Psyllid ID: psy14684

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
MTERVYFEHQYFYSMGSESPASSGSHRIPPPAVAQKKYHLYGRRLFHDHNSTAASTSSDISSVDSAAIKFEMNDTDSARLPMLDAASCSSKYNSSDDVKYSCRSDFARTSHRPSLSELVSHNHTYSSSHSTSLAPETLGATSRNYSKDKTAKYIEKLKMVDFAARKSEEEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNPYSPFEFSLEQTNDGNVELVRRQPPHLASQGHPSTSSKDNSTLDNNHSHQYRSKHHKDYHDHRKE
ccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccHHHccccHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccc
cccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccHccccHHHHHHHHccccccHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHcHEEEEEcccccEEEEEcccccEccccccccccccccccccccccccccccHHHHHHHccc
mtervyfehqyfysmgsespassgshripppavaqkkyhlygrrlfhdhnstaastssdissvdSAAIKFEmndtdsarlpmldaascsskynssddvkyscrsdfartshrpslselvshnhtyssshstslapetlgatsrnyskdkTAKYIEKLKMVDFAARKSEEEQMTRDEKKAralnipipvndiinlpmdefnerlskydlseTQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNAlrdsdgnpyspfefsleqtndgnvelvrrqpphlasqghpstsskdnstldnnhshqyrskhhkdyhdhrke
MTERVYFEHQYFYSMGSESPASSGSHRIPPPAVAQKKYHLYGRRLFHDHnstaastssdissvDSAAIKFEMNDTDSARLPMLDAASCSSKYNSSDDVKYSCRSDFARTSHRPSLSELVSHNHTyssshstslapetlgatsrnyskdktakyIEKLKMVDFAArkseeeqmtrdekkaralnipipvndiiNLPMDEFNERLSKYDLSETQLSLIRDIRrrgknkvaaqncrkrkldqilsLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNPYSPFEFSLEQTNDGNVELVRRQPPhlasqghpstsskdnstldnnhshqyrskhhkdyhdhrke
MTERVYFEHQYFYsmgsespassgsHRIPPPAVAQKKYHLYGRRLFHDHNstaastssdissvdsaaiKFEMNDTDSARLPMLDAASCSSKYNSSDDVKYSCRSDFARTSHRPSLSELVshnhtyssshstsLAPETLGATSRNYSKDKTAKYIEKLKMVDFAARKSEEEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNPYSPFEFSLEQTNDGNVELVRRQPPHLASQGHPSTSSKDNSTLDNNHSHQYRSKHHKDYHDHRKE
****VYFEHQYFY***********************KYHLYGRRLF***************************************************************************************************************************************LNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIR****************************************************SQFSQLYKHVFNAL***********************************************************************
***RVYFEHQYF**********************************************************************************************************VSHN*****************************************************************VNDII********************************************LDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKH******************SLEQTNDGNVEL**********************************************
MTERVYFEHQYFYSMG************PPPAVAQKKYHLYGRRLFHDHN***********SVDSAAIKFEMNDTDSARLPMLDAAS************YSCRSDFARTSHRPSLSELVS**************PETLGATSRNYSKDKTAKYIEKLKMVDFAARK***********KARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRR*********NCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNPYSPFEFSLEQTNDGNVELVRRQP*****************************************
*TERVYFEHQYFYSM****************************************************************************************************SE**********************************************************EKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNPYSPFEFSLEQTNDGNVELVRRQPP****************************************
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MTERVYFEHQYFYSMGSESPASSGSHRIPPPAVAQKKYHLYGRRLFHDHNSTAASTSSDISSVDSAAIKFEMNDTDSARLPMLDAASCSSKYNSSDDVKYSCRSDFARTSHRPSLSELVSHNHTYSSSHSTSLAPETLGATSRNYSKDKTAKYIEKLKMVDFAARKSEEEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQxxxxxxxxxxxxxxxxxxxxxxxxxxxxCSRVKSQFSQLYKHVFNALRDSDGNPYSPFEFSLEQTNDGNVELVRRQPPHLASQGHPSTSSKDNSTLDNNHSHQYRSKHHKDYHDHRKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query357 2.2.26 [Sep-21-2011]
P204821383 Segmentation protein cap' no N/A 0.761 0.196 0.438 2e-55
Q5ZL67772 Nuclear factor erythroid yes N/A 0.507 0.234 0.469 1e-42
A5D7E9763 Nuclear factor erythroid yes N/A 0.546 0.255 0.463 1e-42
Q5RA25772 Nuclear factor erythroid yes N/A 0.543 0.251 0.470 2e-42
Q61985741 Nuclear factor erythroid no N/A 0.546 0.263 0.463 3e-42
Q14494772 Nuclear factor erythroid yes N/A 0.543 0.251 0.470 3e-42
Q5NUA6607 Nuclear factor erythroid no N/A 0.408 0.240 0.554 7e-41
O54968604 Nuclear factor erythroid yes N/A 0.408 0.241 0.554 8e-41
Q16236605 Nuclear factor erythroid no N/A 0.408 0.241 0.561 1e-40
Q60795597 Nuclear factor erythroid no N/A 0.408 0.244 0.554 1e-40
>sp|P20482|CNC_DROME Segmentation protein cap'n'collar OS=Drosophila melanogaster GN=cnc PE=2 SV=3 Back     alignment and function desciption
 Score =  216 bits (551), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 139/317 (43%), Positives = 181/317 (57%), Gaps = 45/317 (14%)

Query: 31   PAVAQKKYHLYGRRLFHDHNSTAASTSSDISS---VDSAAIKFEMND--------TDSAR 79
            P VAQKK+ LYG+R  H    +A   ++  ++   V S +IK+E +         +    
Sbjct: 992  PPVAQKKHQLYGKRDPHKQTPSALPPTAPPAAATAVQSQSIKYEYDAGYASSGMASGGIS 1051

Query: 80   LPMLDAASCSSKY-----------NSSDDVKYSCRSDFARTSHRPSLSELVSHNHTYSSS 128
             P     + S  Y            S+    Y+ R    RTS      +LV  NHTYS  
Sbjct: 1052 EPGAMGPALSKDYHHHQPYGMGASGSAFSGDYTVRPS-PRTSQ-----DLVQLNHTYS-- 1103

Query: 129  HSTSLAPETLGATSRNYSKDKTAKYIEKLKMVDFAARKS----------EEEQMTRDEKK 178
                  P+  G+  R  ++DK      K      +A  S          EEE +TRDEK+
Sbjct: 1104 -----LPQGSGSLPRPQARDKKPLVATKTASKGASAGNSSSVGGNSSNLEEEHLTRDEKR 1158

Query: 179  ARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLD 238
            AR+LNIPI V DIINLPMDEFNERLSKYDLSE QLSLIRDIRRRGKNKVAAQNCRKRKLD
Sbjct: 1159 ARSLNIPISVPDIINLPMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLD 1218

Query: 239  QILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNPYSPFE 298
            QIL+L DEV  +  +K  L Q+ ++L  E  R+ ++F+ L++HVF  LRD +GNP SP +
Sbjct: 1219 QILTLEDEVNAVVKRKTQLNQDRDHLESERKRISNKFAMLHRHVFQYLRDPEGNPCSPAD 1278

Query: 299  FSLEQTNDGNVELVRRQ 315
            +SL+Q  DG+V L+ R+
Sbjct: 1279 YSLQQAADGSVYLLPRE 1295
Plays a role in posterior cephalic patterning. Probable subunit of a heterodimeric regulatory protein involved in the control of head morphogenesis. Isoform B may have a repressive effect on Dfd response elements, thereby modifying the activity and specificity of the Hox system and moving the body anterior/posterior axis.
Drosophila melanogaster (taxid: 7227)
>sp|Q5ZL67|NF2L1_CHICK Nuclear factor erythroid 2-related factor 1 OS=Gallus gallus GN=NFE2L1 PE=2 SV=1 Back     alignment and function description
>sp|A5D7E9|NF2L1_BOVIN Nuclear factor erythroid 2-related factor 1 OS=Bos taurus GN=NFE2L1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RA25|NF2L1_PONAB Nuclear factor erythroid 2-related factor 1 OS=Pongo abelii GN=NFE2L1 PE=2 SV=1 Back     alignment and function description
>sp|Q61985|NF2L1_MOUSE Nuclear factor erythroid 2-related factor 1 OS=Mus musculus GN=Nfe2l1 PE=2 SV=1 Back     alignment and function description
>sp|Q14494|NF2L1_HUMAN Nuclear factor erythroid 2-related factor 1 OS=Homo sapiens GN=NFE2L1 PE=1 SV=1 Back     alignment and function description
>sp|Q5NUA6|NF2L2_BOVIN Nuclear factor erythroid 2-related factor 2 OS=Bos taurus GN=NFE2L2 PE=2 SV=2 Back     alignment and function description
>sp|O54968|NF2L2_RAT Nuclear factor erythroid 2-related factor 2 OS=Rattus norvegicus GN=Nfe2l2 PE=1 SV=2 Back     alignment and function description
>sp|Q16236|NF2L2_HUMAN Nuclear factor erythroid 2-related factor 2 OS=Homo sapiens GN=NFE2L2 PE=1 SV=3 Back     alignment and function description
>sp|Q60795|NF2L2_MOUSE Nuclear factor erythroid 2-related factor 2 OS=Mus musculus GN=Nfe2l2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
282165741 751 cap-n-collar [Tribolium castaneum] 0.722 0.343 0.517 4e-72
270015109 670 cap-n-collar [Tribolium castaneum] 0.722 0.385 0.517 4e-72
242021359 681 conserved hypothetical protein [Pediculu 0.857 0.449 0.470 3e-71
307181905415 Segmentation protein cap'n'collar [Campo 0.764 0.657 0.503 6e-71
340709531 974 PREDICTED: segmentation protein cap'n'co 0.739 0.271 0.512 7e-70
350412314 972 PREDICTED: segmentation protein cap'n'co 0.739 0.271 0.512 9e-70
328792851 976 PREDICTED: segmentation protein cap'n'co 0.731 0.267 0.513 1e-69
380023442 851 PREDICTED: segmentation protein cap'n'co 0.731 0.306 0.513 1e-69
383860397 974 PREDICTED: segmentation protein cap'n'co 0.728 0.266 0.522 2e-69
332028993414 Segmentation protein cap'n'collar [Acrom 0.789 0.681 0.488 3e-68
>gi|282165741|ref|NP_001164113.1| cap-n-collar [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  278 bits (710), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 150/290 (51%), Positives = 193/290 (66%), Gaps = 32/290 (11%)

Query: 27  RIPPPAVAQKKYHLYGRRLFHDHNSTAASTSSDISSVDSAAIKFEMNDTDSARLPMLDAA 86
           R+PP  VAQKK+ ++G+R   +  +T+A +           +K+E  D  +A  P   + 
Sbjct: 472 RMPP--VAQKKHQMFGKRYLQEQGATSAVSHQ-------PPVKYEYRDPTAA--PYNSSQ 520

Query: 87  SCSSKYNSSDDVKYSCRSDFARTSH--RPSLSELVSHNHTYSSSHSTSLAPETLGATSRN 144
              +      ++KYSC  +F R SH  R SL   + HNHTY       L  E+ GA  R 
Sbjct: 521 PEGAVGPKPSEMKYSCSMEFGRHSHLVRNSLDH-IQHNHTYH------LPTESTGAMQRP 573

Query: 145 YSKDKTAKYIEKLKMVDFAARKSEEEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLS 204
            S+DKT             ++K +EE +TRDEK+ARALN+PI V+DIINLPMDEFNERLS
Sbjct: 574 VSRDKTK------------SKKGDEEHLTRDEKRARALNVPITVDDIINLPMDEFNERLS 621

Query: 205 KYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYL 264
           KYDLSE QLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVK M+D+K  LM EHEY+
Sbjct: 622 KYDLSEPQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKDMRDRKMRLMNEHEYV 681

Query: 265 SQECSRVKSQFSQLYKHVFNALRDSDGNPYSPFEFSLEQTNDGNVELVRR 314
           + EC R+K ++ QLY+HVF  LRD DGN YSP+++SL+ + DG++ +V R
Sbjct: 682 TGECQRMKDKYQQLYRHVFQNLRDPDGNQYSPYQYSLQTSADGSILVVPR 731

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|270015109|gb|EFA11557.1| cap-n-collar [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242021359|ref|XP_002431112.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516361|gb|EEB18374.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307181905|gb|EFN69345.1| Segmentation protein cap'n'collar [Camponotus floridanus] Back     alignment and taxonomy information
>gi|340709531|ref|XP_003393359.1| PREDICTED: segmentation protein cap'n'collar-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350412314|ref|XP_003489606.1| PREDICTED: segmentation protein cap'n'collar-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328792851|ref|XP_003251788.1| PREDICTED: segmentation protein cap'n'collar-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380023442|ref|XP_003695532.1| PREDICTED: segmentation protein cap'n'collar-like [Apis florea] Back     alignment and taxonomy information
>gi|383860397|ref|XP_003705677.1| PREDICTED: segmentation protein cap'n'collar-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332028993|gb|EGI69007.1| Segmentation protein cap'n'collar [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
FB|FBgn02629751383 cnc "cap-n-collar" [Drosophila 0.515 0.133 0.563 2.2e-50
UNIPROTKB|E2RI04590 NFE2L2 "Uncharacterized protei 0.403 0.244 0.576 3.6e-42
UNIPROTKB|F1P6Y9608 NFE2L2 "Uncharacterized protei 0.403 0.236 0.576 3.8e-42
UNIPROTKB|F1RZF7592 NFE2L2 "Uncharacterized protei 0.403 0.243 0.576 7.5e-42
UNIPROTKB|F1MKR6607 NFE2L2 "Nuclear factor erythro 0.403 0.237 0.562 4.2e-41
UNIPROTKB|Q5NUA6607 NFE2L2 "Nuclear factor erythro 0.403 0.237 0.562 4.2e-41
UNIPROTKB|Q16236605 NFE2L2 "Nuclear factor erythro 0.403 0.238 0.569 6.7e-41
MGI|MGI:108420597 Nfe2l2 "nuclear factor, erythr 0.403 0.241 0.562 7.3e-41
RGD|620360604 Nfe2l2 "nuclear factor, erythr 0.403 0.238 0.562 1e-40
UNIPROTKB|O54968604 Nfe2l2 "Nuclear factor erythro 0.403 0.238 0.562 1e-40
FB|FBgn0262975 cnc "cap-n-collar" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 511 (184.9 bits), Expect = 2.2e-50, Sum P(2) = 2.2e-50
 Identities = 106/188 (56%), Positives = 132/188 (70%)

Query:   168 EEEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKV 227
             EEE +TRDEK+AR+LNIPI V DIINLPMDEFNERLSKYDLSE QLSLIRDIRRRGKNKV
Sbjct:  1148 EEEHLTRDEKRARSLNIPISVPDIINLPMDEFNERLSKYDLSENQLSLIRDIRRRGKNKV 1207

Query:   228 AAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALR 287
             AAQNCRKRKLDQIL+L DEV  +  +K  L Q+ ++L  E  R+ ++F+ L++HVF  LR
Sbjct:  1208 AAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQDRDHLESERKRISNKFAMLHRHVFQYLR 1267

Query:   288 DSDGNPYSPFEFSLEQTNDGNVELVRRQPP---HLASQGHPSTSSKDNSTLDNNHSHQYR 344
             D +GNP SP ++SL+Q  DG+V L+ R+     + A+    + SS    +L N H     
Sbjct:  1268 DPEGNPCSPADYSLQQAADGSVYLLPREKSEGNNTATAASNAVSSASGGSL-NGHVPTQA 1326

Query:   345 SKHHKDYH 352
               H    H
Sbjct:  1327 PMHSHQSH 1334
GO:0005634 "nucleus" evidence=IDA;NAS
GO:0046982 "protein heterodimerization activity" evidence=ISS;IPI
GO:0060465 "pharynx development" evidence=IMP
GO:0060322 "head development" evidence=IMP
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;TAS
GO:0007350 "blastoderm segmentation" evidence=IMP
GO:0008359 "regulation of bicoid mRNA localization" evidence=IMP
GO:0008103 "oocyte microtubule cytoskeleton polarization" evidence=IMP
GO:0007310 "oocyte dorsal/ventral axis specification" evidence=IMP
GO:0042070 "maintenance of oocyte nucleus location involved in oocyte dorsal/ventral axis specification" evidence=IMP
GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP
GO:0045450 "bicoid mRNA localization" evidence=IMP
GO:0045451 "pole plasm oskar mRNA localization" evidence=IMP
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0006979 "response to oxidative stress" evidence=IMP
GO:0008340 "determination of adult lifespan" evidence=IMP
UNIPROTKB|E2RI04 NFE2L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P6Y9 NFE2L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RZF7 NFE2L2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MKR6 NFE2L2 "Nuclear factor erythroid 2-related factor 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5NUA6 NFE2L2 "Nuclear factor erythroid 2-related factor 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q16236 NFE2L2 "Nuclear factor erythroid 2-related factor 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:108420 Nfe2l2 "nuclear factor, erythroid derived 2, like 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620360 Nfe2l2 "nuclear factor, erythroid derived 2, like 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O54968 Nfe2l2 "Nuclear factor erythroid 2-related factor 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O54968NF2L2_RATNo assigned EC number0.55470.40890.2417yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
smart0033865 smart00338, BRLZ, basic region leucin zipper 1e-11
pfam0017064 pfam00170, bZIP_1, bZIP transcription factor 2e-05
pfam0771654 pfam07716, bZIP_2, Basic region leucine zipper 0.002
>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper Back     alignment and domain information 
 Score = 59.1 bits (144), Expect = 1e-11
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 216 IRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQF 275
            +  RRR +N+ AA+  R+RK  +I  L  +V+Q++ +   L +E E L +E  ++KS+ 
Sbjct: 4   EKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63

Query: 276 SQ 277
            +
Sbjct: 64  EE 65

Length = 65
>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor Back     alignment and domain information
>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 357
KOG3863|consensus604 100.0
PF0313192 bZIP_Maf: bZIP Maf transcription factor; InterPro: 99.91
KOG4196|consensus135 99.9
smart0033865 BRLZ basic region leucin zipper. 99.29
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 99.12
KOG0837|consensus279 99.02
KOG4005|consensus292 98.88
KOG0709|consensus472 98.81
PF0771654 bZIP_2: Basic region leucine zipper; InterPro: IPR 98.8
KOG4571|consensus294 98.08
KOG3584|consensus348 97.65
KOG4343|consensus 655 97.45
KOG3119|consensus269 97.17
KOG1414|consensus395 95.38
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 94.77
PRK00888105 ftsB cell division protein FtsB; Reviewed 93.86
PF05266190 DUF724: Protein of unknown function (DUF724); Inte 92.72
PLN0321793 transcription factor ATBS1; Provisional 92.21
PRK13169110 DNA replication intiation control protein YabA; Re 92.08
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 91.56
PRK0440675 hypothetical protein; Provisional 90.35
PF07200150 Mod_r: Modifier of rudimentary (Mod(r)) protein; I 89.83
PF0537755 FlaC_arch: Flagella accessory protein C (FlaC); In 89.81
PF05266190 DUF724: Protein of unknown function (DUF724); Inte 89.78
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 89.78
PRK1542279 septal ring assembly protein ZapB; Provisional 89.75
PF05600507 DUF773: Protein of unknown function (DUF773); Inte 89.11
PF13851201 GAS: Growth-arrest specific micro-tubule binding 88.84
COG307479 Uncharacterized protein conserved in bacteria [Fun 88.61
PRK10884206 SH3 domain-containing protein; Provisional 88.6
PF10226195 DUF2216: Uncharacterized conserved proteins (DUF22 88.39
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 87.47
PF0410269 SlyX: SlyX; InterPro: IPR007236 The SlyX protein h 87.21
KOG3003|consensus236 87.17
PRK13169110 DNA replication intiation control protein YabA; Re 87.13
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 87.1
PF09766 355 FimP: Fms-interacting protein; InterPro: IPR019163 86.96
PF0497780 DivIC: Septum formation initiator; InterPro: IPR00 86.68
PRK0432574 hypothetical protein; Provisional 86.64
PRK0029568 hypothetical protein; Provisional 85.96
PF13801125 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 85.07
PF08172248 CASP_C: CASP C terminal; InterPro: IPR012955 This 84.94
PRK0073668 hypothetical protein; Provisional 84.38
PF02403108 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom 84.34
PRK0211973 hypothetical protein; Provisional 84.34
PRK0279372 phi X174 lysis protein; Provisional 83.97
PRK11637 428 AmiB activator; Provisional 83.86
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 83.8
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 83.25
TIGR02231 525 conserved hypothetical protein. This family consis 83.0
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 82.37
KOG1414|consensus395 82.33
KOG3863|consensus604 81.89
PRK10869553 recombination and repair protein; Provisional 81.48
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 81.23
PF1438988 Lzipper-MIP1: Leucine-zipper of ternary complex fa 81.11
PRK11637 428 AmiB activator; Provisional 80.83
PRK10884206 SH3 domain-containing protein; Provisional 80.74
PF0479589 PAPA-1: PAPA-1-like conserved region; InterPro: IP 80.73
PF12824164 MRP-L20: Mitochondrial ribosomal protein subunit L 80.54
PRK10455161 periplasmic protein; Reviewed 80.33
>KOG3863|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.3e-58  Score=470.01  Aligned_cols=310  Identities=37%  Similarity=0.514  Sum_probs=233.8

Q ss_pred             cceeecccccccCCCCCCCCCCCCCCCCchhhhhhhhhhcccccccCCCCCCCC--CCCCcccCCcccccccccCC----
Q psy14684          3 ERVYFEHQYFYSMGSESPASSGSHRIPPPAVAQKKYHLYGRRLFHDHNSTAAST--SSDISSVDSAAIKFEMNDTD----   76 (357)
Q Consensus         3 ~~~~~~~~~~~s~~~~~~~~~~~~~~~p~~vaqkk~~~~gkr~~~~q~~~~~~~--~~~~~~~~~~~~k~e~~~~~----   76 (357)
                      +-.-+|++||+.+.++++  ..+..++|  |.++|+ +.+..+-+..+.++.+-  +...+++.... ++.+..+.    
T Consensus       274 ~~~~~g~~~~~~~~~e~~--~~~~~~ep--~~~~~~-lsql~D~~~~~~s~Ls~~~~~n~~s~i~s~-~~~d~~~~~sig  347 (604)
T KOG3863|consen  274 EQPKPGTPFDPTIFAESS--DLPLAFEP--VTRPKS-LSQLFDGPPINNSALSEGIALNQASLISSQ-EDRDSCNQLSIG  347 (604)
T ss_pred             ccCCCCCcccchhccccc--cccccCCC--ccChhh-hhhccCCCCCcccccCcccccccccccccc-cccccccccCcc
Confidence            445689999999999876  34445554  999999 99998886666665221  11111211111 23333322    


Q ss_pred             ----cCCCCCCCc-ccCCCCCCCCC-CcCcccccccccCC---CCCCccccccCCccCCCCCCCCCCCCCCCCCCCCCCc
Q psy14684         77 ----SARLPMLDA-ASCSSKYNSSD-DVKYSCRSDFARTS---HRPSLSELVSHNHTYSSSHSTSLAPETLGATSRNYSK  147 (357)
Q Consensus        77 ----~~~~~~~~~-GAvG~~~~~~p-e~~~~~~~~~~~~~---~~~~~~e~V~HnHTY~~~~~~~l~~~~~~~~~~~~~~  147 (357)
                          ++..++.+. |+||++   +| +++..|.+......   .+.+.++||.|||||+-+...++.|.+.++..  ..+
T Consensus       348 ~~~~se~~~~~~~e~~~~~~---lp~~~~~~~~~~ts~~~~~~~~~~tl~~v~~n~~y~l~~~~~~sp~~~~~~~--~~~  422 (604)
T KOG3863|consen  348 TAGQSEPSSQSDSEGTVGGH---LPYSPSPSCVLPTSDYSVRGPQNTTLQHVSSNHTYSLGYGQSLSPLSIGSQQ--LPT  422 (604)
T ss_pred             ccCCCCCccccccccccccc---cCCCCCccccccCCcccccCCCCCccceeccccceecCcCCCCCcccccCcc--CCC
Confidence                233444444 999994   56 68899998765443   35678999999999994310012233333321  111


Q ss_pred             chhhHHHHHHhhhhhhhcc---hhhhhcchHHHHHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhcc
Q psy14684        148 DKTAKYIEKLKMVDFAARK---SEEEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGK  224 (357)
Q Consensus       148 ~~~~~~~~~~~~s~~~~~~---~~~~~~SRDE~RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgK  224 (357)
                      ..+.+     +.+......   ..+.++||||.||++++|||++|+||||||++||+||++|.||++||++|||||||||
T Consensus       423 p~~~~-----~~s~~~~~~~~~~~~~~~srde~ra~a~~iPF~vd~IinLp~~dFne~ls~~~lte~QLslIrDIRRRgK  497 (604)
T KOG3863|consen  423 PQQEQ-----KSSGDGVTTDTTGNEEHLSRDEHRAKALHIPFSVDEIINLPVDDFNEMLSKYKLTEEQLSLIRDIRRRGK  497 (604)
T ss_pred             ccccc-----cCCCCcccccccCcccccchhhhhhhhccCCCchHHhcCCcHHHHHHHHHhcccCHHHHHHhhccccccc
Confidence            12111     111111111   2256799999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcccceeec
Q psy14684        225 NKVAAQNCRKRKLDQILSLADEVKQMKDKKRHLMQEHEYLSQECSRVKSQFSQLYKHVFNALRDSDGNPYSPFEFSLEQT  304 (357)
Q Consensus       225 NRvAAQnCRKRKLd~I~~LEdEV~~Lk~EkekL~kEr~~L~~e~~~LKqkl~~L~q~Vf~~LrD~~G~P~SP~ey~Lq~~  304 (357)
                      ||||||||||||||+|.+||++|+.|+.++++|++|+.++.+++..|+++|..||++||++|+|++|+||+|.+|.||++
T Consensus       498 NkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~Vf~~lrd~eg~~~sp~~yalq~a  577 (604)
T KOG3863|consen  498 NKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEVFQQLRDEEGNPYSPSQYALQQA  577 (604)
T ss_pred             cchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCCCCcC
Q psy14684        305 NDGNVELVRRQPPHLASQGHPSTSSKD  331 (357)
Q Consensus       305 ~dG~V~lVPr~~~~~~~~~~~~~~~~~  331 (357)
                      +||+|+||||..-.-++   ..+.+++
T Consensus       578 ~dGsi~l~pr~~~~~~~---~~~~a~~  601 (604)
T KOG3863|consen  578 ADGSIKLAPREKRQSTT---DRELAKG  601 (604)
T ss_pred             ccCceeecchhhccccc---ccccccc
Confidence            99999999997766544   4444443

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell Back     alignment and domain information
>KOG4196|consensus Back     alignment and domain information
>smart00338 BRLZ basic region leucin zipper Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>KOG0837|consensus Back     alignment and domain information
>KOG4005|consensus Back     alignment and domain information
>KOG0709|consensus Back     alignment and domain information
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization Back     alignment and domain information
>KOG4571|consensus Back     alignment and domain information
>KOG3584|consensus Back     alignment and domain information
>KOG4343|consensus Back     alignment and domain information
>KOG3119|consensus Back     alignment and domain information
>KOG1414|consensus Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PRK00888 ftsB cell division protein FtsB; Reviewed Back     alignment and domain information
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>PRK04406 hypothetical protein; Provisional Back     alignment and domain information
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins Back     alignment and domain information
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct [] Back     alignment and domain information
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function Back     alignment and domain information
>KOG3003|consensus Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7 Back     alignment and domain information
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation [] Back     alignment and domain information
>PRK04325 hypothetical protein; Provisional Back     alignment and domain information
>PRK00295 hypothetical protein; Provisional Back     alignment and domain information
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H Back     alignment and domain information
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins Back     alignment and domain information
>PRK00736 hypothetical protein; Provisional Back     alignment and domain information
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK02119 hypothetical protein; Provisional Back     alignment and domain information
>PRK02793 phi X174 lysis protein; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>TIGR02231 conserved hypothetical protein Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>KOG1414|consensus Back     alignment and domain information
>KOG3863|consensus Back     alignment and domain information
>PRK10869 recombination and repair protein; Provisional Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1 Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF04795 PAPA-1: PAPA-1-like conserved region; InterPro: IPR006880 This is a group of proteins with a conserved C-terminal region which is found in PAPA-1, a PAP-1 binding protein, Q9C086 from SWISSPROT Back     alignment and domain information
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK10455 periplasmic protein; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
2lz1_A90 Solution Nmr Structure Of The Dna-Binding Domain Of 1e-20
2kz5_A91 Solution Nmr Structure Of Transcription Factor Nf-E 1e-19
1skn_P92 The Binding Domain Of Skn-1 In Complex With Dna: A 6e-09
>pdb|2LZ1|A Chain A, Solution Nmr Structure Of The Dna-Binding Domain Of Human Nf-E2- Related Factor 2, Northeast Structural Genomics Consortium (Nesg) Target Hr3520o Length = 90 Back     alignment and structure 
Iteration: 1

 Score = 97.1 bits (240), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 169 EEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVA 228
           E  +TRDE +A+AL+IP PV  IINLP+ +FNE +SK   +E QL+LIRDIRRRGKNKVA
Sbjct: 18  EAHLTRDELRAKALHIPFPVEKIINLPVVDFNEMMSKEQFNEAQLALIRDIRRRGKNKVA 77
Query: 229 AQNCRKRKLDQIL 241
           AQNCRKRKL+ I+
Sbjct: 78  AQNCRKRKLENIV 90
>pdb|2KZ5|A Chain A, Solution Nmr Structure Of Transcription Factor Nf-E2 Subunit's Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4653b Length = 91 Back     alignment and structure
>pdb|1SKN|P Chain P, The Binding Domain Of Skn-1 In Complex With Dna: A New Dna- Binding Motif Length = 92 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
1skn_P92 DNA-binding domain of SKN-1; complex (transcriptio 2e-33
2kz5_A91 Transcription factor NF-E2 45 kDa subunit; structu 4e-32
3a5t_A107 Transcription factor MAFG; protein-DNA complex, BZ 2e-18
2wt7_B90 Transcription factor MAFB; transcription, transcri 7e-18
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 2e-11
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 2e-08
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 3e-08
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 1e-07
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 1e-05
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 2e-05
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 3e-05
2dgc_A63 Protein (GCN4); basic domain, leucine zipper, DNA 3e-04
1gd2_E70 Transcription factor PAP1; basic leucine zipper, p 5e-04
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1 Length = 92 Back     alignment and structure
 Score =  118 bits (297), Expect = 2e-33
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query: 164 ARKSEEEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRG 223
           + + +  + ++DE+ A    +P+    I  + + E  + L    LSE Q  LIR IRRRG
Sbjct: 9   SGQRKRGRQSKDEQLASDNELPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRG 68

Query: 224 KNKVAAQNCRKRKLDQILSLADEV 247
           KNKVAA+ CR+R+ D+   ++  +
Sbjct: 69  KNKVAARTCRQRRTDRHDKMSHYI 92
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 91 Back     alignment and structure
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107 Back     alignment and structure
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90 Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62 Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63 Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61 Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63 Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87 Back     alignment and structure
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55 Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78 Back     alignment and structure
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63 Back     alignment and structure
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
2lz1_A90 Nuclear factor erythroid 2-related factor 2; struc 100.0
2kz5_A91 Transcription factor NF-E2 45 kDa subunit; structu 99.98
1skn_P92 DNA-binding domain of SKN-1; complex (transcriptio 99.97
3a5t_A107 Transcription factor MAFG; protein-DNA complex, BZ 99.95
2wt7_B90 Transcription factor MAFB; transcription, transcri 99.94
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 99.41
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 99.37
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 99.31
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 99.17
2dgc_A63 Protein (GCN4); basic domain, leucine zipper, DNA 98.95
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 98.8
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 98.64
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 98.59
1gd2_E70 Transcription factor PAP1; basic leucine zipper, p 98.04
3lay_A175 Zinc resistance-associated protein; salmonella typ 95.2
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 93.47
2c9l_Y63 EB1, zebra, BZLF1 trans-activator protein; viral p 93.28
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 91.25
3m91_A51 Proteasome-associated ATPase; coil COIL alpha heli 89.88
2oqq_A42 Transcription factor HY5; homodimer leucine zipper 89.85
2oxj_A34 Hybrid alpha/beta peptide based on the GCN4-P1 Se 89.61
3m48_A33 General control protein GCN4; leucine zipper, synt 89.61
1kd8_B36 GABH BLL, GCN4 acid base heterodimer base-D12LA16L 89.37
1kd8_A36 GABH AIV, GCN4 acid base heterodimer acid-D12IA16V 89.08
3c3f_A34 Alpha/beta peptide with the GCN4-PLI SIDE chain S 87.53
3itf_A145 Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxr 86.57
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 86.18
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 86.18
3s9g_A104 Protein hexim1; cyclin T-binding domain (TBD), cyc 85.55
3c3g_A33 Alpha/beta peptide with the GCN4-PLI SIDE chain S 85.44
1wle_A 501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 85.43
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 85.39
2bni_A34 General control protein GCN4; four helix bundle, a 85.22
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 85.13
3mq7_A121 Bone marrow stromal antigen 2; HIV, antiviral prot 84.7
1uo4_A34 General control protein GCN4; four helix bundle, c 84.52
3m9b_A251 Proteasome-associated ATPase; coil COIL with 5 bet 83.74
3efg_A78 Protein SLYX homolog; xanthomonas campestris PV. c 83.64
2p22_C192 Protein SRN2; endosome, trafficking complex, VPS23 83.46
2hy6_A34 General control protein GCN4; protein design, para 83.36
2wq1_A33 General control protein GCN4; TAA, nucleus, coiled 83.34
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 83.02
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 82.85
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 82.66
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 82.55
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 82.55
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 82.44
2v4h_A110 NF-kappa-B essential modulator; transcription, met 82.14
3w03_C184 DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS 81.15
3lss_A 484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 80.7
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=8.7e-35  Score=236.25  Aligned_cols=74  Identities=66%  Similarity=1.003  Sum_probs=71.3

Q ss_pred             hhhhhcchHHHHHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHH
Q psy14684        167 SEEEQMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQI  240 (357)
Q Consensus       167 ~~~~~~SRDE~RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I  240 (357)
                      ..+..+||||+||++++||||+||||||||+|||+||++++||++|+++|||||||||||+|||||||||+|.|
T Consensus        16 ~~~~~~srDE~ra~~~~LPFsvdqIvnLpv~eFn~lL~~~~Lt~~Ql~lIrdiRRRgKNkvAAqnCRKRKld~I   89 (90)
T 2lz1_A           16 RLEAHLTRDELRAKALHIPFPVEKIINLPVVDFNEMMSKEQFNEAQLALIRDIRRRGKNKVAAQNCRKRKLENI   89 (90)
T ss_dssp             CCCCCCCHHHHHHHHHTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHSCSCCCCCCCSCCCCSCC
T ss_pred             chhhccchhHHHHHHcCCCCCHHHHHHCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhHHHHHHcchhhcccc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999875
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1 Back     alignment and structure
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Back     alignment and structure
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Back     alignment and structure
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Back     alignment and structure
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Back     alignment and structure
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A Back     alignment and structure
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A* Back     alignment and structure
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A Back     alignment and structure
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B Back     alignment and structure
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A Back     alignment and structure
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1 Back     alignment and structure
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A Back     alignment and structure
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A* Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ... Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Back     alignment and structure
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A* Back     alignment and structure
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A Back     alignment and structure
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C Back     alignment and structure
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A Back     alignment and structure
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ... Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} Back     alignment and structure
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens} Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 357
d1sknp_74 a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId 1e-33
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]} Length = 74 Back     information, alignment and structure

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  117 bits (294), Expect = 1e-33
 Identities = 29/70 (41%), Positives = 42/70 (60%)

Query: 171 QMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQ 230
           + ++DE+ A    +P+    I  + + E  + L    LSE Q  LIR IRRRGKNKVAA+
Sbjct: 2   RQSKDEQLASDNELPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAAR 61

Query: 231 NCRKRKLDQI 240
            CR+R+ D+ 
Sbjct: 62  TCRQRRTDRH 71

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
d1sknp_74 Skn-1 {Caenorhabditis elegans [TaxId: 6239]} 100.0
d1k1va_41 Mafg {Mouse (Mus musculus) [TaxId: 10090]} 99.02
d1seta1110 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 86.64
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 84.25
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 83.89
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 80.5
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.5e-36  Score=234.66  Aligned_cols=73  Identities=40%  Similarity=0.621  Sum_probs=70.7

Q ss_pred             hcchHHHHHHHcCCCCChhhHhcCCHHHHHHHHhcCCCCHHHHHHHHHHHHhccchHHHHhhhhhHHHHHHhH
Q psy14684        171 QMTRDEKKARALNIPIPVNDIINLPMDEFNERLSKYDLSETQLSLIRDIRRRGKNKVAAQNCRKRKLDQILSL  243 (357)
Q Consensus       171 ~~SRDE~RA~al~IPFSvdeIVnLPV~EFNelLs~~~LSeeQl~lIRdIRRRgKNRvAAQnCRKRKLd~I~~L  243 (357)
                      ..||||+||++++||||+++||+|||+|||+||++++||++|+++|||||||||||+|||||||||+|+++.|
T Consensus         2 r~srde~ra~~~~iPfs~~~Iv~lpv~eFne~l~~~~Lte~Ql~lirDIRRRGKNKvAAqnCRKRKld~~d~l   74 (74)
T d1sknp_           2 RQSKDEQLASDNELPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKM   74 (74)
T ss_dssp             CCCHHHHHHHHTTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccchHHHHHHHcCCCccHHHHHHCCHHHHHHHHHhCCCCHHHHHHHHHHHHhcccHHHHHHHHHhhhhhhccC
Confidence            3689999999999999999999999999999999999999999999999999999999999999999998765
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure