-11  Score=116.75  Aligned_cols=106  Identities=22%  Similarity=0.181  Sum_probs=83.1

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKSGA--ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      ......++.+|||||||+|.++..+++.+.  .+|+++|++ .+++.|++++..+++.+ ++++.+|+... ++. .++|
T Consensus        71 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~~~-~~~f  147 (215)
T 2yxe_A           71 ELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIVGDGTLG-YEP-LAPY  147 (215)
T ss_dssp             HHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEESCGGGC-CGG-GCCE
T ss_pred             HhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcccC-CCC-CCCe
Confidence            334567889999999999999999988742  699999999 69999999998888765 99999998542 221 2689


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+|++....+++.         +.+.++|||||.++.....
T Consensus       148 D~v~~~~~~~~~~---------~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          148 DRIYTTAAGPKIP---------EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             EEEEESSBBSSCC---------HHHHHTEEEEEEEEEEESS
T ss_pred             eEEEECCchHHHH---------HHHHHHcCCCcEEEEEECC
Confidence            9999977644332         3556899999999866544

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.28  E-value=8.1e-12  Score=120.19  Aligned_cols=110  Identities=15%  Similarity=0.201  Sum_probs=80.6

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH------CCCCCcEEEEEceeeE-ee--cCCC
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDK------NNLSDVVTILKGKVEE-VE--LPFG  144 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~------~~~~~~i~~~~~d~~~-~~--~~~~  144 (519)
                      ..++.+|||||||+|.++..+|+. +...|+|||+| .|++.|+++++.      .++. ++.++++|+.+ ++  ++. 
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~-nv~~~~~d~~~~l~~~~~~-  121 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQ-NIACLRSNAMKHLPNFFYK-  121 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCT-TEEEEECCTTTCHHHHCCT-
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCC-eEEEEECcHHHhhhhhCCC-
Confidence            346679999999999999999887 45699999999 699999988764      3444 59999999986 44  444 


Q ss_pred             CceeeEEEEeccccccc--cc---hhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        145 IQKVDIIISEWMGYCLF--YE---SMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~--~e---~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                       +++|.|++........  +.   -....++..+.++|||||.++....
T Consensus       122 -~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td  169 (235)
T 3ckk_A          122 -GQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD  169 (235)
T ss_dssp             -TCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             -cCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence             7899998754321110  00   0124678889999999999986543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.27  E-value=7.4e-12  Score=138.63  Aligned_cols=111  Identities=16%  Similarity=0.188  Sum_probs=92.6

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCC-CcEEEEEceeeEe-ecCCCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS-DVVTILKGKVEEV-ELPFGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~-~~i~~~~~d~~~~-~~~~~~~~~D~Ivs  153 (519)
                      .+|++|||+|||+|.+++.+++.|+.+|++||+| .+++.|+++++.|++. ++++++++|+.++ ....  ++||+|++
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~--~~fD~Ii~  615 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREAN--EQFDLIFI  615 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCC--CCEEEEEE
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcC--CCccEEEE
Confidence            3689999999999999999999999899999999 6999999999999997 6899999999874 2222  78999999


Q ss_pred             eccccc--------cccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        154 EWMGYC--------LFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~--------l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++..+.        .........++..+.++|+|||+++.+.+.
T Consensus       616 DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          616 DPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            875321        222345677888889999999999976655

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.27  E-value=2.7e-12  Score=124.40  Aligned_cols=107  Identities=14%  Similarity=0.077  Sum_probs=82.6

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc---CCCEEEEEech-HHHHHHHHHHHHC---CCCCc---------------------
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS---GAARVIGIECS-NIVEYAKEIVDKN---NLSDV---------------------  128 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~---g~~~V~gvD~s-~~~~~A~~~~~~~---~~~~~---------------------  128 (519)
                      .++.+|||+|||+|.++..+++.   +..+|+|+|+| .+++.|++++..+   ++.++                     
T Consensus        50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (250)
T 1o9g_A           50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  129 (250)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence            46779999999999999988875   34589999999 6999999998876   55433                     


Q ss_pred             ----EE-------------EEEceeeEeec-----CCCCceeeEEEEecccccccc------chhHHHHHHHHhcccCcC
Q psy14674        129 ----VT-------------ILKGKVEEVEL-----PFGIQKVDIIISEWMGYCLFY------ESMLDTVLYARDKWLATN  180 (519)
Q Consensus       129 ----i~-------------~~~~d~~~~~~-----~~~~~~~D~Ivs~~~~~~l~~------e~~l~~~l~~~~r~Lkpg  180 (519)
                          ++             ++++|+.+...     +.  ++||+|++++.......      ......++..+.++|+||
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  207 (250)
T 1o9g_A          130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAG--SAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH  207 (250)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTT--CCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred             hhhhhhhhccccccccccceeecccccccccccccCC--CCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence                66             99999876421     21  48999999875332221      245668889999999999


Q ss_pred             eEEEc
Q psy14674        181 GLLFP  185 (519)
Q Consensus       181 G~lip  185 (519)
                      |+++.
T Consensus       208 G~l~~  212 (250)
T 1o9g_A          208 AVIAV  212 (250)
T ss_dssp             CEEEE
T ss_pred             cEEEE
Confidence            99986

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.27  E-value=8.2e-12  Score=122.83  Aligned_cols=104  Identities=20%  Similarity=0.229  Sum_probs=85.5

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ..+.++.+|||+|||+|.+++.+|+. +..+|+|+|++ .+++.|+++++.|++.+ +.++++|+.+++ .  .++||+|
T Consensus       115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~-~~~~~~d~~~~~-~--~~~~D~V  190 (272)
T 3a27_A          115 FISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNN-VIPILADNRDVE-L--KDVADRV  190 (272)
T ss_dssp             TSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSS-EEEEESCGGGCC-C--TTCEEEE
T ss_pred             HhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEECChHHcC-c--cCCceEE
Confidence            34678899999999999999999987 46699999999 69999999999999875 889999998862 2  2789999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      +++...       ....++..+.+.|+|||+++....
T Consensus       191 i~d~p~-------~~~~~l~~~~~~LkpgG~l~~s~~  220 (272)
T 3a27_A          191 IMGYVH-------KTHKFLDKTFEFLKDRGVIHYHET  220 (272)
T ss_dssp             EECCCS-------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCcc-------cHHHHHHHHHHHcCCCCEEEEEEc
Confidence            998753       234456666789999999885543

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.27  E-value=9.5e-12  Score=129.06  Aligned_cols=113  Identities=19%  Similarity=0.186  Sum_probs=90.9

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC-CCcEEEEEceeeEeec--CCCCceeeEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL-SDVVTILKGKVEEVEL--PFGIQKVDIII  152 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~-~~~i~~~~~d~~~~~~--~~~~~~~D~Iv  152 (519)
                      .++++|||+|||+|.+++.+++.|+++|+|+|+| ++++.|+++++.|++ .++++++++|+.++..  ....++||+|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            4788999999999999999999988899999999 699999999999999 6679999999987521  10116899999


Q ss_pred             Eeccccc------cccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYC------LFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~------l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +++....      ......+..++..+.++|+|||+++...+.
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  341 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS  341 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            9875321      111244667778888999999999977665

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.27  E-value=9.3e-12  Score=119.91  Aligned_cols=107  Identities=15%  Similarity=0.037  Sum_probs=85.1

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCC---Cceee
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFG---IQKVD  149 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~---~~~~D  149 (519)
                      ..+.++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|+++..    ..+++++++|+.++..+..   ...||
T Consensus        52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~d  126 (245)
T 3ggd_A           52 LLFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHSEIGDA  126 (245)
T ss_dssp             TTSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred             hccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccccccccccCcc
Confidence            3467788999999999999999999877 99999999 69999998762    2359999999987643310   02489


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +|++..+.+++.. .....++.++.++|||||.++..
T Consensus       127 ~v~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~  162 (245)
T 3ggd_A          127 NIYMRTGFHHIPV-EKRELLGQSLRILLGKQGAMYLI  162 (245)
T ss_dssp             EEEEESSSTTSCG-GGHHHHHHHHHHHHTTTCEEEEE
T ss_pred             EEEEcchhhcCCH-HHHHHHHHHHHHHcCCCCEEEEE
Confidence            9999888776643 35678899999999999986643

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.27  E-value=1.4e-11  Score=117.32  Aligned_cols=105  Identities=20%  Similarity=0.288  Sum_probs=81.5

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec-CCCCceee
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL-PFGIQKVD  149 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~D  149 (519)
                      ..+.++.+|||+|||+|.++..+++. | ..+|+|+|+| .|++.++++++.+   .+++++++|+.+... ....++||
T Consensus        69 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D  145 (227)
T 1g8a_A           69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             cCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCce
Confidence            34678899999999999999999876 4 3699999999 6999999988765   469999999987421 11116899


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +|+++..     .......++..+.++|||||.++..
T Consensus       146 ~v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          146 VIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCC-----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            9998654     2223445588889999999998865

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.26  E-value=4.5e-12  Score=125.57  Aligned_cols=110  Identities=15%  Similarity=0.132  Sum_probs=80.2

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCC-----------------CC------------
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNN-----------------LS------------  126 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~-----------------~~------------  126 (519)
                      .++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|+++++...                 ..            
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            4778999999999997666665445599999999 69999988654321                 00            


Q ss_pred             CcEEEEEceeeE-eecCC---CCceeeEEEEecccccccc-chhHHHHHHHHhcccCcCeEEEcc
Q psy14674        127 DVVTILKGKVEE-VELPF---GIQKVDIIISEWMGYCLFY-ESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       127 ~~i~~~~~d~~~-~~~~~---~~~~~D~Ivs~~~~~~l~~-e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ..++++.+|+.+ ++++.   ..++||+|++..+.+++.. ...+..++.++.++|||||.++..
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~  214 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI  214 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            125677788876 33221   1256999999887555332 346788899999999999999875

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.26  E-value=1.3e-11  Score=119.65  Aligned_cols=109  Identities=27%  Similarity=0.247  Sum_probs=87.8

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHC-CCCCcEEEEEceeeEeecCCCC
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKN-NLSDVVTILKGKVEEVELPFGI  145 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~  145 (519)
                      +.....+.++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+ + .++++++.+|+.+.+++.  
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~~--  164 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELEE--  164 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCCT--
T ss_pred             HHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCCC--
Confidence            334456788999999999999999999987 4 5699999999 6999999999887 7 456999999998765554  


Q ss_pred             ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++||+|+++..        ....++..+.++|+|||.++.....
T Consensus       165 ~~~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~~~  200 (258)
T 2pwy_A          165 AAYDGVALDLM--------EPWKVLEKAALALKPDRFLVAYLPN  200 (258)
T ss_dssp             TCEEEEEEESS--------CGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred             CCcCEEEECCc--------CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            78999998532        2335577788999999998865443

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.26  E-value=1.9e-11  Score=117.66  Aligned_cols=108  Identities=13%  Similarity=0.121  Sum_probs=87.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCC---CCcee
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPF---GIQKV  148 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~---~~~~~  148 (519)
                      .++++|||||||+|..+..++++ + ..+|+++|++ ++++.|+++++..|+.++++++.+|+.+.  .+..   ..++|
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            46789999999999999999886 3 5699999999 69999999999999988899999998764  1210   02789


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASL  190 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~  190 (519)
                      |+|+++..      ......+++.+.++|+|||+++.+...+
T Consensus       149 D~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~~~~  184 (237)
T 3c3y_A          149 DFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDNTLW  184 (237)
T ss_dssp             EEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred             CEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence            99998642      2345677888889999999999887653

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.25  E-value=9.7e-12  Score=128.98  Aligned_cols=113  Identities=27%  Similarity=0.259  Sum_probs=91.0

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--CCCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--PFGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~~~D~Ivs  153 (519)
                      .++++|||+|||+|.+++.+++.|+++|+|+|+| .+++.|+++++.|++.++++++++|+.+...  ....++||+|++
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            3788999999999999999999888899999999 6999999999999997679999999987521  101268999999


Q ss_pred             ecccccccc------chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        154 EWMGYCLFY------ESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~~------e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++..+....      ......++..+.++|+|||.++...++
T Consensus       296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  337 (396)
T 2as0_A          296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  337 (396)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            875322111      134566778888999999999877666

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.25  E-value=2.1e-11  Score=124.22  Aligned_cols=115  Identities=10%  Similarity=0.088  Sum_probs=94.0

Q ss_pred             HHHhcCCCCC-CCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCC
Q psy14674         69 SMYHNKHLFK-GKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFG  144 (519)
Q Consensus        69 ai~~~~~~~~-~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~  144 (519)
                      .++......+ +.+|||||||+|.++..+++. +..+++++|+.++++.|++++...++.++++++.+|+.+.+  .+  
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--  246 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG--  246 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT--
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC--
Confidence            3444445556 889999999999999988876 45699999997799999999999999889999999998765  44  


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                       +.||+|++..+.|++.. .....+++.+.+.|+|||.++...
T Consensus       247 -~~~D~v~~~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          247 -GAADVVMLNDCLHYFDA-REAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             -CCEEEEEEESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -CCccEEEEecccccCCH-HHHHHHHHHHHHHcCCCCEEEEEE
Confidence             67999999887665533 345788999999999999987543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.25  E-value=2.3e-11  Score=122.90  Aligned_cols=107  Identities=19%  Similarity=0.248  Sum_probs=89.2

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||||||+|.++..+++. +..+++++|++.+++.|++++...++.++++++.+|+.+.+++   +.||+|++..
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~v~~~~  240 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYG---NDYDLVLLPN  240 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC---SCEEEEEEES
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCC---CCCcEEEEcc
Confidence            67789999999999999988886 4459999999999999999999988888899999999876555   4599999977


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +.+++.. .....+++.+.+.|+|||.++...
T Consensus       241 ~l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e  271 (335)
T 2r3s_A          241 FLHHFDV-ATCEQLLRKIKTALAVEGKVIVFD  271 (335)
T ss_dssp             CGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhccCCH-HHHHHHHHHHHHhCCCCcEEEEEe
Confidence            7555432 345678899999999999777543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.25  E-value=1.4e-11  Score=117.35  Aligned_cols=108  Identities=18%  Similarity=0.143  Sum_probs=87.2

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCC--cee
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGI--QKV  148 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~~  148 (519)
                      ..++++|||||||+|..+..+++. + ..+|+++|++ ++++.|+++++.+++.++++++.+|+.+.  .++...  ++|
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            356789999999999999999986 3 5699999999 79999999999999988899999998764  222111  579


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+|+++..      ......++..+.++|+|||.++.+...
T Consensus       147 D~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~  181 (229)
T 2avd_A          147 DVAVVDAD------KENCSAYYERCLQLLRPGGILAVLRVL  181 (229)
T ss_dssp             EEEEECSC------STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             cEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            99998653      223556788888999999999987655

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.25  E-value=1.4e-11  Score=121.33  Aligned_cols=109  Identities=18%  Similarity=0.183  Sum_probs=88.9

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      +.....+.++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+++.++++++.+|+.+. ++.  +
T Consensus       104 i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~--~  180 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDE--K  180 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSC--C
T ss_pred             HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccC--C
Confidence            334456778999999999999999999887 4 5699999999 69999999999998877899999999875 554  6


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +||+|+++..        ....++..+.++|+|||.++.....
T Consensus       181 ~~D~V~~~~~--------~~~~~l~~~~~~L~pgG~l~~~~~~  215 (277)
T 1o54_A          181 DVDALFLDVP--------DPWNYIDKCWEALKGGGRFATVCPT  215 (277)
T ss_dssp             SEEEEEECCS--------CGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             ccCEEEECCc--------CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            8999998542        2335577778999999999866543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.25  E-value=1.9e-11  Score=117.15  Aligned_cols=108  Identities=19%  Similarity=0.212  Sum_probs=87.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCC--ceee
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGI--QKVD  149 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~~D  149 (519)
                      .++++|||||||+|..+..+++. + ..+|+++|++ ++++.|+++++.+++.++++++.+|+.+.  .++...  ++||
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            46789999999999999999986 3 4599999999 69999999999999888899999998653  222211  5799


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASL  190 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~  190 (519)
                      +|+++..      ......+++.+.++|+|||.++.+...+
T Consensus       151 ~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~  185 (232)
T 3cbg_A          151 LIFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVLW  185 (232)
T ss_dssp             EEEECSC------GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred             EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            9998653      1345667888889999999999887663

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.25  E-value=1.5e-11  Score=121.15  Aligned_cols=112  Identities=13%  Similarity=0.081  Sum_probs=89.6

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec----CCCCce
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL----PFGIQK  147 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~  147 (519)
                      ...++.+|||+|||+|..+..+++.  +..+|+|+|++ .+++.++++++.+|+. +++++++|+.++..    +.  ++
T Consensus        80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~--~~  156 (274)
T 3ajd_A           80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNE--IF  156 (274)
T ss_dssp             CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTT--CC
T ss_pred             CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhcc--cc
Confidence            4567899999999999999988874  44799999999 6999999999999987 59999999987643    12  78


Q ss_pred             eeEEEEeccccccc---------------cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        148 VDIIISEWMGYCLF---------------YESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~---------------~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ||+|+++.......               .......++..+.++|||||.++...++
T Consensus       157 fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs  213 (274)
T 3ajd_A          157 FDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS  213 (274)
T ss_dssp             EEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            99999985422211               0123467888889999999999988887

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.24  E-value=1.1e-11  Score=120.42  Aligned_cols=107  Identities=20%  Similarity=0.164  Sum_probs=77.3

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe---ecCCC-CceeeEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV---ELPFG-IQKVDII  151 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~---~~~~~-~~~~D~I  151 (519)
                      ++.+|||+|||+|.++..+++. +..+|+|+|+| .|++.|+++++.+++.++++++++|+.+.   .++.. +++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            5789999999999998888765 34599999999 69999999999999988899999998762   23311 1589999


Q ss_pred             EEeccccccccc------------hhHHHHHHHHhcccCcCeEEE
Q psy14674        152 ISEWMGYCLFYE------------SMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       152 vs~~~~~~l~~e------------~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ++++..+....+            .....++..+.++|||||.+.
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~  189 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELE  189 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHH
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEE
Confidence            998764332200            011245667789999999765

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.24  E-value=1.5e-11  Score=121.14  Aligned_cols=109  Identities=13%  Similarity=0.128  Sum_probs=85.1

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHC-CCCCcEEEEEceeeEeecCCC
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKN-NLSDVVTILKGKVEEVELPFG  144 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~-~~~~~i~~~~~d~~~~~~~~~  144 (519)
                      .+.....+.++.+|||+|||+|.++..+++.  +..+|+|+|++ .+++.|+++++.+ |. ++++++.+|+.+ .++. 
T Consensus       101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~-~~~~-  177 (275)
T 1yb2_A          101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIAD-FISD-  177 (275)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTT-CCCS-
T ss_pred             HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhc-cCcC-
Confidence            3444456778899999999999999999886  35699999999 6999999999988 74 459999999987 3443 


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                       ++||+|+++..        ....++..+.++|||||.++.....
T Consensus       178 -~~fD~Vi~~~~--------~~~~~l~~~~~~LkpgG~l~i~~~~  213 (275)
T 1yb2_A          178 -QMYDAVIADIP--------DPWNHVQKIASMMKPGSVATFYLPN  213 (275)
T ss_dssp             -CCEEEEEECCS--------CGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             -CCccEEEEcCc--------CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence             78999998432        2345678888999999999866554

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.24  E-value=1.8e-11  Score=133.82  Aligned_cols=107  Identities=18%  Similarity=0.181  Sum_probs=86.2

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHC------CCCCcEEEEEceeeEeecCCCCce
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGA--ARVIGIECS-NIVEYAKEIVDKN------NLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~A~~~~~~~------~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .++.+|||||||+|.++..+++.+.  .+|+|+|+| .|++.|++++...      ++. +++++++|+.+++.+.  ++
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~-nVefiqGDa~dLp~~d--~s  796 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK-SATLYDGSILEFDSRL--HD  796 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS-EEEEEESCTTSCCTTS--CS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC-ceEEEECchHhCCccc--CC
Confidence            4788999999999999999999863  599999999 6999999876532      443 6999999999877665  89


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      ||+|++..+.+++.. .....++..+.++|||| .++....
T Consensus       797 FDlVV~~eVLeHL~d-p~l~~~L~eI~RvLKPG-~LIISTP  835 (950)
T 3htx_A          797 VDIGTCLEVIEHMEE-DQACEFGEKVLSLFHPK-LLIVSTP  835 (950)
T ss_dssp             CCEEEEESCGGGSCH-HHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred             eeEEEEeCchhhCCh-HHHHHHHHHHHHHcCCC-EEEEEec
Confidence            999999877666543 33556788999999999 5554443

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.24  E-value=3.2e-12  Score=121.00  Aligned_cols=107  Identities=14%  Similarity=0.065  Sum_probs=77.0

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHH----HHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEI----VDKNNLSDVVTILKGKVEEVELPFGIQKVD  149 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~----~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D  149 (519)
                      ..++.+|||||||+|.++..+++.. ..+|+|+|+| +|++.+.+.    ....++. +++++++|+.+++++.  +. |
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~--~~-d  100 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERLPPLS--GV-G  100 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTCCSCC--CE-E
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhCCCCC--CC-C
Confidence            4578899999999999999999873 5699999999 677754333    3345554 5999999999876654  55 7


Q ss_pred             EEEEeccccccc--cchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        150 IIISEWMGYCLF--YESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       150 ~Ivs~~~~~~l~--~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      .|+.........  +......++.++.++|||||.++..
T Consensus       101 ~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A          101 ELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             EEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            776322211110  1122367889999999999999874

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.23  E-value=2e-11  Score=120.15  Aligned_cols=110  Identities=27%  Similarity=0.376  Sum_probs=87.8

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHC-C-CCCcEEEEEceeeEeecCCC
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKN-N-LSDVVTILKGKVEEVELPFG  144 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~-~-~~~~i~~~~~d~~~~~~~~~  144 (519)
                      ++....+.++.+|||+|||+|.++..+++. + ..+|+++|++ ++++.|+++++.+ + +.++++++++|+.+..++. 
T Consensus        91 i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~-  169 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPD-  169 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCT-
T ss_pred             HHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCC-
Confidence            334456788999999999999999999885 3 5699999999 6999999999887 4 4567999999998865554 


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                       ++||+|+++..        ....++..+.++|+|||.++....+
T Consensus       170 -~~~D~v~~~~~--------~~~~~l~~~~~~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          170 -GSVDRAVLDML--------APWEVLDAVSRLLVAGGVLMVYVAT  205 (280)
T ss_dssp             -TCEEEEEEESS--------CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             -CceeEEEECCc--------CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence             78999998542        2335577788999999999865544

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.23  E-value=4.8e-11  Score=122.49  Aligned_cols=113  Identities=21%  Similarity=0.170  Sum_probs=90.6

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      +.....+.++.+|||||||+|.++..+++.. ..+++++|+.++++.|++++..+++.++++++.+|+.+ .+|   ..|
T Consensus       174 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~---~~~  249 (374)
T 1qzz_A          174 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLP---VTA  249 (374)
T ss_dssp             HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS---CCE
T ss_pred             HHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCC---CCC
Confidence            3333455678899999999999999888873 45999999955999999999999998889999999875 455   359


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      |+|++..+.+++.. .....+++.+.+.|+|||.++...
T Consensus       250 D~v~~~~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e  287 (374)
T 1qzz_A          250 DVVLLSFVLLNWSD-EDALTILRGCVRALEPGGRLLVLD  287 (374)
T ss_dssp             EEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEEeccccCCCH-HHHHHHHHHHHHhcCCCcEEEEEe
Confidence            99999887665433 234578899999999999887543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.23  E-value=2.5e-11  Score=124.39  Aligned_cols=107  Identities=13%  Similarity=0.134  Sum_probs=88.9

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~Ivs  153 (519)
                      ..+.+|||||||+|.++..+++. +..+++++|+.++++.|++++...++.++++++.+|+.+..  +|   ++||+|++
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p---~~~D~v~~  254 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP---TGFDAVWM  254 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC---CCCSEEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCC---CCcCEEEE
Confidence            35689999999999999988876 45599999996699999999998888889999999998753  45   68999999


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ..+.|++.. .....+++++.+.|||||.++...
T Consensus       255 ~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          255 SQFLDCFSE-EEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             ESCSTTSCH-HHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             echhhhCCH-HHHHHHHHHHHHhcCCCcEEEEEe
Confidence            887665543 345678899999999999987543

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.23  E-value=3.6e-11  Score=121.52  Aligned_cols=110  Identities=14%  Similarity=0.016  Sum_probs=90.0

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ....++.+|||||||+|.++..+++. +..+++++|+.++++.|++++...++.++++++.+|+.+ ++|   .+||+|+
T Consensus       165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p---~~~D~v~  240 (332)
T 3i53_A          165 YDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLP---AGAGGYV  240 (332)
T ss_dssp             SCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCC---CSCSEEE
T ss_pred             CCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCC---CCCcEEE
Confidence            34455789999999999999988875 456899999966999999999999998899999999973 455   4799999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      +..+.|++.. .....+++++.+.|+|||.++....
T Consensus       241 ~~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~  275 (332)
T 3i53_A          241 LSAVLHDWDD-LSAVAILRRCAEAAGSGGVVLVIEA  275 (332)
T ss_dssp             EESCGGGSCH-HHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             EehhhccCCH-HHHHHHHHHHHHhcCCCCEEEEEee
Confidence            9887665543 2357789999999999999986443

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.23  E-value=6.8e-11  Score=113.10  Aligned_cols=105  Identities=17%  Similarity=0.221  Sum_probs=76.9

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC-CCCceee
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP-FGIQKVD  149 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~D  149 (519)
                      ..+.+|.+|||+|||+|.++..+|+. | .++|+|+|+| .|++.+.+..+..   .++.++.+|+...... ...++||
T Consensus        72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~~~~~~D  148 (232)
T 3id6_C           72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKSVVENVD  148 (232)
T ss_dssp             CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTTTCCCEE
T ss_pred             cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhccccceE
Confidence            44788999999999999999998876 3 5699999999 5876555555443   3599999998764321 1126899


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +|+++...     ......+...+.++|||||.++..
T Consensus       149 ~I~~d~a~-----~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          149 VLYVDIAQ-----PDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             EEEECCCC-----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEecCCC-----hhHHHHHHHHHHHhCCCCeEEEEE
Confidence            99998542     223344455666799999999865

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.23  E-value=2.5e-11  Score=116.97  Aligned_cols=107  Identities=21%  Similarity=0.140  Sum_probs=86.8

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ....+.++.+|||+|||+|.++..+++. ..+|+++|++ ++++.|+++.+.+++.++++++.+|+.+..++.  ++||+
T Consensus        85 ~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~  161 (248)
T 2yvl_A           85 LKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE--GIFHA  161 (248)
T ss_dssp             HHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCT--TCBSE
T ss_pred             HhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCC--CcccE
Confidence            3456678899999999999999999988 5699999999 699999999999998777999999988743243  68999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+++..        ....++..+.++|+|||.++.....
T Consensus       162 v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          162 AFVDVR--------EPWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             EEECSS--------CGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             EEECCc--------CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            998532        2334567778999999999865543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.23  E-value=3.7e-11  Score=114.33  Aligned_cols=104  Identities=26%  Similarity=0.283  Sum_probs=81.8

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc-CC-CEEEEEech-HHHHHHHHHHHHCCC----CCcEEEEEceeeEeecCCCCce
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS-GA-ARVIGIECS-NIVEYAKEIVDKNNL----SDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~gvD~s-~~~~~A~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .+.++.+|||+|||+|.++..+++. |. .+|+|+|++ .+++.|++++..++.    .++++++.+|+.....+.  ++
T Consensus        74 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~  151 (226)
T 1i1n_A           74 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEE--AP  151 (226)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGG--CC
T ss_pred             hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccC--CC
Confidence            3668899999999999999998876 43 499999999 699999999988764    346999999987543333  68


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ||+|++......+         +..+.++|||||.++....+
T Consensus       152 fD~i~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          152 YDAIHVGAAAPVV---------PQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEEEEECSBBSSC---------CHHHHHTEEEEEEEEEEESC
T ss_pred             cCEEEECCchHHH---------HHHHHHhcCCCcEEEEEEec
Confidence            9999987653222         34567899999999876554

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.23  E-value=1.9e-11  Score=123.90  Aligned_cols=103  Identities=21%  Similarity=0.304  Sum_probs=79.0

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-CC-CEEEEEech-HHHHHHHHHHHHC-------C---CCCcEEEEEceeeEe-
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-GA-ARVIGIECS-NIVEYAKEIVDKN-------N---LSDVVTILKGKVEEV-  139 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~gvD~s-~~~~~A~~~~~~~-------~---~~~~i~~~~~d~~~~-  139 (519)
                      ..+.++.+|||+|||+|.++..+++. |. .+|+|+|++ .+++.|+++++..       +   ..++++++.+|+.+. 
T Consensus       101 l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~  180 (336)
T 2b25_A          101 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT  180 (336)
T ss_dssp             HTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred             cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc
Confidence            45678999999999999999999987 54 799999999 6999999998852       2   235699999999875 


Q ss_pred             -ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        140 -ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       140 -~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                       .++.  ++||+|+++....        ..++..+.++|+|||.++..
T Consensus       181 ~~~~~--~~fD~V~~~~~~~--------~~~l~~~~~~LkpgG~lv~~  218 (336)
T 2b25_A          181 EDIKS--LTFDAVALDMLNP--------HVTLPVFYPHLKHGGVCAVY  218 (336)
T ss_dssp             ---------EEEEEECSSST--------TTTHHHHGGGEEEEEEEEEE
T ss_pred             cccCC--CCeeEEEECCCCH--------HHHHHHHHHhcCCCcEEEEE
Confidence             3343  6899999865311        12567788999999999843

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.23  E-value=7.5e-11  Score=121.10  Aligned_cols=114  Identities=18%  Similarity=0.158  Sum_probs=92.3

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .+.......++.+|||||||+|.++..+++. +..+++++|+.++++.|++++...++.++|+++.+|+. .++|   ..
T Consensus       193 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p---~~  268 (369)
T 3gwz_A          193 QVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFF-ETIP---DG  268 (369)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCC---SS
T ss_pred             HHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCC-CCCC---CC
Confidence            3444455667889999999999999988886 45599999995599999999999999889999999998 3455   47


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ||+|++..+.+++.. .....+++.+.+.|+|||.++...
T Consensus       269 ~D~v~~~~vlh~~~d-~~~~~~L~~~~~~L~pgG~l~i~e  307 (369)
T 3gwz_A          269 ADVYLIKHVLHDWDD-DDVVRILRRIATAMKPDSRLLVID  307 (369)
T ss_dssp             CSEEEEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             ceEEEhhhhhccCCH-HHHHHHHHHHHHHcCCCCEEEEEE
Confidence            999999887665533 234478999999999999988543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.22  E-value=2e-11  Score=116.17  Aligned_cols=103  Identities=24%  Similarity=0.280  Sum_probs=81.2

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCC------CEEEEEech-HHHHHHHHHHHHCCC----CCcEEEEEceeeEee---
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGA------ARVIGIECS-NIVEYAKEIVDKNNL----SDVVTILKGKVEEVE---  140 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~------~~V~gvD~s-~~~~~A~~~~~~~~~----~~~i~~~~~d~~~~~---  140 (519)
                      .+.++.+|||||||+|.++..+++...      .+|+|+|++ ++++.|+++++.+++    .++++++.+|+.+..   
T Consensus        77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  156 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE  156 (227)
T ss_dssp             TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred             hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence            467889999999999999999988632      599999999 699999999988773    346999999988643   


Q ss_pred             -cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        141 -LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       141 -~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                       .+.  ++||+|++....+.+         +..+.++|||||.++....
T Consensus       157 ~~~~--~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          157 KKEL--GLFDAIHVGASASEL---------PEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHH--CCEEEEEECSBBSSC---------CHHHHHHEEEEEEEEEEEE
T ss_pred             CccC--CCcCEEEECCchHHH---------HHHHHHhcCCCcEEEEEEc
Confidence             232  689999987653322         3555789999999885543

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.22  E-value=2.6e-11  Score=116.35  Aligned_cols=104  Identities=22%  Similarity=0.254  Sum_probs=81.4

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ..+.++.+|||||||+|.++..+++.+..+|+++|++ .+++.|+++++.+++.+ ++++.+|+. ..++. ..+||+|+
T Consensus        87 l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~-~~~~~-~~~fD~Ii  163 (235)
T 1jg1_A           87 ANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGS-KGFPP-KAPYDVII  163 (235)
T ss_dssp             HTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGG-GCCGG-GCCEEEEE
T ss_pred             cCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCcc-cCCCC-CCCccEEE
Confidence            3567888999999999999999988742699999999 69999999999998876 999999973 23442 14599999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +....+.+.         ..+.+.|+|||.++.....
T Consensus       164 ~~~~~~~~~---------~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          164 VTAGAPKIP---------EPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             ECSBBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred             ECCcHHHHH---------HHHHHhcCCCcEEEEEEec
Confidence            876533222         2456899999999866544

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.22  E-value=2.1e-11  Score=122.45  Aligned_cols=112  Identities=13%  Similarity=0.125  Sum_probs=88.7

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ...++.+|||+|||+|..+..+++.  +..+|+|+|+| .+++.++++++.+|+.+ ++++++|+.++....  ++||+|
T Consensus       115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~-v~~~~~D~~~~~~~~--~~fD~I  191 (315)
T 1ixk_A          115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGELN--VEFDKI  191 (315)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGGGC--CCEEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe-EEEEECChhhccccc--ccCCEE
Confidence            4678899999999999999988875  34699999999 69999999999999864 999999998764332  689999


Q ss_pred             EEeccccc---ccc-c---------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        152 ISEWMGYC---LFY-E---------------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       152 vs~~~~~~---l~~-e---------------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +++.....   +.. .               .....++..+.++|||||.++...++
T Consensus       192 l~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          192 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            99754111   111 0               11257788889999999999988877

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.21  E-value=2.7e-11  Score=114.81  Aligned_cols=99  Identities=29%  Similarity=0.430  Sum_probs=79.0

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||+|||+|.++..+++.| .+|+|+|+| .+++.|+++.        .+++.+|+.+...+..+++||+|++..
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~~~~  101 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVIFGD  101 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEEEES
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEEECC
Confidence            578899999999999999999886 699999999 6888887643        268888887643332237899999977


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +.+++.   ....++..+.++|+|||.++...
T Consensus       102 ~l~~~~---~~~~~l~~~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A          102 VLEHLF---DPWAVIEKVKPYIKQNGVILASI  130 (230)
T ss_dssp             CGGGSS---CHHHHHHHTGGGEEEEEEEEEEE
T ss_pred             hhhhcC---CHHHHHHHHHHHcCCCCEEEEEe
Confidence            655443   45688999999999999998654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.21  E-value=6.5e-12  Score=131.05  Aligned_cols=113  Identities=19%  Similarity=0.287  Sum_probs=85.0

Q ss_pred             HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEE-EEEceeeEeecC
Q psy14674         65 TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVT-ILKGKVEEVELP  142 (519)
Q Consensus        65 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~-~~~~d~~~~~~~  142 (519)
                      .+.+.++....+.++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|+++    ++..... +...+.+.++++
T Consensus        94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~  168 (416)
T 4e2x_A           94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT  168 (416)
T ss_dssp             HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC
Confidence            3445566666677889999999999999999999877 99999999 699998875    3332111 222334444444


Q ss_pred             CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      .  ++||+|++..+.+++   ..+..+++++.++|||||.++...
T Consensus       169 ~--~~fD~I~~~~vl~h~---~d~~~~l~~~~r~LkpgG~l~i~~  208 (416)
T 4e2x_A          169 E--GPANVIYAANTLCHI---PYVQSVLEGVDALLAPDGVFVFED  208 (416)
T ss_dssp             H--CCEEEEEEESCGGGC---TTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             C--CCEEEEEECChHHhc---CCHHHHHHHHHHHcCCCeEEEEEe
Confidence            4  789999998875555   467888999999999999999654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.21  E-value=4.5e-12  Score=137.59  Aligned_cols=104  Identities=22%  Similarity=0.260  Sum_probs=79.0

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||||||+|.++..+|+.|+ +|+|||+| .+++.|+..+.++|.. +|++.+++++++..+...++||+|+|..
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~~e  142 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIGLS  142 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEECc
Confidence            4567999999999999999999998 89999999 6999999999888754 3999999999873221127899999988


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEE
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLL  183 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~l  183 (519)
                      +.+++........+ .++.+.|+++|..
T Consensus       143 ~~ehv~~~~~~~~~-~~~~~tl~~~~~~  169 (569)
T 4azs_A          143 VFHHIVHLHGIDEV-KRLLSRLADVTQA  169 (569)
T ss_dssp             CHHHHHHHHCHHHH-HHHHHHHHHHSSE
T ss_pred             chhcCCCHHHHHHH-HHHHHHhccccce
Confidence            76666544333222 2344556666543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.20  E-value=2.3e-11  Score=122.99  Aligned_cols=112  Identities=16%  Similarity=0.118  Sum_probs=86.3

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHC--CC-CCcEEEEEceeeEe--ecCCCCcee
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKN--NL-SDVVTILKGKVEEV--ELPFGIQKV  148 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~--~~-~~~i~~~~~d~~~~--~~~~~~~~~  148 (519)
                      ..++++|||||||+|.++..+++. +..+|++||+| .+++.|++++...  ++ ..+++++.+|+.+.  ..+.  ++|
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~--~~f  195 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAE--GSY  195 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCT--TCE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccC--CCc
Confidence            356789999999999999999987 45799999999 6999999987652  44 35799999998865  1233  689


Q ss_pred             eEEEEeccccccccch-hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        149 DIIISEWMGYCLFYES-MLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+|+++........+. ....++..+.++|+|||+++.+...
T Consensus       196 DlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  237 (334)
T 1xj5_A          196 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  237 (334)
T ss_dssp             EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             cEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            9999976532211111 1367888999999999999987555

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.20  E-value=2.1e-11  Score=121.34  Aligned_cols=111  Identities=18%  Similarity=0.120  Sum_probs=83.1

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH--CCC-CCcEEEEEceeeEe-ecCCCCceeeE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDK--NNL-SDVVTILKGKVEEV-ELPFGIQKVDI  150 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~~~~D~  150 (519)
                      .++++|||||||+|.++..+++. +..+|++||++ .+++.|++++..  +++ ..+++++.+|+.+. ....  ++||+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~--~~fD~  166 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFK--NEFDV  166 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCS--SCEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCC--CCceE
Confidence            35689999999999999999988 67799999999 699999998754  334 35799999998764 2222  78999


Q ss_pred             EEEeccccccccch--hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLFYES--MLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~e~--~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+++..........  ....++..+.++|+|||+++....+
T Consensus       167 Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          167 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            99976532111111  2256788889999999999987655

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.20  E-value=5.5e-12  Score=120.53  Aligned_cols=107  Identities=16%  Similarity=0.108  Sum_probs=76.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-H-HHHHH---HHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-N-IVEYA---KEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~-~~~~A---~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      .++.+|||||||+|.++..+++. +..+|+|||+| + |++.|   ++++...++.+ +.++++|+++++... .+.+|.
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~-v~~~~~d~~~l~~~~-~d~v~~  100 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN-VVFVIAAAESLPFEL-KNIADS  100 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSS-EEEECCBTTBCCGGG-TTCEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCC-eEEEEcCHHHhhhhc-cCeEEE
Confidence            47789999999999999998864 45589999999 6 66666   88777778764 999999998873211 145666


Q ss_pred             EEEeccccccc--cchhHHHHHHHHhcccCcCeEEEc
Q psy14674        151 IISEWMGYCLF--YESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       151 Ivs~~~~~~l~--~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      |++........  .......++.++.|+|||||.++.
T Consensus       101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          101 ISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            65543211110  001124578899999999999987

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.20  E-value=1.5e-11  Score=125.01  Aligned_cols=106  Identities=23%  Similarity=0.217  Sum_probs=84.9

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCC-CEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGA-ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ..++.+|||+|||+|.++..+++.+. .+|+|+|+| .|++.|++++..+++.  ++++.+|+.+.  +.  ++||+|++
T Consensus       194 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~--~~--~~fD~Iv~  267 (343)
T 2pjd_A          194 PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSE--VK--GRFDMIIS  267 (343)
T ss_dssp             TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTT--CC--SCEEEEEE
T ss_pred             cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEcccccc--cc--CCeeEEEE
Confidence            34567999999999999999998853 499999999 6999999999998876  46788887653  23  78999999


Q ss_pred             eccccccc--cchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        154 EWMGYCLF--YESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       154 ~~~~~~l~--~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +...+...  .......++..+.++|||||.++...
T Consensus       268 ~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  303 (343)
T 2pjd_A          268 NPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVA  303 (343)
T ss_dssp             CCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            88754321  23456788999999999999988543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.20  E-value=3.4e-11  Score=116.41  Aligned_cols=109  Identities=16%  Similarity=0.267  Sum_probs=81.6

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHC--------CCCCcEEEEEceeeE-ee--c
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKN--------NLSDVVTILKGKVEE-VE--L  141 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~--------~~~~~i~~~~~d~~~-~~--~  141 (519)
                      .+.++.+|||||||+|.++..+++.+ ..+|+|||+| .+++.|+++++.+        ++. ++.++.+|+.+ ++  +
T Consensus        46 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~~  124 (246)
T 2vdv_E           46 QMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNFF  124 (246)
T ss_dssp             CBSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGTS
T ss_pred             cCCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHhc
Confidence            34577899999999999999999885 3489999999 6999999998876        664 59999999986 33  3


Q ss_pred             CCCCceeeEEEEecccccccc-----chhHHHHHHHHhcccCcCeEEEcc
Q psy14674        142 PFGIQKVDIIISEWMGYCLFY-----ESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l~~-----e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +.  +.+|.|+..........     ......++..+.++|+|||.++..
T Consensus       125 ~~--~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          125 EK--GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             CT--TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             cc--cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence            33  78999986432111000     001146788889999999998864

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.20  E-value=2.6e-11  Score=116.59  Aligned_cols=108  Identities=19%  Similarity=0.214  Sum_probs=86.5

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-e-cCC-------
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-E-LPF-------  143 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~-~~~-------  143 (519)
                      ..++.+|||||||+|..+..+++. + ..+|+++|++ .+++.|+++++.+++.++++++.+|+.+. + ++.       
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~  137 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW  137 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence            346789999999999999999887 3 5699999999 69999999999999988899999998763 1 110       


Q ss_pred             ----C-C-ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        144 ----G-I-QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       144 ----~-~-~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                          . . ++||+|++...      ......++..+.++|+|||+++.+...
T Consensus       138 ~~~f~~~~~~fD~I~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~  183 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDAD------KENYPNYYPLILKLLKPGGLLIADNVL  183 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             cccccCCCCCcCEEEEeCC------HHHHHHHHHHHHHHcCCCeEEEEEccc
Confidence                0 1 57999998643      234557788889999999999987654

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.20  E-value=2.1e-11  Score=125.94  Aligned_cols=109  Identities=17%  Similarity=0.147  Sum_probs=85.0

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .+|++|||+|||+|.+++.+++.|+. |+|+|+| .+++.|+++++.|++.+  .+.++|+.++..... ++||+|++++
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~-~~fD~Ii~dp  288 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLE-GPFHHVLLDP  288 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCC-CCEEEEEECC
T ss_pred             cCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhc-CCCCEEEECC
Confidence            45899999999999999999999885 9999999 69999999999999875  456889877521111 4599999987


Q ss_pred             cccccc------cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLF------YESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~------~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ..+...      .......++..+.++|+|||.++...++
T Consensus       289 P~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s  328 (393)
T 4dmg_A          289 PTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS  328 (393)
T ss_dssp             CCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            532111      1123456778888999999999966665

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.20  E-value=2.9e-11  Score=119.09  Aligned_cols=111  Identities=14%  Similarity=0.128  Sum_probs=85.4

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH--CCC-CCcEEEEEceeeEe-ecCCCCceeeE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDK--NNL-SDVVTILKGKVEEV-ELPFGIQKVDI  150 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~~~~D~  150 (519)
                      ..+++|||||||+|.++..+++. |..+|++||++ .+++.|++++..  +++ ..+++++.+|+.+. ....  ++||+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~--~~fD~  151 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSE--NQYDV  151 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCC--SCEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCC--CCeeE
Confidence            35789999999999999999988 67899999999 699999998754  234 35799999998764 2222  78999


Q ss_pred             EEEeccccccccch-hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLFYES-MLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+++.......... ....+++.+.++|+|||+++.....
T Consensus       152 Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            99987543211111 1256788889999999999987654

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.20  E-value=1.8e-11  Score=123.26  Aligned_cols=111  Identities=18%  Similarity=0.112  Sum_probs=85.2

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH--CCC-CCcEEEEEceeeEe-ecCCCCceeeE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDK--NNL-SDVVTILKGKVEEV-ELPFGIQKVDI  150 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~~~~D~  150 (519)
                      .++++|||||||+|.++..+++. +..+|+++|++ ++++.|++++..  +++ ..+++++.+|+.+. ....  ++||+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~--~~fDv  192 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVT--NTYDV  192 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCC--SCEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcC--CCceE
Confidence            45689999999999999999987 56799999999 699999998765  334 35799999998764 2222  78999


Q ss_pred             EEEeccccccccchhH-HHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLFYESML-DTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l-~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+++........+... ..+++.+.+.|+|||+++....+
T Consensus       193 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          193 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             EEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            9998643221112222 67888999999999999986544

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.20  E-value=3.6e-11  Score=118.02  Aligned_cols=110  Identities=17%  Similarity=0.207  Sum_probs=81.4

Q ss_pred             CCCEEEEECCcccH----HHHHHHHc-C----CCEEEEEech-HHHHHHHHHHHH-----------------------CC
Q psy14674         78 KGKIVLDIGCGTGI----LSMFAAKS-G----AARVIGIECS-NIVEYAKEIVDK-----------------------NN  124 (519)
Q Consensus        78 ~~~~VLDiGcGtG~----ls~~la~~-g----~~~V~gvD~s-~~~~~A~~~~~~-----------------------~~  124 (519)
                      ++.+|||+|||||.    +++.+++. |    ..+|+|+|+| +|++.|++.+..                       .|
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999997    67767765 3    2389999999 699999986410                       11


Q ss_pred             -------CCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        125 -------LSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       125 -------~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                             +.++|.|.++|+.+.+++. .++||+|+|..+..++. ......++..+.+.|+|||+++.....
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~-~~~fDlI~crnvliyf~-~~~~~~vl~~~~~~L~pgG~L~lg~sE  254 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNV-PGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFAGHSE  254 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCC-CCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred             ceeechhhcccCeEEecccCCCCCCc-CCCeeEEEECCchHhCC-HHHHHHHHHHHHHHhCCCcEEEEEecc
Confidence                   1135999999998744431 26899999966644443 344678899999999999999976554

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.19  E-value=1e-10  Score=119.59  Aligned_cols=113  Identities=13%  Similarity=0.119  Sum_probs=91.4

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .++......++.+|||||||+|.++..+++. +..+++++|+..+++.|+++++.+++.++++++.+|+.+.+++    .
T Consensus       181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~  256 (359)
T 1x19_A          181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP----E  256 (359)
T ss_dssp             HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC----C
T ss_pred             HHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC----C
Confidence            3444455677889999999999999988886 3459999999449999999999999988899999999876444    2


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      .|+|++..+.+++.. .....+++.+.+.|||||.++..
T Consensus       257 ~D~v~~~~vlh~~~d-~~~~~~l~~~~~~L~pgG~l~i~  294 (359)
T 1x19_A          257 ADAVLFCRILYSANE-QLSTIMCKKAFDAMRSGGRLLIL  294 (359)
T ss_dssp             CSEEEEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             CCEEEEechhccCCH-HHHHHHHHHHHHhcCCCCEEEEE
Confidence            499999887665432 34678899999999999998643

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.19  E-value=1.8e-11  Score=121.04  Aligned_cols=110  Identities=20%  Similarity=0.159  Sum_probs=83.6

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC--CC--------CCcEEEEEceeeEeecCCCC
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN--NL--------SDVVTILKGKVEEVELPFGI  145 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~--~~--------~~~i~~~~~d~~~~~~~~~~  145 (519)
                      .++++|||||||+|.++..+++.+..+|++||++ .+++.|++++ ..  ++        ..+++++.+|+.+.....  
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~--  150 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN--  150 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC--
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhccc--
Confidence            4578999999999999999998877799999999 6999999987 43  33        457999999987641112  


Q ss_pred             ceeeEEEEeccccccccchh-HHHHHHHHhcccCcCeEEEccCCc
Q psy14674        146 QKVDIIISEWMGYCLFYESM-LDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e~~-l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++||+|+++........... ...+++.+.++|+|||+++.+...
T Consensus       151 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  195 (281)
T 1mjf_A          151 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  195 (281)
T ss_dssp             CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            78999999876432111111 366788889999999999977544

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.19  E-value=8.8e-11  Score=119.95  Aligned_cols=110  Identities=23%  Similarity=0.265  Sum_probs=88.8

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ......++.+|||||||+|.++..+++.+ ..+++++|+.++++.|++++..+++.++++++.+|+.+ .++   ..||+
T Consensus       177 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~---~~~D~  252 (360)
T 1tw3_A          177 AAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP---RKADA  252 (360)
T ss_dssp             HHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS---SCEEE
T ss_pred             HhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCC---CCccE
Confidence            33455678899999999999999888773 45899999955999999999999998889999999875 455   45999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      |++..+.+++.. .....+++.+.+.|+|||.++..
T Consensus       253 v~~~~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~  287 (360)
T 1tw3_A          253 IILSFVLLNWPD-HDAVRILTRCAEALEPGGRILIH  287 (360)
T ss_dssp             EEEESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEcccccCCCH-HHHHHHHHHHHHhcCCCcEEEEE
Confidence            999877655432 23457889999999999988743

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.19  E-value=9.4e-11  Score=115.35  Aligned_cols=106  Identities=21%  Similarity=0.230  Sum_probs=84.6

Q ss_pred             CCCEEEEECCcc---cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-----------c
Q psy14674         78 KGKIVLDIGCGT---GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-----------L  141 (519)
Q Consensus        78 ~~~~VLDiGcGt---G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-----------~  141 (519)
                      ...+|||||||+   |.++..+++. +..+|+++|+| .|++.|++++..   .++++++++|+.+..           +
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~~  153 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRMI  153 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhccC
Confidence            457999999999   9887766654 34599999999 699999998843   246999999997631           2


Q ss_pred             CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.  ++||+|++..+.|++..+ ....++.++.+.|+|||.++.....
T Consensus       154 d~--~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          154 DF--SRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             CT--TSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             CC--CCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEec
Confidence            32  479999998887777654 5788899999999999999876544

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.18  E-value=2.9e-11  Score=122.61  Aligned_cols=99  Identities=18%  Similarity=0.268  Sum_probs=83.4

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||+|||+|.+++. ++ ++.+|+|+|+| .+++.|+++++.|++.++++++++|+.++.     ++||+|++++
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----~~fD~Vi~dp  266 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----VKGNRVIMNL  266 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----CCEEEEEECC
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----CCCcEEEECC
Confidence            5789999999999999999 87 67899999999 699999999999999778999999998753     5899999986


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ..+.       ..++..+.++|+|||.++...+.
T Consensus       267 P~~~-------~~~l~~~~~~L~~gG~l~~~~~~  293 (336)
T 2yx1_A          267 PKFA-------HKFIDKALDIVEEGGVIHYYTIG  293 (336)
T ss_dssp             TTTG-------GGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             cHhH-------HHHHHHHHHHcCCCCEEEEEEee
Confidence            5221       24566677899999998866554

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.18  E-value=2.6e-11  Score=121.18  Aligned_cols=114  Identities=14%  Similarity=0.039  Sum_probs=83.0

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH---CCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDK---NNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~---~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ..++++|||||||+|.++..+++. +..+|++||++ .+++.|++++..   .....+++++.+|+.++......++||+
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv  172 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV  172 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence            356789999999999999999987 46799999999 699999998742   2223579999999987643201278999


Q ss_pred             EEEeccccccccchh-HHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLFYESM-LDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~-l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+++........... ...+++.+.++|||||+++.....
T Consensus       173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  212 (304)
T 3bwc_A          173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES  212 (304)
T ss_dssp             EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            999876433211111 156788899999999999976443

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.18  E-value=3e-11  Score=124.70  Aligned_cols=110  Identities=18%  Similarity=0.197  Sum_probs=88.8

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC--CCCceeeEEEEe
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP--FGIQKVDIIISE  154 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~~~D~Ivs~  154 (519)
                      ++.+|||+|||+|.+++.+++. +.+|+|+|+| .+++.|+++++.|++.+ ++++++|+.++...  ...++||+|+++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            7889999999999999999988 6699999999 69999999999999977 99999999875221  011689999998


Q ss_pred             cccccccc------chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        155 WMGYCLFY------ESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       155 ~~~~~l~~------e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +..+....      ......++..+.++|+|||.++...++
T Consensus       287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            75332211      134566788888999999999987766

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.17  E-value=2.1e-11  Score=122.19  Aligned_cols=111  Identities=21%  Similarity=0.168  Sum_probs=82.2

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHC--CC-CCcEEEEEceeeEe-ecCCCCceeeE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKN--NL-SDVVTILKGKVEEV-ELPFGIQKVDI  150 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~--~~-~~~i~~~~~d~~~~-~~~~~~~~~D~  150 (519)
                      .++++|||||||+|.++..+++. +..+|+++|++ .+++.|++++...  ++ ..+++++.+|+.+. ....  ++||+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~--~~fD~  184 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHK--NEFDV  184 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCT--TCEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcC--CCceE
Confidence            35689999999999999999987 46799999999 6999999987653  34 46799999998764 2222  78999


Q ss_pred             EEEeccccccccchhH-HHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLFYESML-DTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l-~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+++............ ..+++.+.++|+|||+++.+...
T Consensus       185 Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~  224 (314)
T 2b2c_A          185 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES  224 (314)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence            9997753321112222 67788899999999999987654

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.17  E-value=4.9e-11  Score=122.66  Aligned_cols=100  Identities=21%  Similarity=0.195  Sum_probs=81.8

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCC-CEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGA-ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ..++.+|||+|||+|.++..+++.+. .+|+|+|+| .|++.|+++++.+|+.++++++++|+.+++.+.  ++||+|++
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~--~~fD~Ii~  292 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV--DSVDFAIS  292 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC--SCEEEEEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc--CCcCEEEE
Confidence            56788999999999999999999864 389999999 699999999999999888999999999877665  78999999


Q ss_pred             eccccccc-----cchhHHHHHHHHhccc
Q psy14674        154 EWMGYCLF-----YESMLDTVLYARDKWL  177 (519)
Q Consensus       154 ~~~~~~l~-----~e~~l~~~l~~~~r~L  177 (519)
                      ++....-.     .+.....+++.+.++|
T Consensus       293 npPyg~r~~~~~~~~~ly~~~~~~l~r~l  321 (373)
T 3tm4_A          293 NLPYGLKIGKKSMIPDLYMKFFNELAKVL  321 (373)
T ss_dssp             ECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred             CCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence            87522211     1123466788888888

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.16  E-value=3.8e-11  Score=119.89  Aligned_cols=112  Identities=19%  Similarity=0.149  Sum_probs=83.8

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH--CCC-CCcEEEEEceeeEe-ecCCCCceee
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDK--NNL-SDVVTILKGKVEEV-ELPFGIQKVD  149 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~~~~D  149 (519)
                      ..++++|||||||+|.++..+++. +..+|++||++ ++++.|++++..  +++ ..+++++.+|+.+. ....  ++||
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~--~~fD  170 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQ--DAFD  170 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCS--SCEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCC--CCce
Confidence            356789999999999999999987 46799999999 699999998765  344 46799999998764 2222  7899


Q ss_pred             EEEEeccccccccc-hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        150 IIISEWMGYCLFYE-SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e-~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +|+++........+ .....+++.+.++|+|||+++.+...
T Consensus       171 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          171 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence            99997753321111 12356788889999999999977644

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.15  E-value=2e-11  Score=120.35  Aligned_cols=96  Identities=20%  Similarity=0.205  Sum_probs=70.5

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEE-EceeeEee---cCCCCceeeE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL-KGKVEEVE---LPFGIQKVDI  150 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~-~~d~~~~~---~~~~~~~~D~  150 (519)
                      ..++++|||||||||.++..+++.|+.+|+|||+| .|++.+.+.   +   .++... ..++..+.   ++.  ..||+
T Consensus        83 ~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~---~rv~~~~~~ni~~l~~~~l~~--~~fD~  154 (291)
T 3hp7_A           83 SVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D---DRVRSMEQYNFRYAEPVDFTE--GLPSF  154 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C---TTEEEECSCCGGGCCGGGCTT--CCCSE
T ss_pred             CccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C---cccceecccCceecchhhCCC--CCCCE
Confidence            35688999999999999999999998899999999 698875442   1   123332 23444332   332  35999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      |+++...+.      +..++.++.++|||||.++.
T Consensus       155 v~~d~sf~s------l~~vL~e~~rvLkpGG~lv~  183 (291)
T 3hp7_A          155 ASIDVSFIS------LNLILPALAKILVDGGQVVA  183 (291)
T ss_dssp             EEECCSSSC------GGGTHHHHHHHSCTTCEEEE
T ss_pred             EEEEeeHhh------HHHHHHHHHHHcCcCCEEEE
Confidence            999765332      36678888999999999885

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.15  E-value=6.6e-11  Score=118.78  Aligned_cols=111  Identities=14%  Similarity=0.126  Sum_probs=85.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH--CC-C-CCcEEEEEceeeEe-ecCCCCceee
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDK--NN-L-SDVVTILKGKVEEV-ELPFGIQKVD  149 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~--~~-~-~~~i~~~~~d~~~~-~~~~~~~~~D  149 (519)
                      .++++|||||||+|.++..+++. +..+|++||++ .+++.|++++..  .+ + ..+++++.+|+.+. ....  ++||
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~--~~fD  153 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTE--ERYD  153 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCC--CCEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcC--CCcc
Confidence            45689999999999999999987 56799999999 699999998764  22 3 35799999999874 2222  7899


Q ss_pred             EEEEeccccc---cccchh-HHHHHHHHhcccCcCeEEEccCCc
Q psy14674        150 IIISEWMGYC---LFYESM-LDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       150 ~Ivs~~~~~~---l~~e~~-l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +|+++...+.   ...+.. ...+++.+.++|+|||+++.....
T Consensus       154 ~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  197 (314)
T 1uir_A          154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (314)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence            9999876433   111111 367788999999999999976544

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.15  E-value=8.3e-11  Score=111.40  Aligned_cols=92  Identities=24%  Similarity=0.257  Sum_probs=76.1

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      ++.+|||||||+|.++..+++.     +|+|+| .+++.|+++        +++++.+|+.+++++.  ++||+|++..+
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~--~~fD~v~~~~~  111 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKD--ESFDFALMVTT  111 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCT--TCEEEEEEESC
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCC--CCeeEEEEcch
Confidence            3789999999999999888754     999999 699998876        3789999998876654  78999999876


Q ss_pred             ccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      .+++   .....++..+.++|+|||.++...
T Consensus       112 l~~~---~~~~~~l~~~~~~L~pgG~l~i~~  139 (219)
T 1vlm_A          112 ICFV---DDPERALKEAYRILKKGGYLIVGI  139 (219)
T ss_dssp             GGGS---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Hhhc---cCHHHHHHHHHHHcCCCcEEEEEE
Confidence            5544   346788999999999999998654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.15  E-value=4e-11  Score=114.31  Aligned_cols=103  Identities=24%  Similarity=0.290  Sum_probs=79.5

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc-CC------CEEEEEech-HHHHHHHHHHHHCCC----CCcEEEEEceeeEeecC
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS-GA------ARVIGIECS-NIVEYAKEIVDKNNL----SDVVTILKGKVEEVELP  142 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~------~~V~gvD~s-~~~~~A~~~~~~~~~----~~~i~~~~~d~~~~~~~  142 (519)
                      .+.++.+|||||||+|.++..+++. +.      .+|+++|++ ++++.|++++..++.    ..+++++.+|+.+ .++
T Consensus        81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~  159 (227)
T 1r18_A           81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYP  159 (227)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCG
T ss_pred             hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCC
Confidence            4677899999999999999988875 42      599999999 699999999887652    2359999999876 233


Q ss_pred             CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      . .++||+|++....+.+         ..++.+.|||||.++....
T Consensus       160 ~-~~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          160 P-NAPYNAIHVGAAAPDT---------PTELINQLASGGRLIVPVG  195 (227)
T ss_dssp             G-GCSEEEEEECSCBSSC---------CHHHHHTEEEEEEEEEEES
T ss_pred             c-CCCccEEEECCchHHH---------HHHHHHHhcCCCEEEEEEe
Confidence            2 1689999987654332         2456789999999986544

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.14  E-value=1.3e-10  Score=108.94  Aligned_cols=100  Identities=26%  Similarity=0.220  Sum_probs=80.2

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ...++.+|||+|||+|.++..+++.|..+|+|+|++ .+++.|+++++.+++  +++++++|+.++  +   ++||+|++
T Consensus        46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~--~---~~~D~v~~  118 (207)
T 1wy7_A           46 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF--N---SRVDIVIM  118 (207)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC--C---CCCSEEEE
T ss_pred             CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHc--C---CCCCEEEE
Confidence            456788999999999999999999887799999999 699999999988887  599999999874  3   58999999


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ++..+.... .....++..+.++|  ||.++
T Consensus       119 ~~p~~~~~~-~~~~~~l~~~~~~l--~~~~~  146 (207)
T 1wy7_A          119 NPPFGSQRK-HADRPFLLKAFEIS--DVVYS  146 (207)
T ss_dssp             CCCCSSSST-TTTHHHHHHHHHHC--SEEEE
T ss_pred             cCCCccccC-CchHHHHHHHHHhc--CcEEE
Confidence            887443332 23345677777777  66554

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.14  E-value=6e-11  Score=118.30  Aligned_cols=107  Identities=16%  Similarity=0.174  Sum_probs=82.3

Q ss_pred             CEEEEECCcccHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEEEEec
Q psy14674         80 KIVLDIGCGTGILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDIIISEW  155 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~Ivs~~  155 (519)
                      .+|||||||+|.++..+++ .+..+|++||++ .|++.|++++.... ..+++++.+|+.++.  .+.  ++||+|+++.
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~--~~fDvIi~D~  167 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTP--ASRDVIIRDV  167 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCT--TCEEEEEECC
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccC--CCCCEEEECC
Confidence            4999999999999999998 455599999999 69999999875432 457999999998752  233  7899999976


Q ss_pred             cccccccch-hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLFYES-MLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ......... ....+++.++++|+|||+++.+...
T Consensus       168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            543211111 1257788899999999999976653

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.13  E-value=9.4e-11  Score=120.54  Aligned_cols=104  Identities=11%  Similarity=0.108  Sum_probs=83.7

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCC-CEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE-eecCCCCceeeEEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGA-ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE-VELPFGIQKVDIII  152 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~~~D~Iv  152 (519)
                      ..++++|||+| |+|.++..+++.+. .+|+|+|++ +|++.|+++++.+|+. +++++++|+.+ ++.. ..++||+|+
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~-~~~~fD~Vi  246 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDY-ALHKFDTFI  246 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTT-TSSCBSEEE
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhh-ccCCccEEE
Confidence            34688999999 99999999998865 799999999 6999999999999987 69999999987 4321 126899999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCe-EEEcc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNG-LLFPD  186 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG-~lip~  186 (519)
                      +++..+..   . ...++..+.++||||| .++.+
T Consensus       247 ~~~p~~~~---~-~~~~l~~~~~~LkpgG~~~~~~  277 (373)
T 2qm3_A          247 TDPPETLE---A-IRAFVGRGIATLKGPRCAGYFG  277 (373)
T ss_dssp             ECCCSSHH---H-HHHHHHHHHHTBCSTTCEEEEE
T ss_pred             ECCCCchH---H-HHHHHHHHHHHcccCCeEEEEE
Confidence            98753221   2 5778888999999999 43433

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.13  E-value=5e-12  Score=124.49  Aligned_cols=110  Identities=19%  Similarity=0.184  Sum_probs=75.6

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHH-HHCCCCCcEEEE--EceeeEeecCCCCc
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIV-DKNNLSDVVTIL--KGKVEEVELPFGIQ  146 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~-~~~~~~~~i~~~--~~d~~~~~~~~~~~  146 (519)
                      +.+...+.++.+|||||||+|.++..+++.  .+|+|||+++|+..|++.. .......+++++  ++|+.+++  .  +
T Consensus        74 i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~--~  147 (276)
T 2wa2_A           74 IDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--P--F  147 (276)
T ss_dssp             HHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--C--C
T ss_pred             HHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--C--C
Confidence            334445667899999999999999999988  5899999998643332210 001111258889  88988753  3  7


Q ss_pred             eeeEEEEeccccccccch--hH--HHHHHHHhcccCcCe--EEEcc
Q psy14674        147 KVDIIISEWMGYCLFYES--ML--DTVLYARDKWLATNG--LLFPD  186 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~--~l--~~~l~~~~r~LkpgG--~lip~  186 (519)
                      +||+|+|+.. +......  ..  ..++..+.++|||||  .++..
T Consensus       148 ~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~  192 (276)
T 2wa2_A          148 QADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK  192 (276)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred             CcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence            8999999876 3322211  11  126788889999999  88853

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.13  E-value=3.8e-11  Score=115.51  Aligned_cols=98  Identities=11%  Similarity=0.112  Sum_probs=76.0

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-----CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe---ecCCCCcee
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-----GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV---ELPFGIQKV  148 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-----g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~~~  148 (519)
                      ++.+|||||||+|..+..+++.     +..+|+|||+| +|++.|+      ++.++|+++++|+.+.   +... ..+|
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~-~~~f  153 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLR-EMAH  153 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGS-SSCS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhc-cCCC
Confidence            5679999999999999998885     35699999999 6888877      2235699999999874   3222 1379


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhc-ccCcCeEEEccCC
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDK-WLATNGLLFPDKA  188 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r-~LkpgG~lip~~~  188 (519)
                      |+|+++.. +    . ....++.++.+ +|||||+++.+..
T Consensus       154 D~I~~d~~-~----~-~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          154 PLIFIDNA-H----A-NTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             SEEEEESS-C----S-SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             CEEEECCc-h----H-hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            99998664 2    1 35667888887 9999999997654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.12  E-value=6e-11  Score=108.08  Aligned_cols=95  Identities=18%  Similarity=0.170  Sum_probs=70.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||+|||+|.++..+++.+  +|+|+|+| .|++.          .++++++++|+.+ .++.  ++||+|+++.
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~----------~~~~~~~~~d~~~-~~~~--~~fD~i~~n~   86 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES----------HRGGNLVRADLLC-SINQ--ESVDVVVFNP   86 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT----------CSSSCEEECSTTT-TBCG--GGCSEEEECC
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc----------ccCCeEEECChhh-hccc--CCCCEEEECC
Confidence            457799999999999999999987  99999999 58776          2458999999987 4444  7999999987


Q ss_pred             cccccccc------hhHHHHHHHHhcccCcCeEEEccC
Q psy14674        156 MGYCLFYE------SMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       156 ~~~~l~~e------~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ..+.....      .....++..+.+.| |||.++...
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           87 PYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             CCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred             CCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence            64422111      11234455666667 999987543

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.12  E-value=9.8e-11  Score=115.90  Aligned_cols=83  Identities=20%  Similarity=0.329  Sum_probs=69.6

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      |.......++.+|||||||+|.++..+++.+. +|+|+|++ .|++.|++++..++..++++++++|+.+++++    .|
T Consensus        20 i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~----~f   94 (285)
T 1zq9_A           20 IIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP----FF   94 (285)
T ss_dssp             HHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC----CC
T ss_pred             HHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch----hh
Confidence            33445667889999999999999999999865 99999999 69999999988777766799999999876443    69


Q ss_pred             eEEEEeccc
Q psy14674        149 DIIISEWMG  157 (519)
Q Consensus       149 D~Ivs~~~~  157 (519)
                      |+|+++...
T Consensus        95 D~vv~nlpy  103 (285)
T 1zq9_A           95 DTCVANLPY  103 (285)
T ss_dssp             SEEEEECCG
T ss_pred             cEEEEecCc
Confidence            999997653

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.12  E-value=1e-10  Score=118.17  Aligned_cols=113  Identities=16%  Similarity=0.146  Sum_probs=89.4

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      +.......+ .+|||||||+|.++..+++. +..+++++|+..+++.|++++...++.++++++.+|+.+ +++   ++|
T Consensus       160 ~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~---~~~  234 (334)
T 2ip2_A          160 IPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP---SNG  234 (334)
T ss_dssp             HHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC---SSC
T ss_pred             HHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC---CCC
Confidence            333334455 89999999999999988876 455999999944999999998887777789999999976 455   679


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      |+|++..+.|++.. .....+++.+.+.|+|||.++....
T Consensus       235 D~v~~~~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~  273 (334)
T 2ip2_A          235 DIYLLSRIIGDLDE-AASLRLLGNCREAMAGDGRVVVIER  273 (334)
T ss_dssp             SEEEEESCGGGCCH-HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CEEEEchhccCCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            99999887665432 3445789999999999999885543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.12  E-value=2.4e-12  Score=126.08  Aligned_cols=108  Identities=17%  Similarity=0.185  Sum_probs=74.1

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHH-HHCCCCCcEEEE--EceeeEeecCCCCcee
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIV-DKNNLSDVVTIL--KGKVEEVELPFGIQKV  148 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~-~~~~~~~~i~~~--~~d~~~~~~~~~~~~~  148 (519)
                      ....+.++.+|||||||+|.++..+++.  .+|+|||+++|+..+++.. .......++.++  ++|+.+++  .  ++|
T Consensus        68 ~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~--~~f  141 (265)
T 2oxt_A           68 ERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--V--ERT  141 (265)
T ss_dssp             HHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--C--CCC
T ss_pred             HcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--C--CCC
Confidence            3345667899999999999999999988  5899999998643322110 001111157888  88988643  3  789


Q ss_pred             eEEEEeccccccccch-h-H--HHHHHHHhcccCcCe--EEEcc
Q psy14674        149 DIIISEWMGYCLFYES-M-L--DTVLYARDKWLATNG--LLFPD  186 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~-~-l--~~~l~~~~r~LkpgG--~lip~  186 (519)
                      |+|+|+.. +...... . .  ..++..+.++|||||  .++..
T Consensus       142 D~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~k  184 (265)
T 2oxt_A          142 DVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVK  184 (265)
T ss_dssp             SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             cEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence            99999876 3322211 1 1  126788889999999  88863

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.12  E-value=7.4e-11  Score=123.86  Aligned_cols=111  Identities=14%  Similarity=0.089  Sum_probs=88.1

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec-CCCCceeeE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL-PFGIQKVDI  150 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~D~  150 (519)
                      ...++.+|||+|||+|..+..+|+.  +..+|+|+|+| .+++.++++++.+|+.  +.++++|+.++.. ..  ++||+
T Consensus        98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~--~~FD~  173 (464)
T 3m6w_A           98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFG--TYFHR  173 (464)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHC--SCEEE
T ss_pred             CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhcc--ccCCE
Confidence            4568899999999999999988875  34699999999 6999999999999986  8999999887641 22  78999


Q ss_pred             EEEecccccc----ccc---------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCL----FYE---------------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l----~~e---------------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+++......    ...               .....++..+.++|||||.++.++|+
T Consensus       174 Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs  231 (464)
T 3m6w_A          174 VLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT  231 (464)
T ss_dssp             EEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             EEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence            9986542111    000               11266888889999999999998888

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.12  E-value=9.4e-11  Score=115.90  Aligned_cols=112  Identities=18%  Similarity=0.103  Sum_probs=85.9

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCC--C-CCcEEEEEceeeEe-ecCCCCceee
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNN--L-SDVVTILKGKVEEV-ELPFGIQKVD  149 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~--~-~~~i~~~~~d~~~~-~~~~~~~~~D  149 (519)
                      ..++++|||||||+|.++..+++. +..+|+++|++ .+++.|++++...+  + ..+++++.+|+.+. ....  ++||
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~--~~fD  153 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVT--NTYD  153 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCC--SCEE
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCC--CCce
Confidence            346789999999999999999987 46799999999 69999999876432  2 35799999998764 2122  7899


Q ss_pred             EEEEeccccccccchhH-HHHHHHHhcccCcCeEEEccCCc
Q psy14674        150 IIISEWMGYCLFYESML-DTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l-~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +|+++............ ..+++.+.++|+|||+++....+
T Consensus       154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  194 (283)
T ss_dssp             EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence            99997654322222211 67889999999999999977654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.10  E-value=1.1e-10  Score=105.49  Aligned_cols=100  Identities=20%  Similarity=0.248  Sum_probs=75.7

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-CC-CEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCC
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-GA-ARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPF  143 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~  143 (519)
                      ....++.+|||+|||+|.++..+++. |. .+|+|+|++++++.           .+++++.+|+.+.+        ++.
T Consensus        18 ~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T 1ej0_A           18 KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI-----------VGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC-----------TTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             CCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccccc-----------CcEEEEEcccccchhhhhhhccCCC
Confidence            34677889999999999999999887 43 69999999973221           35899999998765        454


Q ss_pred             CCceeeEEEEeccccccccc--h------hHHHHHHHHhcccCcCeEEEcc
Q psy14674        144 GIQKVDIIISEWMGYCLFYE--S------MLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e--~------~l~~~l~~~~r~LkpgG~lip~  186 (519)
                        ++||+|+++...+.....  .      ....++..+.++|+|||.++..
T Consensus        87 --~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  135 (180)
T 1ej0_A           87 --SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             --CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence              789999997764433221  1      1157788889999999999854

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.08  E-value=2e-11  Score=117.15  Aligned_cols=98  Identities=19%  Similarity=0.244  Sum_probs=65.0

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEE-ceeeEe---ecCCCCcee
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILK-GKVEEV---ELPFGIQKV  148 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~-~d~~~~---~~~~~~~~~  148 (519)
                      ....++++|||||||+|.++..+++.|+.+|+|+|+| +|++.|+++...      +.... .++..+   .++.  ..+
T Consensus        33 ~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~  104 (232)
T 3opn_A           33 HLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER------VVVMEQFNFRNAVLADFEQ--GRP  104 (232)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT------EEEECSCCGGGCCGGGCCS--CCC
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc------ccccccceEEEeCHhHcCc--CCC
Confidence            3345678999999999999999999987899999999 699887764322      22211 122111   1111  124


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      |.+.++.+...      +..++.++.++|||||.++.
T Consensus       105 d~~~~D~v~~~------l~~~l~~i~rvLkpgG~lv~  135 (232)
T 3opn_A          105 SFTSIDVSFIS------LDLILPPLYEILEKNGEVAA  135 (232)
T ss_dssp             SEEEECCSSSC------GGGTHHHHHHHSCTTCEEEE
T ss_pred             CEEEEEEEhhh------HHHHHHHHHHhccCCCEEEE
Confidence            55544443221      25578888999999999886

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.08  E-value=1.5e-10  Score=121.41  Aligned_cols=112  Identities=17%  Similarity=0.068  Sum_probs=88.7

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec-CCCCceeeE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL-PFGIQKVDI  150 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~D~  150 (519)
                      ...++.+|||+|||+|..+..+|+.  +..+|+|+|++ .+++.++++++.+|+.+ +.++++|+.++.. ..  ++||+
T Consensus       102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n-v~v~~~Da~~l~~~~~--~~FD~  178 (456)
T 3m4x_A          102 AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAPAELVPHFS--GFFDR  178 (456)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS-EEEECCCHHHHHHHHT--TCEEE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhhhcc--ccCCE
Confidence            4568899999999999999988875  45699999999 69999999999999875 9999999987631 22  78999


Q ss_pred             EEEeccccccc----cc---------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLF----YE---------------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~----~e---------------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+++..-....    ..               .....++..+.++|||||.++.++|+
T Consensus       179 Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs  236 (456)
T 3m4x_A          179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT  236 (456)
T ss_dssp             EEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred             EEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence            99976411111    00               11236788888999999999998888

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.08  E-value=1.2e-10  Score=108.37  Aligned_cols=98  Identities=23%  Similarity=0.383  Sum_probs=71.9

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-C--CCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEee------------
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-G--AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVE------------  140 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g--~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~------------  140 (519)
                      +.++.+|||+|||+|.++..+++. +  ..+|+|+|+|++.          .. .+++++++|+.+..            
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PI-PNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CC-TTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CC-CCceEEEccccchhhhhhcccccccc
Confidence            567889999999999999999876 4  4699999999742          12 34899999987654            


Q ss_pred             -------------cCCCCceeeEEEEecccccccc--ch------hHHHHHHHHhcccCcCeEEEcc
Q psy14674        141 -------------LPFGIQKVDIIISEWMGYCLFY--ES------MLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       141 -------------~~~~~~~~D~Ivs~~~~~~l~~--e~------~l~~~l~~~~r~LkpgG~lip~  186 (519)
                                   ++.  ++||+|+++...+....  ..      ....++..+.++|||||.++..
T Consensus        89 ~~~~~~~~~~~~~~~~--~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~  153 (201)
T 2plw_A           89 MNNNSVDYKLKEILQD--KKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK  153 (201)
T ss_dssp             ---CHHHHHHHHHHTT--CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccchhhHHHHHhhcCC--CcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence                         343  68999999765433211  11      1124678888999999999853

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.06  E-value=2.4e-10  Score=106.59  Aligned_cols=91  Identities=22%  Similarity=0.166  Sum_probs=70.0

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ...++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.|++++.      +++++++|+.++  +   ++||+|++
T Consensus        48 ~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~--~---~~~D~v~~  116 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI--S---GKYDTWIM  116 (200)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC--C---CCEEEEEE
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHC--C---CCeeEEEE
Confidence            345788999999999999999999887789999999 69999998865      489999999874  4   68999999


Q ss_pred             eccccccccchhHHHHHHHHhccc
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWL  177 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~L  177 (519)
                      ++..+.... .....++..+.+.|
T Consensus       117 ~~p~~~~~~-~~~~~~l~~~~~~~  139 (200)
T 1ne2_A          117 NPPFGSVVK-HSDRAFIDKAFETS  139 (200)
T ss_dssp             CCCC--------CHHHHHHHHHHE
T ss_pred             CCCchhccC-chhHHHHHHHHHhc
Confidence            887655543 22345667777777

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.06  E-value=1e-10  Score=114.35  Aligned_cols=93  Identities=20%  Similarity=0.259  Sum_probs=74.4

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      .++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+++.      .++.++.+|+.+++++.  ++||+|++.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~--~~fD~v~~~  155 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSD--TSMDAIIRI  155 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCT--TCEEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCC--CceeEEEEe
Confidence            56789999999999999999887 34599999999 6999998764      23789999998776665  789999985


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ...          ..+.++.++|||||.++...
T Consensus       156 ~~~----------~~l~~~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          156 YAP----------CKAEELARVVKPGGWVITAT  178 (269)
T ss_dssp             SCC----------CCHHHHHHHEEEEEEEEEEE
T ss_pred             CCh----------hhHHHHHHhcCCCcEEEEEE
Confidence            431          12567789999999988543

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.06  E-value=2.8e-10  Score=120.41  Aligned_cols=109  Identities=12%  Similarity=0.073  Sum_probs=86.6

Q ss_pred             CCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec-CCCCceeeEEEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL-PFGIQKVDIIIS  153 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~D~Ivs  153 (519)
                      ++.+|||+|||+|..+..+|+.  +..+|+|+|++ .+++.++++++.+|+.+ ++++++|+.++.. ..  ++||+|++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n-v~~~~~D~~~~~~~~~--~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALTHFDGRVFGAAVP--EMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECCCSTTHHHHST--TCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHhhhhcc--ccCCEEEE
Confidence            8899999999999999988876  34699999999 69999999999999864 9999999987642 22  68999999


Q ss_pred             eccccc--c--ccc---------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        154 EWMGYC--L--FYE---------------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~--l--~~e---------------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.....  .  ...               .....++..+.++|||||.++.+.|+
T Consensus       194 D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs  248 (479)
T 2frx_A          194 DAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT  248 (479)
T ss_dssp             ECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence            753211  1  110               11246788888999999999998887

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.05  E-value=2.6e-10  Score=117.59  Aligned_cols=116  Identities=14%  Similarity=0.185  Sum_probs=89.4

Q ss_pred             HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC---------------------------------------CEEEE
Q psy14674         66 YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGA---------------------------------------ARVIG  106 (519)
Q Consensus        66 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~---------------------------------------~~V~g  106 (519)
                      ...+++......++.+|||+|||+|.+++.+|..+.                                       .+|+|
T Consensus       183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  262 (385)
T 3ldu_A          183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG  262 (385)
T ss_dssp             HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred             HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence            445666667777889999999999999998887632                                       37999


Q ss_pred             Eech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc-cccccchhHHHHHHHHhcccCc--CeE
Q psy14674        107 IECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG-YCLFYESMLDTVLYARDKWLAT--NGL  182 (519)
Q Consensus       107 vD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~-~~l~~e~~l~~~l~~~~r~Lkp--gG~  182 (519)
                      +|++ .|++.|++++..+|+.+.|++.++|+.++..+   ++||+|++++.. .-+..+..+..+...+.+.||+  ||.
T Consensus       263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~---~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~  339 (385)
T 3ldu_A          263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE---DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWS  339 (385)
T ss_dssp             EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS---CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC---CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCE
Confidence            9999 69999999999999988899999999987655   689999999862 2222234455666666666665  654


Q ss_pred             EE
Q psy14674        183 LF  184 (519)
Q Consensus       183 li  184 (519)
                      +.
T Consensus       340 ~~  341 (385)
T 3ldu_A          340 YY  341 (385)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.05  E-value=5.2e-10  Score=106.20  Aligned_cols=99  Identities=19%  Similarity=0.167  Sum_probs=80.9

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||||||+|.+++.++  +..+++|+|++ .|++.+++++..++..  ..+..+|....+++   +++|+|++.-
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~--~~~~v~D~~~~~~~---~~~DvvLllk  176 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWD--FTFALQDVLCAPPA---EAGDLALIFK  176 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCE--EEEEECCTTTSCCC---CBCSEEEEES
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeecccCCCC---CCcchHHHHH
Confidence            567899999999999999887  67799999999 6999999999988853  78888888876655   7999999988


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      +.+++..+..- ..+ ++...|+++|++|
T Consensus       177 ~lh~LE~q~~~-~~~-~ll~aL~~~~vvV  203 (253)
T 3frh_A          177 LLPLLEREQAG-SAM-ALLQSLNTPRMAV  203 (253)
T ss_dssp             CHHHHHHHSTT-HHH-HHHHHCBCSEEEE
T ss_pred             HHHHhhhhchh-hHH-HHHHHhcCCCEEE
Confidence            87777655432 333 5556899999887

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.04  E-value=4.2e-10  Score=112.12  Aligned_cols=79  Identities=22%  Similarity=0.327  Sum_probs=63.2

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ..+.++.+|||||||+|.++..+++.+. +|+|+|++ .|++.|+++++.+++ ++++++++|+.++++    ++||+|+
T Consensus        38 ~~~~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~----~~~D~Vv  111 (299)
T 2h1r_A           38 AKIKSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF----PKFDVCT  111 (299)
T ss_dssp             HCCCTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC----CCCSEEE
T ss_pred             cCCCCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc----ccCCEEE
Confidence            3556788999999999999999998854 99999999 699999999988877 459999999987543    4799999


Q ss_pred             Eecccc
Q psy14674        153 SEWMGY  158 (519)
Q Consensus       153 s~~~~~  158 (519)
                      ++...+
T Consensus       112 ~n~py~  117 (299)
T 2h1r_A          112 ANIPYK  117 (299)
T ss_dssp             EECCGG
T ss_pred             EcCCcc
Confidence            987643

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.04  E-value=1.6e-10  Score=117.53  Aligned_cols=111  Identities=12%  Similarity=0.154  Sum_probs=83.7

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .+.....+.++.+|||||||+|.++..+++. +..+++++|+++++.  +++.+..++.++++++.+|+.+ ++|    +
T Consensus       175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~p----~  247 (348)
T 3lst_A          175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPDVAGRWKVVEGDFLR-EVP----H  247 (348)
T ss_dssp             HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGGGTTSEEEEECCTTT-CCC----C
T ss_pred             HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccCCCCCeEEEecCCCC-CCC----C
Confidence            3444456677889999999999999988876 455899999986555  4444445666789999999962 333    7


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ||+|++..+.|++.. .....+++++++.|||||.++...
T Consensus       248 ~D~v~~~~vlh~~~d-~~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          248 ADVHVLKRILHNWGD-EDSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             CSEEEEESCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             CcEEEEehhccCCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999999887665543 234678999999999999998543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.04  E-value=3e-10  Score=105.58  Aligned_cols=100  Identities=19%  Similarity=0.240  Sum_probs=71.5

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC------C---C
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF------G---I  145 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~------~---~  145 (519)
                      .+.++.+|||+|||+|.++..+++. ..+|+|+|++++.          .. .+++++++|+.+.....      .   .
T Consensus        22 ~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~   89 (191)
T 3dou_A           22 VVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME----------EI-AGVRFIRCDIFKETIFDDIDRALREEGI   89 (191)
T ss_dssp             CSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHTC
T ss_pred             CCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc----------cC-CCeEEEEccccCHHHHHHHHHHhhcccC
Confidence            4567899999999999999999998 5599999999631          12 34899999987643110      0   0


Q ss_pred             ceeeEEEEecccccccc--------chhHHHHHHHHhcccCcCeEEEcc
Q psy14674        146 QKVDIIISEWMGYCLFY--------ESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~--------e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ++||+|+|+........        ......++..+.++|||||.++..
T Consensus        90 ~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k  138 (191)
T 3dou_A           90 EKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK  138 (191)
T ss_dssp             SSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            38999999764221111        122356677788999999999843

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.04  E-value=6.6e-10  Score=117.06  Aligned_cols=112  Identities=13%  Similarity=0.113  Sum_probs=87.8

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceee
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVD  149 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D  149 (519)
                      ...++.+|||+|||+|..+..+++. + ..+|+|+|++ .+++.++++++.+|+.+ ++++++|+.++.  ++.  ++||
T Consensus       256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~-v~~~~~D~~~~~~~~~~--~~fD  332 (450)
T 2yxl_A          256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI-VKPLVKDARKAPEIIGE--EVAD  332 (450)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCTTCCSSSSCS--SCEE
T ss_pred             CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEEEcChhhcchhhcc--CCCC
Confidence            4578899999999999999988875 3 3699999999 69999999999999864 999999998764  332  6799


Q ss_pred             EEEEecccccc---ccchh----------------HHHHHHHHhcccCcCeEEEccCCc
Q psy14674        150 IIISEWMGYCL---FYESM----------------LDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       150 ~Ivs~~~~~~l---~~e~~----------------l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +|+++......   .....                ...++..+.++|||||.++...++
T Consensus       333 ~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs  391 (450)
T 2yxl_A          333 KVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS  391 (450)
T ss_dssp             EEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             EEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            99986532111   10111                156788889999999999988877

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.03  E-value=5.7e-10  Score=114.76  Aligned_cols=118  Identities=20%  Similarity=0.285  Sum_probs=91.1

Q ss_pred             HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC---------------------------------------CEE
Q psy14674         64 MTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGA---------------------------------------ARV  104 (519)
Q Consensus        64 ~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~---------------------------------------~~V  104 (519)
                      +.+..+++......++..|||.+||+|.+++.+|..+.                                       .+|
T Consensus       180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v  259 (384)
T 3ldg_A          180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI  259 (384)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence            33445566666777889999999999999988886533                                       359


Q ss_pred             EEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc-ccccccchhHHHHHHHHhcccCc--C
Q psy14674        105 IGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM-GYCLFYESMLDTVLYARDKWLAT--N  180 (519)
Q Consensus       105 ~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~-~~~l~~e~~l~~~l~~~~r~Lkp--g  180 (519)
                      +|+|++ .|++.|+++++.+|+.++++++++|+.++..+   ++||+|++++. +.-+..+..+..+...+.+.||+  |
T Consensus       260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~---~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g  336 (384)
T 3ldg_A          260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN---KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKT  336 (384)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC---CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTT
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc---CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCC
Confidence            999999 69999999999999998999999999987655   68999999976 23333344566666666666665  6


Q ss_pred             eEEE
Q psy14674        181 GLLF  184 (519)
Q Consensus       181 G~li  184 (519)
                      |.+.
T Consensus       337 ~~~~  340 (384)
T 3ldg_A          337 WSQF  340 (384)
T ss_dssp             SEEE
T ss_pred             cEEE
Confidence            6544

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.03  E-value=2.6e-10  Score=109.18  Aligned_cols=101  Identities=13%  Similarity=0.123  Sum_probs=82.4

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      .+..+|||||||+|.+++.++.. +..+|+|+|++ .|++.+++++..+|+.  ..+...|...-.++   +++|++++.
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~p~---~~~DvaL~l  205 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDRLD---EPADVTLLL  205 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSCCC---SCCSEEEET
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccCCC---CCcchHHHH
Confidence            45779999999999999988877 77799999999 6999999999999986  67777777654444   899999998


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      -+.+++..+.. ...+ .+...|+|+|++|
T Consensus       206 kti~~Le~q~k-g~g~-~ll~aL~~~~vvV  233 (281)
T 3lcv_B          206 KTLPCLETQQR-GSGW-EVIDIVNSPNIVV  233 (281)
T ss_dssp             TCHHHHHHHST-THHH-HHHHHSSCSEEEE
T ss_pred             HHHHHhhhhhh-HHHH-HHHHHhCCCCEEE
Confidence            88777765432 2233 5668899999988

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.03  E-value=3.5e-10  Score=116.85  Aligned_cols=117  Identities=16%  Similarity=0.191  Sum_probs=88.2

Q ss_pred             HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC---------------------------------------CEEE
Q psy14674         65 TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGA---------------------------------------ARVI  105 (519)
Q Consensus        65 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~---------------------------------------~~V~  105 (519)
                      ....+++......++..|||.+||+|.+++.+|..+.                                       .+|+
T Consensus       188 ~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~  267 (393)
T 3k0b_A          188 TMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII  267 (393)
T ss_dssp             HHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred             HHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence            3445566666777889999999999999988887533                                       3599


Q ss_pred             EEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc-cccccchhHHHHHHHHhcccCc--Ce
Q psy14674        106 GIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG-YCLFYESMLDTVLYARDKWLAT--NG  181 (519)
Q Consensus       106 gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~-~~l~~e~~l~~~l~~~~r~Lkp--gG  181 (519)
                      |+|++ .|++.|+++++.+|+.++|+++++|+.++..+   ++||+|++++.. .-+..+..+..+...+.+.||+  ||
T Consensus       268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~---~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~  344 (393)
T 3k0b_A          268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE---DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTW  344 (393)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC---CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC---CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCC
Confidence            99999 69999999999999988899999999987655   689999999762 2222223455555555555554  66


Q ss_pred             EEE
Q psy14674        182 LLF  184 (519)
Q Consensus       182 ~li  184 (519)
                      .++
T Consensus       345 ~~~  347 (393)
T 3k0b_A          345 SVY  347 (393)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.01  E-value=1.1e-09  Score=114.77  Aligned_cols=116  Identities=21%  Similarity=0.204  Sum_probs=84.8

Q ss_pred             HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--
Q psy14674         64 MTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--  140 (519)
Q Consensus        64 ~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--  140 (519)
                      +.+.+.++......++.+|||+|||+|.+++.+++. ..+|+|+|+| ++++.|+++++.+++. +++++++|+.+..  
T Consensus       272 e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~~  349 (433)
T 1uwv_A          272 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTK  349 (433)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSS
T ss_pred             HHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhhh
Confidence            333334434445567889999999999999999988 5599999999 6999999999999987 5999999998731  


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      ++...++||+|++++.....      ..++..+. .++|+++++.+..
T Consensus       350 ~~~~~~~fD~Vv~dPPr~g~------~~~~~~l~-~~~p~~ivyvsc~  390 (433)
T 1uwv_A          350 QPWAKNGFDKVLLDPARAGA------AGVMQQII-KLEPIRIVYVSCN  390 (433)
T ss_dssp             SGGGTTCCSEEEECCCTTCC------HHHHHHHH-HHCCSEEEEEESC
T ss_pred             hhhhcCCCCEEEECCCCccH------HHHHHHHH-hcCCCeEEEEECC
Confidence            11112689999998763322      12344443 3789988775543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.01  E-value=5e-10  Score=103.70  Aligned_cols=101  Identities=26%  Similarity=0.338  Sum_probs=72.1

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-CC---------CEEEEEechHHHHHHHHHHHHCCCCCcEEEE-EceeeEee--
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-GA---------ARVIGIECSNIVEYAKEIVDKNNLSDVVTIL-KGKVEEVE--  140 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~---------~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~-~~d~~~~~--  140 (519)
                      ..+.++.+|||+|||+|.++..+++. |.         .+|+|+|+|++.          .+ .+++++ .+|+.+..  
T Consensus        18 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~~-~~~~~~~~~d~~~~~~~   86 (196)
T 2nyu_A           18 QILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------PL-EGATFLCPADVTDPRTS   86 (196)
T ss_dssp             CCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------CC-TTCEEECSCCTTSHHHH
T ss_pred             CCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------cC-CCCeEEEeccCCCHHHH
Confidence            34567899999999999999999887 54         699999999631          12 247888 88876542  


Q ss_pred             ------cCCCCceeeEEEEeccccccccc-h-------hHHHHHHHHhcccCcCeEEEccC
Q psy14674        141 ------LPFGIQKVDIIISEWMGYCLFYE-S-------MLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       141 ------~~~~~~~~D~Ivs~~~~~~l~~e-~-------~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                            ++.  ++||+|+|+...+...+. .       ....++..+.++|||||.++...
T Consensus        87 ~~~~~~~~~--~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           87 QRILEVLPG--RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HHHHHHSGG--GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHhcCC--CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence                  222  589999996543221111 1       11467888899999999998653

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.01  E-value=1.1e-09  Score=114.34  Aligned_cols=101  Identities=20%  Similarity=0.273  Sum_probs=80.7

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      +.++.+|||+|||+|.+++.+|+.+ .+|+|+|+| +|++.|+++++.|++.  ++++.+|+.++ ++   .+||+|+++
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~-~~---~~fD~Vv~d  360 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREV-SV---KGFDTVIVD  360 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTC-CC---TTCSEEEEC
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHc-Cc---cCCCEEEEc
Confidence            4678899999999999999999874 499999999 6999999999999986  99999999875 23   379999998


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +....     ..+.+++.+. .|+|||+++.+...
T Consensus       361 PPr~g-----~~~~~~~~l~-~l~p~givyvsc~p  389 (425)
T 2jjq_A          361 PPRAG-----LHPRLVKRLN-REKPGVIVYVSCNP  389 (425)
T ss_dssp             CCTTC-----SCHHHHHHHH-HHCCSEEEEEESCH
T ss_pred             CCccc-----hHHHHHHHHH-hcCCCcEEEEECCh
Confidence            75221     2233455553 48999999876544

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.00  E-value=4.3e-11  Score=119.55  Aligned_cols=137  Identities=19%  Similarity=0.218  Sum_probs=85.1

Q ss_pred             hhhhccccccccHH-------hhhcH------HHHHHHHH-HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEE
Q psy14674         42 YYFDSYAHFGIHEE-------MLKDE------VRTMTYRN-SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGI  107 (519)
Q Consensus        42 ~yf~~y~~~~~~~~-------~l~d~------~r~~~y~~-ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gv  107 (519)
                      .||++|...++++.       ++.+.      ....+|.- .+.....+.++.+|||||||+|.++..+++.  ++|+||
T Consensus        32 ~~f~~y~~~~i~e~~~~~a~~~l~~g~~~~~~~sR~a~KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gv  109 (305)
T 2p41_A           32 SEFQIYKKSGIQEVDRTLAKEGIKRGETDHHAVSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREV  109 (305)
T ss_dssp             HHHHHHHHTTCEEEECHHHHHHHHTTCCSSCCSSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEE
T ss_pred             HHHHHhcccCccccCHHHHHHHHHcCCCcCCccccHHHHHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEE
Confidence            48888886665442       33211      11122221 2233334567889999999999999999988  489999


Q ss_pred             ec----h-HHHHHHHHHHHHCCCCCcEEEEEc-eeeEeecCCCCceeeEEEEecccccccc---chhHHHHHHHHhcccC
Q psy14674        108 EC----S-NIVEYAKEIVDKNNLSDVVTILKG-KVEEVELPFGIQKVDIIISEWMGYCLFY---ESMLDTVLYARDKWLA  178 (519)
Q Consensus       108 D~----s-~~~~~A~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~D~Ivs~~~~~~l~~---e~~l~~~l~~~~r~Lk  178 (519)
                      |+    + .+++.++  .+..+ .++++++++ |+.++  +.  ++||+|+|+...+....   +.....++..+.++||
T Consensus       110 D~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l--~~--~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~Lk  182 (305)
T 2p41_A          110 KGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFI--PP--ERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLS  182 (305)
T ss_dssp             EEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTS--CC--CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCC
T ss_pred             eccccCchhHHHHHH--hhhcC-CCCeEEEeccccccC--Cc--CCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhC
Confidence            99    4 3332211  11111 145999998 87654  33  68999999876431111   1101146777889999


Q ss_pred             cCeEEEccC
Q psy14674        179 TNGLLFPDK  187 (519)
Q Consensus       179 pgG~lip~~  187 (519)
                      |||.++...
T Consensus       183 pGG~~v~kv  191 (305)
T 2p41_A          183 NNTQFCVKV  191 (305)
T ss_dssp             TTCEEEEEE
T ss_pred             CCCEEEEEe
Confidence            999998643

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.00  E-value=3.6e-10  Score=116.24  Aligned_cols=103  Identities=15%  Similarity=0.028  Sum_probs=83.6

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCc-EEEEEceeeEeec-CCCCceeeEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDV-VTILKGKVEEVEL-PFGIQKVDII  151 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~-i~~~~~d~~~~~~-~~~~~~~D~I  151 (519)
                      .+|.+|||++||+|.+++.+++.  |+++|+++|++ .+++.++++++.|++.++ ++++++|+.++.. .. .++||+|
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~-~~~fD~V  129 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW-GFGFDYV  129 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC-SSCEEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh-CCCCcEE
Confidence            36789999999999999998884  66799999999 699999999999999887 9999999877521 11 1689999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +.++.+       ....++..+.++|+|||+++...
T Consensus       130 ~lDP~g-------~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          130 DLDPFG-------TPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EECCSS-------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECCCc-------CHHHHHHHHHHHhCCCCEEEEEe
Confidence            998831       12345666678899999887655

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.98  E-value=1e-09  Score=114.93  Aligned_cols=111  Identities=16%  Similarity=0.132  Sum_probs=87.4

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDI  150 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~  150 (519)
                      ...++.+|||+|||+|..+..+++.+ ..+|+|+|++ .+++.++++++.+|+.  ++++++|+.++.  ++.  ++||+
T Consensus       243 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~~--~~fD~  318 (429)
T 1sqg_A          243 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGE--QQFDR  318 (429)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHTT--CCEEE
T ss_pred             CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhchhhccc--CCCCE
Confidence            45688999999999999999988874 3699999999 6999999999998874  789999988764  343  68999


Q ss_pred             EEEecccccc---ccch----------------hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCL---FYES----------------MLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l---~~e~----------------~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+++......   ....                ....++..+.++|||||.++...++
T Consensus       319 Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs  376 (429)
T 1sqg_A          319 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS  376 (429)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred             EEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            9986532111   1111                1246788889999999999998887

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.97  E-value=6.2e-10  Score=113.52  Aligned_cols=97  Identities=20%  Similarity=0.192  Sum_probs=73.1

Q ss_pred             CCCCEEEEECCc------ccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC-----
Q psy14674         77 FKGKIVLDIGCG------TGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP-----  142 (519)
Q Consensus        77 ~~~~~VLDiGcG------tG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~-----  142 (519)
                      .++.+|||||||      +|..++.+++.  +..+|+|+|+| +|.        .  ...+++++++|+.++++.     
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~--~~~rI~fv~GDa~dlpf~~~l~~  284 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V--DELRIRTIQGDQNDAEFLDRIAR  284 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G--CBTTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h--cCCCcEEEEecccccchhhhhhc
Confidence            467899999999      66666655543  45699999999 562        1  134699999999886544     


Q ss_pred             -CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        143 -FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       143 -~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                       .  ++||+|+++.. +   +.......+.++.++|||||+++.....
T Consensus       285 ~d--~sFDlVisdgs-H---~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          285 RY--GPFDIVIDDGS-H---INAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             HH--CCEEEEEECSC-C---CHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             cc--CCccEEEECCc-c---cchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence             3  78999999753 2   2245677899999999999999976544

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.95  E-value=1.3e-09  Score=106.18  Aligned_cols=111  Identities=12%  Similarity=0.084  Sum_probs=80.9

Q ss_pred             CCCEEEEECCcc---cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--CCC--Ccee
Q psy14674         78 KGKIVLDIGCGT---GILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--PFG--IQKV  148 (519)
Q Consensus        78 ~~~~VLDiGcGt---G~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--~~~--~~~~  148 (519)
                      ...+|||||||+   |.+...+.+ .+..+|++||.| .|++.|++++...+ ..+++++++|+.+...  ...  .+.|
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~~~~~~~  156 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAPELRDTL  156 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhccccccccc
Confidence            346899999997   344444433 355699999999 69999999886543 3469999999987521  100  0234


Q ss_pred             e-----EEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        149 D-----IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       149 D-----~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |     .|+++.+.|++..+.....++..+.+.|+|||+++.+..+
T Consensus       157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~  202 (277)
T 3giw_A          157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT  202 (277)
T ss_dssp             CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred             CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence            4     5778888888876655678899999999999999976544

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.94  E-value=1.7e-09  Score=110.89  Aligned_cols=106  Identities=16%  Similarity=0.201  Sum_probs=81.1

Q ss_pred             HHhcCC-CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         70 MYHNKH-LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        70 i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      ++.... +.++.+|||||||+|.++..+++. +..+++++|+.++++.|++.       .+++++.+|+.+ ++|.  + 
T Consensus       194 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~p~--~-  262 (368)
T 3reo_A          194 ILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAF-------SGVEHLGGDMFD-GVPK--G-  262 (368)
T ss_dssp             HHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC-------TTEEEEECCTTT-CCCC--C-
T ss_pred             HHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhc-------CCCEEEecCCCC-CCCC--C-
Confidence            444333 566789999999999999988876 45689999996687776532       469999999986 5663  3 


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                       |+|++..+.|++.. .....+++++++.|||||.++....
T Consensus       263 -D~v~~~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~  301 (368)
T 3reo_A          263 -DAIFIKWICHDWSD-EHCLKLLKNCYAALPDHGKVIVAEY  301 (368)
T ss_dssp             -SEEEEESCGGGBCH-HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             -CEEEEechhhcCCH-HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence             99999888665543 3456789999999999998875443

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.93  E-value=1.2e-09  Score=112.07  Aligned_cols=101  Identities=22%  Similarity=0.082  Sum_probs=81.6

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHC---------------CCCCcEEEEEceeeEee
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKN---------------NLSDVVTILKGKVEEVE  140 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~---------------~~~~~i~~~~~d~~~~~  140 (519)
                      ++.+|||+|||+|.+++.+++. |+.+|+++|++ ++++.|+++++.|               ++.+ ++++++|+.++.
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHHH
Confidence            6889999999999999998887 76789999999 6999999999999               8765 999999997752


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ... .++||+|+.++.+.       ...++.++.+.|+|||+++...
T Consensus       126 ~~~-~~~fD~I~lDP~~~-------~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          126 AER-HRYFHFIDLDPFGS-------PMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHS-TTCEEEEEECCSSC-------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Hhc-cCCCCEEEeCCCCC-------HHHHHHHHHHhcCCCCEEEEEe
Confidence            111 15799999876422       2455666778999999887654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.93  E-value=3e-10  Score=110.89  Aligned_cols=99  Identities=13%  Similarity=-0.028  Sum_probs=77.2

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH--CCC-CCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDK--NNL-SDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~--~~~-~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      ..+++|||||||+|.++..+++.+ .+|+++|++ ++++.|++++..  +++ ..+++++.+|+.+..     ++||+|+
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-----~~fD~Ii  144 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-----KKYDLIF  144 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-----CCEEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-----hhCCEEE
Confidence            456899999999999999888887 899999999 699999876532  112 347999999987643     5799999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++..    .    ...++..+.+.|+|||+++.....
T Consensus       145 ~d~~----d----p~~~~~~~~~~L~pgG~lv~~~~~  173 (262)
T 2cmg_A          145 CLQE----P----DIHRIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_dssp             ESSC----C----CHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             ECCC----C----hHHHHHHHHHhcCCCcEEEEEcCC
Confidence            8742    1    123688889999999999975433

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.91  E-value=4.3e-09  Score=107.27  Aligned_cols=112  Identities=14%  Similarity=0.078  Sum_probs=86.9

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .++......+..+|||||||+|.++..++++ +..+++..|..++++.|+++....+ .++|+++.+|+.+.+.    ..
T Consensus       170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~----~~  244 (353)
T 4a6d_A          170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL----PE  244 (353)
T ss_dssp             HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC---CCSEEEEESCTTTSCC----CC
T ss_pred             HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcc-cCceeeecCccccCCC----CC
Confidence            4555556667789999999999999988876 5568888998889999998876544 6789999999875333    45


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +|+++...+.|.... .....+++.+++.|+|||.++..
T Consensus       245 ~D~~~~~~vlh~~~d-~~~~~iL~~~~~al~pgg~lli~  282 (353)
T 4a6d_A          245 ADLYILARVLHDWAD-GKCSHLLERIYHTCKPGGGILVI  282 (353)
T ss_dssp             CSEEEEESSGGGSCH-HHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             ceEEEeeeecccCCH-HHHHHHHHHHHhhCCCCCEEEEE
Confidence            799999888665543 34567899999999999988744

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.91  E-value=1.4e-09  Score=111.70  Aligned_cols=100  Identities=18%  Similarity=0.186  Sum_probs=75.5

Q ss_pred             CCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCC-----------
Q psy14674         79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFG-----------  144 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~-----------  144 (519)
                      +.+|||+|||+|.+++.+|+. +.+|+|+|+| ++++.|+++++.|++. +++++.+|+.++.  +...           
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~  291 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQAMNGVREFNRLQGIDL  291 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred             CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHHHHHhhcccccccccccc
Confidence            578999999999999999985 5699999999 6999999999999985 5999999998752  2210           


Q ss_pred             -CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        145 -IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       145 -~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                       ..+||+|+.++....     ....+    .+.|+++|.++.-.++
T Consensus       292 ~~~~fD~Vv~dPPr~g-----~~~~~----~~~l~~~g~ivyvsc~  328 (369)
T 3bt7_A          292 KSYQCETIFVDPPRSG-----LDSET----EKMVQAYPRILYISCN  328 (369)
T ss_dssp             GGCCEEEEEECCCTTC-----CCHHH----HHHHTTSSEEEEEESC
T ss_pred             ccCCCCEEEECcCccc-----cHHHH----HHHHhCCCEEEEEECC
Confidence             027999999875322     12222    3455688877755554

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.91  E-value=4.4e-09  Score=101.54  Aligned_cols=82  Identities=17%  Similarity=0.268  Sum_probs=65.2

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .+.......++.+|||||||+|.++..+++.+ .+|+|+|++ .|++.|+++....   ++++++++|+.+++++.. ..
T Consensus        21 ~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~~~-~~   95 (244)
T 1qam_A           21 KIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPKN-QS   95 (244)
T ss_dssp             HHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCSS-CC
T ss_pred             HHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCcccC-CC
Confidence            45555666788999999999999999999987 599999999 6999999887542   469999999998766531 34


Q ss_pred             eeEEEEecc
Q psy14674        148 VDIIISEWM  156 (519)
Q Consensus       148 ~D~Ivs~~~  156 (519)
                      | .|+++..
T Consensus        96 ~-~vv~nlP  103 (244)
T 1qam_A           96 Y-KIFGNIP  103 (244)
T ss_dssp             C-EEEEECC
T ss_pred             e-EEEEeCC
Confidence            5 5777654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.91  E-value=6.5e-10  Score=104.66  Aligned_cols=87  Identities=18%  Similarity=0.174  Sum_probs=69.8

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      ..++.+|||||||+|.++..++    .+|+|+|+|+.               +++++.+|+.+++++.  ++||+|++..
T Consensus        65 ~~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~--~~fD~v~~~~  123 (215)
T 2zfu_A           65 RPASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------DPRVTVCDMAQVPLED--ESVDVAVFCL  123 (215)
T ss_dssp             SCTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------STTEEESCTTSCSCCT--TCEEEEEEES
T ss_pred             cCCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------CceEEEeccccCCCCC--CCEeEEEEeh
Confidence            3567899999999999988773    48999999942               2578899998866554  7899999977


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +.+   + .....++..+.++|+|||.++...
T Consensus       124 ~l~---~-~~~~~~l~~~~~~L~~gG~l~i~~  151 (215)
T 2zfu_A          124 SLM---G-TNIRDFLEEANRVLKPGGLLKVAE  151 (215)
T ss_dssp             CCC---S-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hcc---c-cCHHHHHHHHHHhCCCCeEEEEEE
Confidence            644   2 456788999999999999988653

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.90  E-value=2.4e-09  Score=109.57  Aligned_cols=100  Identities=18%  Similarity=0.199  Sum_probs=79.3

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..++.+|||||||+|.++..+++. +..+++++|+.++++.|++.       ++++++.+|+.+ ++|.  +  |+|++.
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~--~--D~v~~~  266 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQF-------PGVTHVGGDMFK-EVPS--G--DTILMK  266 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC-------TTEEEEECCTTT-CCCC--C--SEEEEE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhc-------CCeEEEeCCcCC-CCCC--C--CEEEeh
Confidence            567789999999999999988876 55689999997687776542       469999999987 6663  3  999998


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      .+.|++.. .....+++++++.|||||.++....
T Consensus       267 ~vlh~~~d-~~~~~~L~~~~~~L~pgG~l~i~e~  299 (364)
T 3p9c_A          267 WILHDWSD-QHCATLLKNCYDALPAHGKVVLVQC  299 (364)
T ss_dssp             SCGGGSCH-HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             HHhccCCH-HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            87665543 3456789999999999999875443

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.90  E-value=2.7e-09  Score=105.72  Aligned_cols=82  Identities=26%  Similarity=0.389  Sum_probs=68.8

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .|.....+.++.+|||||||+|.++..+++.+ .+|+|+|++ .|++.|++++...   ++++++++|+.+++++.  .+
T Consensus        41 ~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~~~--~~  114 (295)
T 3gru_A           41 KAVESANLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDLNK--LD  114 (295)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCGGG--SC
T ss_pred             HHHHhcCCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCccc--CC
Confidence            34444567788999999999999999999985 599999999 6999999998742   35999999999877765  57


Q ss_pred             eeEEEEecc
Q psy14674        148 VDIIISEWM  156 (519)
Q Consensus       148 ~D~Ivs~~~  156 (519)
                      ||+|+++..
T Consensus       115 fD~Iv~NlP  123 (295)
T 3gru_A          115 FNKVVANLP  123 (295)
T ss_dssp             CSEEEEECC
T ss_pred             ccEEEEeCc
Confidence            999999865

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.88  E-value=3.1e-09  Score=109.06  Aligned_cols=106  Identities=18%  Similarity=0.137  Sum_probs=80.5

Q ss_pred             HHHhcCC-CCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         69 SMYHNKH-LFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        69 ai~~~~~-~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      .++.... +.++.+|||||||+|.++..+++.. ..+++++|+.++++.|++.       .+++++.+|+.+ ++|   .
T Consensus       199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~---~  267 (372)
T 1fp1_D          199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPL-------SGIEHVGGDMFA-SVP---Q  267 (372)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC-------TTEEEEECCTTT-CCC---C
T ss_pred             HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhc-------CCCEEEeCCccc-CCC---C
Confidence            3444333 5677899999999999999888873 5589999996588777641       349999999976 555   3


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                       ||+|++..+.|++..+ ....+++++.+.|||||.++...
T Consensus       268 -~D~v~~~~~lh~~~d~-~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          268 -GDAMILKAVCHNWSDE-KCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             -EEEEEEESSGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CCEEEEecccccCCHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence             9999998876655432 33478999999999999988553

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.85  E-value=1.2e-08  Score=101.94  Aligned_cols=113  Identities=12%  Similarity=0.048  Sum_probs=83.7

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCC-CceeeE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFG-IQKVDI  150 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~D~  150 (519)
                      ...+|.+|||+|||+|..+..+++.  +..+|+|+|++ .+++.++++++.+|+.+ ++++++|+.++..... .++||.
T Consensus        99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~fD~  177 (309)
T 2b9e_A           99 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDPRYHEVHY  177 (309)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTCGGGTTEEE
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCChHhcCccccccCCCCE
Confidence            4578899999999999999988875  45799999999 69999999999999864 9999999887643210 147999


Q ss_pred             EEEecc----cccccc----------chh-------HHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWM----GYCLFY----------ESM-------LDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~----~~~l~~----------e~~-------l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+++..    +..-.+          ...       ...++....++|+ ||.++-+.|+
T Consensus       178 Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs  236 (309)
T 2b9e_A          178 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS  236 (309)
T ss_dssp             EEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred             EEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence            998643    111110          001       1245777777887 9999988888

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.83  E-value=2.9e-09  Score=108.17  Aligned_cols=106  Identities=18%  Similarity=0.118  Sum_probs=80.0

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCC------CEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGA------ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD  149 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~------~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D  149 (519)
                      .++.+|||+|||+|.++..+++...      .+|+|+|++ .+++.|+.++..+|+  ++.++++|..... +.  ++||
T Consensus       129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~-~~--~~fD  203 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-LV--DPVD  203 (344)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-CC--CCEE
T ss_pred             CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc-cc--CCcc
Confidence            4567999999999999988877631      589999999 699999999988887  3789999986532 22  7899


Q ss_pred             EEEEeccccccccch---------------hHHHHHHHHhcccCcCeEEEccC
Q psy14674        150 IIISEWMGYCLFYES---------------MLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~---------------~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +|++++.........               ....++..+.+.|+|||+++.-.
T Consensus       204 ~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~  256 (344)
T 2f8l_A          204 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV  256 (344)
T ss_dssp             EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence            999997633221111               11246778889999999887544

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.83  E-value=5.2e-09  Score=101.58  Aligned_cols=80  Identities=14%  Similarity=0.251  Sum_probs=65.3

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCC--Ccee
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFG--IQKV  148 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~--~~~~  148 (519)
                      ....+.++.+|||||||+|.++..+++.+ .+|+|+|++ .|++.+++++..   .++++++++|+.+++++..  .+++
T Consensus        23 ~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~~~~~   98 (255)
T 3tqs_A           23 SAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSSVKTDKPL   98 (255)
T ss_dssp             HHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGGSCCSSCE
T ss_pred             HhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHHhccCCCe
Confidence            33456788999999999999999999987 599999999 699999998865   3469999999998866431  2568


Q ss_pred             eEEEEecc
Q psy14674        149 DIIISEWM  156 (519)
Q Consensus       149 D~Ivs~~~  156 (519)
                      | ||++..
T Consensus        99 ~-vv~NlP  105 (255)
T 3tqs_A           99 R-VVGNLP  105 (255)
T ss_dssp             E-EEEECC
T ss_pred             E-EEecCC
Confidence            8 778765

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.82  E-value=4.4e-09  Score=109.53  Aligned_cols=97  Identities=16%  Similarity=0.142  Sum_probs=72.5

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      .++.+|||+|||+|.++..+++.  +..+|+|+|++ .+++.|          .+++++++|+.+....   ++||+|++
T Consensus        38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~~~---~~fD~Ii~  104 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEPG---EAFDLILG  104 (421)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCCS---SCEEEEEE
T ss_pred             CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcCcc---CCCCEEEE
Confidence            45679999999999999999875  45699999999 577766          3589999999875432   68999999


Q ss_pred             ecccccccc---------ch-----------------hHHHHHHHHhcccCcCeEEEcc
Q psy14674        154 EWMGYCLFY---------ES-----------------MLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       154 ~~~~~~l~~---------e~-----------------~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ++.......         +.                 ....++..+.++|+|||.++.-
T Consensus       105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i  163 (421)
T 2ih2_A          105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV  163 (421)
T ss_dssp             CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEE
Confidence            865322211         11                 1225677888999999987643

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.82  E-value=1.8e-10  Score=111.31  Aligned_cols=108  Identities=21%  Similarity=0.220  Sum_probs=78.1

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ....+.++.+|||||||+|.++..+++.+ .+|+|+|++ .|++.|+++++   ..++++++++|+.+++++. .++| .
T Consensus        23 ~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~~~~-~~~f-~   96 (245)
T 1yub_A           23 KQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPN-KQRY-K   96 (245)
T ss_dssp             HHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCC-SSEE-E
T ss_pred             HhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcCccc-CCCc-E
Confidence            33556788899999999999999999987 599999999 69988887764   2356999999998876542 1578 7


Q ss_pred             EEEeccccccccchhHHHH----------H----HHHhcccCcCeEEEccC
Q psy14674        151 IISEWMGYCLFYESMLDTV----------L----YARDKWLATNGLLFPDK  187 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~----------l----~~~~r~LkpgG~lip~~  187 (519)
                      |++++..+..  ...+..+          +    +.+.|+|+|||.+....
T Consensus        97 vv~n~Py~~~--~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           97 IVGNIPYHLS--TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             EEEECCSSSC--HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             EEEeCCcccc--HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            8887643221  1111121          2    55678999999876443

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.80  E-value=9.4e-09  Score=100.57  Aligned_cols=80  Identities=18%  Similarity=0.171  Sum_probs=65.6

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ....+.++ +|||||||+|.++..+++.+ .+|+|+|++ .|++.+++++..    ++++++++|+.+++++.. ..+|.
T Consensus        41 ~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~~~-~~~~~  113 (271)
T 3fut_A           41 EAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWEEV-PQGSL  113 (271)
T ss_dssp             HHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGGGS-CTTEE
T ss_pred             HhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChhhc-cCccE
Confidence            33456678 99999999999999999997 499999999 699999988752    469999999998766531 26899


Q ss_pred             EEEecccc
Q psy14674        151 IISEWMGY  158 (519)
Q Consensus       151 Ivs~~~~~  158 (519)
                      |+++...+
T Consensus       114 iv~NlPy~  121 (271)
T 3fut_A          114 LVANLPYH  121 (271)
T ss_dssp             EEEEECSS
T ss_pred             EEecCccc
Confidence            99988643

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.78  E-value=2e-09  Score=98.02  Aligned_cols=89  Identities=15%  Similarity=0.114  Sum_probs=71.1

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec---CCCCceee
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL---PFGIQKVD  149 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~~D  149 (519)
                      ..+.+|.+|||||||.               +++|+| +|++.|+++...     +++++++|++++++   +.  ++||
T Consensus         8 ~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~~~--~~fD   65 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAHKE--SSFD   65 (176)
T ss_dssp             TTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCCCS--SCEE
T ss_pred             cCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccCCC--CCEe
Confidence            4577899999999996               239999 699999987543     37999999998765   44  7999


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +|++..+.+++.  .....++.+++|+|||||.++..
T Consensus        66 ~V~~~~~l~~~~--~~~~~~l~~~~r~LkpgG~l~~~  100 (176)
T 2ld4_A           66 IILSGLVPGSTT--LHSAEILAEIARILRPGGCLFLK  100 (176)
T ss_dssp             EEEECCSTTCCC--CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEECChhhhcc--cCHHHHHHHHHHHCCCCEEEEEE
Confidence            999977655541  23577899999999999999873

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.76  E-value=1.3e-08  Score=100.45  Aligned_cols=97  Identities=16%  Similarity=0.144  Sum_probs=69.3

Q ss_pred             CCCCCCCEEEEECCcc------cHHHHHHHHcC-CCEEEEEechHHHHHHHHHHHHCCCCCcEEE-EEceeeEeecCCCC
Q psy14674         74 KHLFKGKIVLDIGCGT------GILSMFAAKSG-AARVIGIECSNIVEYAKEIVDKNNLSDVVTI-LKGKVEEVELPFGI  145 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGt------G~ls~~la~~g-~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~-~~~d~~~~~~~~~~  145 (519)
                      ..+.++.+|||+|||+      |. ...+...+ ..+|+|+|+|+.            + .++++ +++|+.++.++   
T Consensus        59 l~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~------------v-~~v~~~i~gD~~~~~~~---  121 (290)
T 2xyq_A           59 LAVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF------------V-SDADSTLIGDCATVHTA---  121 (290)
T ss_dssp             CCCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC------------B-CSSSEEEESCGGGCCCS---
T ss_pred             cCCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC------------C-CCCEEEEECccccCCcc---
Confidence            4567899999999944      66 33333445 469999999954            1 23788 99999876554   


Q ss_pred             ceeeEEEEeccccc--------cccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        146 QKVDIIISEWMGYC--------LFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~--------l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ++||+|+|+.....        ......+..+++.+.++|||||.++...
T Consensus       122 ~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          122 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            68999999754211        1112345678899999999999999643

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.76  E-value=1.6e-08  Score=112.01  Aligned_cols=121  Identities=17%  Similarity=0.152  Sum_probs=87.9

Q ss_pred             HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-------------------------------------------C
Q psy14674         65 TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG-------------------------------------------A  101 (519)
Q Consensus        65 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-------------------------------------------~  101 (519)
                      .+..+++......++..|||.+||+|.+++.+|..+                                           .
T Consensus       177 ~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~  256 (703)
T 3v97_A          177 TLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS  256 (703)
T ss_dssp             HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence            344455555667788899999999999988877642                                           1


Q ss_pred             CEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc-ccccccchhHHHHHHHHhcc---
Q psy14674        102 ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM-GYCLFYESMLDTVLYARDKW---  176 (519)
Q Consensus       102 ~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~-~~~l~~e~~l~~~l~~~~r~---  176 (519)
                      .+|+|+|++ .|++.|++++..+|+.+.|++.++|+.++..+...++||+|++++. +.-+.....+..+...+.+.   
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~  336 (703)
T 3v97_A          257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN  336 (703)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence            379999999 6999999999999999999999999998754432248999999986 22233333445554444444   


Q ss_pred             cCcCeEEEc
Q psy14674        177 LATNGLLFP  185 (519)
Q Consensus       177 LkpgG~lip  185 (519)
                      +.|||.+..
T Consensus       337 ~~~g~~~~i  345 (703)
T 3v97_A          337 QFGGWNLSL  345 (703)
T ss_dssp             HCTTCEEEE
T ss_pred             hCCCCeEEE
Confidence            457987663

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.75  E-value=1e-08  Score=104.38  Aligned_cols=99  Identities=14%  Similarity=0.165  Sum_probs=77.3

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      +.++.+|||||||+|.++..+++. +..+++++|+.++++.|++.      . +++++.+|+.+ ++|   . ||+|++.
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------~-~v~~~~~d~~~-~~p---~-~D~v~~~  253 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGS------N-NLTYVGGDMFT-SIP---N-ADAVLLK  253 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCB------T-TEEEEECCTTT-CCC---C-CSEEEEE
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccC------C-CcEEEeccccC-CCC---C-ccEEEee
Confidence            456789999999999999988876 45589999995588877641      2 39999999865 445   3 9999998


Q ss_pred             ccccccccchhHHHHHHHHhcccCc---CeEEEccC
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLAT---NGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~Lkp---gG~lip~~  187 (519)
                      .+.|++..+ ....+++++.+.|||   ||.++...
T Consensus       254 ~~lh~~~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          254 YILHNWTDK-DCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             SCGGGSCHH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             hhhccCCHH-HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            886665432 344789999999999   99887544

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.74  E-value=7.7e-09  Score=108.73  Aligned_cols=107  Identities=21%  Similarity=0.090  Sum_probs=79.9

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--------------CCCEEEEEech-HHHHHHHHHHHHCCCCC-cEEEEEceeeE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--------------GAARVIGIECS-NIVEYAKEIVDKNNLSD-VVTILKGKVEE  138 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--------------g~~~V~gvD~s-~~~~~A~~~~~~~~~~~-~i~~~~~d~~~  138 (519)
                      ...++.+|||.|||+|.+...+++.              ...+++|+|++ .+++.|+.++..+|+.. .+.++++|...
T Consensus       168 ~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~  247 (445)
T 2okc_A          168 NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE  247 (445)
T ss_dssp             CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTT
T ss_pred             CCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCC
Confidence            3456789999999999998877764              22479999999 69999999998888853 47889999876


Q ss_pred             eecCCCCceeeEEEEeccccccccch--------------hHHHHHHHHhcccCcCeEEE
Q psy14674        139 VELPFGIQKVDIIISEWMGYCLFYES--------------MLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       139 ~~~~~~~~~~D~Ivs~~~~~~l~~e~--------------~l~~~l~~~~r~LkpgG~li  184 (519)
                      ....   ++||+|++++.........              ....++..+.++|||||+++
T Consensus       248 ~~~~---~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a  304 (445)
T 2okc_A          248 KEPS---TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA  304 (445)
T ss_dssp             SCCS---SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred             Cccc---CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEE
Confidence            4333   5899999987633321110              01256777889999999875

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.71  E-value=7.1e-08  Score=89.76  Aligned_cols=102  Identities=18%  Similarity=0.184  Sum_probs=77.1

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC--CCcEEEEEceeeEee-------------c
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL--SDVVTILKGKVEEVE-------------L  141 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~--~~~i~~~~~d~~~~~-------------~  141 (519)
                      +.++|||+|||  ..++.+|+...++|++||.+ +.++.|+++++.+|+  .++|+++.+|+.+..             +
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            56799999985  67788887644699999999 699999999999998  889999999976431             1


Q ss_pred             C---------CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        142 P---------FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       142 ~---------~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +         ...++||+|+.+.-       . ....+....++|+|||+++.+...
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~-------k-~~~~~~~~l~~l~~GG~Iv~DNv~  156 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGR-------F-RVGCALATAFSITRPVTLLFDDYS  156 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSS-------S-HHHHHHHHHHHCSSCEEEEETTGG
T ss_pred             HHHhhhhhccccCCCCCEEEEeCC-------C-chhHHHHHHHhcCCCeEEEEeCCc
Confidence            1         01268999988652       1 113333445899999999988744

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.69  E-value=1.6e-08  Score=103.10  Aligned_cols=99  Identities=13%  Similarity=0.175  Sum_probs=77.0

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      +.++.+|||||||+|.++..+++. +..+++++|++.+++.|++      .. +++++.+|+.+ ++|    .||+|++.
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~-~v~~~~~d~~~-~~~----~~D~v~~~  258 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG------NE-NLNFVGGDMFK-SIP----SADAVLLK  258 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC------CS-SEEEEECCTTT-CCC----CCSEEEEE
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc------CC-CcEEEeCccCC-CCC----CceEEEEc
Confidence            346689999999999999988887 4458999999778877654      22 39999999876 444    49999998


Q ss_pred             ccccccccchhHHHHHHHHhcccCc---CeEEEccC
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLAT---NGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~Lkp---gG~lip~~  187 (519)
                      .+.|++..+ ....+++++.+.|+|   ||.++...
T Consensus       259 ~vlh~~~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          259 WVLHDWNDE-QSLKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             SCGGGSCHH-HHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             ccccCCCHH-HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            886655432 344789999999999   99887543

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.68  E-value=2.2e-08  Score=96.85  Aligned_cols=82  Identities=16%  Similarity=0.241  Sum_probs=64.5

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      |.......++.+|||||||+|.++..+++.|+.+|+|+|++ .|++.++++ .    ..+++++++|+.+++++...+.+
T Consensus        23 iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~~~v~~i~~D~~~~~~~~~~~~~   97 (249)
T 3ftd_A           23 IAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----DERLEVINEDASKFPFCSLGKEL   97 (249)
T ss_dssp             HHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----CTTEEEECSCTTTCCGGGSCSSE
T ss_pred             HHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----CCCeEEEEcchhhCChhHccCCc
Confidence            44445667889999999999999999999876799999999 699999876 1    24699999999988766321234


Q ss_pred             eEEEEeccc
Q psy14674        149 DIIISEWMG  157 (519)
Q Consensus       149 D~Ivs~~~~  157 (519)
                       .|+++...
T Consensus        98 -~vv~NlPy  105 (249)
T 3ftd_A           98 -KVVGNLPY  105 (249)
T ss_dssp             -EEEEECCT
T ss_pred             -EEEEECch
Confidence             77777653

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.68  E-value=1e-08  Score=105.65  Aligned_cols=75  Identities=24%  Similarity=0.191  Sum_probs=64.8

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC--CCCCcEEEEEceeeEe-ec-CCCCceeeEEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN--NLSDVVTILKGKVEEV-EL-PFGIQKVDIII  152 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~--~~~~~i~~~~~d~~~~-~~-~~~~~~~D~Iv  152 (519)
                      +|.+|||+|||+|..++.+++.+. +|+|||+| .|++.|+++++.+  |+ ++++++++|+.+. .. +.  ++||+|+
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~--~~fDvV~  168 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKT--FHPDYIY  168 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHH--HCCSEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccC--CCceEEE
Confidence            489999999999999999998865 99999999 6999999999988  87 5799999999874 21 22  5899999


Q ss_pred             Eecc
Q psy14674        153 SEWM  156 (519)
Q Consensus       153 s~~~  156 (519)
                      +++.
T Consensus       169 lDPP  172 (410)
T 3ll7_A          169 VDPA  172 (410)
T ss_dssp             ECCE
T ss_pred             ECCC
Confidence            9875

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.65  E-value=3.6e-09  Score=102.95  Aligned_cols=83  Identities=20%  Similarity=0.091  Sum_probs=64.4

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH--------HHHHHHHHHHHCCCCCcEEEEEceeeEe-e-cCCC
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN--------IVEYAKEIVDKNNLSDVVTILKGKVEEV-E-LPFG  144 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~--------~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~  144 (519)
                      ...++.+|||+|||+|..++.+|+.|. +|+|+|+++        +++.|+++++.+++.++++++++|+.++ + ++..
T Consensus        80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~  158 (258)
T 2r6z_A           80 NHTAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT  158 (258)
T ss_dssp             TGGGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             CcCCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence            345678999999999999999999865 899999986        4566777777777777799999999875 1 2210


Q ss_pred             CceeeEEEEecccc
Q psy14674        145 IQKVDIIISEWMGY  158 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~  158 (519)
                      .++||+|+++++..
T Consensus       159 ~~~fD~V~~dP~~~  172 (258)
T 2r6z_A          159 QGKPDIVYLDPMYP  172 (258)
T ss_dssp             HCCCSEEEECCCC-
T ss_pred             CCCccEEEECCCCC
Confidence            03799999988643

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.61  E-value=4.8e-08  Score=96.04  Aligned_cols=80  Identities=14%  Similarity=0.150  Sum_probs=62.2

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHcCCC---EEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc-
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKSGAA---RVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ-  146 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~---~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-  146 (519)
                      ....+.++.+|||||||+|.++..+++.+..   +|+|+|++ .|++.|+++.     .++++++++|+.+++++.... 
T Consensus        36 ~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~~~~~~~~  110 (279)
T 3uzu_A           36 AAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFDFGSIARP  110 (279)
T ss_dssp             HHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCCGGGGSCS
T ss_pred             HhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCChhHhccc
Confidence            3345678899999999999999999987542   29999999 6999999883     346999999999886653111 


Q ss_pred             ---eeeEEEEecc
Q psy14674        147 ---KVDIIISEWM  156 (519)
Q Consensus       147 ---~~D~Ivs~~~  156 (519)
                         ..+.||++..
T Consensus       111 ~~~~~~~vv~NlP  123 (279)
T 3uzu_A          111 GDEPSLRIIGNLP  123 (279)
T ss_dssp             SSSCCEEEEEECC
T ss_pred             ccCCceEEEEccC
Confidence               3457888765

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.58  E-value=3.1e-08  Score=98.42  Aligned_cols=80  Identities=30%  Similarity=0.393  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCC-CCceee
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPF-GIQKVD  149 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~-~~~~~D  149 (519)
                      .+.++.+|||+|||+|..+..+++. +..+|+|+|.| +|++.|+++++.++  ++++++++|+.+++  ++. +.++||
T Consensus        23 ~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g~~~~D  100 (301)
T 1m6y_A           23 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKVD  100 (301)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCEE
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcCCCCCC
Confidence            4567889999999999999999887 35699999999 69999999998877  57999999998763  211 114799


Q ss_pred             EEEEecc
Q psy14674        150 IIISEWM  156 (519)
Q Consensus       150 ~Ivs~~~  156 (519)
                      .|++++.
T Consensus       101 ~Vl~D~g  107 (301)
T 1m6y_A          101 GILMDLG  107 (301)
T ss_dssp             EEEEECS
T ss_pred             EEEEcCc
Confidence            9998763

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.51  E-value=3.9e-08  Score=95.27  Aligned_cols=78  Identities=13%  Similarity=0.053  Sum_probs=59.8

Q ss_pred             cCCCCCCCEEEEECCcccHHHHHHHHcCCCE--EEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC---c
Q psy14674         73 NKHLFKGKIVLDIGCGTGILSMFAAKSGAAR--VIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI---Q  146 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~--V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~---~  146 (519)
                      ...+.++.+|||||||+|.++. +++ + .+  |+|+|++ .|++.++++....   ++++++++|+.+++++...   +
T Consensus        16 ~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~~   89 (252)
T 1qyr_A           16 AINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAEKMG   89 (252)
T ss_dssp             HHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHHHHT
T ss_pred             hcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHhhcccC
Confidence            3456778899999999999999 765 3 36  9999999 6999999876532   3699999999987654210   1


Q ss_pred             eeeEEEEecc
Q psy14674        147 KVDIIISEWM  156 (519)
Q Consensus       147 ~~D~Ivs~~~  156 (519)
                      ..|.|+++..
T Consensus        90 ~~~~vvsNlP   99 (252)
T 1qyr_A           90 QPLRVFGNLP   99 (252)
T ss_dssp             SCEEEEEECC
T ss_pred             CceEEEECCC
Confidence            3578999875

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.48  E-value=6.7e-08  Score=93.75  Aligned_cols=88  Identities=13%  Similarity=0.089  Sum_probs=65.0

Q ss_pred             HHHhcCCCCCC--CEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC-------C-CCCcEEEEEceee
Q psy14674         69 SMYHNKHLFKG--KIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN-------N-LSDVVTILKGKVE  137 (519)
Q Consensus        69 ai~~~~~~~~~--~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~-------~-~~~~i~~~~~d~~  137 (519)
                      .+.....+.++  .+|||+|||+|..++.+|+.|+ +|++||.+ .+++.++++++..       + +.++++++++|+.
T Consensus        77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~  155 (258)
T 2oyr_A           77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (258)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred             HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHH
Confidence            33334455667  8999999999999999999877 79999999 5777766665422       2 3356999999998


Q ss_pred             EeecCCCCceeeEEEEecccc
Q psy14674        138 EVELPFGIQKVDIIISEWMGY  158 (519)
Q Consensus       138 ~~~~~~~~~~~D~Ivs~~~~~  158 (519)
                      ++- +...++||+|+++++..
T Consensus       156 ~~L-~~~~~~fDvV~lDP~y~  175 (258)
T 2oyr_A          156 TAL-TDITPRPQVVYLDPMFP  175 (258)
T ss_dssp             HHS-TTCSSCCSEEEECCCCC
T ss_pred             HHH-HhCcccCCEEEEcCCCC
Confidence            752 21114799999998753

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.36  E-value=8.3e-07  Score=87.16  Aligned_cols=112  Identities=16%  Similarity=0.186  Sum_probs=84.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHC--C-C-CCcEEEEEceeeEeecCCCCceeeE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKN--N-L-SDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~--~-~-~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ...++||-||.|.|..+..+.+. +..+|+.||++ .+++.|++.+...  + + ..|++++.+|...+- ....++||+
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l-~~~~~~yDv  160 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFV-NQTSQTFDV  160 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTT-SCSSCCEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHH-hhccccCCE
Confidence            45789999999999999999987 57799999999 5999999886431  1 2 357999999998762 223378999


Q ss_pred             EEEeccccccccch-hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLFYES-MLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+.+........+. .-..+++.+++.|+|||+++-...+
T Consensus       161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s  200 (294)
T 3o4f_A          161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV  200 (294)
T ss_dssp             EEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence            99976432211111 2245678889999999999976555

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.36  E-value=3.7e-07  Score=98.01  Aligned_cols=108  Identities=14%  Similarity=-0.025  Sum_probs=78.1

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc----C---------------CCEEEEEech-HHHHHHHHHHHHCCCCC----cEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS----G---------------AARVIGIECS-NIVEYAKEIVDKNNLSD----VVT  130 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~----g---------------~~~V~gvD~s-~~~~~A~~~~~~~~~~~----~i~  130 (519)
                      ...++.+|||.+||+|.+...+++.    +               ..+++|+|++ .+++.|+.++..+|+.+    ++.
T Consensus       166 ~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~  245 (541)
T 2ar0_A          166 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA  245 (541)
T ss_dssp             CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBS
T ss_pred             ccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCC
Confidence            3456789999999999988877653    1               1379999999 59999999998888764    267


Q ss_pred             EEEceeeEee-cCCCCceeeEEEEeccccccccc-----------hhHHHHHHHHhcccCcCeEEE
Q psy14674        131 ILKGKVEEVE-LPFGIQKVDIIISEWMGYCLFYE-----------SMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       131 ~~~~d~~~~~-~~~~~~~~D~Ivs~~~~~~l~~e-----------~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ++++|..... .+.  ++||+|++++........           ..-..++..+.++|+|||++.
T Consensus       246 I~~gDtL~~~~~~~--~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a  309 (541)
T 2ar0_A          246 IRLGNTLGSDGENL--PKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA  309 (541)
T ss_dssp             EEESCTTSHHHHTS--CCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred             eEeCCCcccccccc--cCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEE
Confidence            8888876532 222  689999999863322110           111256777779999999765

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.30  E-value=1.6e-07  Score=90.55  Aligned_cols=112  Identities=20%  Similarity=0.183  Sum_probs=70.9

Q ss_pred             cCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         73 NKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ...+.++.+|||||||+|.++..+++. ++..|+|+|++ ++....... ...+  .++..+.++++...++.  +++|+
T Consensus        69 k~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~~~dv~~l~~--~~~Dl  143 (277)
T 3evf_A           69 RGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKDKTDIHRLEP--VKCDT  143 (277)
T ss_dssp             TTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEECSCCTTTSCC--CCCSE
T ss_pred             hCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCC--CCeEEEeccceehhcCC--CCccE
Confidence            355677889999999999999998876 77789999998 531111100 0001  12444566654334444  78999


Q ss_pred             EEEeccccccccc-hhHH--HHHHHHhcccCcC-eEEEccCCc
Q psy14674        151 IISEWMGYCLFYE-SMLD--TVLYARDKWLATN-GLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~e-~~l~--~~l~~~~r~Lkpg-G~lip~~~~  189 (519)
                      |+|+...+..... +...  .+++.+.++|+|| |.|+.....
T Consensus       144 VlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          144 LLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             EEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             EEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            9998754411111 1111  2467778999999 999975443

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.24  E-value=4.6e-06  Score=81.67  Aligned_cols=107  Identities=16%  Similarity=0.119  Sum_probs=80.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc------CCCEEEEEechH---------------------------HHHHHHHHHHHC
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS------GAARVIGIECSN---------------------------IVEYAKEIVDKN  123 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~------g~~~V~gvD~s~---------------------------~~~~A~~~~~~~  123 (519)
                      ...+.|||+|+..|..++.++..      ..++|+++|..+                           .++.+++++++.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            45679999999999988776653      256899999531                           367789999999


Q ss_pred             CCC-CcEEEEEceeeEeecCC-CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        124 NLS-DVVTILKGKVEEVELPF-GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       124 ~~~-~~i~~~~~d~~~~~~~~-~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+. ++|+++.|++.+. ++. ..++||+|+.+.-    .++. ....++.+...|+|||+++.+...
T Consensus       185 gl~~~~I~li~Gda~et-L~~~~~~~~d~vfIDaD----~y~~-~~~~Le~~~p~L~pGGiIv~DD~~  246 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDT-LPTAPIDTLAVLRMDGD----LYES-TWDTLTNLYPKVSVGGYVIVDDYM  246 (282)
T ss_dssp             TCCSTTEEEEESCHHHH-STTCCCCCEEEEEECCC----SHHH-HHHHHHHHGGGEEEEEEEEESSCT
T ss_pred             CCCcCceEEEEeCHHHH-HhhCCCCCEEEEEEcCC----cccc-HHHHHHHHHhhcCCCEEEEEcCCC
Confidence            994 8899999999874 222 1268999987652    1222 335678888999999999998864

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.17  E-value=2.4e-06  Score=86.46  Aligned_cols=126  Identities=20%  Similarity=0.215  Sum_probs=87.3

Q ss_pred             HHHHHHHHhcC-CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH---CCC----CCcEEEEEc
Q psy14674         64 MTYRNSMYHNK-HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDK---NNL----SDVVTILKG  134 (519)
Q Consensus        64 ~~y~~ai~~~~-~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~---~~~----~~~i~~~~~  134 (519)
                      ..|.+.+.... ...++++||-||.|.|..+..+.+.+..+|+.||++ .+++.|++.+..   ..+    .++++++.+
T Consensus       190 ~~Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~  269 (381)
T 3c6k_A          190 LAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIE  269 (381)
T ss_dssp             HHHHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEES
T ss_pred             HHHHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehH
Confidence            34666664322 223568999999999999999998877899999999 599999987532   111    246899999


Q ss_pred             eeeEee--cCCCCceeeEEEEecccccc-------ccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        135 KVEEVE--LPFGIQKVDIIISEWMGYCL-------FYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       135 d~~~~~--~~~~~~~~D~Ivs~~~~~~l-------~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+.++-  .....++||+|+.+......       ........+++.+++.|+|||+++-....
T Consensus       270 Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s  333 (381)
T 3c6k_A          270 DCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNC  333 (381)
T ss_dssp             CHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             HHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence            987652  11112689999998642111       11122356788889999999999865443

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.17  E-value=3.2e-07  Score=88.59  Aligned_cols=111  Identities=18%  Similarity=0.183  Sum_probs=68.8

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD  149 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D  149 (519)
                      +...+.++.+|||||||.|.++..+++ .|+..|+|+|++ .+...+... ..  ...++..+..++....++.  +++|
T Consensus        84 eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~--~g~~ii~~~~~~dv~~l~~--~~~D  158 (282)
T 3gcz_A           84 ERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TT--LGWNLIRFKDKTDVFNMEV--IPGD  158 (282)
T ss_dssp             HTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CB--TTGGGEEEECSCCGGGSCC--CCCS
T ss_pred             HhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-cc--CCCceEEeeCCcchhhcCC--CCcC
Confidence            334667888999999999999999885 478889999998 432222110 00  1112333343333223444  7899


Q ss_pred             EEEEeccccccccc-hh--HHHHHHHHhcccCcC--eEEEccC
Q psy14674        150 IIISEWMGYCLFYE-SM--LDTVLYARDKWLATN--GLLFPDK  187 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e-~~--l~~~l~~~~r~Lkpg--G~lip~~  187 (519)
                      +|+|+.....-... +.  .-.+++-+.++|+||  |.|+.-.
T Consensus       159 vVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv  201 (282)
T 3gcz_A          159 TLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV  201 (282)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             EEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence            99998764411101 11  112466667899999  9998543

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.16  E-value=1.9e-06  Score=83.54  Aligned_cols=108  Identities=16%  Similarity=0.119  Sum_probs=70.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc--------C-----CCEEEEEechH----HH-----------HHHHHHHHHC-----
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS--------G-----AARVIGIECSN----IV-----------EYAKEIVDKN-----  123 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~--------g-----~~~V~gvD~s~----~~-----------~~A~~~~~~~-----  123 (519)
                      .++.+|||||+|+|..++.++++        +     ..+++++|..+    ++           +.|+++++..     
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            35579999999999877765432        2     14899999752    22           3566666541     


Q ss_pred             -----CCC---CcEEEEEceeeEeecCCCCc----eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        124 -----NLS---DVVTILKGKVEEVELPFGIQ----KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       124 -----~~~---~~i~~~~~d~~~~~~~~~~~----~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                           .+.   .+++++.+|+.+. ++...+    +||+|+.+.+...-..+-.-..++..+.++|+|||.++-
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~-l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINEL-ISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHH-GGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             chhheeccCCceEEEEEECcHHHH-HhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                 121   3578999999874 221112    799999976432212221235678899999999999984

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.13  E-value=8.2e-06  Score=87.36  Aligned_cols=108  Identities=15%  Similarity=0.086  Sum_probs=78.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc----CCCEEEEEech-HHHHHHHHHHHHCCCC-CcEEEEEceeeEeecC-CCCceee
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS----GAARVIGIECS-NIVEYAKEIVDKNNLS-DVVTILKGKVEEVELP-FGIQKVD  149 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~----g~~~V~gvD~s-~~~~~A~~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~~~~D  149 (519)
                      .++.+|||.+||||.+...+++.    +...++|+|++ .+++.|+.++..+|+. +++.+.++|......| ....+||
T Consensus       220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD  299 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD  299 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred             CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence            46789999999999888777665    35689999999 5999999999988885 4689999998754212 1127899


Q ss_pred             EEEEeccccccc-cc------------------hh-HHHHHHHHhcccC-cCeEEE
Q psy14674        150 IIISEWMGYCLF-YE------------------SM-LDTVLYARDKWLA-TNGLLF  184 (519)
Q Consensus       150 ~Ivs~~~~~~l~-~e------------------~~-l~~~l~~~~r~Lk-pgG~li  184 (519)
                      +|++++....-. ..                  .. --.++..+.+.|+ |||++.
T Consensus       300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a  355 (542)
T 3lkd_A          300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMA  355 (542)
T ss_dssp             EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEE
T ss_pred             EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEE
Confidence            999987532110 00                  00 0135677778999 999764

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.11  E-value=2.3e-06  Score=91.81  Aligned_cols=103  Identities=13%  Similarity=-0.070  Sum_probs=72.3

Q ss_pred             EEEEECCcccHHHHHHHHc--------C--------CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC
Q psy14674         81 IVLDIGCGTGILSMFAAKS--------G--------AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF  143 (519)
Q Consensus        81 ~VLDiGcGtG~ls~~la~~--------g--------~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~  143 (519)
                      +|||.+||||.+...+++.        +        ...++|+|++ .+++.|+.++..+|+..++.+.++|....+.. 
T Consensus       247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~-  325 (544)
T 3khk_A          247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH-  325 (544)
T ss_dssp             EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC-
T ss_pred             eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc-
Confidence            9999999999887766432        1        3489999999 59999999999999876655577776543211 


Q ss_pred             CCceeeEEEEeccccccc-------------------------cch-hHHHHHHHHhcccCcCeEEE
Q psy14674        144 GIQKVDIIISEWMGYCLF-------------------------YES-MLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~-------------------------~e~-~l~~~l~~~~r~LkpgG~li  184 (519)
                      ...+||+|++++....-.                         ... .--.++..+.+.|+|||++.
T Consensus       326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a  392 (544)
T 3khk_A          326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMA  392 (544)
T ss_dssp             TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEE
T ss_pred             ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEE
Confidence            126899999988633210                         000 01146777779999999754

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.10  E-value=5.4e-06  Score=83.61  Aligned_cols=72  Identities=14%  Similarity=0.181  Sum_probs=58.7

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      .+.+|.+|||+||++|.++..+++.|+ +|+|||..+|.....    ..   .+|+++++|+....++.  +++|+|+|+
T Consensus       208 ~l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l~----~~---~~V~~~~~d~~~~~~~~--~~~D~vvsD  277 (375)
T 4auk_A          208 RLANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSLM----DT---GQVTWLREDGFKFRPTR--SNISWMVCD  277 (375)
T ss_dssp             HSCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHHH----TT---TCEEEECSCTTTCCCCS--SCEEEEEEC
T ss_pred             cCCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhhc----cC---CCeEEEeCccccccCCC--CCcCEEEEc
Confidence            367899999999999999999999986 999999886544322    11   35999999998876554  789999998


Q ss_pred             cc
Q psy14674        155 WM  156 (519)
Q Consensus       155 ~~  156 (519)
                      ..
T Consensus       278 m~  279 (375)
T 4auk_A          278 MV  279 (375)
T ss_dssp             CS
T ss_pred             CC
Confidence            76

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.02  E-value=2.2e-06  Score=80.03  Aligned_cols=108  Identities=19%  Similarity=0.221  Sum_probs=70.7

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEc-eeeEeecCCCCceee
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKG-KVEEVELPFGIQKVD  149 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~D  149 (519)
                      +...+.++.+||||||++|.++..++.. |+.+|+|+|+-.+-..--..++..|++ .|+|+++ |+..+  +.  .++|
T Consensus        72 ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn-~v~fk~gvDv~~~--~~--~~~D  146 (267)
T 3p8z_A           72 ERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWN-IVKLMSGKDVFYL--PP--EKCD  146 (267)
T ss_dssp             HTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTT-SEEEECSCCGGGC--CC--CCCS
T ss_pred             HhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcC-ceEEEeccceeec--CC--cccc
Confidence            3446778899999999999999977776 888999999973110000111234554 4999999 87543  33  6799


Q ss_pred             EEEEeccccccccchhH---HHHHHHHhcccCcCeEEEc
Q psy14674        150 IIISEWMGYCLFYESML---DTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l---~~~l~~~~r~LkpgG~lip  185 (519)
                      .|+|+........+-.-   -.+|+-+.++|++ |.++.
T Consensus       147 tllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~  184 (267)
T 3p8z_A          147 TLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI  184 (267)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred             EEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence            99997654222212111   1256777899998 55553

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.99  E-value=7.4e-06  Score=89.90  Aligned_cols=109  Identities=11%  Similarity=0.035  Sum_probs=70.7

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcC----CCEEEEEech-HHHHHH--HHHHHHCCCCCc---EEEEEceeeEeecCCC
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSG----AARVIGIECS-NIVEYA--KEIVDKNNLSDV---VTILKGKVEEVELPFG  144 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g----~~~V~gvD~s-~~~~~A--~~~~~~~~~~~~---i~~~~~d~~~~~~~~~  144 (519)
                      ...++.+|||.|||+|.+...+++..    ..+++|+|++ .+++.|  +.++..+++...   ..+...|+.+.... .
T Consensus       318 ~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~-~  396 (878)
T 3s1s_A          318 PLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPE-D  396 (878)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGG-G
T ss_pred             cCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccc-c
Confidence            34568899999999999999888762    2479999999 588888  555544333221   24444555442111 1


Q ss_pred             CceeeEEEEecccccccc-c-------------------------hhHHHHHHHHhcccCcCeEEE
Q psy14674        145 IQKVDIIISEWMGYCLFY-E-------------------------SMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~-e-------------------------~~l~~~l~~~~r~LkpgG~li  184 (519)
                      .++||+||+++....... .                         .....++..+.++|+|||++.
T Consensus       397 ~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLA  462 (878)
T 3s1s_A          397 FANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVIS  462 (878)
T ss_dssp             GTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEE
T ss_pred             cCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEE
Confidence            268999999986421110 0                         112345677788999999766

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.98  E-value=1.3e-05  Score=81.28  Aligned_cols=114  Identities=17%  Similarity=0.104  Sum_probs=85.0

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCC-----CcEEEEEceeeEee-cCCCC
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLS-----DVVTILKGKVEEVE-LPFGI  145 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~-----~~i~~~~~d~~~~~-~~~~~  145 (519)
                      ....+|.+|||+.+|.|.=+..+++.+ .+.|+|+|++ .-++..+++++..+..     +++.+...|...+. ...  
T Consensus       144 L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~--  221 (359)
T 4fzv_A          144 LGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEG--  221 (359)
T ss_dssp             HCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHST--
T ss_pred             hCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcc--
Confidence            356789999999999999888888774 3479999999 5788888888876653     46888888887653 222  


Q ss_pred             ceeeEEEEeccccc----ccc-c----------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        146 QKVDIIISEWMGYC----LFY-E----------------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~----l~~-e----------------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++||.|+.+..-..    ... +                .....+|....++|||||.++-++|+
T Consensus       222 ~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS  286 (359)
T 4fzv_A          222 DTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS  286 (359)
T ss_dssp             TCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred             ccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence            78999998764211    110 0                11235677778999999999999999

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.84  E-value=6.4e-06  Score=80.00  Aligned_cols=110  Identities=21%  Similarity=0.202  Sum_probs=66.7

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ..+.++++||||||++|.++..+++. |+..|+|+|+. .+...... ..  .....+.....++.-..++.  +++|+|
T Consensus        77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~--~~~~~iv~~~~~~di~~l~~--~~~DlV  151 (300)
T 3eld_A           77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQ--TLGWNIVKFKDKSNVFTMPT--EPSDTL  151 (300)
T ss_dssp             TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CC--BTTGGGEEEECSCCTTTSCC--CCCSEE
T ss_pred             CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-cc--ccCCceEEeecCceeeecCC--CCcCEE
Confidence            44568899999999999999999975 77789999997 32111000 00  00111222332222122333  789999


Q ss_pred             EEeccccccccc--h--hHHHHHHHHhcccCcC-eEEEccCCc
Q psy14674        152 ISEWMGYCLFYE--S--MLDTVLYARDKWLATN-GLLFPDKAS  189 (519)
Q Consensus       152 vs~~~~~~l~~e--~--~l~~~l~~~~r~Lkpg-G~lip~~~~  189 (519)
                      +|+...+ -...  +  ....++.-+.++|+|| |.|+.-...
T Consensus       152 lsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          152 LCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             EECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             eecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            9987644 1111  1  1123466667899999 999865433

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.83  E-value=9.7e-05  Score=75.18  Aligned_cols=108  Identities=15%  Similarity=0.100  Sum_probs=65.9

Q ss_pred             CCEEEEECCcccHHHHHHHHc----------------CCCEEEEEech-H-HHHHHHHHHHHC----------CCCCcEE
Q psy14674         79 GKIVLDIGCGTGILSMFAAKS----------------GAARVIGIECS-N-IVEYAKEIVDKN----------NLSDVVT  130 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~----------------g~~~V~gvD~s-~-~~~~A~~~~~~~----------~~~~~i~  130 (519)
                      ..+|+|+|||+|..++.++..                +.-+|+.-|+. . .-...+......          +...+-.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            579999999999888776211                22367777776 3 433333321100          0000112


Q ss_pred             EEEceeeEe---ecCCCCceeeEEEEeccccccccch-----------------------------------hHHHHHHH
Q psy14674        131 ILKGKVEEV---ELPFGIQKVDIIISEWMGYCLFYES-----------------------------------MLDTVLYA  172 (519)
Q Consensus       131 ~~~~d~~~~---~~~~~~~~~D~Ivs~~~~~~l~~e~-----------------------------------~l~~~l~~  172 (519)
                      ++.+....+   .+|.  +++|+|+|+...|.+...+                                   ++..+++.
T Consensus       133 f~~gvpgSFy~rlfP~--~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~  210 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPA--RTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA  210 (374)
T ss_dssp             EEEEEESCTTSCCSCT--TCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCC--cceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            333322221   3455  8999999998877765221                                   45668999


Q ss_pred             HhcccCcCeEEEccCC
Q psy14674        173 RDKWLATNGLLFPDKA  188 (519)
Q Consensus       173 ~~r~LkpgG~lip~~~  188 (519)
                      +.+.|+|||.++....
T Consensus       211 ra~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          211 RAAEVKRGGAMFLVCL  226 (374)
T ss_dssp             HHHHEEEEEEEEEEEE
T ss_pred             HHHHhCCCCEEEEEEe
Confidence            9999999999985543

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.82  E-value=2.9e-05  Score=74.99  Aligned_cols=111  Identities=20%  Similarity=0.219  Sum_probs=70.8

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHH-HHHHHHHHHHCCCCCcEEEEEc-eeeEeecCCCCc
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKG-KVEEVELPFGIQ  146 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~-~~~A~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~  146 (519)
                      |.+...+.++.+||||||++|.++.+++.. |+.+|+|+|+... .+ --..++..++. -|.++.+ |+..++  .  .
T Consensus        86 i~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he-~P~~~~ql~w~-lV~~~~~~Dv~~l~--~--~  159 (321)
T 3lkz_A           86 LVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHE-EPQLVQSYGWN-IVTMKSGVDVFYRP--S--E  159 (321)
T ss_dssp             HHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSC-CCCCCCBTTGG-GEEEECSCCTTSSC--C--C
T ss_pred             HHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCcc-CcchhhhcCCc-ceEEEeccCHhhCC--C--C
Confidence            334456778889999999999999977766 8889999999721 00 00000122322 2888887 776543  2  5


Q ss_pred             eeeEEEEeccccccccchhH---HHHHHHHhcccCcC-eEEEcc
Q psy14674        147 KVDIIISEWMGYCLFYESML---DTVLYARDKWLATN-GLLFPD  186 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l---~~~l~~~~r~Lkpg-G~lip~  186 (519)
                      ++|+|+|+........+-.-   -.+|+-+.++|++| |.++.-
T Consensus       160 ~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~K  203 (321)
T 3lkz_A          160 CCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVK  203 (321)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEE
Confidence            79999997753322212111   12566667899988 777643

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.74  E-value=3.4e-05  Score=74.85  Aligned_cols=77  Identities=22%  Similarity=0.334  Sum_probs=61.3

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cC-CCCceee
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LP-FGIQKVD  149 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~~~~D  149 (519)
                      ..+.++..+||.+||.|..+..+++. ..+|+|+|.+ .+++.|++ ++.    ++++++++++.++.  +. .+.+++|
T Consensus        18 L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g~~~vD   91 (285)
T 1wg8_A           18 LAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALGVERVD   91 (285)
T ss_dssp             HTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred             hCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcCCCCcC
Confidence            34568899999999999999999988 4599999999 59999988 543    47999999998873  11 1125799


Q ss_pred             EEEEecc
Q psy14674        150 IIISEWM  156 (519)
Q Consensus       150 ~Ivs~~~  156 (519)
                      .|+++..
T Consensus        92 gIL~DLG   98 (285)
T 1wg8_A           92 GILADLG   98 (285)
T ss_dssp             EEEEECS
T ss_pred             EEEeCCc
Confidence            9998753

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.60  E-value=7.6e-05  Score=70.90  Aligned_cols=105  Identities=20%  Similarity=0.231  Sum_probs=62.2

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HH--HHHHHHHHHHCCCCCcEEEEEc-eeeEeecCCCCc
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NI--VEYAKEIVDKNNLSDVVTILKG-KVEEVELPFGIQ  146 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~--~~~A~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~  146 (519)
                      +..-+.++.+|||+||+.|.++..+++. +...|.|.++. ..  .....   ...|+ +-++++++ |+.++  +.  .
T Consensus        67 eK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~---~~~Gv-~~i~~~~G~Df~~~--~~--~  138 (269)
T 2px2_A           67 ERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM---QSYGW-NIVTMKSGVDVFYK--PS--E  138 (269)
T ss_dssp             HTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC---CSTTG-GGEEEECSCCGGGS--CC--C
T ss_pred             HcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc---cCCCc-eEEEeeccCCccCC--CC--C
Confidence            3345678999999999999999999986 33233444433 10  00000   00111 22566667 88763  22  5


Q ss_pred             eeeEEEEeccccccc----cchhHHHHHHHHhcccCcCe-EEEc
Q psy14674        147 KVDIIISEWMGYCLF----YESMLDTVLYARDKWLATNG-LLFP  185 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~----~e~~l~~~l~~~~r~LkpgG-~lip  185 (519)
                      ++|+|+|+.....-.    +...+. +++-+.++|+||| .|+.
T Consensus       139 ~~DvVLSDMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~Fvv  181 (269)
T 2px2_A          139 ISDTLLCDIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCI  181 (269)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEE
T ss_pred             CCCEEEeCCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEEEE
Confidence            899999987543111    111122 4555668999999 7774

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.58  E-value=7.3e-05  Score=64.97  Aligned_cols=59  Identities=17%  Similarity=0.210  Sum_probs=44.6

Q ss_pred             CCCCEEEEECCccc-HHHHHHHH-cCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTG-ILSMFAAK-SGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG-~ls~~la~-~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      .++.+|||||||+| ..+..+++ .|. .|+|+|+++ .++                +++.|+.+..+. .-+.||+|.+
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~----------------~v~dDiF~P~~~-~Y~~~DLIYs   95 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG----------------IVRDDITSPRME-IYRGAALIYS   95 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT----------------EECCCSSSCCHH-HHTTEEEEEE
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc----------------eEEccCCCCccc-ccCCcCEEEE
Confidence            45679999999999 59999997 777 899999994 333                777888663221 0037999977

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.48  E-value=0.00019  Score=70.94  Aligned_cols=46  Identities=37%  Similarity=0.525  Sum_probs=42.0

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN  123 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~  123 (519)
                      .+|..|||++||+|..+..+++.|. +++|+|++ .+++.|+++++..
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            5788999999999999999999976 99999999 6999999998764

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.47  E-value=0.00031  Score=71.53  Aligned_cols=108  Identities=13%  Similarity=0.072  Sum_probs=67.0

Q ss_pred             CCEEEEECCcccHHHHHHHHc------------------CCCEEEEEech--HHHHHHH------HH-HHHCCCCCcEEE
Q psy14674         79 GKIVLDIGCGTGILSMFAAKS------------------GAARVIGIECS--NIVEYAK------EI-VDKNNLSDVVTI  131 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~------------------g~~~V~gvD~s--~~~~~A~------~~-~~~~~~~~~i~~  131 (519)
                      ..+|+|+||++|..++.+...                  +.-+|+.-|+.  +.-...+      +. .+..|-..+.-|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            578999999999887765543                  22367888875  2211111      11 122332112355


Q ss_pred             EEceeeEe---ecCCCCceeeEEEEeccccccccch------------------------------------hHHHHHHH
Q psy14674        132 LKGKVEEV---ELPFGIQKVDIIISEWMGYCLFYES------------------------------------MLDTVLYA  172 (519)
Q Consensus       132 ~~~d~~~~---~~~~~~~~~D~Ivs~~~~~~l~~e~------------------------------------~l~~~l~~  172 (519)
                      +.+....+   .+|.  +++|+|+|+...|.+...+                                    ++..+|+.
T Consensus       133 ~~gvpgSFy~rlfp~--~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~  210 (384)
T 2efj_A          133 IGAMPGSFYSRLFPE--ESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRI  210 (384)
T ss_dssp             EEECCSCTTSCCSCT--TCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCC--CceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            65544443   4555  8999999998877654321                                    22345888


Q ss_pred             HhcccCcCeEEEccCC
Q psy14674        173 RDKWLATNGLLFPDKA  188 (519)
Q Consensus       173 ~~r~LkpgG~lip~~~  188 (519)
                      +.+.|+|||+++....
T Consensus       211 Ra~eL~pGG~mvl~~~  226 (384)
T 2efj_A          211 HSEELISRGRMLLTFI  226 (384)
T ss_dssp             HHHHEEEEEEEEEEEE
T ss_pred             HHHHhccCCeEEEEEe
Confidence            8999999999985543

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.39  E-value=0.00017  Score=69.56  Aligned_cols=107  Identities=16%  Similarity=0.144  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHh-cCCCCCCCEEEEECC------cccHHHHHHHHcCC--CEEEEEechHHHHHHHHHHHHCCCCCcEEEE
Q psy14674         62 RTMTYRNSMYH-NKHLFKGKIVLDIGC------GTGILSMFAAKSGA--ARVIGIECSNIVEYAKEIVDKNNLSDVVTIL  132 (519)
Q Consensus        62 r~~~y~~ai~~-~~~~~~~~~VLDiGc------GtG~ls~~la~~g~--~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~  132 (519)
                      ......+.+-. ......|.+|||+|+      -.|.  ..+++.+.  ..|+++|+.++..          ..+  .++
T Consensus        92 kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s----------da~--~~I  157 (344)
T 3r24_A           92 KYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS----------DAD--STL  157 (344)
T ss_dssp             HHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC----------SSS--EEE
T ss_pred             HHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc----------CCC--eEE
Confidence            33333444422 345678999999997      3444  34444433  3999999986331          112  459


Q ss_pred             EceeeEeecCCCCceeeEEEEecc----cccccc-----chhHHHHHHHHhcccCcCeEEEcc
Q psy14674        133 KGKVEEVELPFGIQKVDIIISEWM----GYCLFY-----ESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       133 ~~d~~~~~~~~~~~~~D~Ivs~~~----~~~l~~-----e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ++|+.++...   ++||+|+|+..    ++ ...     ....+.+++-+.+.|+|||.|+.-
T Consensus       158 qGD~~~~~~~---~k~DLVISDMAPNtTG~-~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK  216 (344)
T 3r24_A          158 IGDCATVHTA---NKWDLIISDMYDPRTKH-VTKENDSKEGFFTYLCGFIKQKLALGGSIAVK  216 (344)
T ss_dssp             ESCGGGEEES---SCEEEEEECCCCTTSCS-SCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EccccccccC---CCCCEEEecCCCCcCCc-cccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence            9998776554   78999999764    22 111     224566677778899999999843

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.36  E-value=0.0001  Score=74.56  Aligned_cols=109  Identities=17%  Similarity=0.151  Sum_probs=69.3

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-----------------CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-----------------GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV  139 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-----------------g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~  139 (519)
                      +.-+|+|+||++|..++.+...                 +.-+|+.-|+. +....+-+.+....-..+..++.+....+
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            3468999999999766644332                 12378899987 44444333332211001235555544442


Q ss_pred             ---ecCCCCceeeEEEEeccccccccc------------------------------hhHHHHHHHHhcccCcCeEEEcc
Q psy14674        140 ---ELPFGIQKVDIIISEWMGYCLFYE------------------------------SMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       140 ---~~~~~~~~~D~Ivs~~~~~~l~~e------------------------------~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                         .+|.  +++|+|+|+...|.+...                              .++..+|+.+.+.|+|||+++..
T Consensus       131 y~rlfp~--~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          131 YGRLFPR--NTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             SSCCSCT--TCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hhccCCC--CceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence               4565  899999998876665431                              24556799999999999999855


Q ss_pred             CC
Q psy14674        187 KA  188 (519)
Q Consensus       187 ~~  188 (519)
                      ..
T Consensus       209 ~~  210 (359)
T 1m6e_X          209 IL  210 (359)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.75  E-value=0.0015  Score=63.06  Aligned_cols=48  Identities=25%  Similarity=0.380  Sum_probs=41.7

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL  125 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~  125 (519)
                      .+|..|||..||+|..+..+++.|. +++|+|++ .+++.|+++++.+++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC---
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhccC
Confidence            6789999999999999999999876 99999999 599999999987653

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=96.72  E-value=0.0029  Score=67.47  Aligned_cols=82  Identities=21%  Similarity=0.117  Sum_probs=58.5

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc----C----------CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS----G----------AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV  139 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~----g----------~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~  139 (519)
                      ...++.+|+|-.||||.+...+.+.    +          ...++|+|++ .+...|+.++--.|... ..+..+|....
T Consensus       214 ~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~-~~I~~~dtL~~  292 (530)
T 3ufb_A          214 DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY-PRIDPENSLRF  292 (530)
T ss_dssp             CCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC-CEEECSCTTCS
T ss_pred             ccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc-ccccccccccC
Confidence            3456779999999999887766542    1          2369999999 58999998887777753 35667776543


Q ss_pred             ecCC--CCceeeEEEEeccc
Q psy14674        140 ELPF--GIQKVDIIISEWMG  157 (519)
Q Consensus       140 ~~~~--~~~~~D~Ivs~~~~  157 (519)
                      +...  ...+||+|++++..
T Consensus       293 ~~~~~~~~~~fD~Il~NPPf  312 (530)
T 3ufb_A          293 PLREMGDKDRVDVILTNPPF  312 (530)
T ss_dssp             CGGGCCGGGCBSEEEECCCS
T ss_pred             chhhhcccccceEEEecCCC
Confidence            2211  12579999999863

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.56  E-value=0.00088  Score=64.96  Aligned_cols=108  Identities=14%  Similarity=0.073  Sum_probs=75.2

Q ss_pred             HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-e--
Q psy14674         65 TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-E--  140 (519)
Q Consensus        65 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~--  140 (519)
                      .|.+.|..    ..+..+||+-+|||.+++.+.+. ..+++.+|.+ ..++..+++++.   .++++++..|.... .  
T Consensus        82 ~yf~~l~~----~n~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l  153 (283)
T 2oo3_A           82 EYISVIKQ----INLNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNAL  153 (283)
T ss_dssp             HHHHHHHH----HSSSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHH
T ss_pred             HHHHHHHH----hcCCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHh
Confidence            45555533    24567899999999999999884 5799999999 578888877754   35799999997553 1  


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhc--ccCcCeEEE
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDK--WLATNGLLF  184 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r--~LkpgG~li  184 (519)
                      .+. ..+||+|+.++....   ......++..+.+  .+.|+|+++
T Consensus       154 ~~~-~~~fdLVfiDPPYe~---k~~~~~vl~~L~~~~~r~~~Gi~v  195 (283)
T 2oo3_A          154 LPP-PEKRGLIFIDPSYER---KEEYKEIPYAIKNAYSKFSTGLYC  195 (283)
T ss_dssp             CSC-TTSCEEEEECCCCCS---TTHHHHHHHHHHHHHHHCTTSEEE
T ss_pred             cCC-CCCccEEEECCCCCC---CcHHHHHHHHHHHhCccCCCeEEE
Confidence            121 157999999986321   1344555544433  567899877

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.48  E-value=0.0047  Score=61.28  Aligned_cols=79  Identities=18%  Similarity=0.246  Sum_probs=60.3

Q ss_pred             hcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCC-CC
Q psy14674         72 HNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPF-GI  145 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~-~~  145 (519)
                      ....+.+|..++|..||.|..+..+++.  +..+|+|+|.+ ++++.|+ ++    ..+++++++++..++.  ++. +.
T Consensus        51 ~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~g~  125 (347)
T 3tka_A           51 NGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAERDL  125 (347)
T ss_dssp             HHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHHTTC
T ss_pred             HhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHhcCC
Confidence            3456788999999999999999988876  35699999999 5888884 33    2468999999988762  111 00


Q ss_pred             -ceeeEEEEec
Q psy14674        146 -QKVDIIISEW  155 (519)
Q Consensus       146 -~~~D~Ivs~~  155 (519)
                       +++|.|+.+.
T Consensus       126 ~~~vDgILfDL  136 (347)
T 3tka_A          126 IGKIDGILLDL  136 (347)
T ss_dssp             TTCEEEEEEEC
T ss_pred             CCcccEEEECC
Confidence             3699998875

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.10  E-value=0.0066  Score=61.11  Aligned_cols=59  Identities=19%  Similarity=0.165  Sum_probs=48.5

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE  140 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~  140 (519)
                      ++..|||||.|.|.++..+++. .+++|++||++ .++...++.. .   .++++++.+|+.++.
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~l~~~  118 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDPYDWS  118 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCTTCHH
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCccchh
Confidence            4689999999999999999975 45699999999 6888877765 2   256999999996653

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.08  E-value=0.016  Score=58.04  Aligned_cols=122  Identities=13%  Similarity=0.176  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCC---------------
Q psy14674         61 VRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNN---------------  124 (519)
Q Consensus        61 ~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~---------------  124 (519)
                      .|+..+.+.+.......+...|+.+|||....+..+... +..+++-||..++++.-++.+...+               
T Consensus        80 ~Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~  159 (334)
T 1rjd_A           80 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAK  159 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCC
T ss_pred             HHHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccc
Confidence            455555555433221135679999999999888877764 3346777777667777777776652               


Q ss_pred             -----CCCcEEEEEceeeEeec-----CC--CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        125 -----LSDVVTILKGKVEEVEL-----PF--GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       125 -----~~~~i~~~~~d~~~~~~-----~~--~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                           ..++..++.+|+.+...     ..  ......+++++.+..++..+ ....+++.+.... |+|.++
T Consensus       160 ~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~-~~~~ll~~ia~~~-~~~~~v  229 (334)
T 1rjd_A          160 SPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNN-ESQLLINTIMSKF-SHGLWI  229 (334)
T ss_dssp             TTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH-HHHHHHHHHHHHC-SSEEEE
T ss_pred             cccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHH-HHHHHHHHHHhhC-CCcEEE
Confidence                 13678999999887421     10  12568999999988777654 4667777776665 677654

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.82  E-value=0.02  Score=57.86  Aligned_cols=98  Identities=18%  Similarity=0.266  Sum_probs=62.0

Q ss_pred             HHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ec
Q psy14674         70 MYHNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----EL  141 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~  141 (519)
                      +.....+.+|.+||-+|+|. |.++..+|++ |+.+|+++|.+ +-++.+++.    |..   .++..+-.++     ..
T Consensus       182 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~~  254 (371)
T 1f8f_A          182 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKEI  254 (371)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC---EEecCCccCHHHHHHHh
Confidence            33456788999999999876 7777777765 88789999998 567776543    332   2232211111     11


Q ss_pred             CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ..  +.+|+|+...-     .    ...+....+.|+++|.++.
T Consensus       255 ~~--gg~D~vid~~g-----~----~~~~~~~~~~l~~~G~iv~  287 (371)
T 1f8f_A          255 TD--GGVNFALESTG-----S----PEILKQGVDALGILGKIAV  287 (371)
T ss_dssp             TT--SCEEEEEECSC-----C----HHHHHHHHHTEEEEEEEEE
T ss_pred             cC--CCCcEEEECCC-----C----HHHHHHHHHHHhcCCEEEE
Confidence            21  37999975332     1    1234455689999999873

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=95.63  E-value=0.015  Score=59.21  Aligned_cols=71  Identities=20%  Similarity=0.130  Sum_probs=53.8

Q ss_pred             CEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC------CCceeeEEE
Q psy14674         80 KIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF------GIQKVDIII  152 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~------~~~~~D~Iv  152 (519)
                      .+|||+-||.|.+++-+.++|...|.++|++ .+++..+.+..      ...++.+|+.++....      ....+|+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~   76 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDGII   76 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence            4799999999999999999999888999999 46666666532      2577888988763110      115799999


Q ss_pred             Eecc
Q psy14674        153 SEWM  156 (519)
Q Consensus       153 s~~~  156 (519)
                      ..+.
T Consensus        77 ggpP   80 (376)
T 3g7u_A           77 GGPP   80 (376)
T ss_dssp             ECCC
T ss_pred             ecCC
Confidence            8654

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.55  E-value=0.028  Score=57.79  Aligned_cols=62  Identities=15%  Similarity=0.102  Sum_probs=49.8

Q ss_pred             CCCCCEEEEECCcccHHHHHHH-Hc-C-CCEEEEEech-HHHHHHHHHHHH--CCCC-CcEEEEEceee
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAA-KS-G-AARVIGIECS-NIVEYAKEIVDK--NNLS-DVVTILKGKVE  137 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la-~~-g-~~~V~gvD~s-~~~~~A~~~~~~--~~~~-~~i~~~~~d~~  137 (519)
                      +.++..|+||||+.|..+..++ +. + .++|+++|++ ...+..+++++.  |+.. ++++++..-+.
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            4688999999999999999877 44 3 3699999999 589999999988  4433 67888876554

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.14  E-value=0.022  Score=56.84  Aligned_cols=69  Identities=20%  Similarity=0.236  Sum_probs=52.9

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .+.+|||+.||.|.+++.+.++|+..|.++|++ .+++..+.+....     .   .+|+.++.... ...+|+|+..+
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~-~~~~D~l~~gp   79 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKT-IPDHDILCAGF   79 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGG-SCCCSEEEEEC
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhh-CCCCCEEEECC
Confidence            457999999999999999999999889999999 5777777775321     1   57877663221 13589999865

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.13  E-value=0.0068  Score=60.94  Aligned_cols=69  Identities=22%  Similarity=0.166  Sum_probs=53.4

Q ss_pred             CEEEEECCcccHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec---CCCCceeeEEEE
Q psy14674         80 KIVLDIGCGTGILSMFAAKSG--AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL---PFGIQKVDIIIS  153 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~~D~Ivs  153 (519)
                      .+|||+.||.|.+++.+.++|  +..|.++|++ .+++..+.+...      ..++.+|+.++..   +.  ..+|+|+.
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~~--~~~D~l~~   74 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFDR--LSFDMILM   74 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHHH--HCCSEEEE
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcCc--CCcCEEEE
Confidence            489999999999999999998  5689999999 578887777532      3467788887631   21  26899998


Q ss_pred             ecc
Q psy14674        154 EWM  156 (519)
Q Consensus       154 ~~~  156 (519)
                      .+.
T Consensus        75 gpP   77 (343)
T 1g55_A           75 SPP   77 (343)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            664

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=94.81  E-value=0.078  Score=51.98  Aligned_cols=108  Identities=16%  Similarity=0.142  Sum_probs=64.8

Q ss_pred             CCEEEEECCcccHHHHHHH----Hc-CCC--EEEEEech---------H-HHHHHHHHHHHCCC--CC--cEEEEEceee
Q psy14674         79 GKIVLDIGCGTGILSMFAA----KS-GAA--RVIGIECS---------N-IVEYAKEIVDKNNL--SD--VVTILKGKVE  137 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la----~~-g~~--~V~gvD~s---------~-~~~~A~~~~~~~~~--~~--~i~~~~~d~~  137 (519)
                      .-+|||+|-|+|...+.+.    +. +..  +.+++|..         + ..+..+........  .+  .+++..+|+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            3589999999998654332    22 222  45677751         1 22233333332110  12  2467788887


Q ss_pred             Ee--ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        138 EV--ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       138 ~~--~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      +.  .++.  .++|+|+-+.+..--..+-.-..+++.+.++++|||.++--++
T Consensus       177 ~~l~~l~~--~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYta  227 (308)
T 3vyw_A          177 KRIKEVEN--FKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSS  227 (308)
T ss_dssp             HHGGGCCS--CCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCC
T ss_pred             HHHhhhcc--cceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeC
Confidence            64  2232  5799999988654433333345789999999999999984443

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=94.80  E-value=0.17  Score=48.36  Aligned_cols=104  Identities=20%  Similarity=0.277  Sum_probs=68.4

Q ss_pred             CCEEEEECCcccHHHHHHHHc--------CCCEEEEEechH-H------------------------HHHHHHHH-----
Q psy14674         79 GKIVLDIGCGTGILSMFAAKS--------GAARVIGIECSN-I------------------------VEYAKEIV-----  120 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~--------g~~~V~gvD~s~-~------------------------~~~A~~~~-----  120 (519)
                      ...|+|+|+-.|..++.+++.        ..++|+++|.-+ +                        .+..++.+     
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            458999999999877765542        247999999310 0                        11122222     


Q ss_pred             -HHCCC-CCcEEEEEceeeEee------cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        121 -DKNNL-SDVVTILKGKVEEVE------LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       121 -~~~~~-~~~i~~~~~d~~~~~------~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                       +..+. .++|+++.|++.+.-      .+.  +++|+|+.+.=   . ++. ....++.+...|+|||+++.+...
T Consensus       150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~--~~~dlv~ID~D---~-Y~~-t~~~le~~~p~l~~GGvIv~DD~~  219 (257)
T 3tos_A          150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQ--TVIALAYFDLD---L-YEP-TKAVLEAIRPYLTKGSIVAFDELD  219 (257)
T ss_dssp             TSTTTTSCCSEEEEESCHHHHHHHHHHHCTT--CCEEEEEECCC---C-HHH-HHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             hhhcCCCCCcEEEEEecHHHHHHHHHHhCCC--CceEEEEEcCc---c-cch-HHHHHHHHHHHhCCCcEEEEcCCC
Confidence             12344 478999999998751      122  57999987652   1 222 334567778999999999999864

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=94.73  E-value=0.19  Score=49.59  Aligned_cols=127  Identities=9%  Similarity=0.033  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCC--CCcEEEEEceee
Q psy14674         60 EVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNL--SDVVTILKGKVE  137 (519)
Q Consensus        60 ~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~--~~~i~~~~~d~~  137 (519)
                      ..|+..+.+++..... .....|++||||-=..+..+......+|+=||..++++..++.+...+.  .++..++.+|+.
T Consensus        85 ~~Rt~~~d~~v~~~~~-~g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~  163 (310)
T 2uyo_A           85 AVRTNFFDTYFNNAVI-DGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLR  163 (310)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHHH-hCCCeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchH
Confidence            3455555555533221 1235799999998766555542223588888866788888888876542  456889999987


Q ss_pred             EeecCC-------CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        138 EVELPF-------GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       138 ~~~~~~-------~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      + .+..       .....=+++++.+.+++..+ ....+++.+...+.||+.++.+..+
T Consensus       164 d-~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~~-~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          164 Q-DWPPALRSAGFDPSARTAWLAEGLLMYLPAT-AQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             S-CHHHHHHHTTCCTTSCEEEEECSCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             h-hHHHHHHhccCCCCCCEEEEEechHhhCCHH-HHHHHHHHHHHhCCCCeEEEEEecC
Confidence            5 2110       01356788888888877665 5678888888888999999988765

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.28  E-value=0.031  Score=56.62  Aligned_cols=96  Identities=21%  Similarity=0.202  Sum_probs=59.7

Q ss_pred             hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEc---eeeE-e-e---
Q psy14674         72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG---KVEE-V-E---  140 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~---d~~~-~-~---  140 (519)
                      ....+.+|.+||-+|+|. |.++..+|++ |+.+|+++|.+ +-.+.+++    .|..   .++..   +..+ + .   
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~i~~~~~  248 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGAT---ATVDPSAGDVVEAIAGPVG  248 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS---EEECTTSSCHHHHHHSTTS
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC---EEECCCCcCHHHHHHhhhh
Confidence            345678899999999864 5666666665 88799999999 56666665    3432   22221   1111 0 1   


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      +..  +.+|+|+-..-     .    ...+....++|++||.++.
T Consensus       249 ~~~--gg~Dvvid~~G-----~----~~~~~~~~~~l~~~G~vv~  282 (370)
T 4ej6_A          249 LVP--GGVDVVIECAG-----V----AETVKQSTRLAKAGGTVVI  282 (370)
T ss_dssp             SST--TCEEEEEECSC-----C----HHHHHHHHHHEEEEEEEEE
T ss_pred             ccC--CCCCEEEECCC-----C----HHHHHHHHHHhccCCEEEE
Confidence            111  47999986321     1    1224445578999999874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.04  E-value=0.037  Score=55.62  Aligned_cols=95  Identities=25%  Similarity=0.225  Sum_probs=58.7

Q ss_pred             cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEce---eeEe-----ec
Q psy14674         73 NKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK---VEEV-----EL  141 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d---~~~~-----~~  141 (519)
                      ...+.+|.+||-+|+|. |.++..+|++ |+++|+++|.+ +-++.+++    .|..   .++..+   ..++     ..
T Consensus       166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~  238 (356)
T 1pl8_A          166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQ  238 (356)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHHH
Confidence            34678899999999875 6677767664 77799999998 45666653    4543   223221   0111     01


Q ss_pred             CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ..  +.+|+|+-..-     ..    ..+....++|++||.++.
T Consensus       239 ~~--~g~D~vid~~g-----~~----~~~~~~~~~l~~~G~iv~  271 (356)
T 1pl8_A          239 LG--CKPEVTIECTG-----AE----ASIQAGIYATRSGGTLVL  271 (356)
T ss_dssp             HT--SCCSEEEECSC-----CH----HHHHHHHHHSCTTCEEEE
T ss_pred             hC--CCCCEEEECCC-----Ch----HHHHHHHHHhcCCCEEEE
Confidence            11  46999976331     11    123444578999999873

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.89  E-value=0.033  Score=56.53  Aligned_cols=98  Identities=24%  Similarity=0.262  Sum_probs=60.7

Q ss_pred             HHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEce--eeEe-----
Q psy14674         70 MYHNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK--VEEV-----  139 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d--~~~~-----  139 (519)
                      +.....+.+|.+||-+|+|. |.++..+|++ |+.+|+++|.+ +-++.|++    .|..   .++...  -.++     
T Consensus       185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~  257 (378)
T 3uko_A          185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN---EFVNPKDHDKPIQEVIV  257 (378)
T ss_dssp             HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC---EEECGGGCSSCHHHHHH
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---EEEccccCchhHHHHHH
Confidence            44556788999999999863 6666666665 88799999988 56666653    4543   222211  0111     


Q ss_pred             ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcC-eEEEc
Q psy14674        140 ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATN-GLLFP  185 (519)
Q Consensus       140 ~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~Lkpg-G~lip  185 (519)
                      .+..  +.+|+|+-..-     .    ...+....+.|++| |.++.
T Consensus       258 ~~~~--gg~D~vid~~g-----~----~~~~~~~~~~l~~g~G~iv~  293 (378)
T 3uko_A          258 DLTD--GGVDYSFECIG-----N----VSVMRAALECCHKGWGTSVI  293 (378)
T ss_dssp             HHTT--SCBSEEEECSC-----C----HHHHHHHHHTBCTTTCEEEE
T ss_pred             HhcC--CCCCEEEECCC-----C----HHHHHHHHHHhhccCCEEEE
Confidence            1122  47999975321     1    12244455899996 98873

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=93.79  E-value=0.04  Score=54.95  Aligned_cols=97  Identities=13%  Similarity=0.128  Sum_probs=59.7

Q ss_pred             hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCc
Q psy14674         72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQ  146 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~  146 (519)
                      ....+.+|.+||-+|+|. |.++..++++ |+ +|+++|.+ +-++.+++    .|..   .++..+-.++  .+....+
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~~~g  231 (340)
T 3s2e_A          160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAE---VAVNARDTDPAAWLQKEIG  231 (340)
T ss_dssp             HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHS
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCC---EEEeCCCcCHHHHHHHhCC
Confidence            345778999999999975 7777777775 77 99999998 56666654    4432   2222111111  0000013


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .+|+|+-...     .    ...+....+.|+++|.++.
T Consensus       232 ~~d~vid~~g-----~----~~~~~~~~~~l~~~G~iv~  261 (340)
T 3s2e_A          232 GAHGVLVTAV-----S----PKAFSQAIGMVRRGGTIAL  261 (340)
T ss_dssp             SEEEEEESSC-----C----HHHHHHHHHHEEEEEEEEE
T ss_pred             CCCEEEEeCC-----C----HHHHHHHHHHhccCCEEEE
Confidence            6899875432     1    1234455578999999874

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=93.69  E-value=0.051  Score=54.93  Aligned_cols=98  Identities=18%  Similarity=0.175  Sum_probs=59.9

Q ss_pred             HHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee--eEe-----
Q psy14674         70 MYHNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV--EEV-----  139 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~--~~~-----  139 (519)
                      +.....+.+|.+||-+|+|. |.++..+|++ |+.+|+++|.+ +-++.+++    .|..   .++..+-  .++     
T Consensus       183 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~  255 (373)
T 1p0f_A          183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVIC  255 (373)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHH
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEEecccccchHHHHHH
Confidence            33446778899999999864 5666666665 87789999988 56666653    4542   2222110  111     


Q ss_pred             ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcC-eEEEc
Q psy14674        140 ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATN-GLLFP  185 (519)
Q Consensus       140 ~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~Lkpg-G~lip  185 (519)
                      ....  +.+|+|+-..-     .    ...+....++|+++ |.++.
T Consensus       256 ~~t~--gg~Dvvid~~g-----~----~~~~~~~~~~l~~~~G~iv~  291 (373)
T 1p0f_A          256 EKTN--GGVDYAVECAG-----R----IETMMNALQSTYCGSGVTVV  291 (373)
T ss_dssp             HHTT--SCBSEEEECSC-----C----HHHHHHHHHTBCTTTCEEEE
T ss_pred             HHhC--CCCCEEEECCC-----C----HHHHHHHHHHHhcCCCEEEE
Confidence            1111  47999975321     1    12244455899999 98873

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.51  E-value=0.052  Score=55.41  Aligned_cols=103  Identities=21%  Similarity=0.109  Sum_probs=61.5

Q ss_pred             cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE-----e-ecCC
Q psy14674         73 NKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE-----V-ELPF  143 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~-----~-~~~~  143 (519)
                      ...+.+|.+||-+|+|. |.++..+|++ |+++|+++|.+ +-++.|++    .|.    +++.-.-.+     + .+..
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~v~~~t~  251 (398)
T 1kol_A          180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF----EIADLSLDTPLHEQIAALLG  251 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC----EEEETTSSSCHHHHHHHHHS
T ss_pred             HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC----cEEccCCcchHHHHHHHHhC
Confidence            35678899999999875 6777777775 88789999998 56676654    453    223211111     1 0111


Q ss_pred             CCceeeEEEEeccccc-------cccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        144 GIQKVDIIISEWMGYC-------LFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~-------l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                       ...+|+|+-..-...       ..++ .....+....++|++||.++.
T Consensus       252 -g~g~Dvvid~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~G~iv~  298 (398)
T 1kol_A          252 -EPEVDCAVDAVGFEARGHGHEGAKHE-APATVLNSLMQVTRVAGKIGI  298 (398)
T ss_dssp             -SSCEEEEEECCCTTCBCSSTTGGGSB-CTTHHHHHHHHHEEEEEEEEE
T ss_pred             -CCCCCEEEECCCCccccccccccccc-chHHHHHHHHHHHhcCCEEEE
Confidence             146999986432110       0011 112235555689999999873

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=93.41  E-value=0.052  Score=54.92  Aligned_cols=96  Identities=18%  Similarity=0.210  Sum_probs=58.8

Q ss_pred             hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee--eEe-----ec
Q psy14674         72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV--EEV-----EL  141 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~--~~~-----~~  141 (519)
                      ....+.+|++||-+|+|. |.++..+|++ |+.+|+++|.+ +-++.+++    .|..   .++...-  .++     ..
T Consensus       186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~  258 (374)
T 1cdo_A          186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVLSKM  258 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---eEEeccccchhHHHHHHHH
Confidence            446778899999999864 5666666665 77789999988 56666653    4432   2222110  111     11


Q ss_pred             CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcC-eEEEc
Q psy14674        142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATN-GLLFP  185 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~Lkpg-G~lip  185 (519)
                      ..  +.+|+|+...-     .    ...+....++|+++ |.++.
T Consensus       259 ~~--~g~D~vid~~g-----~----~~~~~~~~~~l~~~~G~iv~  292 (374)
T 1cdo_A          259 TN--GGVDFSLECVG-----N----VGVMRNALESCLKGWGVSVL  292 (374)
T ss_dssp             HT--SCBSEEEECSC-----C----HHHHHHHHHTBCTTTCEEEE
T ss_pred             hC--CCCCEEEECCC-----C----HHHHHHHHHHhhcCCcEEEE
Confidence            11  36999976331     1    12244555899999 98873

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=93.35  E-value=0.015  Score=58.51  Aligned_cols=96  Identities=19%  Similarity=0.196  Sum_probs=59.7

Q ss_pred             hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCC
Q psy14674         72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPF  143 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~  143 (519)
                      ....+.+|.+||-+|+|. |.++..+|++ |+.+|+++|.+ +-++.+++.    |..   .++..+-.++     ....
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~t~  232 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT---DIINYKNGDIVEQILKATD  232 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC---EEECGGGSCHHHHHHHHTT
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc---eEEcCCCcCHHHHHHHHcC
Confidence            446778999999999875 6677777776 77789999998 466766653    332   2222211111     1111


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                       ...+|+|+-..-     ...    .+....+.|+|||.++
T Consensus       233 -g~g~D~v~d~~g-----~~~----~~~~~~~~l~~~G~~v  263 (352)
T 3fpc_A          233 -GKGVDKVVIAGG-----DVH----TFAQAVKMIKPGSDIG  263 (352)
T ss_dssp             -TCCEEEEEECSS-----CTT----HHHHHHHHEEEEEEEE
T ss_pred             -CCCCCEEEECCC-----ChH----HHHHHHHHHhcCCEEE
Confidence             146999985321     111    2344457899999987

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=93.14  E-value=0.072  Score=53.78  Aligned_cols=98  Identities=20%  Similarity=0.242  Sum_probs=59.6

Q ss_pred             HHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee--eEe-----
Q psy14674         70 MYHNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV--EEV-----  139 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~--~~~-----  139 (519)
                      +.....+.+|.+||-+|+|. |.++..+|++ |+.+|+++|.+ +-++.+++    .|..   .++...-  .++     
T Consensus       182 l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~v~  254 (373)
T 2fzw_A          182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT---ECINPQDFSKPIQEVLI  254 (373)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS---EEECGGGCSSCHHHHHH
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEeccccccccHHHHHH
Confidence            33446778899999999864 5666666665 87789999988 56666654    2432   2222110  111     


Q ss_pred             ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcC-eEEEc
Q psy14674        140 ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATN-GLLFP  185 (519)
Q Consensus       140 ~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~Lkpg-G~lip  185 (519)
                      ....  +.+|+|+-..-     .    ...+....++|+++ |.++.
T Consensus       255 ~~~~--~g~D~vid~~g-----~----~~~~~~~~~~l~~~~G~iv~  290 (373)
T 2fzw_A          255 EMTD--GGVDYSFECIG-----N----VKVMRAALEACHKGWGVSVV  290 (373)
T ss_dssp             HHTT--SCBSEEEECSC-----C----HHHHHHHHHTBCTTTCEEEE
T ss_pred             HHhC--CCCCEEEECCC-----c----HHHHHHHHHhhccCCcEEEE
Confidence            1111  36999975331     1    12244555899999 98873

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=93.09  E-value=0.085  Score=52.27  Aligned_cols=67  Identities=21%  Similarity=0.198  Sum_probs=51.7

Q ss_pred             EEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         81 IVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        81 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      +|||+-||.|.+++-+.++|..-|.|+|+++ +++..+.+.     +.  +++.+|+.++.... ..++|+++..+
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~-----~~--~~~~~DI~~i~~~~-~~~~D~l~ggp   69 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----SA--KLIKGDISKISSDE-FPKCDGIIGGP   69 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC-----CS--EEEESCGGGCCGGG-SCCCSEEECCC
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----CC--CcccCChhhCCHhh-CCcccEEEecC
Confidence            7999999999999999999998889999994 666655552     22  67889998874321 24689998754

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=93.07  E-value=0.13  Score=51.30  Aligned_cols=89  Identities=24%  Similarity=0.157  Sum_probs=58.0

Q ss_pred             CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ..+.+|.+||-+|+|. |.++..+|++ |+ +|++++.+ +-++.+++    .|..   .++ .+...  +.   +.+|+
T Consensus       172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~v~-~~~~~--~~---~~~D~  237 (348)
T 3two_A          172 SKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGVK---HFY-TDPKQ--CK---EELDF  237 (348)
T ss_dssp             TTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTCS---EEE-SSGGG--CC---SCEEE
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCCC---eec-CCHHH--Hh---cCCCE
Confidence            4778999999999875 6666666665 77 99999998 56666654    4543   222 33221  22   37999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      |+-..-     ....    +....++|+|+|.++.
T Consensus       238 vid~~g-----~~~~----~~~~~~~l~~~G~iv~  263 (348)
T 3two_A          238 IISTIP-----THYD----LKDYLKLLTYNGDLAL  263 (348)
T ss_dssp             EEECCC-----SCCC----HHHHHTTEEEEEEEEE
T ss_pred             EEECCC-----cHHH----HHHHHHHHhcCCEEEE
Confidence            986332     1112    3334589999999884

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=93.04  E-value=0.068  Score=54.02  Aligned_cols=96  Identities=19%  Similarity=0.238  Sum_probs=58.3

Q ss_pred             hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee--eEe-----ec
Q psy14674         72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV--EEV-----EL  141 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~--~~~-----~~  141 (519)
                      ....+.+|.+||-+|+|. |.++..+|++ |+.+|+++|.+ +-++.+++    .|..   .++..+-  .++     ..
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~  257 (374)
T 2jhf_A          185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT---ECVNPQDYKKPIQEVLTEM  257 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---eEecccccchhHHHHHHHH
Confidence            446778899999999864 5666666664 77789999988 56666653    4432   2222110  111     11


Q ss_pred             CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcC-eEEEc
Q psy14674        142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATN-GLLFP  185 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~Lkpg-G~lip  185 (519)
                      ..  +.+|+|+-..-     .    ...+....++|+++ |.++.
T Consensus       258 ~~--~g~D~vid~~g-----~----~~~~~~~~~~l~~~~G~iv~  291 (374)
T 2jhf_A          258 SN--GGVDFSFEVIG-----R----LDTMVTALSCCQEAYGVSVI  291 (374)
T ss_dssp             TT--SCBSEEEECSC-----C----HHHHHHHHHHBCTTTCEEEE
T ss_pred             hC--CCCcEEEECCC-----C----HHHHHHHHHHhhcCCcEEEE
Confidence            11  36999975331     1    12244445789999 98873

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=92.98  E-value=0.072  Score=53.89  Aligned_cols=98  Identities=21%  Similarity=0.208  Sum_probs=59.1

Q ss_pred             HHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee--eEe-----
Q psy14674         70 MYHNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV--EEV-----  139 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~--~~~-----  139 (519)
                      +.....+.+|.+||-+|+|. |.++..+|++ |+++|+++|.+ +-++.+++    .|..   .++..+-  .++     
T Consensus       187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~v~  259 (376)
T 1e3i_A          187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVIT  259 (376)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---EEEccccccchHHHHHH
Confidence            33446778899999999863 5666666665 77789999988 56666553    4542   2221110  011     


Q ss_pred             ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcC-eEEEc
Q psy14674        140 ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATN-GLLFP  185 (519)
Q Consensus       140 ~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~Lkpg-G~lip  185 (519)
                      ....  +.+|+|+-..-     .    ...+....++|+++ |.++.
T Consensus       260 ~~~~--~g~Dvvid~~G-----~----~~~~~~~~~~l~~~~G~iv~  295 (376)
T 1e3i_A          260 ELTA--GGVDYSLDCAG-----T----AQTLKAAVDCTVLGWGSCTV  295 (376)
T ss_dssp             HHHT--SCBSEEEESSC-----C----HHHHHHHHHTBCTTTCEEEE
T ss_pred             HHhC--CCccEEEECCC-----C----HHHHHHHHHHhhcCCCEEEE
Confidence            1111  36999975321     1    12244455899999 98873

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=92.77  E-value=0.098  Score=52.57  Aligned_cols=99  Identities=24%  Similarity=0.264  Sum_probs=60.2

Q ss_pred             hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEE-----ceeeE-e-ec
Q psy14674         72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILK-----GKVEE-V-EL  141 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~-----~d~~~-~-~~  141 (519)
                      ....+.+|.+||-+|+|. |.++..+|++ |+++|+++|.+ +-++.+++. ..    ..+....     .++.+ + ..
T Consensus       173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~----~~~~~~~~~~~~~~~~~~v~~~  247 (363)
T 3m6i_A          173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP----EVVTHKVERLSAEESAKKIVES  247 (363)
T ss_dssp             HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT----TCEEEECCSCCHHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch----hcccccccccchHHHHHHHHHH
Confidence            345678899999999864 6666666665 88679999999 577777765 21    1122221     11110 1 11


Q ss_pred             CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      . ....+|+|+-..-     ..    ..+....++|++||.++.
T Consensus       248 t-~g~g~Dvvid~~g-----~~----~~~~~~~~~l~~~G~iv~  281 (363)
T 3m6i_A          248 F-GGIEPAVALECTG-----VE----SSIAAAIWAVKFGGKVFV  281 (363)
T ss_dssp             T-SSCCCSEEEECSC-----CH----HHHHHHHHHSCTTCEEEE
T ss_pred             h-CCCCCCEEEECCC-----Ch----HHHHHHHHHhcCCCEEEE
Confidence            1 1157999986332     11    123444578999999873

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=92.64  E-value=0.087  Score=52.55  Aligned_cols=94  Identities=20%  Similarity=0.237  Sum_probs=58.5

Q ss_pred             CCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee--e-Ee-ecCCCCce
Q psy14674         75 HLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV--E-EV-ELPFGIQK  147 (519)
Q Consensus        75 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~--~-~~-~~~~~~~~  147 (519)
                      .+.+|.+||-+|+|. |.++..+|++ |..+|+++|.+ +-++.+++    .|..   .++..+-  . .+ .+.. ...
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~v~~~t~-g~g  239 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD---AAVKSGAGAADAIRELTG-GQG  239 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS---EEEECSTTHHHHHHHHHG-GGC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEEcCCCcHHHHHHHHhC-CCC
Confidence            578899999999875 6677777765 66799999999 56666654    4543   2222111  0 00 0111 137


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      +|+|+-..-     .    ...+....+.|+++|.++.
T Consensus       240 ~d~v~d~~G-----~----~~~~~~~~~~l~~~G~iv~  268 (345)
T 3jv7_A          240 ATAVFDFVG-----A----QSTIDTAQQVVAVDGHISV  268 (345)
T ss_dssp             EEEEEESSC-----C----HHHHHHHHHHEEEEEEEEE
T ss_pred             CeEEEECCC-----C----HHHHHHHHHHHhcCCEEEE
Confidence            999976322     1    1234455578999999873

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=92.44  E-value=0.15  Score=46.23  Aligned_cols=95  Identities=20%  Similarity=0.193  Sum_probs=54.4

Q ss_pred             hcCCCCCCCEEEEECCc--ccHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE----e-ecC
Q psy14674         72 HNKHLFKGKIVLDIGCG--TGILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE----V-ELP  142 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcG--tG~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~----~-~~~  142 (519)
                      ....+.++++||..|++  .|.....+++ .|+ +|+++|.+ +.++.+++    .|..   .++...-.+    + ...
T Consensus        32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~~~~~~~  103 (198)
T 1pqw_A           32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE---YVGDSRSVDFADEILELT  103 (198)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS---EEEETTCSTHHHHHHHHT
T ss_pred             HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC---EEeeCCcHHHHHHHHHHh
Confidence            34567889999999964  3444444433 477 89999998 45555433    3432   122111111    0 011


Q ss_pred             CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      . .+.+|+++... +     .    ..+....+.|+|||.++.
T Consensus       104 ~-~~~~D~vi~~~-g-----~----~~~~~~~~~l~~~G~~v~  135 (198)
T 1pqw_A          104 D-GYGVDVVLNSL-A-----G----EAIQRGVQILAPGGRFIE  135 (198)
T ss_dssp             T-TCCEEEEEECC-C-----T----HHHHHHHHTEEEEEEEEE
T ss_pred             C-CCCCeEEEECC-c-----h----HHHHHHHHHhccCCEEEE
Confidence            1 14699998643 2     1    124455589999998874

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=92.44  E-value=0.075  Score=54.40  Aligned_cols=98  Identities=17%  Similarity=0.116  Sum_probs=58.1

Q ss_pred             CCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCCCCc
Q psy14674         75 HLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPFGIQ  146 (519)
Q Consensus        75 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~  146 (519)
                      .+.+|.+||-+|+|. |.++..+|++ |+.+|+++|.+ +-++.+++.    |..   .++..+-.++     .+.. ..
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~i~~~t~-g~  281 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD---HVIDPTKENFVEAVLDYTN-GL  281 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHTT-TC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEEcCCCCCHHHHHHHHhC-CC
Confidence            678899999999864 5566666664 88799999998 566776653    322   2222111111     1111 14


Q ss_pred             eeeEEEEeccccccccc-hhHHHHHHHHhcccCcCeEEEc
Q psy14674        147 KVDIIISEWMGYCLFYE-SMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e-~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .+|+|+-..-     .. .....++..+.+.++++|.++.
T Consensus       282 g~D~vid~~g-----~~~~~~~~~~~~l~~~~~~~G~iv~  316 (404)
T 3ip1_A          282 GAKLFLEATG-----VPQLVWPQIEEVIWRARGINATVAI  316 (404)
T ss_dssp             CCSEEEECSS-----CHHHHHHHHHHHHHHCSCCCCEEEE
T ss_pred             CCCEEEECCC-----CcHHHHHHHHHHHHhccCCCcEEEE
Confidence            6999985322     11 1233444444455699999884

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=92.08  E-value=0.32  Score=48.77  Aligned_cols=98  Identities=22%  Similarity=0.142  Sum_probs=59.5

Q ss_pred             HHHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----e
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----E  140 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~  140 (519)
                      ++.....+.+|.+||-+|+|. |.++..+|++ |+ +|++++.+ +-++.+++    .|..   .++..+..++     .
T Consensus       180 al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~  251 (363)
T 3uog_A          180 ALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFA----LGAD---HGINRLEEDWVERVYA  251 (363)
T ss_dssp             HHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHH----cCCC---EEEcCCcccHHHHHHH
Confidence            333456788999999999775 5666666665 77 99999998 56666654    3432   2232221111     0


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      +.. ...+|+|+...-     . ..    +....+.|+++|.++.
T Consensus       252 ~~~-g~g~D~vid~~g-----~-~~----~~~~~~~l~~~G~iv~  285 (363)
T 3uog_A          252 LTG-DRGADHILEIAG-----G-AG----LGQSLKAVAPDGRISV  285 (363)
T ss_dssp             HHT-TCCEEEEEEETT-----S-SC----HHHHHHHEEEEEEEEE
T ss_pred             HhC-CCCceEEEECCC-----h-HH----HHHHHHHhhcCCEEEE
Confidence            111 147999986432     1 12    2334478999999873

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.00  E-value=0.11  Score=51.52  Aligned_cols=49  Identities=20%  Similarity=0.209  Sum_probs=42.6

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL  125 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~  125 (519)
                      ..+|..|||--||+|..+..+.+.|. +.+|+|++ ..++.|+++++..+.
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~  299 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNI  299 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhccc
Confidence            36789999999999999999999875 99999999 589999998876554

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=91.98  E-value=0.28  Score=48.74  Aligned_cols=97  Identities=18%  Similarity=0.167  Sum_probs=58.3

Q ss_pred             HHhcCCCCCCCEEEEECCcc--cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----e
Q psy14674         70 MYHNKHLFKGKIVLDIGCGT--GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----E  140 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGt--G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~  140 (519)
                      +.....+.+|++||-+|+|+  |.++..+++. |+ +|++++.+ +-++.+++.    |..   .++...-.++     .
T Consensus       136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----ga~---~~~~~~~~~~~~~~~~  207 (340)
T 3gms_A          136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRL----GAA---YVIDTSTAPLYETVME  207 (340)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred             HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhC----CCc---EEEeCCcccHHHHHHH
Confidence            33556788999999999985  5566655554 87 99999998 566666652    322   2222111111     1


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ... ...+|+|+...-.      .   .....+ +.|+++|.++.
T Consensus       208 ~~~-~~g~Dvvid~~g~------~---~~~~~~-~~l~~~G~iv~  241 (340)
T 3gms_A          208 LTN-GIGADAAIDSIGG------P---DGNELA-FSLRPNGHFLT  241 (340)
T ss_dssp             HTT-TSCEEEEEESSCH------H---HHHHHH-HTEEEEEEEEE
T ss_pred             HhC-CCCCcEEEECCCC------h---hHHHHH-HHhcCCCEEEE
Confidence            111 1479999864321      1   112223 78999999874

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=91.95  E-value=0.14  Score=50.94  Aligned_cols=69  Identities=9%  Similarity=0.046  Sum_probs=51.1

Q ss_pred             CCEEEEECCcccHHHHHHHHcCC--CEE-EEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEee---cCCCCceeeEE
Q psy14674         79 GKIVLDIGCGTGILSMFAAKSGA--ARV-IGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVE---LPFGIQKVDII  151 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~g~--~~V-~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~~~D~I  151 (519)
                      ..+++|+.||.|.+++-+.++|.  ..| .|+|+++ +++..+.+...       .++.+|+.++.   ++.  ..+|++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-------~~~~~DI~~~~~~~i~~--~~~Dil   80 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-------EVQVKNLDSISIKQIES--LNCNTW   80 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-------CCBCCCTTTCCHHHHHH--TCCCEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-------CcccCChhhcCHHHhcc--CCCCEE
Confidence            45899999999999999999984  667 8999994 77777766532       15667877663   221  268999


Q ss_pred             EEecc
Q psy14674        152 ISEWM  156 (519)
Q Consensus       152 vs~~~  156 (519)
                      +..+.
T Consensus        81 ~ggpP   85 (327)
T 3qv2_A           81 FMSPP   85 (327)
T ss_dssp             EECCC
T ss_pred             EecCC
Confidence            97654

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=91.57  E-value=0.12  Score=50.53  Aligned_cols=72  Identities=17%  Similarity=0.086  Sum_probs=52.6

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCE--EEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEee---cCCCCceeeE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAAR--VIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVE---LPFGIQKVDI  150 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~--V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~~~D~  150 (519)
                      ..+.+|+|+-||.|.+++.+.++|...  |.++|+++ +++..+.+..     + ..++.+|+.++.   ++. .+.+|+
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----~-~~~~~~DI~~i~~~~i~~-~~~~Dl   86 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----G-KIMYVGDVRSVTQKHIQE-WGPFDL   86 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----T-CEEEECCGGGCCHHHHHH-TCCCSE
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----C-CceeCCChHHccHHHhcc-cCCcCE
Confidence            445699999999999999999999866  79999994 5555554431     2 367889988763   221 136999


Q ss_pred             EEEec
Q psy14674        151 IISEW  155 (519)
Q Consensus       151 Ivs~~  155 (519)
                      ++..+
T Consensus        87 l~ggp   91 (295)
T 2qrv_A           87 VIGGS   91 (295)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            99855

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=91.14  E-value=0.14  Score=51.16  Aligned_cols=96  Identities=25%  Similarity=0.224  Sum_probs=56.7

Q ss_pred             cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee-eEe--ecC--CC
Q psy14674         73 NKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV-EEV--ELP--FG  144 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~-~~~--~~~--~~  144 (519)
                      ...+.+|++||-+|+|. |.++..+|++ |+ +|+++|.+ +-++.+++    .|..   .++..+- .++  .+.  ..
T Consensus       163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~i~~~~~  234 (352)
T 1e3j_A          163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN----CGAD---VTLVVDPAKEEESSIIERIR  234 (352)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEECCTTTSCHHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC---EEEcCcccccHHHHHHHHhc
Confidence            34678899999999864 5666666664 77 59999998 56666653    4543   2222110 111  000  00


Q ss_pred             ---CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        145 ---IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       145 ---~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                         ...+|+|+...-     .    ...+....++|+++|.++.
T Consensus       235 ~~~g~g~D~vid~~g-----~----~~~~~~~~~~l~~~G~iv~  269 (352)
T 1e3j_A          235 SAIGDLPNVTIDCSG-----N----EKCITIGINITRTGGTLML  269 (352)
T ss_dssp             HHSSSCCSEEEECSC-----C----HHHHHHHHHHSCTTCEEEE
T ss_pred             cccCCCCCEEEECCC-----C----HHHHHHHHHHHhcCCEEEE
Confidence               146999976432     1    1123444578999999873

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=90.93  E-value=0.086  Score=52.56  Aligned_cols=68  Identities=16%  Similarity=0.187  Sum_probs=50.1

Q ss_pred             CEEEEECCcccHHHHHHHHcCC--CEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeec---CCCCceeeEEEE
Q psy14674         80 KIVLDIGCGTGILSMFAAKSGA--ARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVEL---PFGIQKVDIIIS  153 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~g~--~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~~D~Ivs  153 (519)
                      .+++|+-||.|.+++-+.++|.  ..|.++|+++ +++..+.+...      ..++.+|+.++..   +.  ..+|+++.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~~~~--~~~D~l~g   75 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQVIKK--WNVDTILM   75 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHHHHH--TTCCEEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHHhcc--CCCCEEEe
Confidence            3799999999999999988886  6788999994 66666655422      3466788877632   21  26899997


Q ss_pred             ec
Q psy14674        154 EW  155 (519)
Q Consensus       154 ~~  155 (519)
                      .+
T Consensus        76 gp   77 (333)
T 4h0n_A           76 SP   77 (333)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=90.88  E-value=0.19  Score=50.82  Aligned_cols=96  Identities=28%  Similarity=0.367  Sum_probs=57.5

Q ss_pred             cCC-CCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEce---eeE----e-e
Q psy14674         73 NKH-LFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK---VEE----V-E  140 (519)
Q Consensus        73 ~~~-~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d---~~~----~-~  140 (519)
                      ... +.+|.+||-+|+|. |.++..+|++ |+.+|++++.+ +-++.+++    .|..   .++..+   -.+    + .
T Consensus       189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~  261 (380)
T 1vj0_A          189 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMD  261 (380)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHH
T ss_pred             hcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHH
Confidence            356 78899999999663 5566666665 75699999988 56666653    4542   233222   111    1 1


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ... ...+|+|+-..-     ...    .+....++|+++|.++.
T Consensus       262 ~~~-g~g~Dvvid~~g-----~~~----~~~~~~~~l~~~G~iv~  296 (380)
T 1vj0_A          262 ITH-GRGADFILEATG-----DSR----ALLEGSELLRRGGFYSV  296 (380)
T ss_dssp             HTT-TSCEEEEEECSS-----CTT----HHHHHHHHEEEEEEEEE
T ss_pred             HhC-CCCCcEEEECCC-----CHH----HHHHHHHHHhcCCEEEE
Confidence            111 136999986432     111    23344578999999873

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=90.87  E-value=0.21  Score=48.94  Aligned_cols=90  Identities=19%  Similarity=0.090  Sum_probs=56.6

Q ss_pred             hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      ....+.+|.+||-+|+|. |.++..+|++ |+ +|++++ + +-.+.+++    .|..   .++ .|.++  +.   +.+
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~----lGa~---~v~-~d~~~--v~---~g~  200 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAK----RGVR---HLY-REPSQ--VT---QKY  200 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHH----HTEE---EEE-SSGGG--CC---SCE
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHH----cCCC---EEE-cCHHH--hC---CCc
Confidence            556788999999999953 6666666665 88 999999 8 56666655    3321   223 23222  22   689


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      |+|+-..- .    +    . +....++|+++|.++.-
T Consensus       201 Dvv~d~~g-~----~----~-~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          201 FAIFDAVN-S----Q----N-AAALVPSLKANGHIICI  228 (315)
T ss_dssp             EEEECC-----------------TTGGGEEEEEEEEEE
T ss_pred             cEEEECCC-c----h----h-HHHHHHHhcCCCEEEEE
Confidence            99975321 1    1    1 12345889999998743

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=90.80  E-value=0.28  Score=53.88  Aligned_cols=111  Identities=16%  Similarity=0.122  Sum_probs=67.5

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-----------C--CCEEEEEec---h-HHHHH-----------HHHHHHHCCC----
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-----------G--AARVIGIEC---S-NIVEY-----------AKEIVDKNNL----  125 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-----------g--~~~V~gvD~---s-~~~~~-----------A~~~~~~~~~----  125 (519)
                      +.-+|+|+|.|+|...+.+.++           .  .-+++++|.   + +-+..           +++.++....    
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            3469999999999866654332           1  137999998   4 32222           2233333211    


Q ss_pred             ------CC---cEEEEEceeeEe--ecCC-CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        126 ------SD---VVTILKGKVEEV--ELPF-GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       126 ------~~---~i~~~~~d~~~~--~~~~-~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                            .+   +++++.||+.+.  .++. ...++|+++.+.+.-....+-.-..++..+.++++|||.+....+
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~  212 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTA  212 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCC
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccC
Confidence                  11   467788888764  1210 026899999987643333333345678888899999999885444

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=90.78  E-value=0.28  Score=49.33  Aligned_cols=98  Identities=16%  Similarity=0.231  Sum_probs=59.8

Q ss_pred             HHhcCCCC-----CCCEEEEEC-Cc-ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEc--eee-
Q psy14674         70 MYHNKHLF-----KGKIVLDIG-CG-TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG--KVE-  137 (519)
Q Consensus        70 i~~~~~~~-----~~~~VLDiG-cG-tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~--d~~-  137 (519)
                      +.....+.     +|.+||-+| +| .|.++..+|++ +..+|++++.+ +-++.+++    .|..   .++..  +.. 
T Consensus       158 l~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~~~~~~  230 (363)
T 4dvj_A          158 FFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH---HVIDHSKPLAA  230 (363)
T ss_dssp             HHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS---EEECTTSCHHH
T ss_pred             HHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCCHHH
Confidence            33445555     788999999 44 47788888886 56699999998 56666654    4532   22221  111 


Q ss_pred             Ee-ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        138 EV-ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       138 ~~-~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .+ .+.  .+.+|+|+...-         -...+....++|+++|.++.
T Consensus       231 ~v~~~~--~~g~Dvvid~~g---------~~~~~~~~~~~l~~~G~iv~  268 (363)
T 4dvj_A          231 EVAALG--LGAPAFVFSTTH---------TDKHAAEIADLIAPQGRFCL  268 (363)
T ss_dssp             HHHTTC--SCCEEEEEECSC---------HHHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHhc--CCCceEEEECCC---------chhhHHHHHHHhcCCCEEEE
Confidence            11 111  257999976321         11234455578999999883

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=90.77  E-value=0.25  Score=48.87  Aligned_cols=96  Identities=18%  Similarity=0.179  Sum_probs=56.5

Q ss_pred             HHhcCCCCCCCEEEEECCc--ccHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEc-eeeEe-----
Q psy14674         70 MYHNKHLFKGKIVLDIGCG--TGILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG-KVEEV-----  139 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcG--tG~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~-d~~~~-----  139 (519)
                      +.....+.++++||..|++  .|..+..+++ .|+ +|+++|.+ +.++.+++    .|..   .++.. +..++     
T Consensus       137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~~~~~  208 (333)
T 1v3u_A          137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFD---AAFNYKTVNSLEEALK  208 (333)
T ss_dssp             HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTSCSCHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCc---EEEecCCHHHHHHHHH
Confidence            3344577889999999984  4444444444 577 99999998 56665533    3432   11211 10111     


Q ss_pred             ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        140 ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       140 ~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ....  +.+|+++...-.         . .+....+.|++||.++.
T Consensus       209 ~~~~--~~~d~vi~~~g~---------~-~~~~~~~~l~~~G~~v~  242 (333)
T 1v3u_A          209 KASP--DGYDCYFDNVGG---------E-FLNTVLSQMKDFGKIAI  242 (333)
T ss_dssp             HHCT--TCEEEEEESSCH---------H-HHHHHHTTEEEEEEEEE
T ss_pred             HHhC--CCCeEEEECCCh---------H-HHHHHHHHHhcCCEEEE
Confidence            1111  479999875421         1 24455589999998873

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=90.44  E-value=0.076  Score=53.09  Aligned_cols=96  Identities=26%  Similarity=0.205  Sum_probs=56.8

Q ss_pred             hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCC
Q psy14674         72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPF  143 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~  143 (519)
                      ....+ +|++||-+|+|. |.++..++++ |+++|++++.+ +-++.+++    .|..   .++..+-.++     .+..
T Consensus       162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~v~~~~~  233 (348)
T 2d8a_A          162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGAD---YVINPFEEDVVKEVMDITD  233 (348)
T ss_dssp             TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTCS---EEECTTTSCHHHHHHHHTT
T ss_pred             HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEECCCCcCHHHHHHHHcC
Confidence            34566 899999999953 5555556654 77689999998 56666654    2322   1222111111     1111


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                       ...+|+|+...-     .    ...+....+.|+++|.++.
T Consensus       234 -g~g~D~vid~~g-----~----~~~~~~~~~~l~~~G~iv~  265 (348)
T 2d8a_A          234 -GNGVDVFLEFSG-----A----PKALEQGLQAVTPAGRVSL  265 (348)
T ss_dssp             -TSCEEEEEECSC-----C----HHHHHHHHHHEEEEEEEEE
T ss_pred             -CCCCCEEEECCC-----C----HHHHHHHHHHHhcCCEEEE
Confidence             136999986432     1    1224445578999998873

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=90.07  E-value=0.044  Score=54.73  Aligned_cols=93  Identities=16%  Similarity=0.245  Sum_probs=55.0

Q ss_pred             cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCCC
Q psy14674         73 NKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPFG  144 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~  144 (519)
                      ...+ +|.+||-+|+|. |.++..+|++ |+++|++++.+ +-++.+++.      .+  .++..+-.++     .+.. 
T Consensus       160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l------a~--~v~~~~~~~~~~~~~~~~~-  229 (343)
T 2dq4_A          160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY------AD--RLVNPLEEDLLEVVRRVTG-  229 (343)
T ss_dssp             TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT------CS--EEECTTTSCHHHHHHHHHS-
T ss_pred             hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh------HH--hccCcCccCHHHHHHHhcC-
Confidence            4566 899999999853 5566666664 77689999998 455555442      11  1221111111     0111 


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                       ..+|+|+...-     .    ...+....+.|+++|.++.
T Consensus       230 -~g~D~vid~~g-----~----~~~~~~~~~~l~~~G~iv~  260 (343)
T 2dq4_A          230 -SGVEVLLEFSG-----N----EAAIHQGLMALIPGGEARI  260 (343)
T ss_dssp             -SCEEEEEECSC-----C----HHHHHHHHHHEEEEEEEEE
T ss_pred             -CCCCEEEECCC-----C----HHHHHHHHHHHhcCCEEEE
Confidence             46999986432     1    1223444578999998873

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=89.93  E-value=0.81  Score=49.95  Aligned_cols=110  Identities=16%  Similarity=0.125  Sum_probs=66.3

Q ss_pred             CCEEEEECCcccHHHHHHHHc-----------C--CCEEEEEec---h-HHHHH-----------HHHHHHHCCCC----
Q psy14674         79 GKIVLDIGCGTGILSMFAAKS-----------G--AARVIGIEC---S-NIVEY-----------AKEIVDKNNLS----  126 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~-----------g--~~~V~gvD~---s-~~~~~-----------A~~~~~~~~~~----  126 (519)
                      .-+|||+|-|+|...+.+.+.           .  .-+++++|.   + +.+..           +++..+.....    
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            459999999999765544322           1  126899998   5 33332           22333332210    


Q ss_pred             ---------CcEEEEEceeeEe--ecCC-CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        127 ---------DVVTILKGKVEEV--ELPF-GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       127 ---------~~i~~~~~d~~~~--~~~~-~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                               -++++..+|+.+.  .+.. ....+|+|+.+.+......+-.-..++..+.++++|||.+....+
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~  220 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS  220 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCC
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccC
Confidence                     1245666776653  1110 025799999988654433333345678889999999999885543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=89.64  E-value=0.3  Score=49.15  Aligned_cols=92  Identities=21%  Similarity=0.193  Sum_probs=56.9

Q ss_pred             CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCcee
Q psy14674         74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKV  148 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~  148 (519)
                      ..+.+|.+||-+|+|. |.++..+|++ |+ +|++++.+ +-++.+++    .|..   .++...-.+.  .+.   +.+
T Consensus       190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~---~g~  258 (369)
T 1uuf_A          190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAHL---KSF  258 (369)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTTT---TCE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHhh---cCC
Confidence            4678899999999974 6666666665 77 79999988 56676664    3332   2222111111  111   479


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      |+|+...-     ....    +....+.|+++|.++.
T Consensus       259 Dvvid~~g-----~~~~----~~~~~~~l~~~G~iv~  286 (369)
T 1uuf_A          259 DFILNTVA-----APHN----LDDFTTLLKRDGTMTL  286 (369)
T ss_dssp             EEEEECCS-----SCCC----HHHHHTTEEEEEEEEE
T ss_pred             CEEEECCC-----CHHH----HHHHHHHhccCCEEEE
Confidence            99986432     1111    2334589999998873

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=89.48  E-value=0.22  Score=49.26  Aligned_cols=98  Identities=15%  Similarity=0.172  Sum_probs=58.7

Q ss_pred             HHHhcCCCCCCCEEEEECCc--ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----
Q psy14674         69 SMYHNKHLFKGKIVLDIGCG--TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----  139 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcG--tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----  139 (519)
                      ++.....+.+|++||-.|++  .|..+..+++. |+ +|++++.+ +-++.+.   +..|..   .++...-.++     
T Consensus       140 al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~---~~~g~~---~~~~~~~~~~~~~~~  212 (336)
T 4b7c_A          140 ALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLV---EELGFD---GAIDYKNEDLAAGLK  212 (336)
T ss_dssp             HHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH---HTTCCS---EEEETTTSCHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH---HHcCCC---EEEECCCHHHHHHHH
Confidence            34355678899999999984  45555555554 77 99999988 4555542   233432   1222111111     


Q ss_pred             ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        140 ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       140 ~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ....  +.+|+|+...- .         ..+....+.|+++|.++.
T Consensus       213 ~~~~--~~~d~vi~~~g-~---------~~~~~~~~~l~~~G~iv~  246 (336)
T 4b7c_A          213 RECP--KGIDVFFDNVG-G---------EILDTVLTRIAFKARIVL  246 (336)
T ss_dssp             HHCT--TCEEEEEESSC-H---------HHHHHHHTTEEEEEEEEE
T ss_pred             HhcC--CCceEEEECCC-c---------chHHHHHHHHhhCCEEEE
Confidence            1111  47999976432 1         134555689999999883

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=89.20  E-value=0.48  Score=47.05  Aligned_cols=97  Identities=26%  Similarity=0.333  Sum_probs=59.0

Q ss_pred             HHHhcCCCCCCCEEEEECC--cccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----
Q psy14674         69 SMYHNKHLFKGKIVLDIGC--GTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----  139 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----  139 (519)
                      ++.....+.+|++||-.|+  |.|.++..++++ |+ +|++++.+ +-++.+++.    |..   .++..+ .++     
T Consensus       150 ~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga~---~v~~~~-~~~~~~v~  220 (342)
T 4eye_A          150 AYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV----GAD---IVLPLE-EGWAKAVR  220 (342)
T ss_dssp             HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS---EEEESS-TTHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc---EEecCc-hhHHHHHH
Confidence            3435567889999999998  345666666665 77 99999998 566666653    322   222222 111     


Q ss_pred             ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        140 ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       140 ~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .... ...+|+|+...-.      .    .+....+.|+++|.++.
T Consensus       221 ~~~~-~~g~Dvvid~~g~------~----~~~~~~~~l~~~G~iv~  255 (342)
T 4eye_A          221 EATG-GAGVDMVVDPIGG------P----AFDDAVRTLASEGRLLV  255 (342)
T ss_dssp             HHTT-TSCEEEEEESCC------------CHHHHHHTEEEEEEEEE
T ss_pred             HHhC-CCCceEEEECCch------h----HHHHHHHhhcCCCEEEE
Confidence            1111 1379999864321      1    13344579999999873

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=89.03  E-value=0.38  Score=47.71  Aligned_cols=97  Identities=22%  Similarity=0.231  Sum_probs=57.2

Q ss_pred             hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEc---eeeEe--ecCC
Q psy14674         72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG---KVEEV--ELPF  143 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~---d~~~~--~~~~  143 (519)
                      ......+|.+||-.|+|. |.++..++++ |+..++++|.+ +-++.|++    .|..   .++..   +..+.  .+..
T Consensus       154 ~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~---~~i~~~~~~~~~~~~~~~~  226 (346)
T 4a2c_A          154 HLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAM---QTFNSSEMSAPQMQSVLRE  226 (346)
T ss_dssp             HHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHGG
T ss_pred             HHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCe---EEEeCCCCCHHHHHHhhcc
Confidence            346778899999999975 3455555554 88889999998 45666654    4543   22222   11111  1111


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                       ...+|+|+... +    .    ...++...++|++||.++.
T Consensus       227 -~~g~d~v~d~~-G----~----~~~~~~~~~~l~~~G~~v~  258 (346)
T 4a2c_A          227 -LRFNQLILETA-G----V----PQTVELAVEIAGPHAQLAL  258 (346)
T ss_dssp             -GCSSEEEEECS-C----S----HHHHHHHHHHCCTTCEEEE
T ss_pred             -cCCcccccccc-c----c----cchhhhhhheecCCeEEEE
Confidence             14578876532 1    1    1224444578999998873

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=89.00  E-value=0.3  Score=48.61  Aligned_cols=93  Identities=19%  Similarity=0.234  Sum_probs=56.1

Q ss_pred             CCCCCCCEEEEECCc--ccHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEce-eeEe-----ecCC
Q psy14674         74 KHLFKGKIVLDIGCG--TGILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK-VEEV-----ELPF  143 (519)
Q Consensus        74 ~~~~~~~~VLDiGcG--tG~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d-~~~~-----~~~~  143 (519)
                      ..+.++++||.+|++  .|..+..+++ .|+ +|++++.+ +.++.+++    .|..   .++... -.++     ....
T Consensus       165 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~~~~~~~~~  236 (347)
T 2hcy_A          165 ANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGGE---VFIDFTKEKDIVGAVLKATD  236 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTCC---EEEETTTCSCHHHHHHHHHT
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCCc---eEEecCccHhHHHHHHHHhC
Confidence            467889999999983  4555555554 477 99999988 55565544    3432   122111 1111     0111


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                        +.+|+|+...-.         ...+....+.|+++|.++.
T Consensus       237 --~~~D~vi~~~g~---------~~~~~~~~~~l~~~G~iv~  267 (347)
T 2hcy_A          237 --GGAHGVINVSVS---------EAAIEASTRYVRANGTTVL  267 (347)
T ss_dssp             --SCEEEEEECSSC---------HHHHHHHTTSEEEEEEEEE
T ss_pred             --CCCCEEEECCCc---------HHHHHHHHHHHhcCCEEEE
Confidence              269999875421         1235556689999998873

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=88.99  E-value=0.66  Score=46.36  Aligned_cols=94  Identities=19%  Similarity=0.133  Sum_probs=56.2

Q ss_pred             CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceee-Ee--ecCCCCce
Q psy14674         74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVE-EV--ELPFGIQK  147 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~-~~--~~~~~~~~  147 (519)
                      ..+.+|.+||-+|+|. |.++..+|++ |+ +|++++.+ +-++.+++    .|..   .++..+-. ++  .+.   +.
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~~---~~  243 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKYF---DT  243 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHSC---SC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH----cCCC---EEEcCcCchHHHHHhh---cC
Confidence            5678899999999853 5666666664 77 79999988 56666665    2322   22322111 11  111   47


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      +|+|+...-..   ....    +....++|++||.++.
T Consensus       244 ~D~vid~~g~~---~~~~----~~~~~~~l~~~G~iv~  274 (360)
T 1piw_A          244 FDLIVVCASSL---TDID----FNIMPKAMKVGGRIVS  274 (360)
T ss_dssp             EEEEEECCSCS---TTCC----TTTGGGGEEEEEEEEE
T ss_pred             CCEEEECCCCC---cHHH----HHHHHHHhcCCCEEEE
Confidence            99998643210   0111    2233478999998873

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=88.72  E-value=0.21  Score=48.72  Aligned_cols=60  Identities=25%  Similarity=0.279  Sum_probs=42.4

Q ss_pred             cEEEEEceeeEe--ecCCCCceeeEEEEeccccccc--------------cc---hhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        128 VVTILKGKVEEV--ELPFGIQKVDIIISEWMGYCLF--------------YE---SMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       128 ~i~~~~~d~~~~--~~~~~~~~~D~Ivs~~~~~~l~--------------~e---~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      +++++++|+.+.  .++.  ++||+|++++......              ++   ..+..++.++.++|||||.++....
T Consensus        21 ~~~i~~gD~~~~l~~l~~--~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           21 VHRLHVGDAREVLASFPE--ASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             CEEEEESCHHHHHTTSCT--TCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCEEEECcHHHHHhhCCC--CceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            478999999874  2344  7999999998643211              11   1234567888999999999987655


Q ss_pred             c
Q psy14674        189 S  189 (519)
Q Consensus       189 ~  189 (519)
                      .
T Consensus        99 d   99 (297)
T 2zig_A           99 D   99 (297)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=88.71  E-value=0.81  Score=44.95  Aligned_cols=97  Identities=24%  Similarity=0.245  Sum_probs=57.9

Q ss_pred             HHhcCCCCCCCEEEEECC--cccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----e
Q psy14674         70 MYHNKHLFKGKIVLDIGC--GTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----E  140 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~  140 (519)
                      +.....+.+|++||-.|+  |.|..+..++++ |+ +|++++.+ +-++.+++    .|..   .++..+-.++     .
T Consensus       132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~  203 (325)
T 3jyn_A          132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKA----LGAW---ETIDYSHEDVAKRVLE  203 (325)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHH
Confidence            334457789999999994  345666666654 77 99999998 56666654    2322   2222211111     0


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .. ....+|+|+...-.      .    .+....+.|+++|.++.
T Consensus       204 ~~-~~~g~Dvvid~~g~------~----~~~~~~~~l~~~G~iv~  237 (325)
T 3jyn_A          204 LT-DGKKCPVVYDGVGQ------D----TWLTSLDSVAPRGLVVS  237 (325)
T ss_dssp             HT-TTCCEEEEEESSCG------G----GHHHHHTTEEEEEEEEE
T ss_pred             Hh-CCCCceEEEECCCh------H----HHHHHHHHhcCCCEEEE
Confidence            11 11479999864321      1    13344589999999884

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=88.43  E-value=0.077  Score=66.51  Aligned_cols=101  Identities=14%  Similarity=0.072  Sum_probs=47.0

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-C-----CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-G-----AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g-----~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      +..+||+||.|+|..+..+.+. +     ..+.+..|+| ...+.|+++++...    ++.-.-|..+. .+.....||+
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~-~~~~~~~ydl 1314 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANP-APGSLGKADL 1314 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCC-CC-----CCE
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----ccccccccccc-ccCCCCceeE
Confidence            4679999999999654433222 1     2368889999 57777777765421    22211121110 0001157999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ||+..+.|   ....+...+..++++|||||.++..
T Consensus      1315 via~~vl~---~t~~~~~~l~~~~~lL~p~G~l~~~ 1347 (2512)
T 2vz8_A         1315 LVCNCALA---TLGDPAVAVGNMAATLKEGGFLLLH 1347 (2512)
T ss_dssp             EEEECC-----------------------CCEEEEE
T ss_pred             EEEccccc---ccccHHHHHHHHHHhcCCCcEEEEE
Confidence            99876533   2334566688888999999998754

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=88.40  E-value=2.5  Score=42.62  Aligned_cols=94  Identities=19%  Similarity=0.165  Sum_probs=66.0

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCC-cEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSD-VVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .+.+||.|+.+.|.++..++..   .++.+.-| -....++.|++.|++.. .+++... .+  .++   ..+|+|+-.+
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~--~~~---~~~~~v~~~l  108 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TA--DYP---QQPGVVLIKV  108 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TS--CCC---SSCSEEEEEC
T ss_pred             CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-cc--ccc---cCCCEEEEEc
Confidence            4568999999999999988754   44556445 34566788899999875 3555432 11  233   6899998755


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      .    ..-..+...+..+...|+||+.++
T Consensus       109 p----k~~~~l~~~L~~l~~~l~~~~~i~  133 (375)
T 4dcm_A          109 P----KTLALLEQQLRALRKVVTSDTRII  133 (375)
T ss_dssp             C----SCHHHHHHHHHHHHTTCCTTSEEE
T ss_pred             C----CCHHHHHHHHHHHHhhCCCCCEEE
Confidence            3    333456667888889999999886

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=88.18  E-value=0.96  Score=44.75  Aligned_cols=100  Identities=14%  Similarity=0.042  Sum_probs=56.3

Q ss_pred             cCCCCCCCEEEEECCccc-HHHHHHH-HcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE-e-ecCCCCce
Q psy14674         73 NKHLFKGKIVLDIGCGTG-ILSMFAA-KSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE-V-ELPFGIQK  147 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGtG-~ls~~la-~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~~  147 (519)
                      .....+|.+||-+|+|.+ .++..++ .++..+|+++|.+ +-++.+++    .|....+..-..|..+ + .... ...
T Consensus       158 ~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t~-g~g  232 (348)
T 4eez_A          158 VSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKITG-GLG  232 (348)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHTT-SSC
T ss_pred             ccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhcC-CCC
Confidence            346788999999999875 3444444 4567799999999 45555543    4433212211112111 1 1111 145


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +|.++....+         ...+....+.|+++|.++.-
T Consensus       233 ~d~~~~~~~~---------~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          233 VQSAIVCAVA---------RIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             EEEEEECCSC---------HHHHHHHHHTEEEEEEEEEC
T ss_pred             ceEEEEeccC---------cchhheeheeecCCceEEEE
Confidence            7777654321         12244445799999998743

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=87.98  E-value=0.44  Score=47.07  Aligned_cols=48  Identities=19%  Similarity=0.302  Sum_probs=38.5

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH----HHHHHHHHHHHCC
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN----IVEYAKEIVDKNN  124 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~----~~~~A~~~~~~~~  124 (519)
                      ..+|..|||--||+|..+..+.+.|. +.+|+|+++    .++.|+++++..+
T Consensus       240 ~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          240 SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHcc
Confidence            36789999999999999999999875 999999995    6788888876543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=87.85  E-value=0.26  Score=48.99  Aligned_cols=94  Identities=17%  Similarity=0.169  Sum_probs=54.5

Q ss_pred             CCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceee
Q psy14674         75 HLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVD  149 (519)
Q Consensus        75 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D  149 (519)
                      .+.+|++||-+|+|. |.++..+++. |+ +|++++.+ +-++.+++    .|..   .++...-.++  .+....+.+|
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~d~~~~~~~~~~~~~~~~~d  232 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEKVGGVH  232 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHHHSSEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCC---EEecCCCccHHHHHHHHhCCCC
Confidence            577899999999963 5555555554 77 99999998 56666543    4432   1221110111  0000003699


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      +|+...-     .    ...+....++|+++|.++.
T Consensus       233 ~vid~~g-----~----~~~~~~~~~~l~~~G~~v~  259 (339)
T 1rjw_A          233 AAVVTAV-----S----KPAFQSAYNSIRRGGACVL  259 (339)
T ss_dssp             EEEESSC-----C----HHHHHHHHHHEEEEEEEEE
T ss_pred             EEEECCC-----C----HHHHHHHHHHhhcCCEEEE
Confidence            9976432     1    1224444578999998873

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=87.02  E-value=0.37  Score=48.20  Aligned_cols=91  Identities=15%  Similarity=0.242  Sum_probs=54.9

Q ss_pred             CCCCC------CEEEEECCcc-cHHH-HHHH-Hc-CCCEEEEEech-H---HHHHHHHHHHHCCCCCcEEEEEceeeE--
Q psy14674         75 HLFKG------KIVLDIGCGT-GILS-MFAA-KS-GAARVIGIECS-N---IVEYAKEIVDKNNLSDVVTILKGKVEE--  138 (519)
Q Consensus        75 ~~~~~------~~VLDiGcGt-G~ls-~~la-~~-g~~~V~gvD~s-~---~~~~A~~~~~~~~~~~~i~~~~~d~~~--  138 (519)
                      .+.+|      .+||-+|+|. |.++ ..+| ++ |+++|++++.+ +   -++.+++    .|.    +.+..+-.+  
T Consensus       163 ~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa----~~v~~~~~~~~  234 (357)
T 2b5w_A          163 YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDA----TYVDSRQTPVE  234 (357)
T ss_dssp             HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTC----EEEETTTSCGG
T ss_pred             CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCC----cccCCCccCHH
Confidence            34567      9999999853 5666 6667 54 78669999998 5   5666653    443    212111111  


Q ss_pred             -e-ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        139 -V-ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       139 -~-~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                       + .. .  +.+|+|+-..-     ..    ..+....++|+++|.++.
T Consensus       235 ~i~~~-~--gg~Dvvid~~g-----~~----~~~~~~~~~l~~~G~iv~  271 (357)
T 2b5w_A          235 DVPDV-Y--EQMDFIYEATG-----FP----KHAIQSVQALAPNGVGAL  271 (357)
T ss_dssp             GHHHH-S--CCEEEEEECSC-----CH----HHHHHHHHHEEEEEEEEE
T ss_pred             HHHHh-C--CCCCEEEECCC-----Ch----HHHHHHHHHHhcCCEEEE
Confidence             1 11 1  37999975321     11    123444578999998873

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=86.94  E-value=0.27  Score=48.95  Aligned_cols=92  Identities=21%  Similarity=0.224  Sum_probs=54.9

Q ss_pred             CCCCCCEEEEECCcc-cHHHHHHHHc---CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee-eEe--ecCCCCc
Q psy14674         75 HLFKGKIVLDIGCGT-GILSMFAAKS---GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV-EEV--ELPFGIQ  146 (519)
Q Consensus        75 ~~~~~~~VLDiGcGt-G~ls~~la~~---g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~-~~~--~~~~~~~  146 (519)
                      .+ +|.+||-+|+|. |.++..+|++   |+ +|++++.+ +-++.+++    .|..   .++..+- .+.  .+.. ..
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~-g~  237 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALE----LGAD---YVSEMKDAESLINKLTD-GL  237 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHH----HTCS---EEECHHHHHHHHHHHHT-TC
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHH----hCCC---EEeccccchHHHHHhhc-CC
Confidence            56 899999999964 5566666654   66 89999998 56666654    2322   2221110 111  1111 13


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .+|+|+...-     .    ...+....++|+++|.++.
T Consensus       238 g~D~vid~~g-----~----~~~~~~~~~~l~~~G~iv~  267 (344)
T 2h6e_A          238 GASIAIDLVG-----T----EETTYNLGKLLAQEGAIIL  267 (344)
T ss_dssp             CEEEEEESSC-----C----HHHHHHHHHHEEEEEEEEE
T ss_pred             CccEEEECCC-----C----hHHHHHHHHHhhcCCEEEE
Confidence            7999986432     1    1124445578999999873

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=86.72  E-value=0.77  Score=46.60  Aligned_cols=102  Identities=16%  Similarity=0.058  Sum_probs=61.0

Q ss_pred             cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE-----e-ecCC
Q psy14674         73 NKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE-----V-ELPF  143 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~-----~-~~~~  143 (519)
                      ...+.+|.+||.+|||. |.++..+|++ |+.+|+++|.+ +.++.+++    .|.    .++.-+-.+     + .+..
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~~~~~~~  251 (398)
T 2dph_A          180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF----ETIDLRNSAPLRDQIDQILG  251 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC----EEEETTSSSCHHHHHHHHHS
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC----cEEcCCCcchHHHHHHHHhC
Confidence            45678999999999976 7777777775 87799999998 56666543    443    233221111     1 1111


Q ss_pred             CCceeeEEEEeccccccc------cchhHHHHHHHHhcccCcCeEEE
Q psy14674        144 GIQKVDIIISEWMGYCLF------YESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~------~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                       ...+|+|+-..-.....      ++ .....+....++|++||.++
T Consensus       252 -g~g~Dvvid~~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~gG~iv  296 (398)
T 2dph_A          252 -KPEVDCGVDAVGFEAHGLGDEANTE-TPNGALNSLFDVVRAGGAIG  296 (398)
T ss_dssp             -SSCEEEEEECSCTTCBCSGGGTTSB-CTTHHHHHHHHHEEEEEEEE
T ss_pred             -CCCCCEEEECCCCcccccccccccc-ccHHHHHHHHHHHhcCCEEE
Confidence             13699998643211100      00 01123455568999999987

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=86.69  E-value=0.5  Score=46.84  Aligned_cols=97  Identities=20%  Similarity=0.124  Sum_probs=57.6

Q ss_pred             HHhcCCCCCCCEEEEECC--cccHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEc-eeeEe-----
Q psy14674         70 MYHNKHLFKGKIVLDIGC--GTGILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG-KVEEV-----  139 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGc--GtG~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~-d~~~~-----  139 (519)
                      +.....+.+|++||-.|+  |.|..+..+++ .|+ +|++++.+ +-++.+++   ..|..   .++.. +..++     
T Consensus       147 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~---~~g~~---~~~d~~~~~~~~~~~~  219 (345)
T 2j3h_A          147 FYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKT---KFGFD---DAFNYKEESDLTAALK  219 (345)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH---TSCCS---EEEETTSCSCSHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---HcCCc---eEEecCCHHHHHHHHH
Confidence            334457788999999998  35555555555 477 89999998 55665542   23432   12211 10111     


Q ss_pred             ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        140 ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       140 ~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ....  +.+|+|+...-        .  ..+....+.|++||.++.
T Consensus       220 ~~~~--~~~d~vi~~~g--------~--~~~~~~~~~l~~~G~~v~  253 (345)
T 2j3h_A          220 RCFP--NGIDIYFENVG--------G--KMLDAVLVNMNMHGRIAV  253 (345)
T ss_dssp             HHCT--TCEEEEEESSC--------H--HHHHHHHTTEEEEEEEEE
T ss_pred             HHhC--CCCcEEEECCC--------H--HHHHHHHHHHhcCCEEEE
Confidence            0111  46999986432        1  134555689999999873

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=86.46  E-value=0.52  Score=46.83  Aligned_cols=96  Identities=22%  Similarity=0.314  Sum_probs=56.3

Q ss_pred             HHhcCCCC------CCCEEEEEC-Cc-ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEce--ee
Q psy14674         70 MYHNKHLF------KGKIVLDIG-CG-TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK--VE  137 (519)
Q Consensus        70 i~~~~~~~------~~~~VLDiG-cG-tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d--~~  137 (519)
                      +.....+.      +|.+||-+| +| .|.++..++++ |+ +|++++.+ +-++.+++    .|..   .++..+  ..
T Consensus       136 l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~  207 (346)
T 3fbg_A          136 LFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKK----MGAD---IVLNHKESLL  207 (346)
T ss_dssp             HHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHH----HTCS---EEECTTSCHH
T ss_pred             HHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCc---EEEECCccHH
Confidence            43445566      899999995 43 35566666655 77 99999998 56666665    2322   122111  10


Q ss_pred             -Ee-ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        138 -EV-ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       138 -~~-~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                       .+ ...  .+.+|+|+...-         -...+....++|+++|.++
T Consensus       208 ~~~~~~~--~~g~Dvv~d~~g---------~~~~~~~~~~~l~~~G~iv  245 (346)
T 3fbg_A          208 NQFKTQG--IELVDYVFCTFN---------TDMYYDDMIQLVKPRGHIA  245 (346)
T ss_dssp             HHHHHHT--CCCEEEEEESSC---------HHHHHHHHHHHEEEEEEEE
T ss_pred             HHHHHhC--CCCccEEEECCC---------chHHHHHHHHHhccCCEEE
Confidence             01 111  147999976321         1223444557899999986

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=86.16  E-value=1.5  Score=42.98  Aligned_cols=94  Identities=20%  Similarity=0.189  Sum_probs=56.5

Q ss_pred             hcCCCCCCCEEEEEC-Cc-ccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeE-eecCCCCce
Q psy14674         72 HNKHLFKGKIVLDIG-CG-TGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEE-VELPFGIQK  147 (519)
Q Consensus        72 ~~~~~~~~~~VLDiG-cG-tG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~~  147 (519)
                      ....+.+|.+||-+| +| .|.++..+|++ |+ +|++++.++-.+.+++    .|..   .++..+-.+ +....  ..
T Consensus       146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~--~g  215 (321)
T 3tqh_A          146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTASKRNHAFLKA----LGAE---QCINYHEEDFLLAIS--TP  215 (321)
T ss_dssp             HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEECHHHHHHHHH----HTCS---EEEETTTSCHHHHCC--SC
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeccchHHHHHH----cCCC---EEEeCCCcchhhhhc--cC
Confidence            456788999999997 44 46777777765 77 8999985544555543    4543   223222111 11111  46


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      +|+|+-..-     .    ..+ ....++|+++|.++.
T Consensus       216 ~D~v~d~~g-----~----~~~-~~~~~~l~~~G~iv~  243 (321)
T 3tqh_A          216 VDAVIDLVG-----G----DVG-IQSIDCLKETGCIVS  243 (321)
T ss_dssp             EEEEEESSC-----H----HHH-HHHGGGEEEEEEEEE
T ss_pred             CCEEEECCC-----c----HHH-HHHHHhccCCCEEEE
Confidence            999976321     1    122 445689999999873

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=85.88  E-value=0.43  Score=47.67  Aligned_cols=96  Identities=17%  Similarity=0.143  Sum_probs=55.8

Q ss_pred             hcCCCCCC--CEEEEECCcc--cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----e
Q psy14674         72 HNKHLFKG--KIVLDIGCGT--GILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----E  140 (519)
Q Consensus        72 ~~~~~~~~--~~VLDiGcGt--G~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~  140 (519)
                      ....+.++  ++||-.|++.  |..+..+++ .|+++|++++.+ +-++.+++.   .|..   .++..+-.++     .
T Consensus       152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~---~~~d~~~~~~~~~~~~  225 (357)
T 2zb4_A          152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD---AAINYKKDNVAEQLRE  225 (357)
T ss_dssp             HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS---EEEETTTSCHHHHHHH
T ss_pred             HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc---eEEecCchHHHHHHHH
Confidence            44567888  9999999843  444444444 477699999998 455554431   3432   1222111111     1


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ...  +.+|+++...-     .     ..+....++|+++|.++.
T Consensus       226 ~~~--~~~d~vi~~~G-----~-----~~~~~~~~~l~~~G~iv~  258 (357)
T 2zb4_A          226 SCP--AGVDVYFDNVG-----G-----NISDTVISQMNENSHIIL  258 (357)
T ss_dssp             HCT--TCEEEEEESCC-----H-----HHHHHHHHTEEEEEEEEE
T ss_pred             hcC--CCCCEEEECCC-----H-----HHHHHHHHHhccCcEEEE
Confidence            111  36999986432     1     224445579999999873

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=85.83  E-value=0.42  Score=47.26  Aligned_cols=61  Identities=13%  Similarity=0.115  Sum_probs=43.7

Q ss_pred             CcEEEEEceeeEe--ecCCCCceeeEEEEeccccccc-----------cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        127 DVVTILKGKVEEV--ELPFGIQKVDIIISEWMGYCLF-----------YESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       127 ~~i~~~~~d~~~~--~~~~~~~~~D~Ivs~~~~~~l~-----------~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++..++++|+.+.  .++.  +++|+|++++......           +...+..++.++.++|+|||.++.....
T Consensus        13 ~~~~ii~gD~~~~l~~l~~--~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d   86 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPE--ESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG   86 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCS--SCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCceEEeCcHHHHHhhCCC--CCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence            3578999998763  2444  7899999988643221           1124667788889999999999876554

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=85.54  E-value=0.64  Score=46.58  Aligned_cols=93  Identities=27%  Similarity=0.215  Sum_probs=56.9

Q ss_pred             cCCCCCCCEEEEECC--cccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCC
Q psy14674         73 NKHLFKGKIVLDIGC--GTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPF  143 (519)
Q Consensus        73 ~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~  143 (519)
                      ...+.+|++||-+|+  |.|..+..+++. |+ +|++++.+ +-++.+++    .|..   .++..+-.++     ....
T Consensus       158 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~~  229 (362)
T 2c0c_A          158 LGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQEYP  229 (362)
T ss_dssp             HTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHCT
T ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHhcC
Confidence            356788999999993  456666666664 77 89999998 56666654    3432   2222111111     0111


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                        +.+|+|+...-     .     ..+....+.|+++|.++.
T Consensus       230 --~g~D~vid~~g-----~-----~~~~~~~~~l~~~G~iv~  259 (362)
T 2c0c_A          230 --EGVDVVYESVG-----G-----AMFDLAVDALATKGRLIV  259 (362)
T ss_dssp             --TCEEEEEECSC-----T-----HHHHHHHHHEEEEEEEEE
T ss_pred             --CCCCEEEECCC-----H-----HHHHHHHHHHhcCCEEEE
Confidence              46999986432     1     124445578999998873

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=85.51  E-value=3  Score=40.15  Aligned_cols=105  Identities=23%  Similarity=0.256  Sum_probs=65.3

Q ss_pred             CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-H-HHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CC
Q psy14674         77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-N-IVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PF  143 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~  143 (519)
                      .+++++|-.|++.|+   ++..+++.|+ +|+.++.+ + ..+.+.+..+..+  .++.++.+|+.+..-        ..
T Consensus        45 l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  121 (291)
T 3ijr_A           45 LKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVR  121 (291)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            468899999998874   5566777787 89999987 4 4555555555544  458899999876310        00


Q ss_pred             CCceeeEEEEeccccc----cc--cchhHH-----------HHHHHHhcccCcCeEEE
Q psy14674        144 GIQKVDIIISEWMGYC----LF--YESMLD-----------TVLYARDKWLATNGLLF  184 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~----l~--~e~~l~-----------~~l~~~~r~LkpgG~li  184 (519)
                      ..++.|++|.+.-...    +.  ..+.++           .+.+++.+.++++|.++
T Consensus       122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv  179 (291)
T 3ijr_A          122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVII  179 (291)
T ss_dssp             HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEE
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEE
Confidence            0147899998643111    10  111111           34455667778888766

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=85.51  E-value=1.5  Score=42.09  Aligned_cols=73  Identities=15%  Similarity=0.195  Sum_probs=51.1

Q ss_pred             CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CCC
Q psy14674         77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PFG  144 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~  144 (519)
                      .+|+++|--|+++|+   .+..+++.|+ +|+.+|.+ +.++.+.+.+   +  .++..+.+|+.+..-        ...
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~~  100 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKAE  100 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHHH
Confidence            679999999999985   5667788888 99999999 5554443332   2  346778888766410        111


Q ss_pred             CceeeEEEEec
Q psy14674        145 IQKVDIIISEW  155 (519)
Q Consensus       145 ~~~~D~Ivs~~  155 (519)
                      .++.|++|.+.
T Consensus       101 ~G~iDiLVNNA  111 (273)
T 4fgs_A          101 AGRIDVLFVNA  111 (273)
T ss_dssp             HSCEEEEEECC
T ss_pred             cCCCCEEEECC
Confidence            15799999865

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=84.81  E-value=0.47  Score=47.14  Aligned_cols=94  Identities=24%  Similarity=0.333  Sum_probs=55.6

Q ss_pred             CCCCCCCEEEEECCccc--HHHHHHH-Hc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCC
Q psy14674         74 KHLFKGKIVLDIGCGTG--ILSMFAA-KS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPF  143 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG--~ls~~la-~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~  143 (519)
                      ..+.++++||-.|+|+|  ..+..++ .. |+ +|+++|.+ +.++.+++.    |..   .++...-.+.     .+..
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~  237 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRITE  237 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTT
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh----CCC---EEecCCCccHHHHHHHHhc
Confidence            56788999999999855  3444444 45 77 89999998 566666542    322   1222111111     1111


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      . +.+|+|+...-.         ...+....+.|+++|.++.
T Consensus       238 ~-~~~d~vi~~~g~---------~~~~~~~~~~l~~~G~iv~  269 (347)
T 1jvb_A          238 S-KGVDAVIDLNNS---------EKTLSVYPKALAKQGKYVM  269 (347)
T ss_dssp             T-SCEEEEEESCCC---------HHHHTTGGGGEEEEEEEEE
T ss_pred             C-CCceEEEECCCC---------HHHHHHHHHHHhcCCEEEE
Confidence            0 379999864321         1234455689999998873

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=84.63  E-value=3  Score=39.17  Aligned_cols=73  Identities=16%  Similarity=0.234  Sum_probs=49.9

Q ss_pred             CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CCC
Q psy14674         77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PFG  144 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~  144 (519)
                      .+++++|-.|++.|+   ++..+++.|+ +|+.++.+ +.++...+..     ..++.++.+|+.+..-        ...
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAGQT   79 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHH
Confidence            468899999998874   5566777787 89999998 4444443333     2358899999876421        000


Q ss_pred             CceeeEEEEec
Q psy14674        145 IQKVDIIISEW  155 (519)
Q Consensus       145 ~~~~D~Ivs~~  155 (519)
                      .++.|++|.+.
T Consensus        80 ~g~id~lv~nA   90 (255)
T 4eso_A           80 LGAIDLLHINA   90 (255)
T ss_dssp             HSSEEEEEECC
T ss_pred             hCCCCEEEECC
Confidence            14799999864

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=84.61  E-value=3.5  Score=38.74  Aligned_cols=77  Identities=16%  Similarity=0.159  Sum_probs=51.9

Q ss_pred             CCCCEEEEECCc--ccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------C
Q psy14674         77 FKGKIVLDIGCG--TGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------P  142 (519)
Q Consensus        77 ~~~~~VLDiGcG--tG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~  142 (519)
                      ..++++|-.|++  +|+   ++..+++.|+ +|+.++.+ ...+.+.+..+..+- .++.++.+|+.+..-        .
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~   82 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIK   82 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHH
Confidence            467899999987  554   5667777787 89999887 455555555555442 258899999876420        0


Q ss_pred             CCCceeeEEEEec
Q psy14674        143 FGIQKVDIIISEW  155 (519)
Q Consensus       143 ~~~~~~D~Ivs~~  155 (519)
                      ...+++|++|.+.
T Consensus        83 ~~~g~id~li~~A   95 (266)
T 3oig_A           83 EQVGVIHGIAHCI   95 (266)
T ss_dssp             HHHSCCCEEEECC
T ss_pred             HHhCCeeEEEEcc
Confidence            0013689998865

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=84.34  E-value=0.8  Score=47.87  Aligned_cols=74  Identities=15%  Similarity=0.171  Sum_probs=51.8

Q ss_pred             CCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCC--------------
Q psy14674         79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPF--------------  143 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~--------------  143 (519)
                      .-+++|+-||.|.+++-+.++|...|.++|+++ +++..+.+....  + ...++.+|+.++....              
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~--p-~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~  164 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD--P-ATHHFNEDIRDITLSHQEGVSDEAAAEHIR  164 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC--T-TTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC--C-CcceeccchhhhhhccccccchhhHHhhhh
Confidence            358999999999999999999987899999995 555555543110  1 1356778887764210              


Q ss_pred             -CCceeeEEEEec
Q psy14674        144 -GIQKVDIIISEW  155 (519)
Q Consensus       144 -~~~~~D~Ivs~~  155 (519)
                       ....+|+|+..+
T Consensus       165 ~~~~~~Dvl~gGp  177 (482)
T 3me5_A          165 QHIPEHDVLLAGF  177 (482)
T ss_dssp             HHSCCCSEEEEEC
T ss_pred             hcCCCCCEEEecC
Confidence             113689998755

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=84.07  E-value=1  Score=44.23  Aligned_cols=97  Identities=16%  Similarity=0.171  Sum_probs=55.8

Q ss_pred             HHhcCCCCCCCEEEEECCc--ccHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----e
Q psy14674         70 MYHNKHLFKGKIVLDIGCG--TGILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----E  140 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcG--tG~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~  140 (519)
                      +.....+.++++||-.|++  .|.....+++ .|+ +|++++.+ +.++.+++.    |..   .++..+-.+.     .
T Consensus       132 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~  203 (327)
T 1qor_A          132 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAW---QVINYREEDLVERLKE  203 (327)
T ss_dssp             HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCC---EEEECCCccHHHHHHH
Confidence            3334567889999999953  4444444444 477 99999998 566666542    322   1222111111     0


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ... ...+|+++...-      ...    +....++|+++|.++.
T Consensus       204 ~~~-~~~~D~vi~~~g------~~~----~~~~~~~l~~~G~iv~  237 (327)
T 1qor_A          204 ITG-GKKVRVVYDSVG------RDT----WERSLDCLQRRGLMVS  237 (327)
T ss_dssp             HTT-TCCEEEEEECSC------GGG----HHHHHHTEEEEEEEEE
T ss_pred             HhC-CCCceEEEECCc------hHH----HHHHHHHhcCCCEEEE
Confidence            111 146999986532      112    3444578999998873

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=83.91  E-value=3  Score=35.21  Aligned_cols=91  Identities=18%  Similarity=0.151  Sum_probs=53.0

Q ss_pred             CCEEEEECCcc-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec-C-CCCceeeEEEE
Q psy14674         79 GKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL-P-FGIQKVDIIIS  153 (519)
Q Consensus        79 ~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~-~-~~~~~~D~Ivs  153 (519)
                      ..+|+=+|||. | .++..+.+.|. .|+++|.+ +.++.+++    .|    +.++.+|..+... . .....+|+|++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLAHLECAKWLIL   77 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhcCcccCCEEEE
Confidence            35788899975 3 34445555676 89999999 56655543    33    5788888765321 1 11257899987


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ..-     . ......+-...+.+.|+..++
T Consensus        78 ~~~-----~-~~~n~~~~~~a~~~~~~~~ii  102 (140)
T 3fwz_A           78 TIP-----N-GYEAGEIVASARAKNPDIEII  102 (140)
T ss_dssp             CCS-----C-HHHHHHHHHHHHHHCSSSEEE
T ss_pred             ECC-----C-hHHHHHHHHHHHHHCCCCeEE
Confidence            432     1 111111222345667777665

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=83.25  E-value=6  Score=39.09  Aligned_cols=124  Identities=10%  Similarity=0.041  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHhcCCC-CCCCEEEEECCcccHHHHHHHHcC--CCEEEEEechHHHHHHHHHHHHCC------------
Q psy14674         60 EVRTMTYRNSMYHNKHL-FKGKIVLDIGCGTGILSMFAAKSG--AARVIGIECSNIVEYAKEIVDKNN------------  124 (519)
Q Consensus        60 ~~r~~~y~~ai~~~~~~-~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~~~~~A~~~~~~~~------------  124 (519)
                      ..|+..+.+.+...... .+...|+-+|||.=.....+...+  ..+++=||..++++.=++.+...+            
T Consensus        71 ~~Rt~~iD~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~  150 (334)
T 3iei_A           71 FARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSE  150 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccc
Confidence            35666655555332221 245799999999887777776542  346777777765554444444311            


Q ss_pred             ----------CCCcEEEEEceeeEee-c-------CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        125 ----------LSDVVTILKGKVEEVE-L-------PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       125 ----------~~~~i~~~~~d~~~~~-~-------~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                                ..++..++.+|+.+.. +       .......=++++|.+..++..+ ....+++.+.....+|..++
T Consensus       151 ~~~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~-~~~~ll~~ia~~f~~~~~i~  227 (334)
T 3iei_A          151 DTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPE-QSANLLKWAANSFERAMFIN  227 (334)
T ss_dssp             SSCBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH-HHHHHHHHHHHHCSSEEEEE
T ss_pred             cccccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHH-HHHHHHHHHHHhCCCceEEE
Confidence                      1456889999987631 1       0111456789999987776544 46677777766554444333

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=82.76  E-value=1.4  Score=43.78  Aligned_cols=103  Identities=11%  Similarity=0.101  Sum_probs=53.7

Q ss_pred             HHhcCCCCCCCEEEEECC--cccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEce---eeEe-ecC
Q psy14674         70 MYHNKHLFKGKIVLDIGC--GTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGK---VEEV-ELP  142 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d---~~~~-~~~  142 (519)
                      +.....+.+|.+||-+|+  |.|.++..+|+. |++.|..++.++-.+..++.++..|..   .++..+   ..++ ...
T Consensus       159 l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~~~  235 (357)
T 1zsy_A          159 LMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAE---HVITEEELRRPEMKNFF  235 (357)
T ss_dssp             HHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCS---EEEEHHHHHSGGGGGTT
T ss_pred             HHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCc---EEEecCcchHHHHHHHH
Confidence            334457789999999997  456777777775 774455555542111111223345543   223211   1111 111


Q ss_pred             CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ...+.+|+|+-..-     ..    ... ...++|+++|.++.
T Consensus       236 ~~~~~~Dvvid~~g-----~~----~~~-~~~~~l~~~G~iv~  268 (357)
T 1zsy_A          236 KDMPQPRLALNCVG-----GK----SST-ELLRQLARGGTMVT  268 (357)
T ss_dssp             SSSCCCSEEEESSC-----HH----HHH-HHHTTSCTTCEEEE
T ss_pred             hCCCCceEEEECCC-----cH----HHH-HHHHhhCCCCEEEE
Confidence            11124899875321     11    112 23589999999874

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=82.46  E-value=0.62  Score=46.47  Aligned_cols=96  Identities=24%  Similarity=0.214  Sum_probs=57.0

Q ss_pred             HHhcCCCCCCCEEEEECC--cccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----e
Q psy14674         70 MYHNKHLFKGKIVLDIGC--GTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----E  140 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~  140 (519)
                      +.....+.+|++||-.|+  |.|..+..+++. |+ +|++++.+ +-++.+++    .|..   .++..+-.++     .
T Consensus       159 l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~~~  230 (353)
T 4dup_A          159 LFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACER----LGAK---RGINYRSEDFAAVIKA  230 (353)
T ss_dssp             HTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCC---EEEeCCchHHHHHHHH
Confidence            334567889999999964  345566655554 77 89999998 56666655    2322   2222111111     0


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ...  +.+|+|+...-.      ..    +....+.|+++|.++.
T Consensus       231 ~~~--~g~Dvvid~~g~------~~----~~~~~~~l~~~G~iv~  263 (353)
T 4dup_A          231 ETG--QGVDIILDMIGA------AY----FERNIASLAKDGCLSI  263 (353)
T ss_dssp             HHS--SCEEEEEESCCG------GG----HHHHHHTEEEEEEEEE
T ss_pred             HhC--CCceEEEECCCH------HH----HHHHHHHhccCCEEEE
Confidence            111  579999864321      11    3344578999998873

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=82.28  E-value=3.6  Score=38.66  Aligned_cols=78  Identities=14%  Similarity=0.138  Sum_probs=52.0

Q ss_pred             CCCCCCCEEEEECCc--ccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-------
Q psy14674         74 KHLFKGKIVLDIGCG--TGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-------  140 (519)
Q Consensus        74 ~~~~~~~~VLDiGcG--tG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-------  140 (519)
                      ....++++||-.|++  .|+   ++..+++.|+ +|+.++.+ ...+.+++..+..+   ++.++.+|+.+..       
T Consensus         9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~   84 (271)
T 3ek2_A            9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFA   84 (271)
T ss_dssp             CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHH
T ss_pred             ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHH
Confidence            445678999999986  553   4556677787 89999887 45555555555543   3678888887641       


Q ss_pred             -cCCCCceeeEEEEec
Q psy14674        141 -LPFGIQKVDIIISEW  155 (519)
Q Consensus       141 -~~~~~~~~D~Ivs~~  155 (519)
                       .....++.|++|.+.
T Consensus        85 ~~~~~~g~id~lv~nA  100 (271)
T 3ek2_A           85 SLKTHWDSLDGLVHSI  100 (271)
T ss_dssp             HHHHHCSCEEEEEECC
T ss_pred             HHHHHcCCCCEEEECC
Confidence             000114789999865

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=82.01  E-value=2.1  Score=42.01  Aligned_cols=95  Identities=19%  Similarity=0.239  Sum_probs=56.5

Q ss_pred             hcCCCCCCCEEEEECCc--ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecC
Q psy14674         72 HNKHLFKGKIVLDIGCG--TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELP  142 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcG--tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~  142 (519)
                      ....+.+|++||-+|++  .|..+..++++ |+ +|++++.+ +-++.+++    .|..   .++..+-.++     ...
T Consensus       142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~  213 (334)
T 3qwb_A          142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YGAE---YLINASKEDILRQVLKFT  213 (334)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHT
T ss_pred             HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc---EEEeCCCchHHHHHHHHh
Confidence            34577899999999953  45555555554 77 99999998 55666554    3432   2222211111     011


Q ss_pred             CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                       ....+|+|+...-.      ..    +....+.|++||.++.
T Consensus       214 -~~~g~D~vid~~g~------~~----~~~~~~~l~~~G~iv~  245 (334)
T 3qwb_A          214 -NGKGVDASFDSVGK------DT----FEISLAALKRKGVFVS  245 (334)
T ss_dssp             -TTSCEEEEEECCGG------GG----HHHHHHHEEEEEEEEE
T ss_pred             -CCCCceEEEECCCh------HH----HHHHHHHhccCCEEEE
Confidence             11479999864321      12    3344478999999874

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=81.78  E-value=1.4  Score=43.91  Aligned_cols=98  Identities=18%  Similarity=0.249  Sum_probs=55.8

Q ss_pred             HHhcCCCCCCCEEEEECCc--ccHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ec--
Q psy14674         70 MYHNKHLFKGKIVLDIGCG--TGILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--EL--  141 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcG--tG~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~--  141 (519)
                      +.....+.++++||-.|++  .|..+..+++ .|+ +|++++.+ +-++.+++    .|..   .++..+-.++  .+  
T Consensus       162 l~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~d~~~~~~~~~~~~  233 (351)
T 1yb5_A          162 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAH---EVFNHREVNYIDKIKK  233 (351)
T ss_dssp             HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTSTTHHHHHHH
T ss_pred             HHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHH----cCCC---EEEeCCCchHHHHHHH
Confidence            3334577889999999973  4455554444 477 89999998 45555443    3432   1222111110  00  


Q ss_pred             CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ......+|+|+...- .        . .+....++|+++|.++.
T Consensus       234 ~~~~~~~D~vi~~~G-~--------~-~~~~~~~~l~~~G~iv~  267 (351)
T 1yb5_A          234 YVGEKGIDIIIEMLA-N--------V-NLSKDLSLLSHGGRVIV  267 (351)
T ss_dssp             HHCTTCEEEEEESCH-H--------H-HHHHHHHHEEEEEEEEE
T ss_pred             HcCCCCcEEEEECCC-h--------H-HHHHHHHhccCCCEEEE
Confidence            000137999986432 1        1 23344578999998873

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=81.33  E-value=5.2  Score=37.92  Aligned_cols=105  Identities=18%  Similarity=0.161  Sum_probs=63.2

Q ss_pred             CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-------------HHHHHHHHHHHHCCCCCcEEEEEceeeEee
Q psy14674         77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-------------NIVEYAKEIVDKNNLSDVVTILKGKVEEVE  140 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-------------~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~  140 (519)
                      ..+++||-.|++.|+   ++..+++.|+ +|+.+|.+             +-++.+.+.+...+  .++.++.+|+.+..
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   84 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRA   84 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHH
Confidence            468899999998874   5566777787 89999864             23444444444443  45899999987642


Q ss_pred             c--------CCCCceeeEEEEecccccc---ccchhHH-----------HHHHHHhcccCcCeEEE
Q psy14674        141 L--------PFGIQKVDIIISEWMGYCL---FYESMLD-----------TVLYARDKWLATNGLLF  184 (519)
Q Consensus       141 ~--------~~~~~~~D~Ivs~~~~~~l---~~e~~l~-----------~~l~~~~r~LkpgG~li  184 (519)
                      -        ....++.|++|.+.-....   ...+.++           .+.+++.+.++++|.++
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv  150 (287)
T 3pxx_A           85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASII  150 (287)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEE
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEE
Confidence            1        0001378999986532111   1111122           23455556677778766

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=81.10  E-value=5.6  Score=38.23  Aligned_cols=76  Identities=16%  Similarity=0.179  Sum_probs=50.9

Q ss_pred             CCCCCEEEEECCc--ccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------
Q psy14674         76 LFKGKIVLDIGCG--TGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------  141 (519)
Q Consensus        76 ~~~~~~VLDiGcG--tG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------  141 (519)
                      ...++++|-.|++  .|+   ++..+++.|+ +|+.++.+ ...+.+++..+..+   ++.++.+|+.+..-        
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~  103 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETL  103 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHH
Confidence            3568899999987  443   5667777787 89999988 45555555544433   47888898876410        


Q ss_pred             CCCCceeeEEEEec
Q psy14674        142 PFGIQKVDIIISEW  155 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~  155 (519)
                      ....++.|++|.+.
T Consensus       104 ~~~~g~iD~lVnnA  117 (293)
T 3grk_A          104 EKKWGKLDFLVHAI  117 (293)
T ss_dssp             HHHTSCCSEEEECC
T ss_pred             HHhcCCCCEEEECC
Confidence            00114789999865

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=81.05  E-value=1.4  Score=42.78  Aligned_cols=88  Identities=16%  Similarity=0.140  Sum_probs=53.7

Q ss_pred             CCCCCEEEEECC--cccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee-eEeecCCCCceeeE
Q psy14674         76 LFKGKIVLDIGC--GTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV-EEVELPFGIQKVDI  150 (519)
Q Consensus        76 ~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~~~D~  150 (519)
                      +.+|++||-+|+  |.|..+..+++. |+ +|++++.+ +-++.+++    .|..   .++..+- .++.-..  +.+|+
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~--~~~d~  192 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAW--GGLDL  192 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHT--TSEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHh--cCceE
Confidence            788999999998  345666666654 77 99999998 55555543    3432   2222111 1110001  46999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      |+.  .+.     ..    +....+.|+++|.++
T Consensus       193 vid--~g~-----~~----~~~~~~~l~~~G~~v  215 (302)
T 1iz0_A          193 VLE--VRG-----KE----VEESLGLLAHGGRLV  215 (302)
T ss_dssp             EEE--CSC-----TT----HHHHHTTEEEEEEEE
T ss_pred             EEE--CCH-----HH----HHHHHHhhccCCEEE
Confidence            987  322     11    344458999999887

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=80.55  E-value=3.6  Score=38.69  Aligned_cols=76  Identities=14%  Similarity=0.167  Sum_probs=50.7

Q ss_pred             CCCCEEEEECCcccH---HHHHHHHcCCCEEEEE-ech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CC
Q psy14674         77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGI-ECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PF  143 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gv-D~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~  143 (519)
                      ..++++|-.|++.|+   ++..+++.|+ +|+.+ +.+ +..+.+.+.++..+  .++.++.+|+.+..-        ..
T Consensus         6 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (259)
T 3edm_A            6 FTNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAAD   82 (259)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            468899999998884   5666777788 78877 555 45555555555443  357889998876410        00


Q ss_pred             CCceeeEEEEec
Q psy14674        144 GIQKVDIIISEW  155 (519)
Q Consensus       144 ~~~~~D~Ivs~~  155 (519)
                      ..++.|++|.+.
T Consensus        83 ~~g~id~lv~nA   94 (259)
T 3edm_A           83 KFGEIHGLVHVA   94 (259)
T ss_dssp             HHCSEEEEEECC
T ss_pred             HhCCCCEEEECC
Confidence            013799999865

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=80.43  E-value=4.3  Score=38.48  Aligned_cols=76  Identities=18%  Similarity=0.221  Sum_probs=55.8

Q ss_pred             CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CCC
Q psy14674         77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PFG  144 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~  144 (519)
                      .+|+++|--|+++|+   .+..+++.|+ +|+.+|.+ +-++.+.+.++..|  .++.++.+|+.+..-        ...
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFET   81 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            468999999999985   5667778888 89999999 66666666666655  358889999876410        001


Q ss_pred             CceeeEEEEec
Q psy14674        145 IQKVDIIISEW  155 (519)
Q Consensus       145 ~~~~D~Ivs~~  155 (519)
                      .++.|++|.+.
T Consensus        82 ~G~iDiLVNNA   92 (254)
T 4fn4_A           82 YSRIDVLCNNA   92 (254)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            15799999865

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=80.37  E-value=4.1  Score=38.13  Aligned_cols=75  Identities=9%  Similarity=0.062  Sum_probs=48.0

Q ss_pred             CCCEEEEECCcccH---HHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec-C-------CC
Q psy14674         78 KGKIVLDIGCGTGI---LSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL-P-------FG  144 (519)
Q Consensus        78 ~~~~VLDiGcGtG~---ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~-~-------~~  144 (519)
                      ++++||-.|++.|+   ++..+++ .|+ +|++++.+ +-++.+.+.+...+  .++.++.+|+.+..- .       ..
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            56789988876653   4445666 677 89999988 55555555555443  347888998876410 0       00


Q ss_pred             CceeeEEEEec
Q psy14674        145 IQKVDIIISEW  155 (519)
Q Consensus       145 ~~~~D~Ivs~~  155 (519)
                      .+++|+||.+.
T Consensus        80 ~g~id~li~~A   90 (276)
T 1wma_A           80 YGGLDVLVNNA   90 (276)
T ss_dssp             HSSEEEEEECC
T ss_pred             cCCCCEEEECC
Confidence            03799999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	519
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	1e-115
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	2e-37
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	1e-102
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	5e-27
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-97
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	3e-24
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	3e-11
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	7e-09
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	3e-08
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	4e-08
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	6e-07
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	2e-06
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	5e-06
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	8e-06
d2esra1	152	c.66.1.46 (A:28-179) Putative methyltransferase SP	1e-05
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	1e-05
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	1e-05
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	2e-05
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	3e-05
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	4e-05
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	5e-05
d1wy7a1	201	c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A	8e-05
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	2e-04
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	3e-04
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	4e-04
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	5e-04
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	5e-04
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	0.001
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	0.001
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	0.003

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  342 bits (877), Expect = e-115
 Identities = 224/347 (64%), Positives = 280/347 (80%), Gaps = 32/347 (9%)

Query: 46  SYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVI 105
           SYAHFGIHEEMLKDEVRT+TYRNSM+HN+HLFK K+VLD+G GTGIL MFAAK+GA +VI
Sbjct: 1   SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVI 60

Query: 106 GIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESM 165
           GIECS+I +YA +IV  N L  VVTI+KGKVEE  +   ++KVDIIISEWMGYCLFYESM
Sbjct: 61  GIECSSISDYAVKIVKANKLDHVVTIIKGKVEE--VELPVEKVDIIISEWMGYCLFYESM 118

Query: 166 LDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGI 225
           L+TVL+ARDKWLA +GL+FPD+A+L++  IED                            
Sbjct: 119 LNTVLHARDKWLAPDGLIFPDRATLYVTAIED---------------------------- 150

Query: 226 EDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTITKA 285
             RQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT++CL+KE+D+YT+   
Sbjct: 151 --RQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVE 208

Query: 286 DLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHL 345
           DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ YTHWKQTVFY+ ++L
Sbjct: 209 DLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYL 268

Query: 346 TVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQV 392
           TVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DY++
Sbjct: 269 TVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRM 315

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  138 bits (347), Expect = 2e-37
 Identities = 69/104 (66%), Positives = 91/104 (87%)

Query: 416 HAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKK 475
            +PF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ YTHWKQTVFY+ ++LTVK 
Sbjct: 213 TSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKT 272

Query: 476 GEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR 519
           GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DYRMR
Sbjct: 273 GEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 316

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  308 bits (789), Expect = e-102
 Identities = 167/345 (48%), Positives = 221/345 (64%), Gaps = 34/345 (9%)

Query: 41  DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG 100
           DYYFDSY H+GIHEEML+D VRT++YRN++  NK LFK KIVLD+GCGTGILSMFAAK G
Sbjct: 1   DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60

Query: 101 AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCL 160
           A  VIG++ S+I+E AKE+V+ N  SD +T+L+GK+E+V LPF   KVDIIISEWMGY L
Sbjct: 61  AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPF--PKVDIIISEWMGYFL 118

Query: 161 FYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASL 220
            YESM+DTVLYARD +L   GL+FPDK S+ + G+ED                       
Sbjct: 119 LYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLED----------------------- 155

Query: 221 FICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLY 280
                   QYK++K+ +W +VYGFD S    + + EP+VD V+   V T+S  L E DL 
Sbjct: 156 -------SQYKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLN 208

Query: 281 TITKADLSFTSPFTLQVRRNDYVQALVTFFSVEF--SKCHKRIGFSTAPEAHYTHWKQTV 338
           T+  +DL+F S F L  +R D +  +VT+F + F   K  + + FST P A YTHWKQT+
Sbjct: 209 TVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTI 268

Query: 339 FYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCE 383
           FY  + L  + G+ + G     PN +NNRDL+  +   F+    +
Sbjct: 269 FYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGID 313

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  109 bits (272), Expect = 5e-27
 Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 7/110 (6%)

Query: 416 HAPFTLQVRRNDYVQALVTFFSVEF--SKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTV 473
            + F L  +R D +  +VT+F + F   K  + + FST P A YTHWKQT+FY  + L  
Sbjct: 218 KSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDA 277

Query: 474 KKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSES-----NDYRM 518
           + G+ + G     PN +NNRDL+  +   F+    + +         Y M
Sbjct: 278 ETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNSRSRKNEGSYLM 327

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  295 bits (755), Expect = 2e-97
 Identities = 150/337 (44%), Positives = 216/337 (64%), Gaps = 33/337 (9%)

Query: 44  FDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAAR 103
           F SY H+GIHEEMLKD++RT +YR+ +Y N H+FK K+VLD+GCGTGILSMFAAK+GA +
Sbjct: 1   FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK 60

Query: 104 VIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYE 163
           V+G++ S I+  A +I+  N L D +T++KGK+EEV LP  ++KVD+IISEWMGY L +E
Sbjct: 61  VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLP--VEKVDVIISEWMGYFLLFE 118

Query: 164 SMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFIC 223
           SMLD+VLYA++K+LA  G ++PD  ++ +  + D                          
Sbjct: 119 SMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSD-------------------------- 152

Query: 224 GIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTIT 283
                    D+I +WD+VYGF MSC+KK  I E +V+V+DPK +++  C +K ID +T +
Sbjct: 153 ----VNKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTS 208

Query: 284 KADLSFTSPFTLQVRRNDYVQALVTFFSVEFSK-CHKRIGFSTAPEAHYTHWKQTVFYLN 342
            +DL F+S FTL++ R     A+  +F + F K CH R+ FST P++  THWKQTVF L 
Sbjct: 209 ISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLE 268

Query: 343 EHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 379
           +  +VK GE + G   +  N ++ R L  T+ +N   
Sbjct: 269 KPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLNNST 305

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 3e-24
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 416 HAPFTLQVRRNDYVQALVTFFSVEFSK-CHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVK 474
            + FTL++ R     A+  +F + F K CH R+ FST P++  THWKQTVF L +  +VK
Sbjct: 215 SSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVK 274

Query: 475 KGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 505
            GE + G   +  N ++ R L  T+ +N   
Sbjct: 275 AGEALKGKVTVHKNKKDPRSLTVTLTLNNST 305

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 61.5 bits (148), Expect = 3e-11
 Identities = 20/130 (15%), Positives = 38/130 (29%), Gaps = 4/130 (3%)

Query: 66  YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNN 124
           +  +     +  +G  VLD+GCG G   +   ++G     G++ +   +  A+       
Sbjct: 12  FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK 71

Query: 125 LSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLL- 183
               V           +  G +   I       Y       LD       + L   G   
Sbjct: 72  RRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI 131

Query: 184 --FPDKASLF 191
              P +  + 
Sbjct: 132 MTVPSRDVIL 141

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 53.3 bits (127), Expect = 7e-09
 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 13/140 (9%)

Query: 45  DSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARV 104
           D +            EVR +     +       K  + +D+GCGTG +++  A       
Sbjct: 5   DEFIKNPSVPGPTAMEVRCL-----IMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVY 59

Query: 105 IGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYES 164
                   +   +  + ++ L D VT+++G     E    I  +DI +    G       
Sbjct: 60  AIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP--EALCKIPDIDIAVVGGSG------G 111

Query: 165 MLDTVLYARDKWLATNGLLF 184
            L  +L      L   G + 
Sbjct: 112 ELQEILRIIKDKLKPGGRII 131

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.0 bits (126), Expect = 3e-08
 Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 9/156 (5%)

Query: 40  RDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS 99
            D Y D  A       +     RT  Y+  +           VLD+ CGTG+ S+   + 
Sbjct: 18  PDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE 77

Query: 100 GAARVIGIECSNIVEYAKEIVDKNNLSD-----VVTILKGKVEEVELPFGIQKVDIIIS- 153
           G +         +++YA +              V+        + ++P G     +I   
Sbjct: 78  GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLG 137

Query: 154 ---EWMGYCLFYESMLDTVLYARDKWLATNGLLFPD 186
                +      +S     L      +   GLL  D
Sbjct: 138 NSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 52.1 bits (124), Expect = 4e-08
 Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 19/155 (12%)

Query: 38  TSRDYYFDSYAHFGIHEE----MLKDEVRTM-TYRNSMYHN---KHLFKGKIVLDIGCGT 89
                         +H E       D  + M +  N        K     ++V+D+  G 
Sbjct: 59  KPDYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGI 118

Query: 90  GILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV 148
           G LS+  A  G A+VI IE      ++  E +  N + D ++       +     G    
Sbjct: 119 GHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF---PGENIA 175

Query: 149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLL 183
           D I+   MGY +     +   L           ++
Sbjct: 176 DRIL---MGYVVRTHEFIPKAL----SIAKDGAII 203

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 6e-07
 Identities = 23/224 (10%), Positives = 56/224 (25%), Gaps = 23/224 (10%)

Query: 41  DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG 100
             Y  +Y  F        + ++               +G  ++DIG G  I  + AA   
Sbjct: 14  RDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS 73

Query: 101 AARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYC 159
              +   + ++   E  ++ + K   +   T              ++    +      + 
Sbjct: 74  FQDITLSDFTDRNREELEKWLKKEPGAYDWT------------PAVKFACELEGNSGRWE 121

Query: 160 LFYESMLDTVLYARDKWLATNGLLFPDKASLF--------ICGIEDLQGGQDHVVGQCVR 211
              E +   V       +     L P    L         +             +     
Sbjct: 122 EKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLAS 181

Query: 212 VLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIK 255
           +L P    +    +    Y   K  +       +   +++  + 
Sbjct: 182 LLKPGGHLVTTVTLRLPSYMVGKREFS--CVALEKGEVEQAVLD 223

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 8/146 (5%)

Query: 43  YFDSYAHFGIHEEMLKDEVRTMTYRNSM--YHNKHLFKGKIVLDIGCGTGILSMFAAKSG 100
            ++ +AH  I++++++ +V    + + +     ++       LD+ CGTG L+       
Sbjct: 2   CYNKFAH--IYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF 59

Query: 101 AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCL 160
                      ++  A+       L   +       +   L    +   I         +
Sbjct: 60  KNTWAVDLSQEMLSEAENKFRSQGLKPRLAC----QDISNLNINRKFDLITCCLDSTNYI 115

Query: 161 FYESMLDTVLYARDKWLATNGLLFPD 186
                L     A    L   G+   D
Sbjct: 116 IDSDDLKKYFKAVSNHLKEGGVFIFD 141

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 7/146 (4%)

Query: 43  YFDSYAHF--GIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG 100
            +   A +   I+   ++     + +   ++      + + VLD+ CGTGI ++  A+ G
Sbjct: 4   LYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG 63

Query: 101 AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCL 160
              V+G++    +        K     +  +      +V       + D +   +     
Sbjct: 64  -YEVVGLDLHEEMLRVARRKAKERNLKIEFL----QGDVLEIAFKNEFDAVTMFFSTIMY 118

Query: 161 FYESMLDTVLYARDKWLATNGLLFPD 186
           F E  L  +     + L   G+   D
Sbjct: 119 FDEEDLRKLFSKVAEALKPGGVFITD 144

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 45.0 bits (105), Expect = 8e-06
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 43  YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
           +  S +   IH    +++  T+           +  G  +LD+G G+G +    A+    
Sbjct: 4   FTISESEHRIHNPFTEEKYATLG------RVLRMKPGTRILDLGSGSGEMLCTWARDHGI 57

Query: 103 RVIGIECSN 111
              GI+ S+
Sbjct: 58  TGTGIDMSS 66

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 24/166 (14%)

Query: 75  HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKG 134
             F G  VLD+  G+G L++ A   G +  + +E +   +   +       ++    L  
Sbjct: 11  PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK 70

Query: 135 KVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICG 194
              E  +     + D++  +         + ++ +  A    L+   ++           
Sbjct: 71  MEAERAIDCLTGRFDLVFLDPPYAKETIVATIEAL--AAKNLLSEQVMV----------- 117

Query: 195 IEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDN 240
                     V      VL P + +      +++ Y   K+T + N
Sbjct: 118 ----------VCETDKTVLLPKEIATLGI-WKEKIYGISKVTVYVN 152

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 2/90 (2%)

Query: 75  HLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
            L KG   +D+G G G   + AA   G A   G E   +  +      ++      +  +
Sbjct: 213 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGM 272

Query: 133 KGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
           +    E  L       + +        +  
Sbjct: 273 RLNNVEFSLKKSFVDNNRVAELIPQCDVIL 302

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 11/109 (10%), Positives = 30/109 (27%), Gaps = 6/109 (5%)

Query: 76  LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGK 135
           L   + VLD+  G G ++   A     +V+  + +        +       +     + +
Sbjct: 13  LKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLT-----EDILKVARAFIEGNGHQQVE 66

Query: 136 VEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
             + +        +            +     + +    + L   G L 
Sbjct: 67  YVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL 115

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 6/106 (5%)

Query: 79  GKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEE 138
              VLDIG G G  ++  +       IG++ +  +        +    + V   +G  E 
Sbjct: 17  EHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES 75

Query: 139 VELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
           +  P     +         Y   + S +   +    + L  +G   
Sbjct: 76  LPFPDDSFDI-----ITCRYAAHHFSDVRKAVREVARVLKQDGRFL 116

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 72  HNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVT 130
           +N     G+ V+D G G GIL+  +   GA  V   +     +E AK      N      
Sbjct: 42  YNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVN------ 95

Query: 131 ILKGKVEEVELPFGI 145
            +   V E+   +  
Sbjct: 96  FMVADVSEISGKYDT 110

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 21/150 (14%)

Query: 37  MTSRD--YYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSM 94
           MT RD  Y+ + Y     H ++L                K +  G+  LD+GCG G  S+
Sbjct: 1   MTVRDENYFTEKYGLTRTHSDVLA-------------AAKVVAPGR-TLDLGCGNGRNSL 46

Query: 95  FAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154
           + A +G       +    +   + I     L ++ T L              + D I+S 
Sbjct: 47  YLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNT----LTFDGEYDFILS- 101

Query: 155 WMGYCLFYESMLDTVLYARDKWLATNGLLF 184
            +         +  ++    +     G   
Sbjct: 102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNL 131

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 76  LFKGKIVLDIGCGTGILSMFAAK--SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
           L  G  +L++G G+G +S +     +G   +  +E   + ++ A + + +      V   
Sbjct: 83  LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS 142

Query: 133 KGKV 136
           +  +
Sbjct: 143 RSDI 146

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 41.4 bits (96), Expect = 8e-05
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 77  FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
            +GK+V D+G GTG+LS  A   GA  VI +E     V+   E + +      V I
Sbjct: 45  IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFI 100

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 74  KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS 110
              F+   +L++G   G  +    +     +  +E S
Sbjct: 16  TPFFRPGNLLELGSFKGDFTSRLQEHF-NDITCVEAS 51

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 18/138 (13%)

Query: 38  TSRDYYFDSYAHF--GIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMF 95
            +     ++Y  F   ++ E   D V        M     +    + +D+G G G + + 
Sbjct: 115 VTDPEKLNNYEPFSPEVYGETSFDLVA------QMIDEIKMTDDDLFVDLGSGVGQVVLQ 168

Query: 96  AAK-SGAARVIGIECS---------NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI 145
            A  +      G+E +            E+ K +          T+ +G     E    I
Sbjct: 169 VAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI 228

Query: 146 QKVDIIISEWMGYCLFYE 163
               +I      +    +
Sbjct: 229 ANTSVIFVNNFAFGPEVD 246

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 6   ISRSGY-DAKSSNSKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTM 64
           +++ GY +      K S+  GDS       E M +R  + D+  +  + + ++       
Sbjct: 28  MAKEGYVNLLPVQHKRSRDPGDSA------EMMQARRAFLDAGHYQPLRDAIVA------ 75

Query: 65  TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGA-ARVIGIEC 109
                    +   K   VLDIGCG G  +   A +       G++ 
Sbjct: 76  -----QLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDV 116

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 1/91 (1%)

Query: 35  EDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSM 94
           +    R Y  ++YA                    +         G+ ++DIG G  +  +
Sbjct: 11  QRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQL 70

Query: 95  FAAKSGAARVIGIECS-NIVEYAKEIVDKNN 124
            +A S    +   +      +     + +  
Sbjct: 71  LSACSHFEDITMTDFLEVNRQELGRWLQEEP 101

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 76  LFKGKIVLDIGCGTGILSMFAAKSGA--ARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
           +  G  VL+ G G+G +S+F +K+     RVI  E   +  + AK+       S  ++ +
Sbjct: 96  INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV 155

Query: 133 KGKVEEVELPFG 144
           +   + V+    
Sbjct: 156 EEWPDNVDFIHK 167

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 5/142 (3%)

Query: 46  SYAHFGIHEEMLKDEVRTMTYRNSMYH---NKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
           +Y     H  +L   V    +     H        KG  VL++G G  I +    ++   
Sbjct: 19  AYDAADTHLRILGKPVM-ERWETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPID 77

Query: 103 RVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLF 161
               IEC+  + +  ++   +     +      +     LP G     +  +  +    +
Sbjct: 78  EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETW 137

Query: 162 YESMLDTVLYARDKWLATNGLL 183
           +    + +     + L   G+L
Sbjct: 138 HTHQFNFIKNHAFRLLKPGGVL 159

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 71  YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVV 129
           + + ++  G  VL   CG      + +  G   V+G E S   VE       +       
Sbjct: 13  WSSLNVVPGARVLVPLCGKSQDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQ 71

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 37.6 bits (86), Expect = 0.003
 Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 28/149 (18%)

Query: 39  SRDYYF-DSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAA 97
           +RD Y+ D Y  F ++                      + K   ++D GCG G L +   
Sbjct: 5   TRDLYYNDDYVSFLVNT------------------VWKITKPVHIVDYGCGYGYLGLVLM 46

Query: 98  K--SGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155
                 ++  GI+             +            + +  E+    +    I   +
Sbjct: 47  PLLPEGSKYTGIDSGE---TLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAF 103

Query: 156 MGYCLFYESMLDTVLYARDKWLATNGLLF 184
           + +    E+ML  ++      +   G + 
Sbjct: 104 LLHMTTPETMLQKMI----HSVKKGGKII 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	519
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	100.0
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	100.0
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	100.0
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.89
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.84
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.81
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.73
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.72
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.7
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.7
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.68
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.67
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.67
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.62
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.62
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.62
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.62
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.59
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.58
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.57
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.57
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.56
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.54
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.53
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.53
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.52
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.5
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.49
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.47
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.46
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.45
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.44
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.44
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.44
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.42
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.41
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.41
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.4
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.35
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.34
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.34
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.34
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.33
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.32
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.32
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.32
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.31
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.3
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.29
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.28
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.27
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.27
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.26
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.26
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.26
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.23
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.2
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.2
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.19
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.19
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.18
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.18
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.17
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.12
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.11
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.09
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.04
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.02
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.98
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.95
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.95
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.87
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.74
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.59
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.56
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.53
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.53
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.44
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.44
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.43
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.37
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.33
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.32
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.29
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.28
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.25
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.25
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.24
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.23
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.16
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.11
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.07
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.05
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.03
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.94
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.82
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.81
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.78
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.74
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.53
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.38
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.23
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.15
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.76
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.7
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.41
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	96.36
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.31
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.21
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.03
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.94
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.9
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.73
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.35
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.16
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.07
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.0
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.6
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.56
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	93.95
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.92
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.71
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	93.53
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	93.16
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	92.99
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.86
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	92.49
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	92.39
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.24
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	92.03
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	91.98
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.42
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	91.15
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	90.52
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	89.54
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.29
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	88.53
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	88.3
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.08
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	87.92
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	87.53
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	87.5
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	86.88
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	86.66
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	86.46
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.98
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	85.7
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	85.55
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	85.42
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	85.17
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	84.41
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	84.04
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	83.94
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	83.8
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	83.47
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	83.36
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	83.18
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	81.74
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	80.9
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	80.69
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	80.13

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.6e-60  Score=477.71  Aligned_cols=316  Identities=72%  Similarity=1.275  Sum_probs=299.0

Q ss_pred             ccccccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCC
Q psy14674         46 SYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNL  125 (519)
Q Consensus        46 ~y~~~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~  125 (519)
                      +|+++++|+.|++|..|+.+|+++|..+..+.+|++|||||||+|.++++||++|+++|+|+|.|+++..|+++++.+++
T Consensus         1 ~y~~~~~h~~Ml~D~~R~~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~   80 (316)
T d1oria_           1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL   80 (316)
T ss_dssp             CHHHHHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC
T ss_pred             CCccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCC
Confidence            58899999999999999999999998777778999999999999999999999999999999999877888899999999


Q ss_pred             CCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccccccccCCCccc
Q psy14674        126 SDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHV  205 (519)
Q Consensus       126 ~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~~~~~~~~  205 (519)
                      .++|+++++++.+++++.  +++|+|+++++++++.++..++.++.++.++|||||.++|+.++                
T Consensus        81 ~~~v~~~~~~~~~~~~~~--~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~----------------  142 (316)
T d1oria_          81 DHVVTIIKGKVEEVELPV--EKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRAT----------------  142 (316)
T ss_dssp             TTTEEEEESCTTTCCCSS--SCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEE----------------
T ss_pred             ccccceEeccHHHccccc--ceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEE----------------
Confidence            999999999999988776  89999999999999999999999999999999999999999999                


Q ss_pred             ccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhhhhhhcCCcccccCCCCcccCCceEEEEecCCCCCC
Q psy14674        206 VGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTITKA  285 (519)
Q Consensus       206 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~~~v~~~~~~~~ls~~~~~~~~dl~~~~~~  285 (519)
                                    +|++++++..++.....+|.+++|+||+++...+..+|.+...+|..++++|+.++++||.+...+
T Consensus       143 --------------~~~~~v~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~~~  208 (316)
T d1oria_         143 --------------LYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVE  208 (316)
T ss_dssp             --------------EEEEEECCHHHHHHHTTTTTCBTTBCCHHHHHHHHTSCEEECCCGGGEEEEEEEEEEEETTTCCGG
T ss_pred             --------------EEEEEecCHHHHhhhcccccccccccchhhhhhhccccEEEEecCceEeeCCEEeEEEcCCCCccc
Confidence                          777778777777777889999999999999999999999999999999999999999999999989


Q ss_pred             CceeeeeEEEEEEecceeeEEEEEEEEEEcCCCCceEEecCCCCCCCCeeeEEEeeCceeeecCCCEEEEEEEEEeCCCC
Q psy14674        286 DLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRN  365 (519)
Q Consensus       286 ~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~~~v~lsT~P~~~~thW~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~  365 (519)
                      ++.++..+++++.++|++|||++||+++|+++++.+.+||+|.++.|||+|++|+|++|+.|++||.|.|++++++++++
T Consensus       209 ~l~~~~~~~~~~~~~g~~hg~~~wFd~~l~~~~~~v~lST~P~~~~thW~Q~v~~l~~p~~v~~g~~i~~~i~~~~~~~~  288 (316)
T d1oria_         209 DLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKN  288 (316)
T ss_dssp             GGSEEEEEEEEBCSSEEEEEEEEEEEEECTTSSSCCEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSS
T ss_pred             CccEEEEEEEeecCCceEEEEEEEEEEEeeCCCCCeEEECCCCcCCCceecEEEEcCCceEcCCCCEEEEEEEEEECCCC
Confidence            99999999999999999999999999999977788999999999999999999999999999999999999999999999


Q ss_pred             CcceEEEEEEEecCceeeeccceeEEec
Q psy14674        366 NRDLDFTVEVNFKGELCEMSESNDYQVD  393 (519)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (519)
                      +|+++|+++++++|+.++.+.+..|+|+
T Consensus       289 ~r~~~~~~~~~~~~~~~~~~~~~~y~~~  316 (316)
T d1oria_         289 NRDLDFTIDLDFKGQLCELSCSTDYRMR  316 (316)
T ss_dssp             TTCEEEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CceEEEEEEEEecCeeeccccceeeecC
Confidence            9999999999999999999999999985

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-58  Score=468.89  Aligned_cols=320  Identities=52%  Similarity=0.951  Sum_probs=294.9

Q ss_pred             chhhhccccccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHH
Q psy14674         41 DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIV  120 (519)
Q Consensus        41 ~~yf~~y~~~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~  120 (519)
                      ++||++|++++.|..|++|..|+.+|+++|..+....+|++|||||||+|.+++++|++|+++|+|+|.|++++.|++++
T Consensus         1 d~yf~~y~~~~~h~~ml~D~~r~~~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~   80 (328)
T d1g6q1_           1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELV   80 (328)
T ss_dssp             CCCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHH
T ss_pred             CCcchhhcCchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence            46999999999999999999999999999987777789999999999999999999999999999999999899999999


Q ss_pred             HHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccccccccC
Q psy14674        121 DKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQG  200 (519)
Q Consensus       121 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~~~  200 (519)
                      +.+++.++++++++++.+++++.  +++|+|+++++++++.++..+..++.++.++|||||+++|+.++           
T Consensus        81 ~~~~~~~~i~~i~~~~~~l~~~~--~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~-----------  147 (328)
T d1g6q1_          81 ELNGFSDKITLLRGKLEDVHLPF--PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCS-----------  147 (328)
T ss_dssp             HHTTCTTTEEEEESCTTTSCCSS--SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEE-----------
T ss_pred             HHhCccccceEEEeehhhccCcc--cceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeecc-----------
Confidence            99999999999999999988876  89999999999999999999999999999999999999999999           


Q ss_pred             CCcccccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhhhhhhcCCcccccCCCCcccCCceEEEEecC
Q psy14674        201 GQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLY  280 (519)
Q Consensus       201 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~~~v~~~~~~~~ls~~~~~~~~dl~  280 (519)
                                         +|+++++...+..+++.+|.++||+|++++......+|.+..+++.++++.++.+..+|+.
T Consensus       148 -------------------~~~~~v~~~~l~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (328)
T d1g6q1_         148 -------------------IHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLN  208 (328)
T ss_dssp             -------------------EEEEEECCHHHHHHHHHHTTCBTTBCCTTHHHHHTTSCEEECCCGGGBCBCCEEEEEEETT
T ss_pred             -------------------eeeecccCHHHHHHhccccccccccccchhhhhhccCcEEEEecCceeecCceeEEEeccc
Confidence                               7777888777777788899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeeeeEEEEEEecceeeEEEEEEEEEEcCC--CCceEEecCCCCCCCCeeeEEEeeCceeeecCCCEEEEEEE
Q psy14674        281 TITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKC--HKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFG  358 (519)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~--~~~v~lsT~P~~~~thW~q~v~~l~~p~~v~~g~~i~~~~~  358 (519)
                      +.+.+++.+...+++++.++|++|||++||+++|++.  ..++.|||+|.++.|||+|++|+|++|+.|++||+|+|+++
T Consensus       209 ~~~~~~l~~~~~~~~~~~~~g~~hg~~~wFd~~l~~~~~~~~i~lST~P~~~~thW~Q~v~~l~~pi~v~~gd~i~~~~~  288 (328)
T d1g6q1_         209 TVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELV  288 (328)
T ss_dssp             TCCGGGGSEEEEEEEEBCSSCEEEEEEEEEEEECCCCTTSCCCEEECSTTSCCCTTCEEEEEEEEEEECCTTCEEEEEEE
T ss_pred             ccchhhcceeeeEEEEecCCcEEEEEEEEEEEEccCCCCCCceEEeCCCCCCCCceeeEEEEeCCceEeCCCCEEEEEEE
Confidence            9999999999999999999999999999999999853  34689999999999999999999999999999999999999


Q ss_pred             EEeCCCCCcceEEEEEEEecCcee-----eeccceeEEe
Q psy14674        359 MQPNPRNNRDLDFTVEVNFKGELC-----EMSESNDYQV  392 (519)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  392 (519)
                      |++++.|.|.++|+++|.++....     ..+..++|.|
T Consensus       289 ~~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (328)
T d1g6q1_         289 CSPNEKNNRDLNIKISYKFESNGIDGNSRSRKNEGSYLM  327 (328)
T ss_dssp             EEEETTEEEEEEEEEEEEEECCSSTHHHHCEEEEEEEEE
T ss_pred             EEECCCCCeeEEEEEEEEEEecCCCCcccceeccceEec
Confidence            999999999999999998764322     2333455655

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-56  Score=447.66  Aligned_cols=301  Identities=50%  Similarity=0.933  Sum_probs=281.3

Q ss_pred             hhccccccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHC
Q psy14674         44 FDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKN  123 (519)
Q Consensus        44 f~~y~~~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~  123 (519)
                      |++|++++.|..|++|..|+.+|++||.++....+|++|||||||+|.+++++|++|+++|+|+|.|+.+..|++++..+
T Consensus         1 ~~~y~~~~~h~~ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~   80 (311)
T d2fyta1           1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLN   80 (311)
T ss_dssp             CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHT
T ss_pred             CCCcccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHh
Confidence            68999999999999999999999999998888889999999999999999999999999999999997556788888899


Q ss_pred             CCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccccccccCCCc
Q psy14674        124 NLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQD  203 (519)
Q Consensus       124 ~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~~~~~~  203 (519)
                      +..+++++++++++++..+.  ++||+|+|+++++++.++..++.++.++.++|||||.++|+.++              
T Consensus        81 ~~~~~i~~~~~~~~~l~~~~--~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~~--------------  144 (311)
T d2fyta1          81 KLEDTITLIKGKIEEVHLPV--EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICT--------------  144 (311)
T ss_dssp             TCTTTEEEEESCTTTSCCSC--SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEE--------------
T ss_pred             CCCccceEEEeeHHHhcCcc--ccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEeccccc--------------
Confidence            99999999999999987776  89999999999999999999999999999999999999999999              


Q ss_pred             ccccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhhhhhhcCCcccccCCCCcccCCceEEEEecCCCC
Q psy14674        204 HVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTIT  283 (519)
Q Consensus       204 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~~~v~~~~~~~~ls~~~~~~~~dl~~~~  283 (519)
                                      +|+++++...+......+|.++||+|++++.+....+|.+..+++..++++|+.++++|+.+..
T Consensus       145 ----------------~~~~~v~~~~~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~  208 (311)
T d2fyta1         145 ----------------ISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTS  208 (311)
T ss_dssp             ----------------EEEEEECCHHHHHHHTGGGGCBTTBCCGGGHHHHTTBCEEECCCGGGBCBCCEEEEEEETTTCC
T ss_pred             ----------------eEEEEecCHHHHHhhhccccccccccccchhhccccccEEEecChhheecCCEeEEEeccCcCc
Confidence                            7777777777777778899999999999999998899999999999999999999999999999


Q ss_pred             CCCceeeeeEEEEEEecceeeEEEEEEEEEEcC-CCCceEEecCCCCCCCCeeeEEEeeCceeeecCCCEEEEEEEEEeC
Q psy14674        284 KADLSFTSPFTLQVRRNDYVQALVTFFSVEFSK-CHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPN  362 (519)
Q Consensus       284 ~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~-~~~~v~lsT~P~~~~thW~q~v~~l~~p~~v~~g~~i~~~~~~~~~  362 (519)
                      .+++.++..+++++.++|++|||++|||++|+. .++++.+||+|..+.|||+|++++|++|+.|++||.|+|++++.++
T Consensus       209 ~~~~~~~~~~~~~~~~~g~~~g~~~Wfd~~f~~~~~~~~~lST~P~~~~thW~q~~~~l~~p~~v~~gd~l~~~~~~~~~  288 (311)
T d2fyta1         209 ISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKN  288 (311)
T ss_dssp             GGGGSEEEEEEEEBCSCEEEEEEEEEEEEEECTTCSSCEEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEEC
T ss_pred             cccccEEEEEEeeecCCcceEEEEEEEEEEEECCCCCceEEeCCCCcCCCccccEEEEeCCceEeCCCCEEEEEEEEEEC
Confidence            999999999999999999999999999999975 3578999999999999999999999999999999999999999999


Q ss_pred             CCCCcceEEEEEEE
Q psy14674        363 PRNNRDLDFTVEVN  376 (519)
Q Consensus       363 ~~~~~~~~~~~~~~  376 (519)
                      +.|.|+++|+++++
T Consensus       289 ~~~~r~~~~~~~~~  302 (311)
T d2fyta1         289 KKDPRSLTVTLTLN  302 (311)
T ss_dssp             SSCTTSEEEEEEET
T ss_pred             CCCCEEEEEEEEEe
Confidence            99999999999875

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.6e-23  Score=208.96  Aligned_cols=122  Identities=59%  Similarity=1.080  Sum_probs=112.3

Q ss_pred             cccccccccceeccc-eeeeeceEEEEeecceeeEEEEEEEEEEcCCCceeEEecCCCCCCCCceeEEEeecccccccCC
Q psy14674        398 ALGLRDRDCMYTKLY-TIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKG  476 (519)
Q Consensus       398 ~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~~~~v~lsT~P~~~~THWkQt~~~l~~~~~v~~g  476 (519)
                      +..+..+|+.+.+.+ +.++.+|+++++++|.+|||++|||+.|.+++..+.|||||.+|.|||+|++|+|++|+.|++|
T Consensus       194 p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~g~~hg~~~wFd~~l~~~~~~v~lST~P~~~~thW~Q~v~~l~~p~~v~~g  273 (316)
T d1oria_         194 ACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTG  273 (316)
T ss_dssp             EEEEEEEETTTCCGGGGSEEEEEEEEBCSSEEEEEEEEEEEEECTTSSSCCEEECSTTSCCCTTCEEEEEEEEEEEECTT
T ss_pred             CEEeEEEcCCCCcccCccEEEEEEEeecCCceEEEEEEEEEEEeeCCCCCeEEECCCCcCCCceecEEEEcCCceEcCCC
Confidence            345667777775544 5788999999999999999999999999988888999999999999999999999999999999


Q ss_pred             CEEEEEEEEEeCCCCCceeEEEEEEEEcCceeeeeeeeeEeeC
Q psy14674        477 EEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR  519 (519)
Q Consensus       477 ~~i~g~~~~~~~~~~~r~l~i~~~~~~~~~~~~~~~~~~~~~~  519 (519)
                      |.|+|+|+|+++++++|+++|+++|.++|+......+..|+||
T Consensus       274 ~~i~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~y~~~  316 (316)
T d1oria_         274 EEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR  316 (316)
T ss_dssp             CEEEEEEEEEECSSSTTCEEEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CEEEEEEEEEECCCCCceEEEEEEEEecCeeeccccceeeecC
Confidence            9999999999999999999999999999999998889999997

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.3e-21  Score=195.99  Aligned_cols=119  Identities=32%  Similarity=0.615  Sum_probs=101.1

Q ss_pred             cccccccceeccc-eeeeeceEEEEeecceeeEEEEEEEEEEcCC--CceeEEecCCCCCCCCceeEEEeecccccccCC
Q psy14674        400 GLRDRDCMYTKLY-TIVHAPFTLQVRRNDYVQALVTFFSVEFSKC--HKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKG  476 (519)
Q Consensus       400 ~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~--~~~v~lsT~P~~~~THWkQt~~~l~~~~~v~~g  476 (519)
                      .+..+|+.+.+.. +.+...|+++++++|.+|||++|||+.|.++  ..++.|||||+++.|||+|++|+|++|+.|++|
T Consensus       201 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~hg~~~wFd~~l~~~~~~~~i~lST~P~~~~thW~Q~v~~l~~pi~v~~g  280 (328)
T d1g6q1_         201 KLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETG  280 (328)
T ss_dssp             EEEEEETTTCCGGGGSEEEEEEEEBCSSCEEEEEEEEEEEECCCCTTSCCCEEECSTTSCCCTTCEEEEEEEEEEECCTT
T ss_pred             eEEEecccccchhhcceeeeEEEEecCCcEEEEEEEEEEEEccCCCCCCceEEeCCCCCCCCceeeEEEEeCCceEeCCC
Confidence            4445666664443 5788999999999999999999999999764  457999999999999999999999999999999


Q ss_pred             CEEEEEEEEEeCCCCCceeEEEEEEEEcC-----ceeeeeeeeeEee
Q psy14674        477 EEVVGSFGMQPNPRNNRDLDFTVEVNFKG-----ELCEMSESNDYRM  518 (519)
Q Consensus       477 ~~i~g~~~~~~~~~~~r~l~i~~~~~~~~-----~~~~~~~~~~~~~  518 (519)
                      |.|+|++.|++|+.|.|.|+|+++|.++.     +..+.+....|+|
T Consensus       281 d~i~~~~~~~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (328)
T d1g6q1_         281 DTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNSRSRKNEGSYLM  327 (328)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEEEEEEECCSSTHHHHCEEEEEEEEE
T ss_pred             CEEEEEEEEEECCCCCeeEEEEEEEEEEecCCCCcccceeccceEec
Confidence            99999999999999999999999998654     3333444567776

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.4e-20  Score=184.25  Aligned_cols=106  Identities=35%  Similarity=0.629  Sum_probs=94.3

Q ss_pred             ccccccccceeccc-eeeeeceEEEEeecceeeEEEEEEEEEEcCC-CceeEEecCCCCCCCCceeEEEeecccccccCC
Q psy14674        399 LGLRDRDCMYTKLY-TIVHAPFTLQVRRNDYVQALVTFFSVEFSKC-HKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKG  476 (519)
Q Consensus       399 ~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~-~~~v~lsT~P~~~~THWkQt~~~l~~~~~v~~g  476 (519)
                      ..+..+|+.+.+.+ ..++.+|+++++++|.+|||++|||+.|... +..+.|||+|..+.|||+|++|+|++|++|++|
T Consensus       197 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~Wfd~~f~~~~~~~~~lST~P~~~~thW~q~~~~l~~p~~v~~g  276 (311)
T d2fyta1         197 CGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAG  276 (311)
T ss_dssp             EEEEEEETTTCCGGGGSEEEEEEEEBCSCEEEEEEEEEEEEEECTTCSSCEEEECSTTSCCCTTCEEEEEEEEEEEECTT
T ss_pred             EeEEEeccCcCccccccEEEEEEeeecCCcceEEEEEEEEEEEECCCCCceEEeCCCCcCCCccccEEEEeCCceEeCCC
Confidence            34566777765444 5688999999999999999999999999763 567999999999999999999999999999999


Q ss_pred             CEEEEEEEEEeCCCCCceeEEEEEEEEc
Q psy14674        477 EEVVGSFGMQPNPRNNRDLDFTVEVNFK  504 (519)
Q Consensus       477 ~~i~g~~~~~~~~~~~r~l~i~~~~~~~  504 (519)
                      |.|+|+++|++++.|.|.|+|+++|+.+
T Consensus       277 d~l~~~~~~~~~~~~~r~~~~~~~~~~~  304 (311)
T d2fyta1         277 EALKGKVTVHKNKKDPRSLTVTLTLNNS  304 (311)
T ss_dssp             CEEEEEEEEEECSSCTTSEEEEEEETTE
T ss_pred             CEEEEEEEEEECCCCCEEEEEEEEEeCC
Confidence            9999999999999999999999998644

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=1.2e-17  Score=159.90  Aligned_cols=118  Identities=22%  Similarity=0.401  Sum_probs=97.4

Q ss_pred             HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCC
Q psy14674         66 YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFG  144 (519)
Q Consensus        66 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~  144 (519)
                      +...++......++++|||||||+|.++..++++|+ +|+|||+| .|++.|+++...+++  +++++++|+++++++  
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~--  103 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK--  103 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC--
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc--cchheehhhhhcccc--
Confidence            334455556667788999999999999999999987 99999999 699999999998876  489999999998776  


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                       ++||+|+|............+..+++.+.++|||||+++.+...
T Consensus       104 -~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         104 -NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             -SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence             68999999643322334456778899999999999999987655

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.72  E-value=1.2e-17  Score=158.62  Aligned_cols=111  Identities=21%  Similarity=0.323  Sum_probs=96.1

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .+.....+.+|.+|||||||+|.++..+++.++ +|+|||+| .|++.|++++..+++.+ +.++++|++++++++  ++
T Consensus         7 ~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~-~~~~~~d~~~~~~~~--~~   82 (234)
T d1xxla_           7 LMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAESLPFPD--DS   82 (234)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTBCCSCT--TC
T ss_pred             HHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccccc-ccccccccccccccc--cc
Confidence            344556889999999999999999999999875 99999999 69999999999988854 999999999987776  89


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ||+|+|..+.+++   .....+++++.++|||||.++..
T Consensus        83 fD~v~~~~~l~~~---~d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          83 FDIITCRYAAHHF---SDVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             EEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceeeeeceeecc---cCHHHHHHHHHHeeCCCcEEEEE
Confidence            9999997774443   45788899999999999988753

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.70  E-value=2.9e-17  Score=155.07  Aligned_cols=109  Identities=17%  Similarity=0.237  Sum_probs=94.0

Q ss_pred             HhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674         71 YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD  149 (519)
Q Consensus        71 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D  149 (519)
                      ++...+.++.+|||||||+|.++..+++.|. +|+|+|+| +|++.|+++++..+..+ ++++++|++++++++  ++||
T Consensus         8 l~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~-i~~~~~d~~~l~~~~--~~fD   83 (231)
T d1vl5a_           8 MQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQMPFTD--ERFH   83 (231)
T ss_dssp             HHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCC-CCCSCT--TCEE
T ss_pred             HHhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccc-ccccccccccccccc--cccc
Confidence            3446788999999999999999999999975 99999999 69999999999988764 999999999987776  8999


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +|+|..+.+++   .....++.++.++|||||+++..
T Consensus        84 ~v~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          84 IVTCRIAAHHF---PNPASFVSEAYRVLKKGGQLLLV  117 (231)
T ss_dssp             EEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccccccc---CCHHHHHHHHHHhcCCCcEEEEE
Confidence            99998775554   45778899999999999988854

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=4.1e-17  Score=155.95  Aligned_cols=115  Identities=16%  Similarity=0.179  Sum_probs=97.6

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .+.....+.+|++|||||||+|.++..+++....+|+|||+| .|++.|+++.+.+|+.++++++++|+.++ .++  ++
T Consensus        24 ~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~--~~  100 (245)
T d1nkva_          24 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VAN--EK  100 (245)
T ss_dssp             HHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCS--SC
T ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-ccc--Cc
Confidence            344557889999999999999999998887633499999999 69999999999999999999999999986 344  89


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ||+|+|..+.+++   .++..++.++.++|||||+++.....
T Consensus       101 fD~v~~~~~~~~~---~d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_         101 CDVAACVGATWIA---GGFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             EEEEEEESCGGGT---SSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             eeEEEEEehhhcc---CCHHHHHHHHHHHcCcCcEEEEEecc
Confidence            9999998775544   34678899999999999999976543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=9.4e-17  Score=150.56  Aligned_cols=108  Identities=20%  Similarity=0.275  Sum_probs=91.7

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      +.++.+|||||||+|.++..+++.|. +|+|+|+| +|++.|+++....+..  +.++.+|+.+++++.  ++||+|+|.
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~--~~~~~~d~~~l~~~~--~~fD~I~~~  109 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESN--VEFIVGDARKLSFED--KTFDYVIFI  109 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC--CEEEECCTTSCCSCT--TCEEEEEEE
T ss_pred             cCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhcccccc--ccccccccccccccC--cCceEEEEe
Confidence            46778999999999999999999876 89999999 6999999999887753  688999999887776  899999998


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .+.+++.. ..+..+++.+.++|||||.++....+
T Consensus       110 ~~l~~~~~-~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         110 DSIVHFEP-LELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             SCGGGCCH-HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cchhhCCh-hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            87666543 35778899999999999998866544

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.67  E-value=1e-16  Score=156.39  Aligned_cols=118  Identities=16%  Similarity=0.099  Sum_probs=99.7

Q ss_pred             HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC
Q psy14674         65 TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF  143 (519)
Q Consensus        65 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~  143 (519)
                      .+.+.+.....+.++.+|||||||+|.++..+++....+|+|||+| .|++.|+++....|+.++++++++|+++++++.
T Consensus        54 ~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~  133 (282)
T d2o57a1          54 WLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED  133 (282)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccc
Confidence            3444455566788999999999999999999988633499999999 699999999999999999999999999987776


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                        ++||+|+|..+.+++   .....++.++.++|||||.++...
T Consensus       134 --~sfD~V~~~~~l~h~---~d~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         134 --NSYDFIWSQDAFLHS---PDKLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             --TCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --cccchhhccchhhhc---cCHHHHHHHHHHhcCCCcEEEEEE
Confidence              899999997775544   356788999999999999988643

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.67  E-value=4.6e-17  Score=155.60  Aligned_cols=108  Identities=18%  Similarity=0.189  Sum_probs=91.6

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..++++|||||||+|.++..+++.|. +|+|||+| +|++.|+++....++.  ++++++|+.+++++   ++||+|+|.
T Consensus        35 ~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~--v~~~~~d~~~~~~~---~~fD~i~~~  108 (246)
T d1y8ca_          35 NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLK--PRLACQDISNLNIN---RKFDLITCC  108 (246)
T ss_dssp             TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCC--CEEECCCGGGCCCS---CCEEEEEEC
T ss_pred             CCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCcc--ceeeccchhhhccc---cccccccee
Confidence            45568999999999999999999987 99999999 6999999999888763  89999999987765   789999984


Q ss_pred             -ccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        155 -WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       155 -~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                       ...+++.....+..+++.++++|||||.++.+..+
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  144 (246)
T d1y8ca_         109 LDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             TTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             eeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence             23344555667888999999999999999976544

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.62  E-value=6.5e-16  Score=141.28  Aligned_cols=111  Identities=22%  Similarity=0.313  Sum_probs=92.5

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      ++....+.++.+|||+|||+|.+++.+|+.+ .+|+|+|++ ++++.|+++++.+|+.++++++++|+.+...+.  +.|
T Consensus        25 il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~--~~~  101 (186)
T d1l3ia_          25 IMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI--PDI  101 (186)
T ss_dssp             HHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS--CCE
T ss_pred             HHHhcCCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccccc--CCc
Confidence            3334567899999999999999999999874 599999999 699999999999999989999999998875554  789


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+|++....      .....++..+.+.|||||+++....+
T Consensus       102 D~v~~~~~~------~~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_         102 DIAVVGGSG------GELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             EEEEESCCT------TCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             CEEEEeCcc------ccchHHHHHHHHHhCcCCEEEEEeec
Confidence            999986542      22456788888999999998865433

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.62  E-value=5.5e-16  Score=148.68  Aligned_cols=112  Identities=17%  Similarity=0.162  Sum_probs=94.6

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ...++++|||||||+|..+..+++.|.++|+|||+| +|++.|+++....+...++.++++|+....+.. .++||+|+|
T Consensus        21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~-~~~fD~V~~   99 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL-GKEFDVISS   99 (252)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC-SSCEEEEEE
T ss_pred             hCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc-cccceEEEE
Confidence            456889999999999999999998888899999999 699999999998888878999999986554422 278999999


Q ss_pred             ecccccc-ccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        154 EWMGYCL-FYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       154 ~~~~~~l-~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ..+.++. ..+..+..++..+.++|||||+++...
T Consensus       100 ~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~  134 (252)
T d1ri5a_         100 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  134 (252)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence            8776554 456678889999999999999998543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=2.5e-16  Score=153.75  Aligned_cols=177  Identities=17%  Similarity=0.083  Sum_probs=123.0

Q ss_pred             HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674         68 NSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI  145 (519)
Q Consensus        68 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  145 (519)
                      +.+.+...+.+|.+|||||||.|.++..+|+. |+ +|+|+++| ++++.|+++++..|+.+++++...|..   .++  
T Consensus        51 ~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~~~--  124 (291)
T d1kpia_          51 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EFD--  124 (291)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GCC--
T ss_pred             HHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---ccc--
Confidence            35667788999999999999999999988765 66 99999999 699999999999999999999888864   233  


Q ss_pred             ceeeEEEEecccccccc------chhHHHHHHHHhcccCcCeEEEccCCcccccccccc-cCCCc----ccccceeEEec
Q psy14674        146 QKVDIIISEWMGYCLFY------ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDL-QGGQD----HVVGQCVRVLF  214 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~------e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~-~~~~~----~~~~~~~~~~~  214 (519)
                      ++||.|+|..+..++..      ...++.+++.+.++|||||+++.+..+.--...... ....+    ....++.+++|
T Consensus       125 ~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiF  204 (291)
T d1kpia_         125 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF  204 (291)
T ss_dssp             CCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred             cccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhc
Confidence            78999999777655543      245789999999999999999977654111000000 00000    11235677788


Q ss_pred             CCCc----ceeeecccCccccccceeeeecccccChhhhh
Q psy14674        215 PDKA----SLFICGIEDRQYKEDKITWWDNVYGFDMSCIK  250 (519)
Q Consensus       215 p~~~----~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~  250 (519)
                      |++.    +.+...++..++....+..+...|...+..+.
T Consensus       205 pgg~lps~~~~~~~~e~~gl~v~~~~~~~~hYa~TL~~W~  244 (291)
T d1kpia_         205 PGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWA  244 (291)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCEEEEEEECGGGHHHHHHHHH
T ss_pred             CCCCCCCHHHHHhhhcccccccceeeeccccHHHHHHHHH
Confidence            8754    33344455556654444444455554444443

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=2.6e-16  Score=153.23  Aligned_cols=175  Identities=17%  Similarity=0.175  Sum_probs=123.5

Q ss_pred             HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674         68 NSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI  145 (519)
Q Consensus        68 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  145 (519)
                      +.+.....+.+|.+|||||||.|.+++.+|+. |+ +|+||++| +.++.|++++++.|+.+++++..+|..++  +   
T Consensus        52 ~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~--~---  125 (285)
T d1kpga_          52 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--D---  125 (285)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC--C---
T ss_pred             HHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc--c---
Confidence            45667788999999999999999999987776 65 99999999 69999999999999999999999998754  3   


Q ss_pred             ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccccccccCCCc-----ccccceeEEecCCCc--
Q psy14674        146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQD-----HVVGQCVRVLFPDKA--  218 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~p~~~--  218 (519)
                      ++||.|+|-.+..++.. .....+++++.++|||||.++....+..............     ....++.+++||++.  
T Consensus       126 ~~fD~i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lP  204 (285)
T d1kpga_         126 EPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP  204 (285)
T ss_dssp             CCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC
T ss_pred             ccccceeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCC
Confidence            78999999877666544 3467889999999999999997655411000000000000     112356778888854  


Q ss_pred             --ceeeecccCccccccceeeeecccccChhhh
Q psy14674        219 --SLFICGIEDRQYKEDKITWWDNVYGFDMSCI  249 (519)
Q Consensus       219 --~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~  249 (519)
                        +.+...++..++....+..+...|-..+..+
T Consensus       205 sl~~~~~~~e~agf~v~~~~~~~~hYarTl~~W  237 (285)
T d1kpga_         205 SIPMVQECASANGFTVTRVQSLQPHYAKTLDLW  237 (285)
T ss_dssp             CHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHH
T ss_pred             ChhhHHHHHHHhchhhcccccchhhHHHHHHHH
Confidence              2344455666666555444444444344443

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.59  E-value=2.8e-15  Score=138.27  Aligned_cols=103  Identities=17%  Similarity=0.213  Sum_probs=89.3

Q ss_pred             CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      ++.+|||||||+|..+..+++.|. +|+|+|+| +|++.|+++.+..++.+ +++..+|+.++..+   ++||+|+|..+
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~d~~~~~~~---~~fD~I~~~~~  104 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDN-LQTDLVDLNTLTFD---GEYDFILSTVV  104 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTT-EEEEECCTTTCCCC---CCEEEEEEESC
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccc-hhhhheeccccccc---ccccEEEEeee
Confidence            455999999999999999999987 99999999 69999999999988864 89999999887654   78999999888


Q ss_pred             ccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      .+++.. .....+++.+.++|+|||+++..
T Consensus       105 ~~~~~~-~~~~~~l~~~~~~L~pgG~~~~~  133 (198)
T d2i6ga1         105 MMFLEA-QTIPGLIANMQRCTKPGGYNLIV  133 (198)
T ss_dssp             GGGSCT-THHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eecCCH-HHHHHHHHHHHHHcCCCcEEEEE
Confidence            776644 45778899999999999998754

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=7.8e-16  Score=146.10  Aligned_cols=102  Identities=24%  Similarity=0.333  Sum_probs=82.5

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      .+.++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.|+++.    ..   .++.++++++++++  ++||+|+|
T Consensus        39 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~----~~---~~~~~~~~~l~~~~--~~fD~ii~  108 (246)
T d2avna1          39 YLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKG----VK---NVVEAKAEDLPFPS--GAFEAVLA  108 (246)
T ss_dssp             HCCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHT----CS---CEEECCTTSCCSCT--TCEEEEEE
T ss_pred             hcCCCCEEEEECCCCchhcccccccce-EEEEeeccccccccccccc----cc---cccccccccccccc--ccccceee
Confidence            345778999999999999999999987 89999999 6999998752    21   36789999887766  89999998


Q ss_pred             e-ccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        154 E-WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~-~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      . .+.+++   .....+++.+.++|||||+++.+..+
T Consensus       109 ~~~~~~~~---~d~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1         109 LGDVLSYV---ENKDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             CSSHHHHC---SCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             ecchhhhh---hhHHHHHHHHHhhcCcCcEEEEEECC
Confidence            5 354444   34667889999999999999976544

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.3e-15  Score=143.06  Aligned_cols=108  Identities=17%  Similarity=0.146  Sum_probs=90.7

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ...++.+|||||||+|.++..+++.+..+|+|||+| +|++.|+++++..+.. +++++++|++++.++.  ++||+|++
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~~~~~~~--~~fD~I~~  133 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDFTPEP--DSYDVIWI  133 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGCCCCS--SCEEEEEE
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccc-cccccccccccccccc--cccccccc
Confidence            455678999999999999998876666799999999 6999999998877764 4899999999987665  89999999


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ..+.+++..+ .+..++..++++|||||.++..
T Consensus       134 ~~~l~h~~~~-~~~~~l~~i~~~Lk~~G~~~i~  165 (222)
T d2ex4a1         134 QWVIGHLTDQ-HLAEFLRRCKGSLRPNGIIVIK  165 (222)
T ss_dssp             ESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccchhh-hhhhHHHHHHHhcCCcceEEEE
Confidence            8887766543 4567899999999999999854

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.57  E-value=6e-15  Score=143.35  Aligned_cols=173  Identities=17%  Similarity=0.148  Sum_probs=122.1

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      .++....+.+|.+|||||||+|.++..+++. |+ +|+|||+| ++++.|++++++.++.+++.+...|..++  +   +
T Consensus        43 ~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--~---~  116 (280)
T d2fk8a1          43 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--A---E  116 (280)
T ss_dssp             HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--C---C
T ss_pred             HHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh--c---c
Confidence            4667778999999999999999999999887 65 99999999 69999999999999998899988887643  3   7


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccccccccCC------CcccccceeEEecCCCc--
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGG------QDHVVGQCVRVLFPDKA--  218 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~p~~~--  218 (519)
                      +||.|+|..+.+++.. ..++.+++.+.++|||||.++........ +.......      ......++.+++||++.  
T Consensus       117 ~fD~i~si~~~eh~~~-~~~~~~f~~i~~~LkpgG~~~i~~i~~~~-~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lP  194 (280)
T d2fk8a1         117 PVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSSVSYH-PYEMAARGKKLSFETARFIKFIVTEIFPGGRLP  194 (280)
T ss_dssp             CCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEEECCC-HHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred             chhhhhHhhHHHHhhh-hhHHHHHHHHHhccCCCceEEEEEeeccC-cchhhhcccccccccccccchhhhhccCCCccc
Confidence            8999999888766643 45788999999999999999876533110 00000000      01123466778888764  


Q ss_pred             --ceeeecccCccccccceeeeecccccChhhh
Q psy14674        219 --SLFICGIEDRQYKEDKITWWDNVYGFDMSCI  249 (519)
Q Consensus       219 --~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~  249 (519)
                        +.+...++..++....+.-+...|...+..+
T Consensus       195 S~~~l~~~~e~aGf~v~~~~~~~~hYa~TL~~W  227 (280)
T d2fk8a1         195 STEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIW  227 (280)
T ss_dssp             CHHHHHHHHHHTTCBCCCCEECHHHHHHHHHHH
T ss_pred             chHhhhhhHHhhccccceeeecccCHHHHHHHH
Confidence              2333445555565444433333444444444

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.56  E-value=7.2e-15  Score=135.12  Aligned_cols=110  Identities=21%  Similarity=0.308  Sum_probs=91.1

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCC-cEEEEEceeeEeecCCCCce
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSD-VVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~  147 (519)
                      +++.....++++|||+|||+|.+++.+++.+ .+|+++|+| .+++.|+++++.+++.+ +++++.+|+.+ .++.  ++
T Consensus        44 Li~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~--~~  119 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKD--RK  119 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTT--SC
T ss_pred             HHHhCCcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhcc--CC
Confidence            3344567789999999999999999999875 499999999 69999999999999875 69999999876 4444  79


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ||+|+++.+.+..  ....+.+++.+.++|||||.++.
T Consensus       120 fD~Ii~~~p~~~~--~~~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_         120 YNKIITNPPIRAG--KEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             EEEEEECCCSTTC--HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ceEEEEcccEEec--chhhhhHHHHHHHhcCcCcEEEE
Confidence            9999998875432  34467789999999999998864

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.54  E-value=9e-15  Score=137.54  Aligned_cols=107  Identities=21%  Similarity=0.295  Sum_probs=90.2

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc---CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS---GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~---g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ..++.+|||||||+|..+..+++.   +..+|+|+|+| +|++.|+++++..+...++++..+|+.++  +.  +++|+|
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~--~~--~~~d~i  112 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV--EI--KNASMV  112 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC--CC--CSEEEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc--cc--ccceee
Confidence            567889999999999999998874   44599999999 69999999999888888899999888754  33  578999


Q ss_pred             EEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ++..+.+++. ......+++.+++.|||||.++...
T Consensus       113 ~~~~~l~~~~-~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         113 ILNFTLQFLP-PEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEESCGGGSC-GGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeeeccccC-hhhHHHHHHHHHHhCCCCceeeccc
Confidence            9987776654 3467789999999999999998653

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=6.7e-15  Score=140.60  Aligned_cols=99  Identities=24%  Similarity=0.464  Sum_probs=83.9

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..+|++|||+|||+|.+++.+++.|+ +|+|+|+| .|++.|+++++.|++.  ++++++|+.+. ++.  ++||+|+++
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~-~~~--~~fD~V~an  191 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-LPF--GPFDLLVAN  191 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-GGG--CCEEEEEEE
T ss_pred             cCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCc--eeEEecccccc-ccc--cccchhhhc
Confidence            46899999999999999999999886 89999999 6999999999999986  47888988763 444  799999997


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ...      ..+..++..+.+.|||||+++.+
T Consensus       192 i~~------~~l~~l~~~~~~~LkpGG~lilS  217 (254)
T d2nxca1         192 LYA------ELHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             CCH------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccc------ccHHHHHHHHHHhcCCCcEEEEE
Confidence            542      23566788888999999999864

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.53  E-value=3.4e-15  Score=136.61  Aligned_cols=110  Identities=15%  Similarity=0.046  Sum_probs=86.8

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC-----------CCcEEEEEceeeEeec
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL-----------SDVVTILKGKVEEVEL  141 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~-----------~~~i~~~~~d~~~~~~  141 (519)
                      ..+.+|.+|||+|||+|..+..+|++|. +|+|+|+| .|++.|+++++..+.           ...++++.+|+.++..
T Consensus        16 l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~   94 (201)
T d1pjza_          16 LNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA   94 (201)
T ss_dssp             HCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred             cCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence            4678999999999999999999999987 99999999 699999998865432           1224677777776532


Q ss_pred             CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      .. ...||+|++..+.+++.. .....+++.+.++|||||.++..
T Consensus        95 ~~-~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~  137 (201)
T d1pjza_          95 RD-IGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLI  137 (201)
T ss_dssp             HH-HHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             cc-ccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEE
Confidence            21 167999999887666544 45677889999999999988744

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.52  E-value=9.8e-15  Score=128.85  Aligned_cols=108  Identities=17%  Similarity=0.201  Sum_probs=88.7

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-ecCCCCceeeEEEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-ELPFGIQKVDIIIS  153 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~D~Ivs  153 (519)
                      ..+|++|||+|||+|.+++.++.+|+++|+++|.+ ++++.++++++.+++.++++++++|+.+. ....  ++||+|++
T Consensus        12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~--~~fDiIf~   89 (152)
T d2esra1          12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT--GRFDLVFL   89 (152)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC--SCEEEEEE
T ss_pred             hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccc--cccceeEe
Confidence            45799999999999999999999999999999999 69999999999999999999999999874 3333  78999999


Q ss_pred             eccccccccchhHHHHHHHH--hcccCcCeEEEccCCc
Q psy14674        154 EWMGYCLFYESMLDTVLYAR--DKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~--~r~LkpgG~lip~~~~  189 (519)
                      ++...    .......+..+  .++|+|||.++.+...
T Consensus        90 DPPy~----~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          90 DPPYA----KETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             CCSSH----HHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             chhhc----cchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            87632    22333344433  3689999999987554

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.50  E-value=3e-14  Score=138.68  Aligned_cols=107  Identities=21%  Similarity=0.296  Sum_probs=89.3

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ..+.++.+|||||||+|.++..+++. + ..+|+|+|+| .|++.|+++.+..+.  +++++++|+.+++++   ++||+
T Consensus        23 ~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~~~---~~fD~   97 (281)
T d2gh1a1          23 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELN---DKYDI   97 (281)
T ss_dssp             SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCS---SCEEE
T ss_pred             hccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccccc---CCceE
Confidence            35677889999999999999999875 3 3589999999 699999999988775  489999999987665   68999


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA  188 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~  188 (519)
                      |+|..+.+++   .....+++++.+.|||||.++....
T Consensus        98 v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1          98 AICHAFLLHM---TTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             EEEESCGGGC---SSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEehhhhcC---CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            9998875555   3467789999999999999885443

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.49  E-value=2.2e-14  Score=137.50  Aligned_cols=110  Identities=20%  Similarity=0.189  Sum_probs=89.8

Q ss_pred             HhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674         71 YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD  149 (519)
Q Consensus        71 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D  149 (519)
                      +......++.+|||+|||+|.++..++..+..+|+|||+| .|++.|+++....   .+++++++++++++++.  ++||
T Consensus        86 l~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~--~~fD  160 (254)
T d1xtpa_          86 IASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPP--NTYD  160 (254)
T ss_dssp             HHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCS--SCEE
T ss_pred             HhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCC--Cccc
Confidence            3445556778999999999999988776656699999999 6999999876543   34899999999887765  8999


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +|++.++.+++..+ .+..++..+.++|||||.++..
T Consensus       161 ~I~~~~vl~hl~d~-d~~~~l~~~~~~LkpgG~iii~  196 (254)
T d1xtpa_         161 LIVIQWTAIYLTDA-DFVKFFKHCQQALTPNGYIFFK  196 (254)
T ss_dssp             EEEEESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEeeccccccchh-hhHHHHHHHHHhcCCCcEEEEE
Confidence            99999987776543 4667899999999999999854

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.47  E-value=7.5e-14  Score=131.19  Aligned_cols=100  Identities=21%  Similarity=0.305  Sum_probs=81.9

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..++++|||||||+|.++..+++.|. +|+|||+| ++++.|+++..     +++++++++++++.++   ++||+|++.
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~~---~~fD~I~~~   88 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQLP---RRYDNIVLT   88 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCCS---SCEEEEEEE
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc-----cccccccccccccccc---ccccccccc
Confidence            34677899999999999999999876 89999999 69999987642     3599999999887655   799999998


Q ss_pred             ccccccccchhHHHHHHHHh-cccCcCeEEEccC
Q psy14674        155 WMGYCLFYESMLDTVLYARD-KWLATNGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~-r~LkpgG~lip~~  187 (519)
                      .+.+++   .....++.++. ++|+|||.++...
T Consensus        89 ~vleh~---~d~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          89 HVLEHI---DDPVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             SCGGGC---SSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ceeEec---CCHHHHHHHHHHHhcCCCceEEEEe
Confidence            776555   34566677776 8999999998554

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.46  E-value=2.5e-14  Score=132.55  Aligned_cols=95  Identities=23%  Similarity=0.251  Sum_probs=78.2

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      .++.+|||||||+|.++..++     +++|||+| .|++.|+++        +++++++|+++++++.  ++||+|+|..
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~--~~fD~I~~~~   99 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKD--ESFDFALMVT   99 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCT--TCEEEEEEES
T ss_pred             CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--------cccccccccccccccc--cccccccccc
Confidence            456689999999999887763     57899999 699998863        3799999999887775  8999999988


Q ss_pred             cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.+++   ..+..++.++.++|+|||.++.....
T Consensus       100 ~l~h~---~d~~~~l~~~~~~L~pgG~l~i~~~~  130 (208)
T d1vlma_         100 TICFV---DDPERALKEAYRILKKGGYLIVGIVD  130 (208)
T ss_dssp             CGGGS---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ccccc---cccccchhhhhhcCCCCceEEEEecC
Confidence            86655   35778899999999999999865443

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.5e-14  Score=141.52  Aligned_cols=112  Identities=21%  Similarity=0.217  Sum_probs=82.2

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCC---cEEEEEceeeEe--ecCCCCceee
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSD---VVTILKGKVEEV--ELPFGIQKVD  149 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~---~i~~~~~d~~~~--~~~~~~~~~D  149 (519)
                      ..++++|||+|||+|.++..+++.|. +|+|+|+| +|++.|+++....+...   +..+...++..+  .++. .++||
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fd  131 (292)
T d1xvaa_          54 QHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA-GDGFD  131 (292)
T ss_dssp             HTTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC-TTCEE
T ss_pred             hcCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCC-CCCce
Confidence            34678999999999999999999987 89999999 69999999988776542   233444444322  1221 16899


Q ss_pred             EEEEec--cccccc---cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        150 IIISEW--MGYCLF---YESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       150 ~Ivs~~--~~~~l~---~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +|+|..  +.|...   ....+..+++++.++|||||.++.+..+
T Consensus       132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence            999843  333322   2245778899999999999999986544

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.44  E-value=8.7e-14  Score=132.21  Aligned_cols=110  Identities=13%  Similarity=0.102  Sum_probs=87.6

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI  145 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  145 (519)
                      .|+....+.+|.+|||+|||+|.++..+|++  +..+|+++|.+ ++++.|+++++.++..+++++.++|+.+. +++  
T Consensus        76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~--  152 (250)
T d1yb2a1          76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISD--  152 (250)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCS--
T ss_pred             HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-ccc--
Confidence            4555678899999999999999999999986  45699999999 69999999999887777899999999875 444  


Q ss_pred             ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.||.|+.+..        ....++..+.+.|||||+++....+
T Consensus       153 ~~fD~V~ld~p--------~p~~~l~~~~~~LKpGG~lv~~~P~  188 (250)
T d1yb2a1         153 QMYDAVIADIP--------DPWNHVQKIASMMKPGSVATFYLPN  188 (250)
T ss_dssp             CCEEEEEECCS--------CGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             ceeeeeeecCC--------chHHHHHHHHHhcCCCceEEEEeCC
Confidence            78999987643        2234577788999999999854443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.4e-14  Score=131.22  Aligned_cols=111  Identities=14%  Similarity=0.005  Sum_probs=88.7

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCC----------------CCCcEEEEEcee
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNN----------------LSDVVTILKGKV  136 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~----------------~~~~i~~~~~d~  136 (519)
                      ..+.++.+|||+|||+|..+..+|+.|. +|+|||+| .+++.|+++....+                ...+++++++|+
T Consensus        41 l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~  119 (229)
T d2bzga1          41 LKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI  119 (229)
T ss_dssp             HTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred             cCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence            3467889999999999999999999998 99999999 59999988765321                124689999998


Q ss_pred             eEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        137 EEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       137 ~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      .++... ..+.||+|++..+.+++.. ...+.++..+.++|||||.++...
T Consensus       120 ~~l~~~-~~~~fd~i~~~~~l~~~~~-~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         120 FDLPRT-NIGKFDMIWDRGALVAINP-GDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             GGGGGS-CCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhcccc-ccCceeEEEEEEEEEeccc-hhhHHHHHHHHhhcCCcceEEEEE
Confidence            876432 2278999999877666654 456788999999999999877443

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.44  E-value=2.3e-13  Score=130.16  Aligned_cols=112  Identities=22%  Similarity=0.242  Sum_probs=92.1

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      +.....+.+.++|||||||+|.++..++++ +..+++++|++++++.|++++...++.++++++.+|+.+ ..+   .+|
T Consensus        72 ~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~~---~~~  147 (253)
T d1tw3a2          72 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP---RKA  147 (253)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS---SCE
T ss_pred             HHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchh-hcc---cch
Confidence            334445667789999999999999988877 456899999988999999999999999999999999865 334   579


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      |+|++..+.|++..+ ....+++++++.|||||.++..
T Consensus       148 D~v~~~~vlh~~~d~-~~~~~L~~~~~~LkPGG~l~i~  184 (253)
T d1tw3a2         148 DAIILSFVLLNWPDH-DAVRILTRCAEALEPGGRILIH  184 (253)
T ss_dssp             EEEEEESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEE
T ss_pred             hheeeccccccCCch-hhHHHHHHHHHhcCCCcEEEEE
Confidence            999998887765433 4557899999999999988754

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.7e-14  Score=131.16  Aligned_cols=106  Identities=22%  Similarity=0.243  Sum_probs=85.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Ivs  153 (519)
                      .+|.+|||||||+|..+..+++.+..+|+|||+| .|++.|+++.+..+  .++.++.+++...  .++.  ++||.|+.
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~fD~i~f  127 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPD--GHFDGILY  127 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCT--TCEEEEEE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--ccccccccccccccccccc--ccccceee
Confidence            5788999999999999999998876699999999 69999999987755  3478888887765  3444  89999997


Q ss_pred             ecc--ccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        154 EWM--GYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       154 ~~~--~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +.+  .+.+.+......+++++.|+|||||+++..
T Consensus       128 D~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         128 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            654  233444456778899999999999999754

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.41  E-value=2e-13  Score=130.49  Aligned_cols=111  Identities=26%  Similarity=0.350  Sum_probs=90.6

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHC--CCCCcEEEEEceeeEeecCC
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKN--NLSDVVTILKGKVEEVELPF  143 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~--~~~~~i~~~~~d~~~~~~~~  143 (519)
                      .|+....+.+|.+|||+|||+|.+++.+|++  +..+|+++|++ ++++.|+++++..  +..+++.++++|+.+..+++
T Consensus        87 ~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~  166 (264)
T d1i9ga_          87 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPD  166 (264)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCT
T ss_pred             HHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccC
Confidence            4555678999999999999999999999987  35699999999 6999999998753  44567999999998877776


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                        +.||.|+.+..        ....++..+.+.|||||.++....+
T Consensus       167 --~~fDaV~ldlp--------~P~~~l~~~~~~LkpGG~lv~~~P~  202 (264)
T d1i9ga_         167 --GSVDRAVLDML--------APWEVLDAVSRLLVAGGVLMVYVAT  202 (264)
T ss_dssp             --TCEEEEEEESS--------CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             --CCcceEEEecC--------CHHHHHHHHHhccCCCCEEEEEeCc
Confidence              89999987542        2345577788999999998854444

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.41  E-value=1.6e-13  Score=136.00  Aligned_cols=114  Identities=28%  Similarity=0.294  Sum_probs=93.4

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDIII  152 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~Iv  152 (519)
                      ..+|++|||+|||+|.+++.+++.|+++|+++|+| .+++.|+++++.||+.++++++++|+.+..  ++...++||+|+
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi  222 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  222 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence            46799999999999999999999999999999999 699999999999999989999999987641  222227899999


Q ss_pred             Eeccccccccc------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYE------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +++........      .....++....++|+|||+++...++
T Consensus       223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            98864332211      23455777788999999999988777

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.40  E-value=5.7e-13  Score=123.98  Aligned_cols=104  Identities=25%  Similarity=0.241  Sum_probs=83.1

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      +++...+.+|.+|||||||+|.++..+|+. | ..+|+++|++ ++++.|+++++..++.+ +.++++|..+.....  +
T Consensus        67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n-~~~~~~d~~~~~~~~--~  143 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVPEF--S  143 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGG--C
T ss_pred             HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc-cccccCchHHccccc--c
Confidence            345577899999999999999999999886 3 4589999999 69999999999998865 888899987754443  7


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      +||+|++....+..     .+    ++.+.|||||+++.
T Consensus       144 ~fD~I~~~~~~~~~-----p~----~l~~~LkpGG~lv~  173 (213)
T d1dl5a1         144 PYDVIFVTVGVDEV-----PE----TWFTQLKEGGRVIV  173 (213)
T ss_dssp             CEEEEEECSBBSCC-----CH----HHHHHEEEEEEEEE
T ss_pred             chhhhhhhccHHHh-----HH----HHHHhcCCCcEEEE
Confidence            89999997653322     22    33467999999874

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.8e-13  Score=128.36  Aligned_cols=113  Identities=19%  Similarity=0.180  Sum_probs=81.1

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCc-------------------------
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDV-------------------------  128 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~-------------------------  128 (519)
                      ...+|++|||||||+|.++..++..+..+|+|+|+| .|++.|+++++..+....                         
T Consensus        48 ~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (257)
T d2a14a1          48 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  127 (257)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence            456788999999999999888887777789999999 699999999876654210                         


Q ss_pred             ---EE-EEEceee--EeecCCCCceeeEEEEeccccccc-cchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        129 ---VT-ILKGKVE--EVELPFGIQKVDIIISEWMGYCLF-YESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       129 ---i~-~~~~d~~--~~~~~~~~~~~D~Ivs~~~~~~l~-~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                         +. ....+..  ....+...++||+|++..+.+++. .+..+..+++.+.++|||||.++...
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~  193 (257)
T d2a14a1         128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  193 (257)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEE
Confidence               00 1111111  111122237899999977765553 33467788999999999999998644

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.34  E-value=1.8e-12  Score=120.02  Aligned_cols=106  Identities=18%  Similarity=0.140  Sum_probs=83.7

Q ss_pred             cCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC-CCceee
Q psy14674         73 NKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF-GIQKVD  149 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~D  149 (519)
                      ...+.+|.+|||+|||+|..+..+++. +.++|+|+|+| +|++.|+++++..+   ++.++.+|+.....+. ....+|
T Consensus        51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~~~~~~vd  127 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYSGIVEKVD  127 (209)
T ss_dssp             CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTTTTCCCEE
T ss_pred             cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccccccceEE
Confidence            357889999999999999999999986 66799999999 69999999988754   5899999988764432 124677


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +|+++.     .+......++.++.++|||||.++..
T Consensus       128 ~v~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~  159 (209)
T d1nt2a_         128 LIYQDI-----AQKNQIEILKANAEFFLKEKGEVVIM  159 (209)
T ss_dssp             EEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEecc-----cChhhHHHHHHHHHHHhccCCeEEEE
Confidence            776542     23345677889999999999998754

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.34  E-value=3.1e-12  Score=122.37  Aligned_cols=112  Identities=21%  Similarity=0.164  Sum_probs=92.1

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      ++....+...++|||||||+|.++..++++ +..+++++|++++++.|+++++..++.++++++.+|..+ ++|   .++
T Consensus        73 ~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p---~~~  148 (256)
T d1qzza2          73 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLP---VTA  148 (256)
T ss_dssp             HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS---CCE
T ss_pred             HHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc---ccc
Confidence            444445566789999999999999998887 456999999988999999999999999999999999875 455   569


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      |+|++..+.|.+.. .....+++++++.|||||.++..
T Consensus       149 D~v~~~~vLh~~~d-~~~~~lL~~i~~~LkpgG~llI~  185 (256)
T d1qzza2         149 DVVLLSFVLLNWSD-EDALTILRGCVRALEPGGRLLVL  185 (256)
T ss_dssp             EEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhccccccccCc-HHHHHHHHHHHhhcCCcceeEEE
Confidence            99999888666543 34567799999999999987743

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.6e-12  Score=124.87  Aligned_cols=135  Identities=16%  Similarity=0.173  Sum_probs=101.5

Q ss_pred             ccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCC
Q psy14674         50 FGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSD  127 (519)
Q Consensus        50 ~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~  127 (519)
                      +......+-.+..++...+.++... ...+.+|||+|||+|.+++.++.. +..+|+|+|+| .+++.|++|++.+++. 
T Consensus        81 ~~v~~~VlIPRpeTE~lv~~~l~~~-~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~-  158 (274)
T d2b3ta1          81 LFVSPATLIPRPDTECLVEQALARL-PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-  158 (274)
T ss_dssp             EECCTTSCCCCTTHHHHHHHHHHHS-CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-
T ss_pred             EEEeccccccccchhhhhhhHhhhh-cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc-
Confidence            3445555666666776666554432 345678999999999999988775 66799999999 6999999999999985 


Q ss_pred             cEEEEEceeeEeecCCCCceeeEEEEeccccc----------cccc------------hhHHHHHHHHhcccCcCeEEEc
Q psy14674        128 VVTILKGKVEEVELPFGIQKVDIIISEWMGYC----------LFYE------------SMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       128 ~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~----------l~~e------------~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      +|+++++|+.+ .++.  ++||+|+|++...-          ..+|            ..+..++....++|+|||.++.
T Consensus       159 ~v~~~~~d~~~-~~~~--~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l  235 (274)
T d2b3ta1         159 NIHILQSDWFS-ALAG--QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL  235 (274)
T ss_dssp             SEEEECCSTTG-GGTT--CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             cceeeeccccc-ccCC--CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence            49999999876 3454  79999999875211          1111            2355678888999999999998


Q ss_pred             cCCc
Q psy14674        186 DKAS  189 (519)
Q Consensus       186 ~~~~  189 (519)
                      +...
T Consensus       236 Eig~  239 (274)
T d2b3ta1         236 EHGW  239 (274)
T ss_dssp             ECCS
T ss_pred             EECc
Confidence            7554

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.33  E-value=1.2e-12  Score=125.70  Aligned_cols=108  Identities=18%  Similarity=0.151  Sum_probs=88.6

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI  145 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  145 (519)
                      .|.....+.+|.+|||+|||+|.++..+|++  +.++|+++|.+ ++++.|+++++..++.+++.+..+|+... ++.  
T Consensus        94 ~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~-~~~--  170 (266)
T d1o54a_          94 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDE--  170 (266)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSC--
T ss_pred             HHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc-ccc--
Confidence            4555678999999999999999999999986  35699999999 69999999999999988899999887542 333  


Q ss_pred             ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ..+|.|+....        ....++..+.++|||||.++...
T Consensus       171 ~~~D~V~~d~p--------~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         171 KDVDALFLDVP--------DPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             CSEEEEEECCS--------CGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             cceeeeEecCC--------CHHHHHHHHHhhcCCCCEEEEEe
Confidence            67999976432        34556788889999999998543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.32  E-value=7e-13  Score=126.96  Aligned_cols=99  Identities=18%  Similarity=0.196  Sum_probs=82.8

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ..+|.+|||+|||+|.+++.+|+.|+++|+|+|++ .+++.|+++++.|++.++++++++|+.++...   +.||.|+.+
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~---~~~D~Ii~~  181 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE---NIADRILMG  181 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC---SCEEEEEEC
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC---CCCCEEEEC
Confidence            46899999999999999999999988899999999 59999999999999999999999999876433   789999987


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ....   ....    +....++|++||.+.
T Consensus       182 ~p~~---~~~~----l~~a~~~l~~gG~lh  204 (260)
T d2frna1         182 YVVR---THEF----IPKALSIAKDGAIIH  204 (260)
T ss_dssp             CCSS---GGGG----HHHHHHHEEEEEEEE
T ss_pred             CCCc---hHHH----HHHHHhhcCCCCEEE
Confidence            6522   2222    444457899999874

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=9.4e-13  Score=123.37  Aligned_cols=100  Identities=26%  Similarity=0.298  Sum_probs=79.8

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCC----CcEEEEEceeeEeecCCCCce
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLS----DVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .+.+|.+|||||||+|.++..+|+. | ..+|+++|.+ ++++.|++++++.++.    +++.++.+|......+.  ++
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~--~~  150 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEE--AP  150 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGG--CC
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchh--hh
Confidence            6789999999999999999888876 3 5699999999 6999999999876653    46899999987654443  78


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ||+|++......+     .    .++.+.|||||+++.
T Consensus       151 fD~I~~~~~~~~i-----p----~~l~~~LkpGG~LV~  179 (224)
T d1i1na_         151 YDAIHVGAAAPVV-----P----QALIDQLKPGGRLIL  179 (224)
T ss_dssp             EEEEEECSBBSSC-----C----HHHHHTEEEEEEEEE
T ss_pred             hhhhhhhcchhhc-----C----HHHHhhcCCCcEEEE
Confidence            9999987653322     2    234578999999984

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=8.2e-13  Score=127.37  Aligned_cols=94  Identities=20%  Similarity=0.228  Sum_probs=76.3

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ..++.+|||||||+|.++..+++.+ ..+++|+|+| .|++.|+++.      .+++++++|+.++++++  ++||+|++
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~--~sfD~v~~  153 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSD--TSMDAIIR  153 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCT--TCEEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCC--CCEEEEee
Confidence            4567899999999999999998874 4589999999 6999988753      24899999999888776  89999998


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ....++          +.++.|+|||||.++...
T Consensus       154 ~~~~~~----------~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         154 IYAPCK----------AEELARVVKPGGWVITAT  177 (268)
T ss_dssp             ESCCCC----------HHHHHHHEEEEEEEEEEE
T ss_pred             cCCHHH----------HHHHHHHhCCCcEEEEEe
Confidence            654221          356789999999998554

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.31  E-value=1.6e-12  Score=127.97  Aligned_cols=115  Identities=18%  Similarity=0.135  Sum_probs=92.8

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCC-CcEEEEEceeeEe--ecCCCCceeeE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS-DVVTILKGKVEEV--ELPFGIQKVDI  150 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~-~~i~~~~~d~~~~--~~~~~~~~~D~  150 (519)
                      .+.+|++|||++||+|.+++.++..|+++|++||+| .+++.|+++++.|++. ++++++++|+.+.  .+....++||+
T Consensus       141 ~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~  220 (317)
T d2b78a2         141 GSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI  220 (317)
T ss_dssp             TTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             HhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence            456799999999999999999999999999999999 6999999999999995 5799999999764  11112268999


Q ss_pred             EEEecccccc------ccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCL------FYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l------~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ||+++....-      ........++....++|+|||+++..+++
T Consensus       221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            9998763221      11234566788888999999999988877

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.30  E-value=4e-12  Score=117.10  Aligned_cols=106  Identities=16%  Similarity=0.188  Sum_probs=83.8

Q ss_pred             CCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEEEEe
Q psy14674         79 GKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDIIISE  154 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~Ivs~  154 (519)
                      +..|||||||+|..+..+|+. +...++|||++ +++..|.++++..++.+ +.++++|+..+.  +++  +.+|.|+..
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~N-v~~~~~Da~~l~~~~~~--~~~d~v~i~  106 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDVFEP--GEVKRVYLN  106 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHHCCT--TSCCEEEEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccC-chhcccchhhhhcccCc--hhhhccccc
Confidence            458999999999988888876 56699999999 79999999999999964 999999998763  554  789999876


Q ss_pred             ccccccccch-----hHHHHHHHHhcccCcCeEEEccC
Q psy14674        155 WMGYCLFYES-----MLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l~~e~-----~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ..........     ....+++.+.++|||||.++..+
T Consensus       107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            5433222111     12468899999999999987643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.4e-12  Score=125.57  Aligned_cols=111  Identities=19%  Similarity=0.219  Sum_probs=83.7

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHC----------CCCCcEEEEEce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKN----------NLSDVVTILKGK  135 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~----------~~~~~i~~~~~d  135 (519)
                      .|+....+.+|.+|||+|||+|.+++.+|++  +.++|+++|++ ++++.|+++++..          +..+++++.++|
T Consensus        89 ~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d  168 (324)
T d2b25a1          89 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  168 (324)
T ss_dssp             HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence            3445578899999999999999999999987  35699999999 6999999998753          445779999999


Q ss_pred             eeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        136 VEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       136 ~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      +.+.........||.|+.+..    .    ...++..+.+.|||||+++.-.
T Consensus       169 i~~~~~~~~~~~fD~V~LD~p----~----P~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         169 ISGATEDIKSLTFDAVALDML----N----PHVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             TTCCC-------EEEEEECSS----S----TTTTHHHHGGGEEEEEEEEEEE
T ss_pred             hhhcccccCCCCcceEeecCc----C----HHHHHHHHHHhccCCCEEEEEe
Confidence            876532222268999987542    1    2335777889999999988443

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=1.7e-12  Score=128.14  Aligned_cols=111  Identities=21%  Similarity=0.264  Sum_probs=88.5

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Ivs  153 (519)
                      .+|++|||++||+|.+++.+|+ |+++|+++|.| .+++.|+++++.||+.+ ++++++|+.++  .++...++||+|++
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~-~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCC-cceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            3689999999999999998886 56699999999 69999999999999964 99999998764  12222278999999


Q ss_pred             ecccccccc------chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        154 EWMGYCLFY------ESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~~------e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ++.......      ......++..+.++|+|||.++..+++
T Consensus       222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            876433222      233456777888999999999988777

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.27  E-value=2e-12  Score=120.69  Aligned_cols=101  Identities=20%  Similarity=0.280  Sum_probs=78.2

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      +++...+.++.+|||||||+|.++..+|+.+ .+|+++|.+ ++++.|+++....   +++.++.+|........  ++|
T Consensus        62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~--~pf  135 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEE--KPY  135 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGG--CCE
T ss_pred             HHHHhhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhh--hhH
Confidence            4455678999999999999999999999985 599999999 6999999887643   46999999986643332  789


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      |+|++......     ..+    .+.+.|||||+++.
T Consensus       136 D~Iiv~~a~~~-----ip~----~l~~qLk~GGrLV~  163 (224)
T d1vbfa_         136 DRVVVWATAPT-----LLC----KPYEQLKEGGIMIL  163 (224)
T ss_dssp             EEEEESSBBSS-----CCH----HHHHTEEEEEEEEE
T ss_pred             HHHHhhcchhh-----hhH----HHHHhcCCCCEEEE
Confidence            99998654222     222    33468999999884

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.27  E-value=4e-12  Score=115.13  Aligned_cols=111  Identities=16%  Similarity=0.196  Sum_probs=88.0

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDII  151 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~I  151 (519)
                      ....|.+|||++||+|.+++.++.+|+++|++||.+ ++++.++++++.++..++++++++|+.+.  .+.....+||+|
T Consensus        38 ~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlI  117 (182)
T d2fhpa1          38 PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV  117 (182)
T ss_dssp             SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             HhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceE
Confidence            346799999999999999999999999999999999 69999999999999988999999998764  111112689999


Q ss_pred             EEeccccccccchhHHHHHHHH--hcccCcCeEEEccCCc
Q psy14674        152 ISEWMGYCLFYESMLDTVLYAR--DKWLATNGLLFPDKAS  189 (519)
Q Consensus       152 vs~~~~~~l~~e~~l~~~l~~~--~r~LkpgG~lip~~~~  189 (519)
                      +.++...    ......++..+  ..+|+++|+++.+...
T Consensus       118 flDPPY~----~~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         118 LLDPPYA----KQEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             EECCCGG----GCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             Eechhhh----hhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            9998632    22234444444  3589999999876543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.26  E-value=5.2e-12  Score=118.62  Aligned_cols=107  Identities=10%  Similarity=0.054  Sum_probs=79.8

Q ss_pred             cCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         73 NKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ...+.+|.+|||||||+|..+..+|+. +...|+|||+| .|++.|++++...+   ++..+.++........ +..+|+
T Consensus        69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~-~~~~~v  144 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE---NIIPILGDANKPQEYA-NIVEKV  144 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT---TEEEEECCTTCGGGGT-TTCCCE
T ss_pred             hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc---ccceEEEeeccCcccc-ccccee
Confidence            456889999999999999999999987 45699999999 69999998876543   4778888877653221 144555


Q ss_pred             EEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +++...   +.+....+.++.++.++|||||.++..
T Consensus       145 ~~i~~~---~~~~~~~~~~l~~~~r~LKpgG~~~i~  177 (230)
T d1g8sa_         145 DVIYED---VAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEEC---CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEeecc---ccchHHHHHHHHHHHHhcccCceEEEE
Confidence            443222   233355778889999999999988744

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=2.3e-12  Score=115.62  Aligned_cols=108  Identities=18%  Similarity=0.126  Sum_probs=80.7

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIII  152 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Iv  152 (519)
                      +.+|.+|||+|||+|.+++.++..|+ +|+++|.+ .+++.|+++++.+++.+++....+|....  ....  ++||+|+
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~--~~fD~If  115 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQG--ERFTVAF  115 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTT--CCEEEEE
T ss_pred             ccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccC--CccceeE
Confidence            56788999999999999999999988 89999999 69999999999999987666655553211  2232  6899999


Q ss_pred             EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +++.... .....+..++.  ..+|+|||+++.+...
T Consensus       116 ~DPPY~~-~~~~~l~~l~~--~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         116 MAPPYAM-DLAALFGELLA--SGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             ECCCTTS-CTTHHHHHHHH--HTCEEEEEEEEEEEET
T ss_pred             Ecccccc-CHHHHHHHHHH--cCCcCCCeEEEEEecC
Confidence            9986322 22233333333  3689999999865433

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3e-12  Score=126.95  Aligned_cols=114  Identities=17%  Similarity=0.242  Sum_probs=85.9

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHC-------CC-CCcEEEEEceeeE
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKN-------NL-SDVVTILKGKVEE  138 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~-------~~-~~~i~~~~~d~~~  138 (519)
                      .++....+.++.+|||||||+|.++..+|+. |+++++|||+| .+++.|+++.+..       |. ..+++++++|+.+
T Consensus       142 ~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~  221 (328)
T d1nw3a_         142 QMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS  221 (328)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS
T ss_pred             HHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc
Confidence            3455677899999999999999999988765 77799999999 6999988776542       22 2459999999987


Q ss_pred             eecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        139 VELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       139 ~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      .+..+....+|+|+++...    +...+...+.++.+.|||||.+|..
T Consensus       222 ~~~~~~~~~advi~~~~~~----f~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         222 EEWRERIANTSVIFVNNFA----FGPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             HHHHHHHHHCSEEEECCTT----TCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cccccccCcceEEEEccee----cchHHHHHHHHHHHhCCCCcEEEEe
Confidence            6554311235788876542    2245667788889999999999854

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.23  E-value=4.1e-12  Score=123.58  Aligned_cols=109  Identities=20%  Similarity=0.116  Sum_probs=86.5

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCC-cEEEEEceeeEee--cCCCCceeeEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSD-VVTILKGKVEEVE--LPFGIQKVDII  151 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~-~i~~~~~d~~~~~--~~~~~~~~D~I  151 (519)
                      ..++++|||++||+|.+++.+++.|+ +|++||.| .+++.|++|++.|++.+ +++++++|+.++-  .....++||+|
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I  208 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  208 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence            45788999999999999999999888 89999999 69999999999999975 6999999997651  11112689999


Q ss_pred             EEeccccccc-------cchhHHHHHHHHhcccCcCeEEEc
Q psy14674        152 ISEWMGYCLF-------YESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       152 vs~~~~~~l~-------~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      |+++..+...       .+..+..++..+.++|+|||.++.
T Consensus       209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll  249 (309)
T d2igta1         209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLV  249 (309)
T ss_dssp             EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEE
T ss_pred             EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence            9987643221       234566677888899999986543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.20  E-value=1.9e-11  Score=114.24  Aligned_cols=106  Identities=21%  Similarity=0.308  Sum_probs=82.7

Q ss_pred             cCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCcee
Q psy14674         73 NKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKV  148 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~  148 (519)
                      ...+.+|.+|||+|||+|..+..+|+. | ..+|+|+|+| .|++.|+++++..+   ++..+..|..... .+.....+
T Consensus        68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~~~~~~~~v  144 (227)
T d1g8aa_          68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEEYRALVPKV  144 (227)
T ss_dssp             CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGGGTTTCCCE
T ss_pred             ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCcccccccccce
Confidence            456889999999999999999999987 3 5699999999 69999999876543   3777888876542 22223689


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      |+|+++..     +......++.++.+.|||||.++..
T Consensus       145 D~i~~d~~-----~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         145 DVIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEcc-----ccchHHHHHHHHHHhcccCCeEEEE
Confidence            99987543     2345677899999999999998854

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.4e-11  Score=119.24  Aligned_cols=107  Identities=23%  Similarity=0.143  Sum_probs=75.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc------C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEE--EEEceeeEe----ecC
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS------G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVT--ILKGKVEEV----ELP  142 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~------g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~--~~~~d~~~~----~~~  142 (519)
                      .++.+|||||||+|.++..+++.      + ..+++|||+| .|++.|+++++.......+.  +...+++++    ..+
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK  118 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence            34448999999999987766543      1 2268999999 69999999987644333343  344444432    112


Q ss_pred             CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ...++||+|+|..+.+++   ..+..++..+.++|+|||.++..
T Consensus       119 ~~~~~fD~I~~~~~l~~~---~d~~~~l~~l~~~LkpgG~l~i~  159 (280)
T d1jqea_         119 KELQKWDFIHMIQMLYYV---KDIPATLKFFHSLLGTNAKMLII  159 (280)
T ss_dssp             SSCCCEEEEEEESCGGGC---SCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCCceeEEEEccceecC---CCHHHHHHHHHhhCCCCCEEEEE
Confidence            223799999997775544   45778899999999999988754

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.19  E-value=4e-11  Score=110.28  Aligned_cols=106  Identities=18%  Similarity=0.222  Sum_probs=83.2

Q ss_pred             CCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEEEEe
Q psy14674         79 GKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDIIISE  154 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~Ivs~  154 (519)
                      +..|||||||+|.++..+|+. +...++|+|++ .++..|.+++..+++++ +.++.+|+.++.  ++.  .++|.|++.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~N-i~~~~~da~~l~~~~~~--~~~~~i~i~  108 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDYFED--GEIDRLYLN  108 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGTSCT--TCCSEEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcccc-ceeeecCHHHHhhhccC--Cceehhccc
Confidence            458999999999988888876 67799999999 69999999999999975 999999998863  444  789999875


Q ss_pred             ccccccccc-----hhHHHHHHHHhcccCcCeEEEccC
Q psy14674        155 WMGYCLFYE-----SMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       155 ~~~~~l~~e-----~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ......-..     -.-..++..+.++|||||.++..+
T Consensus       109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            543221110     112577889999999999997644

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=1.7e-11  Score=110.99  Aligned_cols=106  Identities=15%  Similarity=0.165  Sum_probs=84.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      ..+.+|||++||+|.+++.++.+|+.+|++||.+ ++++.++++++.++..+ ++++.+|+.++. .....+||+|++++
T Consensus        42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~-~~ii~~d~~~~l-~~~~~~fDlIf~DP  119 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN-ARVVNSNAMSFL-AQKGTPHNIVFVDP  119 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCHHHHH-SSCCCCEEEEEECC
T ss_pred             cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccc-eeeeeecccccc-cccccccCEEEEcC
Confidence            3678999999999999999999999999999999 69999999999888755 899999987752 22237899999998


Q ss_pred             cccccccchhHHHHHHHH--hcccCcCeEEEccCC
Q psy14674        156 MGYCLFYESMLDTVLYAR--DKWLATNGLLFPDKA  188 (519)
Q Consensus       156 ~~~~l~~e~~l~~~l~~~--~r~LkpgG~lip~~~  188 (519)
                      ...    ....+.++..+  ..+|+++|+++.+..
T Consensus       120 PY~----~~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         120 PFR----RGLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             SSS----TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             ccc----cchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            632    22344444444  357999999997643

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.18  E-value=7.5e-12  Score=115.98  Aligned_cols=103  Identities=22%  Similarity=0.286  Sum_probs=82.1

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      +++...+.++.+|||||||+|.++..+|+. | .+|+++|.+ ++++.|+++++..++.+ +.++++|..+...+.  ++
T Consensus        70 ml~~L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~n-v~~~~gd~~~g~~~~--~p  145 (215)
T d1jg1a_          70 MLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGSKGFPPK--AP  145 (215)
T ss_dssp             HHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGG--CC
T ss_pred             HHHhhccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCce-eEEEECccccCCccc--Cc
Confidence            344567899999999999999999999976 5 479999999 69999999999999865 999999987754333  78


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ||.|++......     ....+    ...|+|||+++.
T Consensus       146 fD~Iiv~~a~~~-----ip~~l----~~qL~~gGrLv~  174 (215)
T d1jg1a_         146 YDVIIVTAGAPK-----IPEPL----IEQLKIGGKLII  174 (215)
T ss_dssp             EEEEEECSBBSS-----CCHHH----HHTEEEEEEEEE
T ss_pred             ceeEEeeccccc-----CCHHH----HHhcCCCCEEEE
Confidence            999998654222     22333    357999999984

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.1e-11  Score=116.95  Aligned_cols=113  Identities=14%  Similarity=0.083  Sum_probs=79.0

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCC-------------------------
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSD-------------------------  127 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~-------------------------  127 (519)
                      ....+|.+|||||||+|.+++..+..+..+|+|+|.| .|++.|++.+++.+..-                         
T Consensus        50 ~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  129 (263)
T d2g72a1          50 TGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ  129 (263)
T ss_dssp             TSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             CCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence            4566789999999999988876655556699999999 59999998875433110                         


Q ss_pred             ----cEEEEEceeeEee----cCCCCceeeEEEEeccccccc-cchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        128 ----VVTILKGKVEEVE----LPFGIQKVDIIISEWMGYCLF-YESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       128 ----~i~~~~~d~~~~~----~~~~~~~~D~Ivs~~~~~~l~-~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                          ...++..|+..-.    .+...++||+|++..+.+++. ....+..+++.+.++|||||.++..
T Consensus       130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~  197 (263)
T d2g72a1         130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI  197 (263)
T ss_dssp             HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                0123334443211    111126799999987766554 3345788899999999999998843

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.17  E-value=1.7e-11  Score=117.41  Aligned_cols=137  Identities=20%  Similarity=0.225  Sum_probs=98.3

Q ss_pred             ccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEE
Q psy14674         52 IHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVT  130 (519)
Q Consensus        52 ~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~  130 (519)
                      .....+-.+..++...+.++......+..+|||+|||+|.+++.+++.+..+|+|+|+| ++++.|++|++.+++.+++.
T Consensus        84 v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~  163 (271)
T d1nv8a_          84 VEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFF  163 (271)
T ss_dssp             CCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEE
T ss_pred             EecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeE
Confidence            44455555556666666554433333456899999999999998888877799999999 69999999999999999999


Q ss_pred             EEEceeeEeecCCCCceeeEEEEecccc--------ccccchh---------HHHHHHHHhcccCcCeEEEccCCc
Q psy14674        131 ILKGKVEEVELPFGIQKVDIIISEWMGY--------CLFYESM---------LDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       131 ~~~~d~~~~~~~~~~~~~D~Ivs~~~~~--------~l~~e~~---------l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +..+++.+. ++...++||+|||++..-        ...+|+.         +..+..-+.++|+|||.++.+...
T Consensus       164 i~~~~~~~~-~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~  238 (271)
T d1nv8a_         164 VRKGEFLEP-FKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE  238 (271)
T ss_dssp             EEESSTTGG-GGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred             Eeecccccc-cccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH
Confidence            999998764 222226899999987411        0112211         222333346789999999987765

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.12  E-value=9.6e-11  Score=107.54  Aligned_cols=77  Identities=32%  Similarity=0.380  Sum_probs=66.9

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII  152 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv  152 (519)
                      .....|++|||+|||+|.+++.++..|+.+|+|+|++ .+++.|+++++.++..  .+++.+|+.++  +   ++||+|+
T Consensus        42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~--~~~~~~d~~~~--~---~~fD~Vi  114 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGDVSEF--N---SRVDIVI  114 (201)
T ss_dssp             TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS--EEEEESCGGGC--C---CCCSEEE
T ss_pred             cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCC--ceEEECchhhh--C---CcCcEEE
Confidence            4556789999999999999999999998899999999 6999999999887764  78899988653  3   7899999


Q ss_pred             Eeccc
Q psy14674        153 SEWMG  157 (519)
Q Consensus       153 s~~~~  157 (519)
                      +++..
T Consensus       115 ~nPP~  119 (201)
T d1wy7a1         115 MNPPF  119 (201)
T ss_dssp             ECCCC
T ss_pred             EcCcc
Confidence            99863

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.11  E-value=3e-11  Score=110.09  Aligned_cols=71  Identities=28%  Similarity=0.326  Sum_probs=61.7

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS  153 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs  153 (519)
                      ....|++|||+|||+|.+++.++..|+++|+|+|++ .+++.|++++.      ++.++++|+.++  +   ++||+|++
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l--~---~~fD~Vi~  113 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI--S---GKYDTWIM  113 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC--C---CCEEEEEE
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhhc--C---CcceEEEe
Confidence            445799999999999999999999999899999999 69999998753      378999998763  4   78999999


Q ss_pred             ecc
Q psy14674        154 EWM  156 (519)
Q Consensus       154 ~~~  156 (519)
                      ++.
T Consensus       114 NPP  116 (197)
T d1ne2a_         114 NPP  116 (197)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            976

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=6.2e-11  Score=119.48  Aligned_cols=114  Identities=18%  Similarity=0.224  Sum_probs=79.1

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCC-------CC-CcEEE-EEceee
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNN-------LS-DVVTI-LKGKVE  137 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~-------~~-~~i~~-~~~d~~  137 (519)
                      .|+....+.+|++|||||||+|.+++.+|+. |.++|+|||+| .|++.|+++++..+       .. ..+.+ +.++..
T Consensus       207 ~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~  286 (406)
T d1u2za_         207 DVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV  286 (406)
T ss_dssp             HHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred             HHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence            3445678899999999999999999988865 77799999999 69999999886532       11 11222 233332


Q ss_pred             Eeec-CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        138 EVEL-PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       138 ~~~~-~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +.+. ......+|+|+.+..    .+...+...+.++.+.|||||.+|..
T Consensus       287 ~~~~~d~~~~~adVV~inn~----~f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         287 DNNRVAELIPQCDVILVNNF----LFDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             TCHHHHHHGGGCSEEEECCT----TCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             hccccccccccceEEEEecc----cCchHHHHHHHHHHHhcCCCcEEEEe
Confidence            2110 100135788877543    23355778889999999999998854

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.04  E-value=5.4e-11  Score=110.92  Aligned_cols=100  Identities=25%  Similarity=0.314  Sum_probs=75.4

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc----C---CCEEEEEech-HHHHHHHHHHHHCCCC----CcEEEEEceeeEeecC
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS----G---AARVIGIECS-NIVEYAKEIVDKNNLS----DVVTILKGKVEEVELP  142 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~----g---~~~V~gvD~s-~~~~~A~~~~~~~~~~----~~i~~~~~d~~~~~~~  142 (519)
                      .+.++.+|||||||+|+++..+++.    |   ..+|+++|.+ ++++.|++++...++.    .++.++++|..+...+
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~  156 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP  156 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence            6789999999999999998888775    2   2389999999 6999999887543221    3599999998875444


Q ss_pred             CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .  ++||.|++.......     .+    .+.+.|||||+++.
T Consensus       157 ~--~~fD~Iiv~~a~~~~-----p~----~l~~~Lk~gG~lV~  188 (223)
T d1r18a_         157 N--APYNAIHVGAAAPDT-----PT----ELINQLASGGRLIV  188 (223)
T ss_dssp             G--CSEEEEEECSCBSSC-----CH----HHHHTEEEEEEEEE
T ss_pred             c--cceeeEEEEeechhc-----hH----HHHHhcCCCcEEEE
Confidence            3  789999986652211     22    23478999999974

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=4.1e-10  Score=104.22  Aligned_cols=108  Identities=22%  Similarity=0.421  Sum_probs=83.5

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cC--CCCceee
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LP--FGIQKVD  149 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~--~~~~~~D  149 (519)
                      .++++|||+|||+|..++.+|++  ...+|+++|.+ ++++.|+++++..|+.++|+++.+|+.++-  +.  ...++||
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D  134 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  134 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence            46689999999999999999986  34699999999 699999999999999999999999998751  11  1126799


Q ss_pred             EEEEeccccccccchhH-HHHHHHHhcccCcCeEEEccCCc
Q psy14674        150 IIISEWMGYCLFYESML-DTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l-~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +|+.+.-     ++... ...+.+..++|+|||+++.+..-
T Consensus       135 ~ifiD~~-----~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl  170 (214)
T d2cl5a1         135 MVFLDHW-----KDRYLPDTLLLEKCGLLRKGTVLLADNVI  170 (214)
T ss_dssp             EEEECSC-----GGGHHHHHHHHHHTTCEEEEEEEEESCCC
T ss_pred             eeeeccc-----ccccccHHHHHHHhCccCCCcEEEEeCcC
Confidence            9987632     11111 12345556899999999988765

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.2e-09  Score=101.18  Aligned_cols=112  Identities=16%  Similarity=0.089  Sum_probs=88.9

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--c--CCCCcee
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--L--PFGIQKV  148 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~--~~~~~~~  148 (519)
                      ..+.++|||||||+|..++.+|++  ...+|+++|.+ +..+.|+++++..|+.++++++.+++.+.-  +  ....++|
T Consensus        57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f  136 (219)
T d2avda1          57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  136 (219)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence            456789999999999999999986  24699999999 699999999999999999999999986641  1  1112689


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFIC  193 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~  193 (519)
                      |+|+.+.-     . ......++.+.++|+|||+++.+..-|...
T Consensus       137 D~ifiD~d-----k-~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~  175 (219)
T d2avda1         137 DVAVVDAD-----K-ENCSAYYERCLQLLRPGGILAVLRVLWRGK  175 (219)
T ss_dssp             EEEEECSC-----S-TTHHHHHHHHHHHEEEEEEEEEECCSGGGG
T ss_pred             cEEEEeCC-----H-HHHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence            99987642     1 234445666779999999999998875443

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1e-09  Score=104.00  Aligned_cols=81  Identities=20%  Similarity=0.228  Sum_probs=65.7

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec----CCCCceeeEE
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL----PFGIQKVDII  151 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~D~I  151 (519)
                      +..++||+|||+|.+++.+++. +..+++|+|+| ++++.|+++++.|++.+++.+++.+....-+    ....++||+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            3469999999999999887775 45599999999 6999999999999999999999876554311    1123689999


Q ss_pred             EEecccc
Q psy14674        152 ISEWMGY  158 (519)
Q Consensus       152 vs~~~~~  158 (519)
                      +|++..+
T Consensus       141 vsNPPY~  147 (250)
T d2h00a1         141 MCNPPFF  147 (250)
T ss_dssp             EECCCCC
T ss_pred             EecCccc
Confidence            9998744

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.95  E-value=9.8e-10  Score=99.14  Aligned_cols=109  Identities=16%  Similarity=0.216  Sum_probs=84.2

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCC-cEEEEEceeeEe-ecCCCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSD-VVTILKGKVEEV-ELPFGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~-~i~~~~~d~~~~-~~~~~~~~~D~Ivs  153 (519)
                      ..+.+|||+.||||.+++.++.+|+.+|+.||.+ .+++..+++++..+..+ ...++..|+.+. .......+||+|+.
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            3678999999999999999999999999999999 79999999999988754 467777776553 22222257999999


Q ss_pred             eccccccccchhHHHHHHHH--hcccCcCeEEEccCCc
Q psy14674        154 EWMGYCLFYESMLDTVLYAR--DKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~--~r~LkpgG~lip~~~~  189 (519)
                      ++....    .....++..+  ..+|+++|+++.+...
T Consensus       122 DPPY~~----~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         122 DPPFHF----NLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             CCCSSS----CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             chhHhh----hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            987332    3344445544  3689999999977544

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.87  E-value=3.8e-09  Score=98.22  Aligned_cols=111  Identities=14%  Similarity=0.119  Sum_probs=88.6

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ec---CCCCcee
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--EL---PFGIQKV  148 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~---~~~~~~~  148 (519)
                      .+.++|||||+++|..++.+|++ + .++|+.+|.+ +.++.|++++++.|+.++|+++.+++.+.  .+   ....++|
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f  137 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  137 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence            46789999999999999999876 2 4699999999 79999999999999999999999999775  11   1012689


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFIC  193 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~  193 (519)
                      |+|+.+.-     . ......++.+.++|+|||+++.+..-|.+.
T Consensus       138 D~iFiDa~-----k-~~y~~~~e~~~~ll~~gGiii~DNvl~~G~  176 (227)
T d1susa1         138 DFIFVDAD-----K-DNYLNYHKRLIDLVKVGGVIGYDNTLWNGS  176 (227)
T ss_dssp             SEEEECSC-----S-TTHHHHHHHHHHHBCTTCCEEEETTTGGGG
T ss_pred             eEEEeccc-----h-hhhHHHHHHHHhhcCCCcEEEEccCCCCCc
Confidence            99988642     1 234455666678999999999998775443

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.74  E-value=1.1e-08  Score=92.70  Aligned_cols=108  Identities=25%  Similarity=0.275  Sum_probs=82.9

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-----cCCCCc
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-----LPFGIQ  146 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~  146 (519)
                      ....++..+||++||+|..+..+++. +..+|+|+|.+ +|++.|+++.+..+  +++.++++++.++.     ...  +
T Consensus        19 l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~~~--~   94 (192)
T d1m6ya2          19 LKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGI--E   94 (192)
T ss_dssp             HCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTC--S
T ss_pred             hCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHcCC--C
Confidence            35678999999999999998888775 56799999999 69999999987644  67999999887652     223  7


Q ss_pred             eeeEEEEeccccc--c----ccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        147 KVDIIISEWMGYC--L----FYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       147 ~~D~Ivs~~~~~~--l----~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ++|.|+.+.-...  +    ..-......+..+.++|+|||.++.
T Consensus        95 ~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~i  139 (192)
T d1m6ya2          95 KVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVV  139 (192)
T ss_dssp             CEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEE
T ss_pred             CcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeee
Confidence            8999988642110  1    1123456778888999999999874

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=7.2e-08  Score=87.93  Aligned_cols=102  Identities=17%  Similarity=0.285  Sum_probs=84.7

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      .++++|+|+|+|.|.-++.+|-. +..+|+.+|.+ .-+...++.+...++.+ +++++++++++...   .+||+|+|.
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~~---~~fD~V~sR  139 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPSE---PPFDGVISR  139 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCCC---SCEEEEECS
T ss_pred             hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcc-eeeeccchhhhccc---cccceehhh
Confidence            45679999999999998888865 66799999999 68888888888889865 99999999976433   689999998


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      .+.       .+..++.-..+++++||.++.-.+.
T Consensus       140 A~~-------~~~~ll~~~~~~l~~~g~~~~~KG~  167 (207)
T d1jsxa_         140 AFA-------SLNDMVSWCHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             CSS-------SHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred             hhc-------CHHHHHHHHHHhcCCCcEEEEECCC
Confidence            762       3667788888999999999877665

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.56  E-value=1.9e-07  Score=87.55  Aligned_cols=106  Identities=16%  Similarity=0.117  Sum_probs=79.2

Q ss_pred             HHHhcCC-CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         69 SMYHNKH-LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        69 ai~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      .+..... .....+|||||||+|.++..++++ +.-+++..|..+.++       ..+..++++++.+|+.+ +.|    
T Consensus        71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~ri~~~~gd~~~-~~p----  138 (244)
T d1fp1d2          71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIE-------NAPPLSGIEHVGGDMFA-SVP----  138 (244)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCCCCTTEEEEECCTTT-CCC----
T ss_pred             HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhh-------ccCCCCCeEEecCCccc-ccc----
Confidence            3444444 345689999999999999988776 666999999976543       34556789999999865 344    


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      ..|+++...+.|....+ ....+++.+++.|+|||.++...
T Consensus       139 ~~D~~~l~~vLh~~~de-~~~~iL~~~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         139 QGDAMILKAVCHNWSDE-KCIEFLSNCHKALSPNGKVIIVE  178 (244)
T ss_dssp             CEEEEEEESSGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceEEEEehhhhhCCHH-HHHHHHHHHHHHcCCCcEEEEEE
Confidence            35999988887765443 45677899999999999887543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.53  E-value=1e-07  Score=88.94  Aligned_cols=83  Identities=16%  Similarity=0.259  Sum_probs=67.3

Q ss_pred             HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         68 NSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        68 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      +.|.....+.++++|||||||+|.++..+++.+. +|+|||++ .+++.++++....   ++++++++|+.+++++.  .
T Consensus        11 ~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~~--~   84 (235)
T d1qama_          11 DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPK--N   84 (235)
T ss_dssp             HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCS--S
T ss_pred             HHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhccccc--c
Confidence            3455667788999999999999999999999865 99999999 6889888876442   46999999999887764  4


Q ss_pred             eeeEEEEecc
Q psy14674        147 KVDIIISEWM  156 (519)
Q Consensus       147 ~~D~Ivs~~~  156 (519)
                      ....||++..
T Consensus        85 ~~~~vv~NLP   94 (235)
T d1qama_          85 QSYKIFGNIP   94 (235)
T ss_dssp             CCCEEEEECC
T ss_pred             ccceeeeeeh
Confidence            4456778765

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.53  E-value=4.7e-08  Score=93.57  Aligned_cols=111  Identities=18%  Similarity=0.133  Sum_probs=83.4

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC---------CCCCcEEEEEceeeEeecCCCCc
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN---------NLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~---------~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      .++++||.||+|.|..+..+.+.+..+|++||++ ++++.|++....+         .-..|++++.+|+..+--..  +
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~--~  148 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN--R  148 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC--C
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc--C
Confidence            5678999999999999998888877899999999 5999999865322         23468999999997652222  7


Q ss_pred             eeeEEEEeccccccccc-hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        147 KVDIIISEWMGYCLFYE-SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e-~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +||+|+.+.....-... -.-..+++.+++.|+|||+++....+
T Consensus       149 ~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s  192 (276)
T d1mjfa_         149 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  192 (276)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence            89999998764221111 11246788899999999999976544

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=2e-07  Score=92.61  Aligned_cols=94  Identities=23%  Similarity=0.275  Sum_probs=73.9

Q ss_pred             HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--c
Q psy14674         65 TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--L  141 (519)
Q Consensus        65 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~  141 (519)
                      .+.+.+.+.....++.+|||+-||+|.+++.+|+. +++|+|+|.+ ++++.|+++++.||+.+ ++++.++.++..  .
T Consensus       199 ~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~n-~~~~~~~~~~~~~~~  276 (358)
T d1uwva2         199 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEEDVTKQ  276 (358)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCTTSCCSSS
T ss_pred             HHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhccccc-ceeeecchhhhhhhh
Confidence            33334444456678899999999999999999987 4599999999 69999999999999976 999999987641  1


Q ss_pred             CCCCceeeEEEEecccccc
Q psy14674        142 PFGIQKVDIIISEWMGYCL  160 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l  160 (519)
                      .....++|+||.++.-.++
T Consensus       277 ~~~~~~~d~vilDPPR~G~  295 (358)
T d1uwva2         277 PWAKNGFDKVLLDPARAGA  295 (358)
T ss_dssp             GGGTTCCSEEEECCCTTCC
T ss_pred             hhhhccCceEEeCCCCccH
Confidence            2112679999999875443

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.44  E-value=1.5e-07  Score=91.42  Aligned_cols=112  Identities=13%  Similarity=0.046  Sum_probs=82.9

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHC--C--CCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKN--N--LSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~--~--~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      ...++||.||.|.|..+..+.+. +..+|++||++ ++++.|++.+...  +  -..+++++.+|+.++-.. ..++||+
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~~yDv  154 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-TEERYDV  154 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-CCCCEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh-cCCcccE
Confidence            45689999999999999988887 56799999999 6999999886431  1  235799999999876211 2278999


Q ss_pred             EEEecccccccc----chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLFY----ESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~~----e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+.+........    .-.-..+++.+++.|+|||+++.....
T Consensus       155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s  197 (312)
T d1uira_         155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (312)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence            998774322111    111246788889999999999866544

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.43  E-value=1.4e-07  Score=90.69  Aligned_cols=112  Identities=18%  Similarity=0.103  Sum_probs=82.7

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCC--C-CCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNN--L-SDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ...++||-||.|.|..+..+.+. +..+|++||++ ++++.|++....+.  + ..|++++.+|+.++- ....++||+|
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l-~~~~~~yDvI  166 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYV-RKFKNEFDVI  166 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHG-GGCSSCEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHH-hcCCCCCCEE
Confidence            45689999999999999999887 56799999999 59999998765432  2 368999999998762 2223789999


Q ss_pred             EEecccccc--ccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        152 ISEWMGYCL--FYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       152 vs~~~~~~l--~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.+......  ...-.-..+++.+++.|+|||+++....+
T Consensus       167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             EEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence            998653211  11112356788889999999999977655

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.37  E-value=6e-07  Score=81.02  Aligned_cols=110  Identities=15%  Similarity=0.146  Sum_probs=70.2

Q ss_pred             CCCEEEEECCcccH----HHHHHHHcC-----CCEEEEEech-HHHHHHHHHH--------------H----HCCCC---
Q psy14674         78 KGKIVLDIGCGTGI----LSMFAAKSG-----AARVIGIECS-NIVEYAKEIV--------------D----KNNLS---  126 (519)
Q Consensus        78 ~~~~VLDiGcGtG~----ls~~la~~g-----~~~V~gvD~s-~~~~~A~~~~--------------~----~~~~~---  126 (519)
                      +..+||++|||+|.    +++.+.+.+     .-+|+|+|++ .+++.|++-.              .    ..+..   
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            45699999999995    455555431     1279999999 6899887432              0    10100   


Q ss_pred             ---------CcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        127 ---------DVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       127 ---------~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                               ..+.+...+......+ ..++||+|+|.-+..++. ......+++.+.+.|+|||+++.....
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~fDvI~CRNVLiYf~-~~~~~~vl~~l~~~L~pGG~L~lG~sE  173 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFAGHSE  173 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred             eeehHHHHHHHHHHhhhhccccccC-CCCCccEEEeehhHHhcC-HHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence                     1133333333322111 127899999966644443 345678899999999999998866554

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.33  E-value=4.2e-07  Score=87.20  Aligned_cols=113  Identities=16%  Similarity=0.077  Sum_probs=84.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHC---CCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKN---NLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~---~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ...++||-||-|.|..+..+.+. +..+|++||++ ++++.|++....+   .-..+++++.+|..+.-.....++||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            45689999999999999999887 66799999999 6999999876432   1246799999998775322112689999


Q ss_pred             EEeccccccccch-hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        152 ISEWMGYCLFYES-MLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       152 vs~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.+.......... .-..+++.+++.|+|||+++....+
T Consensus       159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            9976532211111 2345788889999999999987765

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.32  E-value=1.5e-06  Score=80.63  Aligned_cols=105  Identities=16%  Similarity=0.184  Sum_probs=84.3

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC-CCCceeeEEEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP-FGIQKVDIIIS  153 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~D~Ivs  153 (519)
                      ..+.+++|||+|.|.-++.+|-. +..+|+.+|.+ .-+...+...+..++.+ +.++++.++++... ...++||+|+|
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n-~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCC-cEEEeehhhhccccccccccceEEEE
Confidence            35679999999999988888764 77799999999 57777788888888875 88999999876322 11268999999


Q ss_pred             eccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      ..+       ..+..++.-...++++||.++.-.+.
T Consensus       148 RAv-------a~l~~ll~~~~~~l~~~g~~i~~KG~  176 (239)
T d1xdza_         148 RAV-------ARLSVLSELCLPLVKKNGLFVALKAA  176 (239)
T ss_dssp             ECC-------SCHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred             hhh-------hCHHHHHHHHhhhcccCCEEEEECCC
Confidence            887       23677788888999999999876665

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.29  E-value=3.5e-08  Score=92.59  Aligned_cols=82  Identities=21%  Similarity=0.289  Sum_probs=66.8

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV  148 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  148 (519)
                      |.....+.++.+|||||||+|.++..+++.+. +|+|||++ .+++.++++...   ..+++++++|+.+++++.  ...
T Consensus        21 Iv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~D~l~~~~~~--~~~   94 (245)
T d1yuba_          21 IIKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQFPN--KQR   94 (245)
T ss_dssp             HHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTCCC--SSE
T ss_pred             HHHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhh---ccchhhhhhhhhcccccc--cee
Confidence            44456778899999999999999999999865 99999999 688887765432   346999999999887775  677


Q ss_pred             eEEEEeccc
Q psy14674        149 DIIISEWMG  157 (519)
Q Consensus       149 D~Ivs~~~~  157 (519)
                      +.||++...
T Consensus        95 ~~vv~NLPY  103 (245)
T d1yuba_          95 YKIVGNIPY  103 (245)
T ss_dssp             EEEEEECCS
T ss_pred             eeEeeeeeh
Confidence            888888763

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.28  E-value=5.3e-07  Score=88.26  Aligned_cols=105  Identities=18%  Similarity=0.146  Sum_probs=73.6

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc------CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS------GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~------g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      ...++.+|||.|||+|.+...+.+.      ...+++|+|++ .+++.|+.++...+..  ..+.++|..... +.  .+
T Consensus       114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~--~~~~~~d~~~~~-~~--~~  188 (328)
T d2f8la1         114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--MTLLHQDGLANL-LV--DP  188 (328)
T ss_dssp             TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCTTSCC-CC--CC
T ss_pred             CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh--hhhhcccccccc-cc--cc
Confidence            3456779999999999988877542      22379999999 5999999888877654  567777765432 32  78


Q ss_pred             eeEEEEeccccccccc---------------hhHHHHHHHHhcccCcCeEEE
Q psy14674        148 VDIIISEWMGYCLFYE---------------SMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e---------------~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ||+|++++........               .....++....++|+|||+++
T Consensus       189 fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~  240 (328)
T d2f8la1         189 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF  240 (328)
T ss_dssp             EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred             ccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceE
Confidence            9999999863211110               112235677779999999654

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1e-06  Score=83.77  Aligned_cols=84  Identities=21%  Similarity=0.334  Sum_probs=69.7

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      .|.....+.++..|||||+|.|.++..+++.++ +|++||++ .+++..++........++++++.+|+.+..++    .
T Consensus        12 kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~----~   86 (278)
T d1zq9a1          12 SIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP----F   86 (278)
T ss_dssp             HHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC----C
T ss_pred             HHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh----h
Confidence            344456677899999999999999999999865 99999999 59999999888777667899999999877655    3


Q ss_pred             eeEEEEeccc
Q psy14674        148 VDIIISEWMG  157 (519)
Q Consensus       148 ~D~Ivs~~~~  157 (519)
                      .+.||++...
T Consensus        87 ~~~vV~NLPY   96 (278)
T d1zq9a1          87 FDTCVANLPY   96 (278)
T ss_dssp             CSEEEEECCG
T ss_pred             hhhhhcchHH
Confidence            5678888753

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=5.4e-07  Score=86.19  Aligned_cols=114  Identities=18%  Similarity=0.131  Sum_probs=82.8

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHC---CCCCcEEEEEceeeEeecCCCCceee
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKN---NLSDVVTILKGKVEEVELPFGIQKVD  149 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~---~~~~~i~~~~~d~~~~~~~~~~~~~D  149 (519)
                      .....++||-||.|.|..+..+.+. +..+|++||++ ++++.|++....+   --..|++++.+|+..+-.. ..++||
T Consensus        75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~~yD  153 (285)
T d2o07a1          75 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFD  153 (285)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-CSSCEE
T ss_pred             hCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc-CCCCCC
Confidence            3456789999999999999999987 67899999999 6999999876432   1246899999998876222 227899


Q ss_pred             EEEEeccccccccc-hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        150 IIISEWMGYCLFYE-SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e-~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +|+++.....-... -.-..+++.+++.|+|||+++.....
T Consensus       154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            99998653211111 11235678889999999999976544

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.24  E-value=1.2e-06  Score=83.23  Aligned_cols=112  Identities=14%  Similarity=0.114  Sum_probs=83.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHC--CC-CCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKN--NL-SDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~--~~-~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ...++||-||.|.|..+..+.+. +..+|+.||++ ++++.|++....+  .+ ..|++++.+|+...-.. ..++||+|
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~-~~~~yDvI  152 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK-SENQYDVI  152 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT-CCSCEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh-cCCCCCEE
Confidence            45689999999999999999887 67899999999 6999999886432  12 35799999998875221 22789999


Q ss_pred             EEeccccccccch-hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        152 ISEWMGYCLFYES-MLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       152 vs~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.+.....-.... .-..+.+.+++.|+|||+++.....
T Consensus       153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence            9976432211111 2346678888999999999977655

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.23  E-value=5.9e-07  Score=86.63  Aligned_cols=112  Identities=20%  Similarity=0.107  Sum_probs=80.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCC---CCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNL---SDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ...++||-||.|.|..+..+.+. +..+|++||++ ++++.|++....+.-   ..|++++.+|+.++-. ...++||+|
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~-~~~~~yDvI  183 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK-NHKNEFDVI  183 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH-HCTTCEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHH-hCCCCCCEE
Confidence            45679999999999999999887 56799999999 699999987654321   3579999999887621 122789999


Q ss_pred             EEeccccccccc-hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        152 ISEWMGYCLFYE-SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       152 vs~~~~~~l~~e-~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.+......... -.-..+++.+++.|+|||+++....+
T Consensus       184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s  222 (312)
T d2b2ca1         184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES  222 (312)
T ss_dssp             EECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence            997653211111 12345678889999999999977655

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.16  E-value=1.5e-06  Score=81.34  Aligned_cols=95  Identities=15%  Similarity=0.174  Sum_probs=73.1

Q ss_pred             CCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      ...+|||||||+|.++..++++ +..+++..|..+.++.       .+..+||+++.+|+.+ +.    ..+|+++...+
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~~~~~rv~~~~gD~f~-~~----p~aD~~~l~~v  147 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVEN-------LSGSNNLTYVGGDMFT-SI----PNADAVLLKYI  147 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT-------CCCBTTEEEEECCTTT-CC----CCCSEEEEESC
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHh-------CcccCceEEEecCccc-CC----CCCcEEEEEee
Confidence            3478999999999999988776 5669999999865543       4556889999999875 23    35799998888


Q ss_pred             ccccccchhHHHHHHHHhcccCcC---eEEEc
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATN---GLLFP  185 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~Lkpg---G~lip  185 (519)
                      .|....+ ....+|+.+++.|+||   |+++.
T Consensus       148 LHdw~d~-~~~~iL~~~~~al~pgg~~~~lli  178 (244)
T d1fp2a2         148 LHNWTDK-DCLRILKKCKEAVTNDGKRGKVTI  178 (244)
T ss_dssp             GGGSCHH-HHHHHHHHHHHHHSGGGCCCEEEE
T ss_pred             cccCChH-HHHHHHHHHHHHcCcccCCcEEEE
Confidence            7765443 4567789999999998   55553

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.11  E-value=1.8e-06  Score=85.57  Aligned_cols=104  Identities=21%  Similarity=0.089  Sum_probs=78.2

Q ss_pred             CCCEEEEECCcccHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCC--------------cEEEEEceeeEeec
Q psy14674         78 KGKIVLDIGCGTGILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSD--------------VVTILKGKVEEVEL  141 (519)
Q Consensus        78 ~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~--------------~i~~~~~d~~~~~~  141 (519)
                      ++.+|||..||||..++.+|+ .|+.+|+++|+| ++++.++++++.|+..+              .+.+.+.|+..+..
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            678999999999999996554 688899999999 69999999999998754              35555666544321


Q ss_pred             CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      . ..+.||+|..++.|.       ...++++..+.++.||++......
T Consensus       125 ~-~~~~fDvIDiDPfGs-------~~pfldsAi~a~~~~Gll~vTaTD  164 (375)
T d2dula1         125 E-RHRYFHFIDLDPFGS-------PMEFLDTALRSAKRRGILGVTATD  164 (375)
T ss_dssp             H-STTCEEEEEECCSSC-------CHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             h-hcCcCCcccCCCCCC-------cHHHHHHHHHHhccCCEEEEEecC
Confidence            1 126799999988643       233566666788999999866544

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.07  E-value=4.5e-06  Score=77.92  Aligned_cols=106  Identities=16%  Similarity=0.139  Sum_probs=74.3

Q ss_pred             HHHhcCCC-CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674         69 SMYHNKHL-FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ  146 (519)
Q Consensus        69 ai~~~~~~-~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  146 (519)
                      .++..... ....+|||||||+|.++..++++ +..++++.|..+.++.       ....++++++.+|+.+ +.|.   
T Consensus        71 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~~~~~r~~~~~~d~~~-~~P~---  139 (243)
T d1kyza2          71 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED-------APSYPGVEHVGGDMFV-SIPK---  139 (243)
T ss_dssp             HHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTT-------CCCCTTEEEEECCTTT-CCCC---
T ss_pred             HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhh-------cccCCceEEecccccc-cCCC---
Confidence            34444333 33579999999999999988876 5669999999865432       3345679999999865 4553   


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                       .|+++...+.|.... .....+++++++.|+|||.++...
T Consensus       140 -ad~~~l~~vlh~~~d-~~~~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         140 -ADAVFMKWICHDWSD-EHCLKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             -CSCEECSSSSTTSCH-HHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred             -cceEEEEEEeecCCH-HHHHHHHHHHHHhcCCCceEEEEE
Confidence             355554455444333 456678999999999999877443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.05  E-value=2.8e-06  Score=77.69  Aligned_cols=103  Identities=17%  Similarity=0.124  Sum_probs=68.7

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI  145 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  145 (519)
                      .+.......++.+|||.|||+|.+...+.+.  ...+++|+|+++ ++..          ..+..+++++.......   
T Consensus        10 ~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~~~~---   76 (223)
T d2ih2a1          10 FMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLLWEPG---   76 (223)
T ss_dssp             HHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGGCCCS---
T ss_pred             HHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhccccc---
Confidence            3444456678899999999999887776654  356899999994 3322          23357788887654333   


Q ss_pred             ceeeEEEEecccccccc--------------------------chhHHHHHHHHhcccCcCeEEE
Q psy14674        146 QKVDIIISEWMGYCLFY--------------------------ESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l~~--------------------------e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      .+||+|++++.......                          ......++....++|+|||.++
T Consensus        77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~  141 (223)
T d2ih2a1          77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLV  141 (223)
T ss_dssp             SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceE
Confidence            78999999875321110                          0112344566668999999865

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=7.5e-06  Score=72.66  Aligned_cols=99  Identities=19%  Similarity=0.256  Sum_probs=69.3

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCC
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFG  144 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~  144 (519)
                      -+.++.+||||||+.|.++..+++.  +..+|+|+|+.+|          ..+ +.+.++++|+.+..        ... 
T Consensus        19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----------~~i-~~~~~~~~d~~~~~~~~~~~~~~~~-   86 (180)
T d1ej0a_          19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----------DPI-VGVDFLQGDFRDELVMKALLERVGD-   86 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----------CCC-TTEEEEESCTTSHHHHHHHHHHHTT-
T ss_pred             ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----------ccc-CCceEeecccccchhhhhhhhhccC-
Confidence            4578899999999999999988875  4568999998753          123 34889999886531        122 


Q ss_pred             CceeeEEEEeccccccccc--------hhHHHHHHHHhcccCcCeEEEcc
Q psy14674        145 IQKVDIIISEWMGYCLFYE--------SMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e--------~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                       .++|+|+|+.....-...        ......+.-+.++|++||.+|.-
T Consensus        87 -~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K  135 (180)
T d1ej0a_          87 -SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             -CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence             689999998753322211        12224455556899999999843

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.94  E-value=1.4e-05  Score=77.31  Aligned_cols=113  Identities=14%  Similarity=0.121  Sum_probs=83.7

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ...+|.+|||+.||.|.=+..++..  +...++|+|.+ .-+...+++++..|..+ +.+...|...+....  .+||.|
T Consensus       113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d~~~~~~~~--~~fD~I  189 (313)
T d1ixka_         113 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGELN--VEFDKI  189 (313)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGGGC--CCEEEE
T ss_pred             cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-ccccccccccccccc--ccccEE
Confidence            5678999999999999877766654  35589999999 68888888999888865 667777766554333  789999


Q ss_pred             EEecccccc--c----------cc-------hhHHHHHHHHhcccCcCeEEEccCCcc
Q psy14674        152 ISEWMGYCL--F----------YE-------SMLDTVLYARDKWLATNGLLFPDKASL  190 (519)
Q Consensus       152 vs~~~~~~l--~----------~e-------~~l~~~l~~~~r~LkpgG~lip~~~~~  190 (519)
                      +.+..-...  .          ..       .....++....++|||||.+|-++|++
T Consensus       190 LvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         190 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             EEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence            986631111  0          01       122356677779999999999999993

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=2.9e-05  Score=73.97  Aligned_cols=114  Identities=16%  Similarity=0.108  Sum_probs=80.6

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII  151 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I  151 (519)
                      ....+|.+|||+.+|.|.=+..++.. ...+|+|+|.+ .-++..+++++..|+.+ +.+...+....... ..++||.|
T Consensus        98 L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~~~~~~-~~~~fd~I  175 (284)
T d1sqga2          98 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRYPSQWC-GEQQFDRI  175 (284)
T ss_dssp             HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTCTHHHH-TTCCEEEE
T ss_pred             cCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccccchhc-ccccccEE
Confidence            35678999999999999877777765 34689999999 57888889999999875 44443333221111 11689999


Q ss_pred             EEecc----ccccccc---------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        152 ISEWM----GYCLFYE---------------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       152 vs~~~----~~~l~~e---------------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      +.+..    |..-.+.               .....++....++|||||.++-++|+
T Consensus       176 L~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS  232 (284)
T d1sqga2         176 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS  232 (284)
T ss_dssp             EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred             EEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence            98763    2211111               12336777888999999999999999

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.81  E-value=2.6e-05  Score=69.16  Aligned_cols=108  Identities=22%  Similarity=0.235  Sum_probs=76.9

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec---CCCCceee
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL---PFGIQKVD  149 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~~D  149 (519)
                      ....+|..++|..+|.|..+..+.+.+ .+|+|+|.. ++++.|++.     ..+++.+++++..++.-   ....+++|
T Consensus        14 l~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~~~~~vd   87 (182)
T d1wg8a2          14 LAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAALGVERVD   87 (182)
T ss_dssp             HTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred             cCCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHcCCCccC
Confidence            356789999999999999999888875 499999999 588887764     23569999998877521   11126899


Q ss_pred             EEEEecccc--cccc----chhHHHHHHHHhcccCcCeEEEccC
Q psy14674        150 IIISEWMGY--CLFY----ESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       150 ~Ivs~~~~~--~l~~----e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      .|+.+.-..  .+..    -..+...|..+..+|+|||.++.-.
T Consensus        88 gIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~  131 (182)
T d1wg8a2          88 GILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA  131 (182)
T ss_dssp             EEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence            999875211  1110    0234456777789999999887433

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=6.1e-06  Score=77.22  Aligned_cols=83  Identities=12%  Similarity=0.063  Sum_probs=60.5

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCC---C
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFG---I  145 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~---~  145 (519)
                      |.......++..|||||||+|.++..+++.+ ++|+|||++ .+++..++....   .++++++.+|+.++.++..   .
T Consensus        13 Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~l~~~~~~~~~~~   88 (252)
T d1qyra_          13 IVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMTFNFGELAEKM   88 (252)
T ss_dssp             HHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGGCCHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhh---ccchhHHhhhhhhhccccccccc
Confidence            3334456788999999999999999999986 499999999 588887764322   3569999999987644310   0


Q ss_pred             ceeeEEEEecc
Q psy14674        146 QKVDIIISEWM  156 (519)
Q Consensus       146 ~~~D~Ivs~~~  156 (519)
                      ++.-.|+++..
T Consensus        89 ~~~~~vvgNlP   99 (252)
T d1qyra_          89 GQPLRVFGNLP   99 (252)
T ss_dssp             TSCEEEEEECC
T ss_pred             CCCeEEEecch
Confidence            12236667765

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=8.3e-05  Score=70.99  Aligned_cols=113  Identities=11%  Similarity=0.020  Sum_probs=80.5

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC-CCceeeE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF-GIQKVDI  150 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~D~  150 (519)
                      ...+|.+|||+.||.|.=+..+|..  +..+|+|+|++ .-++.++++++..|+.+ +.+...|...+.... ..++||.
T Consensus        91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~~~~~~~~~~~~~fD~  169 (293)
T d2b9ea1          91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDPRYHEVHY  169 (293)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTCGGGTTEEE
T ss_pred             CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhhhhhcccccccceeeE
Confidence            4578999999999999877777654  45689999999 57889999999999876 889988887653221 1257999


Q ss_pred             EEEeccccccc--------------c-c------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        151 IISEWMGYCLF--------------Y-E------SMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       151 Ivs~~~~~~l~--------------~-e------~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+.+..-....              . .      .....++.+.. .|+|||.+|-++|+
T Consensus       170 VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCS  228 (293)
T d2b9ea1         170 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCS  228 (293)
T ss_dssp             EEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESC
T ss_pred             EeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeecc
Confidence            99876411110              0 0      01122344443 47999999999998

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.53  E-value=4.9e-05  Score=69.91  Aligned_cols=120  Identities=14%  Similarity=0.167  Sum_probs=74.3

Q ss_pred             HhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-----CCCEEEEEech-HHHHHHHHHHHHCCCCCc
Q psy14674         55 EMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-----GAARVIGIECS-NIVEYAKEIVDKNNLSDV  128 (519)
Q Consensus        55 ~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-----g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~  128 (519)
                      .+++.......|.+.|..    .++++|||||++.|..+.+++..     ..++|+|+|+. .....+.      ...++
T Consensus        61 p~~k~p~d~~~~~eli~~----~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------~~~~~  130 (232)
T d2bm8a1          61 RMLKDPDTQAVYHDMLWE----LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMEN  130 (232)
T ss_dssp             ECCSCHHHHHHHHHHHHH----HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTT
T ss_pred             ecccCHHHHHHHHHHHHH----hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh------ccccc
Confidence            344444455666665643    25779999999999776655532     35699999997 3322211      11356


Q ss_pred             EEEEEceeeEeecCC--CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        129 VTILKGKVEEVELPF--GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       129 i~~~~~d~~~~~~~~--~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      |+++++|..+...-.  ....+|+|+.+.. |  .++..+..+  +..++|++||++|.+...
T Consensus       131 I~~i~gDs~~~~~~~~l~~~~~dlIfID~~-H--~~~~v~~~~--~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         131 ITLHQGDCSDLTTFEHLREMAHPLIFIDNA-H--ANTFNIMKW--AVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             EEEEECCSSCSGGGGGGSSSCSSEEEEESS-C--SSHHHHHHH--HHHHTCCTTCEEEECSCH
T ss_pred             eeeeecccccHHHHHHHHhcCCCEEEEcCC-c--chHHHHHHH--HHhcccCcCCEEEEEcCC
Confidence            999999986542211  1146788887653 2  233333333  245799999999887653

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.38  E-value=0.00012  Score=73.73  Aligned_cols=107  Identities=21%  Similarity=0.126  Sum_probs=73.9

Q ss_pred             CCCCCCEEEEECCcccHHHHHHHHc----CC----------CEEEEEech-HHHHHHHHHHHHCCCCC-cEEEEEceeeE
Q psy14674         75 HLFKGKIVLDIGCGTGILSMFAAKS----GA----------ARVIGIECS-NIVEYAKEIVDKNNLSD-VVTILKGKVEE  138 (519)
Q Consensus        75 ~~~~~~~VLDiGcGtG~ls~~la~~----g~----------~~V~gvD~s-~~~~~A~~~~~~~~~~~-~i~~~~~d~~~  138 (519)
                      ...++.+|+|-.||+|.+...+.+.    +.          ..++|+|++ .+...|+.++.-.+... ...+..+|..+
T Consensus       159 ~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~  238 (425)
T d2okca1         159 NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE  238 (425)
T ss_dssp             CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTT
T ss_pred             cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhh
Confidence            4456789999999999988777654    11          249999999 58899988888777642 34566676654


Q ss_pred             eecCCCCceeeEEEEecccccccc--------------chhHHHHHHHHhcccCcCeEEE
Q psy14674        139 VELPFGIQKVDIIISEWMGYCLFY--------------ESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       139 ~~~~~~~~~~D~Ivs~~~~~~l~~--------------e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      .. +.  .+||+|++++.......              ...-..++..+.++|++||.+.
T Consensus       239 ~~-~~--~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~  295 (425)
T d2okca1         239 KE-PS--TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA  295 (425)
T ss_dssp             SC-CS--SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hh-cc--cccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEE
Confidence            32 22  78999999986321110              0112246777778999999654

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.23  E-value=0.00015  Score=67.00  Aligned_cols=77  Identities=14%  Similarity=0.082  Sum_probs=57.1

Q ss_pred             CEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHH---HHHCC-----CCCcEEEEEceeeEeecCCCCceeeE
Q psy14674         80 KIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEI---VDKNN-----LSDVVTILKGKVEEVELPFGIQKVDI  150 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~---~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~D~  150 (519)
                      .+|||.-||.|..++.+|..|+ +|+++|.++ +....+..   +..+.     ...+++++++|..++- ....++||+
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L-~~~~~~~Dv  167 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL-TDITPRPQV  167 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHS-TTCSSCCSE
T ss_pred             CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHH-hccCCCCCE
Confidence            4899999999999999999986 899999995 44444433   33322     1247999999987752 111267999


Q ss_pred             EEEecccc
Q psy14674        151 IISEWMGY  158 (519)
Q Consensus       151 Ivs~~~~~  158 (519)
                      |+.++|..
T Consensus       168 IYlDPMFp  175 (250)
T d2oyra1         168 VYLDPMFP  175 (250)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCc
Confidence            99999843

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.15  E-value=9.2e-05  Score=67.82  Aligned_cols=112  Identities=17%  Similarity=0.186  Sum_probs=64.9

Q ss_pred             HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674         70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK  147 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  147 (519)
                      |.+...+.++.+|+|+|||.|.++..++... ...|.|+++- +..+. -.....++. +-+++...+.-. .++.  ++
T Consensus        58 ~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv~-~l~~--~~  132 (257)
T d2p41a1          58 FVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDVF-FIPP--ER  132 (257)
T ss_dssp             HHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCTT-TSCC--CC
T ss_pred             HHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Ccccccccc-ccccchhhhhHH-hcCC--Cc
Confidence            3344456778899999999999999999773 3478888874 31000 000011111 224444332211 2333  78


Q ss_pred             eeEEEEeccccccccc---hhHHHHHHHHhcccCcCeEEEcc
Q psy14674        148 VDIIISEWMGYCLFYE---SMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e---~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +|+|+|+........+   ..--.+++.+.++|+|||.|+.-
T Consensus       133 ~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK  174 (257)
T d2p41a1         133 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  174 (257)
T ss_dssp             CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence            9999998643211111   11124567778999999988743

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.76  E-value=0.00059  Score=59.85  Aligned_cols=99  Identities=28%  Similarity=0.370  Sum_probs=61.1

Q ss_pred             HHHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEc---eeeEe---
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG---KVEEV---  139 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~---d~~~~---  139 (519)
                      ++.+...+.+|.+||-+|||. |.++..+|++ |+++|+++|.+ +-++.|++    .|..   .++..   +..+.   
T Consensus        19 al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~   91 (182)
T d1vj0a2          19 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKA   91 (182)
T ss_dssp             HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCccchhheeccccccccccccccccccccccccc----ccce---EEEeccccchHHHHHH
Confidence            454555678899999999984 6666666665 88799999999 57777765    3432   22222   11111   


Q ss_pred             --ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        140 --ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       140 --~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                        .+.. ...+|+|+-.. +    ....    ++...++|+|||.++
T Consensus        92 i~~~~~-~~g~Dvvid~v-G----~~~~----~~~a~~~l~~~G~iv  128 (182)
T d1vj0a2          92 IMDITH-GRGADFILEAT-G----DSRA----LLEGSELLRRGGFYS  128 (182)
T ss_dssp             HHHHTT-TSCEEEEEECS-S----CTTH----HHHHHHHEEEEEEEE
T ss_pred             HHHhhC-CCCceEEeecC-C----chhH----HHHHHHHhcCCCEEE
Confidence              1111 14699987532 1    1122    333447899999986

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.70  E-value=0.00016  Score=64.55  Aligned_cols=106  Identities=20%  Similarity=0.050  Sum_probs=64.6

Q ss_pred             hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCC
Q psy14674         72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPF  143 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~  143 (519)
                      +...+.+|.+||.+|||. |.++..++++ |+.+|+++|.+ +-++.|++.    |..   .++...-.++     .+. 
T Consensus        19 ~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~i~~~t-   90 (195)
T d1kola2          19 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFE---IADLSLDTPLHEQIAALL-   90 (195)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCE---EEETTSSSCHHHHHHHHH-
T ss_pred             HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----ccc---EEEeCCCcCHHHHHHHHh-
Confidence            346889999999999997 6666666654 88899999999 577777653    421   2222111111     111 


Q ss_pred             CCceeeEEEEeccc------cccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        144 GIQKVDIIISEWMG------YCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~------~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ....+|+++-..-.      +...........++...+.++|||.++.
T Consensus        91 ~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~  138 (195)
T d1kola2          91 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI  138 (195)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEE
Confidence            11469999853210      1111111123456777789999998873

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.41  E-value=0.00026  Score=62.02  Aligned_cols=97  Identities=28%  Similarity=0.296  Sum_probs=61.6

Q ss_pred             hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCC
Q psy14674         72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPF  143 (519)
Q Consensus        72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~  143 (519)
                      +...+.+|.+||-+|||. |.++..+++. |+.+|+++|.+ +-++.|++.    |..   .++.-.-+++     ....
T Consensus        21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~---~~i~~~~~~~~~~v~~~t~   93 (174)
T d1jqba2          21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GAT---DILNYKNGHIEDQVMKLTN   93 (174)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCS---EEECGGGSCHHHHHHHHTT
T ss_pred             HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Ccc---ccccccchhHHHHHHHHhh
Confidence            346788999999999986 7777777776 78899999999 467777653    322   2232211111     1111


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                       ...+|+|+-..-     ....    ++...++|+|+|.++.
T Consensus        94 -g~G~D~vid~~g-----~~~~----~~~a~~~~~~~G~iv~  125 (174)
T d1jqba2          94 -GKGVDRVIMAGG-----GSET----LSQAVKMVKPGGIISN  125 (174)
T ss_dssp             -TSCEEEEEECSS-----CTTH----HHHHHHHEEEEEEEEE
T ss_pred             -ccCcceEEEccC-----CHHH----HHHHHHHHhcCCEEEE
Confidence             145999875332     1122    3344478999999884

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0017  Score=66.81  Aligned_cols=110  Identities=14%  Similarity=-0.013  Sum_probs=67.8

Q ss_pred             CCCCCCCEEEEECCcccHHHHHHHHc----C---------------CCEEEEEech-HHHHHHHHHHHHCCCCCcE----
Q psy14674         74 KHLFKGKIVLDIGCGTGILSMFAAKS----G---------------AARVIGIECS-NIVEYAKEIVDKNNLSDVV----  129 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~ls~~la~~----g---------------~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i----  129 (519)
                      ....++.+|+|-.||+|.+...+.+.    .               ...++|+|++ .+...|+.++--.+....+    
T Consensus       160 l~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~  239 (524)
T d2ar0a1         160 LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG  239 (524)
T ss_dssp             HCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTB
T ss_pred             ccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccc
Confidence            34566789999999999887766543    1               1258999999 5889998888766653211    


Q ss_pred             EEEEceeeEeecCCCCceeeEEEEecccccccc----------c-hhHHHHHHHHhcccCcCeEEE
Q psy14674        130 TILKGKVEEVELPFGIQKVDIIISEWMGYCLFY----------E-SMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       130 ~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~----------e-~~l~~~l~~~~r~LkpgG~li  184 (519)
                      .+..++....... ...+||+|++++....-..          . ..--.++..+.+.|+|||++.
T Consensus       240 ~~~~~~~l~~d~~-~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~a  304 (524)
T d2ar0a1         240 AIRLGNTLGSDGE-NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA  304 (524)
T ss_dssp             SEEESCTTSHHHH-TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhhhhhhhhhccc-ccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEE
Confidence            1222222111100 1257999999985321110          0 111235677778999998654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.31  E-value=0.0056  Score=52.94  Aligned_cols=99  Identities=17%  Similarity=0.233  Sum_probs=62.3

Q ss_pred             HHHhcCCCCCCCEEEEECCccc-HHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----e
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTG-ILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----E  140 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG-~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~  140 (519)
                      +++....+.+|.+||-+|||.- .++..++++ |+.+|+++|.+ .-++.|++.    |..   .++..+-++.     .
T Consensus        19 a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~---~~i~~~~~~~~~~i~~   91 (174)
T d1f8fa2          19 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKE   91 (174)
T ss_dssp             HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe---EEEeCCCcCHHHHHHH
Confidence            4455567899999999999843 445555554 88899999998 467777653    432   3443322222     1


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      +..  +.+|+|+-..-     .    ...++...++++|+|.++.
T Consensus        92 ~t~--gg~D~vid~~G-----~----~~~~~~~~~~~~~~G~i~~  125 (174)
T d1f8fa2          92 ITD--GGVNFALESTG-----S----PEILKQGVDALGILGKIAV  125 (174)
T ss_dssp             HTT--SCEEEEEECSC-----C----HHHHHHHHHTEEEEEEEEE
T ss_pred             HcC--CCCcEEEEcCC-----c----HHHHHHHHhcccCceEEEE
Confidence            222  57999875321     1    1224445589999999873

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.21  E-value=0.0024  Score=55.57  Aligned_cols=101  Identities=18%  Similarity=0.148  Sum_probs=63.1

Q ss_pred             HHHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE-e----e
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE-V----E  140 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~-~----~  140 (519)
                      ++.....+.+|.+||-+|||. |.++..++++ |+++|+++|.+ +-++.|++    .|..   .++...-.+ .    .
T Consensus        19 a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~~   91 (174)
T d1e3ia2          19 AAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVI   91 (174)
T ss_dssp             HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHH
T ss_pred             HHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCC---cccCCccchhhhhhhH
Confidence            344557789999999999997 7888877776 88899999999 45666655    4433   223211111 0    0


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcC-eEEEc
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATN-GLLFP  185 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~Lkpg-G~lip  185 (519)
                      .....+.+|+++-..     ..    +..+....+.|++| |.++.
T Consensus        92 ~~~~~~G~d~vie~~-----G~----~~~~~~a~~~~~~g~G~~v~  128 (174)
T d1e3ia2          92 TELTAGGVDYSLDCA-----GT----AQTLKAAVDCTVLGWGSCTV  128 (174)
T ss_dssp             HHHHTSCBSEEEESS-----CC----HHHHHHHHHTBCTTTCEEEE
T ss_pred             hhhhcCCCcEEEEec-----cc----chHHHHHHHHhhcCCeEEEe
Confidence            000115789996522     11    22344555788996 88873

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.03  E-value=0.0021  Score=55.40  Aligned_cols=95  Identities=19%  Similarity=0.142  Sum_probs=58.4

Q ss_pred             CCCCCCCEEEEECCc-ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEc-eeeEe-ecCCCCcee
Q psy14674         74 KHLFKGKIVLDIGCG-TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG-KVEEV-ELPFGIQKV  148 (519)
Q Consensus        74 ~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~-d~~~~-~~~~~~~~~  148 (519)
                      ..+.+|.+||-+|+| .|.++..+++. |+ +|+++|.+ +-++.|++.    |..   .++.. +-.+. ...  .+.+
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~--~~~~   92 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKY--FDTF   92 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHS--CSCE
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc----CCc---EEeeccchHHHHHhh--hccc
Confidence            578899999999998 56666677665 76 89999999 577777663    432   22321 11111 111  1679


Q ss_pred             eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      |+|+.... ...  ...    +....+.|+|+|.++.
T Consensus        93 d~vi~~~~-~~~--~~~----~~~~~~~l~~~G~iv~  122 (168)
T d1piwa2          93 DLIVVCAS-SLT--DID----FNIMPKAMKVGGRIVS  122 (168)
T ss_dssp             EEEEECCS-CST--TCC----TTTGGGGEEEEEEEEE
T ss_pred             ceEEEEec-CCc--cch----HHHHHHHhhccceEEE
Confidence            98875321 111  001    1223478999999874

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.94  E-value=0.0029  Score=54.90  Aligned_cols=50  Identities=22%  Similarity=0.335  Sum_probs=38.3

Q ss_pred             HHHhcCCCCCCCEEEEECCccc-HHHHHHHHc-CCCEEEEEech-HHHHHHHH
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTG-ILSMFAAKS-GAARVIGIECS-NIVEYAKE  118 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG-~ls~~la~~-g~~~V~gvD~s-~~~~~A~~  118 (519)
                      ++.+...+.+|.+||-+|||.. .++..++++ |+.+|+++|.+ +-++.|++
T Consensus        18 a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          18 AAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            4445677999999999999854 445555554 88899999999 57777765

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.007  Score=57.90  Aligned_cols=59  Identities=19%  Similarity=0.151  Sum_probs=47.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV  139 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~  139 (519)
                      ..+..|||||.|.|.++..+.++ ++++|+++|++ .+++..++...    .++++++++|+..+
T Consensus        42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTTCH
T ss_pred             cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchhhc
Confidence            35779999999999999999876 46799999999 58888776643    24589999998654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0064  Score=52.27  Aligned_cols=97  Identities=23%  Similarity=0.152  Sum_probs=58.4

Q ss_pred             CCCCCCCEEEEECCccc-HHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-----cC-CC
Q psy14674         74 KHLFKGKIVLDIGCGTG-ILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-----LP-FG  144 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG-~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-----~~-~~  144 (519)
                      ..+.++.+||-+|||.. .++..++++ |+.+|+++|.+ .-++.|++    .|..   .++..+-++..     +. ..
T Consensus        22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~---~~~~~~~~~~~~~~~~~~~~~   94 (171)
T d1pl8a2          22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQL   94 (171)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHHH
T ss_pred             hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCc---ccccccccccccccccccccC
Confidence            46788999999999864 455555554 88899999999 46777665    3432   22222111110     00 00


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ...+|+|+-..-     .    +..++...+++++||.++.-
T Consensus        95 g~g~Dvvid~~G-----~----~~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2          95 GCKPEVTIECTG-----A----EASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             TSCCSEEEECSC-----C----HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCCceEEEeccC-----C----chhHHHHHHHhcCCCEEEEE
Confidence            146899876321     1    12344455789999988743

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.35  E-value=0.012  Score=50.60  Aligned_cols=95  Identities=18%  Similarity=0.205  Sum_probs=58.5

Q ss_pred             CCCCCCCEEEEECCccc-HHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe----ecCCCCc
Q psy14674         74 KHLFKGKIVLDIGCGTG-ILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV----ELPFGIQ  146 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG-~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~  146 (519)
                      ..+.+|.+||-+|+|.. .++..+++ .|+.+|+++|.+ +-++.+++    .+..   .++..+-+..    .... ..
T Consensus        28 ~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~---~~i~~~~~~~~~~~~~~~-~~   99 (172)
T d1h2ba2          28 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD---HVVDARRDPVKQVMELTR-GR   99 (172)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS---EEEETTSCHHHHHHHHTT-TC
T ss_pred             hccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccc---eeecCcccHHHHHHHhhC-CC
Confidence            35678999999999864 44455555 488899999999 46666664    3432   3343321111    1111 14


Q ss_pred             eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .+|+|+-..-     .    ...++...+.|++||.++.
T Consensus       100 g~d~vid~~g-----~----~~~~~~a~~~l~~~G~iv~  129 (172)
T d1h2ba2         100 GVNVAMDFVG-----S----QATVDYTPYLLGRMGRLII  129 (172)
T ss_dssp             CEEEEEESSC-----C----HHHHHHGGGGEEEEEEEEE
T ss_pred             CceEEEEecC-----c----chHHHHHHHHHhCCCEEEE
Confidence            6999875332     1    1224555689999999884

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.16  E-value=0.012  Score=50.20  Aligned_cols=96  Identities=27%  Similarity=0.253  Sum_probs=57.3

Q ss_pred             CCCCCCCEEEEECCc-ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee-eEe-----ecC-C
Q psy14674         74 KHLFKGKIVLDIGCG-TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV-EEV-----ELP-F  143 (519)
Q Consensus        74 ~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~-~~~-----~~~-~  143 (519)
                      ..+.+|.+||-+||| .|.++..++++ |+ +|+++|.+ +-++.|++.    +..  ..+..... .+.     .+. .
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~----ga~--~~~~~~~~~~~~~~~~~~~~~~   94 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----GAD--VTLVVDPAKEEESSIIERIRSA   94 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TCS--EEEECCTTTSCHHHHHHHHHHH
T ss_pred             hCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc----CCc--EEEeccccccccchhhhhhhcc
Confidence            467889999999998 45666666665 66 99999999 577777663    322  22221111 000     000 0


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ..+.+|+|+-..-     .    +..+....++|+|+|.++.
T Consensus        95 ~g~g~D~vid~~g-----~----~~~~~~a~~~~~~~G~iv~  127 (170)
T d1e3ja2          95 IGDLPNVTIDCSG-----N----EKCITIGINITRTGGTLML  127 (170)
T ss_dssp             SSSCCSEEEECSC-----C----HHHHHHHHHHSCTTCEEEE
T ss_pred             cccCCceeeecCC-----C----hHHHHHHHHHHhcCCceEE
Confidence            0156898875321     1    1224444578999999884

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.07  E-value=0.027  Score=48.55  Aligned_cols=51  Identities=25%  Similarity=0.404  Sum_probs=39.2

Q ss_pred             HHHhcCCCCCCCEEEEECCccc-HHHHHHHHc-CCCEEEEEech-HHHHHHHHH
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTG-ILSMFAAKS-GAARVIGIECS-NIVEYAKEI  119 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG-~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~  119 (519)
                      ++.....+.+|.+||-+|||.. .++..++++ |+++|+++|.+ +-++.|++.
T Consensus        20 Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          20 AAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            4445567899999999999854 445555554 88899999999 688888875

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.015  Score=50.00  Aligned_cols=98  Identities=19%  Similarity=0.320  Sum_probs=59.9

Q ss_pred             HHHhcCCCCCCCEEEEECC--cccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEc---eeeE-e-
Q psy14674         69 SMYHNKHLFKGKIVLDIGC--GTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG---KVEE-V-  139 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~---d~~~-~-  139 (519)
                      ++.....+.+|.+||-.|+  |.|.++..+|+. |+ +|++++.+ +-.+.+++    .|...   ++.-   |..+ + 
T Consensus        19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~----~Ga~~---vi~~~~~~~~~~i~   90 (174)
T d1yb5a2          19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAHE---VFNHREVNYIDKIK   90 (174)
T ss_dssp             HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCSE---EEETTSTTHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccc----cCccc---ccccccccHHHHhh
Confidence            4445567889999999997  356677777776 66 89999877 45555543    55432   2221   1111 0 


Q ss_pred             ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        140 ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       140 ~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ... ..+.+|+|+...-      .    ..+....+.|+|+|.++.
T Consensus        91 ~~t-~~~g~d~v~d~~g------~----~~~~~~~~~l~~~G~iv~  125 (174)
T d1yb5a2          91 KYV-GEKGIDIIIEMLA------N----VNLSKDLSLLSHGGRVIV  125 (174)
T ss_dssp             HHH-CTTCEEEEEESCH------H----HHHHHHHHHEEEEEEEEE
T ss_pred             hhh-ccCCceEEeeccc------H----HHHHHHHhccCCCCEEEE
Confidence            011 1257999986321      1    124444578999999884

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.60  E-value=0.0088  Score=51.14  Aligned_cols=96  Identities=19%  Similarity=0.195  Sum_probs=60.2

Q ss_pred             CCCEEEEECCcc-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674         78 KGKIVLDIGCGT-GILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE  154 (519)
Q Consensus        78 ~~~~VLDiGcGt-G~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~  154 (519)
                      ++.+|+-||+|. |..+...|+ .|+ +|+++|.+ +.++..+.....     +++....+-+.+.-..  ...|+||..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~--~~aDivI~a  102 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAV--AEADLLIGA  102 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHH--HTCSEEEEC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhh--ccCcEEEEe
Confidence            467999999996 455555444 477 99999999 677666655433     2455554443332111  468999996


Q ss_pred             ccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        155 WMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      ..   ........-+-+++-+.+|||..++
T Consensus       103 al---ipG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         103 VL---VPGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             CC---CTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             ee---cCCcccCeeecHHHHhhcCCCcEEE
Confidence            65   2222222223344558899999887

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.56  E-value=0.028  Score=47.85  Aligned_cols=97  Identities=24%  Similarity=0.303  Sum_probs=59.1

Q ss_pred             cCCCCCCCEEEEECCc--ccHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCC
Q psy14674         73 NKHLFKGKIVLDIGCG--TGILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPF  143 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcG--tG~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~  143 (519)
                      ...+.++.+||-+|||  .|.++..+++ .|..+|+++|.+ +-++.+++.    |..   .++..+-.+.     ... 
T Consensus        22 ~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~~-   93 (170)
T d1jvba2          22 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRIT-   93 (170)
T ss_dssp             HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHT-
T ss_pred             HhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc---eeeccCCcCHHHHHHHHh-
Confidence            3578899999999974  4455555555 487899999999 466666653    432   2333322221     011 


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ..+.+|+|+....     .    ...++...+.|+|||.++.-
T Consensus        94 ~~~~~d~vid~~g-----~----~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          94 ESKGVDAVIDLNN-----S----EKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             TTSCEEEEEESCC-----C----HHHHTTGGGGEEEEEEEEEC
T ss_pred             hcccchhhhcccc-----c----chHHHhhhhhcccCCEEEEe
Confidence            1156999876332     1    12234445899999998733

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=93.95  E-value=0.049  Score=49.59  Aligned_cols=122  Identities=13%  Similarity=0.109  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-----------------------------------------
Q psy14674         63 TMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGA-----------------------------------------  101 (519)
Q Consensus        63 ~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~-----------------------------------------  101 (519)
                      ...+..++. ...-..+..++|--||+|.+.+.+|-...                                         
T Consensus        36 a~il~~al~-l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~  114 (249)
T d1o9ga_          36 TEIFQRALA-RLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQ  114 (249)
T ss_dssp             HHHHHHHHH-TSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhh-hhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhcccccc
Confidence            344444443 33445566899999999998876664210                                         


Q ss_pred             CEEEEEech-HHHHHH---HHHHHHCCCCCcEEEEEceeeEeecC---CCCceeeEEEEecc-ccccccc-----hhHHH
Q psy14674        102 ARVIGIECS-NIVEYA---KEIVDKNNLSDVVTILKGKVEEVELP---FGIQKVDIIISEWM-GYCLFYE-----SMLDT  168 (519)
Q Consensus       102 ~~V~gvD~s-~~~~~A---~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~~~D~Ivs~~~-~~~l~~e-----~~l~~  168 (519)
                      .+++|.|++ .+++.|   +++++..|+.+.|++.+.|+.+....   ......++||+|+. |.-+..+     ..+..
T Consensus       115 ~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~  194 (249)
T d1o9ga_         115 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAG  194 (249)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred             CCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHH
Confidence            135788888 577777   56889999999999999998654210   00156799999985 3333211     23455


Q ss_pred             HHHHHhcccCcCeEEEc
Q psy14674        169 VLYARDKWLATNGLLFP  185 (519)
Q Consensus       169 ~l~~~~r~LkpgG~lip  185 (519)
                      +...+.+.|.....++.
T Consensus       195 ~~~~l~~~~p~~s~~~i  211 (249)
T d1o9ga_         195 LLRSLASALPAHAVIAV  211 (249)
T ss_dssp             HHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHccCCCCcEEEE
Confidence            56666676755444443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.92  E-value=0.017  Score=49.18  Aligned_cols=94  Identities=15%  Similarity=0.133  Sum_probs=54.8

Q ss_pred             CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--c-CCCCce
Q psy14674         74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--L-PFGIQK  147 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~-~~~~~~  147 (519)
                      ..+.+|.+||-+|+|. |.++..+++. | .+|+++|.+ +-++.+++    .|..   .++...-.+..  . ....+.
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~~~g~   94 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARK----LGAS---LTVNARQEDPVEAIQRDIGGA   94 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHSSE
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhc----cCcc---ccccccchhHHHHHHHhhcCC
Confidence            4678899999999975 4566666665 6 599999999 46666654    4432   33332221110  0 000133


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .|+|++...          ...+....++|+|||.++.
T Consensus        95 ~~~i~~~~~----------~~~~~~~~~~l~~~G~iv~  122 (166)
T d1llua2          95 HGVLVTAVS----------NSAFGQAIGMARRGGTIAL  122 (166)
T ss_dssp             EEEEECCSC----------HHHHHHHHTTEEEEEEEEE
T ss_pred             ccccccccc----------chHHHHHHHHhcCCcEEEE
Confidence            445443221          1124445589999999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.71  E-value=0.062  Score=45.55  Aligned_cols=96  Identities=20%  Similarity=0.209  Sum_probs=57.5

Q ss_pred             cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674         73 NKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD  149 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D  149 (519)
                      ...+.+|.+||-+|||. |.++..++++ |+ +++++|.+ +-.+.+++.    |..   .++...-.+.... ..+.+|
T Consensus        25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~l----Gad---~~i~~~~~~~~~~-~~~~~D   95 (168)
T d1uufa2          25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAA-HLKSFD   95 (168)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHT-TTTCEE
T ss_pred             HhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhcc----CCc---EEEECchhhHHHH-hcCCCc
Confidence            46788999999999874 5566666665 76 77788888 555666543    332   2332221111111 125799


Q ss_pred             EEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      +++-..-     ....+    ....++|+++|.++.-
T Consensus        96 ~vid~~g-----~~~~~----~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2          96 FILNTVA-----APHNL----DDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             EEEECCS-----SCCCH----HHHHTTEEEEEEEEEC
T ss_pred             eeeeeee-----cchhH----HHHHHHHhcCCEEEEe
Confidence            9876432     11222    2334799999998843

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=93.53  E-value=0.042  Score=49.68  Aligned_cols=45  Identities=27%  Similarity=0.373  Sum_probs=40.5

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHH
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVD  121 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~  121 (519)
                      -.+|..|||--||+|..+..+.+.|. +.+|+|++ +.++.|++++.
T Consensus       210 s~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         210 SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence            36789999999999999999998875 99999999 69999999875

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=93.16  E-value=0.072  Score=51.10  Aligned_cols=105  Identities=15%  Similarity=0.210  Sum_probs=59.3

Q ss_pred             CEEEEECCcccHHHHHHHHc-----------------CCCEEEEEech--HHHHHHHHHHHHCCCCCc--EEEEEceeeE
Q psy14674         80 KIVLDIGCGTGILSMFAAKS-----------------GAARVIGIECS--NIVEYAKEIVDKNNLSDV--VTILKGKVEE  138 (519)
Q Consensus        80 ~~VLDiGcGtG~ls~~la~~-----------------g~~~V~gvD~s--~~~~~A~~~~~~~~~~~~--i~~~~~d~~~  138 (519)
                      -+|.|+||.+|..++.+...                 +.-+|+--|+.  +.-...+..-........  +.-+-+.+-.
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~  132 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence            57999999999876543321                 11145555544  233333322111111111  1112222222


Q ss_pred             eecCCCCceeeEEEEecccccccc------------------------------chhHHHHHHHHhcccCcCeEEEcc
Q psy14674        139 VELPFGIQKVDIIISEWMGYCLFY------------------------------ESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       139 ~~~~~~~~~~D~Ivs~~~~~~l~~------------------------------e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      =-+|.  ++.|+++|....|.|..                              ..++..+|.++.+-|+|||+++..
T Consensus       133 rLfP~--~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~  208 (359)
T d1m6ex_         133 RLFPR--NTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             CCSCT--TCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hcCCC--CceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            13455  88999999776665531                              135678999999999999999854

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=92.99  E-value=0.033  Score=52.16  Aligned_cols=48  Identities=21%  Similarity=0.194  Sum_probs=41.9

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCC
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNN  124 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~  124 (519)
                      -.+|..|||.-||+|..+..+.+.|. +.+|+|++ +.++.|++++..+.
T Consensus       248 s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         248 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSC
T ss_pred             ccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhcc
Confidence            46889999999999999999999875 99999999 69999988876543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.86  E-value=0.11  Score=44.14  Aligned_cols=98  Identities=17%  Similarity=0.206  Sum_probs=60.3

Q ss_pred             HHHhcCCCCCCCEEEEECCcc--cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGT--GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----  139 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGt--G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----  139 (519)
                      ++.+...+.+|++||-.|+|.  |.++..+|+. |+ +|++++.| +-.+.+++    .|-.   .++.-+-+++     
T Consensus        19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~----lGa~---~vi~~~~~d~~~~v~   90 (179)
T d1qora2          19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK----AGAW---QVINYREEDLVERLK   90 (179)
T ss_dssp             HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHh----cCCe---EEEECCCCCHHHHHH
Confidence            444556788999999997776  4566666666 66 99999999 56666664    3432   3333222222     


Q ss_pred             ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        140 ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       140 ~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .+. ....+|+|+...-+      +.    +......|+++|.++.
T Consensus        91 ~~t-~g~g~d~v~d~~g~------~~----~~~~~~~l~~~G~~v~  125 (179)
T d1qora2          91 EIT-GGKKVRVVYDSVGR------DT----WERSLDCLQRRGLMVS  125 (179)
T ss_dssp             HHT-TTCCEEEEEECSCG------GG----HHHHHHTEEEEEEEEE
T ss_pred             HHh-CCCCeEEEEeCccH------HH----HHHHHHHHhcCCeeee
Confidence            111 12679988763321      11    2334578999998763

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=92.49  E-value=0.35  Score=44.89  Aligned_cols=127  Identities=10%  Similarity=0.041  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCC--CcEEEEEceeeE
Q psy14674         61 VRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLS--DVVTILKGKVEE  138 (519)
Q Consensus        61 ~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~--~~i~~~~~d~~~  138 (519)
                      .|+..+.+.+..... .....|+.+|||-=.-+..+...+..+++=||..++++.-++.+.+++..  .+..++..|+.+
T Consensus        73 ~Rtr~~D~~~~~~~~-~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~  151 (297)
T d2uyoa1          73 VRTNFFDTYFNNAVI-DGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ  151 (297)
T ss_dssp             HHHHHHHHHHHHHHH-TTCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHh-hCCCeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccc
Confidence            455555444433222 22345667999987666555333344777777777888888888877653  456777777664


Q ss_pred             e---ecC---CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        139 V---ELP---FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       139 ~---~~~---~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                      -   .+.   ...+..-+++++.+.+++.. .....++..+..+..||+.++.+...
T Consensus       152 ~~~~~L~~~g~d~~~ptl~i~EGvl~YL~~-~~~~~ll~~i~~~~~~GS~l~~d~~~  207 (297)
T d2uyoa1         152 DWPPALRSAGFDPSARTAWLAEGLLMYLPA-TAQDGLFTEIGGLSAVGSRIAVETSP  207 (297)
T ss_dssp             CHHHHHHHTTCCTTSCEEEEECSCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             hHHHHHHhcCCCCCCCEEEEEccccccCCH-HHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            1   111   01145678888888776654 45788899999999999999987654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.39  E-value=0.073  Score=48.64  Aligned_cols=47  Identities=23%  Similarity=0.318  Sum_probs=41.9

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN  123 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~  123 (519)
                      -.+|..|||--||+|..+..+.+.|. +.+|+|++ +..+.|+++++..
T Consensus       205 s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         205 SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred             cCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            36899999999999999999998875 99999999 6999999998763

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.15  Score=46.37  Aligned_cols=78  Identities=17%  Similarity=0.256  Sum_probs=59.8

Q ss_pred             CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCC
Q psy14674         77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFG  144 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~  144 (519)
                      .+|++||--|+++|+   ++..+++.|+ +|+.++.+ +-++.+.+.++..+...++.++++|+.+-.        ....
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            579999999999995   5667778888 89999999 577777777777777777899999987631        1111


Q ss_pred             CceeeEEEEec
Q psy14674        145 IQKVDIIISEW  155 (519)
Q Consensus       145 ~~~~D~Ivs~~  155 (519)
                      .++.|++|.+.
T Consensus        87 ~g~iD~lVnnA   97 (257)
T d1xg5a_          87 HSGVDICINNA   97 (257)
T ss_dssp             HCCCSEEEECC
T ss_pred             cCCCCEEEecc
Confidence            25799999865

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.03  E-value=0.029  Score=47.47  Aligned_cols=44  Identities=27%  Similarity=0.299  Sum_probs=32.1

Q ss_pred             CCCCCCCEEEEECCccc-HHHHHHHHc-CCCEEEEEech-HHHHHHHH
Q psy14674         74 KHLFKGKIVLDIGCGTG-ILSMFAAKS-GAARVIGIECS-NIVEYAKE  118 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG-~ls~~la~~-g~~~V~gvD~s-~~~~~A~~  118 (519)
                      ..+.++.+||-.|||.- .++..++++ |+ +|+++|.+ +-++.+++
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhh
Confidence            45788999999999864 455555655 55 89999998 45665554

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=91.98  E-value=0.067  Score=50.02  Aligned_cols=67  Identities=21%  Similarity=0.198  Sum_probs=50.9

Q ss_pred             EEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         81 IVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        81 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      +|||+-||.|.+++-+.++|...+.++|+++ +++..+.+.     ++  .++.+|+.++.... ...+|+++..+
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~-----~~--~~~~~Di~~~~~~~-~~~~dll~~g~   69 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----SA--KLIKGDISKISSDE-FPKCDGIIGGP   69 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC-----CS--EEEESCTTTSCGGG-SCCCSEEEECC
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----CC--CCccCChhhCCHhH-cccccEEeecc
Confidence            7999999999999999888997788999994 666555542     22  56789988874332 24789999854

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.42  E-value=0.1  Score=44.58  Aligned_cols=98  Identities=21%  Similarity=0.227  Sum_probs=57.5

Q ss_pred             HHHhcCCCCCCCEEEEECC--cccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----
Q psy14674         69 SMYHNKHLFKGKIVLDIGC--GTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----  139 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----  139 (519)
                      ++.+...+.+|++||-.|.  |.|.++..+|+. |+ +|+++.-+ +-.+.++    +.|..   .++..+-.++     
T Consensus        16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~----~~Ga~---~vi~~~~~~~~~~v~   87 (183)
T d1pqwa_          16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS----RLGVE---YVGDSRSVDFADEIL   87 (183)
T ss_dssp             HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH----TTCCS---EEEETTCSTHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccc----ccccc---ccccCCccCHHHHHH
Confidence            4445567889999999884  345566666665 66 78877766 4455544    45543   2232221111     


Q ss_pred             ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        140 ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       140 ~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      ... ....+|+|+...-     . ..    ++...++|+++|+++.
T Consensus        88 ~~t-~~~g~d~v~d~~g-----~-~~----~~~~~~~l~~~G~~v~  122 (183)
T d1pqwa_          88 ELT-DGYGVDVVLNSLA-----G-EA----IQRGVQILAPGGRFIE  122 (183)
T ss_dssp             HHT-TTCCEEEEEECCC-----T-HH----HHHHHHTEEEEEEEEE
T ss_pred             HHh-CCCCEEEEEeccc-----c-hH----HHHHHHHhcCCCEEEE
Confidence            111 1257999986432     1 12    3344579999999884

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=91.15  E-value=0.3  Score=41.55  Aligned_cols=99  Identities=15%  Similarity=0.073  Sum_probs=60.5

Q ss_pred             HHHhcCCCCCCCEEEEECCccc--HHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe----e
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTG--ILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV----E  140 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG--~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~----~  140 (519)
                      ++.+...+.+|++||-.|+|.|  ..+..+++. |+ +|+++.-+ +-.+.+++    .|..   .++.-+-++.    .
T Consensus        20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~----~Ga~---~vi~~~~~~~~~~~~   91 (182)
T d1v3va2          20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFD---AAFNYKTVNSLEEAL   91 (182)
T ss_dssp             HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTSCSCHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHh----hhhh---hhcccccccHHHHHH
Confidence            4555677889999998888765  455566666 65 99999988 45555544    4543   2233222211    0


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      .....+.+|+|+-..-          ...+++..++|+|+|.++.
T Consensus        92 ~~~~~~Gvd~v~D~vG----------~~~~~~~~~~l~~~G~~v~  126 (182)
T d1v3va2          92 KKASPDGYDCYFDNVG----------GEFLNTVLSQMKDFGKIAI  126 (182)
T ss_dssp             HHHCTTCEEEEEESSC----------HHHHHHHGGGEEEEEEEEE
T ss_pred             HHhhcCCCceeEEecC----------chhhhhhhhhccCCCeEEe
Confidence            0011157999975321          1124556689999998883

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=90.52  E-value=0.14  Score=48.03  Aligned_cols=70  Identities=20%  Similarity=0.226  Sum_probs=52.8

Q ss_pred             CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674         77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW  155 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~  155 (519)
                      ..+.+|||+-||-|.+++.+.++|..-|.++|++ .+++..+.+...        ..++|+.++.... ...+|+++..+
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~~-~~~~Dll~ggp   79 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEKT-IPDHDILCAGF   79 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGGG-SCCCSEEEEEC
T ss_pred             CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchhh-cceeeeeeccc
Confidence            3568999999999999999999998778889999 477777766532        1247777764321 14689999865

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.54  E-value=0.2  Score=43.12  Aligned_cols=98  Identities=16%  Similarity=0.180  Sum_probs=57.2

Q ss_pred             HHhcCCCCCC--CEEEEECC--cccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe----
Q psy14674         70 MYHNKHLFKG--KIVLDIGC--GTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV----  139 (519)
Q Consensus        70 i~~~~~~~~~--~~VLDiGc--GtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~----  139 (519)
                      +.....+.+|  +.||-.|+  |.|..+..+|+. |+..|+++..+ +....+   .+..|..   .++...-+++    
T Consensus        20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l---~~~~gad---~vi~~~~~~~~~~~   93 (187)
T d1vj1a2          20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFL---TSELGFD---AAVNYKTGNVAEQL   93 (187)
T ss_dssp             HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHH---HHHSCCS---EEEETTSSCHHHHH
T ss_pred             HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhh---hhcccce---EEeeccchhHHHHH
Confidence            3333456665  78999884  567788888885 88888888777 432222   2234433   2333221111    


Q ss_pred             -ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        140 -ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       140 -~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                       ....  +.+|+|+-..-          ...++...+.|+++|+++.
T Consensus        94 ~~~~~--~GvDvv~D~vG----------g~~~~~~~~~l~~~G~iv~  128 (187)
T d1vj1a2          94 REACP--GGVDVYFDNVG----------GDISNTVISQMNENSHIIL  128 (187)
T ss_dssp             HHHCT--TCEEEEEESSC----------HHHHHHHHTTEEEEEEEEE
T ss_pred             HHHhc--cCceEEEecCC----------chhHHHHhhhccccccEEE
Confidence             1111  57999975321          1124455689999999873

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.29  E-value=0.3  Score=41.12  Aligned_cols=100  Identities=18%  Similarity=0.201  Sum_probs=57.8

Q ss_pred             HHHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEce-eeE-e---e
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK-VEE-V---E  140 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d-~~~-~---~  140 (519)
                      ++.+...+.+|.+||-.|||. |.++..++++ |++.|+++|.+ +-.+.+++.    |..   .++..+ -.+ .   .
T Consensus        19 al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~---~~i~~~~~~~~~~~~~   91 (176)
T d2fzwa2          19 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVL   91 (176)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHH
T ss_pred             HHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc---EEEeCCchhhHHHHHH
Confidence            344556789999999999983 2344444544 88899999999 467776653    332   222211 101 0   0


Q ss_pred             cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                      .....+.+|+|+-..-     .    ...++....++++||.++
T Consensus        92 ~~~~~~g~D~vid~~G-----~----~~~~~~~~~~~~~g~~~~  126 (176)
T d2fzwa2          92 IEMTDGGVDYSFECIG-----N----VKVMRAALEACHKGWGVS  126 (176)
T ss_dssp             HHHTTSCBSEEEECSC-----C----HHHHHHHHHTBCTTTCEE
T ss_pred             HHHcCCCCcEeeecCC-----C----HHHHHHHHHhhcCCceeE
Confidence            0001156999976431     1    122444557888886554

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=88.53  E-value=0.63  Score=38.63  Aligned_cols=84  Identities=20%  Similarity=0.149  Sum_probs=53.4

Q ss_pred             EEEEECCcc--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc
Q psy14674         81 IVLDIGCGT--GILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG  157 (519)
Q Consensus        81 ~VLDiGcGt--G~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~  157 (519)
                      +|.=||+|.  +.++..+.++|. +|++.|.+ +.++.|++    .+.-+   ....+.+   .-   ...|+|+.... 
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~----~~~~~---~~~~~~~---~~---~~~DiIilavp-   66 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVE----RQLVD---EAGQDLS---LL---QTAKIIFLCTP-   66 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTSCS---EEESCGG---GG---TTCSEEEECSC-
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHH----hhccc---eeeeecc---cc---cccccccccCc-
Confidence            577788883  356667777776 99999999 56666554    34322   1111221   11   56899976332 


Q ss_pred             cccccchhHHHHHHHHhcccCcCeEEE
Q psy14674        158 YCLFYESMLDTVLYARDKWLATNGLLF  184 (519)
Q Consensus       158 ~~l~~e~~l~~~l~~~~r~LkpgG~li  184 (519)
                           ....+.+++++...|+++.+++
T Consensus        67 -----~~~~~~vl~~l~~~l~~~~iv~   88 (165)
T d2f1ka2          67 -----IQLILPTLEKLIPHLSPTAIVT   88 (165)
T ss_dssp             -----HHHHHHHHHHHGGGSCTTCEEE
T ss_pred             -----Hhhhhhhhhhhhhhccccccee
Confidence                 2356678888888888888665

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.30  E-value=0.42  Score=40.70  Aligned_cols=103  Identities=15%  Similarity=0.072  Sum_probs=58.9

Q ss_pred             HHHhcCCCCCCCEEEEECCccc--HHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCC
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTG--ILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFG  144 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG--~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~  144 (519)
                      ++.......+|.+||--|++.|  ..+..+++. |+ +|+++--+ +-.+.+++    .|-...+.. ..+..+......
T Consensus        22 ~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~----lGa~~vi~~-~~~~~~~~~~~~   95 (176)
T d1xa0a2          22 RLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAKEVLAR-EDVMAERIRPLD   95 (176)
T ss_dssp             HHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCSEEEEC-C---------CC
T ss_pred             HHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHh----cccceeeec-chhHHHHHHHhh
Confidence            3444566777899999997655  566677765 66 89998887 56666654    343322211 111111111112


Q ss_pred             CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      .+.+|+|+-..-+      ..    +....+.|+|||+++.--
T Consensus        96 ~~gvD~vid~vgg------~~----~~~~l~~l~~~Griv~~G  128 (176)
T d1xa0a2          96 KQRWAAAVDPVGG------RT----LATVLSRMRYGGAVAVSG  128 (176)
T ss_dssp             SCCEEEEEECSTT------TT----HHHHHHTEEEEEEEEECS
T ss_pred             ccCcCEEEEcCCc------hh----HHHHHHHhCCCceEEEee
Confidence            2689988764321      12    333348999999998433

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.08  E-value=0.43  Score=40.14  Aligned_cols=50  Identities=22%  Similarity=0.268  Sum_probs=37.1

Q ss_pred             HHHhcCCCCCCCEEEEECCcccHH-HH-HHHHcCCCEEEEEech-HHHHHHHH
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGIL-SM-FAAKSGAARVIGIECS-NIVEYAKE  118 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~l-s~-~la~~g~~~V~gvD~s-~~~~~A~~  118 (519)
                      ++.....+++|.+||-+|+|.+.+ +. .++..++.+|+++|.+ +-++.|++
T Consensus        19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            455557889999999999998543 33 3444588899999999 46666665

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.92  E-value=0.096  Score=49.37  Aligned_cols=71  Identities=20%  Similarity=0.126  Sum_probs=49.2

Q ss_pred             CCEEEEECCcccHHHHHHHHcCCC--EEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCC-CceeeEEEEe
Q psy14674         79 GKIVLDIGCGTGILSMFAAKSGAA--RVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFG-IQKVDIIISE  154 (519)
Q Consensus        79 ~~~VLDiGcGtG~ls~~la~~g~~--~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~D~Ivs~  154 (519)
                      ..+|+|+-||.|.+++.+.++|..  -|.++|+.+ +++..+.+..     + ..++.+|+.++....- ...+|+++..
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~-----~-~~~~~~di~~~~~~~~~~~~~Dll~gg   75 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----H-TQLLAKTIEGITLEEFDRLSFDMILMS   75 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----T-SCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC-----C-CCcccCchhhCCHhHcCCCCccEEEee
Confidence            357999999999999888888863  378999994 6666665532     1 3566778876632110 0368999985


Q ss_pred             c
Q psy14674        155 W  155 (519)
Q Consensus       155 ~  155 (519)
                      +
T Consensus        76 p   76 (343)
T d1g55a_          76 P   76 (343)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=87.53  E-value=0.58  Score=42.30  Aligned_cols=78  Identities=21%  Similarity=0.242  Sum_probs=56.9

Q ss_pred             CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CCC
Q psy14674         77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PFG  144 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~  144 (519)
                      .+|+++|--|+++|+   ++..+++.|+ +|+.+|.+ +-++.+.+.+...+...++..+.+|+.+..-        ...
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   80 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence            478999999999985   6778888898 89999999 6666666655555555568889999865310        011


Q ss_pred             CceeeEEEEec
Q psy14674        145 IQKVDIIISEW  155 (519)
Q Consensus       145 ~~~~D~Ivs~~  155 (519)
                      .++.|++|.+.
T Consensus        81 ~G~iDiLVnnA   91 (258)
T d1iy8a_          81 FGRIDGFFNNA   91 (258)
T ss_dssp             HSCCSEEEECC
T ss_pred             hCCCCEEEECC
Confidence            15799999865

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=87.50  E-value=0.41  Score=41.03  Aligned_cols=106  Identities=15%  Similarity=0.091  Sum_probs=56.0

Q ss_pred             HHHhcCCCCCCCEEEEECCcc---cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--c
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGT---GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--L  141 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGt---G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~  141 (519)
                      ++.....+.+|..||-+.+|+   |..+..+|++ |+ +|+++--+ +-.+...+.+++.|....|..-..+..++.  .
T Consensus        19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v   97 (189)
T d1gu7a2          19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTI   97 (189)
T ss_dssp             HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHH
Confidence            444556788898888884444   4556666665 77 77776433 344444444555565431211111111110  0


Q ss_pred             ----CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        142 ----PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       142 ----~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                          ....+.+|+|+-. +    . .+.    +....+.|+|+|.++.
T Consensus        98 ~~~~~~~g~~vdvv~D~-v----g-~~~----~~~~~~~l~~~G~~v~  135 (189)
T d1gu7a2          98 KEWIKQSGGEAKLALNC-V----G-GKS----STGIARKLNNNGLMLT  135 (189)
T ss_dssp             HHHHHHHTCCEEEEEES-S----C-HHH----HHHHHHTSCTTCEEEE
T ss_pred             HHHHhhccCCceEEEEC-C----C-cch----hhhhhhhhcCCcEEEE
Confidence                0001468998742 2    1 112    2334578999999883

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=86.88  E-value=0.1  Score=44.84  Aligned_cols=41  Identities=24%  Similarity=0.324  Sum_probs=29.6

Q ss_pred             CCCEEEEECCccc-HHHHHHHH-cCCCEEEEEech-HHHHHHHHH
Q psy14674         78 KGKIVLDIGCGTG-ILSMFAAK-SGAARVIGIECS-NIVEYAKEI  119 (519)
Q Consensus        78 ~~~~VLDiGcGtG-~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~  119 (519)
                      ++.+||-||+|.- ..+...|. .|+ +|+++|.+ +.++..+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l   71 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESL   71 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHT
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHh
Confidence            4679999999974 44554444 477 99999999 566665543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=86.66  E-value=0.87  Score=43.87  Aligned_cols=58  Identities=14%  Similarity=0.084  Sum_probs=44.6

Q ss_pred             CCCCCEEEEECCcccHHHHHHHHc---CCCEEEEEech-HHHHHHHHHHHHCCCCC---cEEEEE
Q psy14674         76 LFKGKIVLDIGCGTGILSMFAAKS---GAARVIGIECS-NIVEYAKEIVDKNNLSD---VVTILK  133 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~ls~~la~~---g~~~V~gvD~s-~~~~~A~~~~~~~~~~~---~i~~~~  133 (519)
                      +.++..++|||+-.|..+..+++.   ...+|+++|++ ...+..+++++.++..+   ++.++.
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~  274 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG  274 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEE
Confidence            456789999999999888766543   24599999999 58899999998877543   455544

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.46  E-value=0.21  Score=42.35  Aligned_cols=92  Identities=18%  Similarity=0.199  Sum_probs=55.5

Q ss_pred             cCCCCCCCEEEEECCcc--cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee-eEeecCCCCce
Q psy14674         73 NKHLFKGKIVLDIGCGT--GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV-EEVELPFGIQK  147 (519)
Q Consensus        73 ~~~~~~~~~VLDiGcGt--G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~~  147 (519)
                      ...+.+|++||-.|++.  |.++..++++ |+ +|++++.+ +-.+.+++    .|....+.  ..+. ......   +.
T Consensus        22 ~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~----lGa~~~i~--~~~~~~~~~~~---~g   91 (171)
T d1iz0a2          22 RAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAEEAAT--YAEVPERAKAW---GG   91 (171)
T ss_dssp             HTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCSEEEE--GGGHHHHHHHT---TS
T ss_pred             HhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccc----cccceeee--hhhhhhhhhcc---cc
Confidence            35788999999998532  4566667776 66 89999988 45555554    45432111  1111 111122   57


Q ss_pred             eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674        148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP  185 (519)
Q Consensus       148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip  185 (519)
                      +|+|+- ..+     + .+    ....+.|+|+|.++.
T Consensus        92 ~D~v~d-~~G-----~-~~----~~~~~~l~~~G~~v~  118 (171)
T d1iz0a2          92 LDLVLE-VRG-----K-EV----EESLGLLAHGGRLVY  118 (171)
T ss_dssp             EEEEEE-CSC-----T-TH----HHHHTTEEEEEEEEE
T ss_pred             cccccc-ccc-----h-hH----HHHHHHHhcCCcEEE
Confidence            999875 332     1 22    333479999999873

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.98  E-value=0.65  Score=39.00  Aligned_cols=51  Identities=25%  Similarity=0.307  Sum_probs=36.6

Q ss_pred             HHHhcCCCCCCCEEEEECCcccH-HHH-HHHHcCCCEEEEEech-HHHHHHHHH
Q psy14674         69 SMYHNKHLFKGKIVLDIGCGTGI-LSM-FAAKSGAARVIGIECS-NIVEYAKEI  119 (519)
Q Consensus        69 ai~~~~~~~~~~~VLDiGcGtG~-ls~-~la~~g~~~V~gvD~s-~~~~~A~~~  119 (519)
                      ++.....+.+|.+||-+|+|.+. ++. .++..|+.+|+++|.+ +-.+.+++.
T Consensus        19 al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2          19 SAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence            44555778999999999997543 333 3444588899999999 566666653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.70  E-value=0.74  Score=39.38  Aligned_cols=78  Identities=14%  Similarity=0.127  Sum_probs=50.0

Q ss_pred             CCCCCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCcee
Q psy14674         74 KHLFKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKV  148 (519)
Q Consensus        74 ~~~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~  148 (519)
                      ....+|++||-.|++.|+   ++..+++.|+ +|+.++.+ +-++.+.+.+..+.   ++.+...|+.+.. .....+..
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~i   93 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEAVKGA   93 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHHTTTC
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHHhcCc
Confidence            456789999999998884   5667788887 89999999 55554444444322   1344445544321 11011578


Q ss_pred             eEEEEec
Q psy14674        149 DIIISEW  155 (519)
Q Consensus       149 D~Ivs~~  155 (519)
                      |++|.+.
T Consensus        94 Dilin~A  100 (191)
T d1luaa1          94 HFVFTAG  100 (191)
T ss_dssp             SEEEECC
T ss_pred             CeeeecC
Confidence            9999864

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=85.55  E-value=0.44  Score=40.11  Aligned_cols=99  Identities=15%  Similarity=0.134  Sum_probs=57.5

Q ss_pred             HHhcCCCCCCCEEEEECCcc--cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEce-e-eEeecCC
Q psy14674         70 MYHNKHLFKGKIVLDIGCGT--GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK-V-EEVELPF  143 (519)
Q Consensus        70 i~~~~~~~~~~~VLDiGcGt--G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d-~-~~~~~~~  143 (519)
                      +.......++..||--|++.  |.++..+|++ |+ +|+++.-+ +-.+.+++.    |...   ++..+ . .+.....
T Consensus        15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~l----Gad~---vi~~~~~~~~~~~~~   86 (167)
T d1tt7a2          15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GASE---VISREDVYDGTLKAL   86 (167)
T ss_dssp             HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCSE---EEEHHHHCSSCCCSS
T ss_pred             HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhh----cccc---eEeccchhchhhhcc
Confidence            44444555677788877544  4667777776 76 89999988 566666553    4321   22211 1 1111111


Q ss_pred             CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674        144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD  186 (519)
Q Consensus       144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~  186 (519)
                      ..+.+|+|+-..-+      .    .+.+..+.|+|+|.++.-
T Consensus        87 ~~~gvd~vid~vgg------~----~~~~~~~~l~~~G~iv~~  119 (167)
T d1tt7a2          87 SKQQWQGAVDPVGG------K----QLASLLSKIQYGGSVAVS  119 (167)
T ss_dssp             CCCCEEEEEESCCT------H----HHHHHHTTEEEEEEEEEC
T ss_pred             cCCCceEEEecCcH------H----HHHHHHHHhccCceEEEe
Confidence            22679998754321      1    244455899999998843

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=85.42  E-value=1  Score=40.52  Aligned_cols=76  Identities=21%  Similarity=0.316  Sum_probs=56.6

Q ss_pred             CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCC
Q psy14674         77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFG  144 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~  144 (519)
                      .+|+++|--|.++|+   ++..+++.|+ +|+.+|.+ +.++.+.+.++..+.  ++..+.+|+.+..        ....
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            579999999999885   5677888888 89999999 677777777776553  5888899886531        0111


Q ss_pred             CceeeEEEEec
Q psy14674        145 IQKVDIIISEW  155 (519)
Q Consensus       145 ~~~~D~Ivs~~  155 (519)
                      .++.|++|.+.
T Consensus        80 ~g~iDilVnna   90 (260)
T d1zema1          80 FGKIDFLFNNA   90 (260)
T ss_dssp             HSCCCEEEECC
T ss_pred             hCCCCeehhhh
Confidence            15799999754

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.17  E-value=1.1  Score=37.20  Aligned_cols=91  Identities=15%  Similarity=0.210  Sum_probs=54.6

Q ss_pred             EEEEECCcc-c-HHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674         81 IVLDIGCGT-G-ILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM  156 (519)
Q Consensus        81 ~VLDiGcGt-G-~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~  156 (519)
                      +|+=||||. | .++..+.+.| ..+|+|+|.+ +.++.|++.    +.-+   ....+...  ...  ...|+|+....
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~~---~~~~~~~~--~~~--~~~dlIila~p   71 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIID---EGTTSIAK--VED--FSPDFVMLSSP   71 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCS---EEESCGGG--GGG--TCCSEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcch---hhhhhhhh--hhc--cccccccccCC
Confidence            588899985 3 4566666666 3589999999 577776653    3322   11111111  111  35799976432


Q ss_pred             ccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674        157 GYCLFYESMLDTVLYARDKWLATNGLLFPDKAS  189 (519)
Q Consensus       157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~  189 (519)
                            ......++..+...++++..+ .+..+
T Consensus        72 ------~~~~~~vl~~l~~~~~~~~ii-~d~~s   97 (171)
T d2g5ca2          72 ------VRTFREIAKKLSYILSEDATV-TDQGS   97 (171)
T ss_dssp             ------HHHHHHHHHHHHHHSCTTCEE-EECCS
T ss_pred             ------chhhhhhhhhhhccccccccc-ccccc
Confidence                  234566777888888887654 44444

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.41  E-value=0.68  Score=42.06  Aligned_cols=104  Identities=13%  Similarity=0.045  Sum_probs=63.9

Q ss_pred             CCEE-EEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCCC
Q psy14674         79 GKIV-LDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFGI  145 (519)
Q Consensus        79 ~~~V-LDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~  145 (519)
                      |++| |-=|+++|+   ++..+++.+..+|+.++.+ +-++.+.+.++..+.  ++.++.+|+.+..        .....
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            5666 555777774   3445666544499999999 677777777776653  4788899987642        11112


Q ss_pred             ceeeEEEEecccccc-c-cc---hhHH-----------HHHHHHhcccCcCeEEE
Q psy14674        146 QKVDIIISEWMGYCL-F-YE---SMLD-----------TVLYARDKWLATNGLLF  184 (519)
Q Consensus       146 ~~~D~Ivs~~~~~~l-~-~e---~~l~-----------~~l~~~~r~LkpgG~li  184 (519)
                      ++.|++|.+.-.... . .+   ..++           .+.+++...|+++|.++
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~iv  134 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVV  134 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            589999997521111 0 00   1111           23455567788888876

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.04  E-value=0.92  Score=41.14  Aligned_cols=78  Identities=24%  Similarity=0.329  Sum_probs=58.2

Q ss_pred             CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCC-CcEEEEEceeeEee--------cCC
Q psy14674         77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS-DVVTILKGKVEEVE--------LPF  143 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~-~~i~~~~~d~~~~~--------~~~  143 (519)
                      .+|+++|--|+++|+   ++..+++.|+ +|+.+|.+ +-++.+.+.+.+.+.. .++..+.+|+.+..        ...
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            578999999999984   5667888888 89999999 6777777777766643 46899999986531        011


Q ss_pred             CCceeeEEEEec
Q psy14674        144 GIQKVDIIISEW  155 (519)
Q Consensus       144 ~~~~~D~Ivs~~  155 (519)
                      ..++.|++|.+.
T Consensus        82 ~~g~iDilvnnA   93 (272)
T d1xkqa_          82 QFGKIDVLVNNA   93 (272)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HhCCceEEEeCC
Confidence            115799999864

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.94  E-value=1.6  Score=38.78  Aligned_cols=77  Identities=21%  Similarity=0.177  Sum_probs=56.9

Q ss_pred             CCCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CC
Q psy14674         76 LFKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PF  143 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~  143 (519)
                      ...|+++|--|++.|+   ++..+++.|+ +|+.+|.+ +-++...+.+...+  .++..+.+|+.+..-        ..
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~   80 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA   80 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            3578999999999995   6778888888 89999999 66665555566554  358899999877521        01


Q ss_pred             CCceeeEEEEec
Q psy14674        144 GIQKVDIIISEW  155 (519)
Q Consensus       144 ~~~~~D~Ivs~~  155 (519)
                      ..+..|++|.+.
T Consensus        81 ~~g~idilinna   92 (244)
T d1yb1a_          81 EIGDVSILVNNA   92 (244)
T ss_dssp             HTCCCSEEEECC
T ss_pred             HcCCCceeEeec
Confidence            126799999865

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.80  E-value=0.94  Score=41.14  Aligned_cols=78  Identities=26%  Similarity=0.352  Sum_probs=57.7

Q ss_pred             CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCC-CcEEEEEceeeEee--------cCC
Q psy14674         77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS-DVVTILKGKVEEVE--------LPF  143 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~-~~i~~~~~d~~~~~--------~~~  143 (519)
                      .+|+++|--|+++|+   ++..+++.|+ +|+.+|.+ +-++.+.+.+...+.. .++..+.+|+.+..        ...
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            478999999999985   5667788888 89999999 5677776667666653 57899999986641        010


Q ss_pred             CCceeeEEEEec
Q psy14674        144 GIQKVDIIISEW  155 (519)
Q Consensus       144 ~~~~~D~Ivs~~  155 (519)
                      ..++.|++|.+.
T Consensus        81 ~~G~iDilVnnA   92 (274)
T d1xhla_          81 KFGKIDILVNNA   92 (274)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HcCCceEEEeec
Confidence            115789999864

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.47  E-value=0.92  Score=40.68  Aligned_cols=78  Identities=17%  Similarity=0.229  Sum_probs=54.8

Q ss_pred             CCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCCC
Q psy14674         78 KGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFGI  145 (519)
Q Consensus        78 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~  145 (519)
                      .|+++|--|+++|+   ++..+++.|+ +|+.+|.+ +-++.+.+.+....-..++.++.+|+.+..        .....
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            58999999999885   5667778888 89999999 555555555544333456889999987641        00111


Q ss_pred             ceeeEEEEecc
Q psy14674        146 QKVDIIISEWM  156 (519)
Q Consensus       146 ~~~D~Ivs~~~  156 (519)
                      ++.|++|.+.-
T Consensus        81 G~iDilVnnAg   91 (254)
T d2gdza1          81 GRLDILVNNAG   91 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCcCeeccccc
Confidence            57999998653

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.36  E-value=0.24  Score=44.89  Aligned_cols=56  Identities=16%  Similarity=0.068  Sum_probs=40.7

Q ss_pred             EEEEceeeEe--ecCCCCceeeEEEEecccccc--------ccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674        130 TILKGKVEEV--ELPFGIQKVDIIISEWMGYCL--------FYESMLDTVLYARDKWLATNGLLFPDK  187 (519)
Q Consensus       130 ~~~~~d~~~~--~~~~~~~~~D~Ivs~~~~~~l--------~~e~~l~~~l~~~~r~LkpgG~lip~~  187 (519)
                      .++.+|+.++  .+|+  +++|+|+.++.....        .+...+...+.++.|+|||||.++...
T Consensus         6 ~~~~~D~le~l~~l~d--~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~   71 (279)
T d1eg2a_           6 VYDVCDCLDTLAKLPD--DSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG   71 (279)
T ss_dssp             EEEECCHHHHHHTSCT--TCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEechHHHHHhhCcC--CCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence            5677888776  5676  899999998863211        122445677888999999999888543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.18  E-value=1  Score=40.56  Aligned_cols=78  Identities=21%  Similarity=0.252  Sum_probs=57.2

Q ss_pred             CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCC-CcEEEEEceeeEee--------cCC
Q psy14674         77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS-DVVTILKGKVEEVE--------LPF  143 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~-~~i~~~~~d~~~~~--------~~~  143 (519)
                      .+|+++|--|++.|+   ++..+++.|+ +|+.++.+ +-++.+.+.+...+.. .++.++.+|+.+..        ...
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            478999999999885   5667788888 89999999 6677776666666543 56899999986531        000


Q ss_pred             CCceeeEEEEec
Q psy14674        144 GIQKVDIIISEW  155 (519)
Q Consensus       144 ~~~~~D~Ivs~~  155 (519)
                      ..++.|++|.+.
T Consensus        82 ~~g~iDilvnnA   93 (264)
T d1spxa_          82 KFGKLDILVNNA   93 (264)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HhCCCCEeeccc
Confidence            115799999864

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=81.74  E-value=1.8  Score=38.85  Aligned_cols=76  Identities=22%  Similarity=0.176  Sum_probs=55.4

Q ss_pred             CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCC-
Q psy14674         77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPF-  143 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~-  143 (519)
                      .+|+++|-.|+..|+   ++..+++.|+ +|+.++.+ +-++.+.+.+...+.  .+.++.+|+.+..        ... 
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHH
Confidence            479999999999884   5667788888 99999999 566777777777664  3788888886642        010 


Q ss_pred             CCceeeEEEEec
Q psy14674        144 GIQKVDIIISEW  155 (519)
Q Consensus       144 ~~~~~D~Ivs~~  155 (519)
                      ..+..|+++.+.
T Consensus        81 ~~g~idilinna   92 (258)
T d1ae1a_          81 FDGKLNILVNNA   92 (258)
T ss_dssp             TTSCCCEEEECC
T ss_pred             hCCCcEEEeccc
Confidence            115689988754

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.90  E-value=2.7  Score=35.73  Aligned_cols=102  Identities=18%  Similarity=0.279  Sum_probs=66.3

Q ss_pred             CEEEEECCccc--HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC-------CCCC--------------cEEEEEce
Q psy14674         80 KIVLDIGCGTG--ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN-------NLSD--------------VVTILKGK  135 (519)
Q Consensus        80 ~~VLDiGcGtG--~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~-------~~~~--------------~i~~~~~d  135 (519)
                      ++|--||+|+=  .++..++++|. .|+.+|.+ +.++.++++++.+       +...              ++.... |
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~-d   82 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST-D   82 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES-C
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc-h
Confidence            47889999862  35667777787 99999999 6888777765432       2210              122221 1


Q ss_pred             eeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccc
Q psy14674        136 VEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFI  192 (519)
Q Consensus       136 ~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~  192 (519)
                      ..+ .+    ...|+|+-...    ........++..+.+.++++.++.-++.++-+
T Consensus        83 ~~~-a~----~~ad~ViEav~----E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i  130 (192)
T d1f0ya2          83 AAS-VV----HSTDLVVEAIV----ENLKVKNELFKRLDKFAAEHTIFASNTSSLQI  130 (192)
T ss_dssp             HHH-HT----TSCSEEEECCC----SCHHHHHHHHHHHTTTSCTTCEEEECCSSSCH
T ss_pred             hHh-hh----cccceehhhcc----cchhHHHHHHHHHhhhcccCceeeccCccccc
Confidence            111 01    45788875432    33356778899999999999998877776443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=80.69  E-value=1.9  Score=38.41  Aligned_cols=77  Identities=23%  Similarity=0.280  Sum_probs=55.6

Q ss_pred             CCCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCC
Q psy14674         76 LFKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPF  143 (519)
Q Consensus        76 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~  143 (519)
                      ..+++++|--|++.|+   ++..+++.|+ +|+.+|.+ +.++.+.+.++..+.  ++..+.+|+.+..        ...
T Consensus         7 ~lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~   83 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILT   83 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence            3568999999998884   4556667787 89999999 677777776766553  5888999987631        011


Q ss_pred             CCceeeEEEEec
Q psy14674        144 GIQKVDIIISEW  155 (519)
Q Consensus       144 ~~~~~D~Ivs~~  155 (519)
                      ..++.|++|.+.
T Consensus        84 ~~g~iDilvnna   95 (251)
T d2c07a1          84 EHKNVDILVNNA   95 (251)
T ss_dssp             HCSCCCEEEECC
T ss_pred             hcCCceeeeecc
Confidence            126899999865

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.13  E-value=1  Score=40.05  Aligned_cols=72  Identities=19%  Similarity=0.235  Sum_probs=49.7

Q ss_pred             CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee----cCCCCcee
Q psy14674         77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE----LPFGIQKV  148 (519)
Q Consensus        77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~~~  148 (519)
                      .+|+++|--|+++|+   ++..+++.|+ +|+.+|.+ +-++.+.+.   .+   .+..++.|+.+..    .-...++.
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~---~~---~~~~~~~Dv~d~~~v~~~~~~~g~i   77 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRE---CP---GIEPVCVDLGDWEATERALGSVGPV   77 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---ST---TCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHh---cC---CCeEEEEeCCCHHHHHHHHHHhCCc
Confidence            579999999999984   5667788888 89999999 444433332   21   2677888876531    11122689


Q ss_pred             eEEEEec
Q psy14674        149 DIIISEW  155 (519)
Q Consensus       149 D~Ivs~~  155 (519)
                      |++|.+.
T Consensus        78 DilVnnA   84 (244)
T d1pr9a_          78 DLLVNNA   84 (244)
T ss_dssp             CEEEECC
T ss_pred             eEEEecc
Confidence            9999865